Query 001336
Match_columns 1097
No_of_seqs 883 out of 4373
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 22:09:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001336.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001336hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 1.2E-66 2.6E-71 519.0 29.8 456 2-636 54-514 (519)
2 KOG0319 WD40-repeat-containing 100.0 3.3E-57 7.1E-62 485.0 47.7 576 325-1014 25-620 (775)
3 KOG0291 WD40-repeat-containing 100.0 1.3E-51 2.7E-56 441.7 66.3 551 313-1066 49-710 (893)
4 KOG0319 WD40-repeat-containing 100.0 7.9E-54 1.7E-58 459.0 45.9 576 291-970 25-620 (775)
5 KOG0318 WD40 repeat stress pro 100.0 4E-50 8.7E-55 413.7 63.6 568 324-1065 23-602 (603)
6 KOG0275 Conserved WD40 repeat- 100.0 3.1E-54 6.8E-59 416.3 25.6 454 1-633 44-507 (508)
7 KOG0318 WD40 repeat stress pro 100.0 2.7E-48 5.9E-53 400.2 62.5 553 296-1013 37-602 (603)
8 KOG0291 WD40-repeat-containing 100.0 1E-48 2.2E-53 419.5 58.2 580 287-1018 57-714 (893)
9 KOG0306 WD40-repeat-containing 100.0 1.3E-48 2.8E-53 418.4 50.5 572 330-1066 33-665 (888)
10 KOG0306 WD40-repeat-containing 100.0 1.1E-48 2.4E-53 419.0 48.8 527 297-1015 42-666 (888)
11 KOG0271 Notchless-like WD40 re 100.0 4.5E-50 9.8E-55 396.9 29.7 330 312-767 107-479 (480)
12 KOG0271 Notchless-like WD40 re 100.0 1.2E-49 2.7E-54 393.8 29.7 367 377-918 111-479 (480)
13 KOG1408 WD40 repeat protein [F 100.0 8.3E-44 1.8E-48 377.9 41.9 604 324-1066 42-714 (1080)
14 KOG1539 WD repeat protein [Gen 100.0 1.6E-38 3.5E-43 345.6 56.6 585 325-1064 39-647 (910)
15 KOG1408 WD40 repeat protein [F 100.0 1.3E-39 2.7E-44 346.2 43.1 551 318-1014 77-714 (1080)
16 KOG0272 U4/U6 small nuclear ri 100.0 9.4E-42 2E-46 343.3 22.8 284 316-633 172-458 (459)
17 KOG1063 RNA polymerase II elon 100.0 1.1E-37 2.4E-42 332.4 48.9 631 300-1065 36-763 (764)
18 KOG0272 U4/U6 small nuclear ri 100.0 7E-40 1.5E-44 329.8 24.4 286 378-767 172-458 (459)
19 KOG0286 G-protein beta subunit 100.0 2E-37 4.3E-42 297.5 34.2 292 312-633 47-343 (343)
20 KOG0279 G protein beta subunit 100.0 2.6E-37 5.7E-42 295.0 33.2 297 312-635 7-313 (315)
21 KOG1539 WD repeat protein [Gen 100.0 7.1E-36 1.5E-40 325.2 47.5 563 318-969 75-648 (910)
22 KOG0276 Vesicle coat complex C 100.0 4.8E-36 1E-40 315.4 44.5 475 318-969 12-490 (794)
23 KOG0292 Vesicle coat complex C 100.0 1.6E-35 3.5E-40 322.8 48.1 499 318-1011 8-516 (1202)
24 KOG0286 G-protein beta subunit 100.0 1.3E-36 2.8E-41 291.8 33.7 287 376-767 50-343 (343)
25 KOG0276 Vesicle coat complex C 100.0 1.6E-35 3.4E-40 311.6 44.9 459 377-1005 9-483 (794)
26 KOG2106 Uncharacterized conser 100.0 8.4E-34 1.8E-38 291.5 52.1 540 323-1064 69-625 (626)
27 KOG0279 G protein beta subunit 100.0 6.1E-36 1.3E-40 285.7 32.2 297 736-1066 12-314 (315)
28 KOG1063 RNA polymerase II elon 100.0 7.7E-35 1.7E-39 310.8 44.2 572 325-1065 20-699 (764)
29 KOG2106 Uncharacterized conser 100.0 9E-34 2E-38 291.2 46.4 487 276-919 102-625 (626)
30 KOG0315 G-protein beta subunit 100.0 1.5E-35 3.2E-40 277.8 30.1 287 330-650 8-302 (311)
31 KOG0273 Beta-transducin family 100.0 2E-35 4.4E-40 301.6 32.6 315 308-644 167-490 (524)
32 KOG0296 Angio-associated migra 100.0 3.5E-34 7.5E-39 283.8 35.7 339 421-920 59-398 (399)
33 KOG0315 G-protein beta subunit 100.0 1.9E-34 4E-39 270.4 31.2 295 485-899 11-309 (311)
34 KOG0263 Transcription initiati 100.0 8.2E-35 1.8E-39 317.5 32.9 276 305-593 363-651 (707)
35 KOG0295 WD40 repeat-containing 100.0 2.6E-35 5.6E-40 291.4 26.2 292 310-634 99-405 (406)
36 KOG0273 Beta-transducin family 100.0 2E-34 4.3E-39 294.3 32.4 319 273-635 173-523 (524)
37 KOG0285 Pleiotropic regulator 100.0 1.2E-34 2.6E-39 285.1 25.9 293 310-636 141-440 (460)
38 KOG0296 Angio-associated migra 100.0 5.5E-33 1.2E-37 275.3 34.4 329 377-878 60-398 (399)
39 KOG0265 U5 snRNP-specific prot 100.0 2E-33 4.3E-38 271.3 27.6 286 315-632 43-335 (338)
40 KOG0292 Vesicle coat complex C 100.0 9.5E-32 2.1E-36 293.5 43.9 476 377-1022 5-488 (1202)
41 KOG0645 WD40 repeat protein [G 100.0 2.3E-32 5E-37 260.1 33.4 291 312-635 6-311 (312)
42 KOG0284 Polyadenylation factor 100.0 1E-34 2.2E-39 291.2 18.1 284 318-635 95-380 (464)
43 KOG2048 WD40 repeat protein [G 100.0 1.1E-29 2.4E-34 271.6 57.6 547 380-1066 24-602 (691)
44 KOG0265 U5 snRNP-specific prot 100.0 1.1E-32 2.3E-37 266.2 30.7 251 376-637 42-298 (338)
45 KOG0266 WD40 repeat-containing 100.0 2.4E-32 5.2E-37 311.6 33.8 286 318-635 158-454 (456)
46 KOG0645 WD40 repeat protein [G 100.0 8.1E-32 1.8E-36 256.4 30.9 293 736-1065 11-311 (312)
47 KOG0263 Transcription initiati 100.0 2.1E-33 4.6E-38 306.4 22.9 276 738-1070 377-654 (707)
48 KOG0285 Pleiotropic regulator 100.0 1.4E-32 3E-37 270.7 26.1 246 376-637 146-391 (460)
49 KOG0293 WD40 repeat-containing 100.0 1.5E-32 3.2E-37 275.5 24.8 259 376-646 219-480 (519)
50 KOG0295 WD40 repeat-containing 100.0 2.2E-32 4.7E-37 270.8 25.1 253 377-644 104-372 (406)
51 KOG1445 Tumor-specific antigen 100.0 5.6E-31 1.2E-35 276.9 36.7 666 312-1035 71-866 (1012)
52 KOG0282 mRNA splicing factor [ 100.0 4.6E-33 9.9E-38 285.9 18.5 294 308-633 202-503 (503)
53 KOG0281 Beta-TrCP (transducin 100.0 5.3E-33 1.2E-37 272.1 17.0 282 310-637 184-479 (499)
54 KOG0266 WD40 repeat-containing 100.0 4.4E-31 9.6E-36 301.2 33.8 288 738-1065 158-454 (456)
55 KOG0316 Conserved WD40 repeat- 100.0 3.5E-31 7.6E-36 246.3 26.4 289 309-634 6-298 (307)
56 KOG0284 Polyadenylation factor 100.0 2E-32 4.4E-37 274.7 18.7 284 380-769 95-380 (464)
57 KOG2048 WD40 repeat protein [G 100.0 4.6E-28 9.9E-33 259.3 52.4 511 424-1075 23-559 (691)
58 cd00200 WD40 WD40 domain, foun 100.0 9.6E-30 2.1E-34 278.2 36.9 283 317-633 7-289 (289)
59 KOG0281 Beta-TrCP (transducin 100.0 2.1E-31 4.5E-36 261.0 16.3 232 380-637 196-430 (499)
60 KOG0282 mRNA splicing factor [ 100.0 5.6E-31 1.2E-35 270.6 18.7 285 736-1063 211-503 (503)
61 KOG0316 Conserved WD40 repeat- 100.0 1.2E-29 2.7E-34 236.0 25.5 246 376-637 12-259 (307)
62 cd00200 WD40 WD40 domain, foun 100.0 1.9E-28 4.1E-33 267.9 38.3 247 377-637 5-251 (289)
63 PLN00181 protein SPA1-RELATED; 100.0 2E-28 4.4E-33 302.1 41.4 291 318-634 482-792 (793)
64 KOG0278 Serine/threonine kinas 100.0 2.7E-30 5.8E-35 242.4 18.2 285 315-637 10-299 (334)
65 KOG0275 Conserved WD40 repeat- 100.0 3.2E-30 6.9E-35 250.2 17.4 293 737-1064 211-508 (508)
66 PLN00181 protein SPA1-RELATED; 100.0 2.9E-28 6.4E-33 300.7 39.2 320 711-1064 457-792 (793)
67 KOG0278 Serine/threonine kinas 100.0 5.9E-30 1.3E-34 240.1 16.6 298 734-1079 9-313 (334)
68 KOG1445 Tumor-specific antigen 100.0 9.4E-28 2E-32 252.7 34.4 668 376-1078 74-857 (1012)
69 KOG0313 Microtubule binding pr 100.0 1.8E-28 4E-33 244.4 26.0 291 308-635 94-418 (423)
70 KOG0288 WD40 repeat protein Ti 100.0 1.3E-29 2.8E-34 255.1 17.1 293 307-632 162-458 (459)
71 KOG0641 WD40 repeat protein [G 100.0 3.9E-27 8.3E-32 217.5 31.8 310 310-635 23-349 (350)
72 KOG0640 mRNA cleavage stimulat 100.0 6.3E-28 1.4E-32 233.4 27.1 308 314-634 107-425 (430)
73 KOG0973 Histone transcription 100.0 3.2E-28 6.9E-33 275.6 28.7 306 318-637 12-357 (942)
74 KOG0643 Translation initiation 100.0 5.2E-28 1.1E-32 229.8 24.2 287 315-637 6-319 (327)
75 KOG0310 Conserved WD40 repeat- 100.0 5.7E-28 1.2E-32 249.2 26.3 283 318-634 25-308 (487)
76 KOG0643 Translation initiation 100.0 3.1E-27 6.6E-32 224.5 28.3 235 376-626 5-252 (327)
77 KOG1407 WD40 repeat protein [F 100.0 4.7E-27 1E-31 222.6 29.0 274 318-626 19-293 (313)
78 KOG0283 WD40 repeat-containing 100.0 7.2E-27 1.6E-31 258.2 30.6 250 378-637 264-578 (712)
79 KOG0647 mRNA export protein (c 100.0 6.8E-27 1.5E-31 226.4 26.6 274 318-624 26-312 (347)
80 PTZ00421 coronin; Provisional 100.0 3.7E-26 8E-31 258.6 37.0 289 318-617 19-315 (493)
81 KOG0313 Microtubule binding pr 100.0 4.6E-27 1E-31 234.4 25.8 309 378-878 102-418 (423)
82 KOG0277 Peroxisomal targeting 100.0 3.8E-27 8.2E-32 222.3 22.0 284 323-634 12-308 (311)
83 KOG0973 Histone transcription 100.0 5.6E-27 1.2E-31 265.5 27.7 304 738-1068 12-358 (942)
84 KOG1407 WD40 repeat protein [F 100.0 1.8E-26 3.9E-31 218.7 26.0 248 377-637 16-263 (313)
85 KOG0283 WD40 repeat-containing 100.0 6.7E-27 1.5E-31 258.4 26.7 274 737-1016 265-579 (712)
86 KOG1446 Histone H3 (Lys4) meth 100.0 2.2E-25 4.8E-30 218.7 34.2 282 318-635 13-303 (311)
87 KOG0274 Cdc4 and related F-box 100.0 2.2E-26 4.7E-31 260.0 31.0 277 318-637 207-484 (537)
88 KOG0310 Conserved WD40 repeat- 99.9 3.5E-26 7.7E-31 236.1 25.9 283 738-1065 25-309 (487)
89 KOG1446 Histone H3 (Lys4) meth 99.9 5.4E-25 1.2E-29 216.0 32.6 289 738-1068 13-306 (311)
90 KOG0640 mRNA cleavage stimulat 99.9 2.4E-26 5.3E-31 222.5 22.4 293 376-767 107-424 (430)
91 KOG2096 WD40 repeat protein [G 99.9 1.8E-25 3.8E-30 217.5 26.8 304 603-1011 84-400 (420)
92 KOG0308 Conserved WD40 repeat- 99.9 1.6E-26 3.4E-31 245.8 21.3 248 380-637 20-287 (735)
93 KOG0305 Anaphase promoting com 99.9 1.2E-25 2.6E-30 243.0 28.4 278 323-637 181-463 (484)
94 PTZ00421 coronin; Provisional 99.9 5.9E-25 1.3E-29 248.8 34.9 264 738-1022 19-299 (493)
95 PTZ00420 coronin; Provisional 99.9 1.1E-24 2.4E-29 246.9 36.7 256 338-617 50-318 (568)
96 KOG0305 Anaphase promoting com 99.9 1.6E-25 3.4E-30 242.1 27.2 263 299-593 198-463 (484)
97 KOG0772 Uncharacterized conser 99.9 1.2E-25 2.6E-30 232.3 24.9 310 736-1078 164-504 (641)
98 KOG0299 U3 snoRNP-associated p 99.9 1.9E-25 4.1E-30 228.8 26.1 295 317-633 140-454 (479)
99 KOG0641 WD40 repeat protein [G 99.9 2.1E-24 4.6E-29 199.5 30.1 302 738-1065 31-349 (350)
100 KOG0288 WD40 repeat protein Ti 99.9 2.7E-26 5.9E-31 231.4 18.9 253 377-644 171-425 (459)
101 KOG0647 mRNA export protein (c 99.9 3E-25 6.4E-30 215.1 24.8 250 377-637 23-283 (347)
102 KOG0268 Sof1-like rRNA process 99.9 1.7E-26 3.7E-31 228.7 16.4 286 421-838 61-348 (433)
103 KOG0289 mRNA splicing factor [ 99.9 5.6E-25 1.2E-29 223.0 27.5 241 737-1012 259-505 (506)
104 KOG0299 U3 snoRNP-associated p 99.9 3.7E-25 7.9E-30 226.7 25.7 254 377-641 138-416 (479)
105 KOG0294 WD40 repeat-containing 99.9 9.5E-25 2E-29 212.8 27.2 241 804-1068 41-284 (362)
106 KOG1963 WD40 repeat protein [G 99.9 2.7E-23 5.9E-28 230.5 42.3 556 385-1068 20-653 (792)
107 KOG0277 Peroxisomal targeting 99.9 2.5E-25 5.4E-30 210.1 22.3 252 311-590 52-308 (311)
108 KOG0300 WD40 repeat-containing 99.9 1.8E-25 3.8E-30 216.9 21.8 333 551-1015 139-478 (481)
109 KOG0772 Uncharacterized conser 99.9 3.7E-25 8.1E-30 228.8 24.8 302 309-634 156-486 (641)
110 KOG0274 Cdc4 and related F-box 99.9 1.1E-24 2.3E-29 246.4 30.4 279 738-1071 207-488 (537)
111 KOG0294 WD40 repeat-containing 99.9 1.5E-24 3.2E-29 211.5 26.8 243 377-637 39-283 (362)
112 KOG0289 mRNA splicing factor [ 99.9 1.9E-24 4.2E-29 219.2 27.8 283 319-634 219-505 (506)
113 KOG2096 WD40 repeat protein [G 99.9 1.4E-24 3E-29 211.3 25.7 311 373-834 78-401 (420)
114 KOG0268 Sof1-like rRNA process 99.9 8.7E-26 1.9E-30 223.7 15.8 283 317-637 64-347 (433)
115 KOG0300 WD40 repeat-containing 99.9 7E-25 1.5E-29 212.8 21.4 296 310-637 138-478 (481)
116 KOG0301 Phospholipase A2-activ 99.9 2.4E-24 5.2E-29 231.2 27.4 283 311-637 5-290 (745)
117 KOG0308 Conserved WD40 repeat- 99.9 7.4E-25 1.6E-29 233.2 22.7 287 324-635 29-327 (735)
118 KOG1963 WD40 repeat protein [G 99.9 2.5E-22 5.3E-27 223.0 41.9 517 422-1071 12-589 (792)
119 KOG1036 Mitotic spindle checkp 99.9 1.4E-23 3E-28 204.9 27.5 271 318-625 12-294 (323)
120 KOG1332 Vesicle coat complex C 99.9 8.4E-25 1.8E-29 205.4 18.3 254 376-636 6-287 (299)
121 KOG0301 Phospholipase A2-activ 99.9 6.6E-24 1.4E-28 227.9 25.3 275 736-1066 11-289 (745)
122 KOG0639 Transducin-like enhanc 99.9 3E-24 6.5E-29 220.9 21.2 293 311-634 411-703 (705)
123 PTZ00420 coronin; Provisional 99.9 7.8E-23 1.7E-27 231.9 34.1 228 399-637 50-295 (568)
124 KOG1274 WD40 repeat protein [G 99.9 1.7E-20 3.8E-25 208.4 50.4 278 317-632 11-297 (933)
125 KOG0264 Nucleosome remodeling 99.9 9.8E-24 2.1E-28 216.8 21.8 268 311-636 116-405 (422)
126 KOG1273 WD40 repeat protein [G 99.9 6.5E-23 1.4E-27 199.6 24.9 297 308-636 13-323 (405)
127 KOG1274 WD40 repeat protein [G 99.9 1.6E-22 3.5E-27 224.3 29.4 285 737-1062 11-297 (933)
128 KOG1036 Mitotic spindle checkp 99.9 3.4E-22 7.3E-27 195.2 27.3 243 378-637 10-264 (323)
129 KOG0639 Transducin-like enhanc 99.9 5.6E-23 1.2E-27 211.6 21.7 282 738-1064 418-703 (705)
130 KOG0646 WD40 repeat protein [G 99.9 1.2E-22 2.7E-27 208.8 23.7 225 380-616 80-330 (476)
131 KOG4283 Transcription-coupled 99.9 5.6E-22 1.2E-26 191.2 26.0 302 317-634 41-364 (397)
132 KOG1332 Vesicle coat complex C 99.9 1.1E-22 2.4E-27 191.3 18.2 251 318-591 10-286 (299)
133 KOG2055 WD40 repeat protein [G 99.9 7E-22 1.5E-26 202.5 24.8 289 318-635 212-512 (514)
134 KOG0646 WD40 repeat protein [G 99.9 1E-21 2.3E-26 202.0 24.2 301 445-857 12-329 (476)
135 KOG2055 WD40 repeat protein [G 99.9 2.4E-21 5.2E-26 198.6 26.1 249 738-1013 256-512 (514)
136 KOG4328 WD40 protein [Function 99.9 2.3E-21 5E-26 198.7 24.9 294 318-635 185-495 (498)
137 KOG1538 Uncharacterized conser 99.9 1.7E-20 3.6E-25 199.6 32.2 274 320-636 13-294 (1081)
138 KOG4283 Transcription-coupled 99.9 3.8E-21 8.3E-26 185.5 24.6 246 736-1012 98-364 (397)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.1E-19 2.4E-24 200.2 40.2 292 442-900 3-300 (300)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.7E-20 1.2E-24 202.6 36.9 276 334-645 3-288 (300)
141 KOG1273 WD40 repeat protein [G 99.9 3E-21 6.5E-26 188.1 23.1 253 384-648 26-292 (405)
142 KOG0650 WD40 repeat nucleolar 99.9 4.5E-21 9.7E-26 202.4 25.6 244 375-633 394-678 (733)
143 KOG0321 WD40 repeat-containing 99.9 2.7E-21 5.8E-26 205.8 23.2 291 750-1068 63-394 (720)
144 KOG0264 Nucleosome remodeling 99.9 2.8E-21 6.1E-26 198.9 21.8 255 276-548 122-404 (422)
145 KOG1538 Uncharacterized conser 99.9 1.7E-19 3.7E-24 192.0 33.2 276 515-921 13-294 (1081)
146 KOG0267 Microtubule severing p 99.9 2E-22 4.3E-27 217.3 10.4 237 377-627 24-260 (825)
147 KOG1009 Chromatin assembly com 99.9 4.1E-20 8.8E-25 187.0 25.7 303 318-637 12-374 (434)
148 KOG0321 WD40 repeat-containing 99.9 1.5E-20 3.3E-25 200.2 23.3 285 329-637 61-393 (720)
149 KOG0270 WD40 repeat-containing 99.9 2.8E-20 6.1E-25 190.3 23.3 241 392-638 191-452 (463)
150 KOG0269 WD40 repeat-containing 99.9 2.4E-21 5.1E-26 210.9 15.7 245 321-593 89-342 (839)
151 KOG0650 WD40 repeat nucleolar 99.9 3.7E-20 8.1E-25 195.5 24.0 280 551-918 391-678 (733)
152 KOG2445 Nuclear pore complex c 99.9 1.4E-19 3.1E-24 176.3 25.8 255 377-635 9-318 (361)
153 KOG0269 WD40 repeat-containing 99.9 1.2E-20 2.6E-25 205.4 20.1 298 318-637 38-342 (839)
154 KOG0307 Vesicle coat complex C 99.9 3.9E-21 8.6E-26 219.3 15.0 252 381-637 64-329 (1049)
155 KOG0267 Microtubule severing p 99.8 3.8E-21 8.1E-26 207.6 10.8 233 318-582 27-259 (825)
156 COG2319 FOG: WD40 repeat [Gene 99.8 9.2E-17 2E-21 187.4 49.1 373 422-921 61-443 (466)
157 KOG4497 Uncharacterized conser 99.8 3.4E-19 7.4E-24 174.8 23.0 407 386-912 13-424 (447)
158 KOG2445 Nuclear pore complex c 99.8 1.4E-18 3E-23 169.4 25.4 262 318-601 12-331 (361)
159 KOG1034 Transcriptional repres 99.8 4.1E-19 8.8E-24 174.7 21.3 299 737-1065 36-383 (385)
160 KOG0302 Ribosome Assembly prot 99.8 5.8E-19 1.3E-23 176.6 22.4 271 309-632 141-435 (440)
161 KOG1034 Transcriptional repres 99.8 3.3E-19 7.1E-24 175.3 19.6 259 318-634 88-382 (385)
162 KOG0303 Actin-binding protein 99.8 9.1E-19 2E-23 176.2 21.9 235 376-617 76-321 (472)
163 COG2319 FOG: WD40 repeat [Gene 99.8 8.9E-16 1.9E-20 179.1 50.7 371 377-879 61-443 (466)
164 KOG4378 Nuclear protein COP1 [ 99.8 1.3E-18 2.8E-23 179.7 22.7 277 342-647 12-292 (673)
165 KOG0302 Ribosome Assembly prot 99.8 3.9E-19 8.4E-24 177.9 18.3 175 309-503 200-379 (440)
166 KOG4378 Nuclear protein COP1 [ 99.8 2.1E-18 4.6E-23 178.0 23.5 215 745-995 85-305 (673)
167 KOG1524 WD40 repeat-containing 99.8 2.4E-17 5.3E-22 171.9 29.5 492 379-1016 12-526 (737)
168 KOG1009 Chromatin assembly com 99.8 1.6E-17 3.6E-22 168.3 25.6 319 739-1086 13-394 (434)
169 KOG4328 WD40 protein [Function 99.8 9.6E-18 2.1E-22 172.4 23.9 312 456-878 172-495 (498)
170 KOG2919 Guanine nucleotide-bin 99.8 1.4E-17 3E-22 163.4 22.5 227 748-1005 120-362 (406)
171 KOG2919 Guanine nucleotide-bin 99.8 1.3E-17 2.8E-22 163.7 22.0 288 322-626 52-361 (406)
172 KOG0270 WD40 repeat-containing 99.8 5.8E-18 1.3E-22 173.5 19.4 265 320-597 174-455 (463)
173 KOG0303 Actin-binding protein 99.8 2E-17 4.3E-22 166.6 22.7 253 383-644 29-303 (472)
174 KOG1334 WD40 repeat protein [G 99.8 1.4E-18 2.9E-23 179.8 14.3 299 312-637 134-468 (559)
175 KOG1912 WD40 repeat protein [G 99.8 4.3E-16 9.2E-21 169.7 33.6 620 320-1016 16-744 (1062)
176 KOG0307 Vesicle coat complex C 99.8 2.1E-18 4.6E-23 197.2 15.4 261 311-594 56-330 (1049)
177 KOG0649 WD40 repeat protein [G 99.8 5.4E-16 1.2E-20 146.2 26.3 281 321-632 12-313 (325)
178 KOG1912 WD40 repeat protein [G 99.8 9.4E-15 2E-19 159.4 39.4 606 381-1066 15-742 (1062)
179 KOG1188 WD40 repeat protein [G 99.8 6.1E-17 1.3E-21 160.6 19.6 275 334-636 42-347 (376)
180 KOG2110 Uncharacterized conser 99.7 1.2E-15 2.5E-20 153.4 28.4 251 805-1077 4-260 (391)
181 KOG1310 WD40 repeat protein [G 99.7 2.9E-16 6.2E-21 164.5 24.2 248 376-645 45-313 (758)
182 KOG4497 Uncharacterized conser 99.7 4.2E-16 9E-21 153.3 23.8 383 324-870 13-424 (447)
183 KOG0649 WD40 repeat protein [G 99.7 1.5E-15 3.3E-20 143.2 26.2 254 740-1019 11-279 (325)
184 KOG1188 WD40 repeat protein [G 99.7 5E-17 1.1E-21 161.2 17.2 293 442-768 42-345 (376)
185 KOG4227 WD40 repeat protein [G 99.7 3.4E-16 7.5E-21 156.9 22.8 297 315-635 52-387 (609)
186 KOG1524 WD40 repeat-containing 99.7 1.2E-15 2.6E-20 159.4 27.4 268 317-631 12-282 (737)
187 KOG0290 Conserved WD40 repeat- 99.7 7.6E-16 1.6E-20 149.2 24.0 288 310-626 35-357 (364)
188 KOG0644 Uncharacterized conser 99.7 6.3E-18 1.4E-22 185.1 11.0 279 315-637 186-470 (1113)
189 KOG0642 Cell-cycle nuclear pro 99.7 3.1E-17 6.6E-22 173.4 15.3 250 377-637 290-563 (577)
190 PRK11028 6-phosphogluconolacto 99.7 1.2E-15 2.5E-20 169.4 28.1 273 706-1013 6-304 (330)
191 KOG1007 WD repeat protein TSSC 99.7 3.8E-16 8.3E-21 151.0 19.4 284 270-591 55-361 (370)
192 KOG0642 Cell-cycle nuclear pro 99.7 6.3E-17 1.4E-21 171.0 14.9 267 315-602 289-572 (577)
193 KOG0644 Uncharacterized conser 99.7 2.1E-17 4.6E-22 181.1 11.5 237 377-637 186-428 (1113)
194 KOG0322 G-protein beta subunit 99.7 3.2E-16 6.9E-21 149.8 17.8 307 554-919 8-322 (323)
195 KOG0322 G-protein beta subunit 99.7 2.1E-16 4.5E-21 151.0 16.2 284 317-634 12-322 (323)
196 PRK11028 6-phosphogluconolacto 99.7 3.7E-14 8.1E-19 157.4 36.5 273 333-636 3-305 (330)
197 KOG4227 WD40 repeat protein [G 99.7 2.9E-15 6.2E-20 150.4 22.0 314 736-1077 53-397 (609)
198 KOG1007 WD repeat protein TSSC 99.7 4.3E-15 9.4E-20 143.8 22.1 251 375-635 57-361 (370)
199 KOG1587 Cytoplasmic dynein int 99.7 8.1E-15 1.8E-19 164.6 27.8 251 379-637 240-518 (555)
200 KOG1587 Cytoplasmic dynein int 99.7 6.3E-15 1.4E-19 165.5 26.0 271 299-592 223-517 (555)
201 KOG2110 Uncharacterized conser 99.7 7.4E-14 1.6E-18 140.6 30.6 243 380-637 4-250 (391)
202 KOG1517 Guanine nucleotide bin 99.7 8.2E-15 1.8E-19 165.3 24.9 305 427-880 1065-1383(1387)
203 KOG0771 Prolactin regulatory e 99.7 7.2E-16 1.6E-20 158.1 14.9 198 810-1014 148-355 (398)
204 KOG1240 Protein kinase contain 99.7 2.7E-14 5.8E-19 164.0 29.0 255 377-637 1044-1336(1431)
205 PRK01742 tolB translocation pr 99.7 8.7E-15 1.9E-19 167.2 25.4 235 341-616 183-426 (429)
206 KOG1310 WD40 repeat protein [G 99.7 1.8E-15 3.8E-20 158.7 17.5 164 317-501 48-230 (758)
207 KOG0290 Conserved WD40 repeat- 99.7 2.1E-14 4.6E-19 139.3 23.3 241 805-1056 95-357 (364)
208 KOG1517 Guanine nucleotide bin 99.7 1.9E-14 4.1E-19 162.4 26.3 201 812-1016 1171-1384(1387)
209 KOG1523 Actin-related protein 99.7 2.9E-14 6.4E-19 140.6 24.2 228 318-571 9-259 (361)
210 KOG0974 WD-repeat protein WDR6 99.7 1.5E-12 3.3E-17 148.4 41.0 196 320-550 88-290 (967)
211 KOG1334 WD40 repeat protein [G 99.6 3E-15 6.5E-20 155.4 15.2 324 421-881 137-469 (559)
212 PF02239 Cytochrom_D1: Cytochr 99.6 6.5E-13 1.4E-17 146.1 33.7 319 539-978 15-356 (369)
213 KOG0771 Prolactin regulatory e 99.6 3.1E-15 6.7E-20 153.5 14.1 197 851-1066 148-355 (398)
214 KOG2139 WD40 repeat protein [G 99.6 2.4E-13 5.3E-18 136.1 26.7 285 319-634 98-430 (445)
215 COG4946 Uncharacterized protei 99.6 6.2E-11 1.4E-15 123.0 44.0 145 738-910 358-508 (668)
216 KOG1523 Actin-related protein 99.6 9.5E-14 2.1E-18 137.0 22.5 234 381-626 10-269 (361)
217 PF02239 Cytochrom_D1: Cytochr 99.6 1E-12 2.2E-17 144.6 33.3 319 487-925 9-352 (369)
218 PF04762 IKI3: IKI3 family; I 99.6 2.5E-09 5.4E-14 130.7 65.2 509 379-1065 73-639 (928)
219 KOG2139 WD40 repeat protein [G 99.6 3.1E-13 6.6E-18 135.4 25.3 261 738-1013 139-431 (445)
220 KOG0974 WD-repeat protein WDR6 99.6 1E-11 2.3E-16 141.7 39.8 199 427-636 88-289 (967)
221 KOG1240 Protein kinase contain 99.6 3.2E-13 7E-18 155.3 27.8 265 309-592 1037-1335(1431)
222 PRK01742 tolB translocation pr 99.6 8.3E-14 1.8E-18 159.2 23.2 214 805-1044 202-425 (429)
223 KOG2111 Uncharacterized conser 99.6 3E-12 6.5E-17 126.7 29.4 238 383-637 7-258 (346)
224 COG4946 Uncharacterized protei 99.6 3E-10 6.5E-15 118.0 43.9 526 310-1014 69-655 (668)
225 PRK03629 tolB translocation pr 99.6 2E-12 4.3E-17 147.4 30.4 237 343-615 180-427 (429)
226 KOG1832 HIV-1 Vpr-binding prot 99.6 5.2E-15 1.1E-19 163.2 8.2 216 377-623 1097-1319(1516)
227 KOG2321 WD40 repeat protein [G 99.6 6E-13 1.3E-17 141.0 22.6 289 311-636 43-344 (703)
228 KOG2394 WD40 protein DMR-N9 [G 99.5 3.6E-13 7.8E-18 141.7 20.6 117 806-923 290-455 (636)
229 KOG2111 Uncharacterized conser 99.5 2.5E-12 5.3E-17 127.3 24.6 241 807-1069 6-260 (346)
230 KOG1272 WD40-repeat-containing 99.5 4.2E-14 9.2E-19 146.0 11.9 288 319-645 129-419 (545)
231 PRK05137 tolB translocation pr 99.5 4.2E-12 9.1E-17 145.9 29.8 222 377-615 197-432 (435)
232 PF04762 IKI3: IKI3 family; I 99.5 3.9E-09 8.4E-14 129.1 56.6 577 318-1018 74-689 (928)
233 KOG2394 WD40 protein DMR-N9 [G 99.5 4.6E-13 1E-17 140.9 19.3 214 816-1069 183-456 (636)
234 KOG2041 WD40 repeat protein [G 99.5 8.8E-12 1.9E-16 135.1 28.8 519 379-1014 12-620 (1189)
235 KOG2041 WD40 repeat protein [G 99.5 1.2E-10 2.6E-15 126.5 37.2 511 318-970 13-620 (1189)
236 PRK04922 tolB translocation pr 99.5 2.3E-12 5E-17 147.7 25.9 238 342-615 184-432 (433)
237 PRK03629 tolB translocation pr 99.5 5.3E-12 1.1E-16 143.9 27.0 236 300-571 181-427 (429)
238 PRK02889 tolB translocation pr 99.5 5E-12 1.1E-16 144.3 26.8 225 377-616 191-425 (427)
239 PF10282 Lactonase: Lactonase, 99.5 2.8E-10 6E-15 126.1 39.3 208 808-1018 88-329 (345)
240 KOG2315 Predicted translation 99.5 8.3E-11 1.8E-15 125.5 33.0 284 741-1067 75-392 (566)
241 KOG1409 Uncharacterized conser 99.5 1.8E-12 3.9E-17 129.2 18.2 344 550-1014 14-395 (404)
242 COG5354 Uncharacterized protei 99.5 4.6E-11 1E-15 125.6 28.9 283 318-637 31-350 (561)
243 PRK04922 tolB translocation pr 99.5 8E-12 1.7E-16 143.3 25.7 236 300-571 186-432 (433)
244 KOG2321 WD40 repeat protein [G 99.5 1.2E-11 2.6E-16 131.4 23.3 197 810-1017 137-347 (703)
245 KOG1272 WD40-repeat-containing 99.5 2.4E-13 5.1E-18 140.6 10.1 231 806-1064 129-361 (545)
246 COG2706 3-carboxymuconate cycl 99.4 2.7E-10 5.8E-15 116.1 31.3 277 711-1014 15-322 (346)
247 KOG2315 Predicted translation 99.4 1.5E-10 3.3E-15 123.5 29.9 331 514-921 34-391 (566)
248 KOG2314 Translation initiation 99.4 4.5E-11 9.8E-16 126.5 25.6 314 291-635 216-573 (698)
249 PRK02889 tolB translocation pr 99.4 2.1E-11 4.5E-16 139.3 25.3 224 315-572 191-425 (427)
250 KOG3881 Uncharacterized conser 99.4 2.1E-11 4.6E-16 124.1 21.6 273 318-615 54-341 (412)
251 PRK05137 tolB translocation pr 99.4 9.1E-11 2E-15 134.8 27.2 236 300-571 184-432 (435)
252 KOG1354 Serine/threonine prote 99.4 1.3E-10 2.8E-15 116.0 23.6 357 426-967 25-432 (433)
253 PF08662 eIF2A: Eukaryotic tra 99.4 3.9E-11 8.5E-16 119.7 20.4 155 851-1022 9-187 (194)
254 TIGR02658 TTQ_MADH_Hv methylam 99.4 3.3E-09 7.2E-14 113.6 35.4 204 811-1022 109-339 (352)
255 COG5354 Uncharacterized protei 99.4 1.7E-09 3.6E-14 114.2 31.1 359 497-1005 15-421 (561)
256 KOG1354 Serine/threonine prote 99.3 3E-10 6.6E-15 113.5 23.7 264 316-594 22-362 (433)
257 PF10282 Lactonase: Lactonase, 99.3 1.6E-08 3.4E-13 112.2 40.0 246 381-635 36-322 (345)
258 PRK00178 tolB translocation pr 99.3 6.7E-10 1.4E-14 128.1 30.2 223 377-615 194-427 (430)
259 KOG2314 Translation initiation 99.3 1.6E-09 3.6E-14 115.0 29.5 328 516-1014 212-574 (698)
260 PRK04792 tolB translocation pr 99.3 7.3E-10 1.6E-14 126.9 29.5 223 377-615 213-446 (448)
261 PF08662 eIF2A: Eukaryotic tra 99.3 1.1E-10 2.5E-15 116.3 19.6 111 805-921 58-180 (194)
262 TIGR02800 propeller_TolB tol-p 99.3 6.6E-10 1.4E-14 128.2 29.1 210 377-600 185-405 (417)
263 PRK01029 tolB translocation pr 99.3 1.1E-09 2.4E-14 124.3 29.8 228 377-617 180-426 (428)
264 KOG3881 Uncharacterized conser 99.3 1.8E-10 4E-15 117.4 20.7 245 380-637 54-322 (412)
265 PRK00178 tolB translocation pr 99.3 7.5E-10 1.6E-14 127.7 27.8 225 314-571 193-427 (430)
266 PRK01029 tolB translocation pr 99.3 9.7E-10 2.1E-14 124.7 26.1 226 318-573 183-426 (428)
267 PRK04792 tolB translocation pr 99.3 8.1E-10 1.8E-14 126.5 25.4 223 316-571 214-446 (448)
268 TIGR02800 propeller_TolB tol-p 99.3 1E-09 2.2E-14 126.7 26.3 210 315-557 185-405 (417)
269 KOG4547 WD40 repeat-containing 99.3 5.9E-10 1.3E-14 120.2 21.4 193 391-592 3-221 (541)
270 KOG4547 WD40 repeat-containing 99.2 2.3E-09 5E-14 115.8 24.3 189 334-548 7-220 (541)
271 COG2706 3-carboxymuconate cycl 99.2 7.3E-08 1.6E-12 98.6 33.5 290 298-614 16-345 (346)
272 KOG0280 Uncharacterized conser 99.2 1.9E-09 4.2E-14 105.8 21.2 251 318-593 68-335 (339)
273 TIGR02658 TTQ_MADH_Hv methylam 99.2 6.6E-08 1.4E-12 103.7 34.7 267 310-601 37-340 (352)
274 KOG1409 Uncharacterized conser 99.2 7.2E-10 1.6E-14 111.0 18.3 203 421-637 19-229 (404)
275 TIGR03300 assembly_YfgL outer 99.1 8.7E-08 1.9E-12 108.6 30.6 304 485-917 66-376 (377)
276 KOG0280 Uncharacterized conser 99.0 2.6E-08 5.7E-13 98.0 19.7 198 809-1015 124-335 (339)
277 TIGR03300 assembly_YfgL outer 99.0 3.9E-07 8.5E-12 103.3 32.6 183 442-637 67-261 (377)
278 PLN02919 haloacid dehalogenase 99.0 3.5E-07 7.6E-12 114.6 31.7 261 743-1017 571-892 (1057)
279 PLN02919 haloacid dehalogenase 99.0 4.5E-07 9.8E-12 113.6 32.0 254 810-1069 571-892 (1057)
280 KOG0309 Conserved WD40 repeat- 98.9 1E-08 2.2E-13 112.5 14.2 279 290-592 29-340 (1081)
281 PF15492 Nbas_N: Neuroblastoma 98.9 4.4E-07 9.6E-12 90.2 24.3 207 811-1022 2-268 (282)
282 PRK04043 tolB translocation pr 98.9 4.4E-07 9.4E-12 102.3 27.9 216 299-550 170-402 (419)
283 KOG1064 RAVE (regulator of V-A 98.9 8.2E-09 1.8E-13 123.9 13.6 200 378-601 2205-2408(2439)
284 KOG3914 WD repeat protein WDR4 98.9 2.8E-08 6.1E-13 102.5 13.7 159 893-1069 65-227 (390)
285 KOG4190 Uncharacterized conser 98.8 8.9E-09 1.9E-13 108.9 8.8 220 840-1079 728-962 (1034)
286 KOG1897 Damage-specific DNA bi 98.8 0.00082 1.8E-08 78.1 50.9 576 389-1066 265-943 (1096)
287 PF07433 DUF1513: Protein of u 98.8 2.3E-06 5.1E-11 88.2 24.9 184 810-1003 54-276 (305)
288 KOG3914 WD repeat protein WDR4 98.8 5.9E-08 1.3E-12 100.2 13.3 163 322-510 65-231 (390)
289 KOG3617 WD40 and TPR repeat-co 98.8 5.2E-07 1.1E-11 100.8 21.3 508 324-973 20-589 (1416)
290 KOG1064 RAVE (regulator of V-A 98.8 2.9E-08 6.2E-13 119.5 12.0 221 394-643 2181-2405(2439)
291 KOG3617 WD40 and TPR repeat-co 98.8 2.5E-06 5.3E-11 95.6 25.9 339 385-825 19-374 (1416)
292 KOG4190 Uncharacterized conser 98.8 4.1E-08 9E-13 104.0 11.7 309 296-631 700-1032(1034)
293 PF07433 DUF1513: Protein of u 98.8 6.7E-06 1.5E-10 84.9 26.8 254 323-628 8-278 (305)
294 PRK04043 tolB translocation pr 98.7 5.6E-06 1.2E-10 93.4 28.6 197 383-593 189-402 (419)
295 PF15492 Nbas_N: Neuroblastoma 98.7 1.3E-05 2.9E-10 79.9 26.8 247 324-601 2-269 (282)
296 KOG4532 WD40-like repeat conta 98.7 1.7E-06 3.7E-11 84.2 19.9 148 384-533 161-321 (344)
297 PF08450 SGL: SMP-30/Gluconola 98.7 1.6E-05 3.5E-10 83.9 29.8 218 386-624 4-244 (246)
298 KOG4532 WD40-like repeat conta 98.7 4.3E-06 9.4E-11 81.5 21.8 240 818-1068 84-334 (344)
299 PF13360 PQQ_2: PQQ-like domai 98.7 3.2E-06 6.9E-11 89.1 23.6 224 826-1072 2-237 (238)
300 COG5170 CDC55 Serine/threonine 98.7 4.4E-07 9.6E-12 89.8 14.6 249 380-635 25-367 (460)
301 PRK11138 outer membrane biogen 98.7 1.6E-05 3.4E-10 90.5 29.6 307 485-919 70-393 (394)
302 COG5170 CDC55 Serine/threonine 98.7 2.9E-07 6.3E-12 91.1 12.8 119 804-923 170-312 (460)
303 PRK11138 outer membrane biogen 98.7 3E-05 6.5E-10 88.2 31.4 210 826-1064 169-393 (394)
304 KOG4714 Nucleoporin [Nuclear s 98.7 4.2E-07 9.1E-12 88.1 13.3 209 322-549 39-255 (319)
305 PF06433 Me-amine-dh_H: Methyl 98.6 6.2E-05 1.4E-09 78.8 29.5 204 812-1022 100-329 (342)
306 KOG0309 Conserved WD40 repeat- 98.6 9.4E-07 2E-11 97.5 15.9 294 314-637 19-341 (1081)
307 PF08450 SGL: SMP-30/Gluconola 98.6 0.0002 4.3E-09 75.6 32.9 220 324-580 4-244 (246)
308 KOG1832 HIV-1 Vpr-binding prot 98.6 7.7E-08 1.7E-12 107.7 6.4 255 318-623 1100-1377(1516)
309 PF10607 CLTH: CTLH/CRA C-term 98.6 1E-07 2.2E-12 90.9 6.3 133 2-145 6-141 (145)
310 KOG2695 WD40 repeat protein [G 98.5 2.8E-07 6.1E-12 92.8 9.1 164 326-513 218-387 (425)
311 KOG0882 Cyclophilin-related pe 98.5 2.7E-06 5.9E-11 88.9 15.6 256 379-645 7-314 (558)
312 KOG0882 Cyclophilin-related pe 98.5 2.1E-06 4.5E-11 89.7 14.5 298 738-1062 8-369 (558)
313 KOG1897 Damage-specific DNA bi 98.5 0.0066 1.4E-07 71.0 51.8 633 315-1011 302-1002(1096)
314 KOG1645 RING-finger-containing 98.5 2.4E-05 5.2E-10 81.0 21.5 249 376-635 188-461 (463)
315 PRK02888 nitrous-oxide reducta 98.5 6E-05 1.3E-09 85.3 26.7 348 396-909 69-450 (635)
316 PF13360 PQQ_2: PQQ-like domai 98.5 9.1E-05 2E-09 78.0 26.6 222 401-640 1-235 (238)
317 PF00930 DPPIV_N: Dipeptidyl p 98.5 0.00018 3.9E-09 80.2 30.1 256 328-623 1-298 (353)
318 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00033 7.3E-09 68.5 26.6 146 327-500 18-163 (354)
319 KOG1920 IkappaB kinase complex 98.4 7.2E-05 1.6E-09 88.5 26.1 279 319-634 68-364 (1265)
320 KOG4714 Nucleoporin [Nuclear s 98.4 1.5E-06 3.3E-11 84.3 10.4 198 850-1066 39-255 (319)
321 PRK02888 nitrous-oxide reducta 98.4 7.7E-05 1.7E-09 84.5 25.3 187 812-1014 198-405 (635)
322 PF00400 WD40: WD domain, G-be 98.4 1E-06 2.2E-11 61.9 6.5 39 880-918 1-39 (39)
323 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.0016 3.5E-08 63.9 29.1 137 485-630 24-160 (354)
324 KOG1275 PAB-dependent poly(A) 98.3 1.3E-05 2.9E-10 91.2 15.5 182 817-1012 146-341 (1118)
325 smart00668 CTLH C-terminal to 98.3 3.2E-07 7E-12 71.2 2.1 52 2-54 6-57 (58)
326 KOG3621 WD40 repeat-containing 98.3 0.00013 2.7E-09 81.6 22.1 282 318-637 32-355 (726)
327 PF06433 Me-amine-dh_H: Methyl 98.2 0.00036 7.7E-09 73.3 23.8 284 541-888 18-330 (342)
328 PF14583 Pectate_lyase22: Olig 98.2 0.0016 3.5E-08 69.9 28.5 228 387-626 41-303 (386)
329 PF14583 Pectate_lyase22: Olig 98.2 0.0023 5E-08 68.7 29.6 281 324-634 40-380 (386)
330 KOG1920 IkappaB kinase complex 98.2 0.0002 4.4E-09 84.9 23.3 248 381-643 68-330 (1265)
331 PF00400 WD40: WD domain, G-be 98.2 5E-06 1.1E-10 58.4 6.6 38 972-1011 2-39 (39)
332 KOG1645 RING-finger-containing 98.2 7.3E-05 1.6E-09 77.6 17.3 244 318-591 192-461 (463)
333 KOG2695 WD40 repeat protein [G 98.2 3E-06 6.5E-11 85.6 7.0 139 314-468 247-386 (425)
334 KOG2114 Vacuolar assembly/sort 98.2 0.00033 7.1E-09 80.1 23.6 198 812-1017 29-247 (933)
335 KOG2066 Vacuolar assembly/sort 98.2 3.7E-05 8E-10 86.9 15.8 190 847-1065 39-233 (846)
336 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0012 2.6E-08 73.7 27.8 299 523-909 1-346 (353)
337 KOG2114 Vacuolar assembly/sort 98.2 0.00018 4E-09 82.0 20.6 205 854-1073 30-251 (933)
338 PF11768 DUF3312: Protein of u 98.0 0.00012 2.6E-09 80.8 16.0 83 309-413 249-331 (545)
339 PF11768 DUF3312: Protein of u 98.0 0.0002 4.4E-09 79.0 17.1 137 302-461 188-332 (545)
340 KOG1275 PAB-dependent poly(A) 98.0 0.00011 2.3E-09 84.2 15.0 185 442-634 149-341 (1118)
341 KOG3621 WD40 repeat-containing 98.0 0.00083 1.8E-08 75.3 21.0 81 556-637 28-108 (726)
342 KOG2066 Vacuolar assembly/sort 98.0 0.00049 1.1E-08 78.2 19.4 186 741-969 41-233 (846)
343 cd00216 PQQ_DH Dehydrogenases 98.0 0.011 2.4E-07 68.9 31.6 110 485-601 62-193 (488)
344 PF02897 Peptidase_S9_N: Proly 97.9 0.01 2.2E-07 68.2 31.0 250 322-597 126-410 (414)
345 cd00216 PQQ_DH Dehydrogenases 97.9 0.0069 1.5E-07 70.7 28.9 247 819-1083 111-442 (488)
346 COG0823 TolB Periplasmic compo 97.9 0.0022 4.8E-08 72.0 23.2 193 422-626 188-390 (425)
347 PF08596 Lgl_C: Lethal giant l 97.9 0.0062 1.3E-07 67.8 25.7 241 383-633 3-333 (395)
348 PF08596 Lgl_C: Lethal giant l 97.8 0.0042 9E-08 69.1 23.9 253 321-580 3-325 (395)
349 PF04053 Coatomer_WDAD: Coatom 97.8 0.0037 8E-08 70.5 23.2 219 806-1066 32-263 (443)
350 PF06977 SdiA-regulated: SdiA- 97.8 0.012 2.7E-07 60.5 24.8 191 319-532 21-239 (248)
351 PF04841 Vps16_N: Vps16, N-ter 97.8 0.013 2.7E-07 66.3 27.5 199 812-1022 34-255 (410)
352 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.15 3.2E-06 59.8 37.2 61 827-889 441-501 (527)
353 PF04053 Coatomer_WDAD: Coatom 97.8 0.0018 3.9E-08 72.9 20.2 222 740-1016 33-265 (443)
354 KOG2659 LisH motif-containing 97.7 4.8E-05 1E-09 74.2 5.8 130 3-145 70-204 (228)
355 COG0823 TolB Periplasmic compo 97.7 0.0034 7.5E-08 70.5 20.4 189 318-535 191-390 (425)
356 PRK13616 lipoprotein LpqB; Pro 97.7 0.0084 1.8E-07 70.5 24.2 216 847-1079 349-582 (591)
357 KOG1008 Uncharacterized conser 97.6 2E-05 4.3E-10 86.5 1.9 205 318-548 55-275 (783)
358 COG3391 Uncharacterized conser 97.6 0.017 3.6E-07 65.0 25.2 209 808-1024 75-294 (381)
359 PF06977 SdiA-regulated: SdiA- 97.6 0.028 6E-07 57.9 23.9 202 805-1010 20-247 (248)
360 COG3391 Uncharacterized conser 97.6 0.15 3.3E-06 57.3 32.0 264 310-601 21-293 (381)
361 PF02897 Peptidase_S9_N: Proly 97.6 0.11 2.5E-06 59.6 31.9 245 383-638 125-407 (414)
362 COG3490 Uncharacterized protei 97.5 0.05 1.1E-06 54.8 22.9 254 565-918 71-346 (366)
363 PRK13616 lipoprotein LpqB; Pro 97.5 0.0053 1.1E-07 72.1 19.3 186 807-1005 350-560 (591)
364 PF00780 CNH: CNH domain; Int 97.5 0.12 2.6E-06 55.5 28.2 232 391-649 5-268 (275)
365 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.4 0.1 2.3E-06 61.1 29.0 251 820-1085 122-510 (527)
366 PF04841 Vps16_N: Vps16, N-ter 97.4 0.32 7E-06 55.1 31.8 137 813-978 185-323 (410)
367 PF00780 CNH: CNH domain; Int 97.3 0.11 2.4E-06 55.8 26.0 231 749-1022 5-264 (275)
368 KOG1008 Uncharacterized conser 97.3 0.00027 5.8E-09 78.0 4.8 200 806-1014 56-276 (783)
369 COG3490 Uncharacterized protei 97.3 0.097 2.1E-06 52.8 21.8 248 311-589 59-346 (366)
370 COG3386 Gluconolactonase [Carb 97.3 0.092 2E-06 56.2 23.7 224 324-580 29-274 (307)
371 PF03178 CPSF_A: CPSF A subuni 97.3 0.12 2.5E-06 57.1 25.7 218 404-632 3-262 (321)
372 PF08553 VID27: VID27 cytoplas 97.3 0.051 1.1E-06 64.8 23.6 146 859-1012 492-646 (794)
373 PF03178 CPSF_A: CPSF A subuni 97.1 0.075 1.6E-06 58.5 22.7 213 343-587 3-261 (321)
374 COG3386 Gluconolactonase [Carb 97.1 0.21 4.6E-06 53.5 25.0 220 388-624 31-274 (307)
375 KOG4640 Anaphase-promoting com 97.0 0.0029 6.2E-08 70.3 9.6 93 320-435 21-114 (665)
376 PF14655 RAB3GAP2_N: Rab3 GTPa 96.9 0.25 5.5E-06 54.9 23.8 82 516-601 309-408 (415)
377 KOG2395 Protein involved in va 96.9 0.025 5.4E-07 61.7 15.2 200 382-589 277-498 (644)
378 PRK10115 protease 2; Provision 96.9 0.94 2E-05 55.2 30.7 245 382-637 127-396 (686)
379 PF05694 SBP56: 56kDa selenium 96.8 0.53 1.2E-05 51.5 23.9 149 484-632 87-274 (461)
380 PF08553 VID27: VID27 cytoplas 96.8 0.041 9E-07 65.6 17.1 142 442-590 496-646 (794)
381 smart00320 WD40 WD40 repeats. 96.8 0.0035 7.6E-08 43.0 5.3 39 880-918 2-40 (40)
382 PHA02713 hypothetical protein; 96.7 0.1 2.2E-06 61.9 19.7 228 828-1081 273-547 (557)
383 PF10647 Gmad1: Lipoprotein Lp 96.7 0.49 1.1E-05 49.6 22.8 148 849-1005 25-187 (253)
384 PF10647 Gmad1: Lipoprotein Lp 96.6 0.34 7.3E-06 50.9 21.0 147 807-958 24-183 (253)
385 PRK10115 protease 2; Provision 96.6 3 6.4E-05 50.9 35.6 243 321-594 128-397 (686)
386 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.16 3.4E-06 44.1 14.8 102 384-497 2-109 (111)
387 PF05096 Glu_cyclase_2: Glutam 96.5 1.2 2.7E-05 45.7 24.2 188 806-1002 44-249 (264)
388 KOG4441 Proteins containing BT 96.5 0.22 4.8E-06 58.8 20.9 235 390-637 282-548 (571)
389 KOG4640 Anaphase-promoting com 96.5 0.011 2.4E-07 65.9 9.3 92 806-899 20-114 (665)
390 PF07995 GSDH: Glucose / Sorbo 96.5 1.2 2.6E-05 49.0 25.1 243 808-1060 3-330 (331)
391 PF14655 RAB3GAP2_N: Rab3 GTPa 96.4 0.91 2E-05 50.6 23.2 83 805-887 306-407 (415)
392 COG3204 Uncharacterized protei 96.3 0.87 1.9E-05 46.8 20.6 201 735-964 81-307 (316)
393 PF14727 PHTB1_N: PTHB1 N-term 96.3 2.6 5.5E-05 47.2 32.9 280 750-1066 36-361 (418)
394 smart00320 WD40 WD40 repeats. 96.3 0.01 2.3E-07 40.5 5.4 31 981-1011 10-40 (40)
395 KOG0396 Uncharacterized conser 96.3 0.016 3.4E-07 60.4 8.5 85 3-88 158-242 (389)
396 KOG4499 Ca2+-binding protein R 96.3 0.61 1.3E-05 45.8 18.4 47 811-857 216-263 (310)
397 PF15390 DUF4613: Domain of un 96.3 0.13 2.8E-06 57.5 15.6 158 847-1015 19-188 (671)
398 KOG2395 Protein involved in va 96.1 0.11 2.3E-06 57.1 14.0 144 862-1012 348-499 (644)
399 PF14727 PHTB1_N: PTHB1 N-term 96.1 3.1 6.8E-05 46.6 32.0 278 328-637 33-362 (418)
400 KOG2079 Vacuolar assembly/sort 96.1 0.075 1.6E-06 63.2 13.5 104 392-501 98-202 (1206)
401 KOG2079 Vacuolar assembly/sort 96.1 0.056 1.2E-06 64.3 12.3 101 817-920 98-203 (1206)
402 TIGR03074 PQQ_membr_DH membran 96.0 5.6 0.00012 48.7 40.4 198 442-639 196-481 (764)
403 COG3204 Uncharacterized protei 96.0 0.66 1.4E-05 47.6 17.8 170 886-1066 81-264 (316)
404 PHA02713 hypothetical protein; 95.9 0.44 9.5E-06 56.6 19.3 192 437-637 303-535 (557)
405 KOG4441 Proteins containing BT 95.8 0.91 2E-05 53.8 21.4 236 815-1076 282-555 (571)
406 PF05694 SBP56: 56kDa selenium 95.7 1.5 3.3E-05 48.0 20.2 190 812-1002 135-392 (461)
407 PF14783 BBS2_Mid: Ciliary BBS 95.7 0.58 1.3E-05 40.7 13.8 102 322-453 2-109 (111)
408 PF07995 GSDH: Glucose / Sorbo 95.6 4.6 9.9E-05 44.4 28.7 58 573-630 271-330 (331)
409 PF12894 Apc4_WD40: Anaphase-p 95.6 0.045 9.8E-07 39.5 5.7 34 380-414 10-43 (47)
410 KOG2444 WD40 repeat protein [G 95.3 0.054 1.2E-06 53.0 7.3 104 818-921 70-178 (238)
411 PF05096 Glu_cyclase_2: Glutam 95.3 3 6.5E-05 43.0 20.0 191 738-958 43-248 (264)
412 KOG1898 Splicing factor 3b, su 95.3 9.9 0.00021 46.2 35.3 104 812-920 939-1048(1205)
413 PF12894 Apc4_WD40: Anaphase-p 95.3 0.052 1.1E-06 39.2 5.3 33 319-353 11-43 (47)
414 KOG4499 Ca2+-binding protein R 95.3 1.3 2.7E-05 43.7 16.0 142 849-994 110-264 (310)
415 PF12234 Rav1p_C: RAVE protein 95.2 0.56 1.2E-05 54.8 16.3 112 428-547 31-155 (631)
416 TIGR03074 PQQ_membr_DH membran 95.1 5.3 0.00011 48.9 24.7 204 393-600 194-486 (764)
417 KOG2444 WD40 repeat protein [G 94.9 0.06 1.3E-06 52.7 6.2 110 955-1082 73-185 (238)
418 PF14870 PSII_BNR: Photosynthe 94.9 6.7 0.00014 42.0 32.2 153 805-966 143-301 (302)
419 COG4257 Vgb Streptogramin lyas 94.6 4.7 0.0001 41.0 18.5 206 849-1083 63-278 (353)
420 PRK13684 Ycf48-like protein; P 94.6 8.9 0.00019 42.2 31.1 156 847-1012 172-330 (334)
421 PF12234 Rav1p_C: RAVE protein 94.5 1 2.2E-05 52.7 15.8 119 846-969 28-156 (631)
422 KOG1898 Splicing factor 3b, su 94.3 17 0.00038 44.2 32.4 178 871-1067 854-1050(1205)
423 COG3823 Glutamine cyclotransfe 94.2 2.3 5E-05 41.3 14.7 178 817-1001 55-247 (262)
424 PF14870 PSII_BNR: Photosynthe 94.2 9.4 0.0002 40.8 31.1 231 808-1062 63-301 (302)
425 PHA03098 kelch-like protein; P 93.9 2.6 5.7E-05 50.3 18.9 193 391-594 293-514 (534)
426 KOG4659 Uncharacterized conser 93.9 23 0.0005 44.2 35.5 27 737-763 659-685 (1899)
427 PHA03098 kelch-like protein; P 93.9 2.2 4.8E-05 50.9 18.0 180 451-637 312-513 (534)
428 COG4590 ABC-type uncharacteriz 93.7 1.6 3.4E-05 47.2 13.9 160 805-974 219-391 (733)
429 KOG3630 Nuclear pore complex, 93.7 0.65 1.4E-05 56.0 12.2 146 806-957 100-260 (1405)
430 TIGR03118 PEPCTERM_chp_1 conse 93.4 11 0.00025 39.3 20.5 225 850-1083 25-313 (336)
431 PRK13684 Ycf48-like protein; P 93.3 15 0.00034 40.4 30.7 158 890-1065 172-331 (334)
432 PF15390 DUF4613: Domain of un 93.2 19 0.00041 41.2 29.2 59 944-1003 342-404 (671)
433 COG4257 Vgb Streptogramin lyas 93.1 12 0.00025 38.4 21.7 195 744-970 108-306 (353)
434 KOG2280 Vacuolar assembly/sort 93.0 4.9 0.00011 46.8 17.4 184 828-1025 65-258 (829)
435 PHA02790 Kelch-like protein; P 92.6 4.5 9.8E-05 47.2 17.5 183 817-1016 271-473 (480)
436 KOG2247 WD40 repeat-containing 92.6 0.021 4.6E-07 61.7 -1.5 238 744-1018 39-285 (615)
437 TIGR02604 Piru_Ver_Nterm putat 92.2 4.2 9E-05 45.6 16.1 104 891-1002 14-142 (367)
438 KOG1916 Nuclear protein, conta 92.2 0.28 6E-06 57.3 6.5 163 319-507 132-328 (1283)
439 PF10168 Nup88: Nuclear pore c 92.2 34 0.00074 41.7 25.1 94 805-921 83-180 (717)
440 PF13449 Phytase-like: Esteras 92.0 22 0.00048 39.0 23.2 163 847-1013 19-249 (326)
441 PF02333 Phytase: Phytase; In 92.0 23 0.0005 39.1 23.6 194 442-643 70-298 (381)
442 PF10168 Nup88: Nuclear pore c 91.8 7.5 0.00016 47.1 18.1 76 941-1016 85-182 (717)
443 PF03022 MRJP: Major royal jel 91.7 21 0.00046 38.2 20.7 171 828-1002 35-254 (287)
444 PLN00033 photosystem II stabil 91.7 27 0.00058 39.3 27.7 152 850-1010 241-396 (398)
445 KOG2377 Uncharacterized conser 91.3 1.7 3.6E-05 47.2 10.5 124 318-461 65-188 (657)
446 KOG2280 Vacuolar assembly/sort 91.3 8.5 0.00018 45.0 16.6 177 806-994 83-270 (829)
447 TIGR02604 Piru_Ver_Nterm putat 91.2 6.3 0.00014 44.2 16.1 149 848-1002 14-202 (367)
448 TIGR03118 PEPCTERM_chp_1 conse 91.2 22 0.00047 37.3 24.3 209 809-1025 25-291 (336)
449 PF10313 DUF2415: Uncharacteri 91.1 0.71 1.5E-05 32.3 5.0 33 320-352 1-35 (43)
450 COG5290 IkappaB kinase complex 90.8 23 0.00049 41.7 19.2 102 742-866 249-355 (1243)
451 PHA02790 Kelch-like protein; P 90.7 10 0.00022 44.3 17.7 185 442-637 274-472 (480)
452 KOG3630 Nuclear pore complex, 90.7 2.4 5.2E-05 51.5 12.1 146 428-579 102-261 (1405)
453 COG5167 VID27 Protein involved 90.7 6.2 0.00013 43.7 14.1 152 429-590 469-631 (776)
454 COG3292 Predicted periplasmic 90.6 24 0.00052 40.1 18.7 275 318-631 163-443 (671)
455 PF02333 Phytase: Phytase; In 90.6 31 0.00068 38.0 22.5 203 749-978 66-300 (381)
456 PF05935 Arylsulfotrans: Aryls 90.2 18 0.0004 42.0 19.0 148 868-1025 126-313 (477)
457 KOG1916 Nuclear protein, conta 90.2 0.33 7.2E-06 56.7 4.5 198 805-1012 131-373 (1283)
458 KOG2377 Uncharacterized conser 89.9 20 0.00043 39.4 16.8 157 850-1015 25-187 (657)
459 PRK14131 N-acetylneuraminic ac 89.8 39 0.00085 38.0 21.0 14 451-464 107-120 (376)
460 PF10313 DUF2415: Uncharacteri 89.8 1.1 2.5E-05 31.3 5.1 32 382-413 1-35 (43)
461 PF08728 CRT10: CRT10; InterP 89.4 19 0.00041 43.0 17.9 118 382-502 101-246 (717)
462 COG5276 Uncharacterized conser 89.4 29 0.00064 36.0 20.6 187 818-1014 96-286 (370)
463 PF14761 HPS3_N: Hermansky-Pud 89.3 21 0.00045 35.6 15.4 158 808-968 19-213 (215)
464 COG3823 Glutamine cyclotransfe 89.3 12 0.00026 36.6 13.2 192 852-1059 50-253 (262)
465 TIGR03548 mutarot_permut cycli 88.9 40 0.00087 37.0 22.4 108 442-552 75-198 (323)
466 PF10214 Rrn6: RNA polymerase 88.9 72 0.0016 39.8 26.8 167 846-1015 78-278 (765)
467 KOG1983 Tomosyn and related SN 88.8 5.5 0.00012 50.4 14.0 68 943-1017 201-268 (993)
468 PF03022 MRJP: Major royal jel 88.3 30 0.00064 37.1 17.5 166 451-622 35-252 (287)
469 KOG4460 Nuclear pore complex, 88.0 12 0.00026 41.8 13.9 40 1040-1079 171-212 (741)
470 PF11725 AvrE: Pathogenicity f 87.9 47 0.001 43.2 20.6 149 469-635 361-516 (1774)
471 TIGR03548 mutarot_permut cycli 87.6 43 0.00094 36.7 19.1 56 961-1017 139-198 (323)
472 KOG1900 Nuclear pore complex, 87.4 38 0.00083 42.7 19.2 144 867-1014 96-273 (1311)
473 PF08728 CRT10: CRT10; InterP 87.3 13 0.00028 44.3 14.9 174 818-1012 49-245 (717)
474 PF13449 Phytase-like: Esteras 87.1 32 0.00069 37.8 17.4 160 738-907 18-231 (326)
475 PF07676 PD40: WD40-like Beta 86.9 2.3 5E-05 29.3 5.5 30 318-347 7-38 (39)
