BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001336
(1097 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 133/569 (23%), Positives = 233/569 (40%), Gaps = 79/569 (13%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+++SV V +SPDG A V L+ +G +L L H SV +AFS P+
Sbjct: 56 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVRGVAFS-PDG 110
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
Q ++ + +D+ +K+W+ G GH S V+ + + Q I S + D +K W
Sbjct: 111 Q-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDGQTIASASDDKTVKLW 166
Query: 500 LYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 557
N ++ GHSS++ +A+S DG + S +K + WN G + +T
Sbjct: 167 ---NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT----VKLWNR-NGQLLQTLT 218
Query: 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 617
G SV V F +A D+ +K W+ N LL ++ G + + F +G
Sbjct: 219 GH-SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVNGVAFRPDG 274
Query: 618 ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVA----SAAIVKAPAIGTFGSANA 673
+A +++D +K L N +G +LL+T+ + VA I A T N
Sbjct: 275 QTIASASDDKTVK-LWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 332
Query: 674 NVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS-RIWKLTEITEPSQCRSLR 732
N G L T ++++ G++ F+ IA + +K+ ++W R+ +
Sbjct: 333 N-GQHLQTLTGHSSSVWGVA-----FSPDGQTIASASDDKTVKLWN----------RNGQ 376
Query: 733 LPDNLT--AMRVSRLIYTNSGLAILALASNAVHKLWKWPRN------------------- 771
L LT + V + ++ G I + + + KLW RN
Sbjct: 377 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAF 434
Query: 772 --ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGK- 828
+ + A+ ++ +LW +L T T +V A S + + SAS K
Sbjct: 435 SPDDQTIASASDDKTVKLWNRNGQLLQTL----TGHSSSVRGVAFSPDGQTIASASDDKT 490
Query: 829 ISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG 888
+ L+N D IA +D +++++N R ++ L G
Sbjct: 491 VKLWNRNGQLLQTLTGHSSSVRGVA--FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 547
Query: 889 HQKRITGLAFSNTLNVLVSSGADSQLCVW 917
H + G+AFS + S+ +D + +W
Sbjct: 548 HSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 129/541 (23%), Positives = 225/541 (41%), Gaps = 75/541 (13%)
Query: 411 HGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 470
H G + RN LE AH SV +AFS P+ Q ++ + +D+ +K+W+ G GH
Sbjct: 3 HMGVKERNRLE--AHSSSVRGVAFS-PDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHS 57
Query: 471 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM--MAYSADGAR 528
S V+ + + Q I S + D +K W N ++ GHSS++ +A+S DG
Sbjct: 58 SSVWGVA--FSPDGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVRGVAFSPDGQT 112
Query: 529 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFW 588
+ S +K + WN G + +T G SV V F +A D+ +K W
Sbjct: 113 IASASDDKT----VKLWNR-NGQLLQTLTGH-SSSVWGVAFSPDGQTIASASDDKTVKLW 166
Query: 589 DMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRT 648
+ N LL ++ G + + F+ +G +A +++D +K L N +G +LL+T+ T
Sbjct: 167 NR-NGQLLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVK-LWNRNG-QLLQTL---T 218
Query: 649 FDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPK--- 705
+S V A +P T SA+ + L R + + S N +P
Sbjct: 219 GHSSSVRGVAF--SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQT 276
Query: 706 IADEAVEKS-RIWKLTEITEPSQCRSLRLPDNLTAMRVS--RLIYTNSGLAILALASNAV 762
IA + +K+ ++W R+ +L LT S + ++ G I + + +
Sbjct: 277 IASASDDKTVKLWN----------RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 326
Query: 763 HKLWKWPRNERN---------------------STGKATTNQAPQLWQPPSGILMTNDIS 801
KLW RN ++ + A+ ++ +LW +L T
Sbjct: 327 VKLWN--RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--- 381
Query: 802 DTNPEDAVPCFALSKNDSYVMSASGGK-ISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDN 860
T +V A S + + SAS K + L+N D+
Sbjct: 382 -TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA--FSPDD 438
Query: 861 NIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTD 920
IA +D +++++N R ++ L GH + G+AFS + S+ D + +W+ +
Sbjct: 439 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 497
Query: 921 G 921
G
Sbjct: 498 G 498
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 134/573 (23%), Positives = 235/573 (41%), Gaps = 79/573 (13%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+++SV V +SPDG A V L+ +G +L L H SV +AFS P+
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTL--TGHSSSVWGVAFS-PDG 69
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
Q ++ + +D+ +K+W+ G GH S V + + Q I S + D +K W
Sbjct: 70 Q-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA--FSPDGQTIASASDDKTVKLW 125
Query: 500 LYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 557
N ++ GHSS++ +A+S DG + S +K + WN G + +T
Sbjct: 126 ---NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT----VKLWNR-NGQLLQTLT 177
Query: 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 617
G SV V F +A D+ +K W+ N LL ++ G + + F+ +G
Sbjct: 178 GH-SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL--TGHSSSVRGVAFSPDG 233
Query: 618 ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVA----SAAIVKAPAIGTFGSANA 673
+A +++D +K L N +G +LL+T+ + + VA I A T N
Sbjct: 234 QTIASASDDKTVK-LWNRNG-QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR 291
Query: 674 NVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS-RIWKLTEITEPSQCRSLR 732
N G L T ++++ G++ F+ IA + +K+ ++W R+ +
Sbjct: 292 N-GQLLQTLTGHSSSVWGVA-----FSPDGQTIASASDDKTVKLWN----------RNGQ 335
Query: 733 LPDNLTAMRVS--RLIYTNSGLAILALASNAVHKLWKWPRN------------------- 771
LT S + ++ G I + + + KLW RN
Sbjct: 336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAF 393
Query: 772 --ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGK- 828
+ + A+ ++ +LW +L T T +V A S +D + SAS K
Sbjct: 394 SPDGQTIASASDDKTVKLWNRNGQLLQTL----TGHSSSVWGVAFSPDDQTIASASDDKT 449
Query: 829 ISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG 888
+ L+N D IA +D +++++N R ++ L G
Sbjct: 450 VKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 506
Query: 889 HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG 921
H + G+AFS + S+ D + +W+ +G
Sbjct: 507 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 539
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 63/149 (42%), Gaps = 12/149 (8%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D IA +D +++++N R ++ L GH + G+AFS + S+ D + +W+
Sbjct: 273 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331
Query: 919 TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFV 978
+G + L G ++S V F D + + + + + L+
Sbjct: 332 RNG------QHLQTLTGHSSSVWG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 382
Query: 979 PREASGPITHATYSCDSQSIYVAFEEGSV 1007
+S + +S D Q+I A ++ +V
Sbjct: 383 GHSSS--VRGVAFSPDGQTIASASDDKTV 409
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 100
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 101 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 500 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 557
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 157 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 210
Query: 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 617
V V+F LAA + +K WD L + + F+ G
Sbjct: 211 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 270
Query: 618 ILLAVSTNDNGIKILANADGIRLLRTVESRT 648
VS +++ + + N +++ ++ T
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 301
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D+N++ +D +++I++V + LKGH + F+ N++VS D + +W
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 919 TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL-AVHETQIAIYEAPKLECLKQF 977
K T+P A + + V F+ D + ++ + ++ I++ +CLK
Sbjct: 158 V----KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Query: 978 VPREASGPITHATYSCDSQSIYVA 1001
+ + + P++ +S + + I A
Sbjct: 210 IDDD-NPPVSFVKFSPNGKYILAA 232
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 856 HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLC 915
+PQ N I++ G D S++I++V+ + L H ++ + F+ +++VSS D
Sbjct: 138 NPQSNLIVS-GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 196
Query: 916 VWSTDGWEKQASKFLTIPNGRTASALAD------TRVQFHLDQTHLLAVH-ETQIAIYEA 968
+W T +G+ L D + V+F + ++LA + + +++
Sbjct: 197 IWDT-------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 243
Query: 969 PKLECLKQFVPREASGPITHATYS 992
K +CLK + + A +S
Sbjct: 244 SKGKCLKTYTGHKNEKYCIFANFS 267
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 98/258 (37%), Gaps = 42/258 (16%)
Query: 275 FGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQIL 334
GISD + N+L A ++L S+ KT+ + V +F+P Q L
Sbjct: 88 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK---GHSNYVFCCNFNP-QSNL 143
Query: 335 LVVGTNMGDVMLWEVGSRE----------------------RIAVKSF----KVWELGAC 368
+V G+ V +W+V + + I S+ ++W+
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA-- 201
Query: 369 SMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGS 428
S +L D V+ V +SP+G A + + L+ Y G L+ + G
Sbjct: 202 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------TYTGH 255
Query: 429 VNDLAFSYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 484
N+ + N ++ +V+ ED ++ +W+ T +GH V S H ENI
Sbjct: 256 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 315
Query: 485 QFIFSTATDGKIKAWLYD 502
+ D IK W D
Sbjct: 316 IASAALENDKTIKLWKSD 333
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 7/140 (5%)
Query: 786 QLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGG---KISLFNXXXXXXXXX 842
++W SG + I D NP V S N Y+++A+ K+ ++
Sbjct: 196 RIWDTASGQCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 253
Query: 843 XXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTL 902
I G ED+ + I+N++ E+ KL+GH + A T
Sbjct: 254 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 313
Query: 903 NVLVSSGA--DSQLCVWSTD 920
N++ S+ D + +W +D
Sbjct: 314 NIIASAALENDKTIKLWKSD 333
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
+A D I+I+ + + + GH+ I+ +A+S+ N+LVS+ D L +W
Sbjct: 60 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 114
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 102
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 103 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 158
Query: 500 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 557
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 159 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 212
Query: 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 617
V V+F LAA + +K WD L + + F+ G
Sbjct: 213 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 272
Query: 618 ILLAVSTNDNGIKILANADGIRLLRTVESRT 648
VS +++ + + N +++ ++ T
Sbjct: 273 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 303
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D+N++ +D +++I++V + LKGH + F+ N++VS D + +W
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 159
Query: 919 TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL-AVHETQIAIYEAPKLECLKQF 977
K T+P A + + V F+ D + ++ + ++ I++ +CLK
Sbjct: 160 V----KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 211
Query: 978 VPREASGPITHATYSCDSQSIYVA 1001
+ + + P++ +S + + I A
Sbjct: 212 IDDD-NPPVSFVKFSPNGKYILAA 234
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 856 HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLC 915
+PQ N I++ G D S++I++V+ + L H ++ + F+ +++VSS D
Sbjct: 140 NPQSNLIVS-GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 198
Query: 916 VWSTDGWEKQASKFLTIPNGRTASALAD------TRVQFHLDQTHLLAVH-ETQIAIYEA 968
+W T +G+ L D + V+F + ++LA + + +++
Sbjct: 199 IWDT-------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 245
Query: 969 PKLECLKQFVPREASGPITHATYS 992
K +CLK + + A +S
Sbjct: 246 SKGKCLKTYTGHKNEKYCIFANFS 269
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 98/258 (37%), Gaps = 42/258 (16%)
Query: 275 FGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQIL 334
GISD + N+L A ++L S+ KT+ + V +F+P Q L
Sbjct: 90 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK---GHSNYVFCCNFNP-QSNL 145
Query: 335 LVVGTNMGDVMLWEVGSRE----------------------RIAVKSF----KVWELGAC 368
+V G+ V +W+V + + I S+ ++W+
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA-- 203
Query: 369 SMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGS 428
S +L D V+ V +SP+G A + + L+ Y G L+ + G
Sbjct: 204 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------TYTGH 257
Query: 429 VNDLAFSYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 484
N+ + N ++ +V+ ED ++ +W+ T +GH V S H ENI
Sbjct: 258 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 317
Query: 485 QFIFSTATDGKIKAWLYD 502
+ D IK W D
Sbjct: 318 IASAALENDKTIKLWKSD 335
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 7/140 (5%)
Query: 786 QLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGG---KISLFNXXXXXXXXX 842
++W SG + I D NP V S N Y+++A+ K+ ++
Sbjct: 198 RIWDTASGQCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 255
Query: 843 XXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTL 902
I G ED+ + I+N++ E+ KL+GH + A T
Sbjct: 256 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 315
Query: 903 NVLVSSGA--DSQLCVWSTD 920
N++ S+ D + +W +D
Sbjct: 316 NIIASAALENDKTIKLWKSD 335
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
+A D I+I+ + + + GH+ I+ +A+S+ N+LVS+ D L +W
Sbjct: 62 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 116
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 84
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 85 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 500 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 557
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 141 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 194
Query: 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 617
V V+F LAA + +K WD L + + F+ G
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 254
Query: 618 ILLAVSTNDNGIKILANADGIRLLRTVESRT 648
VS +++ + + N +++ ++ T
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D+N++ +D +++I++V + LKGH + F+ N++VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 919 TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL-AVHETQIAIYEAPKLECLKQF 977
K T+P A + + V F+ D + ++ + ++ I++ +CLK
Sbjct: 142 V----KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 978 VPREASGPITHATYSCDSQSIYVA 1001
+ + + P++ +S + + I A
Sbjct: 194 IDDD-NPPVSFVKFSPNGKYILAA 216
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 856 HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLC 915
+PQ N I++ G D S++I++V+ + L H ++ + F+ +++VSS D
Sbjct: 122 NPQSNLIVS-GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 916 VWSTDGWEKQASKFLTIPNGRTASALAD------TRVQFHLDQTHLLAVH-ETQIAIYEA 968
+W T +G+ L D + V+F + ++LA + + +++
Sbjct: 181 IWDT-------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Query: 969 PKLECLKQFVPREASGPITHATYS 992
K +CLK + + A +S
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFS 251
Score = 36.6 bits (83), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 98/258 (37%), Gaps = 42/258 (16%)
Query: 275 FGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQIL 334
GISD + N+L A ++L S+ KT+ + V +F+P Q L
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK---GHSNYVFCCNFNP-QSNL 127
Query: 335 LVVGTNMGDVMLWEVGSRE----------------------RIAVKSF----KVWELGAC 368
+V G+ V +W+V + + I S+ ++W+
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA-- 185
Query: 369 SMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGS 428
S +L D V+ V +SP+G A + + L+ Y G L+ + G
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------TYTGH 239
Query: 429 VNDLAFSYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 484
N+ + N ++ +V+ ED ++ +W+ T +GH V S H ENI
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 299
Query: 485 QFIFSTATDGKIKAWLYD 502
+ D IK W D
Sbjct: 300 IASAALENDKTIKLWKSD 317
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 71/330 (21%), Positives = 122/330 (36%), Gaps = 51/330 (15%)
Query: 603 GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVA----SAA 658
G +A ++F+ G LA S+ D IKI DG + +T+ S VA S
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNL 85
Query: 659 IVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND--SRNFTDVKPKIADEAVEKS-R 715
+V A T + + G L + G SN NF I + ++S R
Sbjct: 86 LVSASDDKTLKIWDVSSGKCL-------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 716 IWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNS 775
IW + + +C LP + + VS + + G I++ + + + ++W
Sbjct: 139 IWDV----KTGKCLK-TLPAH--SDPVSAVHFNRDGSLIVSSSYDGLCRIW--------- 182
Query: 776 TGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGG---KISLF 832
SG + I D NP V S N Y+++A+ K+ +
Sbjct: 183 -------------DTASGQCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDY 227
Query: 833 NXXXXXXXXXXXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR 892
+ I G ED+ + I+N++ E+ KL+GH
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287
Query: 893 ITGLAFSNTLNVLVSSGA--DSQLCVWSTD 920
+ A T N++ S+ D + +W +D
Sbjct: 288 VISTACHPTENIIASAALENDKTIKLWKSD 317
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 84
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 85 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 500 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 557
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 141 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 194
Query: 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 617
V V+F LAA + +K WD L + + F+ G
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 254
Query: 618 ILLAVSTNDNGIKILANADGIRLLRTVESRT 648
VS +++ + + N +++ ++ T
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D+N++ +D +++I++V + LKGH + F+ N++VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 919 TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL-AVHETQIAIYEAPKLECLKQF 977
K T+P A + + V F+ D + ++ + ++ I++ +CLK
Sbjct: 142 V----KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 978 VPREASGPITHATYSCDSQSIYVA 1001
+ + + P++ +S + + I A
Sbjct: 194 IDDD-NPPVSFVKFSPNGKYILAA 216
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 856 HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLC 915
+PQ N I++ G D S++I++V+ + L H ++ + F+ +++VSS D
Sbjct: 122 NPQSNLIVS-GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 916 VWSTDGWEKQASKFLTIPNGRTASALAD------TRVQFHLDQTHLLAVH-ETQIAIYEA 968
+W T +G+ L D + V+F + ++LA + + +++
Sbjct: 181 IWDT-------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Query: 969 PKLECLKQFVPREASGPITHATYS 992
K +CLK + + A +S
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFS 251
Score = 36.6 bits (83), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 98/258 (37%), Gaps = 42/258 (16%)
Query: 275 FGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQIL 334
GISD + N+L A ++L S+ KT+ + V +F+P Q L
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK---GHSNYVFCCNFNP-QSNL 127
Query: 335 LVVGTNMGDVMLWEVGSRE----------------------RIAVKSF----KVWELGAC 368
+V G+ V +W+V + + I S+ ++W+
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA-- 185