476 smart00036 CNH Domain found in 86.7 51 0.0011 35.7 25.0 239 750-1022 12-279 (302)
477 TIGR03547 muta_rot_YjhT mutatr 86.5 49 0.0011 36.7 19.0 42 494-535 168-210 (346)
478 KOG1900 Nuclear pore complex, 86.4 7 0.00015 48.8 12.4 167 309-503 68-273 (1311)
479 KOG1983 Tomosyn and related SN 86.2 20 0.00043 45.5 16.8 34 320-354 36-69 (993)
480 COG1520 FOG: WD40-like repeat 85.9 65 0.0014 36.2 23.6 196 395-601 70-278 (370)
481 PRK13613 lipoprotein LpqB; Pro 85.0 84 0.0018 37.6 20.2 190 808-1007 364-576 (599)
482 PF14781 BBS2_N: Ciliary BBSom 84.9 25 0.00055 32.0 12.1 114 897-1021 5-133 (136)
483 KOG2817 Predicted E3 ubiquitin 84.8 1.3 2.7E-05 47.5 4.7 79 2-82 160-241 (394)
484 COG3292 Predicted periplasmic 84.1 86 0.0019 36.0 24.6 139 381-531 164-306 (671)
485 PF07569 Hira: TUP1-like enhan 83.6 7.4 0.00016 39.7 9.6 73 389-464 18-101 (219)
486 PLN02193 nitrile-specifier pro 83.3 99 0.0021 36.0 22.5 150 442-596 231-415 (470)
487 PLN00033 photosystem II stabil 83.2 86 0.0019 35.3 31.8 151 893-1062 241-396 (398)
488 PF07569 Hira: TUP1-like enhan 83.1 4.6 9.9E-05 41.2 7.9 73 898-970 18-96 (219)
489 PF14781 BBS2_N: Ciliary BBSom 82.7 38 0.00082 30.9 12.3 115 947-1073 5-133 (136)
490 PRK14131 N-acetylneuraminic ac 82.4 92 0.002 35.1 22.0 14 451-464 190-203 (376)
491 PF05935 Arylsulfotrans: Aryls 82.0 29 0.00062 40.4 14.9 129 946-1079 153-315 (477)
492 KOG2247 WD40 repeat-containing 81.1 0.33 7.1E-06 53.0 -1.3 141 291-456 40-186 (615)
493 PF04494 TFIID_90kDa: WD40 ass 81.0 1.7 3.6E-05 40.8 3.5 78 35-112 40-124 (142)
494 PF12657 TFIIIC_delta: Transcr 80.8 8.4 0.00018 37.7 8.6 31 382-412 86-122 (173)
495 PRK13615 lipoprotein LpqB; Pro 80.7 1.3E+02 0.0027 35.6 21.8 154 850-1014 336-503 (557)
496 PF12768 Rax2: Cortical protei 79.7 53 0.0011 34.9 14.4 94 342-458 16-123 (281)
497 COG5167 VID27 Protein involved 79.6 39 0.00084 37.8 13.4 144 814-969 475-632 (776)
498 PF12768 Rax2: Cortical protei 79.4 34 0.00075 36.2 13.0 103 451-555 17-130 (281)
499 TIGR03606 non_repeat_PQQ dehyd 79.1 45 0.00097 38.0 14.5 123 882-1005 21-167 (454)
500 PF07250 Glyoxal_oxid_N: Glyox 79.0 30 0.00065 35.7 12.0 144 497-644 49-205 (243)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-66 Score=519.05 Aligned_cols=456 Identities=22% Similarity=0.322 Sum_probs=377.8
Q ss_pred hhhhhhhcccChHHHHHHhccccccCCccccceeeehhhHhhhhHHHhcCChhHHHHHHHhccccccccChHHHHHHHHh
Q 001336 2 RYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQL 81 (1097)
Q Consensus 2 ~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~E~l~~~~~~~a~~~l~~~l~~l~~~~~~~~~~l~~l 81 (1097)
+.|.++|++|+|+.++..+..+...++...+. +.||+.||+|||++..|....|+.+||+++.+| .++.+++++|+.-
T Consensus 54 klf~q~vlqg~w~q~v~~~~~i~~~de~~~~e-a~fLv~kQ~fLEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~s 131 (519)
T KOG0293|consen 54 KLFDQQVLQGQWDQQVMSLVRISFEDERNRKE-AMFLVNKQIFLEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASS 131 (519)
T ss_pred HHHHHHHHcccHHHHHHHHhhccCcchhhhHH-HHHHHHHHHHHHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHH
Confidence 57999999999999999999886555554444 999999999999999999999999999999999 6699999999776
Q ss_pred hccc-cccchhhhhccCCchHHHHHHHHHHHhhcccCcCcccccCCCCCchhHHHHHHhhchhhhhhhcCCCCCCCCccc
Q 001336 82 LTLE-NFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLNWQHQLCKNPRANPDIKT 160 (1097)
Q Consensus 82 l~~~-~~~~~~~~~~~~~~~~~r~~l~~~~~~~i~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~s 160 (1097)
|..+ +...++.-. -......|++|+++|+++|||++| +|++||++||+||++||+++|.|||. .+..|
T Consensus 132 ll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---------lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvs 200 (519)
T KOG0293|consen 132 LLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---------LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVS 200 (519)
T ss_pred Hhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc---------CChHHHHHHHHHHHHHHHhHhHHhcc-cchhh
Confidence 6544 333333311 122567899999999999999999 99999999999999999999999994 55689
Q ss_pred cccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccccccc
Q 001336 161 LFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQPTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANN 240 (1097)
Q Consensus 161 l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1097)
||+||.|++ .++ | ++..
T Consensus 201 ll~Dh~c~~-----------~qi----p-------------~qt~----------------------------------- 217 (519)
T KOG0293|consen 201 LLSDHFCGR-----------LQI----P-------------SQTW----------------------------------- 217 (519)
T ss_pred hhhhcccCc-----------ccC----C-------------chhh-----------------------------------
Confidence 999999999 433 3 2222
Q ss_pred hhhhhcCCCCCCCCCCcccccCcchhhhhhccCcCCCccccccccccccceeeCCCCCCcceeecCCCCceEEEEeecCC
Q 001336 241 AAAILKRPRTPPTNNSAMDYQTADSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGS 320 (1097)
Q Consensus 241 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~h~~ 320 (1097)
++|. .|+||||
T Consensus 218 --qil~-----------------------------~htdEVW-------------------------------------- 228 (519)
T KOG0293|consen 218 --QILQ-----------------------------DHTDEVW-------------------------------------- 228 (519)
T ss_pred --hhHh-----------------------------hCCCcEE--------------------------------------
Confidence 3333 8999999
Q ss_pred CeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEE
Q 001336 321 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 400 (1097)
Q Consensus 321 ~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 400 (1097)
.+.||++|+|| |+++.|.+..||++.....+. +. ..+.+|..+|..+.||||.++|++|+
T Consensus 229 ---fl~FS~nGkyL-AsaSkD~Taiiw~v~~d~~~k-----l~-----------~tlvgh~~~V~yi~wSPDdryLlaCg 288 (519)
T KOG0293|consen 229 ---FLQFSHNGKYL-ASASKDSTAIIWIVVYDVHFK-----LK-----------KTLVGHSQPVSYIMWSPDDRYLLACG 288 (519)
T ss_pred ---EEEEcCCCeeE-eeccCCceEEEEEEecCccee-----ee-----------eeeecccCceEEEEECCCCCeEEecC
Confidence 78899999975 999999999999986554321 11 13789999999999999999999999
Q ss_pred CCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCC-cCeEEEeec
Q 001336 401 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE-SPVYSICPH 479 (1097)
Q Consensus 401 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~ 479 (1097)
.|..+.+||+.+|...... -.+|...+.+++|.|||. .+++|+.|+++..||+ +|+.+..+++-. ..|.++++
T Consensus 289 ~~e~~~lwDv~tgd~~~~y--~~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wdl-Dgn~~~~W~gvr~~~v~dlai- 362 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLY--PSGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWDL-DGNILGNWEGVRDPKVHDLAI- 362 (519)
T ss_pred chHheeeccCCcchhhhhc--ccCcCCCcceeEEccCCc--eeEecCCCCcEEEecC-CcchhhcccccccceeEEEEE-
Confidence 9999999999999866532 224668999999999999 7999999999999995 566666676644 45889988
Q ss_pred ccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCC
Q 001336 480 HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 559 (1097)
Q Consensus 480 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 559 (1097)
..||.++++.+.|..|++++.++...+.. .....+|++++.|.+++++++.-. +..+++||++..++++++.||
T Consensus 363 -t~Dgk~vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL~----~qei~LWDl~e~~lv~kY~Gh 436 (519)
T KOG0293|consen 363 -TYDGKYVLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNLQ----DQEIHLWDLEENKLVRKYFGH 436 (519)
T ss_pred -cCCCcEEEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEcc----cCeeEEeecchhhHHHHhhcc
Confidence 66779999999999999999886555432 334568999999999999988765 346999999999999999999
Q ss_pred CCcc-eEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcC-CCCEEEEEECCCcEEEEEcCC
Q 001336 560 GKRS-VGVVQFDT-TKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGILLAVSTNDNGIKILANAD 636 (1097)
Q Consensus 560 ~~~~-v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~~dg~i~iw~~~~ 636 (1097)
..+. +-.-||.. +..++++|++|+.|+||+..+|+++.++.+| ...|+||+|+| +..++|++++||+||||....
T Consensus 437 kq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH--s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 437 KQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH--SKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCC--cceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 7633 22335544 4489999999999999999999999999977 77999999999 668999999999999998653
No 2
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-57 Score=484.97 Aligned_cols=576 Identities=18% Similarity=0.237 Sum_probs=482.7
Q ss_pred EEEccCCCeEEEEEeCCCeEEEEEcCCCcee-eeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCC
Q 001336 325 MDFHPVQQILLVVGTNMGDVMLWEVGSRERI-AVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 403 (1097)
Q Consensus 325 v~fspdg~~lla~gs~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg 403 (1097)
++|+++|+.| ++... ..|.+-|+.++... .. ...+....+++++.+||+++|+++++.+
T Consensus 25 ~~~s~nG~~L-~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQHL-YTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCCEE-EEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 8999999954 55544 35888999998763 21 1345677899999999999999999999
Q ss_pred EEEEEEccCCeeeeeeeeeec-ccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccC
Q 001336 404 IVHLYTYHGGDELRNHLEIEA-HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE 482 (1097)
Q Consensus 404 ~i~iwd~~~~~~~~~~~~l~~-h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 482 (1097)
-+++|++.+++.++ .+.. |.+||.-++|+|.+. ++++|+.|+.+++||+..+.+.+.|+||.+.|.++.|++..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998766 4665 999999999999997 89999999999999999999999999999999999999998
Q ss_pred CccEEEEEcCCCeEEEEEcCCCCc-eeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCC
Q 001336 483 NIQFIFSTATDGKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK 561 (1097)
Q Consensus 483 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 561 (1097)
+...|++|+.|+++++||+..... ...+..|...|++++|++|+..+++++.|+ .+.+||+.+.+..++++..+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDk----vi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDK----VIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCc----EEEEeehhhhhhhheechhh-
Confidence 888899999999999999995554 677788889999999999999999998754 79999998877777776654
Q ss_pred cceEEEEEcCC-----CCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001336 562 RSVGVVQFDTT-----KNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 636 (1097)
Q Consensus 562 ~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~ 636 (1097)
.+.++.+.++ +.++++.|++|.+++||.++++++....... ...+..+...+....++..+.|..+.++|.++
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEccc
Confidence 5667777776 6799999999999999999999887765432 22356666666566677778888999999988
Q ss_pred CceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCccccccccccccc
Q 001336 637 GIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRI 716 (1097)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 716 (1097)
. +..+.+.|...++..+ ..+ .+..+.++.+...+.+++
T Consensus 313 l-~i~k~ivG~ndEI~Dm-----------------------------------~~l------G~e~~~laVATNs~~lr~ 350 (775)
T KOG0319|consen 313 L-TIVKQIVGYNDEILDM-----------------------------------KFL------GPEESHLAVATNSPELRL 350 (775)
T ss_pred c-EEehhhcCCchhheee-----------------------------------eec------CCccceEEEEeCCCceEE
Confidence 8 7888888877776532 111 123567888888899999
Q ss_pred ccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccc
Q 001336 717 WKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILM 796 (1097)
Q Consensus 717 w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 796 (1097)
+++.+. .+..+ .+|...|.++....+|.+|++++.|.++++|.++.+ .+....
T Consensus 351 y~~~~~----~c~ii----~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~-------------------~~~~~~ 403 (775)
T KOG0319|consen 351 YTLPTS----YCQII----PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN-------------------CSKSLC 403 (775)
T ss_pred EecCCC----ceEEE----eCchhheeeeeecccCcEEEEecCCceEEEEEecCC-------------------cchhhh
Confidence 977643 23322 469999999998888999999999999999987422 111111
Q ss_pred cccCCCCCCCCCeeEEEEccCC-CEEEEEe-CCeEEEEEcCCCc---------eeEEeCCCCCCeEEEEEeCCCCCEEEE
Q 001336 797 TNDISDTNPEDAVPCFALSKND-SYVMSAS-GGKISLFNMMTFK---------TMTTFMPPPPAATFLAFHPQDNNIIAI 865 (1097)
Q Consensus 797 ~~~~~~~~h~~~v~~l~~s~dg-~~la~~s-dg~i~iwd~~~~~---------~~~~~~~~~~~i~~l~~sp~~~~~la~ 865 (1097)
..... +|...|.+++++..+ .++++++ |.++++|++...+ +..+...|+..|+|++++| +.+++|+
T Consensus 404 ~a~~~--gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT 480 (775)
T KOG0319|consen 404 VAQAN--GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIAT 480 (775)
T ss_pred hhhhc--ccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEe
Confidence 11223 499999999998755 5788888 9999999996521 1123456999999999999 8999999
Q ss_pred EECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeE
Q 001336 866 GMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTR 945 (1097)
Q Consensus 866 g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 945 (1097)
|+.|++.+||++..++...++.||...|+++.|++..+.++|+|.|++|+||.+++.. +++..+||. ..|..
T Consensus 481 ~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS-----ClkT~eGH~---~aVlr 552 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS-----CLKTFEGHT---SAVLR 552 (775)
T ss_pred cccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce-----eeeeecCcc---ceeEe
Confidence 9999999999999999999999999999999999999999999999999999999954 788889888 68999
Q ss_pred EEEcCCCcEEEE-EeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCC
Q 001336 946 VQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1014 (1097)
Q Consensus 946 l~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~ 1014 (1097)
+.|-.+|+.|++ +.||-+++|++.+++|+..+. .|...|++++.++++.+++||+.||.|.+|.-.+
T Consensus 553 a~F~~~~~qliS~~adGliKlWnikt~eC~~tlD--~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 553 ASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD--AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred eeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh--hccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 999999999998 699999999999999999987 8999999999999999999999999999997555
No 3
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-51 Score=441.75 Aligned_cols=551 Identities=17% Similarity=0.267 Sum_probs=443.8
Q ss_pred EEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccC
Q 001336 313 VMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 392 (1097)
Q Consensus 313 ~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 392 (1097)
...+.+...|++++.||+|..| ++....|...+-++.....++..+| ...|.|+.||||
T Consensus 49 Tl~~e~~~NI~~ialSp~g~ll-lavdE~g~~~lvs~~~r~Vlh~f~f--------------------k~~v~~i~fSPn 107 (893)
T KOG0291|consen 49 TLPLETRYNITRIALSPDGTLL-LAVDERGRALLVSLLSRSVLHRFNF--------------------KRGVGAIKFSPN 107 (893)
T ss_pred eEEeecCCceEEEEeCCCceEE-EEEcCCCcEEEEecccceeeEEEee--------------------cCccceEEECCC
Confidence 3444588999999999999854 5667889999999988887775444 368999999999
Q ss_pred CCEEEEEECCCEEEEEEccCCee-----eeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCce--eEE
Q 001336 393 GTLFGVAYSKHIVHLYTYHGGDE-----LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK--QYI 465 (1097)
Q Consensus 393 ~~~las~~~dg~i~iwd~~~~~~-----~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~--~~~ 465 (1097)
|+++|+|..+ .+.||....... .....++.+|...|+++.|+.|.+ +|++|+.|.++++|+++..+. .+.
T Consensus 108 g~~fav~~gn-~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~ 184 (893)
T KOG0291|consen 108 GKFFAVGCGN-LLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYA 184 (893)
T ss_pred CcEEEEEecc-eeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEe
Confidence 9999988654 589998764322 233446789999999999999999 899999999999999987665 667
Q ss_pred eecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCC-----------------------CCc-----------eeeec
Q 001336 466 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN-----------------------LGS-----------RVDYD 511 (1097)
Q Consensus 466 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----------------------~~~-----------~~~~~ 511 (1097)
+.+|.+.|.++-| ..+...+++.+.||.+.+|..+. ++. +..+.
T Consensus 185 l~gHkd~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln 262 (893)
T KOG0291|consen 185 LNGHKDYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLN 262 (893)
T ss_pred ccCCCcceEEEEe--ccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeec
Confidence 8999999988877 45557899999999999997651 111 01112
Q ss_pred CCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 001336 512 APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDM 590 (1097)
Q Consensus 512 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~ 590 (1097)
.....+++.+|++..+.|+++-.++ .+.+|.+....+++.+.-... .|..+.|+..|.+|+.|+ .=|.+.||+.
T Consensus 263 ~~~~kvtaa~fH~~t~~lvvgFssG----~f~LyelP~f~lih~LSis~~-~I~t~~~N~tGDWiA~g~~klgQLlVweW 337 (893)
T KOG0291|consen 263 QNSSKVTAAAFHKGTNLLVVGFSSG----EFGLYELPDFNLIHSLSISDQ-KILTVSFNSTGDWIAFGCSKLGQLLVWEW 337 (893)
T ss_pred ccccceeeeeccCCceEEEEEecCC----eeEEEecCCceEEEEeecccc-eeeEEEecccCCEEEEcCCccceEEEEEe
Confidence 2235789999999999999987644 578999999999999887766 899999999999999998 4589999999
Q ss_pred CCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCccccccc
Q 001336 591 DNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGS 670 (1097)
Q Consensus 591 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1097)
.+...+...++| ...+++++++|||+++|+|++||.|+|||..++ -++.++
T Consensus 338 qsEsYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~vTF-------------------------- 388 (893)
T KOG0291|consen 338 QSESYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFVTF-------------------------- 388 (893)
T ss_pred eccceeeecccc--ccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEEEe--------------------------
Confidence 988777666654 889999999999999999999999999998776 111111
Q ss_pred CccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccC
Q 001336 671 ANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS 750 (1097)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 750 (1097)
T Consensus 389 -------------------------------------------------------------------------------- 388 (893)
T KOG0291|consen 389 -------------------------------------------------------------------------------- 388 (893)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeE
Q 001336 751 GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKI 829 (1097)
Q Consensus 751 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i 829 (1097)
. .|+..|+++.|+..|+.+++.+ ||+|
T Consensus 389 --------------------------------------------------t--eHts~Vt~v~f~~~g~~llssSLDGtV 416 (893)
T KOG0291|consen 389 --------------------------------------------------T--EHTSGVTAVQFTARGNVLLSSSLDGTV 416 (893)
T ss_pred --------------------------------------------------c--cCCCceEEEEEEecCCEEEEeecCCeE
Confidence 1 1889999999999999999999 9999
Q ss_pred EEEEcCCCceeEEeCCCC-CCeEEEEEeCCCCCEEEEEECCC-cEEEEEcccceEEEEecccccCeEEEEEecCCCEEEE
Q 001336 830 SLFNMMTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIGMEDS-SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVS 907 (1097)
Q Consensus 830 ~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~~la~g~~dg-~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s 907 (1097)
+.||+..++..+++..+. -...|++..| .|.++..|+.|. .|+||++.+|+++..+.||.++|.+++|+|++..|+|
T Consensus 417 RAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 417 RAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred EeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEe
Confidence 999999999999998654 3478899999 788999898886 7999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-EeCCeEEEEeCCCcceeeeeec-------
Q 001336 908 SGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVP------- 979 (1097)
Q Consensus 908 ~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~------- 979 (1097)
++.|.+|++||+-..... ...+.+. ..+..++|+|||+.|++ +.||+|.+||.+.+.....+..
T Consensus 496 ~SWDkTVRiW~if~s~~~-vEtl~i~-------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~g 567 (893)
T KOG0291|consen 496 GSWDKTVRIWDIFSSSGT-VETLEIR-------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGG 567 (893)
T ss_pred ccccceEEEEEeeccCce-eeeEeec-------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccc
Confidence 999999999998764211 2223332 34889999999999999 5899999999987765533321
Q ss_pred -----------cCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcC---------------------
Q 001336 980 -----------REASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYL--------------------- 1027 (1097)
Q Consensus 980 -----------~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~--------------------- 1027 (1097)
.......+.+++|+||.++++|+..+.|++|++.++-++.++..+.++
T Consensus 568 R~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~ 647 (893)
T KOG0291|consen 568 RKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMD 647 (893)
T ss_pred ccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCcc
Confidence 112467899999999999999999999999999998877666533322
Q ss_pred -----------------CCC----CCC-----ceeeEEEEEcCCCCCEEEEEecCCcEEEEecCC
Q 001336 1028 -----------------PTN----PSL-----RVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1066 (1097)
Q Consensus 1028 -----------------~~~----h~~-----~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~ 1066 (1097)
|.. -++ .|....+.|+| .|.-++.+++.| |.+|.+.+
T Consensus 648 LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsP-tgraFAaatTEG-l~IYsld~ 710 (893)
T KOG0291|consen 648 LIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSP-TGRAFAAATTEG-LLIYSLDT 710 (893)
T ss_pred ccccccccccccccccCCccccCCccccccCceEEEEEEEECC-CcCeeeeecccc-eEEEecCC
Confidence 000 000 24444779999 689999999987 56676643
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.9e-54 Score=459.01 Aligned_cols=576 Identities=14% Similarity=0.226 Sum_probs=464.4
Q ss_pred eeeCCCCCCcceeecCCC------CceEEEEee---cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeee
Q 001336 291 VAYTPQSLGQSSYSTDDL------PKTVVMTLN---QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFK 361 (1097)
Q Consensus 291 ~~~s~~~~~~~~~~~~~~------~~~~~~~~~---h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~ 361 (1097)
++|+++|+.+++...+.. +........ ....|++++.+||+.+ |++.+..+.+++|++.+++.+..
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~-L~~a~rs~llrv~~L~tgk~irs---- 99 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEV-LVTASRSQLLRVWSLPTGKLIRS---- 99 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccE-EEEeeccceEEEEEcccchHhHh----
Confidence 458888888777755532 222212222 5678999999999985 57889999999999999987654
Q ss_pred EeeccccCccccccccCC-CCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCc
Q 001336 362 VWELGACSMPLQASLSSD-YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQ 440 (1097)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~-h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~ 440 (1097)
.+. |+++|.-++|+|.|..||+|+.|+.|+|||+..+.+.. .|.||.+.|.++.|.|+-.+
T Consensus 100 ---------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~ 161 (775)
T KOG0319|consen 100 ---------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNR 161 (775)
T ss_pred ---------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccch
Confidence 333 99999999999999999999999999999999988766 59999999999999999886
Q ss_pred EEEEEEeCCCcEEEEECCCCc-eeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEE
Q 001336 441 LSVVTCGEDRVIKVWDAVTGT-KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM 519 (1097)
Q Consensus 441 ~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 519 (1097)
.+|++|..|+++++||+.++. ++.++..|...|++++|. +|+..+++++.|..+.+||+...+....... ...+.+
T Consensus 162 ~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~--~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~-ye~~E~ 238 (775)
T KOG0319|consen 162 WLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFS--EDSLELLSVGRDKVIIVWDLVQYKKLKTLPL-YESLES 238 (775)
T ss_pred hheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeec--cCCceEEEeccCcEEEEeehhhhhhhheech-hhheee
Confidence 678999999999999999554 588899999999999994 5568999999999999999965444444332 235666
Q ss_pred EEEccC-----CCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001336 520 MAYSAD-----GARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN 594 (1097)
Q Consensus 520 ~~~s~~-----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 594 (1097)
+.+-++ +.++++.|. ++.+++||.+++++..+........+..+...+....+++...|..+.++|.++.+
T Consensus 239 vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~ 314 (775)
T KOG0319|consen 239 VVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT 314 (775)
T ss_pred EEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence 777666 668888875 44799999999987766554433346666666666778888889999999999999
Q ss_pred eEEEEecCCCCCCcceEEEc-CCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCcc
Q 001336 595 LLASIDADGGLQASPCIRFN-KEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANA 673 (1097)
Q Consensus 595 ~~~~~~~~~~~~~v~~v~~s-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1097)
+...+-+. ...|..+.|- |+.+++|++++.+.+|+|+..+. ..+.+.+|+..+....
T Consensus 315 i~k~ivG~--ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~--~c~ii~GH~e~vlSL~------------------ 372 (775)
T KOG0319|consen 315 IVKQIVGY--NDEILDMKFLGPEESHLAVATNSPELRLYTLPTS--YCQIIPGHTEAVLSLD------------------ 372 (775)
T ss_pred EehhhcCC--chhheeeeecCCccceEEEEeCCCceEEEecCCC--ceEEEeCchhheeeee------------------
Confidence 98888754 6788888874 57799999999999999988775 3347888887655331
Q ss_pred ccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCC-c
Q 001336 674 NVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSG-L 752 (1097)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg-~ 752 (1097)
....+..+++++.|+++++|.++....... ......+|.+.|.+++++..+ .
T Consensus 373 ------------------------~~~~g~llat~sKD~svilWr~~~~~~~~~---~~a~~~gH~~svgava~~~~~as 425 (775)
T KOG0319|consen 373 ------------------------VWSSGDLLATGSKDKSVILWRLNNNCSKSL---CVAQANGHTNSVGAVAGSKLGAS 425 (775)
T ss_pred ------------------------ecccCcEEEEecCCceEEEEEecCCcchhh---hhhhhcccccccceeeecccCcc
Confidence 112255789999999999999843222111 122236799999999997654 5
Q ss_pred eeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEE
Q 001336 753 AILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISL 831 (1097)
Q Consensus 753 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~i 831 (1097)
++++++.|.++++|++...+.... ............|...|.+++++|+.+++|+|+ |.+.+|
T Consensus 426 ffvsvS~D~tlK~W~l~~s~~~~~----------------~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi 489 (775)
T KOG0319|consen 426 FFVSVSQDCTLKLWDLPKSKETAF----------------PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI 489 (775)
T ss_pred EEEEecCCceEEEecCCCcccccc----------------cceehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence 788999999999999885211000 000000011124999999999999999999999 999999
Q ss_pred EEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCC
Q 001336 832 FNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGAD 911 (1097)
Q Consensus 832 wd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~D 911 (1097)
|+++.++...++.+|...|.|+.|+| ..+++|+++.|++|+||.+.+..|++++.||...|..+.|-.+|+.|+|++.|
T Consensus 490 W~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad 568 (775)
T KOG0319|consen 490 WDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD 568 (775)
T ss_pred ecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCC
Confidence 99999999999999999999999999 88999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-EeCCeEEEEeCCC
Q 001336 912 SQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPK 970 (1097)
Q Consensus 912 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~~d~~v~vwd~~~ 970 (1097)
|.|++|++++++ +......|. +.|.+++.++...++++ +.|+.|.+|.=.+
T Consensus 569 GliKlWnikt~e-----C~~tlD~H~---DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 569 GLIKLWNIKTNE-----CEMTLDAHN---DRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred CcEEEEeccchh-----hhhhhhhcc---ceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 999999999977 445556665 67999999999999888 5899999996544
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4e-50 Score=413.72 Aligned_cols=568 Identities=14% Similarity=0.175 Sum_probs=439.3
Q ss_pred EEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCC
Q 001336 324 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 403 (1097)
Q Consensus 324 ~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg 403 (1097)
-+.-.|.|..++.+. ...|.+-+++...... ++.+|...++-..|||.|.|+|+|...|
T Consensus 23 ~ig~dpkgd~ilY~n--Gksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG 81 (603)
T KOG0318|consen 23 IIGGDPKGDNILYTN--GKSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSG 81 (603)
T ss_pred EeccCCCCCeEEEeC--CCEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcC
Confidence 344556677676653 3457777777665433 3789999999999999999999999999
Q ss_pred EEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeC--CC--cEEEEECCCCceeEEeecCCcCeEEEeec
Q 001336 404 IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE--DR--VIKVWDAVTGTKQYIFEGHESPVYSICPH 479 (1097)
Q Consensus 404 ~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~--d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 479 (1097)
+|+|||....+.+. ..+++.-.++|..++|+.|+++ |+..++ ++ .+.+|| +|..+.++.||...|+++.|-
T Consensus 82 ~vRIWdtt~~~hiL-Knef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~K 156 (603)
T KOG0318|consen 82 KVRIWDTTQKEHIL-KNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFK 156 (603)
T ss_pred cEEEEeccCcceee-eeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEec--CCCccceeeccceeEeeeecc
Confidence 99999998754332 2357778899999999999995 444433 33 455565 888999999999999999997
Q ss_pred ccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEec--
Q 001336 480 HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH-- 557 (1097)
Q Consensus 480 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-- 557 (1097)
+... -.+++|++|++|.+|+=...+....+..|...|.++.|+|||.++++++.|+ ++.+||-.+++.+..+.
T Consensus 157 psRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg----ki~iyDGktge~vg~l~~~ 231 (603)
T KOG0318|consen 157 PSRP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG----KIYIYDGKTGEKVGELEDS 231 (603)
T ss_pred CCCc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCc----cEEEEcCCCccEEEEecCC
Confidence 6654 5799999999999997655555666677778999999999999999998755 69999999999999998
Q ss_pred -CCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC--CCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001336 558 -GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG--LQASPCIRFNKEGILLAVSTNDNGIKILAN 634 (1097)
Q Consensus 558 -~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~ 634 (1097)
+|.+ .|.+++|+||+..+++++.|.+++|||+.+.+++.++..... ...+ .+-|. +..|++.+.+|+|.+++.
T Consensus 232 ~aHkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqv-G~lWq--kd~lItVSl~G~in~ln~ 307 (603)
T KOG0318|consen 232 DAHKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQV-GCLWQ--KDHLITVSLSGTINYLNP 307 (603)
T ss_pred CCccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEE-EEEEe--CCeEEEEEcCcEEEEecc
Confidence 6766 999999999999999999999999999999999999875432 1222 34454 568999999999999988
Q ss_pred CCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCccccccccccc
Q 001336 635 ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS 714 (1097)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 714 (1097)
.... .++.+
T Consensus 308 ~d~~-~~~~i---------------------------------------------------------------------- 316 (603)
T KOG0318|consen 308 SDPS-VLKVI---------------------------------------------------------------------- 316 (603)
T ss_pred cCCC-hhhee----------------------------------------------------------------------
Confidence 7662 33322
Q ss_pred ccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCc
Q 001336 715 RIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGI 794 (1097)
Q Consensus 715 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 794 (1097)
.+|...|++++.+||+++|++++.||.|.-|+... |.
T Consensus 317 ---------------------~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~----------------------g~ 353 (603)
T KOG0318|consen 317 ---------------------SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS----------------------GT 353 (603)
T ss_pred ---------------------cccccceeEEEEcCCCCEEEeeccCceEEEEecCC----------------------cc
Confidence 24888999999999999999999999999997553 22
Q ss_pred cccccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEcCCCceeEE--eCCCCCCeEEEEEeCCCCCEEEEEECCCcE
Q 001336 795 LMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTT--FMPPPPAATFLAFHPQDNNIIAIGMEDSSI 872 (1097)
Q Consensus 795 ~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~~~~~la~g~~dg~v 872 (1097)
.-. +.+.+|...|.+++.+..+.++.++-|+++++.++.....-.. ++ -.....+++..+ ++.+++..+.++.+
T Consensus 354 ~~~--~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~-lg~QP~~lav~~-d~~~avv~~~~~iv 429 (603)
T KOG0318|consen 354 SDR--LAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVK-LGSQPKGLAVLS-DGGTAVVACISDIV 429 (603)
T ss_pred ccc--cccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceee-cCCCceeEEEcC-CCCEEEEEecCcEE
Confidence 211 2233499999999999888888877799999998865433222 12 222334888888 67677777766544
Q ss_pred EEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCC
Q 001336 873 QIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQ 952 (1097)
Q Consensus 873 ~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 952 (1097)
.+=+... +..+. -.-...+++++|+++.++.|+.|+.|++|.+..++...... ...|. ++++.++||||+
T Consensus 430 ~l~~~~~---~~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~---~~~h~---a~iT~vaySpd~ 499 (603)
T KOG0318|consen 430 LLQDQTK---VSSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK---LLEHR---AAITDVAYSPDG 499 (603)
T ss_pred EEecCCc---ceeec-cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceee---eeccc---CCceEEEECCCC
Confidence 4433322 22222 22346789999999999999999999999999866432211 12222 679999999999
Q ss_pred cEEEEE-eCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCC
Q 001336 953 THLLAV-HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNP 1031 (1097)
Q Consensus 953 ~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h 1031 (1097)
.|||++ ..+.+.+||+++.+..... ..-|...|.+++|||+.+++|||+.|..|.||++......-.+. .+|
T Consensus 500 ~yla~~Da~rkvv~yd~~s~~~~~~~-w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik------nAH 572 (603)
T KOG0318|consen 500 AYLAAGDASRKVVLYDVASREVKTNR-WAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK------NAH 572 (603)
T ss_pred cEEEEeccCCcEEEEEcccCceecce-eeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec------ccc
Confidence 999997 6689999999988773322 22489999999999999999999999999999998765542222 257
Q ss_pred CCceeeEEEEEcCCCCCEEEEEecCCcEEEEecC
Q 001336 1032 SLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1065 (1097)
Q Consensus 1032 ~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~ 1065 (1097)
...|+.+.+. ++..+++.+.|..|++|.+.
T Consensus 573 ~~gVn~v~wl----de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 573 LGGVNSVAWL----DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ccCceeEEEe----cCceEEeccCcceeEEeccc
Confidence 8889988544 57899999999999999875
No 6
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.1e-54 Score=416.30 Aligned_cols=454 Identities=19% Similarity=0.297 Sum_probs=371.1
Q ss_pred ChhhhhhhcccChHHHHHHhccccccCCccccceeeehhhHhhhhHHHhcCChhHHHHHHHhc--cccccccChHHHHHH
Q 001336 1 MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKD--LKVFSAFNEDLFKEI 78 (1097)
Q Consensus 1 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~E~l~~~~~~~a~~~l~~~--l~~l~~~~~~~~~~l 78 (1097)
++.|-+.|-+|+||.+++.++.| .++.+ -+..||||..|||+|.++...|-.+||+. +.-|+..++++|.+|
T Consensus 44 vd~Fv~dI~sG~WD~VL~~vqsL-KLP~k-----kL~dLYEqivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~l 117 (508)
T KOG0275|consen 44 VDGFVNDINSGHWDTVLKTVQSL-KLPDK-----KLIDLYEQIVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRL 117 (508)
T ss_pred HHHHHHhcccCchHHHHHHHHhc-cCchh-----HHHHHHHHHHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHH
Confidence 35688999999999999999999 66655 36789999999999999999999999984 555778899999999
Q ss_pred HHhhccccccchhhhhccCCchHHHH-HHHHHHHhhcccCcCcccccCCCCCchhHHHHHHhhchhhhhhhcCCCCCCCC
Q 001336 79 TQLLTLENFRDNEQLSKYGDTKSARG-IMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLNWQHQLCKNPRANPD 157 (1097)
Q Consensus 79 ~~ll~~~~~~~~~~~~~~~~~~~~r~-~l~~~~~~~i~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~ 157 (1097)
..||..+.+++.+.+.+ ..++.|+ .+.+.|...+.- +||.||..||.||++||+++
T Consensus 118 E~ll~R~YFDp~EaY~d--ssKEkrRa~IAQ~ls~EV~V------------VppSRLlaLlGQaLKWQqHQ--------- 174 (508)
T KOG0275|consen 118 ENLLNRSYFDPREAYGD--SSKEKRRAVIAQALSGEVHV------------VPPSRLLALLGQALKWQQHQ--------- 174 (508)
T ss_pred HHHhcccccChhhhcCc--chHHHHHHHHHHHhcCceEE------------cChHHHHHHHHHHhhhHhhc---------
Confidence 99999999998888543 2555555 777777777766 99999999999999999984
Q ss_pred ccccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCccccc
Q 001336 158 IKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQPTPAALPTSLAGWMANPSPVPHPSPSAGPIALTA 237 (1097)
Q Consensus 158 ~~sl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1097)
+.+|.+..+| .|++..+.
T Consensus 175 ---------------------------GLLPPGt~iD------LFRGkAA~----------------------------- 192 (508)
T KOG0275|consen 175 ---------------------------GLLPPGTTID------LFRGKAAM----------------------------- 192 (508)
T ss_pred ---------------------------CCCCCCceee------eccchhhh-----------------------------
Confidence 4556455555 55555320
Q ss_pred ccchhhhhcCCCCCCCCCCcccccCcchhhhhhccCcCCCccccccccccccceeeCCCCCCcceeecCCCCceE--EEE
Q 001336 238 ANNAAAILKRPRTPPTNNSAMDYQTADSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTV--VMT 315 (1097)
Q Consensus 238 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~ 315 (1097)
+...|.. .|..+ ...
T Consensus 193 ------------------------K~~~Ee~---------------------------------------~Pt~l~r~IK 209 (508)
T KOG0275|consen 193 ------------------------KDQEEER---------------------------------------YPTQLARSIK 209 (508)
T ss_pred ------------------------hhhHhhh---------------------------------------chHHhhhhee
Confidence 0111110 00111 123
Q ss_pred eecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCE
Q 001336 316 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 395 (1097)
Q Consensus 316 ~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 395 (1097)
|+.++.+.|..|||||+|| ++|+.||.|.|||..+|+.....++.. +.-+.-+..+|.|+.||.|...
T Consensus 210 Fg~KSh~EcA~FSPDgqyL-vsgSvDGFiEVWny~~GKlrKDLkYQA-----------qd~fMMmd~aVlci~FSRDsEM 277 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYL-VSGSVDGFIEVWNYTTGKLRKDLKYQA-----------QDNFMMMDDAVLCISFSRDSEM 277 (508)
T ss_pred cccccchhheeeCCCCceE-eeccccceeeeehhccchhhhhhhhhh-----------hcceeecccceEEEeecccHHH
Confidence 4466788899999999975 899999999999999998765322221 1135678899999999999999
Q ss_pred EEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEE
Q 001336 396 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 475 (1097)
Q Consensus 396 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 475 (1097)
||+|+.||.|+||.+.+|.|++++ -..|...|+|+.||.|+. .+++++.|.++++.-+++|+++++|+||...|+.
T Consensus 278 lAsGsqDGkIKvWri~tG~ClRrF--drAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQCLRRF--DRAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE 353 (508)
T ss_pred hhccCcCCcEEEEEEecchHHHHh--hhhhccCeeEEEEccCcc--hhhcccccceEEEeccccchhHHHhcCccccccc
Confidence 999999999999999999998853 238999999999999999 6999999999999999999999999999999999
Q ss_pred EeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCC--CceEEEEEccCC-CEEEEeeeCCCCCceEEEEeCCCCee
Q 001336 476 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG--HSSTMMAYSADG-ARLFSCGTNKEGESYLVEWNESEGAV 552 (1097)
Q Consensus 476 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~ 552 (1097)
..| .++|..+++++.||+|++|+..+.++...+...+ .+|.++..-|.+ ..+++|.. .+++.+.++. |+.
T Consensus 354 a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr----sntv~imn~q-GQv 426 (508)
T KOG0275|consen 354 ATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR----SNTVYIMNMQ-GQV 426 (508)
T ss_pred eEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC----CCeEEEEecc-ceE
Confidence 988 6778999999999999999999999887776544 378888777754 45666643 4468888875 777
Q ss_pred eEEecCCC--CcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001336 553 KRTYHGLG--KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK 630 (1097)
Q Consensus 553 ~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~ 630 (1097)
++.+.... ++...+++.+|.|.++++.++|+.++.|...+|++..++..| ...+..++-+|..+.+|+-+.||.++
T Consensus 427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh--EkdvIGl~HHPHqNllAsYsEDgllK 504 (508)
T KOG0275|consen 427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH--EKDVIGLTHHPHQNLLASYSEDGLLK 504 (508)
T ss_pred EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc--cccccccccCcccchhhhhcccchhh
Confidence 88876542 335667889999999999999999999999999999999877 55788999999999999999999999
Q ss_pred EEE
Q 001336 631 ILA 633 (1097)
Q Consensus 631 iw~ 633 (1097)
+|.
T Consensus 505 LWk 507 (508)
T KOG0275|consen 505 LWK 507 (508)
T ss_pred hcC
Confidence 994
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-48 Score=400.23 Aligned_cols=553 Identities=15% Similarity=0.221 Sum_probs=432.7
Q ss_pred CCCCcceeecCCCCceEEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccc
Q 001336 296 QSLGQSSYSTDDLPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQA 374 (1097)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (1097)
.|+.+.+...+.... ...+. |...++-..|||.|-| +|+|...|+|+|||....+.+...+|
T Consensus 37 nGksv~ir~i~~~~~--~~iYtEH~~~vtVAkySPsG~y-iASGD~sG~vRIWdtt~~~hiLKnef-------------- 99 (603)
T KOG0318|consen 37 NGKSVIIRNIDNPAS--VDIYTEHAHQVTVAKYSPSGFY-IASGDVSGKVRIWDTTQKEHILKNEF-------------- 99 (603)
T ss_pred CCCEEEEEECCCccc--eeeeccccceeEEEEeCCCceE-EeecCCcCcEEEEeccCcceeeeeee--------------
Confidence 344455555555433 23333 8999999999999985 59999999999999987554433333
Q ss_pred cccCCCCCCeEEEEEccCCCEEEEEECC----CEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCC
Q 001336 375 SLSSDYTASVNRVMWSPDGTLFGVAYSK----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR 450 (1097)
Q Consensus 375 ~~~~~h~~~V~~v~~spd~~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~ 450 (1097)
..-.++|..++|++|+++|++.+.. |.+.+||- |..+. .+.||...|.+++|-|.... .++||+.|+
T Consensus 100 ---~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS--G~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn 170 (603)
T KOG0318|consen 100 ---QVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDS--GNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDN 170 (603)
T ss_pred ---eecccccccceeCCCCcEEEEEecCccceeEEEEecC--CCccc---eeeccceeEeeeeccCCCce-EEEeccCCC
Confidence 3356799999999999999887653 34555654 44344 58899999999999998876 899999999
Q ss_pred cEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeec---CCCCceEEEEEccCCC
Q 001336 451 VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD---APGHSSTMMAYSADGA 527 (1097)
Q Consensus 451 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~ 527 (1097)
+|.+++-.--+-..+++.|..-|+|+.| +|||.++++++.||+|.+||=.+++....+. .|.+.|.+++|+||+.
T Consensus 171 ~v~ffeGPPFKFk~s~r~HskFV~~VRy--sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~ 248 (603)
T KOG0318|consen 171 TVAFFEGPPFKFKSSFREHSKFVNCVRY--SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST 248 (603)
T ss_pred eEEEeeCCCeeeeecccccccceeeEEE--CCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc
Confidence 9999986666667788899999999999 5667999999999999999999999888887 7888999999999999
Q ss_pred EEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCC--cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCC
Q 001336 528 RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK--RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGL 605 (1097)
Q Consensus 528 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 605 (1097)
.+++++.|+ .+++||..+.++++++..... .....+-|- +..|++.+.+|.|.+++......+..+.+| .
T Consensus 249 ~~~T~SaDk----t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GH--n 320 (603)
T KOG0318|consen 249 QFLTVSADK----TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGH--N 320 (603)
T ss_pred eEEEecCCc----eEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheeccc--c
Confidence 999998755 699999999999999876543 122233443 679999999999999999999999999866 7
Q ss_pred CCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCcccccccccccccc
Q 001336 606 QASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAP 685 (1097)
Q Consensus 606 ~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1097)
..|++++.++++.+|++|+.||.|.-|+..++...
T Consensus 321 K~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~--------------------------------------------- 355 (603)
T KOG0318|consen 321 KSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD--------------------------------------------- 355 (603)
T ss_pred cceeEEEEcCCCCEEEeeccCceEEEEecCCcccc---------------------------------------------
Confidence 79999999999999999999999999998877210
Q ss_pred ccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEE
Q 001336 686 AAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKL 765 (1097)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~v 765 (1097)
.+...+|...|.+++-+..+. +++.+.|.++++
T Consensus 356 ----------------------------------------------~~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~ 388 (603)
T KOG0318|consen 356 ----------------------------------------------RLAGKGHTNQIKGMAASESGE-LFTIGWDDTLRV 388 (603)
T ss_pred ----------------------------------------------ccccccccceEEEEeecCCCc-EEEEecCCeEEE
Confidence 011124888899998887666 778888888988
Q ss_pred eccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEcCCCceeEEeCC
Q 001336 766 WKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMP 845 (1097)
Q Consensus 766 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~ 845 (1097)
.++...... ...... -.....+++..+|+.+++.+.++.|.+..-.+ .+.+..
T Consensus 389 ~~~~~~~~t-----------------~~~~~~-------lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~--~~~~~~- 441 (603)
T KOG0318|consen 389 ISLKDNGYT-----------------KSEVVK-------LGSQPKGLAVLSDGGTAVVACISDIVLLQDQT--KVSSIP- 441 (603)
T ss_pred EecccCccc-----------------ccceee-------cCCCceeEEEcCCCCEEEEEecCcEEEEecCC--cceeec-
Confidence 766532110 000011 22344589999998888888866666665222 222222
Q ss_pred CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceE--EEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc
Q 001336 846 PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV--KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 923 (1097)
Q Consensus 846 ~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~ 923 (1097)
..-...+++++| ++..+|+|+.|+.|+||.+..++. ...+..|.++|+.+++|||+.+||++...+.+.+||+.+.+
T Consensus 442 ~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 442 IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASRE 520 (603)
T ss_pred cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCc
Confidence 344678999999 999999999999999999987653 34566799999999999999999999999999999999976
Q ss_pred ccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-EeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEe
Q 001336 924 KQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAF 1002 (1097)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s 1002 (1097)
.... ... .|. ..|.+++|+|+..++|+ +-|..|.||+++.......+. ..|...|+.+.|- |...|++.+
T Consensus 521 ~~~~-~w~---FHt---akI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik-nAH~~gVn~v~wl-de~tvvSsG 591 (603)
T KOG0318|consen 521 VKTN-RWA---FHT---AKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK-NAHLGGVNSVAWL-DESTVVSSG 591 (603)
T ss_pred eecc-eee---eee---eeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec-cccccCceeEEEe-cCceEEecc
Confidence 4211 111 122 56999999999999999 589999999999765543333 4788889999998 456789999
Q ss_pred cCCeEEEEeCC
Q 001336 1003 EEGSVGVLTAS 1013 (1097)
Q Consensus 1003 ~Dg~v~vwd~~ 1013 (1097)
.|..|++|++.
T Consensus 592 ~Da~iK~W~v~ 602 (603)
T KOG0318|consen 592 QDANIKVWNVT 602 (603)
T ss_pred CcceeEEeccc
Confidence 99999999874
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-48 Score=419.54 Aligned_cols=580 Identities=16% Similarity=0.230 Sum_probs=444.6
Q ss_pred cccceeeCCCCCCcceeecCCC-------CceEEEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeee
Q 001336 287 NILPVAYTPQSLGQSSYSTDDL-------PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKS 359 (1097)
Q Consensus 287 ~~~~~~~s~~~~~~~~~~~~~~-------~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~ 359 (1097)
+|.+++.||+|..+...+..+. ....++.+..+.+|.|+.|||||+.+ |+| ..+.+.||.......-.
T Consensus 57 NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~f-av~-~gn~lqiw~~P~~~~~~--- 131 (893)
T KOG0291|consen 57 NITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGKFF-AVG-CGNLLQIWHAPGEIKNE--- 131 (893)
T ss_pred ceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCcEE-EEE-ecceeEEEecCcchhcc---
Confidence 4668899999998776655532 45567777889999999999999954 443 44679999875432210
Q ss_pred eeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCC
Q 001336 360 FKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439 (1097)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~ 439 (1097)
+ .+-.....+.+|-..|+++.||.|.++|++|+.|-+++||.++..+.+. ...+.+|.+.|.++-|..+..
T Consensus 132 ~--------~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~-~~~l~gHkd~VvacfF~~~~~ 202 (893)
T KOG0291|consen 132 F--------NPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF-TYALNGHKDYVVACFFGANSL 202 (893)
T ss_pred c--------CcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccc-eEeccCCCcceEEEEeccCcc
Confidence 1 0111223478999999999999999999999999999999998776543 335889999999999999888
Q ss_pred cEEEEEEeCCCcEEEEECCC-----------------------Cce-----e------EEeecCCcCeEEEeecccCCcc
Q 001336 440 QLSVVTCGEDRVIKVWDAVT-----------------------GTK-----Q------YIFEGHESPVYSICPHHKENIQ 485 (1097)
Q Consensus 440 ~~~l~s~s~d~~i~iwd~~~-----------------------~~~-----~------~~~~~h~~~v~~~~~~~~~~~~ 485 (1097)
-++|.+.||.+.+|.... ++. . +-+......|++.+|++.. .
T Consensus 203 --~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t--~ 278 (893)
T KOG0291|consen 203 --DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT--N 278 (893)
T ss_pred --eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc--e
Confidence 799999999999998651 111 0 1122233678888886655 7
Q ss_pred EEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceE
Q 001336 486 FIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVG 565 (1097)
Q Consensus 486 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~ 565 (1097)
.|++|-..|...+|++........+.....+|..++|+..|..|+.++. +-+++.+|+.++...+.+.++|.. .+.
T Consensus 279 ~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsYVlKQQgH~~-~i~ 354 (893)
T KOG0291|consen 279 LLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESYVLKQQGHSD-RIT 354 (893)
T ss_pred EEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccceeeecccccc-cee
Confidence 8999999999999999999999888888899999999999999999974 356899999999999999999987 899
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEec
Q 001336 566 VVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVE 645 (1097)
Q Consensus 566 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 645 (1097)
+++++|||.++++|++||+|+|||..+|-++.++..| ...|+.+.|+..|+.+++.+-||+||.||+... +..+++.
T Consensus 355 ~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteH--ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTft 431 (893)
T KOG0291|consen 355 SLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEH--TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTFT 431 (893)
T ss_pred eEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccC--CCceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeeeec
Confidence 9999999999999999999999999999999999966 789999999999999999999999999999876 4555443
Q ss_pred ccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCC
Q 001336 646 SRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEP 725 (1097)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~ 725 (1097)
.+
T Consensus 432 ~P------------------------------------------------------------------------------ 433 (893)
T KOG0291|consen 432 SP------------------------------------------------------------------------------ 433 (893)
T ss_pred CC------------------------------------------------------------------------------
Confidence 21
Q ss_pred ceeeEeccCCCcCccceEEEEEccCCceeeeeccCc-EEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCC
Q 001336 726 SQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNA-VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTN 804 (1097)
Q Consensus 726 ~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 804 (1097)
......+++..|.|..+++|+.|. .|. +|++++|+++.. +.|
T Consensus 434 ------------~p~QfscvavD~sGelV~AG~~d~F~If----------------------vWS~qTGqllDi-LsG-- 476 (893)
T KOG0291|consen 434 ------------EPIQFSCVAVDPSGELVCAGAQDSFEIF----------------------VWSVQTGQLLDI-LSG-- 476 (893)
T ss_pred ------------CceeeeEEEEcCCCCEEEeeccceEEEE----------------------EEEeecCeeeeh-hcC--
Confidence 123457889999999999888873 344 556777877765 555
Q ss_pred CCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCC-ceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceE
Q 001336 805 PEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTF-KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV 882 (1097)
Q Consensus 805 h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~ 882 (1097)
|+++|.+++|+|+|..|++++ |.+|++||+-.. ..+.++. +...+..++|+| +|+-||+++-||.|.+||...+..
T Consensus 477 HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~~~q 554 (893)
T KOG0291|consen 477 HEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRP-DGKELAVATLDGQITFFDIKEAVQ 554 (893)
T ss_pred CCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcC-CCCeEEEEEecceEEEEEhhhcee
Confidence 999999999999999999999 999999998654 3445554 778899999999 999999999999999999987655
Q ss_pred EEEecc--------------------cccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCC--c
Q 001336 883 KTKLKG--------------------HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTAS--A 940 (1097)
Q Consensus 883 ~~~l~~--------------------h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~ 940 (1097)
+..+.+ ....++.+++|+||.++++||....|++|++..+-..+ .+++...+.-. .
T Consensus 555 ~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk--kfqiS~N~sLdg~~ 632 (893)
T KOG0291|consen 555 VGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK--KFQISDNRSLDGVL 632 (893)
T ss_pred eccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee--eEEeccccchhHHH
Confidence 433321 23568999999999999999999999999998865333 22222222110 0
Q ss_pred cCCeEEEEcCCCcEEEEE-----eCCeEEE-------EeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEE
Q 001336 941 LADTRVQFHLDQTHLLAV-----HETQIAI-------YEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVG 1008 (1097)
Q Consensus 941 ~~v~~l~~s~dg~~l~~~-----~d~~v~v-------wd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~ 1008 (1097)
.-+..=.+.+-|.+-++- .++.|-+ +|+.+.+ + ...-.|.++.|||.|+-+|.++..| +.
T Consensus 633 efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr----~---rpeIrv~sv~fsPtgraFAaatTEG-l~ 704 (893)
T KOG0291|consen 633 EFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRR----F---RPEIRVTSVQFSPTGRAFAAATTEG-LL 704 (893)
T ss_pred HHhccccccccCCccccccccccccccccccCCccccCCccccc----c---CceEEEEEEEECCCcCeeeeecccc-eE
Confidence 111222233333322220 0111111 1111110 0 0133688999999999999999988 78
Q ss_pred EEeCCCCcee
Q 001336 1009 VLTASTLRLR 1018 (1097)
Q Consensus 1009 vwd~~~~~~~ 1018 (1097)
||.+.+.-+.
T Consensus 705 IYsld~~~~F 714 (893)
T KOG0291|consen 705 IYSLDTTILF 714 (893)
T ss_pred EEecCCceEE
Confidence 8998776554
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-48 Score=418.45 Aligned_cols=572 Identities=16% Similarity=0.226 Sum_probs=439.6
Q ss_pred CCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEE
Q 001336 330 VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYT 409 (1097)
Q Consensus 330 dg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd 409 (1097)
.|+++.+ +.--.|.+||+++|+..... ........|+|++-+||.-.||+|..||.|+||+
T Consensus 33 ~Gr~va~--~a~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~ 93 (888)
T KOG0306|consen 33 KGRAVAV--SALEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFS 93 (888)
T ss_pred CCcEEEE--eccccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEEEEecCceEEeec
Confidence 4775533 34456999999999543310 1223446999999999999999999999999999
Q ss_pred ccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEE
Q 001336 410 YHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFS 489 (1097)
Q Consensus 410 ~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 489 (1097)
..++.... ++.||...|+++.|...|. .|+|||.|+.|.+||+-...-+..++||.+.|+..-|. .+..++++
T Consensus 94 ~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~--~~~~~lvS 166 (888)
T KOG0306|consen 94 LESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL--NGDSFLVS 166 (888)
T ss_pred cCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc--CCCeEEEE
Confidence 99875433 5899999999999999999 89999999999999999988899999999999988774 33479999
Q ss_pred EcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC------------eeeEEec
Q 001336 490 TATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG------------AVKRTYH 557 (1097)
Q Consensus 490 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~------------~~~~~~~ 557 (1097)
.+.|+.|++||+++..+......+...+..+++.+ +.+++++.+. .+.+|++... +...++.
T Consensus 167 ~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~ds----e~~v~~L~~~~D~~~~~~~~s~~~~G~~~ 240 (888)
T KOG0306|consen 167 VSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDS----ELKVWELAFEDDEKETNRYISTKLRGTFI 240 (888)
T ss_pred eccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCC----ceEEEEeecccccccccccceeeccceee
Confidence 99999999999999999999999999999999987 6777776543 4899988211 1111222
Q ss_pred CCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE--------ecC------------------------CCC
Q 001336 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI--------DAD------------------------GGL 605 (1097)
Q Consensus 558 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~------------------------~~~ 605 (1097)
....+....+...++++++++-+.|..+.+|.+.+.+.+... ..+ ...
T Consensus 241 rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~ 320 (888)
T KOG0306|consen 241 RQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTS 320 (888)
T ss_pred eccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheech
Confidence 222223444566777889999999999999988654322110 000 001
Q ss_pred CCcceEEEcCCCC---EEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccc
Q 001336 606 QASPCIRFNKEGI---LLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGER 682 (1097)
Q Consensus 606 ~~v~~v~~s~~~~---~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1097)
..+.+++|.|.+. .++. -.++++..|.++...
T Consensus 321 ~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~-------------------------------------------- 355 (888)
T KOG0306|consen 321 AKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSG-------------------------------------------- 355 (888)
T ss_pred hheeEEEEEecCCcceeEEE-eecCceEEEEeccCC--------------------------------------------
Confidence 2234455544331 1222 333344444332210
Q ss_pred cccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcE
Q 001336 683 TAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAV 762 (1097)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~ 762 (1097)
...+...+.-.+...+|...|+++++|.|...+++++ ++.
T Consensus 356 ---------------------------------------~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~S 395 (888)
T KOG0306|consen 356 ---------------------------------------KTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GES 395 (888)
T ss_pred ---------------------------------------CCCccccccceeeeccchhheeEEEeecCceeeeecC-CCc
Confidence 0000011111122246999999999999988666665 457
Q ss_pred EEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeE
Q 001336 763 HKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMT 841 (1097)
Q Consensus 763 i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~ 841 (1097)
+++|+.. +.+.+.. + ..+.+.+..|-|.++++++|. .|.+.+||+.+...+.
T Consensus 396 ikiWn~~----------------------t~kciRT-i----~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E 448 (888)
T KOG0306|consen 396 IKIWNRD----------------------TLKCIRT-I----TCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVE 448 (888)
T ss_pred EEEEEcc----------------------CcceeEE-e----ccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhh
Confidence 8888543 4443332 2 235788999999999999999 8999999999999999
Q ss_pred EeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEccc-----ceEEEEec-------ccccCeEEEEEecCCCEEEEEe
Q 001336 842 TFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-----DEVKTKLK-------GHQKRITGLAFSNTLNVLVSSG 909 (1097)
Q Consensus 842 ~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~-----~~~~~~l~-------~h~~~V~~l~~s~dg~~l~s~~ 909 (1097)
+++.|.+.|..++.+| |++.+++|+.|.+|++||..- |...+.+. .-...|.++.+||||++||.+=
T Consensus 449 ti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL 527 (888)
T KOG0306|consen 449 TIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL 527 (888)
T ss_pred hhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe
Confidence 9999999999999999 999999999999999999742 21111111 1346799999999999999999
Q ss_pred CCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-EeCCeEEEEeCCCcceeeeeeccCCCCCEEE
Q 001336 910 ADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITH 988 (1097)
Q Consensus 910 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~ 988 (1097)
-|.+++||-+++- +......||. -+|.++..|||++++++ +.|.+|+||-++-|.|-+.+. +|...|.+
T Consensus 528 LdnTVkVyflDtl-----KFflsLYGHk---LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f--AHdDSvm~ 597 (888)
T KOG0306|consen 528 LDNTVKVYFLDTL-----KFFLSLYGHK---LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF--AHDDSVMS 597 (888)
T ss_pred ccCeEEEEEecce-----eeeeeecccc---cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh--cccCceeE
Confidence 9999999999983 4566667777 58999999999999999 589999999999999999998 89999999
Q ss_pred EEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCC
Q 001336 989 ATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1066 (1097)
Q Consensus 989 v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~ 1066 (1097)
+.|-|+..++++++.|+.|+-||.+..+.+..+. +|...|+++ +.+| +|.+++++|.|.+|++|+-..
T Consensus 598 V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-------~H~~ev~cL--av~~-~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 598 VQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-------GHHSEVWCL--AVSP-NGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEEcccceeEEEecCcceEEeechhhhhhheeec-------cchheeeee--EEcC-CCCeEEeccCCceeEeeeccC
Confidence 9999999999999999999999999988887777 788999988 4557 799999999999999999875
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-48 Score=419.03 Aligned_cols=527 Identities=13% Similarity=0.218 Sum_probs=405.2
Q ss_pred CCCcceeecCCCCc-eEEEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCcccccc
Q 001336 297 SLGQSSYSTDDLPK-TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQAS 375 (1097)
Q Consensus 297 ~~~~~~~~~~~~~~-~~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (1097)
+..+..|+...... +.+........|+|+.-+||.- +||+|..||.|+||+..++....+
T Consensus 42 ~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t------------------ 102 (888)
T KOG0306|consen 42 LEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT------------------ 102 (888)
T ss_pred cccEeEEeeecchhhhhhhhhcccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee------------------
Confidence 34455555544311 1122223446899998888886 679999999999999998866553
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001336 376 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 455 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 455 (1097)
+.||..+|+++.|...|.+||+||.|+.|.+||+-...-.. .+.||...|+..-|..+.+ ++++.|.|+.|++|
T Consensus 103 -fngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~W 176 (888)
T KOG0306|consen 103 -FNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFW 176 (888)
T ss_pred -ecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEE
Confidence 78999999999999999999999999999999997654333 5899999999999998677 89999999999999
Q ss_pred ECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCce-------------eeecCCCCceEEEEE
Q 001336 456 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR-------------VDYDAPGHSSTMMAY 522 (1097)
Q Consensus 456 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~v~~~~~ 522 (1097)
|+++..|..+.-.|.+.|+.+++.. +.+++++.|+.+++|++...... .......+....++.
T Consensus 177 dL~tqhCf~Thvd~r~Eiw~l~~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~ 252 (888)
T KOG0306|consen 177 DLETQHCFETHVDHRGEIWALVLDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVT 252 (888)
T ss_pred ecccceeeeEEecccceEEEEEEec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEee
Confidence 9999999999999999999999854 58999999999999988211000 000000111122222
Q ss_pred ccCCCEEEEeeeCC------------------------------------------------------------------
Q 001336 523 SADGARLFSCGTNK------------------------------------------------------------------ 536 (1097)
Q Consensus 523 s~~~~~l~~~~~~~------------------------------------------------------------------ 536 (1097)
.++++++++-+.|+
T Consensus 253 d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~ 332 (888)
T KOG0306|consen 253 DFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSG 332 (888)
T ss_pred cCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecC
Confidence 33333333222000
Q ss_pred --------CCCceEEEEeCCCCeee---------EEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001336 537 --------EGESYLVEWNESEGAVK---------RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI 599 (1097)
Q Consensus 537 --------~~~~~i~~wd~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 599 (1097)
-.++.+..|.++..... ..+.||.. .|.+++++.+...+++| ..+.|++|+..+.+++.++
T Consensus 333 ~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~-dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi 410 (888)
T KOG0306|consen 333 GTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRS-DVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTI 410 (888)
T ss_pred CcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchh-heeEEEeecCceeeeec-CCCcEEEEEccCcceeEEe
Confidence 01234566655441111 34566766 89999999886555554 4688999999999999999
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCcccccccc
Q 001336 600 DADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSL 679 (1097)
Q Consensus 600 ~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1097)
.. ..+.+..|-|.++++++|...|.+.+||+.+. ..+...
T Consensus 411 ~~----~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-~l~Eti----------------------------------- 450 (888)
T KOG0306|consen 411 TC----GYILASKFVPGDRYIVLGTKNGELQVFDLASA-SLVETI----------------------------------- 450 (888)
T ss_pred cc----ccEEEEEecCCCceEEEeccCCceEEEEeehh-hhhhhh-----------------------------------
Confidence 74 26789999999999999999999999998765 222111
Q ss_pred ccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeecc
Q 001336 680 GERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS 759 (1097)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 759 (1097)
..|.+.|.+++.+||++.+++++.
T Consensus 451 --------------------------------------------------------~AHdgaIWsi~~~pD~~g~vT~sa 474 (888)
T KOG0306|consen 451 --------------------------------------------------------RAHDGAIWSISLSPDNKGFVTGSA 474 (888)
T ss_pred --------------------------------------------------------hccccceeeeeecCCCCceEEecC
Confidence 138889999999999999999999
Q ss_pred CcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCc
Q 001336 760 NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK 838 (1097)
Q Consensus 760 dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~ 838 (1097)
|.+|++|++.-... ..|. +-++-.+...+.+. -...|.|+.+||||++||++- |++++||-+++.+
T Consensus 475 DktVkfWdf~l~~~-~~gt-----~~k~lsl~~~rtLe-------l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK 541 (888)
T KOG0306|consen 475 DKTVKFWDFKLVVS-VPGT-----QKKVLSLKHTRTLE-------LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK 541 (888)
T ss_pred CcEEEEEeEEEEec-cCcc-----cceeeeeccceEEe-------ccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee
Confidence 99999998763211 0000 00111111111111 467899999999999999998 9999999999999
Q ss_pred eeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001336 839 TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918 (1097)
Q Consensus 839 ~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd 918 (1097)
....+.||.-+|.|+.+|| |++++++|+.|+.|+||-++-|.|.+.+-+|.+.|.++.|-|+...+.|+|.|+.|+-||
T Consensus 542 FflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 542 FFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred eeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeec
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEE
Q 001336 919 TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSI 998 (1097)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l 998 (1097)
-+.-+ .+..+. +|...|++++.+|+|.++
T Consensus 621 g~kFe-------------------------------------------------~iq~L~--~H~~ev~cLav~~~G~~v 649 (888)
T KOG0306|consen 621 GEKFE-------------------------------------------------EIQKLD--GHHSEVWCLAVSPNGSFV 649 (888)
T ss_pred hhhhh-------------------------------------------------hheeec--cchheeeeeEEcCCCCeE
Confidence 66522 222233 788999999999999999
Q ss_pred EEEecCCeEEEEeCCCC
Q 001336 999 YVAFEEGSVGVLTASTL 1015 (1097)
Q Consensus 999 ~s~s~Dg~v~vwd~~~~ 1015 (1097)
+++|.|.+|++|+-...
T Consensus 650 vs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 650 VSSSHDKSIRLWERTDE 666 (888)
T ss_pred EeccCCceeEeeeccCc
Confidence 99999999999986653
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.5e-50 Score=396.91 Aligned_cols=330 Identities=22% Similarity=0.345 Sum_probs=293.4
Q ss_pred EEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEc
Q 001336 312 VVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 390 (1097)
Q Consensus 312 ~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 390 (1097)
+...+. |.+.|.|++|+|+|++| |+|+.|.++++||+.+....++ .++|...|.|++||
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l-~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcvaws 166 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRL-VTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVAWS 166 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceE-EecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEEEC
Confidence 344444 99999999999999965 9999999999999999877664 78999999999999
Q ss_pred cCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEec-----CCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001336 391 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY-----PNKQLSVVTCGEDRVIKVWDAVTGTKQYI 465 (1097)
Q Consensus 391 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~-----d~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 465 (1097)
|||+.||+|+.||+|++||.++|+++.. .|.+|...|++++|-| ... +|++++.||+|+|||+..++++..
T Consensus 167 PDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~ 242 (480)
T KOG0271|consen 167 PDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRT 242 (480)
T ss_pred CCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEE
Confidence 9999999999999999999999987765 5899999999999976 445 799999999999999999999999
Q ss_pred eecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEc-----------cCCC-------
Q 001336 466 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYS-----------ADGA------- 527 (1097)
Q Consensus 466 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-----------~~~~------- 527 (1097)
+.+|+.+|+|++| .++ .+|++|+.|++|++|+...+.....+.+|.+.|+.++.+ |.++
T Consensus 243 lsgHT~~VTCvrw--GG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se 319 (480)
T KOG0271|consen 243 LSGHTASVTCVRW--GGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSE 319 (480)
T ss_pred eccCccceEEEEE--cCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHH
Confidence 9999999999998 444 599999999999999999888888999999999998876 3333
Q ss_pred ------------------EEEEeeeCCCCCceEEEEeCCCC-eeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001336 528 ------------------RLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFW 588 (1097)
Q Consensus 528 ------------------~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 588 (1097)
.|++++. +.++.+|+.... +++..+.+|.. .|+.+.|+||++++++++.|..|++|
T Consensus 320 ~~~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW 394 (480)
T KOG0271|consen 320 EQKKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLW 394 (480)
T ss_pred HHHHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeee
Confidence 4888875 447999997654 58889999987 99999999999999999999999999
Q ss_pred ECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCccccc
Q 001336 589 DMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTF 668 (1097)
Q Consensus 589 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1097)
+..+|+.+.++.+| ...|+.++|+.|.++|++|+.|.++++|++.+. ++...+
T Consensus 395 ~g~tGk~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DL------------------------ 447 (480)
T KOG0271|consen 395 DGRTGKFLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQDL------------------------ 447 (480)
T ss_pred eCCCcchhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeee-eecccC------------------------
Confidence 99999999999966 889999999999999999999999999998775 222111
Q ss_pred ccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEc
Q 001336 669 GSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYT 748 (1097)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 748 (1097)
.+|...|.++.|+
T Consensus 448 -------------------------------------------------------------------pGh~DEVf~vDws 460 (480)
T KOG0271|consen 448 -------------------------------------------------------------------PGHADEVFAVDWS 460 (480)
T ss_pred -------------------------------------------------------------------CCCCceEEEEEec
Confidence 2488899999999
Q ss_pred cCCceeeeeccCcEEEEec
Q 001336 749 NSGLAILALASNAVHKLWK 767 (1097)
Q Consensus 749 pdg~~l~~~~~dg~i~vw~ 767 (1097)
|||..+++++.|..+++|.
T Consensus 461 pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCCceeecCCCceEEEeec
Confidence 9999999999999999994
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-49 Score=393.85 Aligned_cols=367 Identities=20% Similarity=0.296 Sum_probs=297.4
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 456 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 456 (1097)
+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 68999999999999999999999999999999999976444 6889999999999999999 899999999999999
Q ss_pred CCCCcee-EEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeC
Q 001336 457 AVTGTKQ-YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 535 (1097)
Q Consensus 457 ~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 535 (1097)
.++|+++ ..+.+|...|++++|.|-. ..|..++|++++.|
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~skD 226 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSSKD 226 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceecccCC
Confidence 9999876 5889999999999985421 12344456665543
Q ss_pred CCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcC
Q 001336 536 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 615 (1097)
Q Consensus 536 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 615 (1097)
+ .+++||+..+.++..+.+|.. .|+|+.|..+| ++++|+.|++|++|+...|.+...+.+|.| .|+.++.+.
T Consensus 227 g----~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsT 298 (480)
T KOG0271|consen 227 G----SVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALST 298 (480)
T ss_pred C----CEEEEEccCceEEEEeccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccc
Confidence 3 367777777788888889987 99999998775 999999999999999999999999998854 899999886
Q ss_pred CCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCC
Q 001336 616 EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND 695 (1097)
Q Consensus 616 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1097)
+- .|-+|..|.+=+-. +... +....+....
T Consensus 299 dy-~LRtgaf~~t~~~~---------~~~s----e~~~~Al~rY------------------------------------ 328 (480)
T KOG0271|consen 299 DY-VLRTGAFDHTGRKP---------KSFS----EEQKKALERY------------------------------------ 328 (480)
T ss_pred hh-hhhccccccccccC---------CChH----HHHHHHHHHH------------------------------------
Confidence 52 33344333221110 0010 0000001100
Q ss_pred CCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCc
Q 001336 696 SRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNS 775 (1097)
Q Consensus 696 ~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~ 775 (1097)
+. ..-..+..|+++++|.++.+|+-.
T Consensus 329 ----------------------~~--------------------------~~~~~~erlVSgsDd~tlflW~p~------ 354 (480)
T KOG0271|consen 329 ----------------------EA--------------------------VLKDSGERLVSGSDDFTLFLWNPF------ 354 (480)
T ss_pred ----------------------HH--------------------------hhccCcceeEEecCCceEEEeccc------
Confidence 00 001134569999999999998533
Q ss_pred cCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEE
Q 001336 776 TGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLA 854 (1097)
Q Consensus 776 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 854 (1097)
++.+.+.. ..+ |..-|..+.||||++++|+++ |..|++|+..+|+.+.+|++|-+.|..++
T Consensus 355 ---------------~~kkpi~r-mtg--Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva 416 (480)
T KOG0271|consen 355 ---------------KSKKPITR-MTG--HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA 416 (480)
T ss_pred ---------------ccccchhh-hhc--hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence 22222222 333 999999999999999999999 99999999999999999999999999999
Q ss_pred EeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001336 855 FHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918 (1097)
Q Consensus 855 ~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd 918 (1097)
|+. |.++|++|+.|.++++|++.+.++...+.||.++|.++.|+|||..+++|+.|..+++|.
T Consensus 417 wsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 417 WSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999 999999999999999999999999999999999999999999999999999999999995
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=8.3e-44 Score=377.85 Aligned_cols=604 Identities=14% Similarity=0.182 Sum_probs=409.6
Q ss_pred EEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEE--C
Q 001336 324 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY--S 401 (1097)
Q Consensus 324 ~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~--~ 401 (1097)
.++.+|....+ |. -....|.+||.+...+-+ ++..|..+++|++||++|+|+|+|- .
T Consensus 42 gLa~~p~Sgl~-aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEcG~ 100 (1080)
T KOG1408|consen 42 GLASVPCSGLC-AY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGECGR 100 (1080)
T ss_pred cccccccccce-ee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEecccCC
Confidence 45555544422 21 223568899988765433 4677889999999999999999984 6
Q ss_pred CCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeC--CCcEEEEECCCCceeEEeecCCcCeEEEeec
Q 001336 402 KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE--DRVIKVWDAVTGTKQYIFEGHESPVYSICPH 479 (1097)
Q Consensus 402 dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 479 (1097)
...++||++.....+. ++..|...|+|++|+|.++ ++++.+. |-.|.+||++.......- .-...|..++|
T Consensus 101 ~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~f- 173 (1080)
T KOG1408|consen 101 TPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVAF- 173 (1080)
T ss_pred Cccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccccccc-ccceeEEEEEE-
Confidence 7789999998866444 5888999999999999999 7777664 667889988755433222 24556788888
Q ss_pred ccCCccEEEEEcCCCeEEEEEcCCCCceee---ecCCCCceEEEEE------------ccCCCEEEEeeeCCCCCceEEE
Q 001336 480 HKENIQFIFSTATDGKIKAWLYDNLGSRVD---YDAPGHSSTMMAY------------SADGARLFSCGTNKEGESYLVE 544 (1097)
Q Consensus 480 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~------------s~~~~~l~~~~~~~~~~~~i~~ 544 (1097)
+.+|.++++.+. ..|++|.++....... +.+...-.-.+.+ ..+..+.++. .+.+.-
T Consensus 174 -sEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhLvE 245 (1080)
T KOG1408|consen 174 -SEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHLVE 245 (1080)
T ss_pred -ccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccceee
Confidence 677789998874 8899999886552111 1111110001111 0111111111 111222
Q ss_pred EeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC----------------------
Q 001336 545 WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD---------------------- 602 (1097)
Q Consensus 545 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------- 602 (1097)
+ ...+++.++..-......|++.+ .++|++|+.+|.|++|+..+-....++.-.
T Consensus 246 F--SsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~ 321 (1080)
T KOG1408|consen 246 F--SSRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSP 321 (1080)
T ss_pred e--chhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCc
Confidence 2 22233322222222245566665 469999999999999998776554443210
Q ss_pred CCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccc
Q 001336 603 GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGER 682 (1097)
Q Consensus 603 ~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1097)
.......++.|++....+.+...|..++|||+.+-.+.-+....
T Consensus 322 a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~------------------------------------ 365 (1080)
T KOG1408|consen 322 AIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSM------------------------------------ 365 (1080)
T ss_pred ccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeee------------------------------------
Confidence 01112347889999999999999999999999765222111100
Q ss_pred cccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcE
Q 001336 683 TAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAV 762 (1097)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~ 762 (1097)
.-....+|++..... ..|...- +.-|.+- +++++.|++
T Consensus 366 ---------------------------lyHS~ciW~Ve~~p~-----------nv~~~~~---aclp~~c-F~TCSsD~T 403 (1080)
T KOG1408|consen 366 ---------------------------LYHSACIWDVENLPC-----------NVHSPTA---ACLPRGC-FTTCSSDGT 403 (1080)
T ss_pred ---------------------------eeccceeeeeccccc-----------cccCccc---ccCCccc-eeEecCCCc
Confidence 001233555543110 0011111 1112222 666677777
Q ss_pred EEEeccCCCCCCcc--Cccccc-----------------cCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEE
Q 001336 763 HKLWKWPRNERNST--GKATTN-----------------QAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMS 823 (1097)
Q Consensus 763 i~vw~~~~~~~~~~--~~~~~~-----------------~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~ 823 (1097)
|++|++.....+.. .+++.. ...-++|-..... ......+.++++||+|++||+
T Consensus 404 IRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~-------~d~r~G~R~~~vSp~gqhLAs 476 (1080)
T KOG1408|consen 404 IRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVST-------CDSRFGFRALAVSPDGQHLAS 476 (1080)
T ss_pred EEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhh-------cCcccceEEEEECCCcceecc
Confidence 77776664211000 000000 0011111111111 125678999999999999999
Q ss_pred Ee-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCC--CCCEEEEEECCCcEEEEEccc-ceEEEEecccccCeEEEEEe
Q 001336 824 AS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ--DNNIIAIGMEDSSIQIYNVRV-DEVKTKLKGHQKRITGLAFS 899 (1097)
Q Consensus 824 ~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~--~~~~la~g~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~s 899 (1097)
|. .|.++||++...+....+..|+.+|.|+.||.. ..++||+++.|+.|+|||+.. ..+++++.+|+..|+++.|.
T Consensus 477 GDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa 556 (1080)
T KOG1408|consen 477 GDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFA 556 (1080)
T ss_pred cCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEe
Confidence 99 899999999999999999999999999999853 357999999999999999874 46778999999999999999
Q ss_pred cCC--CEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCC-CCccCCeEEEEcCCCcEEEE-EeCCeEEEEeCCCcceee
Q 001336 900 NTL--NVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT-ASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLK 975 (1097)
Q Consensus 900 ~dg--~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~ 975 (1097)
-+| ..++++|.|+.|.+--..... .....+.++. .....+..++..|..+++++ +.|+.|+||++++++..+
T Consensus 557 ~~gln~~MiscGADksimFr~~qk~~----~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k 632 (1080)
T KOG1408|consen 557 CNGLNRKMISCGADKSIMFRVNQKAS----SGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK 632 (1080)
T ss_pred ecCCceEEEeccCchhhheehhcccc----CceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceee
Confidence 887 789999999977654332111 0111111111 11245788999999999999 699999999999999999
Q ss_pred eeec-cCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEe
Q 001336 976 QFVP-REASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGL 1054 (1097)
Q Consensus 976 ~~~~-~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~ 1054 (1097)
.|.. ++|.+....+...|.|-|||+.+.|+++.++|.-+|+++.++. ||+.-|+.+ .|.+ |-+.|++.+
T Consensus 633 ~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-------GHsE~VTG~--kF~n-DCkHlISvs 702 (1080)
T KOG1408|consen 633 SFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-------GHSEAVTGV--KFLN-DCKHLISVS 702 (1080)
T ss_pred eecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc-------Ccchheeee--eecc-cchhheeec
Confidence 9974 3567889999999999999999999999999999999998887 899999988 8888 689999999
Q ss_pred cCCcEEEEecCC
Q 001336 1055 TDGGVYIIEPLE 1066 (1097)
Q Consensus 1055 ~Dg~v~~W~~~~ 1066 (1097)
.||.|++|.++.
T Consensus 703 gDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 703 GDGCIFVWKLPL 714 (1080)
T ss_pred CCceEEEEECch
Confidence 999999999983
No 14
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.6e-38 Score=345.63 Aligned_cols=585 Identities=15% Similarity=0.170 Sum_probs=440.3
Q ss_pred EEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCCE
Q 001336 325 MDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHI 404 (1097)
Q Consensus 325 v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~ 404 (1097)
..|..-|+.++++.+.+.+..+||.+.-..+.. -..+...|+|++=..+ ++.+++.. .
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~g~-~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVASGN-K 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEecCc-E
Confidence 455555667888999999999999988777653 3467889999987554 44444333 3
Q ss_pred EEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC-cee----EEeecCCcCeEEEeec
Q 001336 405 VHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQ----YIFEGHESPVYSICPH 479 (1097)
Q Consensus 405 i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~-~~~----~~~~~h~~~v~~~~~~ 479 (1097)
|.+|. .|+.++. .+.+|.+.|.-+.-- |. .++++..++.+.||+..++ ..+ ..++...+.|+++. |
T Consensus 97 i~~~~--rgk~i~~--~~~~~~a~v~~l~~f--Ge--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYA--RGKHIRH--TTLLHGAKVHLLLPF--GE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEE--ccceEEE--EeccccceEEEEeee--cc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 55554 4544444 466788888776543 67 7999999999999998874 221 12232333388775 5
Q ss_pred ccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCC
Q 001336 480 HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 559 (1097)
Q Consensus 480 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 559 (1097)
|+.--+.++.|+.+|.+.+|++++++....+......|+++.-+|--..++.|..+| .|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G----~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENG----TVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCc----eEEEEEcccCcEEEEEEcc
Confidence 655456789999999999999999999999999999999999999999999987644 7999999999999999876
Q ss_pred CCcceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001336 560 GKRSVGVVQFDTTKNRFLA-AGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGI 638 (1097)
Q Consensus 560 ~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~ 638 (1097)
.+ .|+.++|..||+.+++ |+..|.+.+||++..+++..+.. .|.+.|....|-|....+++++.|+.+++|-.+++.
T Consensus 244 ~g-~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n-ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d 321 (910)
T KOG1539|consen 244 WG-RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN-AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD 321 (910)
T ss_pred cc-ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec-cccCCcccceecCCCceEeeccCCCceeEEEeeCCC
Confidence 44 9999999999976555 55779999999999988887763 236688999999999999999999999999766541
Q ss_pred eEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCccccccccccccccc
Q 001336 639 RLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWK 718 (1097)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~ 718 (1097)
-..+.+ .
T Consensus 322 g~pR~L-------------------------------------------------------------------------R 328 (910)
T KOG1539|consen 322 GVPRLL-------------------------------------------------------------------------R 328 (910)
T ss_pred Ccchhe-------------------------------------------------------------------------e
Confidence 111110 0
Q ss_pred ccccCCCceeeEeccCCCcCccceEEEEEc-cCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCcccc
Q 001336 719 LTEITEPSQCRSLRLPDNLTAMRVSRLIYT-NSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT 797 (1097)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-pdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 797 (1097)
...||..+..++.|- .+|..+++++.|++.+.+++....++..-.. ......++...
T Consensus 329 ---------------~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~~ 386 (910)
T KOG1539|consen 329 ---------------SRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKVN 386 (910)
T ss_pred ---------------eccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------ccccccccccc
Confidence 013588888899887 7899999999999999887765433211100 01111111111
Q ss_pred ccCCCCCCCCCeeEEEEccC-----CCEEEEEe-CCeEEEEEcCCCce-eEEeC-----CCCCCeEEEEEeCCCCCEEEE
Q 001336 798 NDISDTNPEDAVPCFALSKN-----DSYVMSAS-GGKISLFNMMTFKT-MTTFM-----PPPPAATFLAFHPQDNNIIAI 865 (1097)
Q Consensus 798 ~~~~~~~h~~~v~~l~~s~d-----g~~la~~s-dg~i~iwd~~~~~~-~~~~~-----~~~~~i~~l~~sp~~~~~la~ 865 (1097)
..-.....-.+|..+++... .+.+++.- +...+.|+...... ...+. .....+++++.++ .|++.+.
T Consensus 387 ~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~I 465 (910)
T KOG1539|consen 387 VFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFI 465 (910)
T ss_pred ccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEE
Confidence 00000002345666666532 22333333 56799999976554 23333 2346799999999 9999999
Q ss_pred EECCCcEEEEEcccceEEEEe---cccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccC
Q 001336 866 GMEDSSIQIYNVRVDEVKTKL---KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALA 942 (1097)
Q Consensus 866 g~~dg~v~vwd~~~~~~~~~l---~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1097)
|...|.|.+|++.+|-....+ ..|.++|++++...-++.+++++.+|.+++||.+...... .+.-+ ..
T Consensus 466 G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~----~l~l~-----~~ 536 (910)
T KOG1539|consen 466 GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK----SLRLG-----SS 536 (910)
T ss_pred eccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee----eeccC-----CC
Confidence 999999999999999888888 5899999999998888999999999999999998854111 11112 45
Q ss_pred CeEEEEcCCCcEEEE-EeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeee
Q 001336 943 DTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRI 1021 (1097)
Q Consensus 943 v~~l~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~ 1021 (1097)
+..+..+.....+++ ..|-.|.++|..+.+.++.+. ||...|++++|||||++|++++.|++|++||+.++.++..+
T Consensus 537 ~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~--gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 537 ITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW--GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred cceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh--ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 788888888888888 478899999999999999998 99999999999999999999999999999999999998766
Q ss_pred CCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecC-CcEEEEec
Q 001336 1022 NPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTD-GGVYIIEP 1064 (1097)
Q Consensus 1022 ~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~D-g~v~~W~~ 1064 (1097)
.... -+..++|+| +|++|+|...| ..|++|.=
T Consensus 615 ~vd~----------~~~sls~SP-ngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 615 LVDS----------PCTSLSFSP-NGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ecCC----------cceeeEECC-CCCEEEEEEecCceEEEEEc
Confidence 6222 245669999 79999999999 68999953
No 15
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.3e-39 Score=346.19 Aligned_cols=551 Identities=14% Similarity=0.150 Sum_probs=366.4
Q ss_pred cCCCeeEEEEccCCCeEEEEEe--CCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGT--NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 395 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 395 (1097)
+...++|++||++|+|+ |+|- ....++||++.....+.. +..|...|+|++|+|.++|
T Consensus 77 sRk~~t~vAfS~~Gryv-atGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGRYV-ATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCcEE-EecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence 67799999999999975 7775 456899999987765553 7789999999999999999
Q ss_pred EEEEEC--CCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE---------
Q 001336 396 FGVAYS--KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY--------- 464 (1097)
Q Consensus 396 las~~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~--------- 464 (1097)
+++.+. |-.|.+||++...... -..-...|.+++|+.||. |++|.+. ..|++|.++.++...
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeeee-eeEEEEEeeccccccCCccccchh
Confidence 998765 5567889887543222 223456799999999999 7888774 689999988665211
Q ss_pred ----Ee------------------------ecC-----------------CcCeEEEeecccCCccEEEEEcCCCeEEEE
Q 001336 465 ----IF------------------------EGH-----------------ESPVYSICPHHKENIQFIFSTATDGKIKAW 499 (1097)
Q Consensus 465 ----~~------------------------~~h-----------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 499 (1097)
.+ .|| +..-+||++ +. ++|++|+.+|.|++|
T Consensus 210 ~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV--s~--r~I~cgCa~g~vrlF 285 (1080)
T KOG1408|consen 210 YFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV--SS--RLIACGCAKGMVRLF 285 (1080)
T ss_pred hhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee--ec--ceEEEeeccceeeec
Confidence 00 011 111234444 22 689999999999999
Q ss_pred EcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCC---cceEEEEEcCCCCEE
Q 001336 500 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK---RSVGVVQFDTTKNRF 576 (1097)
Q Consensus 500 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l 576 (1097)
+..+......+..... -|.-++.+. +....+.+... .....+.|++....+
T Consensus 286 np~tL~y~~Tlpr~ha---------lg~d~a~~~-----------------q~~~~~s~~~~a~fPD~IA~~Fdet~~kl 339 (1080)
T KOG1408|consen 286 NPETLDYAGTLPRSHA---------LGSDTANLS-----------------QPEPKNSESSPAIFPDAIACQFDETTDKL 339 (1080)
T ss_pred Ccchhhhccccccccc---------cccchhhcc-----------------cccccccccCcccCCceeEEEecCCCceE
Confidence 8776544333321110 000000000 00000000000 123456777777788
Q ss_pred EEEeCCCcEEEEECCCCceEEEE-ecCCCCCCcceEEEcC-----------CCCEEEEEECCCcEEEEEcCCCceEEEEe
Q 001336 577 LAAGDEFMIKFWDMDNVNLLASI-DADGGLQASPCIRFNK-----------EGILLAVSTNDNGIKILANADGIRLLRTV 644 (1097)
Q Consensus 577 ~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~v~~s~-----------~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 644 (1097)
.+.-.|..++|||++.-+.+... ..--|...|+.+.--| -...+.+++.|++||+|++..+. --..+
T Consensus 340 scVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ct-nn~vy 418 (1080)
T KOG1408|consen 340 SCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCT-NNQVY 418 (1080)
T ss_pred EEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccc-cccee
Confidence 88888888888888764332221 1111233333333222 02358899999999999987641 11111
Q ss_pred cccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCccccccccccccc-ccccccC
Q 001336 645 ESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRI-WKLTEIT 723 (1097)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~-w~~~~~~ 723 (1097)
..+.... +. +-.-..|++..+ -|....
T Consensus 419 rRNils~--------------------------~l-------------------------~ki~y~d~~~q~~~d~~~~- 446 (1080)
T KOG1408|consen 419 RRNILSA--------------------------NL-------------------------SKIPYEDSTQQIMHDASAG- 446 (1080)
T ss_pred ecccchh--------------------------hh-------------------------hcCccccCchhhhhhccCC-
Confidence 1100000 00 000000011000 000000
Q ss_pred CCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCC
Q 001336 724 EPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDT 803 (1097)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 803 (1097)
...............+++++++|+|+.|++|..-|.++||++..-+. .. .+.
T Consensus 447 ---~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~---------------------~~--~~e-- 498 (1080)
T KOG1408|consen 447 ---IFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY---------------------TC--FME-- 498 (1080)
T ss_pred ---cccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh---------------------hh--hee--
Confidence 00000000112457799999999999999999999999998763211 01 122
Q ss_pred CCCCCeeEEEEcc---CCCEEEEEe-CCeEEEEEcCC-CceeEEeCCCCCCeEEEEEeCCCC--CEEEEEECCCcEEEEE
Q 001336 804 NPEDAVPCFALSK---NDSYVMSAS-GGKISLFNMMT-FKTMTTFMPPPPAATFLAFHPQDN--NIIAIGMEDSSIQIYN 876 (1097)
Q Consensus 804 ~h~~~v~~l~~s~---dg~~la~~s-dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~sp~~~--~~la~g~~dg~v~vwd 876 (1097)
.|+..|.|+.||. ..++||+++ |.-|.|||+.. ..++.++.+|...|+++.|.- .+ ..+++++.|+.|.+--
T Consensus 499 AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~~MiscGADksimFr~ 577 (1080)
T KOG1408|consen 499 AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRV 577 (1080)
T ss_pred cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-cCCceEEEeccCchhhheeh
Confidence 3999999999994 357999999 88899999964 567888999999999999987 44 6788888898776433
Q ss_pred cccceEEEEeccc-----ccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCC
Q 001336 877 VRVDEVKTKLKGH-----QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD 951 (1097)
Q Consensus 877 ~~~~~~~~~l~~h-----~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 951 (1097)
.........+..| ...+..+++.|..+++++++.|..|+|||+++++. .+...+...+.+....+...|.
T Consensus 578 ~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq-----~k~FKgs~~~eG~lIKv~lDPS 652 (1080)
T KOG1408|consen 578 NQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ-----VKSFKGSRDHEGDLIKVILDPS 652 (1080)
T ss_pred hccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce-----eeeecccccCCCceEEEEECCC
Confidence 2211111111111 24588999999999999999999999999999873 3333343333367788999999
Q ss_pred CcEEEEE-eCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCC
Q 001336 952 QTHLLAV-HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1014 (1097)
Q Consensus 952 g~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~ 1014 (1097)
|.||+++ .|.++.+||.-+|++++.+. ||+..|+.+.|++|.+.|++++.||.|.||.+..
T Consensus 653 giY~atScsdktl~~~Df~sgEcvA~m~--GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 653 GIYLATSCSDKTLCFVDFVSGECVAQMT--GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ccEEEEeecCCceEEEEeccchhhhhhc--CcchheeeeeecccchhheeecCCceEEEEECch
Confidence 9999994 99999999999999999998 9999999999999999999999999999999875
No 16
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.4e-42 Score=343.34 Aligned_cols=284 Identities=18% Similarity=0.245 Sum_probs=264.9
Q ss_pred eecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccC--C
Q 001336 316 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD--G 393 (1097)
Q Consensus 316 ~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd--~ 393 (1097)
++...+|..+.||+|++ ++|+||-+|.++||+..+...+.. +.||.+.|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCc
Confidence 44678999999999999 569999999999999999876653 8899999999999995 6
Q ss_pred CEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCe
Q 001336 394 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV 473 (1097)
Q Consensus 394 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v 473 (1097)
..||+|+.||++++|++.+...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+...+||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999876555 5899999999999999999 89999999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeee
Q 001336 474 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 553 (1097)
Q Consensus 474 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 553 (1097)
.+++| .+||.+++||+.|..-+|||++++.+...+.+|..+|.++.|+|+|..|++|+. +++++|||++....+
T Consensus 307 ~~iaf--~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAF--QPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEe--cCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence 99999 567799999999999999999999999999999999999999999999999986 447999999999999
Q ss_pred EEecCCCCcceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEE
Q 001336 554 RTYHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL 632 (1097)
Q Consensus 554 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw 632 (1097)
.++.+|.+ .|+.|+|+| .|.+|++++.|++++||...+..++.++.+| ...|.+++++++++.+++++.|+++++|
T Consensus 381 y~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH--e~kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 381 YTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH--EGKVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred eecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC--ccceEEEEeccCCceEEEeccCceeeec
Confidence 99999998 999999998 6789999999999999999999999999976 7789999999999999999999999999
Q ss_pred E
Q 001336 633 A 633 (1097)
Q Consensus 633 ~ 633 (1097)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 5
No 17
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.1e-37 Score=332.44 Aligned_cols=631 Identities=16% Similarity=0.198 Sum_probs=424.5
Q ss_pred cceeecCCCCceEEEEee-cCCCeeEEEEccCCC---eEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCcccccc
Q 001336 300 QSSYSTDDLPKTVVMTLN-QGSAVKSMDFHPVQQ---ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQAS 375 (1097)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~-h~~~V~~v~fspdg~---~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (1097)
+++++..+ .....++. |..+|+|+.|-|+.+ + +++|+.||.|++|.++....+....
T Consensus 36 Iav~dp~k--~~i~t~l~GH~a~VnC~~~l~~s~~~a~-~vsG~sD~~v~lW~l~~~~~~~i~~---------------- 96 (764)
T KOG1063|consen 36 IAVADPEK--ILIVTTLDGHVARVNCVHWLPTSEIVAE-MVSGDSDGRVILWKLRDEYLIKIYT---------------- 96 (764)
T ss_pred EEEeCccc--ceeEEeccCCccceEEEEEcccccccce-EEEccCCCcEEEEEEeehheEEEEe----------------
Confidence 44454443 34555555 999999999999877 4 4899999999999998544433211
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeee--eecccCcEEEEEEecCCCcEEEEEEeCCCcEE
Q 001336 376 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLE--IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 453 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~--l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 453 (1097)
+.+|. +.|++++..-....+...|+.+.+||.+..+ +..... +.--..--.|+++.++.+..+++.|+.+..|.