Query: 369 SMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGS 428
S +L D V+ V +SP+G A + + L+ Y G L+ + G
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------TYTGH 239
Query: 429 VNDLAFSYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 484
N+ + N ++ +V+ ED ++ +W+ T +GH V S H ENI
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 299
Query: 485 QFIFSTATDGKIKAWLYD 502
+ D IK W D
Sbjct: 300 IASAALENDKTIKLWKSD 317
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 71/330 (21%), Positives = 122/330 (36%), Gaps = 51/330 (15%)
Query: 603 GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVA----SAA 658
G +A ++F+ G LA S+ D IKI DG + +T+ S VA S
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNL 85
Query: 659 IVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND--SRNFTDVKPKIADEAVEKS-R 715
+V A T + + G L + G SN NF I + ++S R
Sbjct: 86 LVSASDDKTLKIWDVSSGKCL-------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 716 IWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNS 775
IW + + +C LP + + VS + + G I++ + + + ++W
Sbjct: 139 IWDV----KTGKCLK-TLPAH--SDPVSAVHFNRDGSLIVSSSYDGLCRIW--------- 182
Query: 776 TGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGG---KISLF 832
SG + I D NP V S N Y+++A+ K+ +
Sbjct: 183 -------------DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDY 227
Query: 833 NXXXXXXXXXXXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR 892
+ I G ED+ + I+N++ E+ KL+GH
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287
Query: 893 ITGLAFSNTLNVLVSSGA--DSQLCVWSTD 920
+ A T N++ S+ D + +W +D
Sbjct: 288 VISTACHPTENIIASAALENDKTIKLWKSD 317
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 15/212 (7%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 74
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 75 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 130
Query: 500 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 557
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 131 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 184
Query: 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 589
V V+F LAA + +K WD
Sbjct: 185 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 216
Score = 37.7 bits (86), Expect = 0.032, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
Query: 375 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF 434
+L D V+ V +SP+G A + + L+ Y G L+ + G N+
Sbjct: 182 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------TGHKNEKYC 235
Query: 435 SYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST 490
+ N ++ +V+ ED ++ +W+ T +GH V S H ENI +
Sbjct: 236 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL 295
Query: 491 ATDGKIKAWLYD 502
D IK W D
Sbjct: 296 ENDKTIKLWKSD 307
Score = 37.4 bits (85), Expect = 0.050, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D+N++ +D +++I++V + LKGH + F+ N++VS D + +W
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131
Query: 919 TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL-AVHETQIAIYEAPKLECLKQF 977
K T+P A + + V F+ D + ++ + ++ I++ +CLK
Sbjct: 132 V----KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 183
Query: 978 VPREASGPITHATYSCDSQSIYVA 1001
+ + + P++ +S + + I A
Sbjct: 184 IDDD-NPPVSFVKFSPNGKYILAA 206
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 21/129 (16%)
Query: 856 HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLC 915
+PQ N I++ G D S++I++V+ + L H ++ + F+ +++VSS D
Sbjct: 112 NPQSNLIVS-GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 170
Query: 916 VWSTDGWEKQASKFLTIPNGRTASALAD------TRVQFHLDQTHLLAVH-ETQIAIYEA 968
+W T +G+ L D + V+F + ++LA + + +++
Sbjct: 171 IWDT-------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 217
Query: 969 PKLECLKQF 977
K +CLK +
Sbjct: 218 SKGKCLKTY 226
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGA--DSQLCVWSTD 920
I G ED+ + I+N++ E+ KL+GH + A T N++ S+ D + +W +D
Sbjct: 248 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 307
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
+A D I+I+ + + + GH+ I+ +A+S+ N+LVS+ D L +W
Sbjct: 34 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 88
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 15/212 (7%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 77
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 78 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 500 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 557
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 134 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 187
Query: 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 589
V V+F LAA + +K WD
Sbjct: 188 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 219
Score = 37.7 bits (86), Expect = 0.032, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
Query: 375 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF 434
+L D V+ V +SP+G A + + L+ Y G L+ + G N+
Sbjct: 185 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------TGHKNEKYC 238
Query: 435 SYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST 490
+ N ++ +V+ ED ++ +W+ T +GH V S H ENI +
Sbjct: 239 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL 298
Query: 491 ATDGKIKAWLYD 502
D IK W D
Sbjct: 299 ENDKTIKLWKSD 310
Score = 37.4 bits (85), Expect = 0.050, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D+N++ +D +++I++V + LKGH + F+ N++VS D + +W
Sbjct: 75 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 134
Query: 919 TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL-AVHETQIAIYEAPKLECLKQF 977
K T+P A + + V F+ D + ++ + ++ I++ +CLK
Sbjct: 135 V----KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 186
Query: 978 VPREASGPITHATYSCDSQSIYVA 1001
+ + + P++ +S + + I A
Sbjct: 187 IDDD-NPPVSFVKFSPNGKYILAA 209
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 21/129 (16%)
Query: 856 HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLC 915
+PQ N I++ G D S++I++V+ + L H ++ + F+ +++VSS D
Sbjct: 115 NPQSNLIVS-GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 173
Query: 916 VWSTDGWEKQASKFLTIPNGRTASALAD------TRVQFHLDQTHLLAVH-ETQIAIYEA 968
+W T +G+ L D + V+F + ++LA + + +++
Sbjct: 174 IWDT-------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 220
Query: 969 PKLECLKQF 977
K +CLK +
Sbjct: 221 SKGKCLKTY 229
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGA--DSQLCVWSTD 920
I G ED+ + I+N++ E+ KL+GH + A T N++ S+ D + +W +D
Sbjct: 251 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 310
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
+A D I+I+ + + + GH+ I+ +A+S+ N+LVS+ D L +W
Sbjct: 37 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 91
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 15/212 (7%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 78
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 79 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 500 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 557
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 135 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 188
Query: 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 589
V V+F LAA + +K WD
Sbjct: 189 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 37.7 bits (86), Expect = 0.035, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
Query: 375 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF 434
+L D V+ V +SP+G A + + L+ Y G L+ + G N+
Sbjct: 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------TGHKNEKYC 239
Query: 435 SYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST 490
+ N ++ +V+ ED ++ +W+ T +GH V S H ENI +
Sbjct: 240 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL 299
Query: 491 ATDGKIKAWLYD 502
D IK W D
Sbjct: 300 ENDKTIKLWKSD 311
Score = 37.0 bits (84), Expect = 0.053, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D+N++ +D +++I++V + LKGH + F+ N++VS D + +W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 919 TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL-AVHETQIAIYEAPKLECLKQF 977
K T+P A + + V F+ D + ++ + ++ I++ +CLK
Sbjct: 136 V----KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Query: 978 VPREASGPITHATYSCDSQSIYVA 1001
+ + + P++ +S + + I A
Sbjct: 188 IDDD-NPPVSFVKFSPNGKYILAA 210
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 21/129 (16%)
Query: 856 HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLC 915
+PQ N I++ G D S++I++V+ + L H ++ + F+ +++VSS D
Sbjct: 116 NPQSNLIVS-GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174
Query: 916 VWSTDGWEKQASKFLTIPNGRTASALAD------TRVQFHLDQTHLLAVH-ETQIAIYEA 968
+W T +G+ L D + V+F + ++LA + + +++
Sbjct: 175 IWDT-------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221
Query: 969 PKLECLKQF 977
K +CLK +
Sbjct: 222 SKGKCLKTY 230
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGA--DSQLCVWSTD 920
I G ED+ + I+N++ E+ KL+GH + A T N++ S+ D + +W +D
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
+A D I+I+ + + + GH+ I+ +A+S+ N+LVS+ D L +W
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 15/212 (7%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 78
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 79 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 500 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 557
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 135 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 188
Query: 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 589
V V+F LAA + +K WD
Sbjct: 189 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 37.7 bits (86), Expect = 0.037, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
Query: 375 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF 434
+L D V+ V +SP+G A + + L+ Y G L+ + G N+
Sbjct: 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------TGHKNEKYC 239
Query: 435 SYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST 490
+ N ++ +V+ ED ++ +W+ T +GH V S H ENI +
Sbjct: 240 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL 299
Query: 491 ATDGKIKAWLYD 502
D IK W D
Sbjct: 300 ENDKTIKLWKSD 311
Score = 37.0 bits (84), Expect = 0.058, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D+N++ +D +++I++V + LKGH + F+ N++VS D + +W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 919 TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL-AVHETQIAIYEAPKLECLKQF 977
K T+P A + + V F+ D + ++ + ++ I++ +CLK
Sbjct: 136 V----KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Query: 978 VPREASGPITHATYSCDSQSIYVA 1001
+ + + P++ +S + + I A
Sbjct: 188 IDDD-NPPVSFVKFSPNGKYILAA 210
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 21/129 (16%)
Query: 856 HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLC 915
+PQ N I++ G D S++I++V+ + L H ++ + F+ +++VSS D
Sbjct: 116 NPQSNLIVS-GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174
Query: 916 VWSTDGWEKQASKFLTIPNGRTASALAD------TRVQFHLDQTHLLAVH-ETQIAIYEA 968
+W T +G+ L D + V+F + ++LA + + +++
Sbjct: 175 IWDT-------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221
Query: 969 PKLECLKQF 977
K +CLK +
Sbjct: 222 SKGKCLKTY 230
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGA--DSQLCVWSTD 920
I G ED+ + I+N++ E+ KL+GH + A T N++ S+ D + +W +D
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
+A D I+I+ + + + GH+ I+ +A+S+ N+LVS+ D L +W
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 15/212 (7%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 79
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 80 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 135
Query: 500 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 557
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 136 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 189
Query: 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 589
V V+F LAA + +K WD
Sbjct: 190 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 221
Score = 37.7 bits (86), Expect = 0.037, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
Query: 375 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF 434
+L D V+ V +SP+G A + + L+ Y G L+ + G N+
Sbjct: 187 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------TGHKNEKYC 240
Query: 435 SYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST 490
+ N ++ +V+ ED ++ +W+ T +GH V S H ENI +
Sbjct: 241 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL 300
Query: 491 ATDGKIKAWLYD 502
D IK W D
Sbjct: 301 ENDKTIKLWKSD 312
Score = 37.0 bits (84), Expect = 0.062, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D+N++ +D +++I++V + LKGH + F+ N++VS D + +W
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136
Query: 919 TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL-AVHETQIAIYEAPKLECLKQF 977
K T+P A + + V F+ D + ++ + ++ I++ +CLK
Sbjct: 137 V----KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 188
Query: 978 VPREASGPITHATYSCDSQSIYVA 1001
+ + + P++ +S + + I A
Sbjct: 189 IDDD-NPPVSFVKFSPNGKYILAA 211
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 21/129 (16%)
Query: 856 HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLC 915
+PQ N I++ G D S++I++V+ + L H ++ + F+ +++VSS D
Sbjct: 117 NPQSNLIVS-GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 175
Query: 916 VWSTDGWEKQASKFLTIPNGRTASALAD------TRVQFHLDQTHLLAVH-ETQIAIYEA 968
+W T +G+ L D + V+F + ++LA + + +++
Sbjct: 176 IWDT-------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 222
Query: 969 PKLECLKQF 977
K +CLK +
Sbjct: 223 SKGKCLKTY 231
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGA--DSQLCVWSTD 920
I G ED+ + I+N++ E+ KL+GH + A T N++ S+ D + +W +D
Sbjct: 253 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 312
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
+A D I+I+ + + + GH+ I+ +A+S+ N+LVS+ D L +W
Sbjct: 39 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 93
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 95
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 96 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 151
Query: 500 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 557
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 152 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 205
Query: 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 617
V V+F LAA + +K WD L + + F+ G
Sbjct: 206 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 265
Query: 618 ILLAVSTNDNGIKILANADGIRLLRTVESRT 648
VS +++ + + N +++ ++ T
Sbjct: 266 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 296
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D+N++ +D +++I++V + LKGH + F+ N++VS D + +W
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 152
Query: 919 TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL-AVHETQIAIYEAPKLECLKQF 977
K T+P A + + V F+ D + ++ + ++ I++ +CLK
Sbjct: 153 V----KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 204
Query: 978 VPREASGPITHATYSCDSQSIYVA 1001
+ + + P++ +S + + I A
Sbjct: 205 IDDD-NPPVSFVKFSPNGKYILAA 227
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 856 HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLC 915
+PQ N I++ G D S++I++V+ + L H ++ + F+ +++VSS D
Sbjct: 133 NPQSNLIVS-GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 191
Query: 916 VWSTDGWEKQASKFLTIPNGRTASALAD------TRVQFHLDQTHLLAVH-ETQIAIYEA 968
+W T +G+ L D + V+F + ++LA + + +++
Sbjct: 192 IWDT-------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 238
Query: 969 PKLECLKQFVPREASGPITHATYS 992
K +CLK + + A +S
Sbjct: 239 SKGKCLKTYTGHKNEKYCIFANFS 262
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 98/258 (37%), Gaps = 42/258 (16%)
Query: 275 FGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQIL 334
GISD + N+L A ++L S+ KT+ + V +F+P Q L
Sbjct: 83 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK---GHSNYVFCCNFNP-QSNL 138
Query: 335 LVVGTNMGDVMLWEVGSRE----------------------RIAVKSF----KVWELGAC 368
+V G+ V +W+V + + I S+ ++W+
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA-- 196
Query: 369 SMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGS 428
S +L D V+ V +SP+G A + + L+ Y G L+ + G
Sbjct: 197 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------TYTGH 250
Query: 429 VNDLAFSYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 484
N+ + N ++ +V+ ED ++ +W+ T +GH V S H ENI
Sbjct: 251 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 310
Query: 485 QFIFSTATDGKIKAWLYD 502
+ D IK W D
Sbjct: 311 IASAALENDKTIKLWKSD 328
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 71/330 (21%), Positives = 122/330 (36%), Gaps = 51/330 (15%)
Query: 603 GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVA----SAA 658
G +A ++F+ G LA S+ D IKI DG + +T+ S VA S
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNL 96
Query: 659 IVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND--SRNFTDVKPKIADEAVEKS-R 715
+V A T + + G L + G SN NF I + ++S R
Sbjct: 97 LVSASDDKTLKIWDVSSGKCL-------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 149
Query: 716 IWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNS 775
IW + + +C LP + + VS + + G I++ + + +
Sbjct: 150 IWDV----KTGKCLK-TLPAH--SDPVSAVHFNRDGSLIVSSSYDGL------------- 189
Query: 776 TGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGG---KISLF 832
++W SG + I D NP V S N Y+++A+ K+ +
Sbjct: 190 ---------CRIWDTASGQCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDY 238
Query: 833 NXXXXXXXXXXXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR 892
+ I G ED+ + I+N++ E+ KL+GH
Sbjct: 239 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 298
Query: 893 ITGLAFSNTLNVLVSSGA--DSQLCVWSTD 920
+ A T N++ S+ D + +W +D
Sbjct: 299 VISTACHPTENIIASAALENDKTIKLWKSD 328
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 83
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 84 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 139
Query: 500 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 557
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 140 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 193
Query: 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 617
V V+F LAA + +K WD L + + F+ G
Sbjct: 194 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 253
Query: 618 ILLAVSTNDNGIKILANADGIRLLRTVESRT 648
VS +++ + + N +++ ++ T
Sbjct: 254 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 284
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D+N++ +D +++I++V + LKGH + F+ N++VS D + +W
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 140
Query: 919 TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL-AVHETQIAIYEAPKLECLKQF 977
K T+P A + + V F+ D + ++ + ++ I++ +CLK
Sbjct: 141 V----KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 192
Query: 978 VPREASGPITHATYSCDSQSIYVA 1001
+ + + P++ +S + + I A
Sbjct: 193 IDDD-NPPVSFVKFSPNGKYILAA 215
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 856 HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLC 915
+PQ N I++ G D S++I++V+ + L H ++ + F+ +++VSS D