T Consensus 97 -~~g~~--~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~ 172 (764)
T KOG1063|consen 97 -IQGHC--KECVCVVARSSVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVD 172 (764)
T ss_pred -ecCcc--eeEEEEEeeeeEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEE
Confidence 44554 4555555444444444789999999995544 221111 22222234677778866655778888888888
Q ss_pred EEECCCC--ceeEEeecCCcCeEEEeecccCC-ccEEEEEcCCCeEEEEEcCCCCc---------------------e--
Q 001336 454 VWDAVTG--TKQYIFEGHESPVYSICPHHKEN-IQFIFSTATDGKIKAWLYDNLGS---------------------R-- 507 (1097)
Q Consensus 454 iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~---------------------~-- 507 (1097)
++.-... +.+.++.||.+.|.+++|..... .-+|+++|.|..||+|.+..... .
T Consensus 173 ~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~ 252 (764)
T KOG1063|consen 173 LYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEE 252 (764)
T ss_pred EeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeee
Confidence 8875533 45678999999999999865544 46889999999999997643220 0
Q ss_pred --------eeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC--eeeEEe----cCCCCcceEEEEEcCCC
Q 001336 508 --------VDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG--AVKRTY----HGLGKRSVGVVQFDTTK 573 (1097)
Q Consensus 508 --------~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~----~~~~~~~v~~~~~~~~~ 573 (1097)
..+.+|...|+++.|+|.+..|++++.|+ .+.+|...+. .-+... .++........-|+|++
T Consensus 253 i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDk----smiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~ 328 (764)
T KOG1063|consen 253 IQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADK----SMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS 328 (764)
T ss_pred EEEEEehhhhhcCcccceEEEEEccchhhheecccCc----ceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC
Confidence 01346778999999999999999998765 5899977654 222111 12233368889999999
Q ss_pred CEEEEEeCCCcEEEEECCC-CceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccc
Q 001336 574 NRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDAS 652 (1097)
Q Consensus 574 ~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 652 (1097)
+.+++-+..|..++|.... .......-..+|...|..++|+|.|.+|.+.+.|.+-|+|-.-..+..
T Consensus 329 ~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~------------ 396 (764)
T KOG1063|consen 329 NVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE------------ 396 (764)
T ss_pred CEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc------------
Confidence 9999999999999998332 333333333466889999999999999999999999999853311000
Q ss_pred cccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEec
Q 001336 653 RVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLR 732 (1097)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~ 732 (1097)
|.- .
T Consensus 397 ----------------------------------------------------------------wHE------------i 400 (764)
T KOG1063|consen 397 ----------------------------------------------------------------WHE------------I 400 (764)
T ss_pred ----------------------------------------------------------------eee------------e
Confidence 100 0
Q ss_pred cCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEE
Q 001336 733 LPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCF 812 (1097)
Q Consensus 733 ~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l 812 (1097)
...+.|...+.|++|-+....+++|.+...+|+|+.+..-.... ..+. .+..... ..++ ....|..+
T Consensus 401 aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l-~~i~-------g~~~~~~--~~~p---~gA~VpaL 467 (764)
T KOG1063|consen 401 ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSL-MAIC-------GKCFKGS--DELP---DGANVPAL 467 (764)
T ss_pred cccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHH-HHHh-------CccccCc--hhcc---cccccccc
Confidence 11134788899999999777799999999999998774300000 0000 0000000 0000 11222333
Q ss_pred EEccCCCEE-EEEeCCe-------------EEEEEc---------CCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECC
Q 001336 813 ALSKNDSYV-MSASGGK-------------ISLFNM---------MTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED 869 (1097)
Q Consensus 813 ~~s~dg~~l-a~~sdg~-------------i~iwd~---------~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~d 869 (1097)
-.|.+.-+. .+.+.+. ..+... .....+..+.||...|.+++.+| +++++|+++..
T Consensus 468 GLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS 546 (764)
T KOG1063|consen 468 GLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKS 546 (764)
T ss_pred cccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhh
Confidence 333221111 0000000 000000 01223455778999999999999 99999999865
Q ss_pred C-----cEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCe
Q 001336 870 S-----SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADT 944 (1097)
Q Consensus 870 g-----~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 944 (1097)
. .|++|+..+...+..+.+|+-.|+.++|||||++|++.+.|.++.+|+.......... +.....|. .-|.
T Consensus 547 ~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~-fa~~k~Ht---RIIW 622 (764)
T KOG1063|consen 547 SLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR-FACLKAHT---RIIW 622 (764)
T ss_pred CCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh-hccccccc---eEEE
Confidence 4 6999999998888899999999999999999999999999999999998665433332 12223333 4578
Q ss_pred EEEEcCCCcEEEE-EeCCeEEEEeCCCc--ceeeeeeccCCCCCEEEEEEec-----CCCEEEEEecCCeEEEEeCCCCc
Q 001336 945 RVQFHLDQTHLLA-VHETQIAIYEAPKL--ECLKQFVPREASGPITHATYSC-----DSQSIYVAFEEGSVGVLTASTLR 1016 (1097)
Q Consensus 945 ~l~~s~dg~~l~~-~~d~~v~vwd~~~~--~~~~~~~~~~h~~~v~~v~~s~-----dg~~l~s~s~Dg~v~vwd~~~~~ 1016 (1097)
.+.|+||+.++++ +.|.+|.||..... +.+..+....++..|+.+++.+ .+..++.|-+.|.|.+|....-.
T Consensus 623 dcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~ 702 (764)
T KOG1063|consen 623 DCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREH 702 (764)
T ss_pred EcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccc
Confidence 8999999999999 58999999999988 6776666567899999999976 22367888899999999965111
Q ss_pred ee-----eeeCCCCcCCCCCCCceeeEEEEEcCCC---------CCEEEEEecCCcEEEEecC
Q 001336 1017 LR-----CRINPTAYLPTNPSLRVYPLVIAGNPTD---------PNQFALGLTDGGVYIIEPL 1065 (1097)
Q Consensus 1017 ~~-----~~~~~~~~~~~~h~~~v~~l~i~~~p~~---------~~~l~s~~~Dg~v~~W~~~ 1065 (1097)
.. ..+.....-..+|.+.|+.+ .|.|.. ...|++|++|.+++++++.
T Consensus 703 ~~~~~~~~~~~~~l~~~~~~~~aV~rl--~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 703 RQVTVGTFNLDTRLCATIGPDSAVNRL--LWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ccccceeeeeccccccccChHHhhhee--EeccccccccccccceeEEeeecccceeEEeecc
Confidence 10 00110001112477778877 777752 2367999999999999875
No 18
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7e-40 Score=329.85 Aligned_cols=286 Identities=19% Similarity=0.272 Sum_probs=260.9
Q ss_pred CCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001336 378 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 457 (1097)
Q Consensus 378 ~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~ 457 (1097)
.|.+.+|..+.||+|++.||+|+.+|.++||+..+...+. +|.||...|.++.|+|......++||+.||++++|++
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 3567899999999999999999999999999999875444 6999999999999999842227999999999999999
Q ss_pred CCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCC
Q 001336 458 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE 537 (1097)
Q Consensus 458 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 537 (1097)
.+..++..+.+|...|..++|+| +|++|.|++.|.+-++||+++.......++|...|.+++|.+||..+++||.|.
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~- 325 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS- 325 (459)
T ss_pred CCCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccc-
Confidence 99999999999999999999954 569999999999999999999999999999999999999999999999998754
Q ss_pred CCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcC-C
Q 001336 538 GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-E 616 (1097)
Q Consensus 538 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~ 616 (1097)
.-++||+++|+++..+.+|.. .|..+.|+|+|..+++||.|++++|||++..+.+.++..| ..-|+.|.|+| .
T Consensus 326 ---~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH--~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 326 ---LGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH--SNLVSQVKYSPQE 399 (459)
T ss_pred ---hhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc--cchhhheEecccC
Confidence 578999999999999999987 9999999999999999999999999999999999998876 77899999999 7
Q ss_pred CCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCC
Q 001336 617 GILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDS 696 (1097)
Q Consensus 617 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1097)
|.+|++++.|++++||...+. .+++.+.
T Consensus 400 g~fL~TasyD~t~kiWs~~~~-~~~ksLa--------------------------------------------------- 427 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWSTRTW-SPLKSLA--------------------------------------------------- 427 (459)
T ss_pred CeEEEEcccCcceeeecCCCc-ccchhhc---------------------------------------------------
Confidence 899999999999999998776 4444433
Q ss_pred CCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEec
Q 001336 697 RNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 767 (1097)
Q Consensus 697 ~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~ 767 (1097)
||.+.|.++.+++|++.+++++.|.++++|.
T Consensus 428 ----------------------------------------GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 428 ----------------------------------------GHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ----------------------------------------CCccceEEEEeccCCceEEEeccCceeeecc
Confidence 4888999999999999999999999999994
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2e-37 Score=297.47 Aligned_cols=292 Identities=16% Similarity=0.278 Sum_probs=262.2
Q ss_pred EEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEc
Q 001336 312 VVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 390 (1097)
Q Consensus 312 ~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 390 (1097)
..++|+ |...|.++.|++|.++| +++|.||.+.|||.-+....+. +.-....|..++|+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~i-vSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~s 106 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRI-VSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYS 106 (343)
T ss_pred eEEEecccccceeeeEecCCcCeE-EeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEEC
Confidence 346777 99999999999999965 8999999999999987766553 33467899999999
Q ss_pred cCCCEEEEEECCCEEEEEEccCC--e-eeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEee
Q 001336 391 PDGTLFGVAYSKHIVHLYTYHGG--D-ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE 467 (1097)
Q Consensus 391 pd~~~las~~~dg~i~iwd~~~~--~-~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 467 (1097)
|.|+++|+|+-|....||++.+. + .++....+.+|.+.+.|+.|.+|+. |+|++.|.+..+||+++|+.+..|.
T Consensus 107 PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 107 PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred CCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEec
Confidence 99999999999999999999854 1 2334446899999999999999776 9999999999999999999999999
Q ss_pred cCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeC
Q 001336 468 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 547 (1097)
Q Consensus 468 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 547 (1097)
+|.+.|.++.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|.+++|.|+|.-+++++.|+ +.++||+
T Consensus 184 GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~----tcRlyDl 258 (343)
T KOG0286|consen 184 GHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDA----TCRLYDL 258 (343)
T ss_pred CCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCc----eeEEEee
Confidence 99999999999764 678999999999999999999999999999999999999999999999998644 6999999
Q ss_pred CCCeeeEEecCCC-CcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECC
Q 001336 548 SEGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 626 (1097)
Q Consensus 548 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d 626 (1097)
+..+.+..|.... ..+|++++|+..|++|++|..|..+.+||.-.++.+..+.+| ...|.|+..+|||..+++|+.|
T Consensus 259 RaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH--eNRvScl~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 259 RADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH--ENRVSCLGVSPDGMAVATGSWD 336 (343)
T ss_pred cCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc--CCeeEEEEECCCCcEEEecchh
Confidence 9999888887542 247899999999999999999999999999999999999966 6799999999999999999999
Q ss_pred CcEEEEE
Q 001336 627 NGIKILA 633 (1097)
Q Consensus 627 g~i~iw~ 633 (1097)
.++|||.
T Consensus 337 s~lriW~ 343 (343)
T KOG0286|consen 337 STLRIWA 343 (343)
T ss_pred HheeecC
Confidence 9999994
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-37 Score=295.02 Aligned_cols=297 Identities=21% Similarity=0.302 Sum_probs=253.3
Q ss_pred EEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEc
Q 001336 312 VVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 390 (1097)
Q Consensus 312 ~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 390 (1097)
+..+++ |.+.|+.++..+.+..++.+++.|.++.+|++.......- .+...+.||+..|..+..+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G--------------~~~r~~~GHsH~v~dv~~s 72 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG--------------VPVRRLTGHSHFVSDVVLS 72 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC--------------ceeeeeeccceEecceEEc
Confidence 445666 9999999999999999999999999999999876532221 1122388999999999999
Q ss_pred cCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecC-
Q 001336 391 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH- 469 (1097)
Q Consensus 391 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h- 469 (1097)
+||++.++++.|+++++||+.+|+..+ .|.||...|.+++|++|+. .++||+.|++|++|++. |.+..++..+
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~ 146 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDS 146 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCC
Confidence 999999999999999999999997555 4889999999999999999 69999999999999964 5556655544
Q ss_pred -CcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCC
Q 001336 470 -ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 548 (1097)
Q Consensus 470 -~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 548 (1097)
.+.|.|++|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++++.+ +.+.+||++
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkd----g~~~LwdL~ 222 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKD----GEAMLWDLN 222 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCC----ceEEEEEcc
Confidence 789999999999877999999999999999999999999999999999999999999999998764 469999999
Q ss_pred CCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC-------CCCcceEEEcCCCCEEE
Q 001336 549 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG-------LQASPCIRFNKEGILLA 621 (1097)
Q Consensus 549 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~ 621 (1097)
.++.+..+.... .|.+++|+|+.-.|+. ..+..|+|||++++..+..+....- .....+++|+++|..|+
T Consensus 223 ~~k~lysl~a~~--~v~sl~fspnrywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf 299 (315)
T KOG0279|consen 223 EGKNLYSLEAFD--IVNSLCFSPNRYWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLF 299 (315)
T ss_pred CCceeEeccCCC--eEeeEEecCCceeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEE
Confidence 999988776654 8999999998655544 4456699999999998887754321 22356789999999999
Q ss_pred EEECCCcEEEEEcC
Q 001336 622 VSTNDNGIKILANA 635 (1097)
Q Consensus 622 s~~~dg~i~iw~~~ 635 (1097)
+|..|+.|++|.+.
T Consensus 300 ~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 300 AGYTDNVIRVWQVA 313 (315)
T ss_pred eeecCCcEEEEEee
Confidence 99999999999864
No 21
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=7.1e-36 Score=325.16 Aligned_cols=563 Identities=15% Similarity=0.188 Sum_probs=408.4
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
+...|+|++=+.+-- +++ + ...|.+|. .|+.+.. +..+|.+.|.-+. |=|.++.
T Consensus 75 lp~~I~alas~~~~v--y~A-~-g~~i~~~~--rgk~i~~------------------~~~~~~a~v~~l~--~fGe~li 128 (910)
T KOG1539|consen 75 LPDKITALASDKDYV--YVA-S-GNKIYAYA--RGKHIRH------------------TTLLHGAKVHLLL--PFGEHLI 128 (910)
T ss_pred CCCceEEEEecCceE--EEe-c-CcEEEEEE--ccceEEE------------------EeccccceEEEEe--eecceEE
Confidence 678899988766543 222 2 23355554 3322221 2556777777655 4688999
Q ss_pred EEECCCEEEEEEccCC-eeeee-eeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEE
Q 001336 398 VAYSKHIVHLYTYHGG-DELRN-HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 475 (1097)
Q Consensus 398 s~~~dg~i~iwd~~~~-~~~~~-~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 475 (1097)
++..++.+.||+..++ +++.. ...++...+.|+++ ++|..--..++.|+.+|.+.+|++++++.+++++++...|++
T Consensus 129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ 207 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA 207 (910)
T ss_pred EEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE
Confidence 9999999999999884 22111 11122222337776 456543236899999999999999999999999999999999
Q ss_pred EeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEE
Q 001336 476 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 555 (1097)
Q Consensus 476 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 555 (1097)
+.-+|-- +.++.|..+|+|.+++++..+....+....+.|++++|..||+.+++.+.. .+.+.+||++..+.+..
T Consensus 208 ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~---~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 208 IEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS---NGDMAFWDLEKKKLINV 282 (910)
T ss_pred eccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccC---CceEEEEEcCCCeeeee
Confidence 9765544 689999999999999999999999998877899999999999987776532 44699999999998888
Q ss_pred ecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----eEEEEecCCCCCCcceEEEc-CCCCEEEEEECCCcEE
Q 001336 556 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN----LLASIDADGGLQASPCIRFN-KEGILLAVSTNDNGIK 630 (1097)
Q Consensus 556 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s-~~~~~l~s~~~dg~i~ 630 (1097)
....+.+.+....|.|....+++++.|..+++|=.+++. .+..-. ||..+-.|+.|. .+|..+.+++.|++++
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~--GHs~Pp~~irfy~~~g~~ilsa~~Drt~r 360 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG--GHSAPPSCIRFYGSQGHFILSAKQDRTLR 360 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc--CCCCCchheeeeccCcEEEEecccCcchh
Confidence 775444488899999999999999999999988665433 233333 557788999998 5889999999999999
Q ss_pred EEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCC-CCCCccccCcccccc
Q 001336 631 ILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSN-DSRNFTDVKPKIADE 709 (1097)
Q Consensus 631 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 709 (1097)
.+++.........-+.|..... ...+. ... .....+++..|.. ..+.....+.+.+.-
T Consensus 361 ~fs~~~e~~~~~l~~~~~~~~~-------------kk~~~----~~~----~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~ 419 (910)
T KOG1539|consen 361 SFSVISESQSQELGQLHNKKRA-------------KKVNV----FST----EKLKLPPIVEFAFENAREKEWDNVITAHK 419 (910)
T ss_pred hhhhhHHHHhHhhccccccccc-------------ccccc----cch----hhhcCCcceeeecccchhhhhcceeEEec
Confidence 9887543111100001100000 00000 000 0011122333322 222333445566666
Q ss_pred cccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccC
Q 001336 710 AVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQ 789 (1097)
Q Consensus 710 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~ 789 (1097)
.+...+.|+........-.-. .-+.+.....+.+++.++-|++.+.|...|.|.+|+++.+
T Consensus 420 ~~~~~~tW~~~n~~~G~~~L~-~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG------------------ 480 (910)
T KOG1539|consen 420 GKRSAYTWNFRNKTSGRHVLD-PKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG------------------ 480 (910)
T ss_pred CcceEEEEeccCcccccEEec-CccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC------------------
Confidence 677889999876443211110 1111224578999999999999999999999999977642
Q ss_pred CCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEEC
Q 001336 790 PPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME 868 (1097)
Q Consensus 790 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~ 868 (1097)
...........|..+|++++...-++.+++++ +|.+++||..+...+..++ -...+.++.++. ...++|.+..
T Consensus 481 ----i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-~s~l~a~~~d 554 (910)
T KOG1539|consen 481 ----IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-VSDLLAIALD 554 (910)
T ss_pred ----eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-hhhhhhhhcC
Confidence 22222111224999999999999999999988 9999999999888777776 567788999988 7889999999
Q ss_pred CCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEE
Q 001336 869 DSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQF 948 (1097)
Q Consensus 869 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 948 (1097)
|-.|+++|..+.+.++.+.||.+.|++++|||||++|++++.|++|++||+.++.+.....+. .+.+.+.|
T Consensus 555 df~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---------~~~~sls~ 625 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---------SPCTSLSF 625 (910)
T ss_pred ceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC---------CcceeeEE
Confidence 999999999999999999999999999999999999999999999999999997743322211 45789999
Q ss_pred cCCCcEEEEE-eC-CeEEEEeCC
Q 001336 949 HLDQTHLLAV-HE-TQIAIYEAP 969 (1097)
Q Consensus 949 s~dg~~l~~~-~d-~~v~vwd~~ 969 (1097)
||.|.+||++ .| ..|++|.=.
T Consensus 626 SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 626 SPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred CCCCCEEEEEEecCceEEEEEch
Confidence 9999999995 33 678888644
No 22
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-36 Score=315.41 Aligned_cols=475 Identities=16% Similarity=0.267 Sum_probs=356.3
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
++..|.++.|+|...++ .++-..|.|.|||.++...+.. +.-..-+|.+..|-+..++++
T Consensus 12 rSdRVKsVd~HPtePw~-la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWI-LAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCceE-EEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 78899999999999986 5678899999999999887764 233566899999999999999
Q ss_pred EEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEeecCCcCeEEE
Q 001336 398 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSI 476 (1097)
Q Consensus 398 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~ 476 (1097)
+|+.|..|+||++.+++.++ .+..|.+.|.+++.+|... +++|+|.|-+|++||.+.+ .+.++|.||+..|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999987666 6899999999999999999 8999999999999999865 6788999999999999
Q ss_pred eecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCC--CEEEEeeeCCCCCceEEEEeCCCCeeeE
Q 001336 477 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG--ARLFSCGTNKEGESYLVEWNESEGAVKR 554 (1097)
Q Consensus 477 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 554 (1097)
+|.|... +.+++++.|++|++|.+....+...+++|...|.++.+-+.| .+|++++. +..+++||.++..+++
T Consensus 147 ~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHH
Confidence 9987654 789999999999999999999999999999999999998755 58999875 5579999999999999
Q ss_pred EecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001336 555 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 634 (1097)
Q Consensus 555 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~ 634 (1097)
++.||.. .|..++|+|.-..+++|++||+++||+..+-++..++... ...+.|++-.+.+..+++|.+.|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 9999999999999999999999999999998888888754 568999999998889999999887765 22
Q ss_pred CCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCccccccccccc
Q 001336 635 ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS 714 (1097)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 714 (1097)
..+.. .++-+..|+
T Consensus 298 greeP-----------------------------------------------------------------~vsMd~~gK- 311 (794)
T KOG0276|consen 298 GREEP-----------------------------------------------------------------AVSMDSNGK- 311 (794)
T ss_pred cCCCC-----------------------------------------------------------------ceeecCCcc-
Confidence 21100 011111111
Q ss_pred ccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCc
Q 001336 715 RIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGI 794 (1097)
Q Consensus 715 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 794 (1097)
.+|... +.|..+.. -+.+.++ ++..|+
T Consensus 312 Iiwa~~-------------------~ei~~~~~-------ks~~~~~---------------------------ev~DgE 338 (794)
T KOG0276|consen 312 IIWAVH-------------------SEIQAVNL-------KSVGAQK---------------------------EVTDGE 338 (794)
T ss_pred EEEEcC-------------------ceeeeeec-------eeccCcc---------------------------cccCCc
Confidence 122211 11111110 0001110 122222
Q ss_pred cccccCCCCC-CCCCeeEEEEccCCCEEEEEeCCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEE
Q 001336 795 LMTNDISDTN-PEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQ 873 (1097)
Q Consensus 795 ~~~~~~~~~~-h~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~ 873 (1097)
.+.......+ -.-....++-||+|+++++++||.-.||..-..+ ....+.-....|++ |....|+-..++.|+
T Consensus 339 rL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~R-----nK~fG~~~eFvw~~-dsne~avRes~~~vk 412 (794)
T KOG0276|consen 339 RLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALR-----NKAFGSGLEFVWAA-DSNEFAVRESNGNVK 412 (794)
T ss_pred cccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehh-----hcccccceeEEEcC-CCCeEEEEecCCceE
Confidence 2221111100 1112345788999999999999999999743222 12446677889998 777888888899999
Q ss_pred EEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCc
Q 001336 874 IYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQT 953 (1097)
Q Consensus 874 vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 953 (1097)
++ ++.+..+.++..-. +..--.|.+|...+ ++.+++||-++++... .+.+ ....+.|+.+|.
T Consensus 413 i~--knfke~ksi~~~~~----~e~i~gg~Llg~~s-s~~~~fydW~~~~lVr--rI~v---------~~k~v~w~d~g~ 474 (794)
T KOG0276|consen 413 IF--KNFKEHKSIRPDMS----AEGIFGGPLLGVRS-SDFLCFYDWESGELVR--RIEV---------TSKHVYWSDNGE 474 (794)
T ss_pred EE--ecceeccccccccc----eeeecCCceEEEEe-CCeEEEEEcccceEEE--EEee---------ccceeEEecCCC
Confidence 98 56666555542211 11112355555555 5569999998866322 1111 245699999999
Q ss_pred EEEEEeCCeEEEEeCC
Q 001336 954 HLLAVHETQIAIYEAP 969 (1097)
Q Consensus 954 ~l~~~~d~~v~vwd~~ 969 (1097)
+++.+.|...+++..+
T Consensus 475 lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 475 LVAIAGDDSFYILKFN 490 (794)
T ss_pred EEEEEecCceeEEEec
Confidence 9999888887776654
No 23
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-35 Score=322.81 Aligned_cols=499 Identities=15% Similarity=0.233 Sum_probs=355.0
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
.+..|..++|+|...++ .++-..|.|.+||.+-+.++.. +.+|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rPwI-LtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWI-LTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCEE-EEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 46789999999999976 5788999999999999988875 789999999999999999999
Q ss_pred EEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEe
Q 001336 398 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC 477 (1097)
Q Consensus 398 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 477 (1097)
+|+.|..|+||++++.+++. ++.||-+.|..+.|++.-. +++|+|.|.+|+||++.+++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999876654 6999999999999999888 999999999999999999999999999999999999
Q ss_pred ecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEec
Q 001336 478 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 557 (1097)
Q Consensus 478 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 557 (1097)
|+|.. ..++++|.|.+||+||+...+....-.. ++.=...+..+. .-++-.........+.
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~~-----------~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQGN-----------SDLFGQTDAVVKHVLE 203 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCC------Cchhhhhccccc-----------hhhcCCcCeeeeeeec
Confidence 98876 5899999999999999975433322111 000001111110 0111111223456778
Q ss_pred CCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 558 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
||.. .|+.++|+|.-..|++|++|..|++|.+...+....-...+|...|.++-|+|...++++.|.|++|++||+...
T Consensus 204 GHDR-GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 204 GHDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred cccc-ccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 8887 899999999999999999999999999988776665555567889999999999999999999999999999765
Q ss_pred ceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccc
Q 001336 638 IRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIW 717 (1097)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w 717 (1097)
..++.++.
T Consensus 283 -t~v~tfrr----------------------------------------------------------------------- 290 (1202)
T KOG0292|consen 283 -TSVQTFRR----------------------------------------------------------------------- 290 (1202)
T ss_pred -cceeeeec-----------------------------------------------------------------------
Confidence 33433321
Q ss_pred cccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCcccc
Q 001336 718 KLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT 797 (1097)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 797 (1097)
...+...++.+|..+.+++|.+. -+.||.++
T Consensus 291 --------------------endRFW~laahP~lNLfAAgHDs-Gm~VFkle---------------------------- 321 (1202)
T KOG0292|consen 291 --------------------ENDRFWILAAHPELNLFAAGHDS-GMIVFKLE---------------------------- 321 (1202)
T ss_pred --------------------cCCeEEEEEecCCcceeeeecCC-ceEEEEEc----------------------------
Confidence 33556778889999866655544 45566543
Q ss_pred ccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEcCCCce--eEEeCCC---CCCeEEEEEeCCCCCEEEEEECC-Cc
Q 001336 798 NDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MTTFMPP---PPAATFLAFHPQDNNIIAIGMED-SS 871 (1097)
Q Consensus 798 ~~~~~~~h~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~--~~~~~~~---~~~i~~l~~sp~~~~~la~g~~d-g~ 871 (1097)
.+.++.++ ++..|....|..|+-+|+.+.+- +..++.. ..+..++.++|..+..+++...| |.
T Consensus 322 -------RErpa~~v----~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~ 390 (1202)
T KOG0292|consen 322 -------RERPAYAV----NGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGE 390 (1202)
T ss_pred -------ccCceEEE----cCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCe
Confidence 22333333 23444444588899999987543 3334433 35789999999555555554433 44
Q ss_pred EEEEEcccceEE----EEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEE
Q 001336 872 IQIYNVRVDEVK----TKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQ 947 (1097)
Q Consensus 872 v~vwd~~~~~~~----~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 947 (1097)
..++.+...... .... ......++-.+. .++.+---.+..+.+-++.... .+.++.+. ....+.
T Consensus 391 y~L~~ipk~~~~~~~~~~~~-k~tG~~a~fvar-Nrfavl~k~~~~v~ik~l~N~v---tkkl~~~~-------~~~~IF 458 (1202)
T KOG0292|consen 391 YELVQIPKDSDGVSDGKDVK-KGTGEGALFVAR-NRFAVLDKSNEQVVIKNLKNKV---TKKLLLPE-------STDDIF 458 (1202)
T ss_pred EEEEEecCcccccCCchhhh-cCCCCceEEEEe-cceEEEEecCcceEEecccchh---hhcccCcc-------ccccee
Confidence 445554432100 1000 111223333332 3333333335556666666532 12222221 244566
Q ss_pred EcCCCcEEEEEeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEe
Q 001336 948 FHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLT 1011 (1097)
Q Consensus 948 ~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd 1011 (1097)
+.-+|.+|+. +...|.+||+...+.+..+. -..|..+.||+|+.+++--+ ..+|.|.+
T Consensus 459 ~ag~g~lll~-~~~~v~lfdvQq~~~~~si~----~s~vkyvvws~dm~~vAll~-Kh~i~i~~ 516 (1202)
T KOG0292|consen 459 YAGTGNLLLR-SPDSVTLFDVQQKKKVGSIK----VSKVKYVVWSNDMSRVALLS-KHTITIAD 516 (1202)
T ss_pred eccCccEEEE-cCCeEEEEEeecceEEEEEe----cCceeEEEEcCccchhhhcc-cceEEEEe
Confidence 6677765554 56789999999988888887 57899999999998876554 34555555
No 24
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.3e-36 Score=291.84 Aligned_cols=287 Identities=17% Similarity=0.227 Sum_probs=259.1
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001336 376 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 455 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 455 (1097)
+++||.+.|.++.|++|.++|++++.||.+.|||.-+...+. -+.-....|..++|+|.|+ +++.|+-|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 489999999999999999999999999999999998765444 3555778999999999999 89999999999999
Q ss_pred ECCCC------ceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEcc-CCCE
Q 001336 456 DAVTG------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA-DGAR 528 (1097)
Q Consensus 456 d~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 528 (1097)
++.+. +..+++.+|++.+.|+.|.. | ..|++++.|.+..+||++++.....+.+|.+.|.++.++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 99855 34567999999999999844 3 5899999999999999999999999999999999999999 9999
Q ss_pred EEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCc
Q 001336 529 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS 608 (1097)
Q Consensus 529 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 608 (1097)
+++++.|+ ..++||++.+..+++|.+|.. .|++++|.|+|.-|++|++|++.++||++..+.+..+........|
T Consensus 202 FvSg~cD~----~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 202 FVSGGCDK----SAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred EEeccccc----ceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence 99998755 589999999999999999998 9999999999999999999999999999999999999877777889
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccc
Q 001336 609 PCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAA 688 (1097)
Q Consensus 609 ~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1097)
++++|+..|++|++|..|.++.+||.-.+ +....+
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L-------------------------------------------- 311 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVL-------------------------------------------- 311 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeecccc-ceEEEe--------------------------------------------
Confidence 99999999999999999999999997655 222221
Q ss_pred cccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEec
Q 001336 689 MVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 767 (1097)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~ 767 (1097)
.+|.++|+++..+|||..+++++.|..++||.
T Consensus 312 -----------------------------------------------~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 312 -----------------------------------------------AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred -----------------------------------------------eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 14899999999999999999999999999993
No 25
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-35 Score=311.58 Aligned_cols=459 Identities=15% Similarity=0.220 Sum_probs=354.1
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 456 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 456 (1097)
+..++..|.++.|+|...+++++-.+|.|.||+.++...++. +.-..-+|.+..|-..-+ ++++|+.|..|+|++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVks---feV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKS---FEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeee---eeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 455899999999999999999999999999999999887774 666788999999998777 899999999999999
Q ss_pred CCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCC-CceeeecCCCCceEEEEEcc-CCCEEEEeee
Q 001336 457 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSA-DGARLFSCGT 534 (1097)
Q Consensus 457 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 534 (1097)
..+++.++.|..|.+.|.+++.+|.. .+++++++|-+|++||++.. .+...+++|.+-|.+++|.| |.+.+++++.
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999997765 79999999999999999864 46678999999999999999 5678999987
Q ss_pred CCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEE
Q 001336 535 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK--NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR 612 (1097)
Q Consensus 535 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 612 (1097)
|+ +|++|.+.+..+..++.+|.. .|+++.+-+.| .+|++|++|..|+|||..+..+++++.+| ...|+.+.
T Consensus 162 Dr----TVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH--t~Nvs~v~ 234 (794)
T KOG0276|consen 162 DR----TVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH--TNNVSFVF 234 (794)
T ss_pred cc----cEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc--cccceEEE
Confidence 55 699999999999999999998 89999997755 79999999999999999999999999977 66899999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccC
Q 001336 613 FNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM 692 (1097)
Q Consensus 613 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1097)
|+|.-..+++|+.||++|||+..+- +....+.
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn----------------------------------------------- 266 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLN----------------------------------------------- 266 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhh-----------------------------------------------
Confidence 9999999999999999999987654 2111110
Q ss_pred CCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCC
Q 001336 693 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNE 772 (1097)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~ 772 (1097)
-.-.++.+++..+.+..++.|.++|.+.+=
T Consensus 267 --------------------------------------------~gleRvW~I~~~k~~~~i~vG~Deg~i~v~------ 296 (794)
T KOG0276|consen 267 --------------------------------------------YGLERVWCIAAHKGDGKIAVGFDEGSVTVK------ 296 (794)
T ss_pred --------------------------------------------cCCceEEEEeecCCCCeEEEeccCCcEEEE------
Confidence 023567788888888889999999888761
Q ss_pred CCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEeC--CeEEEE------EcCCCceeEE--
Q 001336 773 RNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASG--GKISLF------NMMTFKTMTT-- 842 (1097)
Q Consensus 773 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sd--g~i~iw------d~~~~~~~~~-- 842 (1097)
-......+.+++.|+.+-+... -.+.+- ++.+|+.+..
T Consensus 297 --------------------------------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~Lsv 344 (794)
T KOG0276|consen 297 --------------------------------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSV 344 (794)
T ss_pred --------------------------------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchh
Confidence 1122234555666655544332 112222 2333332211
Q ss_pred --eCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 001336 843 --FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTD 920 (1097)
Q Consensus 843 --~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~ 920 (1097)
+-...-....++-+| +|+++++++ ||.-.||..-..+ ..+.+.-....|++|....+.--.++.|+++ +
T Consensus 345 KeLgs~eiyPq~L~hsP-NGrfV~Vcg-dGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--k 415 (794)
T KOG0276|consen 345 KELGSVEIYPQTLAHSP-NGRFVVVCG-DGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--K 415 (794)
T ss_pred hhccccccchHHhccCC-CCcEEEEec-CccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--e
Confidence 111111235678889 888777665 8988998743211 1244556778899998888888888889988 3
Q ss_pred CCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEE
Q 001336 921 GWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYV 1000 (1097)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s 1000 (1097)
..+..+ .+.. -.....--.|.+|.+..++.+++||.++++.++.+.. ....+.|+.+|.+++.
T Consensus 416 nfke~k--si~~----------~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v-----~~k~v~w~d~g~lVai 478 (794)
T KOG0276|consen 416 NFKEHK--SIRP----------DMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV-----TSKHVYWSDNGELVAI 478 (794)
T ss_pred cceecc--cccc----------ccceeeecCCceEEEEeCCeEEEEEcccceEEEEEee-----ccceeEEecCCCEEEE
Confidence 322111 1111 1112233346667777899999999999999998863 4567899999999998
Q ss_pred EecCC
Q 001336 1001 AFEEG 1005 (1097)
Q Consensus 1001 ~s~Dg 1005 (1097)
++.|.
T Consensus 479 ~~d~S 483 (794)
T KOG0276|consen 479 AGDDS 483 (794)
T ss_pred EecCc
Confidence 88664
No 26
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=8.4e-34 Score=291.45 Aligned_cols=540 Identities=16% Similarity=0.178 Sum_probs=388.2
Q ss_pred eEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECC
Q 001336 323 KSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK 402 (1097)
Q Consensus 323 ~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~d 402 (1097)
..+-+-|.|..+..++ +.+.+++++...+.. +.||+..|.|++.+||.-.+|+|-..
T Consensus 69 ~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc~~vHPdri~vatGQ~a 125 (626)
T KOG2106|consen 69 NNLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKCMAVHPDRIRVATGQGA 125 (626)
T ss_pred ceeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEEEeecCCceeeccCccc
Confidence 3456667776544433 346778876543332 68999999999999999999987554
Q ss_pred C--------EEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEE--EeCCCcEEEEECCCCceeEEeecCCcC
Q 001336 403 H--------IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVT--CGEDRVIKVWDAVTGTKQYIFEGHESP 472 (1097)
Q Consensus 403 g--------~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s--~s~d~~i~iwd~~~~~~~~~~~~h~~~ 472 (1097)
| .|+|||..+-..+. .+..-...|+|++||+-+...+++. -+.+..+.+||...+......+..+..
T Consensus 126 g~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~ 202 (626)
T KOG2106|consen 126 GTSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEV 202 (626)
T ss_pred ccCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccce
Confidence 4 59999977644343 4556677899999998433213333 355668999999999888878777888
Q ss_pred eEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceee---ecCC-CCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCC
Q 001336 473 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD---YDAP-GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 548 (1097)
Q Consensus 473 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 548 (1097)
|....|+|... +++++.+. +.+.+|+++.+..... ++.+ ...|.+++|.++|..+- + |..+.|.+|+..
T Consensus 203 v~~a~FHPtd~-nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT-g----DS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 203 VFLATFHPTDP-NLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT-G----DSGGNILIWSKG 275 (626)
T ss_pred EEEEEeccCCC-cEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe-e----cCCceEEEEeCC
Confidence 89999988765 56666665 8999999886654332 2222 25799999999998654 3 335679999999
Q ss_pred CCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCc
Q 001336 549 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNG 628 (1097)
Q Consensus 549 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~ 628 (1097)
+.+..+....|.+ .|.+++...+|.. ++|+.|+.|..|| ..-+.++....+...+.|..++-...+ |+.|...+.
T Consensus 276 ~~~~~k~~~aH~g-gv~~L~~lr~Gtl-lSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~ 350 (626)
T KOG2106|consen 276 TNRISKQVHAHDG-GVFSLCMLRDGTL-LSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNF 350 (626)
T ss_pred CceEEeEeeecCC-ceEEEEEecCccE-eecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccce
Confidence 8888888777776 9999999999855 5599999999999 555556666555556677777644322 677776666
Q ss_pred EEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCccccc
Q 001336 629 IKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIAD 708 (1097)
Q Consensus 629 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1097)
|..=.++++..+..
T Consensus 351 iL~Gt~~~~f~~~v------------------------------------------------------------------ 364 (626)
T KOG2106|consen 351 ILQGTLENGFTLTV------------------------------------------------------------------ 364 (626)
T ss_pred EEEeeecCCceEEE------------------------------------------------------------------
Confidence 55444443311110
Q ss_pred ccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCccc
Q 001336 709 EAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLW 788 (1097)
Q Consensus 709 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w 788 (1097)
.+|......++.+|+..++++++.|+.+++|+-.. -+|
T Consensus 365 ---------------------------~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k---------------~~w 402 (626)
T KOG2106|consen 365 ---------------------------QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK---------------LEW 402 (626)
T ss_pred ---------------------------EecccceeeEEcCCChhheeeccCcceEEEccCCc---------------eeE
Confidence 23566777889999999999999999999996111 122
Q ss_pred CCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEE
Q 001336 789 QPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM 867 (1097)
Q Consensus 789 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~ 867 (1097)
... -..++.++.|+|.| .+|.|. .|...+.|.++...+..-. ...++++++|+| +|.+||+|+
T Consensus 403 t~~-------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G~~lAvgs 466 (626)
T KOG2106|consen 403 TKI-------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSP-DGAFLAVGS 466 (626)
T ss_pred EEE-------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcC-CCCEEEEec
Confidence 211 35788999999999 888888 8999999999966555444 488999999999 999999999
Q ss_pred CCCcEEEEEcccc-eEEEEe-cccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeE
Q 001336 868 EDSSIQIYNVRVD-EVKTKL-KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTR 945 (1097)
Q Consensus 868 ~dg~v~vwd~~~~-~~~~~l-~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 945 (1097)
.|+.|+||.+... ...... +.|..+|+.+.||+|+++|.+-+.|-.|..|. .+...+. ..+..
T Consensus 467 ~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~-~~~~~~~--------------ts~kD 531 (626)
T KOG2106|consen 467 HDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK-PSECKQI--------------TSVKD 531 (626)
T ss_pred CCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc-cccCccc--------------ceecc
Confidence 9999999998753 333333 23448999999999999999999999999993 3311111 01222
Q ss_pred EEEcCCCcEEEEEeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCC
Q 001336 946 VQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTA 1025 (1097)
Q Consensus 946 l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~ 1025 (1097)
+.|-...-.| + .......|...|..++-+.+.++||+|.+.|+|++|.....+.. .+.
T Consensus 532 vkW~t~~c~l--G----------------F~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r----A~~ 589 (626)
T KOG2106|consen 532 VKWATYTCTL--G----------------FEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR----APS 589 (626)
T ss_pred eeeeeeEEEE--E----------------EEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc----ccc
Confidence 3332111000 0 00111356778889999999999999999999999998765543 233
Q ss_pred cCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEec
Q 001336 1026 YLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEP 1064 (1097)
Q Consensus 1026 ~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~ 1064 (1097)
+...+|++.|..+ +|.- +..+|++.+.|.+|..|++
T Consensus 590 he~~ghs~~vt~V--~Fl~-~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 590 HEYGGHSSHVTNV--AFLC-KDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred eeeccccceeEEE--EEee-CCceEEecCCCceEEEEEe
Confidence 4455899999987 6666 3466777669999999987
No 27
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.1e-36 Score=285.71 Aligned_cols=297 Identities=17% Similarity=0.203 Sum_probs=249.5
Q ss_pred CcCccceEEEEEccC-CceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEE
Q 001336 736 NLTAMRVSRLIYTNS-GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFAL 814 (1097)
Q Consensus 736 ~~~~~~i~~l~~spd-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~ 814 (1097)
.+|.+.|..++..+. -..+++++.|..+.+|++... |.+.|.++.. +.| |+..|..++.
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~-~~G--HsH~v~dv~~ 71 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR-LTG--HSHFVSDVVL 71 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee-eec--cceEecceEE
Confidence 469999999999887 556788888999999998753 4455555443 555 9999999999
Q ss_pred ccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecc-cccC
Q 001336 815 SKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG-HQKR 892 (1097)
Q Consensus 815 s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~-h~~~ 892 (1097)
++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|++|++|+............ |.+-
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREW 150 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCc
Confidence 99999999999 99999999999999999999999999999999 899999999999999999875443333332 3788
Q ss_pred eEEEEEecC--CCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-EeCCeEEEEeCC
Q 001336 893 ITGLAFSNT--LNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAP 969 (1097)
Q Consensus 893 V~~l~~s~d--g~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~~d~~v~vwd~~ 969 (1097)
|+++.|+|+ ..+|+++|.|++|++||+.+-+ .....-+|. ..++.+++||||.+.+. +.||.+.+||++
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~LwdL~ 222 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWDLN 222 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEEcc
Confidence 999999998 6899999999999999999844 333344444 67999999999999999 589999999999
Q ss_pred CcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCE
Q 001336 970 KLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQ 1049 (1097)
Q Consensus 970 ~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~ 1049 (1097)
.++.+..+ +|...|.+++|+|+.-.|+.+ .+..|+|||++++..+..+.....-++.-.+.+.++.++|++ ||..
T Consensus 223 ~~k~lysl---~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG~t 297 (315)
T KOG0279|consen 223 EGKNLYSL---EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DGQT 297 (315)
T ss_pred CCceeEec---cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CCcE
Confidence 99997666 578999999999997666655 466699999999998877775443343345667888999999 7999
Q ss_pred EEEEecCCcEEEEecCC
Q 001336 1050 FALGLTDGGVYIIEPLE 1066 (1097)
Q Consensus 1050 l~s~~~Dg~v~~W~~~~ 1066 (1097)
|++|..|+.|++|.+..
T Consensus 298 Lf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 298 LFAGYTDNVIRVWQVAK 314 (315)
T ss_pred EEeeecCCcEEEEEeec
Confidence 99999999999998753
No 28
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=7.7e-35 Score=310.80 Aligned_cols=572 Identities=17% Similarity=0.220 Sum_probs=392.2
Q ss_pred EEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCC---EEEEEEC
Q 001336 325 MDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT---LFGVAYS 401 (1097)
Q Consensus 325 v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~---~las~~~ 401 (1097)
..|.|.+ ++|. +....|.+||........ .+.||.++|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vaf-Ga~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAF-GAGPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEe-cCCceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3445544 3344 455789999987653322 3789999999999999888 8999999
Q ss_pred CCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEE-eCCCcEEEEECCCCc--eeEEeecCCcCeE--EE
Q 001336 402 KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTC-GEDRVIKVWDAVTGT--KQYIFEGHESPVY--SI 476 (1097)
Q Consensus 402 dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~-s~d~~i~iwd~~~~~--~~~~~~~h~~~v~--~~ 476 (1097)
|+.|++|.++... +.+..++.+|...+.|+.- ... +.++ +.|+.+.+||.+..+ +...+.--.+.+. |+
T Consensus 78 D~~v~lW~l~~~~-~~~i~~~~g~~~~~~cv~a--~~~---~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL 151 (764)
T KOG1063|consen 78 DGRVILWKLRDEY-LIKIYTIQGHCKECVCVVA--RSS---VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCL 151 (764)
T ss_pred CCcEEEEEEeehh-eEEEEeecCcceeEEEEEe--eee---EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHH
Confidence 9999999999433 5566678887766665542 222 3333 789999999985555 3333332223333 34
Q ss_pred eecccCCccEEEEEcCCCeEEEEEcCCC--CceeeecCCCCceEEEEEccCCC---EEEEeeeCCCCCceEEEEeCCCCe
Q 001336 477 CPHHKENIQFIFSTATDGKIKAWLYDNL--GSRVDYDAPGHSSTMMAYSADGA---RLFSCGTNKEGESYLVEWNESEGA 551 (1097)
Q Consensus 477 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~~~~~~~~i~~wd~~~~~ 551 (1097)
++.++++.-.++.|+.+..|.++.-... .....+.+|...|.+++|...+. +|++++. +..|++|.+.-+.
T Consensus 152 ~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQ----D~yIRiW~i~~~~ 227 (764)
T KOG1063|consen 152 AALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQ----DRYIRIWRIVLGD 227 (764)
T ss_pred hhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCC----ceEEEEEEEEecC
Confidence 4444333345567777888888855433 34556788888999999986554 4555543 6689999875433
Q ss_pred eeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEE
Q 001336 552 VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI 631 (1097)
Q Consensus 552 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~i 631 (1097)
........ .....-+++..+++... +. |.+.-. ..+. +|.+.|+++.|+|.+..|.+++.|.++.+
T Consensus 228 ~~~~~~~e-----~~~t~~~~~~~f~~l~~---i~-~~is~e---all~--GHeDWV~sv~W~p~~~~LLSASaDksmii 293 (764)
T KOG1063|consen 228 DEDSNERE-----DSLTTLSNLPVFMILEE---IQ-YRISFE---ALLM--GHEDWVYSVWWHPEGLDLLSASADKSMII 293 (764)
T ss_pred Cccccccc-----cccccccCCceeeeeee---EE-EEEehh---hhhc--CcccceEEEEEccchhhheecccCcceEE
Confidence 22211110 11222233333333321 11 111100 1122 56889999999999999999999999999
Q ss_pred EEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccc
Q 001336 632 LANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAV 711 (1097)
Q Consensus 632 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 711 (1097)
|...+..-....
T Consensus 294 W~pd~~tGiWv~-------------------------------------------------------------------- 305 (764)
T KOG1063|consen 294 WKPDENTGIWVD-------------------------------------------------------------------- 305 (764)
T ss_pred EecCCccceEEE--------------------------------------------------------------------
Confidence 987654111100
Q ss_pred cccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCC
Q 001336 712 EKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPP 791 (1097)
Q Consensus 712 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~ 791 (1097)
.+++=.+. +.........|+|++..+++-+..|..++|.-.. -..|...
T Consensus 306 -~vRlGe~g----------------g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d--------------~~~w~~~ 354 (764)
T KOG1063|consen 306 -VVRLGEVG----------------GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD--------------KTFWTQE 354 (764)
T ss_pred -EEEeeccc----------------ccccceeeEEEcCCCCEEEEecccCcEEEEeccC--------------ccceeec
Confidence 00100000 1344567788999999999999999999996111 1122211
Q ss_pred CCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcC----CCceeEEeCCCCCCeEEEEEeCCCCCEEEEE
Q 001336 792 SGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMM----TFKTMTTFMPPPPAATFLAFHPQDNNIIAIG 866 (1097)
Q Consensus 792 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~----~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g 866 (1097)
..+. +|...|+.++|+|.|.+|.+.+ |.+-|++-.- +...+...+-|...++|++|-+ ....+++|
T Consensus 355 ------~~iS--GH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSg 425 (764)
T KOG1063|consen 355 ------PVIS--GHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSG 425 (764)
T ss_pred ------cccc--cccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCceeeec
Confidence 1133 4999999999999999999999 9999998653 2345555667888999999998 67788899
Q ss_pred ECCCcEEEEEccc-------------------------------------------ceE---------------------
Q 001336 867 MEDSSIQIYNVRV-------------------------------------------DEV--------------------- 882 (1097)
Q Consensus 867 ~~dg~v~vwd~~~-------------------------------------------~~~--------------------- 882 (1097)
.++..+|+|+... |..
T Consensus 426 AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~ 505 (764)
T KOG1063|consen 426 ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT 505 (764)
T ss_pred ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence 9999999998411 000
Q ss_pred ------------EEEecccccCeEEEEEecCCCEEEEEeCCC-----cEEEEEcCCCcccceeeEeecCCCCCCccCCeE
Q 001336 883 ------------KTKLKGHQKRITGLAFSNTLNVLVSSGADS-----QLCVWSTDGWEKQASKFLTIPNGRTASALADTR 945 (1097)
Q Consensus 883 ------------~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 945 (1097)
++++-||...|++++.+|+|+++||++... .|++|+..++.. .+...+|. -.|+.
T Consensus 506 EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-----~~~L~~Hs---LTVT~ 577 (764)
T KOG1063|consen 506 EDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-----VQELEGHS---LTVTR 577 (764)
T ss_pred HHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-----hheecccc---eEEEE
Confidence 011228889999999999999999998754 589999988653 33445555 46999
Q ss_pred EEEcCCCcEEEE-EeCCeEEEEeCCCcceee-ee-eccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCC--ceeee
Q 001336 946 VQFHLDQTHLLA-VHETQIAIYEAPKLECLK-QF-VPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL--RLRCR 1020 (1097)
Q Consensus 946 l~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~-~~-~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~--~~~~~ 1020 (1097)
++|||||+||++ +.|+++.+|......... .+ ....|..-|+++.|+||+.+++|+|.|++|+||....+ +.+++
T Consensus 578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~ 657 (764)
T KOG1063|consen 578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISR 657 (764)
T ss_pred EEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhh
Confidence 999999999998 799999999986443211 11 13579999999999999999999999999999999888 44444
Q ss_pred eCCCCcCCCCCCCceeeEEEEEcCCC----CCEEEEEecCCcEEEEecC
Q 001336 1021 INPTAYLPTNPSLRVYPLVIAGNPTD----PNQFALGLTDGGVYIIEPL 1065 (1097)
Q Consensus 1021 ~~~~~~~~~~h~~~v~~l~i~~~p~~----~~~l~s~~~Dg~v~~W~~~ 1065 (1097)
+... .++..|+++ +|.|-+ +..++.|-..|.|.+|...
T Consensus 658 ~a~~-----~~~~aVTAv--~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 658 FACL-----KFSLAVTAV--AYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred hchh-----ccCCceeeE--EeeccccccccceEEEEecccEEEEEecc
Confidence 3211 366788877 444433 3488889999999999977
No 29
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=9e-34 Score=291.23 Aligned_cols=487 Identities=17% Similarity=0.247 Sum_probs=357.8
Q ss_pred CCccccccccccccceeeC-CC-----CCC--cceeecCCCCceEEEEee-cCCCeeEEEEccC--CCeEEEEE-eCCCe
Q 001336 276 GISDEVNNLSVNILPVAYT-PQ-----SLG--QSSYSTDDLPKTVVMTLN-QGSAVKSMDFHPV--QQILLVVG-TNMGD 343 (1097)
Q Consensus 276 ~h~~~v~~l~~~~~~~~~s-~~-----~~~--~~~~~~~~~~~~~~~~~~-h~~~V~~v~fspd--g~~lla~g-s~dg~ 343 (1097)
||++.|-|+..|+...... .+ |+. --+-.+|......++.++ ....|+|++||+- |.+|++.- +.+..
T Consensus 102 GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~ 181 (626)
T KOG2106|consen 102 GHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHM 181 (626)
T ss_pred CCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccc
Confidence 9999999988876433332 11 111 111123444455666666 6789999999984 45454442 34567
Q ss_pred EEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeee
Q 001336 344 VMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE 423 (1097)
Q Consensus 344 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~ 423 (1097)
+.|||++.+..... .+.-+..|....|+|.+..|......+.+.+|+.+++...++...++
T Consensus 182 lSVWdWqk~~~~~~-------------------vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fe 242 (626)
T KOG2106|consen 182 LSVWDWQKKAKLGP-------------------VKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFE 242 (626)
T ss_pred cchhhchhhhccCc-------------------ceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccc
Confidence 89999998776542 23356688999999977766666677889999999998887777776
Q ss_pred ccc-CcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcC
Q 001336 424 AHV-GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD 502 (1097)
Q Consensus 424 ~h~-~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 502 (1097)
+++ ..|.|++|.++|+ ++||..+|.|.||+..+.+..+....|.+.|.+++. -.+| .|++|+.|..|..|| .
T Consensus 243 k~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~--lr~G-tllSGgKDRki~~Wd-~ 315 (626)
T KOG2106|consen 243 KREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCM--LRDG-TLLSGGKDRKIILWD-D 315 (626)
T ss_pred cccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEE--ecCc-cEeecCccceEEecc-c
Confidence 654 5699999999998 899999999999998887777777799999999987 4454 577799999999998 3
Q ss_pred CCCcee--eecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEe
Q 001336 503 NLGSRV--DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG 580 (1097)
Q Consensus 503 ~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 580 (1097)
.-+... ++....+.|+.++-...+ ++.+.. .+.|..=.++++-. ....+|.+ ....++.+|+.+.+++++
T Consensus 316 ~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTt----rN~iL~Gt~~~~f~-~~v~gh~d-elwgla~hps~~q~~T~g 387 (626)
T KOG2106|consen 316 NYRKLRETELPEQFGPIRTVAEGKGD--ILVGTT----RNFILQGTLENGFT-LTVQGHGD-ELWGLATHPSKNQLLTCG 387 (626)
T ss_pred cccccccccCchhcCCeeEEecCCCc--EEEeec----cceEEEeeecCCce-EEEEeccc-ceeeEEcCCChhheeecc
Confidence 333332 333344577776643333 555543 22454444544432 34456665 789999999999999999
Q ss_pred CCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccc
Q 001336 581 DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIV 660 (1097)
Q Consensus 581 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1097)
.|+.+++|+ ..+++.+... ..++.|+.|+|.| .+|.|...|...+.|.++. ..+..-
T Consensus 388 qdk~v~lW~--~~k~~wt~~~---~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~~---------------- 444 (626)
T KOG2106|consen 388 QDKHVRLWN--DHKLEWTKII---EDPAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTIH---------------- 444 (626)
T ss_pred CcceEEEcc--CCceeEEEEe---cCceeEeeccCcc-eEEEeeccceEEEEecccc-eeEEEE----------------
Confidence 999999999 4455544432 4467899999999 9999999999999998764 222111
Q ss_pred cCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCcc
Q 001336 661 KAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAM 740 (1097)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 740 (1097)
....
T Consensus 445 ----------------------------------------------------------------------------~d~~ 448 (626)
T KOG2106|consen 445 ----------------------------------------------------------------------------TDNE 448 (626)
T ss_pred ----------------------------------------------------------------------------ecCC
Confidence 0246
Q ss_pred ceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCE
Q 001336 741 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY 820 (1097)
Q Consensus 741 ~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 820 (1097)
+++++.|+|+|.+|+.++.|+.|.||.+... |..+...-.. +..+|+.+.||+|+++
T Consensus 449 ~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~---------------------g~~y~r~~k~--~gs~ithLDwS~Ds~~ 505 (626)
T KOG2106|consen 449 QLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN---------------------GRKYSRVGKC--SGSPITHLDWSSDSQF 505 (626)
T ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEEECCC---------------------CcEEEEeeee--cCceeEEeeecCCCce
Confidence 7899999999999999999999999987642 2222222222 5589999999999999
Q ss_pred EEEEe-CCeEEEEEcCCCceeEE--------------e----CCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccc-
Q 001336 821 VMSAS-GGKISLFNMMTFKTMTT--------------F----MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD- 880 (1097)
Q Consensus 821 la~~s-dg~i~iwd~~~~~~~~~--------------~----~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~- 880 (1097)
+.+.+ |-.|-.|.....+.+.. | -.+...|..++-+. +.+++|+|...|.|++|...-.
T Consensus 506 ~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~-~~~~lA~gdd~g~v~lf~yPc~s 584 (626)
T KOG2106|consen 506 LVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSH-CEKLLASGDDFGKVHLFSYPCSS 584 (626)
T ss_pred EEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhh-hhhhhhccccCceEEEEccccCC
Confidence 99999 88899995432221111 1 12445577777777 8899999999999999987643
Q ss_pred --eEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 001336 881 --EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST 919 (1097)
Q Consensus 881 --~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~ 919 (1097)
....++.+|++.|++++|.-+..++++.+.|..|..|++
T Consensus 585 ~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 585 PRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred CcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 345678899999999999999999999889999999986
No 30
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=277.80 Aligned_cols=287 Identities=17% Similarity=0.261 Sum_probs=244.7
Q ss_pred CCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEE
Q 001336 330 VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYT 409 (1097)
Q Consensus 330 dg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd 409 (1097)
|..-||++++.|.+|++|...+|.+..+ +.-..+.|+.+...||+++||+++.- .|++||
T Consensus 8 d~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD 67 (311)
T KOG0315|consen 8 DDPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYD 67 (311)
T ss_pred CCceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEE
Confidence 3445889999999999999999998764 33456789999999999999999765 599999
Q ss_pred ccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEE
Q 001336 410 YHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFS 489 (1097)
Q Consensus 410 ~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 489 (1097)
+.++..- +..++.+|.+.|+++.|..||+ +++|||+||+++|||++...+.+.++ |..+|+++..+|. ...|++
T Consensus 68 ~~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpn--QteLis 141 (311)
T KOG0315|consen 68 LNSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPN--QTELIS 141 (311)
T ss_pred ccCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCC--cceEEe
Confidence 9998753 5667999999999999999999 89999999999999999977777776 7799999998654 478999
Q ss_pred EcCCCeEEEEEcCCCCceeeecCCC-CceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC------eeeEEecCCCCc
Q 001336 490 TATDGKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG------AVKRTYHGLGKR 562 (1097)
Q Consensus 490 ~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~------~~~~~~~~~~~~ 562 (1097)
|..+|.|++||+.+..+...+.... ..|.++...|||.+++.+.. .+...+|++-.. +++.+++.|..
T Consensus 142 ~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~- 216 (311)
T KOG0315|consen 142 GDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHNG- 216 (311)
T ss_pred ecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheecccc-
Confidence 9999999999999876666555443 48999999999999998853 556999998764 45667888887
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEE
Q 001336 563 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV-NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLL 641 (1097)
Q Consensus 563 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 641 (1097)
.+..+.+||++++|+++|.|.+++||+.++. +....+. +|...+..++||.||.+|++|+.|+.+++|++..+ +.+
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~--gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v 293 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT--GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEV 293 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee--cCCceEEeeeeccCccEEEecCCCCceeecccccC-cee
Confidence 7888999999999999999999999999988 4444455 55789999999999999999999999999999999 677
Q ss_pred EEecccccc
Q 001336 642 RTVESRTFD 650 (1097)
Q Consensus 642 ~~~~~~~~~ 650 (1097)
+...+|...
T Consensus 294 ~qy~gh~K~ 302 (311)
T KOG0315|consen 294 RQYQGHHKA 302 (311)
T ss_pred eecCCcccc
Confidence 777776543
No 31
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2e-35 Score=301.57 Aligned_cols=315 Identities=19% Similarity=0.325 Sum_probs=263.6
Q ss_pred CCceEEEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEE
Q 001336 308 LPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 387 (1097)
Q Consensus 308 ~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 387 (1097)
.+......++|.++|.+++|+|-..-++++|+.|-+.++|++.......... .++..|... ...-...+..|+++
T Consensus 167 I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q---~~lrh~~~~--~~~s~~~nkdVT~L 241 (524)
T KOG0273|consen 167 IPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ---LVLRHCIRE--GGKSVPSNKDVTSL 241 (524)
T ss_pred ccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh---hhhhhhhhh--hcccCCccCCcceE
Confidence 4556666777999999999999887788999999999999987521111000 000000000 00011234689999
Q ss_pred EEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEee
Q 001336 388 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE 467 (1097)
Q Consensus 388 ~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 467 (1097)
+|+.+|..||+|+.||.++||+...+. +. ++..|.++|.++.|+.+|. +|++++.|+++.+||..+|+..+.+.
T Consensus 242 ~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 242 DWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred EecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEEeee
Confidence 999999999999999999999987654 33 5888999999999999999 89999999999999999999999999
Q ss_pred cCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeC
Q 001336 468 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 547 (1097)
Q Consensus 468 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 547 (1097)
-|..+-.++.|- .+ ..+++++.|+.|+++.+....+...+.+|.++|.++.|.|.|.+|++++.|+ ++++|..
T Consensus 316 ~~s~~~lDVdW~--~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~----TlkiWs~ 388 (524)
T KOG0273|consen 316 FHSAPALDVDWQ--SN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDG----TLKIWSM 388 (524)
T ss_pred eccCCccceEEe--cC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCC----eeEeeec
Confidence 999886667763 33 5799999999999999999999999999999999999999999999998744 7999999
Q ss_pred CCCeeeEEecCCCCcceEEEEEcCCC---------CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCC
Q 001336 548 SEGAVKRTYHGLGKRSVGVVQFDTTK---------NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI 618 (1097)
Q Consensus 548 ~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 618 (1097)
........+..|.. .|..+.|+|.| ..+++++.|++|++||+..+.++..+..| ..+|.+++|+|+|.
T Consensus 389 ~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvafS~~g~ 465 (524)
T KOG0273|consen 389 GQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAFSPNGR 465 (524)
T ss_pred CCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEecCCCc
Confidence 99999999999988 89999999965 47899999999999999999999999866 77999999999999
Q ss_pred EEEEEECCCcEEEEEcCCCceEEEEe
Q 001336 619 LLAVSTNDNGIKILANADGIRLLRTV 644 (1097)
Q Consensus 619 ~l~s~~~dg~i~iw~~~~~~~~~~~~ 644 (1097)
++|+|+.||.|.||+..++ ++.+..
T Consensus 466 ylAsGs~dg~V~iws~~~~-~l~~s~ 490 (524)
T KOG0273|consen 466 YLASGSLDGCVHIWSTKTG-KLVKSY 490 (524)
T ss_pred EEEecCCCCeeEeccccch-heeEee
Confidence 9999999999999999887 444443
No 32
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.5e-34 Score=283.76 Aligned_cols=339 Identities=17% Similarity=0.245 Sum_probs=288.6
Q ss_pred eeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEE
Q 001336 421 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWL 500 (1097)
Q Consensus 421 ~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 500 (1097)
+|..|...|.+++.+|+.+ +++||+.|....+|++.+|..+..+.+|.+.|+++.| +.+|.+|+||+.+|.|++|+
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~F--shdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSF--SHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEE--ccCceEEEecCCCccEEEEE
Confidence 5889999999999999777 8999999999999999999999999999999999998 55679999999999999999
Q ss_pred cCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEe
Q 001336 501 YDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG 580 (1097)
Q Consensus 501 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 580 (1097)
..++.....+......+.=+.|+|.+..|++++.|+ .+++|.+.++...+.+.||.. ++++-.|.|+|+.++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DG----svWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDG----SVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecCCC----cEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 999999998877777899999999999999998755 599999999999999999887 899999999999999999
Q ss_pred CCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccc
Q 001336 581 DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIV 660 (1097)
Q Consensus 581 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1097)
.||+|++||..+++++..+.... .....++.++..+..++.|+.++.+.+-+..++ +.+....+
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e-~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv~~~n~-------------- 273 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAE-GLELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVVNCNNG-------------- 273 (399)
T ss_pred cCceEEEEecCCCceeEEecccc-cCcCCccccccccceeEeccCCccEEEEccccc-eEEEecCC--------------
Confidence 99999999999999999987544 345679999999999999999999988776665 22211110
Q ss_pred cCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCcc
Q 001336 661 KAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAM 740 (1097)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 740 (1097)
T Consensus 274 -------------------------------------------------------------------------------- 273 (399)
T KOG0296|consen 274 -------------------------------------------------------------------------------- 273 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCE
Q 001336 741 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY 820 (1097)
Q Consensus 741 ~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 820 (1097)
.+..+-.... .....|..+.+|..-.+
T Consensus 274 ---------~~~~l~~~~e--------------------------------------------~~~esve~~~~ss~lpL 300 (399)
T KOG0296|consen 274 ---------TVPELKPSQE--------------------------------------------ELDESVESIPSSSKLPL 300 (399)
T ss_pred ---------CCccccccch--------------------------------------------hhhhhhhhcccccccch
Confidence 0000000000 01233445556666778
Q ss_pred EEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEe
Q 001336 821 VMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS 899 (1097)
Q Consensus 821 la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s 899 (1097)
.|+|+ ||+|.|||+...+....+. |...|+.+.|.+ ..+|++++.+|.|+.||.++|+++..+.||...|.+++++
T Consensus 301 ~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls 377 (399)
T KOG0296|consen 301 AACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS 377 (399)
T ss_pred hhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEc
Confidence 88999 9999999998877666665 888899999986 5689999999999999999999999999999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcC
Q 001336 900 NTLNVLVSSGADSQLCVWSTD 920 (1097)
Q Consensus 900 ~dg~~l~s~~~Dg~i~iwd~~ 920 (1097)
|+.++++|+|.|++.+||+..
T Consensus 378 ~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 378 PQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999864
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.9e-34 Score=270.43 Aligned_cols=295 Identities=14% Similarity=0.220 Sum_probs=251.9
Q ss_pred cEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCe--eeEEecCCCCc
Q 001336 485 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA--VKRTYHGLGKR 562 (1097)
Q Consensus 485 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~ 562 (1097)
-+|++++.|.+||+|...++.+...+......|..+.+.|+++.|++++ ...|++||++++. ++.+|.+|..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k- 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK- 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC-
Confidence 5799999999999999999999999999999999999999999999987 4469999999874 6889999987
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEE
Q 001336 563 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLR 642 (1097)
Q Consensus 563 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 642 (1097)
.|.++.|..+|+++++||+||+++|||++...+...++ +..+|+++..+|+...|++|..+|.|++||+.+. ....
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~---~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~ 160 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ---HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCTH 160 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc---CCCCcceEEecCCcceEEeecCCCcEEEEEccCC-cccc
Confidence 89999999999999999999999999999866555554 3578999999999999999999999999998765 1111
Q ss_pred EecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCccccccccccccccccccc
Q 001336 643 TVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEI 722 (1097)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~ 722 (1097)
.+
T Consensus 161 ~l------------------------------------------------------------------------------ 162 (311)
T KOG0315|consen 161 EL------------------------------------------------------------------------------ 162 (311)
T ss_pred cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred CCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCC
Q 001336 723 TEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISD 802 (1097)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 802 (1097)
.| .....|.+++..|||..++++...|...+|++..... .+.......+.
T Consensus 163 ----------iP--e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l~P~~k~~- 212 (311)
T KOG0315|consen 163 ----------IP--EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------------ASELEPVHKFQ- 212 (311)
T ss_pred ----------CC--CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc-----------------cccceEhhhee-
Confidence 01 1346789999999999999999999999999875311 11111111133
Q ss_pred CCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCC-ceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccc
Q 001336 803 TNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTF-KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD 880 (1097)
Q Consensus 803 ~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~ 880 (1097)
.|.+.+..+.+|||+++||+++ |.+++||+.++. +....+++|..-+...+||. |++||++|+.|+.+++|++..+
T Consensus 213 -ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 213 -AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred -cccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccC
Confidence 3999999999999999999999 999999999988 66777899999999999999 9999999999999999999999
Q ss_pred eEEEEecccccCeEEEEEe
Q 001336 881 EVKTKLKGHQKRITGLAFS 899 (1097)
Q Consensus 881 ~~~~~l~~h~~~V~~l~~s 899 (1097)
+.++.+.+|-....+++..
T Consensus 291 k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 291 KEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ceeeecCCcccccEEEEee
Confidence 9999999999888777654
No 34
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.2e-35 Score=317.47 Aligned_cols=276 Identities=17% Similarity=0.295 Sum_probs=239.3
Q ss_pred cCCCCceEEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeee---eeeeE---------eeccccCcc
Q 001336 305 TDDLPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAV---KSFKV---------WELGACSMP 371 (1097)
Q Consensus 305 ~~~~~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~---~~~~~---------~~~~~~~~~ 371 (1097)
.+.++..+.+++. -...++|+.||+|++ ++|.|-.|..|++|.+...++... ..+.- -+.......
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 5567788888888 567899999999999 789999999999999985432110 00000 011112222
Q ss_pred ccccccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCc
Q 001336 372 LQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV 451 (1097)
Q Consensus 372 ~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~ 451 (1097)
.....+.||.++|..+.|+|+.++|++++.|++|++|.+.+..++. .+.||..+|+.+.|+|-|- +++|+|.|++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t 516 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT 516 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence 2333588999999999999999999999999999999999977655 5789999999999999998 8999999999
Q ss_pred EEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEE
Q 001336 452 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFS 531 (1097)
Q Consensus 452 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 531 (1097)
.++|......+++.+.+|-+.|.|+.|+|+. .++++||.|.+||+||..++.....+.+|..+|.+++|||+|++|++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 9999999999999999999999999996655 89999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001336 532 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 593 (1097)
Q Consensus 532 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 593 (1097)
++.+ +.|.+||+.+++++..+.+|.+ .|.++.|+.+|..|++||.|.+|++||+..-
T Consensus 595 g~ed----~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 595 GDED----GLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cccC----CcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9764 4699999999999999999965 9999999999999999999999999998653
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-35 Score=291.44 Aligned_cols=292 Identities=19% Similarity=0.319 Sum_probs=264.1
Q ss_pred ceEEEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEE
Q 001336 310 KTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 389 (1097)
Q Consensus 310 ~~~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 389 (1097)
.......+|...|+.+-|+|+-. +.++++.|++|++||..+++.... +.||++.|..|+|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~ 158 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISF 158 (406)
T ss_pred CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEE
Confidence 34444455999999999999987 678999999999999999998654 8999999999999
Q ss_pred ccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecC
Q 001336 390 SPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH 469 (1097)
Q Consensus 390 spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 469 (1097)
+..|++||+++.|-.+++||..+. ..+...+.+|...|.++.|-|.|. ++++++.|.+|+.|++.+|.++++|.+|
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred ecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence 999999999999999999999863 334446889999999999999998 8999999999999999999999999999
Q ss_pred CcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCC---------------CEEEEeee
Q 001336 470 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG---------------ARLFSCGT 534 (1097)
Q Consensus 470 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~---------------~~l~~~~~ 534 (1097)
...|..+.. ..||.++++++.|.++++|-+.++.++..+..|.++|.+++|.|.. .++.+++.
T Consensus 235 ~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr 312 (406)
T KOG0295|consen 235 SEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR 312 (406)
T ss_pred hHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence 999999877 7788999999999999999999999999999999999999997632 35666654
Q ss_pred CCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEc
Q 001336 535 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN 614 (1097)
Q Consensus 535 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 614 (1097)
+.+|++||+.++.++.++.+|.+ .|..++|+|.|+||+++.+|+++++||+.+++++..+..|. .-|++++|+
T Consensus 313 ----DktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~--hfvt~lDfh 385 (406)
T KOG0295|consen 313 ----DKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHE--HFVTSLDFH 385 (406)
T ss_pred ----cceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCc--ceeEEEecC
Confidence 55799999999999999999998 99999999999999999999999999999999999999774 478999999
Q ss_pred CCCCEEEEEECCCcEEEEEc
Q 001336 615 KEGILLAVSTNDNGIKILAN 634 (1097)
Q Consensus 615 ~~~~~l~s~~~dg~i~iw~~ 634 (1097)
.+..++++|+-|.++++|.-
T Consensus 386 ~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCceEEeccccceeeeeec
Confidence 99999999999999999963
No 36
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2e-34 Score=294.34 Aligned_cols=319 Identities=18% Similarity=0.232 Sum_probs=272.1
Q ss_pred CcCCCccccccccccccceeeCCCCC-CcceeecCCCCc----------------------eEEEEeecCCCeeEEEEcc
Q 001336 273 RPFGISDEVNNLSVNILPVAYTPQSL-GQSSYSTDDLPK----------------------TVVMTLNQGSAVKSMDFHP 329 (1097)
Q Consensus 273 ~~~~h~~~v~~l~~~~~~~~~s~~~~-~~~~~~~~~~~~----------------------~~~~~~~h~~~V~~v~fsp 329 (1097)
+..+|..||. +.+|+|... .+++++.+...+ ...........|++++|+.
T Consensus 173 kvl~~~~~V~-------~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~ 245 (524)
T KOG0273|consen 173 KVLRHESEVF-------ICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN 245 (524)
T ss_pred eeccCCCceE-------EEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC
Confidence 4446888776 677888766 455554443211 0112222457899999999
Q ss_pred CCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEE
Q 001336 330 VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYT 409 (1097)
Q Consensus 330 dg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd 409 (1097)
+|. +||+|+.||.++||+...+... .+..|.++|.++.|+.+|.||++++.|+++.+||
T Consensus 246 ~G~-~LatG~~~G~~riw~~~G~l~~--------------------tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd 304 (524)
T KOG0273|consen 246 DGT-LLATGSEDGEARIWNKDGNLIS--------------------TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWD 304 (524)
T ss_pred CCC-eEEEeecCcEEEEEecCchhhh--------------------hhhccCCceEEEEEcCCCCEEEeccCCccEEEEe
Confidence 999 6799999999999998765432 2778999999999999999999999999999999
Q ss_pred ccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEE
Q 001336 410 YHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFS 489 (1097)
Q Consensus 410 ~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 489 (1097)
..+|.... .+.-|..+-..+.|-.+.. +++++.|+.|+|+-+...+++.++.+|.++|.++.| ++.|.+|++
T Consensus 305 ~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~--n~tg~LLaS 376 (524)
T KOG0273|consen 305 AHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKW--NPTGSLLAS 376 (524)
T ss_pred ccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEE--CCCCceEEE
Confidence 99987544 3566888878899987775 999999999999999999999999999999999999 556699999
Q ss_pred EcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCC---------EEEEeeeCCCCCceEEEEeCCCCeeeEEecCCC
Q 001336 490 TATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGA---------RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG 560 (1097)
Q Consensus 490 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~---------~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 560 (1097)
++.|++++||.+........+..|...|..+.|+|.|. .+++++. +.+|++||...+.++.+|..|+
T Consensus 377 ~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~gv~i~~f~kH~ 452 (524)
T KOG0273|consen 377 CSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVESGVPIHTLMKHQ 452 (524)
T ss_pred ecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccCCceeEeeccCC
Confidence 99999999999998888899999999999999999663 5777765 4479999999999999999998
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001336 561 KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 561 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~ 635 (1097)
. +|.+++|+|+|+++++|+.||.|.+|+..++++++.+.. ...|..++|+.+|.+|..+-.|+.+.+.|+.
T Consensus 453 ~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~---~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 453 E-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG---TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred C-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC---CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 7 999999999999999999999999999999999999875 3458999999999999999999999998864
No 37
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=285.15 Aligned_cols=293 Identities=17% Similarity=0.262 Sum_probs=262.1
Q ss_pred ceEEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEE
Q 001336 310 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 388 (1097)
Q Consensus 310 ~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 388 (1097)
-++.+.+. |.+.|.|+++.|-+++ +++|+.|++|.|||+.+|++..+ +.||-..|..++
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~w-f~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~va 200 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEW-FATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRGVA 200 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCcee-EEecCCCceeEEEEcccCeEEEe-------------------ecchhheeeeee
Confidence 34455565 9999999999999885 59999999999999999998764 889999999999
Q ss_pred EccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeec
Q 001336 389 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 468 (1097)
Q Consensus 389 ~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 468 (1097)
+|+-..||++++.|+.|+-||++..+.++ .+.||-..|.|++..|.-. .|+||+.|.++++||+++...+..+.|
T Consensus 201 vS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 201 VSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred ecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEecC
Confidence 99999999999999999999999988766 4789999999999999988 899999999999999999999999999
Q ss_pred CCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCC
Q 001336 469 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 548 (1097)
Q Consensus 469 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 548 (1097)
|..+|.++.+.+.. ..+++|+.|++|++||+..++....+..|...+.+++.+|....+++++.| .|+-|++.
T Consensus 276 H~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-----nik~w~~p 348 (460)
T KOG0285|consen 276 HTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-----NIKQWKLP 348 (460)
T ss_pred CCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-----cceeccCC
Confidence 99999999885443 579999999999999999999999999999999999999999999999865 39999999
Q ss_pred CCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEec---C---CCCCCcceEEEcCCCCEEEE
Q 001336 549 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA---D---GGLQASPCIRFNKEGILLAV 622 (1097)
Q Consensus 549 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~~~~~v~~v~~s~~~~~l~s 622 (1097)
.|..+..+.+|.. .+.+++...|+ ++++|+++|.+.+||.++|...+.... . .....|.+.+|...|..|++
T Consensus 349 ~g~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit 426 (460)
T KOG0285|consen 349 EGEFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLIT 426 (460)
T ss_pred ccchhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEe
Confidence 9999999999887 88999988775 899999999999999999876665521 1 12346889999999999999
Q ss_pred EECCCcEEEEEcCC
Q 001336 623 STNDNGIKILANAD 636 (1097)
Q Consensus 623 ~~~dg~i~iw~~~~ 636 (1097)
|..|.+|++|.-..
T Consensus 427 ~eadKtIk~~keDe 440 (460)
T KOG0285|consen 427 GEADKTIKMYKEDE 440 (460)
T ss_pred ccCCcceEEEeccc
Confidence 99999999997544
No 38
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.5e-33 Score=275.30 Aligned_cols=329 Identities=16% Similarity=0.199 Sum_probs=277.1
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 456 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 456 (1097)
|..|++.|.+++.+|+.+++|+|+.|....+|++.+|.... .+.+|...|+++.||.||. +|+||+.+|.|+||.
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFK 134 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEE
Confidence 78899999999999999999999999999999999998544 5889999999999999999 899999999999999
Q ss_pred CCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCC
Q 001336 457 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 536 (1097)
Q Consensus 457 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 536 (1097)
..+|.....+...-+.+.-+.|+|. +.+|+.|+.||.+.+|.+.+......+.+|..++++=.|.|+|++++++..|+
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~--a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg 212 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPR--AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDG 212 (399)
T ss_pred cccCceEEEeecccCceEEEEeccc--ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCc
Confidence 9999998888766777888999774 48999999999999999998878888889999999999999999999998644
Q ss_pred CCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC------CCCCCcce
Q 001336 537 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD------GGLQASPC 610 (1097)
Q Consensus 537 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~ 610 (1097)
+|++||+.+++++.++.+.......++.++..+..++.|+.++.+++-+..+|+.+....+. .+...+.|
T Consensus 213 ----ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 213 ----TIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred ----eEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 79999999999999998776667888999999999999999999999999999988776531 11122233
Q ss_pred EEE---cCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCcccccccccccccccc
Q 001336 611 IRF---NKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAA 687 (1097)
Q Consensus 611 v~~---s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1097)
+.+ +..-.+.|+|+-||+|.|||+...
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-------------------------------------------------- 318 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAAS-------------------------------------------------- 318 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccc--------------------------------------------------
Confidence 333 334455666666666666665432
Q ss_pred ccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEec
Q 001336 688 AMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 767 (1097)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~ 767 (1097)
T Consensus 319 -------------------------------------------------------------------------------- 318 (399)
T KOG0296|consen 319 -------------------------------------------------------------------------------- 318 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCC
Q 001336 768 WPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPP 846 (1097)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~ 846 (1097)
+ +... . .|...|..+.|-+ ..+|++++ +|+|+.||.++|+++.++.+|
T Consensus 319 ----~----------------------~R~~-c---~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH 367 (399)
T KOG0296|consen 319 ----T----------------------LRHI-C---EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGH 367 (399)
T ss_pred ----h----------------------hhee-c---cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecC
Confidence 0 0000 0 1777888999988 56666666 999999999999999999999
Q ss_pred CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcc
Q 001336 847 PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVR 878 (1097)
Q Consensus 847 ~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~ 878 (1097)
...|.+++++| +++++++++.|++.+||+..
T Consensus 368 ~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 368 QMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred chheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 99999999999 89999999999999999864
No 39
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2e-33 Score=271.32 Aligned_cols=286 Identities=16% Similarity=0.237 Sum_probs=249.2
Q ss_pred EeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCC
Q 001336 315 TLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT 394 (1097)
Q Consensus 315 ~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~ 394 (1097)
..+|++.|+.+.|+|+|.+ +|+|+.|..|.+|++.....-. -++++|.++|..+.|.+|++
T Consensus 43 l~gh~geI~~~~F~P~gs~-~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d~s 103 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSC-FASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRDGS 103 (338)
T ss_pred cCCCcceEEEEEECCCCCe-EeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccCCC
Confidence 3449999999999999995 6999999999999976443211 13779999999999999999
Q ss_pred EEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeE
Q 001336 395 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 474 (1097)
Q Consensus 395 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~ 474 (1097)
.|++++.|.+|+.||+++|++.++ +.+|..-|.++.-+.-|.. ++.|++.|+++++||+++..+++++. ....++
T Consensus 104 ~i~S~gtDk~v~~wD~~tG~~~rk---~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqlt 178 (338)
T KOG0265|consen 104 HILSCGTDKTVRGWDAETGKRIRK---HKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLT 178 (338)
T ss_pred EEEEecCCceEEEEecccceeeeh---hccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeEE
Confidence 999999999999999999998774 7789999999997666766 78999999999999999999988885 456788
Q ss_pred EEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC----
Q 001336 475 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG---- 550 (1097)
Q Consensus 475 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~---- 550 (1097)
+++| ...+..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++.+.+.| .++++||.+-.
T Consensus 179 Av~f--~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd----~tvrvwd~rp~~p~~ 252 (338)
T KOG0265|consen 179 AVGF--KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMD----NTVRVWDVRPFAPSQ 252 (338)
T ss_pred EEEe--cccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccccc----ceEEEEEecccCCCC
Confidence 8888 5555789999999999999999999999999999999999999999999998874 47999998753
Q ss_pred eeeEEecCCCC---cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCC
Q 001336 551 AVKRTYHGLGK---RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 627 (1097)
Q Consensus 551 ~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg 627 (1097)
+++..+.++.- .....++|+|++..+-+|+.|..+++||......+..+.+| ...|++++|+|....|.+++.|.
T Consensus 253 R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh--~gsvn~~~Fhp~e~iils~~sdk 330 (338)
T KOG0265|consen 253 RCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH--YGSVNEVDFHPTEPIILSCSSDK 330 (338)
T ss_pred ceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc--ceeEEEeeecCCCcEEEEeccCc
Confidence 56778877642 13446799999999999999999999999999999999866 77999999999999999999999
Q ss_pred cEEEE
Q 001336 628 GIKIL 632 (1097)
Q Consensus 628 ~i~iw 632 (1097)
+|++=
T Consensus 331 ~i~lg 335 (338)
T KOG0265|consen 331 TIYLG 335 (338)
T ss_pred eeEee
Confidence 98873
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.5e-32 Score=293.52 Aligned_cols=476 Identities=14% Similarity=0.203 Sum_probs=334.7
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 456 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 456 (1097)
+...+..|..++|+|...+++++-..|.|++||++-+.++. .+..|.++|..++|+|++. +++||+.|..|++|+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 45567899999999999999999999999999999988776 4889999999999999999 899999999999999
Q ss_pred CCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCC
Q 001336 457 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 536 (1097)
Q Consensus 457 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 536 (1097)
.++.+|+.++.||-+.|..+.|++.- .+|+++|+|.+|+||++.+.++...+.+|.+-|.|..|+|....+++++.|.
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQ 157 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQ 157 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccc
Confidence 99999999999999999999997655 7999999999999999999999999999999999999999999999998754
Q ss_pred CCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCC
Q 001336 537 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 616 (1097)
Q Consensus 537 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 616 (1097)
+|++||+..-+....-.+.-....... + ++.=+.|+.|-.| ...+. +|...|+-++|+|.
T Consensus 158 ----TVRVWDisGLRkk~~~pg~~e~~~~~~---~-~~~dLfg~~DaVV----------K~VLE--GHDRGVNwaAfhpT 217 (1202)
T KOG0292|consen 158 ----TVRVWDISGLRKKNKAPGSLEDQMRGQ---Q-GNSDLFGQTDAVV----------KHVLE--GHDRGVNWAAFHPT 217 (1202)
T ss_pred ----eEEEEeecchhccCCCCCCchhhhhcc---c-cchhhcCCcCeee----------eeeec--ccccccceEEecCC
Confidence 699999875433222222100000000 0 0000112222222 23445 44778999999999
Q ss_pred CCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCC
Q 001336 617 GILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDS 696 (1097)
Q Consensus 617 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1097)
-.+|++|++|+.|++|.+...
T Consensus 218 lpliVSG~DDRqVKlWrmnet----------------------------------------------------------- 238 (1202)
T KOG0292|consen 218 LPLIVSGADDRQVKLWRMNET----------------------------------------------------------- 238 (1202)
T ss_pred cceEEecCCcceeeEEEeccc-----------------------------------------------------------
Confidence 999999999999999987543
Q ss_pred CCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCcc
Q 001336 697 RNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNST 776 (1097)
Q Consensus 697 ~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~ 776 (1097)
+.|++++ ..+|.+.|.++.|+|....+++.+.|++|+|||++.++.
T Consensus 239 ------------------KaWEvDt-------------crgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~--- 284 (1202)
T KOG0292|consen 239 ------------------KAWEVDT-------------CRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS--- 284 (1202)
T ss_pred ------------------cceeehh-------------hhcccCCcceEEecCccceeEecCCCccEEEEecccccc---
Confidence 2355442 135999999999999999999999999999998874311
Q ss_pred CccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEcCCCceeEEeCCCCCCeEEEEEe
Q 001336 777 GKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFH 856 (1097)
Q Consensus 777 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 856 (1097)
+.. ++. ..+.-+.++.+|..+++|.|.|+.+.+|.++.-++. . +.+
T Consensus 285 -------------------v~t-frr--endRFW~laahP~lNLfAAgHDsGm~VFkleRErpa----------~--~v~ 330 (1202)
T KOG0292|consen 285 -------------------VQT-FRR--ENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPA----------Y--AVN 330 (1202)
T ss_pred -------------------eee-eec--cCCeEEEEEecCCcceeeeecCCceEEEEEcccCce----------E--EEc
Confidence 111 111 467788999999999999999988888887543322 2 222
Q ss_pred CCCCCEEEEEECCCcEEEEEcccce--EEEEeccc---ccCeEEEEEecCCCEEEEE-eC-CCcEEEEEcCCCcccceee
Q 001336 857 PQDNNIIAIGMEDSSIQIYNVRVDE--VKTKLKGH---QKRITGLAFSNTLNVLVSS-GA-DSQLCVWSTDGWEKQASKF 929 (1097)
Q Consensus 857 p~~~~~la~g~~dg~v~vwd~~~~~--~~~~l~~h---~~~V~~l~~s~dg~~l~s~-~~-Dg~i~iwd~~~~~~~~~~~ 929 (1097)
++.++.+ - |..|+-+|+.+.+ .+..++.. ..++.++.++|....+..+ .. .|..-++.+..........
T Consensus 331 --~n~LfYv-k-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~ 406 (1202)
T KOG0292|consen 331 --GNGLFYV-K-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDG 406 (1202)
T ss_pred --CCEEEEE-c-cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCc
Confidence 3434443 3 8999999998754 33444433 3678899999876554444 33 3444455544321110000
Q ss_pred EeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEE
Q 001336 930 LTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVG 1008 (1097)
Q Consensus 930 ~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~ 1008 (1097)
..... +.-....|-...++.+.. .+.++.+=++.+... +.+.. ...+..+-+..+|.+|+.. ...|.
T Consensus 407 ~~~~k------~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vt-kkl~~---~~~~~~IF~ag~g~lll~~--~~~v~ 474 (1202)
T KOG0292|consen 407 KDVKK------GTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVT-KKLLL---PESTDDIFYAGTGNLLLRS--PDSVT 474 (1202)
T ss_pred hhhhc------CCCCceEEEEecceEEEEecCcceEEecccchhh-hcccC---cccccceeeccCccEEEEc--CCeEE
Confidence 00000 111122333333333332 355555555543322 22221 2355667777777776643 45699
Q ss_pred EEeCCCCceeeeeC
Q 001336 1009 VLTASTLRLRCRIN 1022 (1097)
Q Consensus 1009 vwd~~~~~~~~~~~ 1022 (1097)
+||++..+....+.
T Consensus 475 lfdvQq~~~~~si~ 488 (1202)
T KOG0292|consen 475 LFDVQQKKKVGSIK 488 (1202)
T ss_pred EEEeecceEEEEEe
Confidence 99999888776666
No 41
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-32 Score=260.10 Aligned_cols=291 Identities=21% Similarity=0.339 Sum_probs=237.6
Q ss_pred EEEEee-cCCCeeEEEEccC-CCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEE
Q 001336 312 VVMTLN-QGSAVKSMDFHPV-QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 389 (1097)
Q Consensus 312 ~~~~~~-h~~~V~~v~fspd-g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 389 (1097)
.++++. |.+.|..++|+|- |. +||+++.|..|+||+...+.....++ .+-.+|+..|.+++|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~---------------vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCKT---------------VLDDGHKRSVRSVAW 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEEEE---------------eccccchheeeeeee
Confidence 344555 8899999999999 76 78999999999999998643322111 124689999999999
Q ss_pred ccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC---ceeEEe
Q 001336 390 SPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG---TKQYIF 466 (1097)
Q Consensus 390 spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~---~~~~~~ 466 (1097)
+|.|++||+|+.|.++.||.-..++ +....+++||...|.|++|+++|. +|+||+.|++|-||.+..+ +++..+
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 9999999999999999999887655 666778999999999999999999 8999999999999998744 577899
Q ss_pred ecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCC---CCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEE
Q 001336 467 EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN---LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 543 (1097)
Q Consensus 467 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 543 (1097)
++|...|..+.|+|.. .+|++++.|++|++|+-.. -.+...+..+...|.+++|++.|..|++++.| .+++
T Consensus 147 ~~HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD----~tv~ 220 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD----GTVS 220 (312)
T ss_pred ccccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCC----cceE
Confidence 9999999999998877 6899999999999997663 23466677788899999999999999999764 4699
Q ss_pred EEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------eEEEEecCCCCCCcceEEEcCC-
Q 001336 544 EWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN------LLASIDADGGLQASPCIRFNKE- 616 (1097)
Q Consensus 544 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~~- 616 (1097)
+|-.. ..+.+.+...++.+.|. ...|++++.|+.|++|.-...- ++.. ..+.|...|++++|+|.
T Consensus 221 Iw~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~dVNsV~w~p~~ 292 (312)
T KOG0645|consen 221 IWRLY-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEVDVNSVQWNPKV 292 (312)
T ss_pred eeeec-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh-hhcccccccceEEEcCCC
Confidence 99755 23334444478889998 4589999999999999766421 1111 12244668999999994
Q ss_pred CCEEEEEECCCcEEEEEcC
Q 001336 617 GILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 617 ~~~l~s~~~dg~i~iw~~~ 635 (1097)
..+|+++++||.|++|.+.
T Consensus 293 ~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCceeecCCCceEEEEEec
Confidence 6899999999999999864
No 42
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1e-34 Score=291.18 Aligned_cols=284 Identities=20% Similarity=0.327 Sum_probs=250.2
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
-+..|..|.|.|+|++| ++|+..|.+.+|+..+- +| ..++..|.+.|.++.||++|.+++
T Consensus 95 vkc~V~~v~WtPeGRRL-ltgs~SGEFtLWNg~~f------nF-------------EtilQaHDs~Vr~m~ws~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRL-LTGSQSGEFTLWNGTSF------NF-------------ETILQAHDSPVRTMKWSHNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCcee-EeecccccEEEecCcee------eH-------------HHHhhhhcccceeEEEccCCCEEE
Confidence 35689999999999986 79999999999997331 11 113778999999999999999999
Q ss_pred EEECCCEEEEEEccCCeeeeeeeeeeccc-CcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEE
Q 001336 398 VAYSKHIVHLYTYHGGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 476 (1097)
Q Consensus 398 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 476 (1097)
+|+.+|.|++|+..-.. ++ .+.+|. ..|.+++|||++. .++||+.||+|+|||....+.-..+.||.-.|.++
T Consensus 155 SgD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred EcCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 99999999999987543 22 244454 8999999999888 79999999999999999999889999999999999
Q ss_pred eecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEe
Q 001336 477 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY 556 (1097)
Q Consensus 477 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 556 (1097)
.|+|.. .+|+++|.|+.|++||.+++.++..+..|...|..+.|++++++|++++.| ..++++|+++.+.++.+
T Consensus 229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD----~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKD----QSCKVFDIRTMKELFTY 302 (464)
T ss_pred ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCC----ceEEEEehhHhHHHHHh
Confidence 998766 689999999999999999999999999999999999999999999999864 46999999999999999
Q ss_pred cCCCCcceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001336 557 HGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 557 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~ 635 (1097)
++|.. .+.++.|+|-. ..|.+|+.||.|..|.+...+++..+.. .|...|.+++|+|-|..|++|+.|.++++|.-.
T Consensus 303 r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 303 RGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred hcchh-hheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99998 89999999965 5677788999999999987777766643 567899999999999999999999999999743
No 43
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-29 Score=271.56 Aligned_cols=547 Identities=14% Similarity=0.146 Sum_probs=387.5
Q ss_pred CCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecc-cCcEEEEEEecCCCcEEEEEEeCCCcEEEEECC
Q 001336 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAH-VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 458 (1097)
Q Consensus 380 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~ 458 (1097)
...+|.++|||.+.+.||.+-.||.|.||++..+=.... .+.++ ...|.+++|++.++ |.+.+.+|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEecc
Confidence 456999999999999999999999999999998643332 35554 46799999996665 9999999999999999
Q ss_pred CCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceee--ecCCCCceEEEEEccCCCEEEEeeeCC
Q 001336 459 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD--YDAPGHSSTMMAYSADGARLFSCGTNK 536 (1097)
Q Consensus 459 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~~~ 536 (1097)
+++.++.+....+.|++++.++.. ..++.|++||.+..++...+..... +....+.+.++.|+|++..++.|+.|
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D- 175 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID- 175 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC-
Confidence 999999999999999999996655 6899999999877777766555443 33345689999999999999999864
Q ss_pred CCCceEEEEeCCCCeeeEEec-------CCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcc
Q 001336 537 EGESYLVEWNESEGAVKRTYH-------GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASP 609 (1097)
Q Consensus 537 ~~~~~i~~wd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 609 (1097)
+.|++||..++..+.... .....-|+++.|-.+ ..|++|..-|+|.+||...+.+++....| ...|.
T Consensus 176 ---g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h--~adVl 249 (691)
T KOG2048|consen 176 ---GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCH--DADVL 249 (691)
T ss_pred ---ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhh--hccee
Confidence 479999999987665221 112235677777755 48999999999999999999999999877 67899
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCcccccccccccccccccc
Q 001336 610 CIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAM 689 (1097)
Q Consensus 610 ~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1097)
+++.++++.++++++.|+.|.-+...++...
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~------------------------------------------------- 280 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSE------------------------------------------------- 280 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccc-------------------------------------------------
Confidence 9999999999999999999888876654211
Q ss_pred ccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccC
Q 001336 690 VGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWP 769 (1097)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~ 769 (1097)
|-. ..+...|...|+++++.++ .+++|+.|..+.+-...
T Consensus 281 ---------------------------wv~------------~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 281 ---------------------------WVI------------NSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSR 319 (691)
T ss_pred ---------------------------eee------------eccccCCcccceeeeeecc--eEEecceeeEEEEcccc
Confidence 110 0111347888999999888 79999999988874332
Q ss_pred CCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEcCCCc---------ee
Q 001336 770 RNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFK---------TM 840 (1097)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~---------~~ 840 (1097)
..+ ..... +.... .... -+...+..++++.-....+.+|.+.+.- +.
T Consensus 320 ~~~-----------------~~~h~-~~~~~----p~~~--~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Ll 375 (691)
T KOG2048|consen 320 EFK-----------------NMDHR-QKNLF----PASD--RVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLL 375 (691)
T ss_pred ccC-----------------chhhh-ccccc----cccc--eeecCccceEEEEeccccccceeccCcccccccChhhhe
Confidence 100 00000 00000 1111 1333455555555557888899886541 22
Q ss_pred EEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEE--EE---ecccccCeEEEEEecCCCEEEEEe-CCCcE
Q 001336 841 TTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK--TK---LKGHQKRITGLAFSNTLNVLVSSG-ADSQL 914 (1097)
Q Consensus 841 ~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~--~~---l~~h~~~V~~l~~s~dg~~l~s~~-~Dg~i 914 (1097)
+........|.|.+.|| +|+++|.+. -..++||.+.....+ .. ...-.-....+.|+-|+..++.++ .+..+
T Consensus 376 kl~~k~~~nIs~~aiSP-dg~~Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~l 453 (691)
T KOG2048|consen 376 KLFTKEKENISCAAISP-DGNLIAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSL 453 (691)
T ss_pred eeecCCccceeeeccCC-CCCEEEEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEeccccee
Confidence 22333456799999999 999999887 345888888652222 11 122334567889999999888888 66778
Q ss_pred EEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-EeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEe-
Q 001336 915 CVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYS- 992 (1097)
Q Consensus 915 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s- 992 (1097)
.+.++++........++.. .....|..+..|+||+|||+ +..+.|.+|++++++...... .-...|+.++|+
T Consensus 454 e~~el~~ps~kel~~~~~~----~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~--rln~~vTa~~~~~ 527 (691)
T KOG2048|consen 454 EEFELETPSFKELKSIQSQ----AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV--RLNIDVTAAAFSP 527 (691)
T ss_pred EEEEecCcchhhhhccccc----cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh--ccCcceeeeeccc
Confidence 8888776543222211111 12267999999999999999 689999999999887655442 224789999999
Q ss_pred cCCCEEEEEecCCeEEEEeCCCCceeeeeCCC--CcCCCC---CCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCC
Q 001336 993 CDSQSIYVAFEEGSVGVLTASTLRLRCRINPT--AYLPTN---PSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1066 (1097)
Q Consensus 993 ~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~--~~~~~~---h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~ 1066 (1097)
++-..|+.+..|+.|.-||++..+ +.+.... ..+|.. -...+.. +.|+|.+...++. -..+.+.+.|.+.
T Consensus 528 ~~~~~lvvats~nQv~efdi~~~~-l~~ws~~nt~nlpk~~~~l~~~~~g--isfd~~n~s~~~~-~~a~w~~~id~~~ 602 (691)
T KOG2048|consen 528 FVRNRLVVATSNNQVFEFDIEARN-LTRWSKNNTRNLPKEPKTLIPGIPG--ISFDPKNSSRFIV-YDAHWSCLIDFSL 602 (691)
T ss_pred cccCcEEEEecCCeEEEEecchhh-hhhhhhccccccccChhhcCCCCce--EEeCCCCccEEEE-EcCcEEEEEecCC
Confidence 566679999999999999995433 2221100 122222 1122333 4777766555554 3344566766653
No 44
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=266.24 Aligned_cols=251 Identities=18% Similarity=0.312 Sum_probs=217.6
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001336 376 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 455 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 455 (1097)
.+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... .....+++|++.|..+.|.+|+. .+++++.|.+|+.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence 478999999999999999999999999999999976532 34446889999999999999999 89999999999999
Q ss_pred ECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeC
Q 001336 456 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 535 (1097)
Q Consensus 456 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 535 (1097)
|+++|++++.+++|..-|+++... ..+-.++.+++.|+++++||++.......++. ..+++++.|..++..+.+++-|
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred ecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeecccc
Confidence 999999999999999999998742 22335778899999999999998776665532 4489999999999999999986
Q ss_pred CCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC----CceEEEEecCCCCCC--cc
Q 001336 536 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN----VNLLASIDADGGLQA--SP 609 (1097)
Q Consensus 536 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~--v~ 609 (1097)
+ .|++||++.+.....+.||.+ .|+.+..+++|.++.+-+.|.++++||++. .+++..+.++.|.-. ..
T Consensus 196 n----~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 196 N----DIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred C----ceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 5 499999999999999999998 999999999999999999999999999874 344777766544333 44
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 610 CIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 610 ~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
.++|+|++..+.+|+.|..+++||....
T Consensus 271 ~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 271 KCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred eeeccCCCCccccccccceEEEeecccc
Confidence 7899999999999999999999997654
No 45
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.4e-32 Score=311.59 Aligned_cols=286 Identities=20% Similarity=0.348 Sum_probs=250.7
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCc--eeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE--RIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 395 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 395 (1097)
+...|+++.|+|+|++ +++++.|+.+++|+....+ .+. .+.+|...|.+++|+||+++
T Consensus 158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence 4789999999999997 6899999999999997665 222 25789999999999999999
Q ss_pred EEEEECCCEEEEEEcc-CCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeE
Q 001336 396 FGVAYSKHIVHLYTYH-GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 474 (1097)
Q Consensus 396 las~~~dg~i~iwd~~-~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~ 474 (1097)
+++|+.|++|+|||+. .+..++ ++.+|...|++++|+|+++ ++++|+.|++|+|||+++++++..+.+|.+.|.
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 9999999999999994 434444 6889999999999999997 899999999999999999999999999999999
Q ss_pred EEeecccCCccEEEEEcCCCeEEEEEcCCCCc--eeeecCCCC--ceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC
Q 001336 475 SICPHHKENIQFIFSTATDGKIKAWLYDNLGS--RVDYDAPGH--SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 550 (1097)
Q Consensus 475 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 550 (1097)
+++| .+++.+|++++.|+.|++||+.++.. ...+..+.. .++.+.|+|+++++++++.++ .+++||+..+
T Consensus 293 ~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~----~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR----TLKLWDLRSG 366 (456)
T ss_pred EEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC----eEEEEEccCC
Confidence 9998 66779999999999999999998883 344444433 589999999999999998644 6999999999
Q ss_pred eeeEEecCCCCc--ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEE--CC
Q 001336 551 AVKRTYHGLGKR--SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST--ND 626 (1097)
Q Consensus 551 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--~d 626 (1097)
.....+.+|... .+.....++.+.++++|+.|+.|++||..++..+..+.+|. ...+..++++|...++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999999874 33444567889999999999999999999999999998765 66789999999999999998 78
Q ss_pred CcEEEEEcC
Q 001336 627 NGIKILANA 635 (1097)
Q Consensus 627 g~i~iw~~~ 635 (1097)
+.+++|...
T Consensus 446 ~~~~~w~~~ 454 (456)
T KOG0266|consen 446 GLIRLWKYD 454 (456)
T ss_pred ceEEEecCC
Confidence 999999753
No 46
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.1e-32 Score=256.40 Aligned_cols=293 Identities=17% Similarity=0.208 Sum_probs=238.8
Q ss_pred CcCccceEEEEEccC-CceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEE
Q 001336 736 NLTAMRVSRLIYTNS-GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFAL 814 (1097)
Q Consensus 736 ~~~~~~i~~l~~spd-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~ 814 (1097)
.+|.+++..++|+|- |..|++++.|..|++|+.... .+-.+.. .+.+ +|...|+.++|
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-------------------~s~~ck~-vld~-~hkrsVRsvAw 69 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-------------------DSWTCKT-VLDD-GHKRSVRSVAW 69 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC-------------------CcEEEEE-eccc-cchheeeeeee
Confidence 458889999999999 999999999999999976521 1111111 1222 49999999999
Q ss_pred ccCCCEEEEEe-CCeEEEEEcC--CCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccc---eEEEEecc
Q 001336 815 SKNDSYVMSAS-GGKISLFNMM--TFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD---EVKTKLKG 888 (1097)
Q Consensus 815 s~dg~~la~~s-dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~---~~~~~l~~ 888 (1097)
+|.|++||+++ |.++.||.-. +.+++.++++|..+|.|++|++ +|.+||+++.|+.|-||.+..+ ++...++.
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 99999999999 9999999765 4578999999999999999999 9999999999999999999854 67889999
Q ss_pred cccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-EeCCeEEEEe
Q 001336 889 HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYE 967 (1097)
Q Consensus 889 h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~~d~~v~vwd 967 (1097)
|+..|..+.|+|...+|+|++.|.+|++|.-.. ...+.+.+...++. ..|-+++|++.|..|++ +.|++|+||.
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~--dddW~c~~tl~g~~---~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED--DDDWECVQTLDGHE---NTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecC--CCCeeEEEEecCcc---ceEEEEEecCCCceEEEecCCcceEeee
Confidence 999999999999999999999999999998774 22366777788877 46999999999988888 5889999998
Q ss_pred CCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCC
Q 001336 968 APKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDP 1047 (1097)
Q Consensus 968 ~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~ 1047 (1097)
.-+. +. ..|+..+..+.|. ...|++++.|+.|++|.-...-.-..+..-......|...|+++ .|.|...
T Consensus 224 ~~~~-----~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV--~w~p~~~ 293 (312)
T KOG0645|consen 224 LYTD-----LS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV--QWNPKVS 293 (312)
T ss_pred eccC-----cc-hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceE--EEcCCCC
Confidence 6521 11 2578899999998 45899999999999998764311111111111223588888877 8999668
Q ss_pred CEEEEEecCCcEEEEecC
Q 001336 1048 NQFALGLTDGGVYIIEPL 1065 (1097)
Q Consensus 1048 ~~l~s~~~Dg~v~~W~~~ 1065 (1097)
.+|++|+.||.|++|.+.
T Consensus 294 ~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 NRLASGGDDGIVNFWELE 311 (312)
T ss_pred CceeecCCCceEEEEEec
Confidence 899999999999999875
No 47
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.1e-33 Score=306.44 Aligned_cols=276 Identities=16% Similarity=0.216 Sum_probs=237.0
Q ss_pred CccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccC
Q 001336 738 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 817 (1097)
Q Consensus 738 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 817 (1097)
....+.|..|++|+..++.|..|..|++|.+...+. .. ++ +...+
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl----------------------~~--lk---~~~~l-------- 421 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKL----------------------KK--LK---DASDL-------- 421 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhh----------------------cc--cc---chhhh--------
Confidence 456789999999999999999999999997763110 00 00 01111
Q ss_pred CCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEE
Q 001336 818 DSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGL 896 (1097)
Q Consensus 818 g~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l 896 (1097)
..+=+.+ |-.+.+.|-.+....+++.+|.++|..+.|+| +.++|+++++|++||+|.+.+..++-.++||..+|+.+
T Consensus 422 -~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV 499 (707)
T KOG0263|consen 422 -SNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDV 499 (707)
T ss_pred -ccccccccchhhhhccccCCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeE
Confidence 1111222 33366677777777888999999999999999 99999999999999999999999999999999999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-EeCCeEEEEeCCCcceee
Q 001336 897 AFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLK 975 (1097)
Q Consensus 897 ~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~ 975 (1097)
.|+|.|-++||+|.|++.++|..+... .+.+..+|. +.|.++.|+|++.|+++ +.|.+|++||+.+|..++
T Consensus 500 ~F~P~GyYFatas~D~tArLWs~d~~~-----PlRifaghl---sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR 571 (707)
T KOG0263|consen 500 QFAPRGYYFATASHDQTARLWSTDHNK-----PLRIFAGHL---SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR 571 (707)
T ss_pred EecCCceEEEecCCCceeeeeecccCC-----chhhhcccc---cccceEEECCcccccccCCCCceEEEEEcCCCcEEE
Confidence 999999999999999999999988743 566777777 67999999999999999 589999999999999999
Q ss_pred eeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEec
Q 001336 976 QFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLT 1055 (1097)
Q Consensus 976 ~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~ 1055 (1097)
.|. ||.++|.+++|||+|++|++|+.||.|.+||+.+++++..+. +|++.|+++ +|+. ||..||+|+.