Sbjct: 121 NPQSNLIVS-GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 179
Query: 916 VWSTDGWEKQASKFLTIPNGRTASALAD------TRVQFHLDQTHLLAVH-ETQIAIYEA 968
+W T +G+ L D + V+F + ++LA + + +++
Sbjct: 180 IWDT-------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 226
Query: 969 PKLECLKQFVPREASGPITHATYS 992
K +CLK + + A +S
Sbjct: 227 SKGKCLKTYTGHKNEKYCIFANFS 250
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 98/258 (37%), Gaps = 42/258 (16%)
Query: 275 FGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQIL 334
GISD + N+L A ++L S+ KT+ + V +F+P Q L
Sbjct: 71 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK---GHSNYVFCCNFNP-QSNL 126
Query: 335 LVVGTNMGDVMLWEVGSRE----------------------RIAVKSF----KVWELGAC 368
+V G+ V +W+V + + I S+ ++W+
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA-- 184
Query: 369 SMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGS 428
S +L D V+ V +SP+G A + + L+ Y G L+ + G
Sbjct: 185 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------TYTGH 238
Query: 429 VNDLAFSYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 484
N+ + N ++ +V+ ED ++ +W+ T +GH V S H ENI
Sbjct: 239 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 298
Query: 485 QFIFSTATDGKIKAWLYD 502
+ D IK W D
Sbjct: 299 IASAALENDKTIKLWKSD 316
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 7/140 (5%)
Query: 786 QLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGG---KISLFNXXXXXXXXX 842
++W SG + I D NP V S N Y+++A+ K+ ++
Sbjct: 179 RIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 236
Query: 843 XXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTL 902
I G ED+ + I+N++ E+ KL+GH + A T
Sbjct: 237 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 296
Query: 903 NVLVSSGA--DSQLCVWSTD 920
N++ S+ D + +W +D
Sbjct: 297 NIIASAALENDKTIKLWKSD 316
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
+A D I+I+ + + + GH+ I+ +A+S+ N+LVS+ D L +W
Sbjct: 43 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 97
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 84
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 85 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 500 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 557
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 141 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 194
Query: 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 617
V V+F LAA + +K WD L + + F+ G
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 254
Query: 618 ILLAVSTNDNGIKILANADGIRLLRTVESRT 648
VS +++ + + N +++ ++ T
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D+N++ +D +++I++V + LKGH + F+ N++VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 919 TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL-AVHETQIAIYEAPKLECLKQF 977
K T+P A + + V F+ D + ++ + ++ I++ +CLK
Sbjct: 142 V----KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 978 VPREASGPITHATYSCDSQSIYVA 1001
+ + + P++ +S + + I A
Sbjct: 194 IDDD-NPPVSFVKFSPNGKYILAA 216
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 856 HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLC 915
+PQ N I++ G D S++I++V+ + L H ++ + F+ +++VSS D
Sbjct: 122 NPQSNLIVS-GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 916 VWSTDGWEKQASKFLTIPNGRTASALAD------TRVQFHLDQTHLLAVH-ETQIAIYEA 968
+W T +G+ L D + V+F + ++LA + + +++
Sbjct: 181 IWDT-------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Query: 969 PKLECLKQFVPREASGPITHATYS 992
K +CLK + + A +S
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFS 251
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 98/258 (37%), Gaps = 42/258 (16%)
Query: 275 FGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQIL 334
GISD + N+L A ++L S+ KT+ + V +F+P Q L
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK---GHSNYVFCCNFNP-QSNL 127
Query: 335 LVVGTNMGDVMLWEVGSRE----------------------RIAVKSF----KVWELGAC 368
+V G+ V +W+V + + I S+ ++W+
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA-- 185
Query: 369 SMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGS 428
S +L D V+ V +SP+G A + + L+ Y G L+ + G
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------TYTGH 239
Query: 429 VNDLAFSYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 484
N+ + N ++ +V+ ED ++ +W+ T +GH V S H ENI
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 299
Query: 485 QFIFSTATDGKIKAWLYD 502
+ D IK W D
Sbjct: 300 IASAALENDKTIKLWKSD 317
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 7/140 (5%)
Query: 786 QLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGG---KISLFNXXXXXXXXX 842
++W SG + I D NP V S N Y+++A+ K+ ++
Sbjct: 180 RIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 843 XXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTL 902
I G ED+ + I+N++ E+ KL+GH + A T
Sbjct: 238 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 297
Query: 903 NVLVSSGA--DSQLCVWSTD 920
N++ S+ D + +W +D
Sbjct: 298 NIIASAALENDKTIKLWKSD 317
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
+A D I+I+ + + + GH+ I+ +A+S+ N+LVS+ D L +W
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 98
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 115/271 (42%), Gaps = 15/271 (5%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 81
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
L V+ +D+ +K+WD +G +GH + V+ C + I S + D ++ W
Sbjct: 82 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW 137
Query: 500 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 557
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 138 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 191
Query: 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 617
V V+F LAA + +K WD L + + F+ G
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 618 ILLAVSTNDNGIKILANADGIRLLRTVESRT 648
VS +++ + + N +++ ++ T
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D+N++ +D +++I++V + LKGH + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 919 TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL-AVHETQIAIYEAPKLECLKQF 977
K T+P A + + V F+ D + ++ + ++ I++ +CLK
Sbjct: 139 V----KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 978 VPREASGPITHATYSCDSQSIYVA 1001
+ + + P++ +S + + I A
Sbjct: 191 IDDD-NPPVSFVKFSPNGKYILAA 213
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 856 HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLC 915
+PQ N I++ G D S++I++V+ + L H ++ + F+ +++VSS D
Sbjct: 119 NPQSNLIVS-GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 916 VWSTDGWEKQASKFLTIPNGRTASALAD------TRVQFHLDQTHLLAVH-ETQIAIYEA 968
+W T +G+ L D + V+F + ++LA + + +++
Sbjct: 178 IWDT-------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 969 PKLECLKQFVPREASGPITHATYS 992
K +CLK + + A +S
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFS 248
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 98/260 (37%), Gaps = 42/260 (16%)
Query: 273 RPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQ 332
GISD + N+L A ++L S+ KT+ + V +F+P Q
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK---GHSNYVFCCNFNP-QS 122
Query: 333 ILLVVGTNMGDVMLWEVGSRE----------------------RIAVKSF----KVWELG 366
L+V G+ V +W+V + + I S+ ++W+
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 367 ACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHV 426
S +L D V+ V +SP+G A + + L+ Y G L+ +
Sbjct: 183 --SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------TYT 234
Query: 427 GSVNDLAFSYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE 482
G N+ + N ++ +V+ ED ++ +W+ T +GH V S H E
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 483 NIQFIFSTATDGKIKAWLYD 502
NI + D IK W D
Sbjct: 295 NIIASAALENDKTIKLWKSD 314
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 71/330 (21%), Positives = 122/330 (36%), Gaps = 51/330 (15%)
Query: 603 GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVA----SAA 658
G +A ++F+ G LA S+ D IKI DG + +T+ S VA S
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNL 82
Query: 659 IVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND--SRNFTDVKPKIADEAVEKS-R 715
+V A T + + G L + G SN NF I + ++S R
Sbjct: 83 LVSASDDKTLKIWDVSSGKCL-------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 716 IWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNS 775
IW + + +C LP + + VS + + G I++ + + +
Sbjct: 136 IWDV----KTGKCLK-TLPAH--SDPVSAVHFNRDGSLIVSSSYDGL------------- 175
Query: 776 TGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGG---KISLF 832
++W SG + I D NP V S N Y+++A+ K+ +
Sbjct: 176 ---------CRIWDTASGQCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 833 NXXXXXXXXXXXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR 892
+ I G ED+ + I+N++ E+ KL+GH
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 284
Query: 893 ITGLAFSNTLNVLVSSGA--DSQLCVWSTD 920
+ A T N++ S+ D + +W +D
Sbjct: 285 VISTACHPTENIIASAALENDKTIKLWKSD 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 115/271 (42%), Gaps = 15/271 (5%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 81
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
L V+ +D+ +K+WD +G +GH + V+ C + I S + D ++ W
Sbjct: 82 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW 137
Query: 500 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 557
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 138 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 191
Query: 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 617
V V+F LAA + +K WD L + + F+ G
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 618 ILLAVSTNDNGIKILANADGIRLLRTVESRT 648
VS +++ + + N +++ ++ T
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D+N++ +D +++I++V + LKGH + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 919 TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL-AVHETQIAIYEAPKLECLKQF 977
K T+P A + + V F+ D + ++ + ++ I++ +CLK
Sbjct: 139 V----KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 978 VPREASGPITHATYSCDSQSIYVA 1001
+ + + P++ +S + + I A
Sbjct: 191 IDDD-NPPVSFVKFSPNGKYILAA 213
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 856 HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLC 915
+PQ N I++ G D S++I++V+ + L H ++ + F+ +++VSS D
Sbjct: 119 NPQSNLIVS-GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 916 VWSTDGWEKQASKFLTIPNGRTASALAD------TRVQFHLDQTHLLAVH-ETQIAIYEA 968
+W T +G+ L D + V+F + ++LA + + +++
Sbjct: 178 IWDT-------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 969 PKLECLKQFVPREASGPITHATYS 992
K +CLK + + A +S
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFS 248
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 5/126 (3%)
Query: 786 QLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGG---KISLFNXXXXXXXXX 842
++W SG + I D NP V S N Y+++A+ K+ ++
Sbjct: 177 RIWDTASGQCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 843 XXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTL 902
I G ED+ + I+N++ E+ KL+GH + A T
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 903 NVLVSS 908
N++ S+
Sbjct: 295 NIIASA 300
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 92/242 (38%), Gaps = 42/242 (17%)
Query: 273 RPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQ 332
GISD + N+L A ++L S+ KT+ + V +F+P Q
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK---GHSNYVFCCNFNP-QS 122
Query: 333 ILLVVGTNMGDVMLWEVGSRE----------------------RIAVKSF----KVWELG 366
L+V G+ V +W+V + + I S+ ++W+
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 367 ACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHV 426
S +L D V+ V +SP+G A + + L+ Y G L+ +
Sbjct: 183 --SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------TYT 234
Query: 427 GSVNDLAFSYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE 482
G N+ + N ++ +V+ ED ++ +W+ T +GH V S H E
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 483 NI 484
NI
Sbjct: 295 NI 296
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
+A D I+I+ + + + GH+ I+ +A+S+ N+LVS+ D L +W
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 95
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 115/271 (42%), Gaps = 15/271 (5%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 81
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
L V+ +D+ +K+WD +G +GH + V+ C + I S + D ++ W
Sbjct: 82 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW 137
Query: 500 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 557
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 138 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 191
Query: 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 617
V V+F LAA + +K WD L + + F+ G
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 618 ILLAVSTNDNGIKILANADGIRLLRTVESRT 648
VS +++ + + N +++ ++ T
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D+N++ +D +++I++V + LKGH + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 919 TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL-AVHETQIAIYEAPKLECLKQF 977
K T+P A + + V F+ D + ++ + ++ I++ +CLK
Sbjct: 139 V----KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 978 VPREASGPITHATYSCDSQSIYVA 1001
+ + + P++ +S + + I A
Sbjct: 191 IDDD-NPPVSFVKFSPNGKYILAA 213
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 856 HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLC 915
+PQ N I++ G D S++I++V+ + L H ++ + F+ +++VSS D
Sbjct: 119 NPQSNLIVS-GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 916 VWSTDGWEKQASKFLTIPNGRTASALAD------TRVQFHLDQTHLLAVH-ETQIAIYEA 968
+W T +G+ L D + V+F + ++LA + + +++
Sbjct: 178 IWDT-------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 969 PKLECLKQFVPREASGPITHATYS 992
K +CLK + + A +S
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFS 248
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 5/126 (3%)
Query: 786 QLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGG---KISLFNXXXXXXXXX 842
++W SG + I D NP V S N Y+++A+ K+ ++
Sbjct: 177 RIWDTASGQCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 843 XXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTL 902
I G ED+ + I+N++ E+ KL+GH + A T
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 903 NVLVSS 908
N++ S+
Sbjct: 295 NIIASA 300
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 98/260 (37%), Gaps = 42/260 (16%)
Query: 273 RPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQ 332
GISD + N+L A ++L S+ KT+ + V +F+P Q
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK---GHSNYVFCCNFNP-QS 122
Query: 333 ILLVVGTNMGDVMLWEVGSRE----------------------RIAVKSF----KVWELG 366
L+V G+ V +W+V + + I S+ ++W+
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 367 ACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHV 426
S +L D V+ V +SP+G A + + L+ Y G L+ +
Sbjct: 183 --SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------TYT 234
Query: 427 GSVNDLAFSYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE 482
G N+ + N ++ +V+ ED ++ +W+ T +GH V S H E
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 483 NIQFIFSTATDGKIKAWLYD 502
NI + D IK + D
Sbjct: 295 NIIASAALENDKTIKLYKSD 314
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
+A D I+I+ + + + GH+ I+ +A+S+ N+LVS+ D L +W
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 95
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 113/271 (41%), Gaps = 15/271 (5%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 81
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 82 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 500 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 557
D P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 138 --DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 191
Query: 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 617
V V+F LAA + +K WD L + + F+ G
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 618 ILLAVSTNDNGIKILANADGIRLLRTVESRT 648
VS +++ + + N +++ ++ T
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D+N++ +D +++I++V + LKGH + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 919 TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL-AVHETQIAIYEAPKLECLKQF 977
K T+P A + + V F+ D + ++ + ++ I++ +CLK
Sbjct: 139 V----KTGMCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 978 VPREASGPITHATYSCDSQSIYVA 1001
+ + + P++ +S + + I A
Sbjct: 191 IDDD-NPPVSFVKFSPNGKYILAA 213
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 384 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLS- 442
V+ V +SP+G A + + L+ Y G L+ + G N+ + N ++
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------TYTGHKNEKYCIFANFSVTG 251
Query: 443 ---VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
+V+ ED ++ +W+ T +GH V S H ENI + D IK W
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 500 LYD 502
D
Sbjct: 312 KSD 314
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGA--DSQLCVWSTD 920
I G ED+ + I+N++ E+ KL+GH + A T N++ S+ D + +W +D
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
+A D I+I+ + + + GH+ I+ +A+S+ N+LVS+ D L +W
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 95
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 84/207 (40%), Gaps = 29/207 (14%)
Query: 420 LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPH 479
L++ H G V L +++ +V+ DR ++VWD G ++FEGH S V +
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 480 HKENIQFIFSTATDGKIKAWLYDNLGSRVD----YDAP-----------------GHSST 518
+NI++I + + D + W S D +D P GH ++
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXAS 272
Query: 519 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLA 578
+ S G + S + L+ W+ ++ G R + +D + R ++
Sbjct: 273 VRTVSGHGNIVVSGSYDNT----LIVWDVAQXKCLYILSGHTDRIYSTI-YDHERKRCIS 327
Query: 579 AGDEFMIKFWDMDNVNLLASIDADGGL 605
A + I+ WD++N L ++ L
Sbjct: 328 ASXDTTIRIWDLENGELXYTLQGHTAL 354
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 436 YPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGK 495
Y +++ ++ D I++WD G Y +GH + V + + + +F+ S A DG
Sbjct: 318 YDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLL----RLSDKFLVSAAADGS 373
Query: 496 IKAWLYDNLGSRVDYDAPGHSSTMMAYSAD 525
I+ W ++ + Y S+ Y +D
Sbjct: 374 IRGWDANDYSRKFSYHHTNLSAITTFYVSD 403
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 85/207 (41%), Gaps = 29/207 (14%)
Query: 420 LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPH 479
L++ H G V L +++ +V+ DR ++VWD G ++FEGH S V +
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 480 HKENIQFIFSTATDGKIKAWLYDNLGSRVD----YDAP-----------------GHSST 518
+NI++I + + D + W S D +D P GH ++
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 519 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLA 578
+ S G + S + L+ W+ ++ G R + +D + R ++
Sbjct: 273 VRTVSGHGNIVVSGSYDNT----LIVWDVAQMKCLYILSGHTDRIYSTI-YDHERKRCIS 327
Query: 579 AGDEFMIKFWDMDNVNLLASIDADGGL 605
A + I+ WD++N L+ ++ L
Sbjct: 328 ASMDTTIRIWDLENGELMYTLQGHTAL 354
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 436 YPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGK 495