T Consensus 572 iF~--GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-------~Ht~ti~Sl--sFS~-dg~vLasgg~ 639 (707)
T KOG0263|consen 572 IFT--GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-------GHTGTIYSL--SFSR-DGNVLASGGA 639 (707)
T ss_pred Eec--CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-------cccCceeEE--EEec-CCCEEEecCC
Confidence 998 899999999999999999999999999999999999987777 889999988 7777 7999999999
Q ss_pred CCcEEEEecCCCCcc
Q 001336 1056 DGGVYIIEPLEAEGR 1070 (1097)
Q Consensus 1056 Dg~v~~W~~~~~~~~ 1070 (1097)
|++|++||+...-+.
T Consensus 640 DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 640 DNSVRLWDLTKVIEL 654 (707)
T ss_pred CCeEEEEEchhhccc
Confidence 999999999876653
No 48
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=270.70 Aligned_cols=246 Identities=18% Similarity=0.292 Sum_probs=227.8
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001336 376 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 455 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 455 (1097)
++.+|.+.|.|+++.|-+.++++|+.|++|+|||+.+|+... ++.||-..|..+++|+-.. |+++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 588999999999999999999999999999999999998544 6899999999999999888 89999999999999
Q ss_pred ECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeC
Q 001336 456 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 535 (1097)
Q Consensus 456 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 535 (1097)
|++..+.++.+.||-..|.|++.+|.- +.|++|+.|.++++||+++......+.+|...|.++.+.|-...+++++.|
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 999999999999999999999997766 689999999999999999999999999999999999999999999999875
Q ss_pred CCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcC
Q 001336 536 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 615 (1097)
Q Consensus 536 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 615 (1097)
. +|++||+..|+...++..|.. .+.+++.+|....|++++.| .|+-|++..|..+..+.+| ...|++++.+.
T Consensus 299 ~----tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh--~~iintl~~ns 370 (460)
T KOG0285|consen 299 S----TVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGH--NAIINTLSVNS 370 (460)
T ss_pred c----eEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccc--cceeeeeeecc
Confidence 4 699999999999999988887 89999999999888888875 5999999999999998765 77899999998
Q ss_pred CCCEEEEEECCCcEEEEEcCCC
Q 001336 616 EGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 616 ~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
|+ ++++|++.|.+.+||.+++
T Consensus 371 D~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred Cc-eEEEcCCceEEEEEecCcC
Confidence 76 7889999999999999988
No 49
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-32 Score=275.45 Aligned_cols=259 Identities=16% Similarity=0.206 Sum_probs=218.1
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001336 376 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 455 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 455 (1097)
++..|+++|+-+.||++|+|||+++.|.+..||++.....++..+++.+|..+|..+.||||++ +|++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 5889999999999999999999999999999999987766777778999999999999999999 89999999999999
Q ss_pred ECCCCceeEEee-cCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCC-CCceEEEEEccCCCEEEEee
Q 001336 456 DAVTGTKQYIFE-GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP-GHSSTMMAYSADGARLFSCG 533 (1097)
Q Consensus 456 d~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~ 533 (1097)
|+.+|.+.+.+. +|...+.+++| .+||..+++|+.|++|..||++.. .....++. ...|.+++.++||+++++.+
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W--~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAW--CPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEE--ccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEe
Confidence 999999988774 35688999999 566688999999999999998843 33333322 24699999999999999998
Q ss_pred eCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEE
Q 001336 534 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF 613 (1097)
Q Consensus 534 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 613 (1097)
.|. .|++++.++...+.....++ +|++.+++.+++++++.-.+..|++||++..+.+..+.+|....-+..-+|
T Consensus 374 ~d~----~i~l~~~e~~~dr~lise~~--~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 374 VDK----KIRLYNREARVDRGLISEEQ--PITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred ccc----ceeeechhhhhhhccccccC--ceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence 644 69999988776665555544 799999999999999999999999999998888888887755555555666
Q ss_pred cC-CCCEEEEEECCCcEEEEEcCCCceEEEEecc
Q 001336 614 NK-EGILLAVSTNDNGIKILANADGIRLLRTVES 646 (1097)
Q Consensus 614 s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 646 (1097)
.- +..++++|+.|+.|+||+..++ .++..+.|
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~sg-kll~~LsG 480 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRISG-KLLAVLSG 480 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccCC-ceeEeecC
Confidence 65 4589999999999999999888 55555443
No 50
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-32 Score=270.80 Aligned_cols=253 Identities=21% Similarity=0.297 Sum_probs=231.4
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 456 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 456 (1097)
+.+|..+|+.+-|+|+-..+++++.|++|++||..+|+..+ .+.||.+.|..++|+..|+ ++++++.|-.+++||
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD 178 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence 67899999999999999999999999999999999998744 6999999999999999999 899999999999999
Q ss_pred CCC-CceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeC
Q 001336 457 AVT-GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 535 (1097)
Q Consensus 457 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 535 (1097)
..+ .++++.+.+|...|.+++|.|. |.+|++++.|.+|+.|+++++-+...+..|...|..+..+.||..+++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~--gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~- 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPL--GDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN- 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEec--CCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence 887 6788889999999999999665 479999999999999999999999999999999999999999999999975
Q ss_pred CCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCC---------------CCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001336 536 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT---------------KNRFLAAGDEFMIKFWDMDNVNLLASID 600 (1097)
Q Consensus 536 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 600 (1097)
+.++++|-..++++...+..|.- ++.+++|.|. +.++.+++.|++|++||+.++.++.++.
T Consensus 256 ---dqtl~vW~~~t~~~k~~lR~hEh-~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ 331 (406)
T KOG0295|consen 256 ---DQTLRVWVVATKQCKAELREHEH-PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV 331 (406)
T ss_pred ---CceEEEEEeccchhhhhhhcccc-ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe
Confidence 45799999999988888888876 8999988763 2589999999999999999999999999
Q ss_pred cCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEe
Q 001336 601 ADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTV 644 (1097)
Q Consensus 601 ~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 644 (1097)
+| ...|..++|+|.|++|+++.+|+++++||+.+. ++++.+
T Consensus 332 gh--dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~ 372 (406)
T KOG0295|consen 332 GH--DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTL 372 (406)
T ss_pred cc--cceeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeecc
Confidence 77 679999999999999999999999999999987 555444
No 51
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=100.00 E-value=5.6e-31 Score=276.86 Aligned_cols=666 Identities=15% Similarity=0.175 Sum_probs=366.7
Q ss_pred EEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEc
Q 001336 312 VVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 390 (1097)
Q Consensus 312 ~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 390 (1097)
.+-.+. |.+.|+.+.|+|-...|||++|.|..|+||.+..|.... ...+..++.+.+-.|-|+.|+
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fH 137 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFH 137 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeecc
Confidence 444455 999999999999888899999999999999998553221 011222355666788999999
Q ss_pred cCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECC-CCceeEEeecC
Q 001336 391 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV-TGTKQYIFEGH 469 (1097)
Q Consensus 391 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~h 469 (1097)
|...-|...+..|+++|||+.+++.+. .+.+|...|.++.|+.||+ +|++.+.|+.|+|+|.+ .++.+++.++|
T Consensus 138 pTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 138 PTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred cCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCcccccccc
Confidence 977667777788999999999987655 5889999999999999999 89999999999999987 56888888999
Q ss_pred CcCeEEEeecccCCccEEEEEcCC----CeEEEEEcCCCCcee-eecCC-CCceEEEEEccCCCEEEEeeeCCCCCceEE
Q 001336 470 ESPVYSICPHHKENIQFIFSTATD----GKIKAWLYDNLGSRV-DYDAP-GHSSTMMAYSADGARLFSCGTNKEGESYLV 543 (1097)
Q Consensus 470 ~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~-~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 543 (1097)
.+. ..-.+.+.++-..|++.+.+ ..|++||.+...... .++.. ...|.---|.||.++|+.++. ++.++.
T Consensus 213 ~~~-rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGK---G~~~l~ 288 (1012)
T KOG1445|consen 213 GGM-RDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGK---GTNKLF 288 (1012)
T ss_pred ccc-hhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecC---CcceEE
Confidence 764 22222224444567766654 568999987654332 22222 224556678999999888864 466787
Q ss_pred EEeCCCCeee--EEecCCCCcceEEEEEcCCCCEEEEEeC-CCc------------------------------------
Q 001336 544 EWNESEGAVK--RTYHGLGKRSVGVVQFDTTKNRFLAAGD-EFM------------------------------------ 584 (1097)
Q Consensus 544 ~wd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~------------------------------------ 584 (1097)
.+.+...+.. ..+...........++-|....-+..++ +..
T Consensus 289 ~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p 368 (1012)
T KOG1445|consen 289 MLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEP 368 (1012)
T ss_pred EEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCcc
Confidence 7776644321 1111000000011111111100000000 000
Q ss_pred ---EEEEECCCCceEEEEec------CCC----------------CCCcceEEEcCCC-CEEEEEEC-------------
Q 001336 585 ---IKFWDMDNVNLLASIDA------DGG----------------LQASPCIRFNKEG-ILLAVSTN------------- 625 (1097)
Q Consensus 585 ---i~iwd~~~~~~~~~~~~------~~~----------------~~~v~~v~~s~~~-~~l~s~~~------------- 625 (1097)
-.-|=--+.+.+..+.. |+. ...|......|.. ...-+.++
T Consensus 369 ~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~ 448 (1012)
T KOG1445|consen 369 GCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPK 448 (1012)
T ss_pred CcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCc
Confidence 00011111111111110 000 0000000000000 00000000
Q ss_pred CCcEEEEEcCCCce---------EEEEeccccccccccccccccc-CCcccccccCcc---ccccccccccccccccccC
Q 001336 626 DNGIKILANADGIR---------LLRTVESRTFDASRVASAAIVK-APAIGTFGSANA---NVGTSLGERTAPAAAMVGM 692 (1097)
Q Consensus 626 dg~i~iw~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 692 (1097)
...+|-.+....+. ....-++.+..+..+....+.. .|...+...... .+.|...+ ..|...-..|
T Consensus 449 ~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~k-svPe~~~~~~ 527 (1012)
T KOG1445|consen 449 KEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGK-SVPEQPPVNF 527 (1012)
T ss_pred chhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccc-cCCCCCCccc
Confidence 00000000000000 0000000000000000000000 000000000000 00011000 0000000000
Q ss_pred CCCCCCccccCccccccc------ccccccccccccCCCc------eeeEeccCCCcCccceEEEEEccCCceeee--ec
Q 001336 693 SNDSRNFTDVKPKIADEA------VEKSRIWKLTEITEPS------QCRSLRLPDNLTAMRVSRLIYTNSGLAILA--LA 758 (1097)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~------d~~i~~w~~~~~~~~~------~~~~~~~~~~~~~~~i~~l~~spdg~~l~~--~~ 758 (1097)
... .........+.+. -|.+.-|.-..++... ..+.+.....+. +=-|+.+.+++++ .+
T Consensus 528 g~~--~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgE-----snGfcan~~rvAVPL~g 600 (1012)
T KOG1445|consen 528 GKP--ISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGE-----SNGFCANNKRVAVPLAG 600 (1012)
T ss_pred CCC--ccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCc-----cCceeeccceEEEEecC
Confidence 000 0000000000000 0111111111111100 000010000001 1112333444433 45
Q ss_pred cCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEcc-CCCEEEEEe-CCeEEEEEcCC
Q 001336 759 SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK-NDSYVMSAS-GGKISLFNMMT 836 (1097)
Q Consensus 759 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~la~~s-dg~i~iwd~~~ 836 (1097)
..|.|-||+++...+.|+|- +++......|+.++|.| |...||++. ||.|++|.+..
T Consensus 601 ~gG~iai~el~~PGrLPDgv---------------------~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a 659 (1012)
T KOG1445|consen 601 SGGVIAIYELNEPGRLPDGV---------------------MPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTA 659 (1012)
T ss_pred CCceEEEEEcCCCCCCCccc---------------------ccccccCceeeecccCCCChHHeeecccCceEEEEEecc
Confidence 57899999988654444442 22223567899999998 777888888 89999999865
Q ss_pred C-------ceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEe
Q 001336 837 F-------KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSG 909 (1097)
Q Consensus 837 ~-------~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~ 909 (1097)
+ .....+..|...|+.+.|+|--...|++++.|-+|++||+.+++....+.+|++.|.+++|||||+.+||.+
T Consensus 660 ~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVc 739 (1012)
T KOG1445|consen 660 NGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVC 739 (1012)
T ss_pred CCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeee
Confidence 4 344567789999999999997778999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-E----eCCeEEEEeCCCcce--eeeeeccCC
Q 001336 910 ADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-V----HETQIAIYEAPKLEC--LKQFVPREA 982 (1097)
Q Consensus 910 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~----~d~~v~vwd~~~~~~--~~~~~~~~h 982 (1097)
.||+|++|+..+++ ..+.++..+.+..-..+.|.-||+++++ + ++++|.+||..+... +.......
T Consensus 740 KDg~~rVy~Prs~e------~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv- 812 (1012)
T KOG1445|consen 740 KDGTLRVYEPRSRE------QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV- 812 (1012)
T ss_pred cCceEEEeCCCCCC------CccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc-
Confidence 99999999998865 2333444443355677899999999888 4 457899999986543 22221111
Q ss_pred CCCEEEEEEecCCCE-EEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCce
Q 001336 983 SGPITHATYSCDSQS-IYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRV 1035 (1097)
Q Consensus 983 ~~~v~~v~~s~dg~~-l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v 1035 (1097)
...+.--.+.+|... +++|-.|..|..|++........-..+...|.+|.+-+
T Consensus 813 aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~hqGl~ 866 (1012)
T KOG1445|consen 813 APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGHQGLA 866 (1012)
T ss_pred cCccccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCCCccccee
Confidence 122223334556655 66888899999999865544322222334456666643
No 52
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.6e-33 Score=285.93 Aligned_cols=294 Identities=19% Similarity=0.284 Sum_probs=250.8
Q ss_pred CCceEEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCC-CceeeeeeeeEeeccccCccccccccCCCCCCeE
Q 001336 308 LPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGS-RERIAVKSFKVWELGACSMPLQASLSSDYTASVN 385 (1097)
Q Consensus 308 ~~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 385 (1097)
+|+..++++. |...|+++.|.|-.-+||++|+.|+.|+||++-. ++++.+ +.||..+|.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~Vr 262 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPVR 262 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh-------------------hhcchhhhh
Confidence 3778888888 9999999999996556889999999999999976 666553 889999999
Q ss_pred EEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001336 386 RVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI 465 (1097)
Q Consensus 386 ~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 465 (1097)
.++|+++|..+++++.|+.|++||+++|+++.++. -...++|+.|.||+.+ .+++|+.|+.|+.||+++++.+++
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~----~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH----LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEEEEe----cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 99999999999999999999999999999876432 3456899999999955 899999999999999999999999
Q ss_pred eecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceee-ecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEE
Q 001336 466 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 544 (1097)
Q Consensus 466 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 544 (1097)
+..|-+.|..+.| -++|..+++.++|++++||+.+....... .....+...++..+|++++++.-+. ++.|.+
T Consensus 338 Yd~hLg~i~~i~F--~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITF--VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI 411 (503)
T ss_pred HHhhhhheeeeEE--ccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence 9999999999998 56668999999999999999886554333 3334457788999999999998775 446888
Q ss_pred EeCCCC---eeeEEecCCCCcc-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcC-CCCE
Q 001336 545 WNESEG---AVKRTYHGLGKRS-VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGIL 619 (1097)
Q Consensus 545 wd~~~~---~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~ 619 (1097)
+..... ...+.+.||.... -..+.|||||.+|++|+.||.+.+||..+-+++..++.| ...+..+.|+| ....
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah--~~~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH--DQPCIGVDWHPVEPSK 489 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC--CcceEEEEecCCCcce
Confidence 875433 3445677775433 345899999999999999999999999999999999977 67899999999 4578
Q ss_pred EEEEECCCcEEEEE
Q 001336 620 LAVSTNDNGIKILA 633 (1097)
Q Consensus 620 l~s~~~dg~i~iw~ 633 (1097)
+|+++.||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
No 53
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=5.3e-33 Score=272.12 Aligned_cols=282 Identities=21% Similarity=0.337 Sum_probs=239.3
Q ss_pred ceEEEEee----cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeE
Q 001336 310 KTVVMTLN----QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN 385 (1097)
Q Consensus 310 ~~~~~~~~----h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 385 (1097)
...+.+++ ....|+|+.+..+ .+++|..|.+|+|||.++.+++.. +.||++.|.
T Consensus 184 r~~~~rinc~Se~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVL 241 (499)
T KOG0281|consen 184 RHLLQRINCRSENSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVL 241 (499)
T ss_pred ceeeeeecCCcccCCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEE
Confidence 44556665 4568999999754 358999999999999998877653 899999999
Q ss_pred EEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCc---e
Q 001336 386 RVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT---K 462 (1097)
Q Consensus 386 ~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~---~ 462 (1097)
|+.| |.+.|++|+.|.+|+|||+++|++++ ++-+|...|..+.|+. . +++|++.|.++.+||+.... +
T Consensus 242 CLqy--d~rviisGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~n--g--~mvtcSkDrsiaVWdm~sps~it~ 312 (499)
T KOG0281|consen 242 CLQY--DERVIVSGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSN--G--YMVTCSKDRSIAVWDMASPTDITL 312 (499)
T ss_pred eeec--cceEEEecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeC--C--EEEEecCCceeEEEeccCchHHHH
Confidence 9999 66799999999999999999999877 5889999999999983 3 79999999999999998765 3
Q ss_pred eEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceE
Q 001336 463 QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL 542 (1097)
Q Consensus 463 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 542 (1097)
.+.+.||...|+.+.| +. +++++++.|.+|++|++.+.+....+.+|...|.|+.+ .|+++++|+. +.+|
T Consensus 313 rrVLvGHrAaVNvVdf--d~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntI 382 (499)
T KOG0281|consen 313 RRVLVGHRAAVNVVDF--DD--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTI 382 (499)
T ss_pred HHHHhhhhhheeeecc--cc--ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceE
Confidence 3578899999999987 33 69999999999999999999999999999989988876 6888888875 5579
Q ss_pred EEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE-------EEecCCCCCCcceEEEcC
Q 001336 543 VEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA-------SIDADGGLQASPCIRFNK 615 (1097)
Q Consensus 543 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------~~~~~~~~~~v~~v~~s~ 615 (1097)
++||++.|.+++.++||.. -|.++.| +.+.+++|+.||+|++||+..+..-. ....-.+.+.|..+.|.
T Consensus 383 Rlwdi~~G~cLRvLeGHEe-LvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD- 458 (499)
T KOG0281|consen 383 RLWDIECGACLRVLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD- 458 (499)
T ss_pred EEEeccccHHHHHHhchHH-hhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec-
Confidence 9999999999999999997 8999999 45789999999999999998764221 11122346678888885
Q ss_pred CCCEEEEEECCCcEEEEEcCCC
Q 001336 616 EGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 616 ~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
...+++.+.|.+|.|||+.++
T Consensus 459 -~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 459 -EFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred -ceEEEeccCCCeEEEEEcCCC
Confidence 568999999999999999887
No 54
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.4e-31 Score=301.23 Aligned_cols=288 Identities=27% Similarity=0.387 Sum_probs=247.1
Q ss_pred CccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccC
Q 001336 738 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 817 (1097)
Q Consensus 738 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 817 (1097)
+...|.++.|+++|+.+++++.++.+++|+..... + .....+.+ |...|..++|+||
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~----------------~-----~~~~~l~~--h~~~v~~~~fs~d 214 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIK----------------S-----NLLRELSG--HTRGVSDVAFSPD 214 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeeccccc----------------c-----hhhccccc--cccceeeeEECCC
Confidence 46789999999999999999999999999763211 0 11122333 9999999999999
Q ss_pred CCEEEEEe-CCeEEEEEc-CCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEE
Q 001336 818 DSYVMSAS-GGKISLFNM-MTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITG 895 (1097)
Q Consensus 818 g~~la~~s-dg~i~iwd~-~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 895 (1097)
++++++++ |++|+|||+ ..+.+++++++|...|++++|+| +++++++|+.|++|+|||+.+++++..+.+|.+.|++
T Consensus 215 ~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 215 GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG 293 (456)
T ss_pred CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence 99999999 999999999 66799999999999999999999 7799999999999999999999999999999999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEEEEeCCCccee
Q 001336 896 LAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECL 974 (1097)
Q Consensus 896 l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~vwd~~~~~~~ 974 (1097)
++|++++..|++++.|+.|++||+.++... +.....++.... .+..+.|+|++.+++++ .|+.+++||+..+.++
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence 999999999999999999999999997643 334444444422 68999999999999995 7789999999999999
Q ss_pred eeeeccCCCC---CEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCC-CCceeeEEEEEcCCCCCEE
Q 001336 975 KQFVPREASG---PITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNP-SLRVYPLVIAGNPTDPNQF 1050 (1097)
Q Consensus 975 ~~~~~~~h~~---~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h-~~~v~~l~i~~~p~~~~~l 1050 (1097)
..+. +|.. .+.+..++++++++++|+.|+.|++|++.++..++++. +| ...|..+ +++| ...++
T Consensus 370 ~~~~--~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-------~h~~~~~~~~--~~~~-~~~~~ 437 (456)
T KOG0266|consen 370 GTYT--GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-------GHSKAAVSDL--SSHP-TENLI 437 (456)
T ss_pred eeec--ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-------CCCCCceecc--ccCC-CcCee
Confidence 9988 5644 45566678899999999999999999999988887777 66 5556555 8888 67899
Q ss_pred EEEe--cCCcEEEEecC
Q 001336 1051 ALGL--TDGGVYIIEPL 1065 (1097)
Q Consensus 1051 ~s~~--~Dg~v~~W~~~ 1065 (1097)
++++ .|+.+++|...
T Consensus 438 ~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 438 ASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eecCcCCCceEEEecCC
Confidence 9988 79999999764
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-31 Score=246.28 Aligned_cols=289 Identities=17% Similarity=0.232 Sum_probs=246.7
Q ss_pred CceEEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEE
Q 001336 309 PKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 387 (1097)
Q Consensus 309 ~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 387 (1097)
|.+....+. ++++|.++.|+-||+|. .+++.|.+|++|+...|.++.+ ..+|..+|..+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY~-ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~ 65 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNYC-LTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDA 65 (307)
T ss_pred cchhceeecccccceEEEEEccCCCEE-EEcCCCceEEeecccccceeee-------------------ecCCCceeeec
Confidence 444556666 89999999999999976 5777899999999999998875 78999999999
Q ss_pred EEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCC--CceeEE
Q 001336 388 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT--GTKQYI 465 (1097)
Q Consensus 388 ~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~--~~~~~~ 465 (1097)
+.+.|+..+++|+.|..|.+||+.+|+.+++ +.+|.+.|+.++|+.+.. .+++|+.|.++++||.++ .++++.
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr---~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDRR---FRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeeee---cccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccch
Confidence 9999999999999999999999999998774 889999999999999998 899999999999999875 478889
Q ss_pred eecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEE
Q 001336 466 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 545 (1097)
Q Consensus 466 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 545 (1097)
+....+.|.++.+.. ..|++|+.||+++.||++.+...... -+++|++++|++|++..++++.+. .+++.
T Consensus 141 ldea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~s----tlrLl 210 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLDS----TLRLL 210 (307)
T ss_pred hhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeeccc----eeeec
Confidence 988899999997732 57999999999999999976655443 356899999999999999988744 69999
Q ss_pred eCCCCeeeEEecCCCCcce-EEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEE
Q 001336 546 NESEGAVKRTYHGLGKRSV-GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST 624 (1097)
Q Consensus 546 d~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 624 (1097)
|-.+|+++..+.||.+... ..+++.....++++|++||.|++||+..+..+..+..++ ...|..++++|.-..++++.
T Consensus 211 Dk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~-~v~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 211 DKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVS-TVIVTDLSCHPTMDDFITAT 289 (307)
T ss_pred ccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCC-ceeEEeeecccCccceeEec
Confidence 9999999999999976332 345777777899999999999999999999999988653 22378999999777777665
Q ss_pred CCCcEEEEEc
Q 001336 625 NDNGIKILAN 634 (1097)
Q Consensus 625 ~dg~i~iw~~ 634 (1097)
.. .+..|.-
T Consensus 290 ~~-~~~~~~~ 298 (307)
T KOG0316|consen 290 GH-GDLFWYQ 298 (307)
T ss_pred CC-ceeceee
Confidence 44 4556643
No 56
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2e-32 Score=274.70 Aligned_cols=284 Identities=15% Similarity=0.246 Sum_probs=246.4
Q ss_pred CCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001336 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 459 (1097)
Q Consensus 380 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~ 459 (1097)
-...|..|.|.|+|+.|++|+..|.+.+|+..+ +.-...+..|..+|.++.|++++. +++||+.+|.|++|+..-
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS---FNFETILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCce---eeHHHHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccch
Confidence 345899999999999999999999999999754 222224678999999999999999 899999999999999644
Q ss_pred CceeEEeecC-CcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCC
Q 001336 460 GTKQYIFEGH-ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG 538 (1097)
Q Consensus 460 ~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 538 (1097)
..++.+.+| ...|.+++|++ +...++++++||+|+|||....+....+.+|+-.|.++.|+|.-..+++++.|
T Consensus 170 -nnVk~~~ahh~eaIRdlafSp--nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskD--- 243 (464)
T KOG0284|consen 170 -NNVKIIQAHHAEAIRDLAFSP--NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKD--- 243 (464)
T ss_pred -hhhHHhhHhhhhhhheeccCC--CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCC---
Confidence 445555555 49999999976 44789999999999999999988888889999999999999999999999864
Q ss_pred CceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcC-CC
Q 001336 539 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EG 617 (1097)
Q Consensus 539 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~ 617 (1097)
..|++||.+++.++.++.+|.. .|..+.|.+++++|+++|.|..++++|+++.+.+.++.+| ...|++++|+| ..
T Consensus 244 -nlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H--kkdv~~~~WhP~~~ 319 (464)
T KOG0284|consen 244 -NLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH--KKDVTSLTWHPLNE 319 (464)
T ss_pred -ceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc--hhhheeeccccccc
Confidence 3799999999999999999998 9999999999999999999999999999999989888866 77899999999 66
Q ss_pred CEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCC
Q 001336 618 ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSR 697 (1097)
Q Consensus 618 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1097)
.+|.+|+.||.|..|.+.... .
T Consensus 320 ~lftsgg~Dgsvvh~~v~~~~-p--------------------------------------------------------- 341 (464)
T KOG0284|consen 320 SLFTSGGSDGSVVHWVVGLEE-P--------------------------------------------------------- 341 (464)
T ss_pred cceeeccCCCceEEEeccccc-c---------------------------------------------------------
Confidence 799999999999999876220 0
Q ss_pred CccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccC
Q 001336 698 NFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWP 769 (1097)
Q Consensus 698 ~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~ 769 (1097)
+.....+|...|.+++|+|=|..|++|+.|.++++|.-.
T Consensus 342 ---------------------------------~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 342 ---------------------------------LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ---------------------------------ccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 011223588999999999999999999999999999644
No 57
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.6e-28 Score=259.27 Aligned_cols=511 Identities=15% Similarity=0.181 Sum_probs=360.8
Q ss_pred cccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCce-eEEeecC-CcCeEEEeecccCCccEEEEEcCCCeEEEEEc
Q 001336 424 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QYIFEGH-ESPVYSICPHHKENIQFIFSTATDGKIKAWLY 501 (1097)
Q Consensus 424 ~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 501 (1097)
-...+|.++||+.+++ .|+.+-.||.|-+|++..+-. ...+.++ ...|.+++|. ++..|++.+.+|.|.-||+
T Consensus 23 ~~Ps~I~slA~s~kS~--~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~---e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSN--QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA---EGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred eeccceEEEEEeccCC--ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc---cCCeEEeecCCceEEEEec
Confidence 3456799999999999 699999999999999987643 3455655 4679999996 3468999999999999999
Q ss_pred CCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecC-CCCcceEEEEEcCCCCEEEEEe
Q 001336 502 DNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG-LGKRSVGVVQFDTTKNRFLAAG 580 (1097)
Q Consensus 502 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~ 580 (1097)
.+.+.+..+...++.|.+++.+|.+..++.++.++ .+..++...+++.....- .+.+.+.++.|+|++..+++|+
T Consensus 98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddG----vl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDG----VLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred ccCceeEEecCCCcceeEEEeCCccceEEeecCCc----eEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc
Confidence 99999999999999999999999999999998654 677777777765543322 2225899999999999999999
Q ss_pred CCCcEEEEECCCCceEEEEec-----CC-CCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccc
Q 001336 581 DEFMIKFWDMDNVNLLASIDA-----DG-GLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRV 654 (1097)
Q Consensus 581 ~dg~i~iwd~~~~~~~~~~~~-----~~-~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 654 (1097)
.||.|++||..++..+..... .. ...-|.++.|-.+ ..|++|...|+|.+||...+ .+.+..
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~g-TLiqS~---------- 241 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFG-TLIQSH---------- 241 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCc-chhhhh----------
Confidence 999999999999987773321 11 2223455555544 57899999999999998776 222211
Q ss_pred cccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccC
Q 001336 655 ASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLP 734 (1097)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 734 (1097)
T Consensus 242 -------------------------------------------------------------------------------- 241 (691)
T KOG2048|consen 242 -------------------------------------------------------------------------------- 241 (691)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEE
Q 001336 735 DNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFAL 814 (1097)
Q Consensus 735 ~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~ 814 (1097)
..|...|.+++..+++.++++++-|+.+..|....... -|-.... . ..|...|.+++.
T Consensus 242 -~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~-------------~wv~~~~------r--~~h~hdvrs~av 299 (691)
T KOG2048|consen 242 -SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS-------------EWVINSR------R--DLHAHDVRSMAV 299 (691)
T ss_pred -hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc-------------ceeeecc------c--cCCcccceeeee
Confidence 12778899999999999999999999998886653211 0211111 1 138899999999
Q ss_pred ccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEE-EEEeCCCCCEEEEEECCCcEEEEEcccce---------EE
Q 001336 815 SKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATF-LAFHPQDNNIIAIGMEDSSIQIYNVRVDE---------VK 883 (1097)
Q Consensus 815 s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~-l~~sp~~~~~la~g~~dg~v~vwd~~~~~---------~~ 883 (1097)
.++ .+++|+ |.++.+-.....+..........+-.+ +...| .++|..--.+..+.+|.+.+.- +.
T Consensus 300 ~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Ll 375 (691)
T KOG2048|consen 300 IEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLL 375 (691)
T ss_pred ecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCc--cceEEEEeccccccceeccCcccccccChhhhe
Confidence 888 777777 888777665442211111111111111 22233 4455555567778888876541 11
Q ss_pred E-EecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-E-eC
Q 001336 884 T-KLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-V-HE 960 (1097)
Q Consensus 884 ~-~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~-~d 960 (1097)
+ .+++| ..|.+.+.||+|++++.+.- ..+++|.++...... ...+.. .....-....+.|+-|+..++. + ..
T Consensus 376 kl~~k~~-~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk--~~~v~~-~~~~~~~a~~i~ftid~~k~~~~s~~~ 450 (691)
T KOG2048|consen 376 KLFTKEK-ENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVK--VINVDD-VPLALLDASAISFTIDKNKLFLVSKNI 450 (691)
T ss_pred eeecCCc-cceeeeccCCCCCEEEEeec-cceEEEEeccCccee--EEEecc-chhhhccceeeEEEecCceEEEEeccc
Confidence 1 22334 45899999999999997653 457888887633211 111111 1111134678899999888777 4 66
Q ss_pred CeEEEEeCCCcce--eeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeE
Q 001336 961 TQIAIYEAPKLEC--LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPL 1038 (1097)
Q Consensus 961 ~~v~vwd~~~~~~--~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l 1038 (1097)
..+.++++++... +..+...+-...|..+..|+||+|||+.+.+|.|.+|++++++..+..... ...|+.+
T Consensus 451 ~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl-------n~~vTa~ 523 (691)
T KOG2048|consen 451 FSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL-------NIDVTAA 523 (691)
T ss_pred ceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc-------Ccceeee
Confidence 8888888876533 333333334678999999999999999999999999999998876544211 1335544
Q ss_pred EEEEcCCCCCEEEEEecCCcEEEEecCCC-CcccCCCC
Q 001336 1039 VIAGNPTDPNQFALGLTDGGVYIIEPLEA-EGRWGTSP 1075 (1097)
Q Consensus 1039 ~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~-~~~~~~~~ 1075 (1097)
+|+|.+...++....|+.|+-+|++.. -.+|+...
T Consensus 524 --~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~n 559 (691)
T KOG2048|consen 524 --AFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNN 559 (691)
T ss_pred --eccccccCcEEEEecCCeEEEEecchhhhhhhhhcc
Confidence 788778889999999999999999322 23455443
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=9.6e-30 Score=278.18 Aligned_cols=283 Identities=23% Similarity=0.409 Sum_probs=249.7
Q ss_pred ecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEE
Q 001336 317 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 396 (1097)
Q Consensus 317 ~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 396 (1097)
.|.+.|++++|+|++++ +++|+.||.|.+|++.+++.... +..|...+.++.|+|++++|
T Consensus 7 ~h~~~i~~~~~~~~~~~-l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGKL-LATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCCE-EEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCCCCEE
Confidence 38899999999999985 57888999999999998764432 56788899999999999999
Q ss_pred EEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEE
Q 001336 397 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 476 (1097)
Q Consensus 397 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 476 (1097)
++++.||.|++|++.+++.+. .+..|...|.++.|+++++ ++++++.|+.|++||+.+++....+..|...|.++
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 999999999999999875444 4678999999999999977 78888889999999999999999999999999999
Q ss_pred eecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEe
Q 001336 477 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY 556 (1097)
Q Consensus 477 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 556 (1097)
+|++. +.++++++.|+.|++||++..+....+..+...+.++.|+|+++.+++++. ++.|.+||+..++.+..+
T Consensus 142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecch
Confidence 99654 578888888999999999988777777777779999999999999998875 346999999999988888
Q ss_pred cCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEE
Q 001336 557 HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 633 (1097)
Q Consensus 557 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~ 633 (1097)
..+.. .+.++.|++++.++++++.||.|++|++.+++.+..+..+ ...+.+++|++++.++++++.||.+++|+
T Consensus 216 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77766 8999999999888888888999999999999988888754 66899999999999999999999999995
No 59
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2.1e-31 Score=261.03 Aligned_cols=232 Identities=16% Similarity=0.319 Sum_probs=204.0
Q ss_pred CCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001336 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 459 (1097)
Q Consensus 380 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~ 459 (1097)
....|.|+.+ |...+++|..|.+|+|||.++-.+++ .+.||++.|.|+.|. .+ .+++|+.|.+|++||+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 4568999998 77889999999999999999876655 588999999999985 55 899999999999999999
Q ss_pred CceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCce---eeecCCCCceEEEEEccCCCEEEEeeeCC
Q 001336 460 GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR---VDYDAPGHSSTMMAYSADGARLFSCGTNK 536 (1097)
Q Consensus 460 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 536 (1097)
|+++.++-+|...|..+.|+ . .++++++.|.++.+||+...... ..+.+|...|..+.|+ .+++++++.
T Consensus 267 ge~l~tlihHceaVLhlrf~--n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg-- 338 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFS--N--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG-- 338 (499)
T ss_pred CchhhHHhhhcceeEEEEEe--C--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC--
Confidence 99999999999999999984 3 58999999999999999876533 3466777788888885 459998875
Q ss_pred CCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCC
Q 001336 537 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 616 (1097)
Q Consensus 537 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 616 (1097)
+.+|++|+..+++.++++.+|.. .|.|+.+ .++++++|+.|.+|++||+..|.++..+.+| ..-|.|+.|+
T Consensus 339 --DRTikvW~~st~efvRtl~gHkR-GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGH--EeLvRciRFd-- 409 (499)
T KOG0281|consen 339 --DRTIKVWSTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRFD-- 409 (499)
T ss_pred --CceEEEEeccceeeehhhhcccc-cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhch--HHhhhheeec--
Confidence 55799999999999999999987 7777665 6789999999999999999999999999976 7789999996
Q ss_pred CCEEEEEECCCcEEEEEcCCC
Q 001336 617 GILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 617 ~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
.+.+++|+.||+|++||+..+
T Consensus 410 ~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 410 NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred CceeeeccccceEEEEecccc
Confidence 568999999999999999776
No 60
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=5.6e-31 Score=270.61 Aligned_cols=285 Identities=19% Similarity=0.254 Sum_probs=241.5
Q ss_pred CcCccceEEEEEcc-CCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEE
Q 001336 736 NLTAMRVSRLIYTN-SGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFAL 814 (1097)
Q Consensus 736 ~~~~~~i~~l~~sp-dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~ 814 (1097)
.+|...|+++.|.| .+.+|++++.|+.|+||++- + .+.++.. +.+ |..+|.+++|
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy-------------------~--~~~~lrt-f~g--H~k~Vrd~~~ 266 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVY-------------------D--DRRCLRT-FKG--HRKPVRDASF 266 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEe-------------------c--Ccceehh-hhc--chhhhhhhhc
Confidence 56999999999999 89999999999999999653 3 2333332 444 9999999999
Q ss_pred ccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCe
Q 001336 815 SKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRI 893 (1097)
Q Consensus 815 s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V 893 (1097)
+++|..+.+++ |+.|++||+++|+++..+. ....++|+.|.|++.+.+++|+.|+.|+.||+++++.++++..|-+.|
T Consensus 267 s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i 345 (503)
T KOG0282|consen 267 NNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAI 345 (503)
T ss_pred cccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhe
Confidence 99999999999 9999999999999999986 456789999999655899999999999999999999999999999999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-EeCCeEEEEeCCCcc
Q 001336 894 TGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLE 972 (1097)
Q Consensus 894 ~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~~d~~v~vwd~~~~~ 972 (1097)
..+.|-++|+.++++++|++++||+....-... .+.-...| ...++..+|.+.++++ +.|+.|.+|.+...-
T Consensus 346 ~~i~F~~~g~rFissSDdks~riWe~~~~v~ik--~i~~~~~h-----smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~ 418 (503)
T KOG0282|consen 346 LDITFVDEGRRFISSSDDKSVRIWENRIPVPIK--NIADPEMH-----TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF 418 (503)
T ss_pred eeeEEccCCceEeeeccCccEEEEEcCCCccch--hhcchhhc-----cCcceecCCCCCeehhhccCceEEEEeccccc
Confidence 999999999999999999999999988743211 22222222 3678999999999999 899999999876432
Q ss_pred ---eeeeeeccCC--CCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCC
Q 001336 973 ---CLKQFVPREA--SGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDP 1047 (1097)
Q Consensus 973 ---~~~~~~~~~h--~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~ 1047 (1097)
....+. || .+--..+.|||||++|++|+.||.+.+||..+-++++.+. +|+..+.. +.|+|...
T Consensus 419 r~nkkK~fe--Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk-------ah~~~ci~--v~wHP~e~ 487 (503)
T KOG0282|consen 419 RLNKKKRFE--GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK-------AHDQPCIG--VDWHPVEP 487 (503)
T ss_pred ccCHhhhhc--ceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc-------cCCcceEE--EEecCCCc
Confidence 122333 66 5667789999999999999999999999999999988877 56566554 49999999
Q ss_pred CEEEEEecCCcEEEEe
Q 001336 1048 NQFALGLTDGGVYIIE 1063 (1097)
Q Consensus 1048 ~~l~s~~~Dg~v~~W~ 1063 (1097)
..+++|+.||.|++|+
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 9999999999999996
No 61
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=236.01 Aligned_cols=246 Identities=19% Similarity=0.271 Sum_probs=217.5
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001336 376 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 455 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 455 (1097)
++..|.++|..+.|+-||+|.++++.|.+|++|+...|.+++ ++.+|...|..++.+.|+. .+++|+.|+.+.+|
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQVW 86 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEEE
Confidence 478899999999999999999999999999999999998776 6899999999999999998 69999999999999
Q ss_pred ECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCc--eeeecCCCCceEEEEEccCCCEEEEee
Q 001336 456 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSADGARLFSCG 533 (1097)
Q Consensus 456 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~ 533 (1097)
|+.+|+.++.|.+|.+.|+.+.| +.+...+++|+.|.++++||-+.... ...+......|.++..+ +..+++++
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~f--NeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS 162 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRF--NEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS 162 (307)
T ss_pred EcccCeeeeecccccceeeEEEe--cCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence 99999999999999999999999 45558999999999999999876543 34444445577777764 56788887
Q ss_pred eCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEE
Q 001336 534 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF 613 (1097)
Q Consensus 534 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 613 (1097)
.|+ +++.||++.|++...+-++ +|++++|+++++..++++-|+++++.|-++|+++..+.+|.....-..+++
T Consensus 163 ~DG----tvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l 235 (307)
T KOG0316|consen 163 VDG----TVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCL 235 (307)
T ss_pred cCC----cEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeee
Confidence 654 6999999999988877775 899999999999999999999999999999999999998866555567778
Q ss_pred cCCCCEEEEEECCCcEEEEEcCCC
Q 001336 614 NKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 614 s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
+.....+++|++||.+++||+.+.
T Consensus 236 ~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 236 NQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred cccceeEEeccCCceEEEEEeccc
Confidence 877889999999999999999877
No 62
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.9e-28 Score=267.91 Aligned_cols=247 Identities=24% Similarity=0.396 Sum_probs=219.1
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 456 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 456 (1097)
+.+|.+.|.+++|+|++++|++++.||.|++|++.+++... .+.+|...+..+.|+++++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 66899999999999999999999999999999999876443 4678999999999999998 799999999999999
Q ss_pred CCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCC
Q 001336 457 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 536 (1097)
Q Consensus 457 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 536 (1097)
+.+++.+..+..|...|.+++|++. +.++++++.|+.|++||+++.+....+..+...+.++.|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 9998899999999999999999654 578888888999999999987777777777778999999999888888763
Q ss_pred CCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCC
Q 001336 537 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 616 (1097)
Q Consensus 537 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 616 (1097)
++.|.+||+++++.+..+..+.. .+.++.|+|+++.+++++.|+.|++||+.+++.+..+..+ ...+.+++|+|+
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~ 230 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH--ENGVNSVAFSPD 230 (289)
T ss_pred --CCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc--CCceEEEEEcCC
Confidence 33699999999988888887765 8999999999999999999999999999998888887644 558999999999
Q ss_pred CCEEEEEECCCcEEEEEcCCC
Q 001336 617 GILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 617 ~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
+.++++++.||.|++|++.++
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCc
Confidence 888888888999999998765
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2e-28 Score=302.10 Aligned_cols=291 Identities=12% Similarity=0.159 Sum_probs=235.9
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc-CCCEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTLF 396 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~l 396 (1097)
|...|++++|+|+|++ +|+|+.|+.|+|||......... ....+.. ...+...|.+++|+| ++.+|
T Consensus 482 ~~~~V~~i~fs~dg~~-latgg~D~~I~iwd~~~~~~~~~-----------~~~~~~~-~~~~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 482 SSNLVCAIGFDRDGEF-FATAGVNKKIKIFECESIIKDGR-----------DIHYPVV-ELASRSKLSGICWNSYIKSQV 548 (793)
T ss_pred CCCcEEEEEECCCCCE-EEEEeCCCEEEEEECCccccccc-----------ccccceE-EecccCceeeEEeccCCCCEE
Confidence 8899999999999995 68999999999999864211000 0000000 112356899999998 57899
Q ss_pred EEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEec-CCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEE
Q 001336 397 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY-PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 475 (1097)
Q Consensus 397 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~-d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 475 (1097)
|+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|+.|++||+.++..+..+..+ ..|.+
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~ 622 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC 622 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence 999999999999999887654 4789999999999997 667 8999999999999999999999888755 67888
Q ss_pred EeecccCCccEEEEEcCCCeEEEEEcCCCC-ceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCC-----
Q 001336 476 ICPHHKENIQFIFSTATDGKIKAWLYDNLG-SRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE----- 549 (1097)
Q Consensus 476 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----- 549 (1097)
+.|.+ ++|.+|++|+.||.|++||++... ....+..|...|.++.|. ++.++++++.| +.|++||+..
T Consensus 623 v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D----~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 623 VQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTD----NTLKLWDLSMSISGI 696 (793)
T ss_pred EEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECC----CEEEEEeCCCCcccc
Confidence 88843 457899999999999999998765 345566788899999997 77889998764 4699999974
Q ss_pred -CeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe-----------cCCCCCCcceEEEcCCC
Q 001336 550 -GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID-----------ADGGLQASPCIRFNKEG 617 (1097)
Q Consensus 550 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~v~~s~~~ 617 (1097)
...+..+.+|.. .+.+++|++++.+|++|+.|+.|++|+......+..+. ...+...|.+++|+|++
T Consensus 697 ~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~ 775 (793)
T PLN00181 697 NETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS 775 (793)
T ss_pred CCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence 356788888876 88899999999999999999999999987665443321 12234568999999999
Q ss_pred CEEEEEECCCcEEEEEc
Q 001336 618 ILLAVSTNDNGIKILAN 634 (1097)
Q Consensus 618 ~~l~s~~~dg~i~iw~~ 634 (1097)
..|++|+.||.|+||++
T Consensus 776 ~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 776 STLVAANSTGNIKILEM 792 (793)
T ss_pred CeEEEecCCCcEEEEec
Confidence 99999999999999986
No 64
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=2.7e-30 Score=242.44 Aligned_cols=285 Identities=20% Similarity=0.316 Sum_probs=252.3
Q ss_pred EeecCCCeeEEEEcc---CCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc
Q 001336 315 TLNQGSAVKSMDFHP---VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 391 (1097)
Q Consensus 315 ~~~h~~~V~~v~fsp---dg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 391 (1097)
.-+|..+|-.++||| +| |+|++++.||.-.+=+=++|.-+.+ +.||.+.|+...++.
T Consensus 10 c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l~~ 69 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATLNK 69 (334)
T ss_pred EcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeecCc
Confidence 345899999999986 55 5789999999999888888888775 889999999999999
Q ss_pred CCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-eeEEeecCC
Q 001336 392 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIFEGHE 470 (1097)
Q Consensus 392 d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~ 470 (1097)
+....|+++.|-+.+|||.-+|..+.. + .|..-|.+++|+.|.+ +|+||+.+..+||+|++..+ +..++.+|.
T Consensus 70 na~~aasaaadftakvw~a~tgdelhs---f-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~ght 143 (334)
T KOG0278|consen 70 NATRAASAAADFTAKVWDAVTGDELHS---F-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGHT 143 (334)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhhhh---h-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCCC
Confidence 999999999999999999999987763 2 4889999999999999 79999999999999998654 567899999
Q ss_pred cCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC
Q 001336 471 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 550 (1097)
Q Consensus 471 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 550 (1097)
+.|..+.|.... +.|++.+.|++||+||.+++.....+.. ..+|+++.++++|++|.++... .|..||..+.
T Consensus 144 g~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~gs-----sV~Fwdaksf 215 (334)
T KOG0278|consen 144 GGIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYGS-----SVKFWDAKSF 215 (334)
T ss_pred CcceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecCc-----eeEEeccccc
Confidence 999999986544 6788889999999999999988887765 4589999999999999887532 5999999999
Q ss_pred eeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE-ecCCCCCCcceEEEcCCCCEEEEEECCCcE
Q 001336 551 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI-DADGGLQASPCIRFNKEGILLAVSTNDNGI 629 (1097)
Q Consensus 551 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i 629 (1097)
..++.+.... .|.+...+|+...+++|++|..++.||..+|+.+..+ + +|.++|.|+.|+|+|...++|+.||+|
T Consensus 216 ~~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nk--gh~gpVhcVrFSPdGE~yAsGSEDGTi 291 (334)
T KOG0278|consen 216 GLLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNK--GHFGPVHCVRFSPDGELYASGSEDGTI 291 (334)
T ss_pred cceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeeccc--CCCCceEEEEECCCCceeeccCCCceE
Confidence 9999888765 5888999999999999999999999999999999886 4 558899999999999999999999999
Q ss_pred EEEEcCCC
Q 001336 630 KILANADG 637 (1097)
Q Consensus 630 ~iw~~~~~ 637 (1097)
++|....+
T Consensus 292 rlWQt~~~ 299 (334)
T KOG0278|consen 292 RLWQTTPG 299 (334)
T ss_pred EEEEecCC
Confidence 99998766
No 65
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=3.2e-30 Score=250.21 Aligned_cols=293 Identities=18% Similarity=0.278 Sum_probs=239.1
Q ss_pred cCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEcc
Q 001336 737 LTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK 816 (1097)
Q Consensus 737 ~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 816 (1097)
+....+.|..|+|||++|++++-||.|.+|++.+++...+-+..+.. . .. .+..+|.|+.||.
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd---------~-fM-------Mmd~aVlci~FSR 273 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD---------N-FM-------MMDDAVLCISFSR 273 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc---------c-ee-------ecccceEEEeecc
Confidence 35567889999999999999999999999998866443332221111 1 11 2688999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCceeEEeC-CCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeE
Q 001336 817 NDSYVMSAS-GGKISLFNMMTFKTMTTFM-PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRIT 894 (1097)
Q Consensus 817 dg~~la~~s-dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~ 894 (1097)
|...+|+|+ ||+|++|.+.+|.|++.|. .|...|+|+.||. |+..+.+++.|.+++|.-+.+|+++++++||++-|+
T Consensus 274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN 352 (508)
T ss_pred cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence 999999999 9999999999999999987 8999999999999 888899999999999999999999999999999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCC-cEEEE-EeCCeEEEEeCCCcc
Q 001336 895 GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQ-THLLA-VHETQIAIYEAPKLE 972 (1097)
Q Consensus 895 ~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~~-~~d~~v~vwd~~~~~ 972 (1097)
...|++||..+++++.||+|++|+.++.++..+ +...... -+|..+-.-|.. ..+++ -..++|+|-++. |+
T Consensus 353 ~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~T--fk~~~~d----~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQ 425 (508)
T KOG0275|consen 353 EATFTDDGHHIISASSDGTVKVWHGKTTECLST--FKPLGTD----YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQ 425 (508)
T ss_pred ceEEcCCCCeEEEecCCccEEEecCcchhhhhh--ccCCCCc----ccceeEEEcCCCCceEEEEcCCCeEEEEecc-ce
Confidence 999999999999999999999999999876542 2222211 346777666643 33444 467889988886 77
Q ss_pred eeeeeeccC-CCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEE
Q 001336 973 CLKQFVPRE-ASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFA 1051 (1097)
Q Consensus 973 ~~~~~~~~~-h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~ 1051 (1097)
.++.+..+. ..+...+.+.||.|.++.+.++|+.++.|.+.+|++...+... .-.|. .++-+| ..++++
T Consensus 426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh-------EkdvI--Gl~HHP-HqNllA 495 (508)
T KOG0275|consen 426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH-------EKDVI--GLTHHP-HQNLLA 495 (508)
T ss_pred EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc-------ccccc--ccccCc-ccchhh
Confidence 777776422 2567788899999999999999999999999999998777733 33343 447788 678999
Q ss_pred EEecCCcEEEEec
Q 001336 1052 LGLTDGGVYIIEP 1064 (1097)
Q Consensus 1052 s~~~Dg~v~~W~~ 1064 (1097)
+-++||.+++|..
T Consensus 496 sYsEDgllKLWkp 508 (508)
T KOG0275|consen 496 SYSEDGLLKLWKP 508 (508)
T ss_pred hhcccchhhhcCC
Confidence 9999999999963
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.9e-28 Score=300.67 Aligned_cols=320 Identities=12% Similarity=0.127 Sum_probs=241.2
Q ss_pred ccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCC
Q 001336 711 VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP 790 (1097)
Q Consensus 711 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~ 790 (1097)
+|-+++|+............ .....|.+.|.+++|+|+|+++++++.|+.|+||++..... .+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~--~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~--~~------------- 519 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQ--GDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIK--DG------------- 519 (793)
T ss_pred hhhhhhhcccceEEEEeecc--ccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccc--cc-------------
Confidence 45566776654222111110 11134889999999999999999999999999998753100 00
Q ss_pred CCCccccccCCCCCCCCCeeEEEEcc-CCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEEC
Q 001336 791 PSGILMTNDISDTNPEDAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME 868 (1097)
Q Consensus 791 ~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~ 868 (1097)
.........+. +...+.+++|++ ++.+|++++ ||+|++||+.+++.+..+.+|...|++++|+|.++.+|++|+.
T Consensus 520 ~~~~~~~~~~~---~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~ 596 (793)
T PLN00181 520 RDIHYPVVELA---SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD 596 (793)
T ss_pred cccccceEEec---ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC
Confidence 00000000111 356789999987 478999998 9999999999999999999999999999999757889999999
Q ss_pred CCcEEEEEcccceEEEEecccccCeEEEEEe-cCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEE
Q 001336 869 DSSIQIYNVRVDEVKTKLKGHQKRITGLAFS-NTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQ 947 (1097)
Q Consensus 869 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s-~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 947 (1097)
||.|++||+.+++.+..+..| ..|.++.|+ ++|.+|++|+.|+.|++||+...+. .+....+|. ..|..+.
T Consensus 597 Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~----~~~~~~~h~---~~V~~v~ 668 (793)
T PLN00181 597 DGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL----PLCTMIGHS---KTVSYVR 668 (793)
T ss_pred CCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc----cceEecCCC---CCEEEEE
Confidence 999999999999988888765 679999995 5799999999999999999987431 122233444 5689999
Q ss_pred EcCCCcEEEE-EeCCeEEEEeCCCc------ceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeee
Q 001336 948 FHLDQTHLLA-VHETQIAIYEAPKL------ECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCR 1020 (1097)
Q Consensus 948 ~s~dg~~l~~-~~d~~v~vwd~~~~------~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~ 1020 (1097)
|. ++.+|++ +.|++|++||+..+ ..+..+. +|...+..++|++++.+|++|+.|++|++|+.........