Y +++ ++ D I++WD G Y +GH + V + + + +F+ S A DG
Sbjct: 318 YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL----RLSDKFLVSAAADGS 373
Query: 496 IKAWLYDNLGSRVDYDAPGHSSTMMAYSAD 525
I+ W ++ + Y S+ Y +D
Sbjct: 374 IRGWDANDYSRKFSYHHTNLSAITTFYVSD 403
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 113/271 (41%), Gaps = 15/271 (5%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 81
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 82 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 500 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 557
D P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 138 --DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 191
Query: 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 617
V V+F LAA + +K WD L + + F+ G
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 618 ILLAVSTNDNGIKILANADGIRLLRTVESRT 648
VS +++ + + N +++ ++ T
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D+N++ +D +++I++V + LKGH + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 919 TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL-AVHETQIAIYEAPKLECLKQF 977
K T+P A + + V F+ D + ++ + ++ I++ +CLK
Sbjct: 139 V----KTGMCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 978 VPREASGPITHATYSCDSQSIYVA 1001
+ + + P++ +S + + I A
Sbjct: 191 IDDD-NPPVSFVKFSPNGKYILAA 213
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 384 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLS- 442
V+ V +SP+G A + + L+ Y G L+ + G N+ + N ++
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLK------TYTGHKNEKYCIFANFSVTG 251
Query: 443 ---VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
+V+ ED ++ +W+ T +GH V S H ENI + D IK W
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 500 LYD 502
D
Sbjct: 312 KSD 314
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGA--DSQLCVWSTD 920
I G ED+ + I+N++ E+ KL+GH + A T N++ S+ D + +W +D
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
+A D I+I+ + + + GH+ I+ +A+S+ N+LVS+ D L +W
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 95
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 14/183 (7%)
Query: 424 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV-YSICPHHKE 482
H V +AFS N+Q +V+ DR IK+W+ + K I EG E + C
Sbjct: 470 GHTKDVLSVAFSLDNRQ--IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP 527
Query: 483 NIQ--FIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGES 540
N I S + D +K W N R + +A S DG+ S G K+G
Sbjct: 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG--KDGVV 585
Query: 541 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMDNVNLLASI 599
L W+ +EG K+ Y + + F + NR+ L A E IK WD+++ +++ +
Sbjct: 586 LL--WDLAEG--KKLYSLEANSVIHALCF--SPNRYWLCAATEHGIKIWDLESKSIVEDL 639
Query: 600 DAD 602
D
Sbjct: 640 KVD 642
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 358 KSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELR 417
K+ KVW L C L+++L+ +T V+ V SPDG+L +V L+ G +L
Sbjct: 541 KTVKVWNLSNCK--LRSTLAG-HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY 597
Query: 418 NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 456
+ +EA+ ++ L FS PN+ + + IK+WD
Sbjct: 598 S---LEAN-SVIHALCFS-PNRYW--LCAATEHGIKIWD 629
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 66/158 (41%), Gaps = 26/158 (16%)
Query: 869 DSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASK 928
D +++++N+ ++++ L GH ++ +A S ++ S G D + +W + K
Sbjct: 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL----AEGKK 595
Query: 929 FLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPK---LECLKQFVPREA--- 982
++ AL F ++ L A E I I++ +E LK + EA
Sbjct: 596 LYSLEANSVIHALC-----FSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKA 650
Query: 983 --SGP---------ITHATYSCDSQSIYVAFEEGSVGV 1009
SGP T +S D +++ + +G + V
Sbjct: 651 DNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV 688
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 20/208 (9%)
Query: 443 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD 502
VV+ D ++VWD TG ++ GH + V + + + + + S A D +K W D
Sbjct: 212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV----QYDGRRVVSGAYDFMVKVW--D 265
Query: 503 NLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKR 562
+ GH++ + + DG + S ++ + W+ G T G
Sbjct: 266 PETETCLHTLQGHTNRVYSLQFDGIHVVSGSL----DTSIRVWDVETGNCIHTLTGHQSL 321
Query: 563 SVGVVQFDTTKNRFLAAGD-EFMIKFWDMDNVNLLASIDADGGLQ-ASPCIRFNKEGILL 620
+ G+ K+ L +G+ + +K WD+ L ++ Q A C++FNK ++
Sbjct: 322 TSGM----ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI- 376
Query: 621 AVSTNDNGIKI--LANADGIRLLRTVES 646
S++D +K+ L + IR L T+ES
Sbjct: 377 -TSSDDGTVKLWDLKTGEFIRNLVTLES 403
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 13/159 (8%)
Query: 443 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD 502
+V+ +D +KVW AVTG GH V+S ++NI I S +TD +K W +
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS--SQMRDNI--IISGSTDRTLKVWNAE 187
Query: 503 NLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKR 562
+ GH+ST+ R+ S G+ ++ L W+ G G
Sbjct: 188 T--GECIHTLYGHTSTVRCMHLHEKRVVS-GSR---DATLRVWDIETGQCLHVLMG-HVA 240
Query: 563 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 601
+V VQ+D R ++ +FM+K WD + L ++
Sbjct: 241 AVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQG 277
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 82/210 (39%), Gaps = 25/210 (11%)
Query: 424 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKEN 483
HV +V Y ++ VV+ D ++KVWD T T + +GH + VYS
Sbjct: 237 GHVAAVR--CVQYDGRR--VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS-------- 284
Query: 484 IQF----IFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE 539
+QF + S + D I+ W D + GH S L S +
Sbjct: 285 LQFDGIHVVSGSLDTSIRVW--DVETGNCIHTLTGHQSLTSGMELKDNILVS----GNAD 338
Query: 540 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN---VNLL 596
S + W+ G +T G K V KN + + D+ +K WD+ + L
Sbjct: 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 398
Query: 597 ASIDADGGLQASPCIRFNKEGILLAVSTND 626
++++ G IR + ++ AV + +
Sbjct: 399 VTLESGGSGGVVWRIRASNTKLVCAVGSRN 428
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 8/122 (6%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGW 922
+ G D+SI++++V L GHQ +G+ + N+LVS ADS + +W
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIK-- 347
Query: 923 EKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREA 982
Q + L PN ++ T +QF+ + + + + + +++ E ++ V E+
Sbjct: 348 TGQCLQTLQGPNKHQSAV---TCLQFNKNFV-ITSSDDGTVKLWDLKTGEFIRNLVTLES 403
Query: 983 SG 984
G
Sbjct: 404 GG 405
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 860 NNIIAIGMEDSSIQIYNVRVDEVKTKLKG---HQKRITGLAFSNTLNVLVSSGADSQLCV 916
+NI+ G DS+++I++++ + L+G HQ +T L F+ N +++S D + +
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKL 386
Query: 917 W 917
W
Sbjct: 387 W 387
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 422 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHK 481
++ H V L F + VV+ D I+VWD TG + GH+S + K
Sbjct: 275 LQGHTNRVYSLQFD----GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM--ELK 328
Query: 482 ENIQFIFSTATDGKIKAW 499
+NI + S D +K W
Sbjct: 329 DNI--LVSGNADSTVKIW 344
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 23/186 (12%)
Query: 424 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI--FEGHESPVYSICPHHK 481
+H ++D Y +L+ TC DR +K++D G + I GHE PV+ + H
Sbjct: 11 SHEDMIHDAQMDYYGTRLA--TCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHP 68
Query: 482 ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYS---ADGARLFSCGTNKEG 538
+ S + D K+ W +N ++ GH S++ + D + +CG++
Sbjct: 69 MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA 128
Query: 539 ESYLVEWNESEGAVKR--TYHGLGKRSV----GVV----------QFDTTKNRFLAAGDE 582
S L E + VK+ H +G +V VV Q RF + G +
Sbjct: 129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCD 188
Query: 583 FMIKFW 588
+IK W
Sbjct: 189 NLIKLW 194
Score = 37.0 bits (84), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 393 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 452
GT S V ++ G ++ ++ H G V +A+++P + +C DR +
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILI-ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83
Query: 453 KVWDAVTGT--KQYIFEGHESPVYSIC--PH 479
+W GT K + GH+S V S+C PH
Sbjct: 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPH 114
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 5/156 (3%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+T +V +S DG + + ++ G++L L+I+AH V AFS +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL---LDIKAHEDEVLCCAFSSDDS 670
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
++ TC D+ +K+WD+ TG + ++ H V +K N + + + D +K W
Sbjct: 671 YIA--TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728
Query: 500 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 535
+ R +S +S D L SC +
Sbjct: 729 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 764
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+ +V + ++ DG + ++ ++ + GD ++ ++AH +V D ++
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD----YVFLQAHQETVKDFRLLQDSR 1057
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
LS D +KVW+ +TG + F H+ V S C + +F ST+ D K W
Sbjct: 1058 LLSW---SFDGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIW 1112
Query: 500 LYDNLGSRVDYDAPGHSSTMM--AYSADGARLFSCGTNKEGESYLVEWNESEGAV 552
+D L ++ GH+ + A+S DG L + N E + WN S+G +
Sbjct: 1113 SFDLLSPL--HELKGHNGCVRCSAFSLDGILLATGDDNGE----IRIWNVSDGQL 1161
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
Query: 806 EDAVPCFALSKNDSYVMSASGGK-ISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNII- 863
ED V C A S +DSY+ + S K + +++ + N+++
Sbjct: 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 716
Query: 864 AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
A G D ++++++ E + + GH + FS +L S AD L +W
Sbjct: 717 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 72/356 (20%), Positives = 130/356 (36%), Gaps = 75/356 (21%)
Query: 320 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSD 379
S ++ DF P L V+ + V LW + SR ++A C L
Sbjct: 841 STIQYCDFSPYDH-LAVIALSQYCVELWNIDSRLKVA----------DCRGHL------- 882
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+ V+ VM+SPDG+ F A + ++ E + + A V ++ +
Sbjct: 883 --SWVHGVMFSPDGSSFLTASDDQTIRVW------ETKKVCKNSAIVLK-QEIDVVFQEN 933
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
+ V+ R +++ TG Y+ E S + PH ++++ DG IK
Sbjct: 934 ETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCC-CLSPH----LEYVAFGDEDGAIKII 988
Query: 500 LYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTN--------KEGESYLVE----- 544
N +RV GH + + ++ADG L S + + G+ ++
Sbjct: 989 ELPN--NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQET 1046
Query: 545 -----------------------WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD 581
WN G ++R + + +V + +F +
Sbjct: 1047 VKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF-TCHQGTVLSCAISSDATKFSSTSA 1105
Query: 582 EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637
+ K W D ++ L + G C F+ +GILLA ++ I+I +DG
Sbjct: 1106 DKTAKIWSFDLLSPLHELKGHNG--CVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1159
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGW 922
+A G ED +I+I + + V + GH+K + + F+ L+SS DS + VW+ W
Sbjct: 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---W 1032
Query: 923 EKQASKFL 930
+ FL
Sbjct: 1033 QTGDYVFL 1040
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 858 QDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
QD IA D ++Q++ E +K H+ + AFS+ + + + AD ++ +W
Sbjct: 625 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 684
Query: 918 ST 919
+
Sbjct: 685 DS 686
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 521 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG 580
+S DG R+ SCG +K + + E E +K + V F + +
Sbjct: 622 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA-----HEDEVLCCAFSSDDSYIATCS 676
Query: 581 DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG-ILLAVSTNDNGIKI 631
+ +K WD L+ + D + Q + C NK +LLA +ND +K+
Sbjct: 677 ADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 5/156 (3%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+T +V +S DG + + ++ G++L L+I+AH V AFS +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL---LDIKAHEDEVLCCAFSSDDS 677
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
++ TC D+ +K+WD+ TG + ++ H V +K N + + + D +K W
Sbjct: 678 YIA--TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 735
Query: 500 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 535
+ R +S +S D L SC +
Sbjct: 736 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 771
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+ +V + ++ DG + ++ ++ + GD ++ ++AH +V D ++
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD----YVFLQAHQETVKDFRLLQDSR 1064
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
LS D +KVW+ +TG + F H+ V S C + +F ST+ D K W
Sbjct: 1065 LLSW---SFDGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIW 1119
Query: 500 LYDNLGSRVDYDAPGHSSTMM--AYSADGARLFSCGTNKEGESYLVEWNESEGAV 552
+D L ++ GH+ + A+S DG L + N E + WN S+G +
Sbjct: 1120 SFDLLSPL--HELKGHNGCVRCSAFSLDGILLATGDDNGE----IRIWNVSDGQL 1168
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
Query: 806 EDAVPCFALSKNDSYVMSASGGK-ISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNII- 863
ED V C A S +DSY+ + S K + +++ + N+++
Sbjct: 664 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 723
Query: 864 AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
A G D ++++++ E + + GH + FS +L S AD L +W
Sbjct: 724 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 72/356 (20%), Positives = 130/356 (36%), Gaps = 75/356 (21%)
Query: 320 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSD 379
S ++ DF P L V+ + V LW + SR ++A C L
Sbjct: 848 STIQYCDFSPYDH-LAVIALSQYCVELWNIDSRLKVA----------DCRGHL------- 889
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+ V+ VM+SPDG+ F A + ++ E + + A V ++ +
Sbjct: 890 --SWVHGVMFSPDGSSFLTASDDQTIRVW------ETKKVCKNSAIVLK-QEIDVVFQEN 940
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
+ V+ R +++ TG Y+ E S + PH ++++ DG IK
Sbjct: 941 ETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCC-CLSPH----LEYVAFGDEDGAIKII 995
Query: 500 LYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTN--------KEGESYLVE----- 544
N +RV GH + + ++ADG L S + + G+ ++
Sbjct: 996 ELPN--NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQET 1053
Query: 545 -----------------------WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD 581
WN G ++R + + +V + +F +
Sbjct: 1054 VKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF-TCHQGTVLSCAISSDATKFSSTSA 1112
Query: 582 EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637
+ K W D ++ L + G C F+ +GILLA ++ I+I +DG
Sbjct: 1113 DKTAKIWSFDLLSPLHELKGHNG--CVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1166
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGW 922
+A G ED +I+I + + V + GH+K + + F+ L+SS DS + VW+ W
Sbjct: 983 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---W 1039
Query: 923 EKQASKFL 930
+ FL
Sbjct: 1040 QTGDYVFL 1047
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 858 QDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
QD IA D ++Q++ E +K H+ + AFS+ + + + AD ++ +W
Sbjct: 632 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 691
Query: 918 ST 919
+
Sbjct: 692 DS 693
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 521 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG 580
+S DG R+ SCG +K + + E E +K + V F + +
Sbjct: 629 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA-----HEDEVLCCAFSSDDSYIATCS 683
Query: 581 DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG-ILLAVSTNDNGIKI 631
+ +K WD L+ + D + Q + C NK +LLA +ND +K+
Sbjct: 684 ADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 734
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 7/157 (4%)
Query: 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439
+T +V +S DG + + ++ G++L LEI+AH V AFS ++
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKL---LEIKAHEDEVLCCAFSTDDR 676
Query: 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST-ATDGKIKA 498
+ TC D+ +K+W+++TG + ++ H V + C + + +T ++D +K
Sbjct: 677 --FIATCSVDKKVKIWNSMTGELVHTYDEHSEQV-NCCHFTNSSHHLLLATGSSDCFLKL 733
Query: 499 WLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 535
W + R +S +S D L SC +
Sbjct: 734 WDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSAD 770
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 449 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV 508
D +KVW+ +TG K+ F H+ V S C + +F ST+ D K W +D L
Sbjct: 1070 DGTVKVWNIITGNKEKDFVCHQGTVLS-CDISHDATKFS-STSADKTAKIWSFDLLLPL- 1126
Query: 509 DYDAPGHSSTMM--AYSADGARLFSCGTNKEGESYLVEWNESEGAV 552
++ GH+ + A+S D L + N E + WN S G +
Sbjct: 1127 -HELRGHNGCVRCSAFSVDSTLLATGDDNGE----IRIWNVSNGEL 1167
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 2/114 (1%)
Query: 806 EDAVPCFALSKNDSYVMSAS-GGKISLFNXXX-XXXXXXXXXXXXXXXXXXXHPQDNNII 863
ED V C A S +D ++ + S K+ ++N + + ++
Sbjct: 663 EDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLL 722
Query: 864 AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
A G D ++++++ E + + GH + FS +L S AD L +W
Sbjct: 723 ATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/114 (18%), Positives = 43/114 (37%)
Query: 806 EDAVPCFALSKNDSYVMSASGGKISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNIIAI 865
E V C + S + + +M A+ KI LF+ N++ +
Sbjct: 804 EVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVV 863
Query: 866 GMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST 919
+ ++++N +GH + G+ FS + ++S D + +W T
Sbjct: 864 ALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWET 917
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGW 922
IA G E+ +I+I + + + H+K + + F+ L+SS D+++ VW+ W
Sbjct: 982 IAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN---W 1038
Query: 923 EKQASKFL 930
+ FL
Sbjct: 1039 QLDKCIFL 1046
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/62 (20%), Positives = 29/62 (46%)
Query: 858 QDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
+D IA D ++Q++ E ++K H+ + AFS + + D ++ +W
Sbjct: 631 EDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW 690
Query: 918 ST 919
++
Sbjct: 691 NS 692
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/330 (19%), Positives = 124/330 (37%), Gaps = 50/330 (15%)
Query: 320 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVW--ELGACSMPLQASLS 377
S V + FHPV +++ + + KVW E G L+
Sbjct: 109 SPVTRVIFHPVFSVMVSASEDA-----------------TIKVWDYETGDFERTLKG--- 148
Query: 378 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP 437
+T SV + + G L + + L+ + G + +R + +V SV+ + P
Sbjct: 149 --HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM----P 202
Query: 438 NKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIK 497
N +V+ D+ IK+W+ TG F GH V + P+ ++ I S + D ++
Sbjct: 203 NGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN--QDGTLIASCSNDQTVR 259
Query: 498 AWLYDNLGSRVDYDAPGHSSTMMAYSADG-----ARLFSCGTNKEG-----------ESY 541
W+ + + H ++++ + + T K G +
Sbjct: 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 542 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 601
+ W+ S G T G GV+ F + L+ D+ ++ WD N + +++A
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVL-FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 378
Query: 602 DGGLQASPCIRFNKEGILLAVSTNDNGIKI 631
S + F+K + + D +K+
Sbjct: 379 HEHFVTS--LDFHKTAPYVVTGSVDQTVKV 406
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 861 NIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTD 920
+++ ED++I++++ + + LKGH + ++F ++ +L S AD + +W
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 921 GWE---------KQASKFLTIPNG-RTASALADTRVQFHLDQT 953
G+E S +PNG SA D ++ QT
Sbjct: 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 223
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 106/254 (41%), Gaps = 52/254 (20%)
Query: 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQ-ASL 376
Q A+ S+DF P + ++ G++ V ++E P + S
Sbjct: 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFE--------------------GPPFKFKST 185
Query: 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG--------DELRNHLEIEAHVGS 428
++T V+ V ++PDG+LF + LY G D L+N AH GS
Sbjct: 186 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN----VAHSGS 241
Query: 429 VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI---- 484
V L +S +++ + D+ IK+W+ T + PV + + I
Sbjct: 242 VFGLTWSPDGTKIA--SASADKTIKIWNVATLKVEKTI-----PVGTRIEDQQLGIIWTK 294
Query: 485 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSS--TMMAYSADGARLFSCGTNKEGESYL 542
Q + S + +G I ++ LGS +D GH+ T ++ SADG LFS + E ++
Sbjct: 295 QALVSISANGFIN-FVNPELGS-IDQVRYGHNKAITALSSSADGKTLFSA----DAEGHI 348
Query: 543 VEWNESEGAVKRTY 556
W+ S G R +
Sbjct: 349 NSWDISTGISNRVF 362
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 858 QDNNIIAIGMEDSSIQIYNV---RVDEVKTKLKGHQKRITGLAFSNTLNVLVSS 908
D +A+G +DS + +Y + V EVKT + H IT +AFSN LV++
Sbjct: 458 NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV--HPAEITSVAFSNNGAFLVAT 509
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 98/238 (41%), Gaps = 43/238 (18%)
Query: 317 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASL 376
N S+VK++ F+ Q +L G N G++ +W++ K E + PL
Sbjct: 111 NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN----------KCTESPSNYTPLTPGQ 160
Query: 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY 436
S +SV+ V+ +A+++ + H++ G + +++A V L+++
Sbjct: 161 S---MSSVDEVI--------SLAWNQSLAHVFASAGSSNFASIWDLKAK-KEVIHLSYTS 208
Query: 437 PN----KQLSVVT--------------CGEDRVIKVWDAVTGTK--QYIFEGHESPVYSI 476
PN +QLSVV D I +WD Q + +GH+ + S+
Sbjct: 209 PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSL 268
Query: 477 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGT 534
H++ + S+ D + W ++ + A G+ ++ + LF+C +
Sbjct: 269 DWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS 325
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
Query: 856 HPQDNNIIAIGM---EDSSIQIYNVRVDE--VKTKLKGHQKRITGLAFSNT-LNVLVSSG 909
HP+++ +A D SI I+++R ++T +GHQK I L + + ++L+SSG
Sbjct: 223 HPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG 282
Query: 910 ADSQLCVWSTDGWEKQASKF 929
D+ + +W+ + E Q S+F
Sbjct: 283 RDNTVLLWNPESAE-QLSQF 301
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 419 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC- 477
H + H V+DLA S N ++ D+ +++WD TGT F GH+S VYS+
Sbjct: 69 HKALTGHNHFVSDLALSQEN--CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF 126
Query: 478 -PHHKENIQFIFSTATDGKIKAW 499
P +++ I S + +IK W
Sbjct: 127 SPDNRQ----ILSAGAEREIKLW 145
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 34/64 (53%)
Query: 858 QDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
Q+N D +++++++R + GHQ + +AFS ++S+GA+ ++ +W
Sbjct: 86 QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
Query: 918 STDG 921
+ G
Sbjct: 146 NILG 149
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 85/215 (39%), Gaps = 18/215 (8%)
Query: 328 HPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 387
HP + + G +L G RI ++W S ++ LS + +V +V
Sbjct: 14 HPDSRCWFLAWNPAG-TLLASCGGDRRI-----RIWGTEGDSWICKSVLSEGHQRTVRKV 67
Query: 388 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG 447
WSP G A ++ D+ +E H V +A++ P+ L + TC
Sbjct: 68 AWSPCGNYLASASFDATTCIWK-KNQDDFECVTTLEGHENEVKSVAWA-PSGNL-LATCS 124
Query: 448 EDRVIKVWDAVTGTKQY----IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 503
D+ + VW+ V +Y + H V + H + + + S + D +K + +
Sbjct: 125 RDKSVWVWE-VDEEDEYECVSVLNSHTQDVKHVVWHPSQ--ELLASASYDDTVKLYREEE 181
Query: 504 LGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNK 536
GH ST+ +A+ G RL SC ++
Sbjct: 182 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR 216
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 358 KSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELR 417
KS VWE+ S+ + +T V V+W P L A V LY D+
Sbjct: 127 KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE-DDWV 185
Query: 418 NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI 465
+E H +V LAF ++L+ +C +DR +++W +QY+
Sbjct: 186 CCATLEGHESTVWSLAFDPSGQRLA--SCSDDRTVRIW------RQYL 225
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 861 NIIAIGMEDSSIQIYNVRVD--EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
N +A D++ I+ D E T L+GH+ + +A++ + N+L + D + VW
Sbjct: 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
Query: 919 TDGWEKQASKFLTIPNGRT 937
D E+ + +++ N T
Sbjct: 134 VD--EEDEYECVSVLNSHT 150
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 857 PQDNNIIAIGMEDSSIQIYNVR-------VDEVKTKLKGHQKRITGLAFSNTL-NVLVSS 908
P ++N+IA G ED ++ ++ + + E L+GH KR+ +A+ T NVL+S+
Sbjct: 91 PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA 150
Query: 909 GADSQLCVW 917
G D+ + VW
Sbjct: 151 GCDNVILVW 159
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 81/187 (43%), Gaps = 21/187 (11%)
Query: 498 AWLYDNLG--SRVDYDAP---GHSSTMM--AYSADGARLFSCGTNKEGESYLVEWNESEG 550
A+L LG RVD + P GH++ ++ A+ + + G+ + ++ W +G
Sbjct: 58 AFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSE---DCTVMVWEIPDG 114
Query: 551 AVKR-------TYHGLGKRSVGVVQFD-TTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 602
+ T G KR VG+V + T +N L+AG + +I WD+ + ++ D
Sbjct: 115 GLVLPLREPVITLEGHTKR-VGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPD 173
Query: 603 GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKA 662
+ ++++G L+ S D ++++ G + + R + +R A V
Sbjct: 174 VHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAE--KDRPHEGTRPVHAVFVSE 231
Query: 663 PAIGTFG 669
I T G
Sbjct: 232 GKILTTG 238
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 420 LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF--EGHESPVYSI 476
+ +E H V +A+ +P Q +++ G D VI VWD TG + H +YS+
Sbjct: 125 ITLEGHTKRVGIVAW-HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 857 PQDNNIIAIGMEDSSIQIYNVR-------VDEVKTKLKGHQKRITGLAFSNTL-NVLVSS 908
P ++N+IA G ED ++ ++ + + E L+GH KR+ +A+ T NVL+S+
Sbjct: 91 PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA 150
Query: 909 GADSQLCVW 917
G D+ + VW
Sbjct: 151 GXDNVILVW 159
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 81/187 (43%), Gaps = 21/187 (11%)
Query: 498 AWLYDNLG--SRVDYDAP---GHSSTMM--AYSADGARLFSCGTNKEGESYLVEWNESEG 550
A+L LG RVD + P GH++ ++ A+ + + G+ + ++ W +G
Sbjct: 58 AFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSE---DCTVMVWEIPDG 114
Query: 551 AVKR-------TYHGLGKRSVGVVQFD-TTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 602
+ T G KR VG+V + T +N L+AG + +I WD+ + ++ D
Sbjct: 115 GLVLPLREPVITLEGHTKR-VGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPD 173
Query: 603 GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKA 662
+ ++++G L+ S D ++++ G + + R + +R A V
Sbjct: 174 VHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAE--KDRPHEGTRPVHAVFVSE 231
Query: 663 PAIGTFG 669
I T G
Sbjct: 232 GKILTTG 238
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 420 LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF--EGHESPVYSI 476
+ +E H V +A+ +P Q +++ G D VI VWD TG + H +YS+
Sbjct: 125 ITLEGHTKRVGIVAW-HPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 443 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD 502
VV+ D I++WD G + EGHE V I +K I S A DGKIK W
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR----IVSGAYDGKIKVW--- 361
Query: 503 NLGSRVDYDAPGHSSTMMAYSADGARLF 530
+L + +D AP + + R+F
Sbjct: 362 DLVAALDPRAPAGTLCLRTLVEHSGRVF 389
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 26/225 (11%)
Query: 443 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD 502
+V+ D IK+WD T + I GH V +C + E + I + ++D ++ W
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERV--IITGSSDSTVRVWDV- 200
Query: 503 NLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE---SEGAVKRTYHGL 559
N G ++ H ++ + + +C ++ + W+ ++ ++R G
Sbjct: 201 NTGEMLN-TLIHHCEAVLHLRFNNGMMVTCSKDRS----IAVWDMASPTDITLRRVLVG- 254
Query: 560 GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGIL 619
+ +V VV FD K A+GD IK W+ + ++ +G + C+++ L
Sbjct: 255 HRAAVNVVDFD-DKYIVSASGDR-TIKVWNTSTCEFVRTL--NGHKRGIACLQYRDR--L 308
Query: 620 LAVSTNDNGIKILANADG--IRLL----RTVESRTFDASRVASAA 658
+ ++DN I++ G +R+L V FD R+ S A
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA 353
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 88/222 (39%), Gaps = 32/222 (14%)
Query: 381 TASVNRVMWSPDGTLFGVAYSKHI---------VHLYTYHGGDELRNHLEIEAHVGSVND 431
T R++ G++ + Y + + V ++ + G+ L + H +V
Sbjct: 162 TLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIH---HCEAVLH 218
Query: 432 LAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK---QYIFEGHESPVYSICPHHKENIQFIF 488
L F+ N + VTC +DR I VWD + T + + GH + V + + ++I
Sbjct: 219 LRFN--NGMM--VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV----DFDDKYIV 270
Query: 489 STATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 548
S + D IK W + + Y RL G++ ++ + W+
Sbjct: 271 SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSS---DNTIRLWDIE 324
Query: 549 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDM 590
GA R G + V ++FD R ++ + IK WD+
Sbjct: 325 CGACLRVLEG-HEELVRCIRFD--NKRIVSGAYDGKIKVWDL 363
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
D +I G DS++++++V E+ L H + + L F+N ++V+ D + VW
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVW 238
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 817 NDSYVMSASGGK-ISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIY 875
+D Y++SASG + I ++N + ++ G D++I+++
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLW 321
Query: 876 NVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
++ L+GH++ + + F N +VS D ++ VW
Sbjct: 322 DIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDGKIKVW 361
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D+ I D +I+++N E L GH++ I L + + L +VS +D+ + +W
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL--VVSGSSDNTIRLWD 322
Query: 919 TD 920
+
Sbjct: 323 IE 324
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 424 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI--FEGHESPVYSICPHHK 481
AH ++D Y K+L+ TC D+ IK+++ T + I GHE PV+ + H
Sbjct: 7 AHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 482 ENIQFIFSTATDGKIKAWLYDN 503
+ + S + DGK+ W +N
Sbjct: 65 KFGTILASCSYDGKVLIWKEEN 86
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 65/168 (38%), Gaps = 39/168 (23%)
Query: 328 HPVQQILLVVGTNMGDVMLW--EVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN 385
HP +L + G V++W E G +IAV + ++ASVN
Sbjct: 63 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV-------------------HSASVN 103
Query: 386 RVMWSPD--GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS-------- 435
V W+P G L VA S V + + + + I+AH VN +++
Sbjct: 104 SVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-TSPIIIDAHAIGVNSASWAPATIEEDG 162
Query: 436 ---YPNKQLSVVTCGEDRVIKVW----DAVTGTKQYIFEGHESPVYSI 476
+ VT G D ++K+W DA T + EGH V +
Sbjct: 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 210
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 424 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI--FEGHESPVYSICPHHK 481
AH ++D Y K+L+ TC D+ IK+++ T + I GHE PV+ + H
Sbjct: 9 AHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP 66
Query: 482 ENIQFIFSTATDGKIKAWLYDN 503
+ + S + DGK+ W +N
Sbjct: 67 KFGTILASCSYDGKVLIWKEEN 88
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 66/168 (39%), Gaps = 39/168 (23%)
Query: 328 HPVQQILLVVGTNMGDVMLW--EVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN 385
HP +L + G V++W E G +IAV + ++ASVN
Sbjct: 65 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV-------------------HSASVN 105
Query: 386 RVMWSPD--GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS-------- 435
V W+P G L VA S V + + + + + I+AH VN +++
Sbjct: 106 SVQWAPHEYGPLLLVASSDGKVSVVEFKE-NGTTSPIIIDAHAIGVNSASWAPATIEEDG 164
Query: 436 ---YPNKQLSVVTCGEDRVIKVW----DAVTGTKQYIFEGHESPVYSI 476
+ VT G D ++K+W DA T + EGH V +
Sbjct: 165 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 212
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 424 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI--FEGHESPVYSICPHHK 481
AH ++D Y K+L+ TC D+ IK+++ T + I GHE PV+ + H
Sbjct: 7 AHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 482 ENIQFIFSTATDGKIKAWLYDN 503
+ + S + DGK+ W +N
Sbjct: 65 KFGTILASCSYDGKVLIWKEEN 86
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 72/183 (39%), Gaps = 39/183 (21%)
Query: 314 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLW--EVGSRERIAVKSFKVWELGACSMP 371
+T ++G + HP +L + G V++W E G +IAV +
Sbjct: 49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV----------- 97
Query: 372 LQASLSSDYTASVNRVMWSPD--GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSV 429
++ASVN V W+P G L VA S V + + + + + I+AH V
Sbjct: 98 --------HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE-NGTTSPIIIDAHAIGV 148
Query: 430 NDLAFS-----------YPNKQLSVVTCGEDRVIKVW----DAVTGTKQYIFEGHESPVY 474
N +++ + VT G D ++K+W DA T + EGH V
Sbjct: 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208
Query: 475 SIC 477
+
Sbjct: 209 DVA 211
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 436 YPNKQLSVVTCGEDRVIKVWDAVTGTKQY-IFEGHESPVYSICPHHKENIQFIFSTATDG 494
+PN+Q V T G+D ++ +WD GT + + HE+ ++ + H N + +F+ + DG
Sbjct: 245 HPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEV-HFHPSNPEHLFTCSEDG 303
Query: 495 KIKAW 499
+ W
Sbjct: 304 SLWHW 308
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 424 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI--FEGHESPVYSICPHHK 481
AH ++D Y K+++ TC D+ IK+++ T + I GHE PV+ + H
Sbjct: 7 AHNEMIHDAVMDYYGKRMA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 482 ENIQFIFSTATDGKIKAWLYDN 503
+ + S + DGK+ W +N
Sbjct: 65 KFGTILASCSYDGKVMIWKEEN 86
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 72/183 (39%), Gaps = 39/183 (21%)
Query: 314 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLW--EVGSRERIAVKSFKVWELGACSMP 371
+T ++G + HP +L + G VM+W E G +IAV +
Sbjct: 49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAV----------- 97
Query: 372 LQASLSSDYTASVNRVMWSPD--GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSV 429
++ASVN V W+P G + VA S V + + + + + I+AH V
Sbjct: 98 --------HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE-NGTTSPIIIDAHAIGV 148
Query: 430 NDLAFS-----------YPNKQLSVVTCGEDRVIKVW----DAVTGTKQYIFEGHESPVY 474
N +++ + VT G D ++K+W DA T + EGH V
Sbjct: 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208
Query: 475 SIC 477
+
Sbjct: 209 DVA 211
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D +A G ED I+I+++ ++ L+GH++ I L + + + LVS D + +W
Sbjct: 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW- 192
Query: 919 TDGWEKQASKFLTIPNGRTASALA 942
D Q S L+I +G T A++
Sbjct: 193 -DLRTGQCSLTLSIEDGVTTVAVS 215
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 26/178 (14%)
Query: 429 VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIF 488
+ + FS K L+ T EDR+I++WD I +GHE +YS+ + + +
Sbjct: 126 IRSVCFSPDGKFLA--TGAEDRLIRIWDIENRKIVMILQGHEQDIYSL--DYFPSGDKLV 181
Query: 489 STATDGKIKAW----------LYDNLGSRVDYDAPGHSSTMMAYSADGA-RLFSCGTNKE 537
S + D ++ W L G +PG + A S D A R++ T
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET--- 238
Query: 538 GESYLVEWNESEGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN 594
+LVE +SE G G K SV V F ++ + +K W++ N N
Sbjct: 239 --GFLVERLDSENE-----SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 27/184 (14%)
Query: 317 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASL 376
N+ VK +DFHP + +L + G V LW + ++ V+S +V E P++A
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTTLYS-GRVELWNYET--QVEVRSIQVTE-----TPVRA-- 60
Query: 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY 436
+ A N ++ V + ++ Y+ G+++ ++ EAH + +A +
Sbjct: 61 -GKFIARKNWII---------VGSDDFRIRVFNYNTGEKV---VDFEAHPDYIRSIAV-H 106
Query: 437 PNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGK 495
P K V++ +D +K+W+ + FEGHE V + + K+ F S D
Sbjct: 107 PTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRT 164
Query: 496 IKAW 499
+K W
Sbjct: 165 VKVW 168
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D + +D +I+I++ + L+GH ++ F TL +++S D L +W+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 919 T 919
+
Sbjct: 257 S 257
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 443 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
++T +D IK+WD T + EGH S V H + I S + DG +K W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPIIISGSEDGTLKIW 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 27/184 (14%)
Query: 317 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASL 376
N+ VK +DFHP + +L + G V LW + ++ V+S +V E P++A
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTTLYS-GRVELWNYET--QVEVRSIQVTE-----TPVRA-- 60
Query: 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY 436
+ A N ++ V + ++ Y+ G+++ ++ EAH + +A +
Sbjct: 61 -GKFIARKNWII---------VGSDDFRIRVFNYNTGEKV---VDFEAHPDYIRSIAV-H 106
Query: 437 PNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGK 495
P K V++ +D +K+W+ + FEGHE V + + K+ F S D
Sbjct: 107 PTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRT 164
Query: 496 IKAW 499
+K W
Sbjct: 165 VKVW 168
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D + +D +I+I++ + L+GH ++ F TL +++S D L +W+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 919 T 919
+
Sbjct: 257 S 257
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 443 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
++T +D IK+WD T + EGH S V H + I S + DG +K W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPIIISGSEDGTLKIW 255
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 32/155 (20%)
Query: 358 KSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLY-------TY 410
K+ KVW+ G+ LQA +S + A V V +S + F A + + L+ T+
Sbjct: 124 KTAKVWKEGSLVYNLQAHNASVWDAKV--VSFSENK--FLTASADKTIKLWQNDKVIKTF 179