T Consensus 669 f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s 745 (793)
T PLN00181 669 FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM--GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLS 745 (793)
T ss_pred Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc--CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEE
Confidence 97 5667766 68999999999753 3455554 8999999999999999999999999999999876654433
Q ss_pred eCCCCc------CCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEec
Q 001336 1021 INPTAY------LPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEP 1064 (1097)
Q Consensus 1021 ~~~~~~------~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~ 1064 (1097)
+..... ....|...|.++ +|+| ++.+|++|+.||.|++|++
T Consensus 746 ~~~~~~~~~~~~~~~~~~~~V~~v--~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 746 YKFKTIDPVSGLEVDDASQFISSV--CWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EecccCCcccccccCCCCcEEEEE--EEcC-CCCeEEEecCCCcEEEEec
Confidence 221110 112344556655 8888 6899999999999999986
No 67
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=5.9e-30 Score=240.13 Aligned_cols=298 Identities=16% Similarity=0.198 Sum_probs=253.3
Q ss_pred CCCcCccceEEEEEc---cCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCee
Q 001336 734 PDNLTAMRVSRLIYT---NSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVP 810 (1097)
Q Consensus 734 ~~~~~~~~i~~l~~s---pdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~ 810 (1097)
...+|..+|..++|+ |+|-+|++++.||.-.+- +-++|..+.. +.| |.+.|+
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr----------------------~g~tgdwigt-feg--hkgavw 63 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLR----------------------NGDTGDWIGT-FEG--HKGAVW 63 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhc----------------------cCCCCCcEEe-eec--cCccee
Confidence 346799999999998 489999999999865542 3455555443 444 999999
Q ss_pred EEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccc-eEEEEecc
Q 001336 811 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD-EVKTKLKG 888 (1097)
Q Consensus 811 ~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~-~~~~~l~~ 888 (1097)
...+..+...-|+++ |=+-+|||.-+|..+..|. |..-|.+++|+. |.++|++|+.+..++|||++.. ....++.+
T Consensus 64 ~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 64 SATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred eeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcC
Confidence 999999999999998 8899999999999999997 889999999999 8999999999999999999864 35678899
Q ss_pred cccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeC
Q 001336 889 HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEA 968 (1097)
Q Consensus 889 h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~ 968 (1097)
|.+.|..+.|....+.+++++.|++|++||..++...+. +..+ .+|+++.+++||++|.++..+.|.+||.
T Consensus 142 htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~s--L~~~-------s~VtSlEvs~dG~ilTia~gssV~Fwda 212 (334)
T KOG0278|consen 142 HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQS--LEFN-------SPVTSLEVSQDGRILTIAYGSSVKFWDA 212 (334)
T ss_pred CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEE--EecC-------CCCcceeeccCCCEEEEecCceeEEecc
Confidence 999999999999899999999999999999999774332 2221 3589999999999999999999999999
Q ss_pred CCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCC
Q 001336 969 PKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPN 1048 (1097)
Q Consensus 969 ~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~ 1048 (1097)
.+.+.++.+.. .-.|.+..++|+...+++|++|..++.||..+++.+-.+ ..||-+.|.++ .|+| ||.
T Consensus 213 ksf~~lKs~k~---P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~------nkgh~gpVhcV--rFSP-dGE 280 (334)
T KOG0278|consen 213 KSFGLLKSYKM---PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY------NKGHFGPVHCV--RFSP-DGE 280 (334)
T ss_pred ccccceeeccC---ccccccccccCCCceEEecCcceEEEEEeccCCceeeec------ccCCCCceEEE--EECC-CCc
Confidence 99999988864 458999999999999999999999999999999988664 23778888866 9999 799
Q ss_pred EEEEEecCCcEEEEecCCCCc--ccCCCCCCCC
Q 001336 1049 QFALGLTDGGVYIIEPLEAEG--RWGTSPPNEN 1079 (1097)
Q Consensus 1049 ~l~s~~~Dg~v~~W~~~~~~~--~~~~~~~~~~ 1079 (1097)
..++||.||+|++|.....+. .|.---|.+.
T Consensus 281 ~yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~ 313 (334)
T KOG0278|consen 281 LYASGSEDGTIRLWQTTPGKTYGLWKCVKPEDD 313 (334)
T ss_pred eeeccCCCceEEEEEecCCCchhhccccChhhh
Confidence 999999999999999865443 4665555544
No 68
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.97 E-value=9.4e-28 Score=252.74 Aligned_cols=668 Identities=14% Similarity=0.146 Sum_probs=370.5
Q ss_pred ccCCCCCCeEEEEEcc-CCCEEEEEECCCEEEEEEccCCeeee---eeeeeecccCcEEEEEEecCCCcEEEEEEeCCCc
Q 001336 376 LSSDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELR---NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV 451 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~sp-d~~~las~~~dg~i~iwd~~~~~~~~---~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~ 451 (1097)
++.+|.+.|+.+.|+| +..+||+|+.|..|+||.+..|-... ....+.+..-.|.++.|+|.... |+..+..|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg--il~s~a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG--ILASGAHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc--eEEeccCce
Confidence 4789999999999999 77899999999999999998543211 11123344557899999998774 455556789
Q ss_pred EEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCcee-eecCCCC-ceEEEEEccCCCEE
Q 001336 452 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV-DYDAPGH-SSTMMAYSADGARL 529 (1097)
Q Consensus 452 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~-~v~~~~~s~~~~~l 529 (1097)
++|||+.+++.+.++.+|.+.|.++.| +.||.+|++++.|+.|+|||.+...... ..+.|++ .-..+.|.-+-..|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 999999999999999999999999988 7788999999999999999998654433 3344443 44567787777788
Q ss_pred EEeeeCCCCCceEEEEeCCCC-eeeEEecCCCCcceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEE--EEecCCCC
Q 001336 530 FSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLA--SIDADGGL 605 (1097)
Q Consensus 530 ~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~--~~~~~~~~ 605 (1097)
++.+.+......+++||.+.. ..++++.-.....+..--|.||.+.++.++ .+.+++.+.+...++.. .+.... .
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tl-e 308 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTL-E 308 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcc-h
Confidence 888877767778999998764 455555544444566667899998887777 78889999887655321 111110 1
Q ss_pred CCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEeccccccccccccccc-ccCCccccc---------------c
Q 001336 606 QASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAI-VKAPAIGTF---------------G 669 (1097)
Q Consensus 606 ~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------------~ 669 (1097)
......+.-|...+-+..+. ..+++.+... ..+.. .. .++...+ .+..++.+. |
T Consensus 309 ~~~~GA~lvpkral~VM~~E--V~rvlQLt~~-~ivPi-~y------~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG 378 (1012)
T KOG1445|consen 309 EQTLGATLVPKRALHVMDGE--VDRVLQLTKS-SIVPI-PY------IVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNG 378 (1012)
T ss_pred hhhccceecchhhhhhcchh--hhhheecccC-ceeec-cc------ccchhhhhhhhhhhCccccCCccCcCccceecC
Confidence 11123333332221111111 1122222211 00000 00 0000000 000000000 0
Q ss_pred c--Cc--cccccccccc----ccccc-----ccccC----CCCCCCccccCcccccccccccccccccc---cCCCceee
Q 001336 670 S--AN--ANVGTSLGER----TAPAA-----AMVGM----SNDSRNFTDVKPKIADEAVEKSRIWKLTE---ITEPSQCR 729 (1097)
Q Consensus 670 ~--~~--~~~~~~~~~~----~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~d~~i~~w~~~~---~~~~~~~~ 729 (1097)
+ +. ++..|....+ ..+++ ....| .+-....+-.+ +....++ +=|... .......+
T Consensus 379 ~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n--~~~~~~~---~Pd~~~qpaV~~~~e~r 453 (1012)
T KOG1445|consen 379 TNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSN--NNSSSNN---VPDVQEQPAVPKKEEVR 453 (1012)
T ss_pred ccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCcccc--ccccccC---CCccccCCCcCcchhhh
Confidence 0 00 0111111111 00111 00011 10000000000 0001011 000000 00000111
Q ss_pred Ee-----ccCCCcCccceEEEEEcc-CCceeeeeccCcE----------------EEEeccCCCCCCc----c--Cc-cc
Q 001336 730 SL-----RLPDNLTAMRVSRLIYTN-SGLAILALASNAV----------------HKLWKWPRNERNS----T--GK-AT 780 (1097)
Q Consensus 730 ~~-----~~~~~~~~~~i~~l~~sp-dg~~l~~~~~dg~----------------i~vw~~~~~~~~~----~--~~-~~ 780 (1097)
.+ ..+...|.... ....+. ....+-+.+.... ..+-.-..++..| . |. +.
T Consensus 454 ~l~~~~~E~~~g~~~~~~-dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~s 532 (1012)
T KOG1445|consen 454 ELDYRPYEKENGVHTPNA-DADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPIS 532 (1012)
T ss_pred hhcccccccccCccCCCc-ccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCcc
Confidence 11 11111010000 000000 0000000000000 0000000000000 0 00 00
Q ss_pred ccc----------------CCcccCCCCCcccc-----ccCCCCCCCCCeeEEEEccCCCEEEEE---eCCeEEEEEcCC
Q 001336 781 TNQ----------------APQLWQPPSGILMT-----NDISDTNPEDAVPCFALSKNDSYVMSA---SGGKISLFNMMT 836 (1097)
Q Consensus 781 ~~~----------------~~~~w~~~~~~~~~-----~~~~~~~h~~~v~~l~~s~dg~~la~~---sdg~i~iwd~~~ 836 (1097)
++. .+.-|.-..|..-. ..+.+....-+-.+=-|+.+.+++|+- +.|.|-||++..
T Consensus 533 at~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~ 612 (1012)
T KOG1445|consen 533 ATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNE 612 (1012)
T ss_pred ccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCC
Confidence 000 00001000110000 000000011111233455666777753 378999999864
Q ss_pred -CceeEEeC---CCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccc-------eEEEEecccccCeEEEEEecC-CCE
Q 001336 837 -FKTMTTFM---PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD-------EVKTKLKGHQKRITGLAFSNT-LNV 904 (1097)
Q Consensus 837 -~~~~~~~~---~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~-------~~~~~l~~h~~~V~~l~~s~d-g~~ 904 (1097)
|++..... -....|+.+.|.|-|...||++++||.|++|.+..+ +....+.+|...|+++.|+|- ...
T Consensus 613 PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadv 692 (1012)
T KOG1445|consen 613 PGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADV 692 (1012)
T ss_pred CCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhH
Confidence 33222211 134569999999989999999999999999998754 345678899999999999984 368
Q ss_pred EEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-EeCCeEEEEeCCCcceeeeeeccCCC
Q 001336 905 LVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREAS 983 (1097)
Q Consensus 905 l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~ 983 (1097)
|++++.|.+|++||+.+.+. .....+|. +.|..++|||||+.+++ +.||+|+||.-.+++....-....-.
T Consensus 693 La~asyd~Ti~lWDl~~~~~-----~~~l~gHt---dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvg 764 (1012)
T KOG1445|consen 693 LAVASYDSTIELWDLANAKL-----YSRLVGHT---DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVG 764 (1012)
T ss_pred hhhhhccceeeeeehhhhhh-----hheeccCc---CceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCcc
Confidence 99999999999999998652 33445665 68999999999999999 79999999999877653222111113
Q ss_pred CCEEEEEEecCCCEEEEEecCC----eEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcE
Q 001336 984 GPITHATYSCDSQSIYVAFEEG----SVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGV 1059 (1097)
Q Consensus 984 ~~v~~v~~s~dg~~l~s~s~Dg----~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v 1059 (1097)
.+-..+.|.-||+++++.+.|+ .|.+||.++....-..... +... -..+.=.|.++.+-+|++|-.|..|
T Consensus 765 tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~--lDva----ps~LvP~YD~Ds~~lfltGKGD~~v 838 (1012)
T KOG1445|consen 765 TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQV--LDVA----PSPLVPHYDYDSNVLFLTGKGDRFV 838 (1012)
T ss_pred CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeee--eccc----CccccccccCCCceEEEecCCCceE
Confidence 4556788999999999888774 5888888765432111100 0000 0011113456567799999999999
Q ss_pred EEEecCCCCcccCCCCCCC
Q 001336 1060 YIIEPLEAEGRWGTSPPNE 1078 (1097)
Q Consensus 1060 ~~W~~~~~~~~~~~~~~~~ 1078 (1097)
+.|++...++..-...|-+
T Consensus 839 ~~yEv~~esPy~lpl~~f~ 857 (1012)
T KOG1445|consen 839 NMYEVIYESPYLLPLAPFM 857 (1012)
T ss_pred EEEEecCCCceeeeccccc
Confidence 9999998888766655543
No 69
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.8e-28 Score=244.37 Aligned_cols=291 Identities=20% Similarity=0.335 Sum_probs=241.9
Q ss_pred CCceEEEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEE
Q 001336 308 LPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 387 (1097)
Q Consensus 308 ~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 387 (1097)
.+.+.+..+.|.+.|.+|... +++ +.+|++||.++|||........ ..||.++|.++
T Consensus 94 ~aP~pl~~~~hdDWVSsv~~~--~~~-IltgsYDg~~riWd~~Gk~~~~--------------------~~Ght~~ik~v 150 (423)
T KOG0313|consen 94 TAPKPLQCFLHDDWVSSVKGA--SKW-ILTGSYDGTSRIWDLKGKSIKT--------------------IVGHTGPIKSV 150 (423)
T ss_pred CCCCccccccchhhhhhhccc--Cce-EEEeecCCeeEEEecCCceEEE--------------------EecCCcceeee
Confidence 456777788899999999999 454 4799999999999987654322 68999999988
Q ss_pred EEccCC---CEEEEEECCCEEEEEEccCCeeee-eeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECC-----
Q 001336 388 MWSPDG---TLFGVAYSKHIVHLYTYHGGDELR-NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV----- 458 (1097)
Q Consensus 388 ~~spd~---~~las~~~dg~i~iwd~~~~~~~~-~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~----- 458 (1097)
+|.-.. ..+++++.|.++++|.++.++... ....-.||...|.+++..++|. .+++|+.|..|.||+..
T Consensus 151 ~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~ 228 (423)
T KOG0313|consen 151 AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEED 228 (423)
T ss_pred EEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccc
Confidence 886433 369999999999999998775432 1222349999999999999999 89999999999999932
Q ss_pred --------------------CCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceE
Q 001336 459 --------------------TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSST 518 (1097)
Q Consensus 459 --------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 518 (1097)
++.++-++.||..+|.++.|.. ...+++++.|.+|+.||+.+++....+.. ...+.
T Consensus 229 ~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~ 304 (423)
T KOG0313|consen 229 ELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLN 304 (423)
T ss_pred cccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeec-Cccee
Confidence 1234567899999999999954 26899999999999999999888877654 45789
Q ss_pred EEEEccCCCEEEEeeeCCCCCceEEEEeCCCC---eeeEEecCCCCcceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc
Q 001336 519 MMAYSADGARLFSCGTNKEGESYLVEWNESEG---AVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVN 594 (1097)
Q Consensus 519 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 594 (1097)
++.++|..++|++++.+. .|++||.+++ ...+.+.+|.+ .|.++.|+|... .|++++.|+++++||+++.+
T Consensus 305 ~i~~~~~~~Ll~~gssdr----~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 305 CISYSPLSKLLASGSSDR----HIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred EeecccccceeeecCCCC----ceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 999999999999998644 6999999876 35678899988 999999999874 57788899999999999877
Q ss_pred -eEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001336 595 -LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 595 -~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~ 635 (1097)
++..+..| ...|.++.|+. +..|++|+.|.+|+|+...
T Consensus 380 ~plydI~~h--~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 380 APLYDIAGH--NDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CcceeeccC--CceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 89988866 77899999984 6689999999999998643
No 70
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.3e-29 Score=255.15 Aligned_cols=293 Identities=17% Similarity=0.239 Sum_probs=250.5
Q ss_pred CCCceEEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeE
Q 001336 307 DLPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN 385 (1097)
Q Consensus 307 ~~~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 385 (1097)
.+|......+. |.+.|..+.|-++... |++|+.|..|.+|++..++.... ..+.|..+.|+
T Consensus 162 ~lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~it 223 (459)
T KOG0288|consen 162 TLPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNIT 223 (459)
T ss_pred ccchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCcc
Confidence 34456666677 8999999999999653 59999999999999987763211 13788899999
Q ss_pred EEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001336 386 RVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI 465 (1097)
Q Consensus 386 ~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 465 (1097)
.+.|.++++.+++++.|+.+++|++...+... +|.||.+.|+++.|..... .+++|+.|.+|++||+..+.|.++
T Consensus 224 ~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 224 SIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred eeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheecc
Confidence 99999999999999999999999999876443 6999999999999998777 599999999999999999999887
Q ss_pred eecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEE
Q 001336 466 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 545 (1097)
Q Consensus 466 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 545 (1097)
+. ....+.+|+.. +..+++|-.|+.|++||++..........++ .|+++..+++|..|++++.| ..+.+.
T Consensus 299 ~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRD----dtl~vi 368 (459)
T KOG0288|consen 299 VL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRD----DTLKVI 368 (459)
T ss_pred cc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCC----Cceeee
Confidence 65 34456666653 2578999999999999999988888887766 99999999999999999754 469999
Q ss_pred eCCCCeeeEEecCCC---CcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEE
Q 001336 546 NESEGAVKRTYHGLG---KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAV 622 (1097)
Q Consensus 546 d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s 622 (1097)
|+++.+....+.... ....+.+.|+|++.|+++||.||.|+||++.++++...+........|++++|+|.|..+++
T Consensus 369 DlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Lls 448 (459)
T KOG0288|consen 369 DLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLS 448 (459)
T ss_pred ecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhc
Confidence 999998888876542 23467799999999999999999999999999999999987655557999999999999999
Q ss_pred EECCCcEEEE
Q 001336 623 STNDNGIKIL 632 (1097)
Q Consensus 623 ~~~dg~i~iw 632 (1097)
++.++.+.+|
T Consensus 449 adk~~~v~lW 458 (459)
T KOG0288|consen 449 ADKQKAVTLW 458 (459)
T ss_pred ccCCcceEec
Confidence 9999999999
No 71
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.9e-27 Score=217.52 Aligned_cols=310 Identities=17% Similarity=0.245 Sum_probs=240.2
Q ss_pred ceEEEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEE
Q 001336 310 KTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 389 (1097)
Q Consensus 310 ~~~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 389 (1097)
-+++.++.....|.+++|+|.|. |.|+|+...+.+|.....-..+... -+.....+....+-.+.|.+.|.|.+|
T Consensus 23 f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~w 97 (350)
T KOG0641|consen 23 FEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTAW 97 (350)
T ss_pred eEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEEe
Confidence 45667888899999999999999 6799999999998865432111000 000000001111124578999999999
Q ss_pred ccCCCEEEEEECCCEEEEEEccC--CeeeeeeeeeecccCcEEEEEEecC---CCcEEEEEEe-CCCcEEEEECCCCcee
Q 001336 390 SPDGTLFGVAYSKHIVHLYTYHG--GDELRNHLEIEAHVGSVNDLAFSYP---NKQLSVVTCG-EDRVIKVWDAVTGTKQ 463 (1097)
Q Consensus 390 spd~~~las~~~dg~i~iwd~~~--~~~~~~~~~l~~h~~~V~~l~~s~d---~~~~~l~s~s-~d~~i~iwd~~~~~~~ 463 (1097)
||+|++||+|+.|.+|++.-.+. ......-.++.-|.+.|..++|-.+ +.. +|++++ .|..|++-|..+|+..
T Consensus 98 s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 98 SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcc
Confidence 99999999999999999876543 3333334457889999999999754 223 566655 5889999999999999
Q ss_pred EEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecC-------CCCceEEEEEccCCCEEEEeeeCC
Q 001336 464 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-------PGHSSTMMAYSADGARLFSCGTNK 536 (1097)
Q Consensus 464 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~~ 536 (1097)
+.+.+|++.|.++- +-+|-.+++|+.|.+|++||++-..+...+.. +...|.+++..|.|++|+++..|.
T Consensus 177 ~a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds 253 (350)
T KOG0641|consen 177 HALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS 253 (350)
T ss_pred eeecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC
Confidence 99999999998874 23447899999999999999987766655432 124789999999999999987643
Q ss_pred CCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceEEEEecCCCCCCcceEE
Q 001336 537 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV----NLLASIDADGGLQASPCIR 612 (1097)
Q Consensus 537 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~ 612 (1097)
...+||++.++.++.|..|.. .|.++.|+|...++++++.|..|++-|+... -++..+. .|...+..+.
T Consensus 254 ----sc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~--ehkdk~i~~r 326 (350)
T KOG0641|consen 254 ----SCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA--EHKDKAIQCR 326 (350)
T ss_pred ----ceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE--eccCceEEEE
Confidence 588999999999999999987 9999999999999999999999999998642 1233333 3466778899
Q ss_pred EcCCCCEEEEEECCCcEEEEEcC
Q 001336 613 FNKEGILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 613 ~s~~~~~l~s~~~dg~i~iw~~~ 635 (1097)
|+|..--+++.+.|.++.+|.+.
T Consensus 327 wh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 327 WHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ecCccceeeeccCcceEEEeccC
Confidence 99998889999999999999753
No 72
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=6.3e-28 Score=233.37 Aligned_cols=308 Identities=16% Similarity=0.207 Sum_probs=239.1
Q ss_pred EEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCcc-ccccccCCCCCCeEEEEEccC
Q 001336 314 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMP-LQASLSSDYTASVNRVMWSPD 392 (1097)
Q Consensus 314 ~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~v~~spd 392 (1097)
..-.|++.+.+.+|||||. |+|+|+.|..|+|.|++.--... ..+-...+..... -....+..|.++|+++.|+|.
T Consensus 107 ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks--~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKS--KPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred EEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhc--chhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 3444999999999999998 77999999999999987211000 0000000000110 111247889999999999999
Q ss_pred CCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEe---ecC
Q 001336 393 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF---EGH 469 (1097)
Q Consensus 393 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~~h 469 (1097)
...|++|+.|++|+++|+......+.++.+ ....+|.++.|+|.|. +|+.|..-.++++||+.+-++...- .+|
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCccccc
Confidence 999999999999999999764432322223 3456899999999999 8999999999999999998876543 469
Q ss_pred CcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeec-CCC-CceEEEEEccCCCEEEEeeeCCCCCceEEEEeC
Q 001336 470 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-APG-HSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 547 (1097)
Q Consensus 470 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 547 (1097)
.+.|+++.+ ++.|.+.++++.||.|++||--..++...+. .|+ ..|.+..|..+|+++++.|. +..+++|.+
T Consensus 261 t~ai~~V~Y--s~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkLWEi 334 (430)
T KOG0640|consen 261 TGAITQVRY--SSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKLWEI 334 (430)
T ss_pred ccceeEEEe--cCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeeeeee
Confidence 999999988 5666899999999999999977777665543 333 38999999999999999886 447999999
Q ss_pred CCCeeeEEecCCCC----cceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEE
Q 001336 548 SEGAVKRTYHGLGK----RSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAV 622 (1097)
Q Consensus 548 ~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s 622 (1097)
.+++.+..+.|... ..-+...|+....+++.-. ..+.+.-||.+++..+..+.. +|.+.+..+.-+|.+.-+++
T Consensus 335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~FmT 413 (430)
T KOG0640|consen 335 STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPAFMT 413 (430)
T ss_pred cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCceee
Confidence 99999999987521 1122345666677777665 567899999999887776654 66889999999999999999
Q ss_pred EECCCcEEEEEc
Q 001336 623 STNDNGIKILAN 634 (1097)
Q Consensus 623 ~~~dg~i~iw~~ 634 (1097)
+++|..+|+|--
T Consensus 414 csdD~raRFWyr 425 (430)
T KOG0640|consen 414 CSDDFRARFWYR 425 (430)
T ss_pred ecccceeeeeee
Confidence 999999999963
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=3.2e-28 Score=275.63 Aligned_cols=306 Identities=19% Similarity=0.271 Sum_probs=248.7
Q ss_pred cCCCeeEEEEccCCCeEEEEEe--CCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGT--NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 395 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 395 (1097)
+...|.+++.+|||.. +|+|+ .||.++||+.+.=-... .-++. ..+........|.+.|+|+.|||||++
T Consensus 12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~~~----~~~~~---~l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLDEK----EEKNE---NLPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCcee-EecCCccccccceeeccccccchh----hhhhc---ccchhheeeccccCceeEEEECCCCCe
Confidence 3456899999999995 58999 89999999975311000 00000 011122236789999999999999999
Q ss_pred EEEEECCCEEEEEEccC----------C-----eeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001336 396 FGVAYSKHIVHLYTYHG----------G-----DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 460 (1097)
Q Consensus 396 las~~~dg~i~iwd~~~----------~-----~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 460 (1097)
||+|+.|+.|.||+... | +..+....+.+|...|..++|+|++. +|++++.|++|.|||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999873 0 11234556889999999999999999 8999999999999999999
Q ss_pred ceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCC------CCceEEEEEccCCCEEEEeee
Q 001336 461 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP------GHSSTMMAYSADGARLFSCGT 534 (1097)
Q Consensus 461 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~ 534 (1097)
+.+.++++|.+.|-.+.| +|-|+++++-+.|++|++|++...+....+..+ ...+..+.|||||.+|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~--DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSW--DPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEE--CCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 999999999999999998 667799999999999999997665554444332 225778999999999999876
Q ss_pred CCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCC-------------CC----EEEEEeCCCcEEEEECCCCceEE
Q 001336 535 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT-------------KN----RFLAAGDEFMIKFWDMDNVNLLA 597 (1097)
Q Consensus 535 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~----~l~~~~~dg~i~iwd~~~~~~~~ 597 (1097)
-+.+...+.+.+-.+.+.-..+-||.. ++.++.|+|. .+ .+++|+.|++|.||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 666777899999888888999999998 9999999882 11 57788899999999998888877
Q ss_pred EEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 598 SIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 598 ~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
.+..- ....|..++|+|||..|+++|.||+|.++.++..
T Consensus 319 vi~~l-f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNL-FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhh-hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 66432 2457999999999999999999999999998764
No 74
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=5.2e-28 Score=229.76 Aligned_cols=287 Identities=12% Similarity=0.139 Sum_probs=238.8
Q ss_pred EeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCC
Q 001336 315 TLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT 394 (1097)
Q Consensus 315 ~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~ 394 (1097)
.-+|..+++.+.|+.+|. ||.+++.|.++.||-..+|+.+.. +.||++.|+|+..+-+.+
T Consensus 6 l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s~ 65 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDSK 65 (327)
T ss_pred cccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCcc
Confidence 345999999999999999 678999999999999999998875 789999999999999999
Q ss_pred EEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEe-----CCCcEEEEECC-------CCce
Q 001336 395 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-----EDRVIKVWDAV-------TGTK 462 (1097)
Q Consensus 395 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s-----~d~~i~iwd~~-------~~~~ 462 (1097)
+|++|+.|.++++||+++|+++.. + .-..+|..+.|+++|+. ++.+. ..+.|.++|++ ..++
T Consensus 66 ~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 66 HLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred eeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 999999999999999999998763 2 35678999999999993 43332 34689999998 4566
Q ss_pred eEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceee-ecCCCCceEEEEEccCCCEEEEeeeCCCCCce
Q 001336 463 QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YDAPGHSSTMMAYSADGARLFSCGTNKEGESY 541 (1097)
Q Consensus 463 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 541 (1097)
...+..+...++.+.|.+ -+++|++|.+||.|.+||.+++..... ...|...|+.+++++|..++++++.|. +
T Consensus 140 ~~kI~t~~skit~a~Wg~--l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt----t 213 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGP--LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDT----T 213 (327)
T ss_pred eEEecCCccceeeeeecc--cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCc----c
Confidence 788888889999998854 458999999999999999998755544 467788999999999999999998754 5
Q ss_pred EEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCc--E------------EEEECCCCceEEEEecCCCCCC
Q 001336 542 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM--I------------KFWDMDNVNLLASIDADGGLQA 607 (1097)
Q Consensus 542 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i------------~iwd~~~~~~~~~~~~~~~~~~ 607 (1097)
-++||..+-+.++++.... ++++.+++|..++++.|+.... | ++|++-..+.+..+++| .++
T Consensus 214 akl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH--FGP 289 (327)
T KOG0643|consen 214 AKLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH--FGP 289 (327)
T ss_pred ceeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--ccC
Confidence 8999999999999998764 8999999999888888774322 2 22222223345555644 889
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 608 SPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 608 v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
|++++|+|+|+..++|+.||.||+..+...
T Consensus 290 INsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 290 INSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred cceeEECCCCcccccCCCCceEEEEEeccc
Confidence 999999999999999999999999876554
No 75
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.7e-28 Score=249.22 Aligned_cols=283 Identities=20% Similarity=0.283 Sum_probs=239.9
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
....|++++|||...+=+|+.+. -.|.||+..+...... +..-...|.++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEEE
Confidence 46789999999977765555433 4689999887665432 344567899999999999999
Q ss_pred EEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEe
Q 001336 398 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC 477 (1097)
Q Consensus 398 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 477 (1097)
+|+..|.|+|+|+++...++ .+.+|+.+|..+.|+|+++. ++++|+.|+.+++||+.+......+.+|++.|.|.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999976643333 58899999999999998887 899999999999999999998779999999999999
Q ss_pred ecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC-eeeEEe
Q 001336 478 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-AVKRTY 556 (1097)
Q Consensus 478 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~ 556 (1097)
+++..+ ..++|||.||.|++||++.......-..|+.+|..+.+-|.|..+++++.+ .+++||+.+| +.+..+
T Consensus 161 ~~~~~~-hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-----~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPAND-HIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-----SVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCCC-eEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-----eEEEEEecCCceehhhh
Confidence 986544 799999999999999999886555555688899999999999999999743 5999999965 455555
Q ss_pred cCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001336 557 HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 634 (1097)
Q Consensus 557 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~ 634 (1097)
..|+. .|+|+++..++..|++++-|+.|++||+.+-+.+..+.. .++|.+++.+|+++.++.|..+|.+.+-+.
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCCceEEEecccceeeeehh
Confidence 55776 999999999999999999999999999999999988865 567999999999999999999998877543
No 76
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=3.1e-27 Score=224.53 Aligned_cols=235 Identities=13% Similarity=0.213 Sum_probs=201.9
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001336 376 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 455 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 455 (1097)
.+.||+.+++.+.++.+|.+|.+|+.|.++.||--.+|+.+. ++.||.+.|+|++...+.+ .++||+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 378999999999999999999999999999999988887665 6999999999999999999 89999999999999
Q ss_pred ECCCCceeEEeecCCcCeEEEeecccCCccEEEEEc-----CCCeEEEEEcC-------CCCceeeecCCCCceEEEEEc
Q 001336 456 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-----TDGKIKAWLYD-------NLGSRVDYDAPGHSSTMMAYS 523 (1097)
Q Consensus 456 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-----~dg~i~iwd~~-------~~~~~~~~~~~~~~v~~~~~s 523 (1097)
|+++|+++.+++ ...+|..+.|++. |++++... ..+.|.++|++ ..++...+..+...++.+-|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~--gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFG--GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccC--CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999997 5678999988554 45555443 34679999988 344566777778899999999
Q ss_pred cCCCEEEEeeeCCCCCceEEEEeCCCCe-eeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 001336 524 ADGARLFSCGTNKEGESYLVEWNESEGA-VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 602 (1097)
Q Consensus 524 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 602 (1097)
|-++.|+++..++ .|..||.++++ .+.....|.. .|+.+.++++..++++++.|.+-++||..+-+.+.++..
T Consensus 157 ~l~~~ii~Ghe~G----~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t- 230 (327)
T KOG0643|consen 157 PLGETIIAGHEDG----SISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT- 230 (327)
T ss_pred ccCCEEEEecCCC----cEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeee-
Confidence 9999999997654 59999999984 4555566665 999999999999999999999999999999999998865
Q ss_pred CCCCCcceEEEcCCCCEEEEEECC
Q 001336 603 GGLQASPCIRFNKEGILLAVSTND 626 (1097)
Q Consensus 603 ~~~~~v~~v~~s~~~~~l~s~~~d 626 (1097)
..+|++.+++|....++.|+..
T Consensus 231 --e~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 231 --ERPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred --cccccceecccccceEEecCCc
Confidence 5589999999977777776543
No 77
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=4.7e-27 Score=222.64 Aligned_cols=274 Identities=17% Similarity=0.224 Sum_probs=234.5
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc-CCCEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTLF 396 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~l 396 (1097)
|...|.+|+|+.+|++| |+|+.|+++.||++...+.... ....+|.+.|-.++|+| ....+
T Consensus 19 ~~~~v~Sv~wn~~g~~l-asgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d~~ 80 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGTKL-ASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPDLF 80 (313)
T ss_pred hhhcceEEEEcccCcee-eecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCcce
Confidence 78899999999999975 9999999999999988754332 12679999999999998 67799
Q ss_pred EEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEE
Q 001336 397 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 476 (1097)
Q Consensus 397 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 476 (1097)
++++.|.+|++||+..+++.... . ..+.=..+.|+|+|+ +++.++.|..|.+.|.++.+.....+ ....++-+
T Consensus 81 atas~dk~ir~wd~r~~k~~~~i---~-~~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~ 153 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGKCTARI---E-TKGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEI 153 (313)
T ss_pred EEecCCceEEEEEeccCcEEEEe---e-ccCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceeeee
Confidence 99999999999999999887643 2 223334579999999 89999999999999999888776654 44557778
Q ss_pred eecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEe
Q 001336 477 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY 556 (1097)
Q Consensus 477 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 556 (1097)
+|+.+. ++++.....|.|.|-.+...+....+..|.....++.|+|+|+++++|+.| ..+.+||+..-.+++.+
T Consensus 154 ~w~~~n--d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsAD----AlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 154 SWNNSN--DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD----ALVSLWDVDELICERCI 227 (313)
T ss_pred eecCCC--CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecccc----ceeeccChhHhhhheee
Confidence 887433 455555556999999999999999999999999999999999999999864 46999999999999999
Q ss_pred cCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECC
Q 001336 557 HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 626 (1097)
Q Consensus 557 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d 626 (1097)
..+.= +|..+.|+.+|++|+++++|..|-|=++++|..+..++. .++.+.|+|+|...+||.+.+|
T Consensus 228 sRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~---~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 228 SRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC---EGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec---cCCceeEEecCCCceeeEEecC
Confidence 88876 999999999999999999999999999999999999976 4567899999999999988765
No 78
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.2e-27 Score=258.21 Aligned_cols=250 Identities=16% Similarity=0.263 Sum_probs=208.9
Q ss_pred CCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccC--------------------------------Ce-----------
Q 001336 378 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHG--------------------------------GD----------- 414 (1097)
Q Consensus 378 ~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~--------------------------------~~----------- 414 (1097)
..|.+.|+++.||+||+|||+||.|+.|+||.+.. ..
T Consensus 264 ~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 264 NAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred cccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 38999999999999999999999999999999866 00
Q ss_pred ---e-----------eeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecc
Q 001336 415 ---E-----------LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH 480 (1097)
Q Consensus 415 ---~-----------~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 480 (1097)
+ -+++..+.||.+.|..+.||.++ +|++++.|++||+|++...+|++.|. |.+.|+|++|+|
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP 419 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP 419 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence 0 01233478999999999999776 69999999999999999999999997 999999999998
Q ss_pred cCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCC-
Q 001336 481 KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL- 559 (1097)
Q Consensus 481 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~- 559 (1097)
..| +++++|+.||.||||++...+.. ....-..-|++++|.|||++.++|+.+| ..++|+....+....+.-+
T Consensus 420 vDD-ryFiSGSLD~KvRiWsI~d~~Vv-~W~Dl~~lITAvcy~PdGk~avIGt~~G----~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 420 VDD-RYFISGSLDGKVRLWSISDKKVV-DWNDLRDLITAVCYSPDGKGAVIGTFNG----YCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred cCC-CcEeecccccceEEeecCcCeeE-eehhhhhhheeEEeccCCceEEEEEecc----EEEEEEccCCeEEEeeeEee
Confidence 766 89999999999999999854433 3333346899999999999999998855 6999999887766554322
Q ss_pred ------CCcceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEE
Q 001336 560 ------GKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL 632 (1097)
Q Consensus 560 ------~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw 632 (1097)
....|+.+.|.|.. ..+++.+.|..|+|+|.++.+++..+++......-....|+.||++|+++++|..|+||
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 11269999988755 46888899999999999999999999876555555688999999999999999999999
Q ss_pred EcCCC
Q 001336 633 ANADG 637 (1097)
Q Consensus 633 ~~~~~ 637 (1097)
+....
T Consensus 574 ~~~~~ 578 (712)
T KOG0283|consen 574 KNDSF 578 (712)
T ss_pred eCCCC
Confidence 98543
No 79
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=6.8e-27 Score=226.37 Aligned_cols=274 Identities=18% Similarity=0.264 Sum_probs=219.3
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCC-ceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSR-ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 396 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 396 (1097)
..+.|.+|+|||....++++||-||+|++|+++.. ..+. +....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 45789999999977778899999999999999874 3322 1256799999999999999999
Q ss_pred EEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEE
Q 001336 397 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 476 (1097)
Q Consensus 397 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 476 (1097)
++|+.|+.+++||+.+++... +..|.++|.++.|-+...+..|+|||.|++|+.||.+...++.++. -.++++++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~~----v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVSQ----VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCeee----eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 999999999999999996433 6779999999999987766689999999999999999999998887 45678877
Q ss_pred eecccCCccEEEEEcCCCeEEEEEcCCCCceeeec--CCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC--ee
Q 001336 477 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD--APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG--AV 552 (1097)
Q Consensus 477 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~ 552 (1097)
..- . ..++.+..++.|.+|++++........ .-...+++++...|....+.++..| .+.+..+..+ +.
T Consensus 163 Dv~--~--pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG----rv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DVL--Y--PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG----RVAIQYIDDPNPKD 234 (347)
T ss_pred hcc--C--ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc----eEEEEecCCCCccC
Confidence 542 2 578888999999999997654433321 1233788999988888888887633 4555555444 44
Q ss_pred eEEecCCCC--------cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEE
Q 001336 553 KRTYHGLGK--------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST 624 (1097)
Q Consensus 553 ~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 624 (1097)
-.+|+.|.. ..|++++|+|....|+++|.||++.+||-+....+.....+ ..+|+|.+|+.+|.++|.+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--PQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--CCccceeEecCCCCEEEEEe
Confidence 445555542 24667899999999999999999999999888777776655 77999999999999888653
No 80
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=3.7e-26 Score=258.56 Aligned_cols=289 Identities=12% Similarity=0.097 Sum_probs=223.9
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc-CCCEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTLF 396 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~l 396 (1097)
+-..|....+++|+..+ ++++.+..+..|+...+..+. +.............+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~~-~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNT-IACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCCc-EeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 34566777788886644 677778888889876654321 11111111111224789999999999999 89999
Q ss_pred EEEECCCEEEEEEccCCeee----eeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcC
Q 001336 397 GVAYSKHIVHLYTYHGGDEL----RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 472 (1097)
Q Consensus 397 as~~~dg~i~iwd~~~~~~~----~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~ 472 (1097)
|+|+.|++|+|||+.++... .....+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 99999999999999865321 223468899999999999998644 7999999999999999999999999999999
Q ss_pred eEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCc-eEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCe
Q 001336 473 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHS-STMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 551 (1097)
Q Consensus 473 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 551 (1097)
|.+++|+ ++|.+|++++.|++|++||++++.....+..|.+. ...+.|.+++..+++++.++..++.|++||+++..
T Consensus 171 V~sla~s--pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWN--LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEE--CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 9999995 46689999999999999999998877777777653 45678999999999887666667889999998754
Q ss_pred -eeEEecCCCCcceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCC
Q 001336 552 -VKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 617 (1097)
Q Consensus 552 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 617 (1097)
.......+....+....|+++++.+++++ .|+.|++||+.+++++...... ...++..++|.|..
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPKW 315 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEecccc
Confidence 34444434433566678999999999988 6999999999999887766432 34567888898853
No 81
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=4.6e-27 Score=234.44 Aligned_cols=309 Identities=16% Similarity=0.255 Sum_probs=239.7
Q ss_pred CCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCC-cEEEEEEeCCCcEEEEE
Q 001336 378 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK-QLSVVTCGEDRVIKVWD 456 (1097)
Q Consensus 378 ~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~-~~~l~s~s~d~~i~iwd 456 (1097)
.-|.+.|.++... ++.+++|+.||.++|||.... ... .+.||.++|.+++|.-.+. ...+++++.|.++++|-
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk-~~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~ 175 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK-SIK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK 175 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecCCc-eEE---EEecCCcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence 4588999999887 889999999999999998753 333 5889999999888864333 12599999999999999
Q ss_pred CCCCcee----EEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEe
Q 001336 457 AVTGTKQ----YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC 532 (1097)
Q Consensus 457 ~~~~~~~----~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 532 (1097)
++.+... ..-.||...|.++.. .++|..+++|+.|.+|.+|+..+ .....++.... -+..+.
T Consensus 176 ~~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~-~~~~~~E~~s~-------~rrk~~---- 241 (423)
T KOG0313|consen 176 WNVGENKVKALKVCRGHKRSVDSVSV--DSSGTRFCSGSWDTMLKIWSVET-DEEDELESSSN-------RRRKKQ---- 241 (423)
T ss_pred ecCchhhhhHHhHhcccccceeEEEe--cCCCCeEEeecccceeeecccCC-Cccccccccch-------hhhhhh----
Confidence 8877543 344599999999987 66778999999999999998332 11111111100 000100
Q ss_pred eeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEE
Q 001336 533 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR 612 (1097)
Q Consensus 533 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 612 (1097)
-+-=...++.++..+.||.. .|.++.|++ ...+++++-|.+|+.||+.++..+..+.. ...++|++
T Consensus 242 ---------~~~~~~~~r~P~vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~---~ksl~~i~ 307 (423)
T KOG0313|consen 242 ---------KREKEGGTRTPLVTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT---NKSLNCIS 307 (423)
T ss_pred ---------hhhhcccccCceEEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec---CcceeEee
Confidence 01111234567788899988 999999988 67999999999999999999999988865 45789999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccC
Q 001336 613 FNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM 692 (1097)
Q Consensus 613 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1097)
.+|...+|++|+.|..|++||.+++...
T Consensus 308 ~~~~~~Ll~~gssdr~irl~DPR~~~gs---------------------------------------------------- 335 (423)
T KOG0313|consen 308 YSPLSKLLASGSSDRHIRLWDPRTGDGS---------------------------------------------------- 335 (423)
T ss_pred cccccceeeecCCCCceeecCCCCCCCc----------------------------------------------------
Confidence 9999999999999999999998765100
Q ss_pred CCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCC
Q 001336 693 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNE 772 (1097)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~ 772 (1097)
+...
T Consensus 336 -------------------------------------------------~v~~--------------------------- 339 (423)
T KOG0313|consen 336 -------------------------------------------------VVSQ--------------------------- 339 (423)
T ss_pred -------------------------------------------------eeEE---------------------------
Confidence 0000
Q ss_pred CCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCC-EEEEEe-CCeEEEEEcCCCc-eeEEeCCCCCC
Q 001336 773 RNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFK-TMTTFMPPPPA 849 (1097)
Q Consensus 773 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~la~~s-dg~i~iwd~~~~~-~~~~~~~~~~~ 849 (1097)
.+. +|...|.++.|+|... .|++++ |+++++||+++.+ .+..+.+|...
T Consensus 340 --------------------------s~~--gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK 391 (423)
T KOG0313|consen 340 --------------------------SLI--GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK 391 (423)
T ss_pred --------------------------eee--cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce
Confidence 022 2888899999998665 456777 9999999999877 89999999999
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEcc
Q 001336 850 ATFLAFHPQDNNIIAIGMEDSSIQIYNVR 878 (1097)
Q Consensus 850 i~~l~~sp~~~~~la~g~~dg~v~vwd~~ 878 (1097)
|.++.|. ++.++++|+.|.+|+|+.-.
T Consensus 392 vl~vdW~--~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 392 VLSVDWN--EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEecc--CCceEEeccCcceEEEeccc
Confidence 9999998 47799999999999998643
No 82
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.8e-27 Score=222.32 Aligned_cols=284 Identities=17% Similarity=0.266 Sum_probs=226.9
Q ss_pred eEEEEcc--CCCeEEEEEe-----CCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccC-CC
Q 001336 323 KSMDFHP--VQQILLVVGT-----NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-GT 394 (1097)
Q Consensus 323 ~~v~fsp--dg~~lla~gs-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-~~ 394 (1097)
.++.||| +++..+|++. ..|.+.|-++...+-+.. +. ...-.+.+..++||++ .+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~---------------s~d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQ---------------SYDTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EE---------------eeecccceeEeeecCCCcc
Confidence 3566666 3443333332 357889999874443321 11 1234578999999994 56
Q ss_pred EEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeE
Q 001336 395 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 474 (1097)
Q Consensus 395 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~ 474 (1097)
.+++++.||+++|||.... -.++..++.|...|.++.|++-.++ .++++|.|++|++|+...++.+.++.||...|+
T Consensus 75 ~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 7888999999999996433 3345568899999999999997776 677889999999999999999999999999999
Q ss_pred EEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCC-EEEEeeeCCCCCceEEEEeCCCC-ee
Q 001336 475 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGA-RLFSCGTNKEGESYLVEWNESEG-AV 552 (1097)
Q Consensus 475 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~-~~ 552 (1097)
..+|+|... +.+++++.|+++++||++.......+..|..++.++.|+.-.. .|++++. ++.|+.||++.- .+
T Consensus 152 ~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhcccc
Confidence 999988654 7999999999999999999888888999999999999997554 5566654 557999999875 56
Q ss_pred eEEecCCCCcceEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-ceEEEEecCCCCCCcceEEEcC-CCCEEEEEECCCcE
Q 001336 553 KRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNV-NLLASIDADGGLQASPCIRFNK-EGILLAVSTNDNGI 629 (1097)
Q Consensus 553 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~~dg~i 629 (1097)
+..+.+|.- .|+.+.|+|.. ..|++++.|-+++|||...+ ..+.+...| ..-+..+.|++ ++.++|+.+.|+.+
T Consensus 227 l~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 227 LFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred ceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccccce
Confidence 778888876 89999999976 67889999999999999854 455556655 66788899998 77899999999999
Q ss_pred EEEEc
Q 001336 630 KILAN 634 (1097)
Q Consensus 630 ~iw~~ 634 (1097)
+||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99984
No 83
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=5.6e-27 Score=265.55 Aligned_cols=304 Identities=19% Similarity=0.253 Sum_probs=239.8
Q ss_pred CccceEEEEEccCCceeeeec--cCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEc
Q 001336 738 TAMRVSRLIYTNSGLAILALA--SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALS 815 (1097)
Q Consensus 738 ~~~~i~~l~~spdg~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s 815 (1097)
+...|.++..+|||..+++|+ .||.++||+...--. ..+.++..-.+.+. ... .|.+.|.|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~-~m~--~h~~sv~CVR~S 78 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLC-TMD--DHDGSVNCVRFS 78 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhe-eec--cccCceeEEEEC
Confidence 345689999999999999999 799999998652100 01112222111111 122 399999999999
Q ss_pred cCCCEEEEEe-CCeEEEEEcC------------------CCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEE
Q 001336 816 KNDSYVMSAS-GGKISLFNMM------------------TFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYN 876 (1097)
Q Consensus 816 ~dg~~la~~s-dg~i~iwd~~------------------~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd 876 (1097)
+||++||+|+ |..|.||+.. .++++..+.+|.+.|..++|+| ++.+||+++.|++|.||+
T Consensus 79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn 157 (942)
T KOG0973|consen 79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWN 157 (942)
T ss_pred CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEc
Confidence 9999999999 6778999875 2347788999999999999999 999999999999999999
Q ss_pred cccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEE
Q 001336 877 VRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL 956 (1097)
Q Consensus 877 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 956 (1097)
..+.+.+.++++|.+.|..+.|.|-|+++||-+.|++|+||++...... +.+..+..+.........+.|||||.+|+
T Consensus 158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~--k~It~pf~~~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIE--KSITKPFEESPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceee--EeeccchhhCCCcceeeecccCCCcCeec
Confidence 9999999999999999999999999999999999999999997764432 23333434333345678999999999999
Q ss_pred E--Ee---CCeEEEEeCCCcceeeeeeccCCCCCEEEEEEec--------C-----CC----EEEEEecCCeEEEEeCCC
Q 001336 957 A--VH---ETQIAIYEAPKLECLKQFVPREASGPITHATYSC--------D-----SQ----SIYVAFEEGSVGVLTAST 1014 (1097)
Q Consensus 957 ~--~~---d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~--------d-----g~----~l~s~s~Dg~v~vwd~~~ 1014 (1097)
+ +. -..+.|.+-.+-+.-..+. ||.+++.++.|+| + .. .+|+|+.|++|.||....
T Consensus 236 s~nA~n~~~~~~~IieR~tWk~~~~Lv--GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGTWKVDKDLV--GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred chhhccCCcceeEEEecCCceeeeeee--cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 8 32 3468898888877777777 9999999999987 1 11 588999999999999877
Q ss_pred CceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCCC
Q 001336 1015 LRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1068 (1097)
Q Consensus 1015 ~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~~ 1068 (1097)
.+.+..+. .+ .+..|. .++|+| ||..|+++|.||+|.+..+++.|
T Consensus 314 ~RPl~vi~---~l---f~~SI~--DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 314 PRPLFVIH---NL---FNKSIV--DMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCchhhhh---hh---hcCcee--eeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 66653333 11 123344 459999 79999999999999999998655
No 84
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.8e-26 Score=218.74 Aligned_cols=248 Identities=16% Similarity=0.225 Sum_probs=212.5
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 456 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 456 (1097)
+.+|...|.+|+|+-+|..||+|+.|+++.+|++...+.. ......+|.+.|-.++|+|.... .+++++.|.+|++||
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-~~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-KELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-hhhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence 6789999999999999999999999999999999887533 33357799999999999998776 799999999999999
Q ss_pred CCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCC
Q 001336 457 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 536 (1097)
Q Consensus 457 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 536 (1097)
++++++........+.+. ++| .|+|.+++.++.|..|.+.|.++.+.....+. ...+..++|+.++.+++...
T Consensus 94 ~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~--- 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN--- 166 (313)
T ss_pred eccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec---
Confidence 999999998887766666 455 56778999999999999999987665544432 33677788887777666543
Q ss_pred CCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCC
Q 001336 537 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 616 (1097)
Q Consensus 537 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 616 (1097)
|.+.|.+.....-+++..+..|.. ...|+.|+|+|++|++|+.|-.+.+||++..-++..+.-+ .-+|..+.|+.+
T Consensus 167 -GlG~v~ILsypsLkpv~si~AH~s-nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl--dwpVRTlSFS~d 242 (313)
T KOG1407|consen 167 -GLGCVEILSYPSLKPVQSIKAHPS-NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL--DWPVRTLSFSHD 242 (313)
T ss_pred -CCceEEEEeccccccccccccCCc-ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc--cCceEEEEeccC
Confidence 355799988888999999999986 8889999999999999999999999999988888888755 668999999999
Q ss_pred CCEEEEEECCCcEEEEEcCCC
Q 001336 617 GILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 617 ~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
|++||+|+.|..|-|=++++|
T Consensus 243 g~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 243 GRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred cceeeccCccceEEeEecccC
Confidence 999999999999999888887
No 85
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.7e-27 Score=258.43 Aligned_cols=274 Identities=17% Similarity=0.245 Sum_probs=215.7
Q ss_pred cCccceEEEEEccCCceeeeeccCcEEEEeccCCCCC---------------CccC----------c----------ccc
Q 001336 737 LTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNER---------------NSTG----------K----------ATT 781 (1097)
Q Consensus 737 ~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~---------------~~~~----------~----------~~~ 781 (1097)
.|.+.|.++.||+||++||+|+.|+.|+||.+...+. ..++ + ...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5999999999999999999999999999999876210 0000 0 000
Q ss_pred ccCCcccCCCCCc---cccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeC
Q 001336 782 NQAPQLWQPPSGI---LMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHP 857 (1097)
Q Consensus 782 ~~~~~~w~~~~~~---~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp 857 (1097)
... .+.+..... .....+.| |.+.|..+.||.++ +|++++ |.+|+||++...+|+..|. |..-|+|++|+|
T Consensus 345 s~~-~~~p~~~f~f~ekP~~ef~G--Ht~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP 419 (712)
T KOG0283|consen 345 SPC-VLLPLKAFVFSEKPFCEFKG--HTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP 419 (712)
T ss_pred Ccc-ccCCCccccccccchhhhhc--cchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence 001 011111111 11122444 99999999999876 555666 9999999999999999998 999999999999
Q ss_pred CCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCC
Q 001336 858 QDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT 937 (1097)
Q Consensus 858 ~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 937 (1097)
.|.+|+++|+-||.|+||++...+++.-...+ .-|++++|+|||+..+.|+.+|..++|+....+......+....+..
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 99999999999999999999988877655555 77999999999999999999999999999987776665566555555
Q ss_pred CCccCCeEEEEcCCCc--EEEEEeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCC
Q 001336 938 ASALADTRVQFHLDQT--HLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL 1015 (1097)
Q Consensus 938 ~~~~~v~~l~~s~dg~--~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~ 1015 (1097)
.....|+.+.|.|... .|+++.|..|+|||....+++..+..-.-...-....|+.||++|+++++|..|+||+.+..
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 4445799999987544 78889999999999988888888873222445567889999999999999999999998554
Q ss_pred c
Q 001336 1016 R 1016 (1097)
Q Consensus 1016 ~ 1016 (1097)
.
T Consensus 579 ~ 579 (712)
T KOG0283|consen 579 N 579 (712)
T ss_pred c
Confidence 3
No 86
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.2e-25 Score=218.72 Aligned_cols=282 Identities=15% Similarity=0.255 Sum_probs=232.7
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
-...|+++.|+++|.+| ++++.|.+++|||..+++.+.. ...+...|..++|......+.