Query: 411 HGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 470
G H ++ H+ V+D F ++C D +IK+ D TG +EGHE
Sbjct: 180 SG-----IHNDVVRHLAVVDDGHF---------ISCSNDGLIKLVDXHTGDVLRTYEGHE 225
Query: 471 SPVYSI--CPHHKENIQFIFSTATDGKIKAWLYDN 503
S VY I P+ I S D ++ W +N
Sbjct: 226 SFVYCIKLLPNGD-----IVSCGEDRTVRIWSKEN 255
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 404 IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-K 462
++ L H GD LR + E+ V + L PN +V+CGEDR +++W G+ K
Sbjct: 206 LIKLVDXHTGDVLRTYEGHESFVYCIKLL----PNG--DIVSCGEDRTVRIWSKENGSLK 259
Query: 463 QYI 465
Q I
Sbjct: 260 QVI 262
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 424 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI--FEGHESPVYSICPHHK 481
AH ++D Y K+ + TC D+ IK+++ T + I GHE PV+ + H
Sbjct: 7 AHNEXIHDAVXDYYGKRXA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 482 ENIQFIFSTATDGKIKAWLYDN 503
+ + S + DGK+ W +N
Sbjct: 65 KFGTILASCSYDGKVXIWKEEN 86
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 19/174 (10%)
Query: 426 VGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGTKQYIFEGHESPV--YSICPHHK- 481
VG +D+ +K+ S++ G D+ IKVW + G GH V + P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 482 -ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNKEG 538
++ I S D +KAW + +++ D GH+S + + S DG + S G K+G
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAG--KDG 218
Query: 539 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMD 591
E L WN A K+ + L + V + NR+ LAA IK + +D
Sbjct: 219 EIML--WNL---AAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLD 266
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 449 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
D+ +++WD TG F GH+S V S+ K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 19/174 (10%)
Query: 426 VGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGTKQYIFEGHESPV--YSICPHHK- 481
VG +D+ +K+ S++ G D+ IKVW + G GH V + P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 482 -ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNKEG 538
++ I S D +KAW + +++ D GH+S + + S DG + S G K+G
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAG--KDG 218
Query: 539 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMD 591
E L WN A K+ + L + V + NR+ LAA IK + +D
Sbjct: 219 EIML--WNL---AAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLD 266
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 449 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
D+ +++WD TG F GH+S V S+ K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 19/174 (10%)
Query: 426 VGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGTKQYIFEGHESPV--YSICPHHK- 481
VG +D+ +K+ S++ G D+ IKVW + G GH V + P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 482 -ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNKEG 538
++ I S D +KAW + +++ D GH+S + + S DG + S G K+G
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAG--KDG 218
Query: 539 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMD 591
E L WN A K+ + L + V + NR+ LAA IK + +D
Sbjct: 219 EIML--WNL---AAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLD 266
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 449 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
D+ +++WD TG F GH+S V S+ K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 19/174 (10%)
Query: 426 VGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGTKQYIFEGHESPV--YSICPHHK- 481
VG +D+ +K+ S++ G D+ IKVW + G GH V + P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 482 -ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNKEG 538
++ I S D +KAW + +++ D GH+S + + S DG + S G K+G
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAG--KDG 218
Query: 539 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMD 591
E L WN A K+ + L + V + NR+ LAA IK + +D
Sbjct: 219 EIML--WNL---AAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLD 266
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 449 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
D+ +++WD TG F GH+S V S+ K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 19/174 (10%)
Query: 426 VGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGTKQYIFEGHESPV--YSICPHHK- 481
VG +D+ +K+ S++ G D+ IKVW + G GH V + P+ K
Sbjct: 98 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 156
Query: 482 -ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNKEG 538
++ I S D +KAW + +++ D GH+S + + S DG + S G K+G
Sbjct: 157 DDDSVTIISAGNDKMVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAG--KDG 212
Query: 539 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMD 591
E L WN A K+ + L + V + NR+ LAA IK + +D
Sbjct: 213 EIML--WNL---AAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLD 260
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 449 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
D+ +++WD TG F GH+S V S+ K ++ I S + D IK W
Sbjct: 80 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 128
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 30/194 (15%)
Query: 307 DLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELG 366
D+ KT N+ VK +DFHP + +L G V LW ++ V+S +V E
Sbjct: 4 DIKKTFS---NRSDRVKGIDFHPTEPWVLTT-LYSGRVELWNY--ETQVEVRSIQVTE-- 55
Query: 367 ACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHV 426
P++A + A N ++ V + ++ Y+ G+++ ++ EAH
Sbjct: 56 ---TPVRA---GKFIARKNWII---------VGSDDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 427 GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSICPHHKENIQ 485
+ +A +P K V++ +D +K+W+ + FEGHE V + + K+
Sbjct: 98 DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 486 FIFSTATDGKIKAW 499
F S D +K W
Sbjct: 156 FA-SGCLDRTVKVW 168
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 443 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
++T +D IK+WD T + EGH S V S H + I S + DG +K W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNV-SFAVFHP-TLPIIISGSEDGTLKIW 255
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 868 EDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST 919
+D +I+I++ + L+GH ++ F TL +++S D L +W++
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 30/194 (15%)
Query: 307 DLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELG 366
D+ KT N+ VK +DFHP + +L G V +W + ++ V+S +V E
Sbjct: 4 DIKKTFS---NRSDRVKGIDFHPTEPWVLTT-LYSGRVEIWNYET--QVEVRSIQVTE-- 55
Query: 367 ACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHV 426
P++A + A N ++ V + ++ Y+ G+++ ++ EAH
Sbjct: 56 ---TPVRA---GKFIARKNWII---------VGSDDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 427 GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSICPHHKENIQ 485
+ +A +P K V++ +D +K+W+ + FEGHE V + + K+
Sbjct: 98 DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 486 FIFSTATDGKIKAW 499
F S D +K W
Sbjct: 156 FA-SGCLDRTVKVW 168
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 443 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
++T +D IK+WD T + EGH S V S H + I S + DG +K W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNV-SFAVFHP-TLPIIISGSEDGTLKIW 255
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 868 EDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST 919
+D +I+I++ + L+GH ++ F TL +++S D L +W++
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 19/174 (10%)
Query: 426 VGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGTKQYIFEGHESPV--YSICPHHK- 481
VG +D+ +K+ S + G D+ IKVW + G GH V + P+ K
Sbjct: 104 VGHKSDVXSVDIDKKASXIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 482 -ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNKEG 538
++ I S D +KAW + +++ D GH+S + + S DG + S G K+G
Sbjct: 163 DDDSVTIISAGNDKXVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAG--KDG 218
Query: 539 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMD 591
E L WN A K+ + L + V + NR+ LAA IK + +D
Sbjct: 219 EIXL--WNL---AAKKAXYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLD 266
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 449 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
D+ +++WD TG F GH+S V S+ K + I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX--IISGSRDKTIKVW 134
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 35/231 (15%)
Query: 335 LVVGTNMGDVMLWEVGSRERI---AVKSFKVWELGACSMPL------------------- 372
L VGT+ +V LW+V ++R+ S +V L S L
Sbjct: 173 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 232
Query: 373 QASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLE-IEAHVGSVND 431
+ S ++ V + W+PDG + ++V+++ G+ L+ H G+V
Sbjct: 233 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 292
Query: 432 LAFSYPNKQLSVVTCG--EDRVIKVWDAVTGTKQYIFEGHESPVYSI--CPHHKENIQFI 487
+A+ P + + T G DR I++W+ +G + H S V SI PH+KE I
Sbjct: 293 VAWC-PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELIS-- 348
Query: 488 FSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNK 536
++ W Y + + GH+S +++ S DGA + S ++
Sbjct: 349 GHGFAQNQLVIWKYPTMAKVAELK--GHTSRVLSLTMSPDGATVASAAADE 397
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 862 IIAIGMEDSSIQIYNVRVDEVKTK-LKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
I++ G I ++VRV E L GH + + GL ++ L S G D+ + VW
Sbjct: 212 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 35/231 (15%)
Query: 335 LVVGTNMGDVMLWEVGSRERI---AVKSFKVWELGACSMPL------------------- 372
L VGT+ +V LW+V ++R+ S +V L S L
Sbjct: 162 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 221
Query: 373 QASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLE-IEAHVGSVND 431
+ S ++ V + W+PDG + ++V+++ G+ L+ H G+V
Sbjct: 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 281
Query: 432 LAFSYPNKQLSVVTCG--EDRVIKVWDAVTGTKQYIFEGHESPVYSI--CPHHKENIQFI 487
+A+ P + + T G DR I++W+ +G + H S V SI PH+KE I
Sbjct: 282 VAWC-PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELIS-- 337
Query: 488 FSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNK 536
++ W Y + + GH+S +++ S DGA + S ++
Sbjct: 338 GHGFAQNQLVIWKYPTMAKVAELK--GHTSRVLSLTMSPDGATVASAAADE 386
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 862 IIAIGMEDSSIQIYNVRVDEVKTK-LKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
I++ G I ++VRV E L GH + + GL ++ L S G D+ + VW
Sbjct: 201 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 389 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE 448
W+ D T + + H VH+Y G ++ H E++ H G V + ++ + + +VTCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGIDWAPDSNR--IVTCGT 72
Query: 449 DRVIKVW 455
DR VW
Sbjct: 73 DRNAYVW 79
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 858 QDNNIIAIGMEDSSIQIYN------VRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGAD 911
+D IAI + + IY V+V E LK H ++TG+ ++ N +V+ G D
Sbjct: 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHE----LKEHNGQVTGIDWAPDSNRIVTCGTD 73
Query: 912 SQLCVWSTDG 921
VW+ G
Sbjct: 74 RNAYVWTLKG 83
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 38.1 bits (87), Expect = 0.031, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCI----RFNKEGILLAVSTND 626
N+ A G F+I WDM N++ LL +I ADG + A P + R KE I+ A
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 106
Query: 627 NG 628
+G
Sbjct: 107 SG 108
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 869 DSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG 921
D S++++N++ + + K GH K + +AFS +VS G D+ L VW+ G
Sbjct: 88 DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG 140
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 67/264 (25%)
Query: 421 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI---- 476
+E H V+D+A S N V+ D +++W+ G QY F GH V S+
Sbjct: 62 RLEGHSAFVSDVALS--NNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSP 119
Query: 477 ----------------------CPH------HKENIQ-----------FIFSTATDGKIK 497
C H H + + I S D +K
Sbjct: 120 DNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 498 AWLYDNLGSRVDYDAPGHSS--TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 555
W D R+ D GH++ T + S DG+ S ++K+G + L W+ ++G
Sbjct: 180 VW--DLATGRLVTDLKGHTNYVTSVTVSPDGSLCAS--SDKDGVARL--WDLTKG----- 228
Query: 556 YHGLGKRSVG--VVQFDTTKNRF-LAAGDEFMIKFWDMDNVNLLASI--DADGGLQASP- 609
L + + G + Q + NR+ + A E I+ +D++N +++ + + G + P
Sbjct: 229 -EALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPE 287
Query: 610 C--IRFNKEGILLAVSTNDNGIKI 631
C I ++ +G L DN I++
Sbjct: 288 CVSIAWSADGSTLYSGYTDNVIRV 311
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 9/120 (7%)
Query: 359 SFKVWEL--GACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDEL 416
S ++W L G C +T V V +SPD + + ++ G E
Sbjct: 90 SLRLWNLQNGQCQYKFLG-----HTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG--EC 142
Query: 417 RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 476
+ L AH V+ + FS +V+ G D ++KVWD TG +GH + V S+
Sbjct: 143 MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSV 202
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 85/198 (42%), Gaps = 17/198 (8%)
Query: 813 ALSKNDSYVMSASGG-KISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNIIAIGMEDSS 871
ALS N ++ +SAS + L+N P DN I G D++
Sbjct: 74 ALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSP-DNRQIVSGGRDNA 132
Query: 872 IQIYNVRVDEVKTKLKG-HQKRITGLAFSNTLN--VLVSSGADSQLCVWSTDGWEKQASK 928
++++NV+ + + T +G H ++ + FS +L+ V+VS G D+ + V W+ +
Sbjct: 133 LRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV-----WDLATGR 187
Query: 929 FLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIA-IYEAPKLECLKQFVPREASGPIT 987
+T G T T V D + + + +A +++ K E L + A PI
Sbjct: 188 LVTDLKGHTNYV---TSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMA---AGAPIN 241
Query: 988 HATYSCDSQSIYVAFEEG 1005
+S + + A E+G
Sbjct: 242 QICFSPNRYWMCAATEKG 259
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 68/169 (40%), Gaps = 32/169 (18%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D +I G D+ ++++++ + T LKGH +T + S D LC S
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVS----------PDGSLCA-S 213
Query: 919 TDGWEKQASKFLTIPNGRTASALAD----TRVQFHLDQTHLLAVHETQIAIYE------- 967
+D + ++ + G S +A ++ F ++ + A E I I++
Sbjct: 214 SD--KDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDII 271
Query: 968 ---APKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAS 1013
AP+ + K+ VP S +S D ++Y + + + V S
Sbjct: 272 VELAPEHQGSKKIVPECVS-----IAWSADGSTLYSGYTDNVIRVWGVS 315
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 19/121 (15%)
Query: 424 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKEN 483
H G ++ L F+ NK L ++ +D +++W G Q F GH + S +
Sbjct: 245 GHHGPISVLEFNDTNKLL--LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK 302
Query: 484 IQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYS-ADGARLFSCGTNKEGESYL 542
+ S + DG ++ W +T++A S DG +F+ +++G+ Y
Sbjct: 303 ---VISCSMDGSVRLWSL-------------KQNTLLALSIVDGVPIFAGRISQDGQKYA 346
Query: 543 V 543
V
Sbjct: 347 V 347
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 118/327 (36%), Gaps = 44/327 (13%)
Query: 705 KIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHK 764
+I + E + WKLT I E +L T +V+ L +++ G +I+ N +
Sbjct: 74 RIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELR 133
Query: 765 LWKWPRNERNSTGKATT----NQAPQL---WQPPSGILMTNDISDTNPEDAVPCFALSKN 817
LW N TG ++AP + W +++ D+ + V + ++
Sbjct: 134 LW-------NKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH 186
Query: 818 DSYVMSASGGKISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNV 877
+ + +GG S N D++ I +I +Y +
Sbjct: 187 --FELKETGG--SSINAENHSGDGSLGVDVEWV--------DDDKFVIPGPKGAIFVYQI 234
Query: 878 RVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT 937
KL GH I+ L F++T +L+S+ D L +W Q + + +
Sbjct: 235 TEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVS 294
Query: 938 ASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREAS----GPITHATYSC 993
AS + D +V ++ + +L LKQ S PI S
Sbjct: 295 ASWVGDDKV--------------ISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ 340
Query: 994 DSQSIYVAFEEGSVGVLTASTLRLRCR 1020
D Q VAF +G V V L + R
Sbjct: 341 DGQKYAVAFMDGQVNVYDLKKLNSKSR 367
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 389 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE 448
W+ D T + + H VH+Y G ++ H E++ H G V + ++ + + +VTCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNR--IVTCGT 72
Query: 449 DRVIKVW 455
DR VW
Sbjct: 73 DRNAYVW 79
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 858 QDNNIIAIGMEDSSIQIYN------VRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGAD 911
+D IAI + + IY V+V E LK H ++TG+ ++ N +V+ G D
Sbjct: 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHE----LKEHNGQVTGVDWAPDSNRIVTCGTD 73
Query: 912 SQLCVWSTDG 921
VW+ G
Sbjct: 74 RNAYVWTLKG 83
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 28/194 (14%)
Query: 350 GSRERIAVKSFKVWE-LGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLY 408
GSR+ K+ K+W LG C +Q S++ + V S + + + K +V ++
Sbjct: 123 GSRD----KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK-LVKVW 177
Query: 409 TYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 468
NH+ H G +N + S P+ L + G+D +WD G Y +G
Sbjct: 178 NLANCKLKTNHI---GHTGYLNTVTVS-PDGSL-CASGGKDGQAMLWDLNEGKHLYTLDG 232
Query: 469 HESPVYSIC--PHHKENIQFIFSTATDGKIKAW------LYDNLGSRV---DYDAPGHSS 517
+ + ++C P+ ++ AT IK W + D L V A
Sbjct: 233 GD-IINALCFSPN-----RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQC 286
Query: 518 TMMAYSADGARLFS 531
T +A+SADG LF+
Sbjct: 287 TSLAWSADGQTLFA 300
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 17/179 (9%)
Query: 449 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG-SR 507
D +++WD TGT F GH V S+ +N Q I S + D IK W + LG +
Sbjct: 84 DGTLRLWDLTTGTTTRRFVGHTKDVLSV-AFSSDNRQ-IVSGSRDKTIKLW--NTLGVCK 139
Query: 508 VDYDAPGHSS--TMMAYSADGAR--LFSCGTNKEGESYLVE-WNESEGAVKRTYHGLGKR 562
HS + + +S + + + SCG +K LV+ WN + +K + G
Sbjct: 140 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK-----LVKVWNLANCKLKTNHIG-HTG 193
Query: 563 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 621
+ V + + G + WD++ L ++D G + + C N+ + A
Sbjct: 194 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAA 251
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 16/157 (10%)
Query: 860 NNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST 919
N II D ++++N+ ++KT GH + + S ++ S G D Q +W
Sbjct: 162 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 221
Query: 920 DGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPK---LECLKQ 976
+ + T+ G +AL F ++ L A I I++ ++ LKQ
Sbjct: 222 N----EGKHLYTLDGGDIINALC-----FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQ 272
Query: 977 FVPREASGP----ITHATYSCDSQSIYVAFEEGSVGV 1009
V +S T +S D Q+++ + + V V
Sbjct: 273 EVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 309
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 30/63 (47%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D G D +++++++ + GH K + +AFS+ +VS D + +W+
Sbjct: 74 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
Query: 919 TDG 921
T G
Sbjct: 134 TLG 136
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 79/213 (37%), Gaps = 36/213 (16%)
Query: 296 QSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRER- 354
Q L QS T D + + S+ +HP + VG+ GD+MLW G +++
Sbjct: 96 QGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP 155
Query: 355 --------------IAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD------GT 394
+ + A SM L D+ ++ RV S D +
Sbjct: 156 TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL-QDFKGNILRVFASSDTINIWFCS 214
Query: 395 LFGVAYSKHIVH-------LYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG 447
L A S+ +V + G EL N + H V +A + P + T
Sbjct: 215 LDVSASSRMVVTGDNVGNVILLNMDGKELWN---LRMHKKKVTHVALN-PCCDWFLATAS 270
Query: 448 EDRVIKVWD--AVTGTKQYIFE-GHESPVYSIC 477
D+ +K+WD V G +++ H PV + C
Sbjct: 271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC 303
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 28/194 (14%)
Query: 350 GSRERIAVKSFKVWE-LGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLY 408
GSR+ K+ K+W LG C +Q S++ + V S + + + K +V ++
Sbjct: 146 GSRD----KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK-LVKVW 200
Query: 409 TYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 468
NH+ H G +N + S P+ L + G+D +WD G Y +G
Sbjct: 201 NLANCKLKTNHI---GHTGYLNTVTVS-PDGSL-CASGGKDGQAMLWDLNEGKHLYTLDG 255
Query: 469 HESPVYSIC--PHHKENIQFIFSTATDGKIKAW------LYDNLGSRV---DYDAPGHSS 517
+ + ++C P+ ++ AT IK W + D L V A
Sbjct: 256 GD-IINALCFSPN-----RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQC 309
Query: 518 TMMAYSADGARLFS 531
T +A+SADG LF+
Sbjct: 310 TSLAWSADGQTLFA 323
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 17/179 (9%)
Query: 449 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG-SR 507
D +++WD TGT F GH V S+ +N Q I S + D IK W + LG +
Sbjct: 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSV-AFSSDNRQ-IVSGSRDKTIKLW--NTLGVCK 162
Query: 508 VDYDAPGHSS--TMMAYSADGAR--LFSCGTNKEGESYLVE-WNESEGAVKRTYHGLGKR 562
HS + + +S + + + SCG +K LV+ WN + +K + G
Sbjct: 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK-----LVKVWNLANCKLKTNHIG-HTG 216
Query: 563 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 621
+ V + + G + WD++ L ++D G + + C N+ + A
Sbjct: 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAA 274
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 16/157 (10%)
Query: 860 NNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST 919
N II D ++++N+ ++KT GH + + S ++ S G D Q +W
Sbjct: 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244
Query: 920 DGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPK---LECLKQ 976
+ + T+ G +AL F ++ L A I I++ ++ LKQ
Sbjct: 245 N----EGKHLYTLDGGDIINALC-----FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQ 295
Query: 977 FVPREASGP----ITHATYSCDSQSIYVAFEEGSVGV 1009
V +S T +S D Q+++ + + V V
Sbjct: 296 EVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 332
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 30/63 (47%)
Query: 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918
D G D +++++++ + GH K + +AFS+ +VS D + +W+
Sbjct: 97 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156
Query: 919 TDG 921
T G
Sbjct: 157 TLG 159
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 79/213 (37%), Gaps = 36/213 (16%)
Query: 296 QSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRER- 354
Q L QS T D + + S+ +HP + VG+ GD+MLW G +++
Sbjct: 96 QGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP 155
Query: 355 --------------IAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD------GT 394
+ + A SM L D+ ++ RV S D +
Sbjct: 156 TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL-QDFKGNILRVFASSDTINIWFCS 214
Query: 395 LFGVAYSKHIVH-------LYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG 447
L A S+ +V + G EL N + H V +A + P + T
Sbjct: 215 LDVSASSRMVVTGDNVGNVILLNMDGKELWN---LRMHKKKVTHVALN-PCCDWFLATAS 270
Query: 448 EDRVIKVWD--AVTGTKQYIFE-GHESPVYSIC 477
D+ +K+WD V G +++ H PV + C
Sbjct: 271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC 303
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 36.6 bits (83), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 79/213 (37%), Gaps = 36/213 (16%)
Query: 296 QSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRER- 354
Q L QS T D + + S+ +HP + VG+ GD+MLW G +++
Sbjct: 97 QGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP 156
Query: 355 --------------IAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD------GT 394
+ + A SM L D+ ++ RV S D +
Sbjct: 157 TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL-QDFKGNILRVFASSDTINIWFCS 215
Query: 395 LFGVAYSKHIVH-------LYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG 447
L A S+ +V + G EL N + H V +A + P + T
Sbjct: 216 LDVSASSRMVVTGDNVGNVILLNMDGKELWN---LRMHKKKVTHVALN-PCCDWFLATAS 271
Query: 448 EDRVIKVWD--AVTGTKQYIFE-GHESPVYSIC 477
D+ +K+WD V G +++ H PV + C
Sbjct: 272 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC 304
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 36.6 bits (83), Expect = 0.084, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCI----RFNKEGILLAVSTND 626
N+ A G F+I WDM N++ LL +I ADG + A P + + KE I+ A
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAKAKKENIIAAAQAGA 106
Query: 627 NG 628
+G
Sbjct: 107 SG 108
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 36.2 bits (82), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 105/279 (37%), Gaps = 50/279 (17%)
Query: 358 KSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELR 417
++ VW A S + A +D + V V WS DG+ V +V +Y +LR
Sbjct: 113 RNVYVWN--ADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR 170
Query: 418 NHLEIEAHVGSV------------------NDL------------------AFSYPNKQL 441
+A VG + +D+ ++ + L
Sbjct: 171 TMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL 230
Query: 442 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI--CPHHKENIQFIFSTATDGKIKAW 499
+ + G D V+++WDA + ++ H + V ++ CP + N+ D +I W
Sbjct: 231 QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP-WQSNLLATGGGTMDKQIHFW 289
Query: 500 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 559
G+RV+ G T + +S + S T+ ++ L W+ S + +
Sbjct: 290 -NAATGARVNTVDAGSQVTSLIWSPHSKEIMS--THGFPDNNLSIWSYSSSGLTKQVDIP 346
Query: 560 GKRSVGVVQFDTTKNRFL--AAGDEFMIKFW---DMDNV 593
+ + + R L AA DE +KFW D D+V
Sbjct: 347 AHDTRVLYSALSPDGRILSTAASDE-NLKFWRVYDGDHV 384
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCI----RFNKEGILLAVSTND 626
N+ A G F+I WDM N++ LL +I ADG + A P + + KE I+ A
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGA 106
Query: 627 NG 628
+G
Sbjct: 107 SG 108
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCI----RFNKEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + R KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 102
Query: 627 NG 628
+G
Sbjct: 103 SG 104
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFW---DMDNVNLLASIDADGGLQASPCI----RFNKEGILLAVSTND 626
N+ A G F+I W +MD + LL +I ADG + A P + R KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 102
Query: 627 NG 628
+G
Sbjct: 103 SG 104
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 35.8 bits (81), Expect = 0.14, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I WDM N++ LL +I ADG + A P + KE I+ A
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGA 106
Query: 627 NG 628
+G
Sbjct: 107 SG 108
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 76/210 (36%), Gaps = 57/210 (27%)
Query: 425 HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 484
H G V L+ + P+ +L V+ D K+WD G + F GHES + +IC N
Sbjct: 194 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 250
Query: 485 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 544
F+T +D L+D R D + +M YS D CG
Sbjct: 251 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDN---IICG----------- 283
Query: 545 WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD---MDNVNLLASIDA 601
+ V F + LA D+F WD D +LA D
Sbjct: 284 -------------------ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD- 323
Query: 602 DGGLQASPCIRFNKEGILLAVSTNDNGIKI 631
C+ +G+ +A + D+ +KI
Sbjct: 324 ----NRVSCLGVTDDGMAVATGSWDSFLKI 349
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 76/210 (36%), Gaps = 57/210 (27%)
Query: 425 HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 484
H G V L+ + P+ +L V+ D K+WD G + F GHES + +IC N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 485 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 544
F+T +D L+D R D + +M YS D CG
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDN---IICG----------- 272
Query: 545 WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD---MDNVNLLASIDA 601
+ V F + LA D+F WD D +LA D
Sbjct: 273 -------------------ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD- 312
Query: 602 DGGLQASPCIRFNKEGILLAVSTNDNGIKI 631
C+ +G+ +A + D+ +KI
Sbjct: 313 ----NRVSCLGVTDDGMAVATGSWDSFLKI 338
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 35/231 (15%)
Query: 335 LVVGTNMGDVMLWEVGSRERI---AVKSFKVWELGACSMPL------------------- 372
L VGT+ +V LW+V ++R+ S +V L S L
Sbjct: 82 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 141
Query: 373 QASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLE-IEAHVGSVND 431
+ S ++ V + W+PDG + ++V+++ G+ L+ H G+V
Sbjct: 142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 201
Query: 432 LAFSYPNKQLSVVTCG--EDRVIKVWDAVTGTKQYIFEGHESPVYSIC--PHHKENIQFI 487
+A+ P + + T G DR I++W+ +G + H S V SI PH+KE I
Sbjct: 202 VAWC-PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELIS-- 257
Query: 488 FSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNK 536
++ W Y + + GH+S +++ S DGA + S ++
Sbjct: 258 GHGFAQNQLVIWKYPTMAKVAELK--GHTSRVLSLTMSPDGATVASAAADE 306
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 862 IIAIGMEDSSIQIYNVRVDEVKTK-LKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
I++ G I ++VRV E L GH + + GL ++ L S G D+ + VW
Sbjct: 121 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 76/210 (36%), Gaps = 57/210 (27%)
Query: 425 HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 484
H G V L+ + P+ +L V+ D K+WD G + F GHES + +IC N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 485 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 544
F+T +D L+D R D + +M YS D CG
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDN---IICG----------- 272
Query: 545 WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD---MDNVNLLASIDA 601
+ V F + LA D+F WD D +LA D
Sbjct: 273 -------------------ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD- 312
Query: 602 DGGLQASPCIRFNKEGILLAVSTNDNGIKI 631
C+ +G+ +A + D+ +KI
Sbjct: 313 ----NRVSCLGVTDDGMAVATGSWDSFLKI 338
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 76/210 (36%), Gaps = 57/210 (27%)
Query: 425 HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 484
H G V L+ + P+ +L V+ D K+WD G + F GHES + +IC N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 485 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 544
F+T +D L+D R D + +M YS D CG
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDN---IICG----------- 272
Query: 545 WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD---MDNVNLLASIDA 601
+ V F + LA D+F WD D +LA D
Sbjct: 273 -------------------ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD- 312
Query: 602 DGGLQASPCIRFNKEGILLAVSTNDNGIKI 631
C+ +G+ +A + D+ +KI
Sbjct: 313 ----NRVSCLGVTDDGMAVATGSWDSFLKI 338
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 76/210 (36%), Gaps = 57/210 (27%)
Query: 425 HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 484
H G V L+ + P+ +L V+ D K+WD G + F GHES + +IC N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 485 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 544
F+T +D L+D R D + +M YS D CG
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDN---IICG----------- 272
Query: 545 WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD---MDNVNLLASIDA 601
+ V F + LA D+F WD D +LA D
Sbjct: 273 -------------------ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD- 312
Query: 602 DGGLQASPCIRFNKEGILLAVSTNDNGIKI 631
C+ +G+ +A + D+ +KI
Sbjct: 313 ----NRVSCLGVTDDGMAVATGSWDSFLKI 338
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 23/225 (10%)
Query: 283 NLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGS---AVKSMDFHPVQQILLVVGT 339
+ S IL T + + S DD T++ L++ + A++S+ + P LL G+
Sbjct: 21 DFSQGILATGSTDRKIKLVSVKYDDF--TLIDVLDETAHKKAIRSVAWRP-HTSLLAAGS 77
Query: 340 NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 399
V +W ++E A ++F+ M L A + + V V WS DG
Sbjct: 78 FDSTVSIW---AKEESADRTFE--------MDLLAIIEG-HENEVKGVAWSNDGYYLATC 125
Query: 400 YSKHIVHLY-TYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 458
V ++ T G+E ++ H V + + +P++ L + + D +++W
Sbjct: 126 SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW-HPSEAL-LASSSYDDTVRIWKDY 183
Query: 459 TGTKQ--YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 501
+ + GHE V+S E + + S + D ++ W Y
Sbjct: 184 DDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 861 NIIAIGMEDSSIQIYNVRVDEVKT-------KLKGHQKRITGLAFSNTLNVLVSSGADSQ 913
+++A G DS++ I+ +T ++GH+ + G+A+SN L + D
Sbjct: 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS 130
Query: 914 LCVWSTD 920
+ +W TD
Sbjct: 131 VWIWETD 137
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 862 IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG 921
II++ + D ++ Y + DEV + GH K IT L T+N L+S D ++ WS+
Sbjct: 312 IISLSL-DGTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRIMEWSSSS 366
Query: 922 WEKQASKFL 930
+ S +
Sbjct: 367 MHQDHSNLI 375
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 859 DNNIIAIGMEDSSIQIYNV-RVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
+ +++A G D++I IY+V R ++ L H+ + L + T + LVSSGAD+ + W
Sbjct: 552 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW-ETPSTLVSSGADACIKRW 610
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 34.7 bits (78), Expect = 0.30, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRF----NKEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGA 102
Query: 627 NG 628
+G
Sbjct: 103 SG 104
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 34.7 bits (78), Expect = 0.30, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 44 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 103
Query: 627 NG 628
+G
Sbjct: 104 SG 105
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 34.7 bits (78), Expect = 0.31, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 102
Query: 627 NG 628
+G
Sbjct: 103 SG 104
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 34.7 bits (78), Expect = 0.32, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRF----NKEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGA 102
Query: 627 NG 628
+G
Sbjct: 103 SG 104
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 34.3 bits (77), Expect = 0.40, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISAWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 102
Query: 627 NG 628
+G
Sbjct: 103 SG 104
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 34.3 bits (77), Expect = 0.42, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPC----IRFNKEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTVEAKKENIIAAAQAGA 103
Query: 627 NG 628
+G
Sbjct: 104 SG 105
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 33.9 bits (76), Expect = 0.52, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTMEAKKENIIAAAQAGA 103
Query: 627 NG 628
+G
Sbjct: 104 SG 105
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST 919
+A+GME S++++ +V + K +L H+ + L F+ VS+G D+ L W T
Sbjct: 239 LAVGMESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 33.9 bits (76), Expect = 0.53, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRF----NKEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGA 102
Query: 627 NG 628
+G
Sbjct: 103 SG 104
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 33.9 bits (76), Expect = 0.54, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 102
Query: 627 NG 628
+G
Sbjct: 103 SG 104
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 33.9 bits (76), Expect = 0.54, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 103
Query: 627 NG 628
+G
Sbjct: 104 SG 105
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 102
Query: 627 NG 628
+G
Sbjct: 103 SG 104
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTTEAKKENIIAAAQAGA 103
Query: 627 NG 628
+G
Sbjct: 104 SG 105
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 42 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 101
Query: 627 NG 628
+G
Sbjct: 102 SG 103
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 33.9 bits (76), Expect = 0.56, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 102
Query: 627 NG 628
+G
Sbjct: 103 SG 104
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 33.9 bits (76), Expect = 0.56, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTSEAKKENIIAAAQAGA 103
Query: 627 NG 628
+G
Sbjct: 104 SG 105
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 33.9 bits (76), Expect = 0.56, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFW---DMDNVNLLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W +MD + LL +I ADG + A P + KE I+ A
Sbjct: 44 NKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 103
Query: 627 NG 628
+G
Sbjct: 104 SG 105
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 33.9 bits (76), Expect = 0.56, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 45 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 104
Query: 627 NG 628
+G
Sbjct: 105 SG 106
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 33.9 bits (76), Expect = 0.56, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 45 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 104
Query: 627 NG 628
+G
Sbjct: 105 SG 106
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 33.9 bits (76), Expect = 0.57, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 103
Query: 627 NG 628
+G
Sbjct: 104 SG 105
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 33.9 bits (76), Expect = 0.57, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 103
Query: 627 NG 628
+G
Sbjct: 104 SG 105
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 33.9 bits (76), Expect = 0.57, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRF----NKEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGA 102
Query: 627 NG 628
+G
Sbjct: 103 SG 104
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 33.9 bits (76), Expect = 0.57, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFW---DMDNVNLLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W +MD + LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGA 102
Query: 627 NG 628
+G
Sbjct: 103 SG 104
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 33.9 bits (76), Expect = 0.58, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 103
Query: 627 NG 628
+G
Sbjct: 104 SG 105
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 33.5 bits (75), Expect = 0.59, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFW---DMDNVNLLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W +MD + LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGA 102
Query: 627 NG 628
+G
Sbjct: 103 SG 104
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 33.5 bits (75), Expect = 0.59, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFW---DMDNVNLLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W +MD + LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWKMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGA 102
Query: 627 NG 628
+G
Sbjct: 103 SG 104
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 33.5 bits (75), Expect = 0.60, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 102
Query: 627 NG 628
+G
Sbjct: 103 SG 104
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 33.5 bits (75), Expect = 0.61, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 102
Query: 627 NG 628
+G
Sbjct: 103 SG 104
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 10/121 (8%)
Query: 358 KSFKVWEL--GACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE 415
K VW++ G C + + + VN V + P G F LY E
Sbjct: 220 KKAMVWDMRSGQCVQAFET-----HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE 274
Query: 416 LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 475
+ + + E+ + + + FS + L D I VWD + G++ I GHE+ V +
Sbjct: 275 VAIYSK-ESIIFGASSVDFSLSGRLLFAGY--NDYTINVWDVLKGSRVSILFGHENRVST 331
Query: 476 I 476
+
Sbjct: 332 L 332
Score = 29.6 bits (65), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 25/67 (37%)
Query: 433 AFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT 492
A S+ N + ++T D +WD +G F GH + V + E S
Sbjct: 159 ACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218
Query: 493 DGKIKAW 499
D K W
Sbjct: 219 DKKAMVW 225
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 33.5 bits (75), Expect = 0.68, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 40 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 99
Query: 627 NG 628
+G
Sbjct: 100 SG 101
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 33.5 bits (75), Expect = 0.70, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 102
Query: 627 NG 628
+G
Sbjct: 103 SG 104
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 33.5 bits (75), Expect = 0.73, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCI----RFNKEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 40 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGA 99
Query: 627 NG 628
+G
Sbjct: 100 SG 101
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 33.5 bits (75), Expect = 0.75, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK 630
N+ A G F+I W+M N++ LL +I ADG + A P +++ + IK
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPV-------LMVTAEADAENIK 96
Query: 631 ILANA 635
LA A
Sbjct: 97 ALAQA 101
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 885 KLKGHQKRITGLAFSNTLN-VLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALAD 943
+L+GHQK GL+++ LN L+S+ D +C+W + K+ + + N T
Sbjct: 178 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE-HRVIDAKNIFTGHTAVV 236
Query: 944 TRVQFHL 950
V +HL
Sbjct: 237 EDVAWHL 243
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 857 PQDNNIIAIGMEDSSIQIYNVRVDEVKTK-LKGHQKRITGLAFS-NTLNVLVSSGADSQL 914
P I+A G D ++ ++++R ++K + H+ I + +S + +L SSG D +L
Sbjct: 289 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 348
Query: 915 CVW---------STDGWEKQASKFLTIPNGRTA 938
VW ST+ E + L I G TA
Sbjct: 349 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 381
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/148 (18%), Positives = 62/148 (41%), Gaps = 31/148 (20%)
Query: 320 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSD 379
+ V + F+P + +L G+ A K+ +W+L + L + S
Sbjct: 280 AEVNCLSFNPYSEFILATGS----------------ADKTVALWDLRNLKLKLHSFES-- 321
Query: 380 YTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE-----------AHVG 427
+ + +V WSP + T+ + + +H++ E ++ + E H
Sbjct: 322 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 381
Query: 428 SVNDLAFSYPNKQLSVVTCGEDRVIKVW 455
++D +++ PN+ + + ED +++VW
Sbjct: 382 KISDFSWN-PNEPWIICSVSEDNIMQVW 408
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 885 KLKGHQKRITGLAFSNTLN-VLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALAD 943
+L+GHQK GL+++ LN L+S+ D +C+W + K+ + + N T
Sbjct: 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE-HRVIDAKNIFTGHTAVV 234
Query: 944 TRVQFHL 950
V +HL
Sbjct: 235 EDVAWHL 241
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 857 PQDNNIIAIGMEDSSIQIYNVRVDEVKTK-LKGHQKRITGLAFS-NTLNVLVSSGADSQL 914
P I+A G D ++ ++++R ++K + H+ I + +S + +L SSG D +L
Sbjct: 287 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 346
Query: 915 CVW---------STDGWEKQASKFLTIPNGRTA 938
VW ST+ E + L I G TA
Sbjct: 347 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 379
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/148 (18%), Positives = 62/148 (41%), Gaps = 31/148 (20%)
Query: 320 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSD 379
+ V + F+P + +L G+ A K+ +W+L + L + S
Sbjct: 278 AEVNCLSFNPYSEFILATGS----------------ADKTVALWDLRNLKLKLHSFES-- 319
Query: 380 YTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE-----------AHVG 427
+ + +V WSP + T+ + + +H++ E ++ + E H
Sbjct: 320 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 379
Query: 428 SVNDLAFSYPNKQLSVVTCGEDRVIKVW 455
++D +++ PN+ + + ED +++VW
Sbjct: 380 KISDFSWN-PNEPWIICSVSEDNIMQVW 406
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 885 KLKGHQKRITGLAFSNTLN-VLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALAD 943
+L+GHQK GL+++ LN L+S+ D +C+W + K+ + + N T
Sbjct: 180 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE-HRVIDAKNIFTGHTAVV 238
Query: 944 TRVQFHL 950
V +HL
Sbjct: 239 EDVAWHL 245
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 857 PQDNNIIAIGMEDSSIQIYNVRVDEVKTK-LKGHQKRITGLAFS-NTLNVLVSSGADSQL 914
P I+A G D ++ ++++R ++K + H+ I + +S + +L SSG D +L
Sbjct: 291 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 350
Query: 915 CVW---------STDGWEKQASKFLTIPNGRTA 938
VW ST+ E + L I G TA
Sbjct: 351 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 383
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/148 (18%), Positives = 62/148 (41%), Gaps = 31/148 (20%)
Query: 320 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSD 379
+ V + F+P + +L G+ A K+ +W+L + L + S
Sbjct: 282 AEVNCLSFNPYSEFILATGS----------------ADKTVALWDLRNLKLKLHSFES-- 323
Query: 380 YTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE-----------AHVG 427
+ + +V WSP + T+ + + +H++ E ++ + E H
Sbjct: 324 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 383
Query: 428 SVNDLAFSYPNKQLSVVTCGEDRVIKVW 455
++D +++ PN+ + + ED +++VW
Sbjct: 384 KISDFSWN-PNEPWIICSVSEDNIMQVW 410
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 33.1 bits (74), Expect = 0.86, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I ADG + A P + KE ++ A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGA 102
Query: 627 NG 628
+G
Sbjct: 103 SG 104
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 87/242 (35%), Gaps = 61/242 (25%)
Query: 307 DLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAV--------- 357
++P + V+T ++G A S + P Q+ L+ G+ +LW+V + +RI++
Sbjct: 146 NMPVSRVLTGHKGYA-SSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGH 204
Query: 358 -----------------------KSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT 394
+ ++W+L S ++ + +N V + PDG
Sbjct: 205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT--YHGHEGDINSVKFFPDGQ 262
Query: 395 LFGVAYSKHIVHLYTYHGGDEL--------RNHLEIEAHVGSVNDLAFSYPNKQLSVVTC 446
FG L+ G +L RN E+ V +AFS + L
Sbjct: 263 RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI----VTSVAFSISGRLLFAGYS 318
Query: 447 GEDRVIKVWDAV-------TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499
D VWD + GT Q EG S C + + + + D +K W
Sbjct: 319 NGD--CYVWDTLLAEMVLNLGTLQNSHEGRIS-----CLGLSSDGSALCTGSWDKNLKIW 371
Query: 500 LY 501
+
Sbjct: 372 AF 373
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 19/131 (14%)
Query: 326 DFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN 385
D V + ++V ++ G V LWE+ +E + V F +E L S+ SD T +V+
Sbjct: 99 DVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTL--SVFSDGTQAVS 156
Query: 386 RVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVT 445
G +S V ++ L+++ AH VN +A + P K ++
Sbjct: 157 G----------GKDFS---VKVWDLSQKAVLKSY---NAHSSEVNCVA-ACPGKDTIFLS 199
Query: 446 CGEDRVIKVWD 456
CGED I +WD
Sbjct: 200 CGEDGRILLWD 210
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 856 HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS 899
HP+ ++ A G E ++ + N++ + H + ITGLA+S
Sbjct: 235 HPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYS 278
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 444 VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI--CPHHKENIQFIFSTATDGKIKAW-- 499
V+ G+D +KVWD + H S V + CP K+ I S DG+I W
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP-GKDTI--FLSCGEDGRILLWDT 211
Query: 500 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG 533
+R+D+ A T + + + F+CG
Sbjct: 212 RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 857 PQDNNIIAIGMEDSSIQIYNVRVDEVK----------TKLKGHQKRITGLAFSNTLN-VL 905
PQ+ +IIA S + +++ K +L+GHQK GL++++ L+ L
Sbjct: 136 PQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHL 195
Query: 906 VSSGADSQLCVW 917
+S+ D +C+W
Sbjct: 196 LSASDDHTVCLW 207
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 857 PQDNNIIAIGMEDSSIQIYNVRVDEVKTK-LKGHQKRITGLAFS-NTLNVLVSSGADSQL 914
P I+A G D ++ ++++R ++K + H+ I + +S + +L SSG D +L
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 915 CVW--STDGWEKQAS-------KFLTIPNGRTA 938
VW S G E+ A + L I G TA
Sbjct: 345 NVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 377
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 857 PQDNNIIAIGMEDSSIQIYNVRVDEVK----------TKLKGHQKRITGLAFSNTLN-VL 905
PQ+ +IIA S + +++ K +L+GHQK GL++++ L+ L
Sbjct: 136 PQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHL 195
Query: 906 VSSGADSQLCVW 917
+S+ D +C+W
Sbjct: 196 LSASDDHTVCLW 207
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 857 PQDNNIIAIGMEDSSIQIYNVRVDEVKTK-LKGHQKRITGLAFS-NTLNVLVSSGADSQL 914
P I+A G D ++ ++++R ++K + H+ I + +S + +L SSG D +L
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 915 CVW--STDGWEKQAS-------KFLTIPNGRTA 938
VW S G E+ A + L I G TA
Sbjct: 345 NVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 377
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 423 EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE 482
+AHV + L F +P+ + ++++ +D +K+W G+ GH + V I +
Sbjct: 133 QAHVSEITKLKF-FPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG 190
Query: 483 NIQFIFSTATDGKIKAW 499
+ + S + DG I+ W
Sbjct: 191 --RNVLSASLDGTIRLW 205
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 423 EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE 482
+AHV + L F +P+ + ++++ +D +K+W G+ GH + V I +
Sbjct: 136 QAHVSEITKLKF-FPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG 193
Query: 483 NIQFIFSTATDGKIKAW 499
+ + S + DG I+ W
Sbjct: 194 --RNVLSASLDGTIRLW 208
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 870 SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
S+I +Y V E T LKGH K + F + L S D + W
Sbjct: 314 STIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 52/110 (47%), Gaps = 17/110 (15%)
Query: 862 IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLN-VLVSSGADSQLCVWSTD 920
++A+G +Q+ +++ L+GH++ I +++S + +L ++ ADS++ +W
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV- 216
Query: 921 GWEKQASKFLTI---PNGRTASALADTR---------VQFHLDQTHLLAV 958
++AS L NG+ + A+ + F D HLL V
Sbjct: 217 ---RRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 862 IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
II++ + D ++ Y + DEV + GH K IT L T+N L+S D ++ W
Sbjct: 312 IISLSL-DGTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRIXEW 362
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 859 DNNIIAIGMEDSSIQIYNV-RVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917
+ +++A G D++I IY+V R ++ L H+ + L + T + LVSSGAD+ + W
Sbjct: 552 EEDLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLW-ETPSTLVSSGADACIKRW 610
>pdb|1WTJ|A Chain A, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Pvar.Tomato
pdb|1WTJ|B Chain B, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Pvar.Tomato
pdb|2CWF|A Chain A, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Complexed With Nadph
pdb|2CWF|B Chain B, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Complexed With Nadph
pdb|2CWH|A Chain A, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Complexed With Nadph
And Pyrrole-2-Carboxylate
pdb|2CWH|B Chain B, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Complexed With Nadph
And Pyrrole-2-Carboxylate
Length = 343
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 166 TCGQPNGARAPSPVTNPLMGAVPKAGAFP 194
TC P+GAR P TNP+ P+AG P
Sbjct: 152 TCVVPHGARQPLFGTNPIAFGAPRAGGEP 180
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 856 HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS-NTLNVLVSSGADSQL 914
HPQ + + G E+ ++ + + + H + +TGL FS +++ L S D L
Sbjct: 223 HPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSL 282
Query: 915 CV 916
V
Sbjct: 283 AV 284
>pdb|1JHL|A Chain A, Three-Dimensional Structure Of A Heteroclitic Antigen-
Antibody Cross-Reaction Complex
Length = 129
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 368 CSMPLQASLSSDYTASVN---RVMWSPDGTLFGVAYSKH 403
C +P A LSSD TASVN +++ DG VA+ KH
Sbjct: 76 CHIPCSALLSSDITASVNCAKKIVSDGDGMNAWVAWRKH 114
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I AD + A P + KE I+ A
Sbjct: 44 NKLQAGGFGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGA 103
Query: 627 NG 628
+G
Sbjct: 104 SG 105
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 626
N+ A G F+I W+M N++ LL +I AD + A P + KE I+ A
Sbjct: 43 NKLQAGGFGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGA 102
Query: 627 NG 628
+G
Sbjct: 103 SG 104
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 857 PQDNNIIAIGMEDSSIQIYNVRVDEVKTK-LKGHQKRITGLAFS-NTLNVLVSSGADSQL 914
P I+A G D ++ ++++R ++K + H+ I + +S + +L SSG D +L
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 342
Query: 915 CVW 917
VW
Sbjct: 343 NVW 345
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 16/107 (14%)
Query: 857 PQDNNIIAIGMEDSSIQIYNVRVDEVK----------TKLKGHQKRITGLAFSNTLN-VL 905
PQ+ IIA S + +++ K +L+GHQK GL+++ L+ L
Sbjct: 134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193
Query: 906 VSSGADSQLCVWSTDGWEKQAS--KFLTIPNGRTASALADTRVQFHL 950
+S+ D +C+W K+ TI G TA V +HL
Sbjct: 194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVV---EDVSWHL 237
>pdb|3SOG|A Chain A, Crystal Structure Of The Bar Domain Of Human Amphiphysin,
Isoform 1
Length = 205
Score = 30.4 bits (67), Expect = 5.8, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 4 FEDMVTNGEWDEVEKYLSGFTKVDDN--RYSMKIFFEIRKQKYLEALDKRDR------AK 55
F + +G ++ YL F + + + S K+ + +LEAL R +K
Sbjct: 78 FHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISK 137
Query: 56 AVEILVKDLKVFSAFNEDLFKEITQL 81
A E K KVF FN DL +E+ L
Sbjct: 138 AEEEFQKAQKVFEEFNVDLQEELPSL 163
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 856 HPQDNNIIAIGMEDSSIQIYNVRVDEVKT---KLKGHQKRITGLAFSNTLNVLVSSGADS 912
HP+D N++ +D +++++N++ D + ++GH+ + + ++S G D
Sbjct: 160 HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH 219
Query: 913 QLCVW 917
L +W
Sbjct: 220 SLKLW 224
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 322 VKSMDFHPVQQILLVVGTNMGDVMLWE 348
V S+++HP + VG+ GD++LW+
Sbjct: 75 VTSLEWHPTHPTTVAVGSKGGDIILWD 101
>pdb|1VJT|A Chain A, Crystal Structure Of Alpha-Glucosidase (Tm0752) From
Thermotoga Maritima At 2.50 A Resolution
Length = 483
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 28 DNRYSMKIFFE----IRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLL- 82
D + +KIF+ +R + LEA RDR EIL++D + S +++I Q+L
Sbjct: 411 DLTHRIKIFYLWPRILRXEWNLEAYISRDRKVLEEILIRDPRTKS------YEQIVQVLD 464
Query: 83 TLENFRDNEQLSKYGDTK 100
+ N NE+L +Y K
Sbjct: 465 EIFNLPFNEELRRYYKEK 482
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 322 VKSMDFHPVQQILLVVGTNMGDVMLWE 348
V S+++HP + VG+ GD++LW+
Sbjct: 76 VTSLEWHPTHPTTVAVGSKGGDIILWD 102
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 856 HPQDNNIIAIGMEDSSIQIYNVRVDEVKT---KLKGHQKRITGLAFSNTLNVLVSSGADS 912
HP+D N++ +D +++++N++ D + ++GH+ + + ++S G D
Sbjct: 119 HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH 178
Query: 913 QLCVW 917
L +W
Sbjct: 179 SLKLW 183
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 856 HPQDNNIIAIGMEDSSIQIYNVRVDEVKT---KLKGHQKRITGLAFSNTLNVLVSSGADS 912
HP+D N++ +D +++++N++ D + ++GH+ + + ++S G D
Sbjct: 123 HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH 182
Query: 913 QLCVW 917
L +W
Sbjct: 183 SLKLW 187
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 856 HPQDNNIIAIGMEDSSIQIYNVRVDEVKT---KLKGHQKRITGLAFSNTLNVLVSSGADS 912
HP+D N++ +D +++++N++ D + ++GH+ + + ++S G D
Sbjct: 123 HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH 182
Query: 913 QLCVW 917
L +W
Sbjct: 183 SLKLW 187
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 856 HPQDNNIIAIGMEDSSIQIYNVRVDEVKT---KLKGHQKRITGLAFSNTLNVLVSSGADS 912
HP+D N++ +D +++++N++ D + ++GH+ + + ++S G D
Sbjct: 124 HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH 183
Query: 913 QLCVW 917
L +W
Sbjct: 184 SLKLW 188
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 426 VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQ 485
+ +VN +AF + L+ V G D WD TK E + P+ + C +H NI
Sbjct: 273 IYAVNGIAFHPVHGTLATV--GSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNI- 329
Query: 486 FIFSTATD 493
F ++++ D
Sbjct: 330 FAYASSYD 337
>pdb|1GHL|A Chain A, The Three-Dimensional Structure Of Pheasant And
Guinea-Fowl Egg Lysozymes
pdb|1GHL|B Chain B, The Three-Dimensional Structure Of Pheasant And
Guinea-Fowl Egg Lysozymes
Length = 130
Score = 29.6 bits (65), Expect = 9.3, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 368 CSMPLQASLSSDYTASVN---RVMWSPDGTLFGVAYSKH 403
C +P A LSSD TASVN +++ +G VA+ KH
Sbjct: 77 CHIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRKH 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,603,865
Number of Sequences: 62578
Number of extensions: 1354887
Number of successful extensions: 3693
Number of sequences better than 100.0: 143
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 3031
Number of HSP's gapped (non-prelim): 555
length of query: 1097
length of database: 14,973,337
effective HSP length: 109
effective length of query: 988
effective length of database: 8,152,335
effective search space: 8054506980
effective search space used: 8054506980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)