T Consensus 13 ~~~~i~sl~fs~~G~~l-itss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLL-ITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCCEE-EEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEE
Confidence 36789999999999965 5688899999999999988764 445667889999998888888
Q ss_pred EEEC--CCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEE
Q 001336 398 VAYS--KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 475 (1097)
Q Consensus 398 s~~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 475 (1097)
.++. |.+|+.-++.+.+.++ .+.||...|..++.+|-+. .+++++.|++|++||++..++...+.....+|
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi-- 145 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI-- 145 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc--
Confidence 7777 8899999999988776 5899999999999999998 89999999999999999888888776555555
Q ss_pred EeecccCCccEEEEEcCCCeEEEEEcCCCC--ceeeecC---CCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC
Q 001336 476 ICPHHKENIQFIFSTATDGKIKAWLYDNLG--SRVDYDA---PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 550 (1097)
Q Consensus 476 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 550 (1097)
++| ++.|-+++++...+.|++||++... +-..+.. ...+.+.+.|||||++++.+.. ...+.+.|.-+|
T Consensus 146 ~Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G 219 (311)
T KOG1446|consen 146 AAF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG 219 (311)
T ss_pred eeE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC
Confidence 455 7777888888887899999998652 2222322 2447899999999999998864 446999999999
Q ss_pred eeeEEecCCCCcc--eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCc
Q 001336 551 AVKRTYHGLGKRS--VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNG 628 (1097)
Q Consensus 551 ~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~ 628 (1097)
..+.++.++.... -...+|.|+++++++|+.||+|++|++++|+.+..+.+. +..++.|+.|+|.-.++++++ ..
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--s~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--SN 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--ce
Confidence 9999988876522 246789999999999999999999999999999999874 466889999999877776665 46
Q ss_pred EEEEEcC
Q 001336 629 IKILANA 635 (1097)
Q Consensus 629 i~iw~~~ 635 (1097)
+.+|-..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 7778554
No 87
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.2e-26 Score=259.99 Aligned_cols=277 Identities=17% Similarity=0.278 Sum_probs=244.7
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
+...+.+..|. ++. +++|+.|.+|++||..++..+.. -+.||.+.|++++|..-+.+|+
T Consensus 207 ~~~~~~~~q~~-~~~--~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~lv 265 (537)
T KOG0274|consen 207 DDHVVLCLQLH-DGF--FKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKLV 265 (537)
T ss_pred Ccchhhhheee-cCe--EEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEEE
Confidence 67789999999 443 68999999999999999987763 1789999999999988889999
Q ss_pred EEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEe
Q 001336 398 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC 477 (1097)
Q Consensus 398 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 477 (1097)
+|+.|.+++|||..+|++.. .+.+|...|.++...+ . ++++|+.|.+|++|++.++.++..+.+|.++|.++.
T Consensus 266 sgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~--~--~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 266 SGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDP--F--LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred EEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccC--c--eEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 99999999999999999877 5889999999998753 3 688999999999999999999999999999999998
Q ss_pred ecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC-eeeEEe
Q 001336 478 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-AVKRTY 556 (1097)
Q Consensus 478 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~ 556 (1097)
.. +.++++|+.|++|++||+.+.++...+.+|.+.|.++.+... ..+++++.|+ .|++||+++. +++.++
T Consensus 339 ~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~----~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 339 LD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDT----TIKVWDLRTKRKCIHTL 409 (537)
T ss_pred ec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeecc----ceEeecCCchhhhhhhh
Confidence 74 379999999999999999999999999999999999988766 8999998864 6999999999 999999
Q ss_pred cCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001336 557 HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 636 (1097)
Q Consensus 557 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~ 636 (1097)
.+|.. .+..+. ..+++|++++.|++|++||..+++++.++... +...|.++++. ...+++++.||.+++||+.+
T Consensus 410 ~~h~~-~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 410 QGHTS-LVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred cCCcc-cccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 99986 554444 45689999999999999999999999999874 35667777765 46889999999999999998
Q ss_pred C
Q 001336 637 G 637 (1097)
Q Consensus 637 ~ 637 (1097)
+
T Consensus 484 ~ 484 (537)
T KOG0274|consen 484 G 484 (537)
T ss_pred C
Confidence 8
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.5e-26 Score=236.08 Aligned_cols=283 Identities=16% Similarity=0.248 Sum_probs=232.3
Q ss_pred CccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccC
Q 001336 738 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 817 (1097)
Q Consensus 738 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 817 (1097)
..+.|.+++|+|...+=++....-.+.+|+.. +...... +. .....++++.|..|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~----------------------~~~~~k~-~s--rFk~~v~s~~fR~D 79 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSV----------------------TRSVRKT-FS--RFKDVVYSVDFRSD 79 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecc----------------------hhhhhhh-HH--hhccceeEEEeecC
Confidence 55789999999976654444444567776533 2222111 11 15778999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEE
Q 001336 818 DSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGL 896 (1097)
Q Consensus 818 g~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l 896 (1097)
|+++|+|+ .|.|+|||+.+...++.+.+|..++..+.|+|++++.+++|+.|+.+++||+.++.....+.+|++.|.+.
T Consensus 80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 99999999 79999999888778899999999999999999999999999999999999999998877999999999999
Q ss_pred EEecC-CCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceee
Q 001336 897 AFSNT-LNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLK 975 (1097)
Q Consensus 897 ~~s~d-g~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~ 975 (1097)
+|+|- +.+++|||.||+|++||+.... ........+ .+|..+.|-|.|..++++....|+|||+-+|....
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL 231 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh
Confidence 99986 4589999999999999998843 233343333 45999999999999999999999999999665544
Q ss_pred eeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEec
Q 001336 976 QFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLT 1055 (1097)
Q Consensus 976 ~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~ 1055 (1097)
.... .|...|+|+++..|++.|++++.|+.|+|||+.+.+.+..+..+ +.|.++++ +| |++.++.|-.
T Consensus 232 ~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~--------~pvLsiav--s~-dd~t~viGms 299 (487)
T KOG0310|consen 232 TSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP--------GPVLSIAV--SP-DDQTVVIGMS 299 (487)
T ss_pred hhhh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc--------cceeeEEe--cC-CCceEEEecc
Confidence 3332 48999999999999999999999999999999999998887744 56777755 47 6789999999
Q ss_pred CCcEEEEecC
Q 001336 1056 DGGVYIIEPL 1065 (1097)
Q Consensus 1056 Dg~v~~W~~~ 1065 (1097)
+|.+.+=+..
T Consensus 300 nGlv~~rr~~ 309 (487)
T KOG0310|consen 300 NGLVSIRRRE 309 (487)
T ss_pred cceeeeehhh
Confidence 9988776543
No 89
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.4e-25 Score=216.01 Aligned_cols=289 Identities=15% Similarity=0.183 Sum_probs=230.2
Q ss_pred CccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccC
Q 001336 738 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 817 (1097)
Q Consensus 738 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 817 (1097)
....|.++.|+++|..+++++.|.++++||...+ ..... +.. +...+..++|...
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g----------------------~~~~t-i~s--kkyG~~~~~Fth~ 67 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG----------------------KQVKT-INS--KKYGVDLACFTHH 67 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC----------------------ceeeE-eec--ccccccEEEEecC
Confidence 4678999999999999999999999999976532 22211 111 5667888888876
Q ss_pred CCEEEEEe---CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeE
Q 001336 818 DSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRIT 894 (1097)
Q Consensus 818 g~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~ 894 (1097)
...++.++ |.+|+..++.+.+.++-|.||...|+.++.+| .+..+++++.|++|++||++..++...+..-..+
T Consensus 68 ~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p-- 144 (311)
T KOG1446|consen 68 SNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP-- 144 (311)
T ss_pred CceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--
Confidence 66666554 78999999999999999999999999999999 7789999999999999999987776666544444
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEEEEeCCCcce
Q 001336 895 GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLEC 973 (1097)
Q Consensus 895 ~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~vwd~~~~~~ 973 (1097)
.++|.|+|-++|++.....|++||+..-+......+.+..+.. ...+.+.|||||++|+.+ ..+.+++.|.-+|..
T Consensus 145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~---~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDE---AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV 221 (311)
T ss_pred ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCc---cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE
Confidence 4789999999999988889999999986655555555553333 568999999999999885 678899999999998
Q ss_pred eeeeeccCCCC-CEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEE
Q 001336 974 LKQFVPREASG-PITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFAL 1052 (1097)
Q Consensus 974 ~~~~~~~~h~~-~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s 1052 (1097)
...+....... --.+.+|+||++++++|+.||+|.+|+++++..+..+... +.+.+..+ .|+| .+..-
T Consensus 222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~------~~~~~~~~--~fnP---~~~mf 290 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP------NGGPVSCV--RFNP---RYAMF 290 (311)
T ss_pred eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC------CCCCcccc--ccCC---ceeee
Confidence 88887432222 2257889999999999999999999999999999888843 23445444 7888 45666
Q ss_pred EecCCcEEEEecCCCC
Q 001336 1053 GLTDGGVYIIEPLEAE 1068 (1097)
Q Consensus 1053 ~~~Dg~v~~W~~~~~~ 1068 (1097)
.+.+..+-+|-+...+
T Consensus 291 ~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 291 VSASSNLVFWLPDEDA 306 (311)
T ss_pred eecCceEEEEeccccc
Confidence 6677789999888665
No 90
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=2.4e-26 Score=222.46 Aligned_cols=293 Identities=16% Similarity=0.271 Sum_probs=234.7
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccC------------Cee---eeeeeeeecccCcEEEEEEecCCCc
Q 001336 376 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHG------------GDE---LRNHLEIEAHVGSVNDLAFSYPNKQ 440 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~------------~~~---~~~~~~l~~h~~~V~~l~~s~d~~~ 440 (1097)
.+..|.+++.+.+|||||.++|+|+.|..|+|.|++. |.. -..+.++-.|...|+++.|+|...
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~- 185 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET- 185 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh-
Confidence 4778999999999999999999999999999999861 110 012346778999999999999999
Q ss_pred EEEEEEeCCCcEEEEECCCCceeEEee--cCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeec---CCCC
Q 001336 441 LSVVTCGEDRVIKVWDAVTGTKQYIFE--GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD---APGH 515 (1097)
Q Consensus 441 ~~l~s~s~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~ 515 (1097)
.|++|+.|++|+++|.......+-++ ....+|.++.|+|. |.+|+.|....++++||+++.++-..-. .|..
T Consensus 186 -ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs--GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 186 -ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS--GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred -eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC--CceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 99999999999999987654333222 24568999998654 5899999999999999999887766543 3556
Q ss_pred ceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEec-CCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001336 516 SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH-GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN 594 (1097)
Q Consensus 516 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 594 (1097)
.|+++.+++.|++.++++.|+ .|++||--++++++++. .|.+..|.+..|..+++++++.|.|..+++|.+.+++
T Consensus 263 ai~~V~Ys~t~~lYvTaSkDG----~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASKDG----AIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred ceeEEEecCCccEEEEeccCC----cEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 899999999999999998755 59999999999998885 4566689999999999999999999999999999999
Q ss_pred eEEEEecCCCCC---CcceEEEcCCCCEEEEEEC-CCcEEEEEcCCCceEEEEecccccccccccccccccCCccccccc
Q 001336 595 LLASIDADGGLQ---ASPCIRFNKEGILLAVSTN-DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGS 670 (1097)
Q Consensus 595 ~~~~~~~~~~~~---~v~~v~~s~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1097)
++..+.+.+..+ .-+...|+....++..-.. .+.+.-||..+.
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta--------------------------------- 385 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA--------------------------------- 385 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch---------------------------------
Confidence 999987653222 2234556666666555432 456777776655
Q ss_pred CccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccC
Q 001336 671 ANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS 750 (1097)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 750 (1097)
..+.+|.+ +|.+.++.+.-||.
T Consensus 386 -----------------------------------------dr~~l~sl-----------------gHn~a~R~i~HSP~ 407 (430)
T KOG0640|consen 386 -----------------------------------------DRVALLSL-----------------GHNGAVRWIVHSPV 407 (430)
T ss_pred -----------------------------------------hhhhhccc-----------------CCCCCceEEEeCCC
Confidence 12333333 48999999999999
Q ss_pred CceeeeeccCcEEEEec
Q 001336 751 GLAILALASNAVHKLWK 767 (1097)
Q Consensus 751 g~~l~~~~~dg~i~vw~ 767 (1097)
+..+++++.|-.+++|-
T Consensus 408 ~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 408 EPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCceeeecccceeeeee
Confidence 99999999999999994
No 91
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.8e-25 Score=217.55 Aligned_cols=304 Identities=18% Similarity=0.220 Sum_probs=224.7
Q ss_pred CCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccc
Q 001336 603 GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGER 682 (1097)
Q Consensus 603 ~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1097)
+|...|++++|+.||+.|++++.|++|++|++.+-. .+.|..
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~-----~~eHr~--------------------------------- 125 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFE-----NKEHRC--------------------------------- 125 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhh-----hhhhhH---------------------------------
Confidence 457799999999999999999999999999987521 111100
Q ss_pred cccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeec-cCc
Q 001336 683 TAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA-SNA 761 (1097)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~-~dg 761 (1097)
++ ..+ ..+..+.++|+||-+-+++.. ...
T Consensus 126 -------------------------------~R---------------~nv----e~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 126 -------------------------------IR---------------QNV----EYDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred -------------------------------hh---------------ccc----cCCCceEEEECCCcceEEEEEccCC
Confidence 00 000 123457889999987666554 467
Q ss_pred EEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCcee
Q 001336 762 VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM 840 (1097)
Q Consensus 762 ~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~ 840 (1097)
.+++|.+...+- |...- ...-||- -+ +. ..|.-.+..+-...++++|++++ |.+|.||++. |+.+
T Consensus 156 ~l~vyk~~K~~d---G~~~~--~~v~~D~--~~-----f~-~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L 221 (420)
T KOG2096|consen 156 KLCVYKLVKKTD---GSGSH--HFVHIDN--LE-----FE-RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLL 221 (420)
T ss_pred EEEEEEeeeccc---CCCCc--ccccccc--cc-----cc-hhcccceEEEeecCCceEEEEecCCCcEEEEecC-Ccee
Confidence 899997764321 11110 0011220 00 11 12667778888889999999999 8889999998 8999
Q ss_pred EEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcc---cc-----eEEEEecccccCeEEEEEecCCCEEEEEeCCC
Q 001336 841 TTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVR---VD-----EVKTKLKGHQKRITGLAFSNTLNVLVSSGADS 912 (1097)
Q Consensus 841 ~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~---~~-----~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg 912 (1097)
..+......-+..+.|| +|+++|+++..-.|+||.+- .| ..+..++||.+.|..++||++...++|.+.||
T Consensus 222 ~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG 300 (420)
T KOG2096|consen 222 QSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG 300 (420)
T ss_pred eeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence 99887777788899999 99999999999999999974 23 23467899999999999999999999999999
Q ss_pred cEEEEEcCCCcc--cceeeEeec-CCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeeeeeccCCCCCEEEE
Q 001336 913 QLCVWSTDGWEK--QASKFLTIP-NGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHA 989 (1097)
Q Consensus 913 ~i~iwd~~~~~~--~~~~~~~~~-~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v 989 (1097)
++++||++-.-. +..+.+... ......++....+.++|.|..|+++....+.+|..++|+....++ ..|.+.|+++
T Consensus 301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e-~~h~~~Is~i 379 (420)
T KOG2096|consen 301 KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELE-DIHSTTISSI 379 (420)
T ss_pred cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHH-HhhcCceeeE
Confidence 999999864111 111111111 000111134458999999999999999999999999998877776 3689999999
Q ss_pred EEecCCCEEEEEecCCeEEEEe
Q 001336 990 TYSCDSQSIYVAFEEGSVGVLT 1011 (1097)
Q Consensus 990 ~~s~dg~~l~s~s~Dg~v~vwd 1011 (1097)
+|++||++++|++ |..++|+.
T Consensus 380 s~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 380 SYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred EecCCCcEEeeec-ceeeeeec
Confidence 9999999999987 78888876
No 92
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-26 Score=245.79 Aligned_cols=248 Identities=19% Similarity=0.249 Sum_probs=209.3
Q ss_pred CCCCeE---EEEEc-cCCCEEEEEECCCEEEEEEccCCeee---eeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcE
Q 001336 380 YTASVN---RVMWS-PDGTLFGVAYSKHIVHLYTYHGGDEL---RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 452 (1097)
Q Consensus 380 h~~~V~---~v~~s-pd~~~las~~~dg~i~iwd~~~~~~~---~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i 452 (1097)
|...|. .+..+ |.++||.+||+||.|++|++...... .....++.|...|..++...+++ .|+++|.|-+|
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTV 97 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTV 97 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceE
Confidence 444444 44444 47788999999999999998754321 12345888999999999999998 79999999999
Q ss_pred EEEECCCC--ceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCcee----------eec-CCCCceEE
Q 001336 453 KVWDAVTG--TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV----------DYD-APGHSSTM 519 (1097)
Q Consensus 453 ~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----------~~~-~~~~~v~~ 519 (1097)
++|+...+ -++.++..|.+.|.|+++. ..+...+++||.|+.|.+||++++.... .+. ++...|++
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS 176 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS 176 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence 99999887 6788999999999999974 3444799999999999999999763311 112 44558999
Q ss_pred EEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001336 520 MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI 599 (1097)
Q Consensus 520 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 599 (1097)
++..+.|..+++|+..+ .|++||.++++.+..+.||.. .|..+..+++|..++++|.||+|++||+.-.+++.++
T Consensus 177 LA~N~t~t~ivsGgtek----~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 177 LAMNQTGTIIVSGGTEK----DLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY 251 (735)
T ss_pred eecCCcceEEEecCccc----ceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE
Confidence 99999998888887654 599999999999999999998 9999999999999999999999999999999999999
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 600 DADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 600 ~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
..| ...|.++..+|+-..+++|+.||.|..=|+.+.
T Consensus 252 ~vH--~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 252 IVH--KEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred Eec--cCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 877 567999999999999999999999998887664
No 93
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-25 Score=242.99 Aligned_cols=278 Identities=18% Similarity=0.267 Sum_probs=236.9
Q ss_pred eEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECC
Q 001336 323 KSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK 402 (1097)
Q Consensus 323 ~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~d 402 (1097)
+-+.|+..+ ++|+|. ...|.+|+..+++.... ..-+...|+++.|+++|.+||+|..+
T Consensus 181 nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred hHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecC
Confidence 356777554 456654 35699999999885442 22237899999999999999999999
Q ss_pred CEEEEEEccCCeeeeeeeeeec-ccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE-eecCCcCeEEEeecc
Q 001336 403 HIVHLYTYHGGDELRNHLEIEA-HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI-FEGHESPVYSICPHH 480 (1097)
Q Consensus 403 g~i~iwd~~~~~~~~~~~~l~~-h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~ 480 (1097)
|.|.|||..+.+.+. .+.+ |...|-+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|
T Consensus 239 g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkw-- 309 (484)
T KOG0305|consen 239 GTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKW-- 309 (484)
T ss_pred CeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEE--
Confidence 999999998876555 4667 99999999998 44 689999999999999998876655 8899999999999
Q ss_pred cCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCC-CEEEEeeeCCCCCceEEEEeCCCCeeeEEecCC
Q 001336 481 KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 559 (1097)
Q Consensus 481 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 559 (1097)
.+|+.++++|+.|+.+.|||......+..+..|...|..++|+|-. ..||+|+. ..+..|++||..++..+......
T Consensus 310 s~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdtg 387 (484)
T KOG0305|consen 310 SPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDTG 387 (484)
T ss_pred CCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEecccccC
Confidence 5667999999999999999998888999999999999999999954 56666654 56889999999999998887655
Q ss_pred CCcceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 560 GKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 560 ~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
. .|..+.|++..+.|+++. .++.|.||+..+.+.+..+.+| ...|..++++|||..+++|+.|.++++|++-+.
T Consensus 388 s--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH--~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 388 S--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH--TSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred C--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC--cceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 4 799999999997777754 6779999999999999999866 778999999999999999999999999998654
No 94
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=5.9e-25 Score=248.79 Aligned_cols=264 Identities=15% Similarity=0.208 Sum_probs=204.3
Q ss_pred CccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCcccc--ccCCCCCCCCCeeEEEEc
Q 001336 738 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT--NDISDTNPEDAVPCFALS 815 (1097)
Q Consensus 738 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~--~~~~~~~h~~~v~~l~~s 815 (1097)
+...|....+++|+..+++++.+.....|+...+. .-++....|+... ..+.+ |.+.|.+++|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~------------~v~~~~~~G~~~~~~~~l~G--H~~~V~~v~fs 84 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGST------------AVLKHTDYGKLASNPPILLG--QEGPIIDVAFN 84 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCce------------EEeeccccccCCCCCceEeC--CCCCEEEEEEc
Confidence 34556677788888888888888888888654210 1122333343222 12334 99999999999
Q ss_pred c-CCCEEEEEe-CCeEEEEEcCCC-------ceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEe
Q 001336 816 K-NDSYVMSAS-GGKISLFNMMTF-------KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL 886 (1097)
Q Consensus 816 ~-dg~~la~~s-dg~i~iwd~~~~-------~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l 886 (1097)
| ++++|++++ |++|++||+.++ +.+..+.+|...|.+++|+|.++.+|++|+.|++|+|||+.+++.+..+
T Consensus 85 P~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l 164 (493)
T PTZ00421 85 PFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI 164 (493)
T ss_pred CCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE
Confidence 9 889999999 999999999764 3567889999999999999944579999999999999999999999999
Q ss_pred cccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-E----eCC
Q 001336 887 KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-V----HET 961 (1097)
Q Consensus 887 ~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~----~d~ 961 (1097)
.+|...|.+++|+|+|.+|++++.|++|++||+.+++. +....+|.. .....+.|.+++..+++ + .|+
T Consensus 165 ~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-----v~tl~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr 237 (493)
T PTZ00421 165 KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-----VSSVEAHAS--AKSQRCLWAKRKDLIITLGCSKSQQR 237 (493)
T ss_pred cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-----EEEEecCCC--CcceEEEEcCCCCeEEEEecCCCCCC
Confidence 99999999999999999999999999999999988652 222233332 23456789998888776 3 378
Q ss_pred eEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEe-cCCeEEEEeCCCCceeeeeC
Q 001336 962 QIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAF-EEGSVGVLTASTLRLRCRIN 1022 (1097)
Q Consensus 962 ~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s-~Dg~v~vwd~~~~~~~~~~~ 1022 (1097)
.|++||+.+...........+...+....|++|+.+|++++ .|+.|++||+.+++......
T Consensus 238 ~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~ 299 (493)
T PTZ00421 238 QIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS 299 (493)
T ss_pred eEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence 99999998765433322223345677788999999999887 49999999999988765543
No 95
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.1e-24 Score=246.88 Aligned_cols=256 Identities=10% Similarity=0.112 Sum_probs=198.2
Q ss_pred EeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccC-CCEEEEEECCCEEEEEEccCCee-
Q 001336 338 GTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDE- 415 (1097)
Q Consensus 338 gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-~~~las~~~dg~i~iwd~~~~~~- 415 (1097)
|+.++.|.+|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 5567788888876544332 27899999999999996 89999999999999999986432
Q ss_pred e----eeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEc
Q 001336 416 L----RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA 491 (1097)
Q Consensus 416 ~----~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 491 (1097)
. .....+.+|...|.+++|+|++.. +|++++.|++|++||+.+++.+..+. |...|.+++| +++|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slsw--spdG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKW--NIKGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEE--CCCCCEEEEEe
Confidence 1 122357899999999999999874 56899999999999999999888776 6678999998 45678999999
Q ss_pred CCCeEEEEEcCCCCceeeecCCCCceEE-----EEEccCCCEEEEeeeCCCCCceEEEEeCCC-CeeeEEecCCCCc-ce
Q 001336 492 TDGKIKAWLYDNLGSRVDYDAPGHSSTM-----MAYSADGARLFSCGTNKEGESYLVEWNESE-GAVKRTYHGLGKR-SV 564 (1097)
Q Consensus 492 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~-~v 564 (1097)
.|+.|++||++++.....+..|.+.+.+ ..|++++.++++++.++..++.|++||++. .+++..+..+... .+
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 9999999999998888778777764332 345689999999988765567899999985 5555555433321 22
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCC
Q 001336 565 GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 617 (1097)
Q Consensus 565 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 617 (1097)
......+++.++++|+.|+.|++|++..+. +..+....+..++.+++|.|..
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 333345568888999999999999998764 4445444456678899999964
No 96
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.6e-25 Score=242.09 Aligned_cols=263 Identities=16% Similarity=0.275 Sum_probs=225.1
Q ss_pred CcceeecCCCCceEEEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccC
Q 001336 299 GQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSS 378 (1097)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1097)
.+..|+.....-..+..++ ...|+++.|+++|++ ||+|..+|.|.|||..+.+.+.. +.
T Consensus 198 ~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~-------------------~~ 256 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFG-EELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTRT-------------------LR 256 (484)
T ss_pred eEEEEecCCCceEEeEecC-CCceEEEEECCCCCE-EEEeecCCeEEEEehhhcccccc-------------------cc
Confidence 3445555554433444444 899999999999996 59999999999999998877654 45
Q ss_pred C-CCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001336 379 D-YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 457 (1097)
Q Consensus 379 ~-h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~ 457 (1097)
+ |...|.+++|+ +..+.+|+.|+.|..+|+...+.... ++.+|...|..+.|++|+. ++++|+.|+.+.|||.
T Consensus 257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~ 330 (484)
T KOG0305|consen 257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDG 330 (484)
T ss_pred CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccC
Confidence 5 99999999997 78899999999999999998775543 4889999999999999999 8999999999999999
Q ss_pred CCCceeEEeecCCcCeEEEeecccCCccEEEEEc--CCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeC
Q 001336 458 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA--TDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 535 (1097)
Q Consensus 458 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 535 (1097)
....++..+..|.+.|.+++|+|-.. .+|++|+ .|+.|++||..++...... ..+..|.++.|++..+.|++....
T Consensus 331 ~~~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~v-dtgsQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 331 LSPEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSV-DTGSQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred CCccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEeccc-ccCCceeeEEEcCCCCEEEEecCC
Confidence 88899999999999999999998776 4788874 6999999999976655544 456699999999999888877543
Q ss_pred CCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001336 536 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 593 (1097)
Q Consensus 536 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 593 (1097)
.+..|.+|+..+.+.+..+.+|.. .|..++++|+|..+++|+.|.++++|++-..
T Consensus 409 --s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 409 --SENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred --CCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 355799999999999999999998 8999999999999999999999999998765
No 97
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=232.32 Aligned_cols=310 Identities=16% Similarity=0.216 Sum_probs=230.5
Q ss_pred CcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEc
Q 001336 736 NLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALS 815 (1097)
Q Consensus 736 ~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s 815 (1097)
..|...|.++++.|.|.++++|+-|..|++||+..-.. .-.. .....+. ....|.++.||
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMda-----------------s~~~-fr~l~P~--E~h~i~sl~ys 223 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDA-----------------SMRS-FRQLQPC--ETHQINSLQYS 223 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccc-----------------cchh-hhccCcc--cccccceeeec
Confidence 45888999999999999999999999999999874211 1011 1111222 56789999999
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCCceeEE------------eCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccce-
Q 001336 816 KNDSYVMSAS-GGKISLFNMMTFKTMTT------------FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE- 881 (1097)
Q Consensus 816 ~dg~~la~~s-dg~i~iwd~~~~~~~~~------------~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~- 881 (1097)
+.|..|++.+ ....+|+|.+..+.... -++|...++|.+|+|.....+.+++.||+++||++..-+
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 9999888888 67899999866554433 356888999999999888899999999999999997643
Q ss_pred EEEEec-----ccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEE
Q 001336 882 VKTKLK-----GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL 956 (1097)
Q Consensus 882 ~~~~l~-----~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 956 (1097)
.+..++ +-.-+++.++|++||+++|+|+.||.|.+|+..+.... ..+.+...|.. +..|+++.||+||++|+
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~--p~~~vk~AH~~-g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR--PVMKVKDAHLP-GQDITSISFSYDGNYLL 380 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc--cceEeeeccCC-CCceeEEEeccccchhh
Confidence 222222 23446899999999999999999999999998553322 23344444442 24799999999999999
Q ss_pred E-EeCCeEEEEeCCCcc-eeeeeeccCCCCCEEEEEEecCCCEEEEEec------CCeEEEEeCCCCceeeeeCCCCcCC
Q 001336 957 A-VHETQIAIYEAPKLE-CLKQFVPREASGPITHATYSCDSQSIYVAFE------EGSVGVLTASTLRLRCRINPTAYLP 1028 (1097)
Q Consensus 957 ~-~~d~~v~vwd~~~~~-~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~------Dg~v~vwd~~~~~~~~~~~~~~~~~ 1028 (1097)
+ +.|+++++||+...+ ++..+......-+-+.++||||.++|++|.. .|++.+||-.+...+.++....
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~--- 457 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIST--- 457 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCC---
Confidence 9 899999999998754 4444432222446678999999999999874 4789999999998888887443
Q ss_pred CCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEE-ecCCCCc---ccCCCCCCC
Q 001336 1029 TNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYII-EPLEAEG---RWGTSPPNE 1078 (1097)
Q Consensus 1029 ~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W-~~~~~~~---~~~~~~~~~ 1078 (1097)
..|. .+.|+|. =+.+++|+.||+++++ |...... -.++-||.-
T Consensus 458 ----aSvv--~~~Whpk-LNQi~~gsgdG~~~vyYdp~~S~RGak~cv~k~~rk 504 (641)
T KOG0772|consen 458 ----ASVV--RCLWHPK-LNQIFAGSGDGTAHVYYDPNESIRGAKLCVVKPPRK 504 (641)
T ss_pred ----ceEE--EEeecch-hhheeeecCCCceEEEECccccccchhheeecCccc
Confidence 3343 5599995 5567778888888765 5543332 255556653
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.9e-25 Score=228.77 Aligned_cols=295 Identities=16% Similarity=0.231 Sum_probs=234.5
Q ss_pred ecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeecc----ccCccccccccCCCCCCeEEEEEccC
Q 001336 317 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELG----ACSMPLQASLSSDYTASVNRVMWSPD 392 (1097)
Q Consensus 317 ~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~V~~v~~spd 392 (1097)
.|..+|+||+++||+++. .+++.+|+|.=|++.+++.... +|+.. ....+.+..- .+|...|.+++.|+|
T Consensus 140 ~H~~s~~~vals~d~~~~-fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~D 213 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRV-FSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSD 213 (479)
T ss_pred cccCcceEEEeeccccce-eecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcCC
Confidence 399999999999999975 7999999999999999875421 22221 1122222221 489999999999999
Q ss_pred CCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcC
Q 001336 393 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 472 (1097)
Q Consensus 393 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~ 472 (1097)
|+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++.||.+.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd~ 288 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQDG 288 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence 9999999999999999999987665 5889999999999987766 6999999999999999999999999999999
Q ss_pred eEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCee
Q 001336 473 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV 552 (1097)
Q Consensus 473 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 552 (1097)
|.++... .-++.+..|+.|+++++|++. .+.+..+..+.+.+.+++|-.+ ..+++|+.++ .|.+|++.+.++
T Consensus 289 v~~IdaL--~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG----~IaLWs~~KKkp 360 (479)
T KOG0299|consen 289 VLGIDAL--SRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNG----SIALWSLLKKKP 360 (479)
T ss_pred eeeechh--cccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCc----eEEEeeecccCc
Confidence 9999763 333566667799999999994 4566667777778999998654 5677887644 699999999888
Q ss_pred eEEecCCCC-----------cceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceEEEEecCCCCCCcceEEEcCCC
Q 001336 553 KRTYHGLGK-----------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV----NLLASIDADGGLQASPCIRFNKEG 617 (1097)
Q Consensus 553 ~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~~s~~~ 617 (1097)
+.+....+. ..|++++..|..+.+++|+.+|.|++|-+..+ +++..+.. .+.|++++|+++|
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLAFSNSG 437 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEEEccCC
Confidence 776643221 16788999999999999999999999999877 45555543 5579999999999
Q ss_pred CEEEEE-ECCCcEEEEE
Q 001336 618 ILLAVS-TNDNGIKILA 633 (1097)
Q Consensus 618 ~~l~s~-~~dg~i~iw~ 633 (1097)
+.+++| +....+--|-
T Consensus 438 k~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 438 KRIVAGIGKEHRLGRWW 454 (479)
T ss_pred CEEEEecccccccceee
Confidence 966555 4444444443
No 99
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.1e-24 Score=199.46 Aligned_cols=302 Identities=13% Similarity=0.090 Sum_probs=227.0
Q ss_pred CccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCc-----c-ccccCCCCCCCCCeeE
Q 001336 738 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGI-----L-MTNDISDTNPEDAVPC 811 (1097)
Q Consensus 738 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~-----~-~~~~~~~~~h~~~v~~ 811 (1097)
....|++++|.|.|...++|+...+.+|...+.- -++..+. + ...-.+...|.+.|+|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l----------------~~~r~~hea~~~pp~v~~kr~khhkgsiyc 94 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPAL----------------IDLRHAHEAAKQPPSVLCKRNKHHKGSIYC 94 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccc----------------cCcccccccccCCCeEEeeeccccCccEEE
Confidence 5678999999999999999999999999765521 1111111 0 0000111238899999
Q ss_pred EEEccCCCEEEEEe-CCeEEEEEcCCCce-----eEEeCCCCCCeEEEEEeCC---CCCEEEEEE-CCCcEEEEEcccce
Q 001336 812 FALSKNDSYVMSAS-GGKISLFNMMTFKT-----MTTFMPPPPAATFLAFHPQ---DNNIIAIGM-EDSSIQIYNVRVDE 881 (1097)
Q Consensus 812 l~~s~dg~~la~~s-dg~i~iwd~~~~~~-----~~~~~~~~~~i~~l~~sp~---~~~~la~g~-~dg~v~vwd~~~~~ 881 (1097)
.+|||+|++|++|+ |.+|++..+..-.+ -..+.-|.+.|..++|..+ ++.+|++++ .|-.|++=|...|+
T Consensus 95 ~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 95 TAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred EEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 99999999999999 88898876543222 2346679999999999642 466888765 56678888888999
Q ss_pred EEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eC
Q 001336 882 VKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HE 960 (1097)
Q Consensus 882 ~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d 960 (1097)
..+.+.+|++.|.++- +=+|-++++|+.|.+|++||+.-..+....-.....+ ....+.|.+++..|.|++|+++ .|
T Consensus 175 ~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~-glessavaav~vdpsgrll~sg~~d 252 (350)
T KOG0641|consen 175 GFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDG-GLESSAVAAVAVDPSGRLLASGHAD 252 (350)
T ss_pred cceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCC-CcccceeEEEEECCCcceeeeccCC
Confidence 9999999999998863 3468899999999999999998754322111111111 1112678999999999999997 78
Q ss_pred CeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEE
Q 001336 961 TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVI 1040 (1097)
Q Consensus 961 ~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i 1040 (1097)
....+||+..+..+..+. .|+..|.++.|||...||++++.|..|++=|+... +-..+. ......|...+ |.+
T Consensus 253 ssc~lydirg~r~iq~f~--phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~--~~vv~ehkdk~--i~~ 325 (350)
T KOG0641|consen 253 SSCMLYDIRGGRMIQRFH--PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELP--IMVVAEHKDKA--IQC 325 (350)
T ss_pred CceEEEEeeCCceeeeeC--CCccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCc--eEEEEeccCce--EEE
Confidence 999999999999999987 79999999999999999999999999999998653 221111 11122366654 455
Q ss_pred EEcCCCCCEEEEEecCCcEEEEecC
Q 001336 1041 AGNPTDPNQFALGLTDGGVYIIEPL 1065 (1097)
Q Consensus 1041 ~~~p~~~~~l~s~~~Dg~v~~W~~~ 1065 (1097)
.|+|+ .--|++.+.|.++.+|-+.
T Consensus 326 rwh~~-d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 326 RWHPQ-DFSFISSSADKTATLWALN 349 (350)
T ss_pred EecCc-cceeeeccCcceEEEeccC
Confidence 99995 5778999999999999764
No 100
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=2.7e-26 Score=231.36 Aligned_cols=253 Identities=16% Similarity=0.236 Sum_probs=213.1
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 456 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 456 (1097)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....+|.|-.++|+++.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 67899999999999999999999999999999998776 334446888899999999999999 799999999999999
Q ss_pred CCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCC
Q 001336 457 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 536 (1097)
Q Consensus 457 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 536 (1097)
+.+.+...++.||++.|+++.|.-.. ..+++|+.|.+|+.||+....+...... ...+..+..+ +..++++..|
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~D- 321 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFD- 321 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccc-
Confidence 99999999999999999999885443 3499999999999999988665554432 3344455544 4455555544
Q ss_pred CCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC--CCCcceEEEc
Q 001336 537 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG--LQASPCIRFN 614 (1097)
Q Consensus 537 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s 614 (1097)
..|+.||.++..+......+. .|+++..++++..+.+++.|.++.+.|+.+.+....+...+. ....+.+.||
T Consensus 322 ---kkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 322 ---KKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred ---cceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 469999999999999988875 799999999999999999999999999999998888865432 2347899999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCceEEEEe
Q 001336 615 KEGILLAVSTNDNGIKILANADGIRLLRTV 644 (1097)
Q Consensus 615 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 644 (1097)
|++.|+++|+.||.|+||++.++ ++...+
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tg-KlE~~l 425 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTG-KLEKVL 425 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCc-eEEEEe
Confidence 99999999999999999999988 444444
No 101
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3e-25 Score=215.06 Aligned_cols=250 Identities=16% Similarity=0.157 Sum_probs=196.3
Q ss_pred cCCCCCCeEEEEEcc-CCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001336 377 SSDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 455 (1097)
Q Consensus 377 ~~~h~~~V~~v~~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 455 (1097)
-...++.|.+++||| ...++++++.||+|++|++........ +....|.++|.+++|+.||. .+++|+.|+.+++|
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW 99 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence 345778999999999 666777999999999999987322222 24667999999999999998 79999999999999
Q ss_pred ECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeC
Q 001336 456 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 535 (1097)
Q Consensus 456 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 535 (1097)
|+.+++ +..+..|.++|.++.|.....-..|++|+.|++|++||++.......+...+ .++++.. -..+++.+..
T Consensus 100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata- 174 (347)
T KOG0647|consen 100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATA- 174 (347)
T ss_pred EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEec-
Confidence 999994 5667789999999999777766789999999999999999888777776644 4444433 2334555543
Q ss_pred CCCCceEEEEeCCCCe-eeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEEEEecCCC-------C
Q 001336 536 KEGESYLVEWNESEGA-VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV--NLLASIDADGG-------L 605 (1097)
Q Consensus 536 ~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~-------~ 605 (1097)
+..|.+|+++.+. ..+.....-...+++++...+....+.|+-+|.+.|..++.+ +.-..++.|.. .
T Consensus 175 ---~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~V 251 (347)
T KOG0647|consen 175 ---ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDV 251 (347)
T ss_pred ---CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCce
Confidence 4469999997763 333344444447889999999988899999999999999886 44444555542 3
Q ss_pred CCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 606 QASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 606 ~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
..|++++|+|.-..|++++.||++.+||-...
T Consensus 252 YaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 252 YAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred EEecceEeecccceEEEecCCceEEEecchhh
Confidence 35789999999899999999999999996543
No 102
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.7e-26 Score=228.71 Aligned_cols=286 Identities=16% Similarity=0.249 Sum_probs=229.2
Q ss_pred eeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEE
Q 001336 421 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWL 500 (1097)
Q Consensus 421 ~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 500 (1097)
.|.||.+.|.|++=+|..-. .+++|+.||.|+|||+.+..++.+++.|.+.|..|++.. ..+++++.|++|+.|-
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 47899999999999998733 699999999999999999999999999999999999854 4689999999999998
Q ss_pred cCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCC-EEEEE
Q 001336 501 YDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAA 579 (1097)
Q Consensus 501 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~ 579 (1097)
++.. ....+ .....+..+.-+..+..++++|. .|.+||.+...++..+.-..+ .+.++.|+|-.. .|+++
T Consensus 136 ~~~~-p~~ti-lg~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 136 IDGP-PLHTI-LGKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASC 206 (433)
T ss_pred ccCC-cceee-eccccccccccccccccccccCc------eeeecccccCCccceeecCCC-ceeEEecCCCcchheeee
Confidence 8753 22222 22335666666777788888875 499999999999999887766 899999999875 45556
Q ss_pred eCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEeccccccccccccccc
Q 001336 580 GDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAI 659 (1097)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1097)
+.|+.|.+||++.+.++..+.. ...-+.++|+|++-.+++|+.|..++.+|+....+.+...
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi~---~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~--------------- 268 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVIL---TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH--------------- 268 (433)
T ss_pred ccCCceEEEecccCCccceeee---eccccceecCccccceeeccccccceehhhhhhcccchhh---------------
Confidence 6999999999999999988765 3345899999988899999999999999987653333222
Q ss_pred ccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCc
Q 001336 660 VKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTA 739 (1097)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 739 (1097)
.+|.
T Consensus 269 ----------------------------------------------------------------------------~dhv 272 (433)
T KOG0268|consen 269 ----------------------------------------------------------------------------KDHV 272 (433)
T ss_pred ----------------------------------------------------------------------------cccc
Confidence 1377
Q ss_pred cceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCC
Q 001336 740 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS 819 (1097)
Q Consensus 740 ~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 819 (1097)
+.|.++.|||.|+.+++|+-|.+|+||....+. +..... . .--..|.++.||.|.+
T Consensus 273 sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~-------------------SRdiYh---t--kRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 273 SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH-------------------SRDIYH---T--KRMQHVFCVKYSMDSK 328 (433)
T ss_pred eeEEEeccCCCcchhccccccceEEEeecCCCc-------------------chhhhh---H--hhhheeeEEEEecccc
Confidence 889999999999999999999999999766321 111110 0 0235688999999999
Q ss_pred EEEEEe-CCeEEEEEcCCCc
Q 001336 820 YVMSAS-GGKISLFNMMTFK 838 (1097)
Q Consensus 820 ~la~~s-dg~i~iwd~~~~~ 838 (1097)
++++|+ |+.|++|.....+
T Consensus 329 yi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 329 YIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred EEEecCCCcceeeeecchhh
Confidence 999999 7999999875443
No 103
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=5.6e-25 Score=223.04 Aligned_cols=241 Identities=17% Similarity=0.279 Sum_probs=199.8
Q ss_pred cCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEcc
Q 001336 737 LTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK 816 (1097)
Q Consensus 737 ~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 816 (1097)
||...|..+.|+|+...+++++.|..|+||..... ..... .. .|..+|+.+..+|
T Consensus 259 Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-------------------s~~~~----~~--~h~~~V~~ls~h~ 313 (506)
T KOG0289|consen 259 GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-------------------SEPTS----SR--PHEEPVTGLSLHP 313 (506)
T ss_pred CcceEEEEEEeccchhheeecCCcceEEeeccccc-------------------cCccc----cc--cccccceeeeecc
Confidence 47778999999999999999999999999976532 11111 11 2999999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCceeEEeCCC--CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCe
Q 001336 817 NDSYVMSAS-GGKISLFNMMTFKTMTTFMPP--PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRI 893 (1097)
Q Consensus 817 dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V 893 (1097)
.|.||++++ |++..+.|+.++.++...... .-.+++.+|+| ||.++++|..||.|+|||+.++..+..|.+|+++|
T Consensus 314 tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~v 392 (506)
T KOG0289|consen 314 TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPV 392 (506)
T ss_pred CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCce
Confidence 999999999 899999999999988776542 24589999999 99999999999999999999999999999999999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEEEEeCCCc-
Q 001336 894 TGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKL- 971 (1097)
Q Consensus 894 ~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~vwd~~~~- 971 (1097)
..++|+.+|-+||++++|+.|++||+...+ ..+.+...+.. ++..+.|.+.|.+|+.+ .+=+|++++-.+.
T Consensus 393 k~i~FsENGY~Lat~add~~V~lwDLRKl~--n~kt~~l~~~~-----~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~ 465 (506)
T KOG0289|consen 393 KAISFSENGYWLATAADDGSVKLWDLRKLK--NFKTIQLDEKK-----EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS 465 (506)
T ss_pred eEEEeccCceEEEEEecCCeEEEEEehhhc--ccceeeccccc-----cceeEEEcCCCCeEEeecceeEEEEEeccccc
Confidence 999999999999999999999999998755 33344444432 48999999999999995 4445555554433
Q ss_pred -ceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeC
Q 001336 972 -ECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTA 1012 (1097)
Q Consensus 972 -~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~ 1012 (1097)
.++..+. .|.+..+++.|..+.+++++++.|..++++.+
T Consensus 466 W~~~~~~~--~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 466 WTEIKELA--DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeeehhh--hcccccceeeecccceEEeeccchhheEEeec
Confidence 3444443 68889999999999999999999999888754
No 104
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.7e-25 Score=226.69 Aligned_cols=254 Identities=21% Similarity=0.270 Sum_probs=214.1
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeee--------------eee-ecccCcEEEEEEecCCCcE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNH--------------LEI-EAHVGSVNDLAFSYPNKQL 441 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~--------------~~l-~~h~~~V~~l~~s~d~~~~ 441 (1097)
...|.-.|.|++++||++++++++.||+|.=|++.+|+..+.. ..- .+|...+.+++.|+||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 5679999999999999999999999999999999988743100 001 37889999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEE
Q 001336 442 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA 521 (1097)
Q Consensus 442 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 521 (1097)
+|++|+.|..|.|||.++.+.++.+.+|.+.|.+++|.... ..+++++.|+.|++|+++.......+.+|...|.++.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 89999999999999999999999999999999999995544 6799999999999999998888888889999999998
Q ss_pred EccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 001336 522 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 601 (1097)
Q Consensus 522 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 601 (1097)
....++.+-+++. +.++++|++... ....|.++.. .+.|++|-.+ .++++|+++|.|.+|++.+.+++.+...
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~ee-sqlifrg~~~-sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPEE-SQLIFRGGEG-SIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccc----cceeEEEecccc-ceeeeeCCCC-CeeeEEEecc-cceeeccCCceEEEeeecccCceeEeec
Confidence 8888877777765 447999999543 3345566654 8889988654 6999999999999999999998887642
Q ss_pred C-C---------CCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEE
Q 001336 602 D-G---------GLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLL 641 (1097)
Q Consensus 602 ~-~---------~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 641 (1097)
. + +...|++++..|...++|+|+.+|.|++|.+.++.+.+
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i 416 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI 416 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc
Confidence 1 1 11278899999999999999999999999999885433
No 105
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.5e-25 Score=212.84 Aligned_cols=241 Identities=19% Similarity=0.261 Sum_probs=207.8
Q ss_pred CCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCC--EEEEEECCCcEEEEEcccc
Q 001336 804 NPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN--IIAIGMEDSSIQIYNVRVD 880 (1097)
Q Consensus 804 ~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~--~la~g~~dg~v~vwd~~~~ 880 (1097)
.|.+.|+++|. +|.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ ... .|.+|+.||.|.+|+....
T Consensus 41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred ccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCe
Confidence 49999999998 578999999 99999999999999999999999999999998 554 8999999999999999999
Q ss_pred eEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeC
Q 001336 881 EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHE 960 (1097)
Q Consensus 881 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d 960 (1097)
+++..+++|.+.|+.++.+|.|++.++.+.|+.+++||+-.|+... ++.+. + ..+.+.|+|.|.+++++..
T Consensus 118 ~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~--v~~L~--~-----~at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF--VLNLK--N-----KATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce--eeccC--C-----cceeeEEcCCCCEEEEEec
Confidence 9999999999999999999999999999999999999999987432 22221 1 1355999999999999989
Q ss_pred CeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEE
Q 001336 961 TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVI 1040 (1097)
Q Consensus 961 ~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i 1040 (1097)
..|-+|.+++......+.. ...+.++.|- ++..|++|..|+.|.+||.++....+.+. +|.++|..+..
T Consensus 189 ~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-------AH~~RVK~i~~ 257 (362)
T KOG0294|consen 189 NKIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-------AHENRVKDIAS 257 (362)
T ss_pred cEEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-------cchhheeeeEE
Confidence 9999999998888777652 3567777776 66788899999999999999977776666 78899998854
Q ss_pred EEcCCCCCEEEEEecCCcEEEEecCCCC
Q 001336 1041 AGNPTDPNQFALGLTDGGVYIIEPLEAE 1068 (1097)
Q Consensus 1041 ~~~p~~~~~l~s~~~Dg~v~~W~~~~~~ 1068 (1097)
--.| ++.+|+|+|.||.|++||+....
T Consensus 258 ~~~~-~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 258 YTNP-EHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred EecC-CceEEEEeccCceEEEEEccccc
Confidence 4445 67899999999999999998763
No 106
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.7e-23 Score=230.51 Aligned_cols=556 Identities=13% Similarity=0.153 Sum_probs=349.4
Q ss_pred EEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCc-EEEEEEeCCCcEEEEECCCCcee
Q 001336 385 NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQ-LSVVTCGEDRVIKVWDAVTGTKQ 463 (1097)
Q Consensus 385 ~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~-~~l~s~s~d~~i~iwd~~~~~~~ 463 (1097)
..-.||+|+++++.+..+ .|.||...+|+++. .+.+|..+++.+.+.|.... .++++++.||.|++||...+..+
T Consensus 20 ~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL 95 (792)
T ss_pred cccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence 345689999999888655 69999999999877 58999999999999987763 47889999999999999999999
Q ss_pred EEeecCCcCeEEEeecc--cCCccEEEEEcCCCe------------EEEEEcCCCCc-eeeecCCCCceEEEEEccCCCE
Q 001336 464 YIFEGHESPVYSICPHH--KENIQFIFSTATDGK------------IKAWLYDNLGS-RVDYDAPGHSSTMMAYSADGAR 528 (1097)
Q Consensus 464 ~~~~~h~~~v~~~~~~~--~~~~~~l~s~~~dg~------------i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~ 528 (1097)
+++..+. ++..+.+.+ -.....+..+..|.. ++-+.+.+... ...+......-..+.+++.|.+
T Consensus 96 kt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 96 KTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 9887443 333333210 000011111122111 11111111100 0001111112356788888888
Q ss_pred EEEeeeCCCCCceEEEEeCCCCe---eeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceEEEEecCC
Q 001336 529 LFSCGTNKEGESYLVEWNESEGA---VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN--VNLLASIDADG 603 (1097)
Q Consensus 529 l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~ 603 (1097)
...+.. ..+.+|+..+.. ..+....++...+.+.+++|++++++++..||.|.+|.--. +.....-..|-
T Consensus 175 ~~i~~~-----~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 175 KGIVHM-----CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred EEEEEe-----eeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 777653 348889887754 11222233333578999999999999999999999996433 22222222334
Q ss_pred CCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCcccccccccccc
Q 001336 604 GLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERT 683 (1097)
Q Consensus 604 ~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1097)
|...|++++|+++|.+|.+|+.+|.+.+|.+.++.+. +.
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq---fL-------------------------------------- 288 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ---FL-------------------------------------- 288 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCCcc---cc--------------------------------------
Confidence 5779999999999999999999999999999887311 10
Q ss_pred ccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEE
Q 001336 684 APAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVH 763 (1097)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i 763 (1097)
| .-...|..+.++||+...+....|+.|
T Consensus 289 --------------------------------------------------P--RLgs~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 289 --------------------------------------------------P--RLGSPILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred --------------------------------------------------c--ccCCeeEEEEEcCCCCeEEEEecCceE
Confidence 0 024678899999999999999999999
Q ss_pred EEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEE-EEeCCeEEEEEcCCCceeEE
Q 001336 764 KLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVM-SASGGKISLFNMMTFKTMTT 842 (1097)
Q Consensus 764 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la-~~sdg~i~iwd~~~~~~~~~ 842 (1097)
.+-....-+. .. +|.-....+... -. ...+-.+.++++|.-+.++ -+-.|.|++||+.+-+.+..
T Consensus 317 ~li~~~dl~~------k~--tIsgi~~~~~~~----k~--~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~ 382 (792)
T KOG1963|consen 317 HLIKASDLEI------KS--TISGIKPPTPST----KT--RPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYK 382 (792)
T ss_pred EEEeccchhh------hh--hccCccCCCccc----cc--cccccceeEEEcCCCCceeecCCCceEEEEeccccceeee
Confidence 8875542110 00 000000000000 00 1345567889999444444 44489999999988776665
Q ss_pred eCC-----CC------CCeEEEEEeCCCCCEEEEEE--------CCC--cEEEEEcccce----EEE-EecccccCeEEE
Q 001336 843 FMP-----PP------PAATFLAFHPQDNNIIAIGM--------EDS--SIQIYNVRVDE----VKT-KLKGHQKRITGL 896 (1097)
Q Consensus 843 ~~~-----~~------~~i~~l~~sp~~~~~la~g~--------~dg--~v~vwd~~~~~----~~~-~l~~h~~~V~~l 896 (1097)
+.. +. -.+++++.+. .|.+++++. .|| .+++|-..... +.. ....|...+...
T Consensus 383 ~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat 461 (792)
T KOG1963|consen 383 LQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVAT 461 (792)
T ss_pred EEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEE
Confidence 431 12 2378888888 688998864 233 57788765432 222 234587776666
Q ss_pred EEec-CCC-EEEEEeCCCcEEEEEcCCCcc-----cceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCC
Q 001336 897 AFSN-TLN-VLVSSGADSQLCVWSTDGWEK-----QASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAP 969 (1097)
Q Consensus 897 ~~s~-dg~-~l~s~~~Dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~ 969 (1097)
++.+ ... ..+|++.||.+++|-+...+. ..+.+..+...+. .+++.++|+.||..|+++.++.|.+||..
T Consensus 462 ~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~ 538 (792)
T KOG1963|consen 462 IFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTITIWDYD 538 (792)
T ss_pred EEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEEEEecCC
Confidence 6653 333 799999999999999844321 2233433333333 57999999999999999999999999999
Q ss_pred Cc-ceeeeeeccCCCCCEEEEEEec----CCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCC-------CCCCceee
Q 001336 970 KL-ECLKQFVPREASGPITHATYSC----DSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPT-------NPSLRVYP 1037 (1097)
Q Consensus 970 ~~-~~~~~~~~~~h~~~v~~v~~s~----dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~-------~h~~~v~~ 1037 (1097)
+. +...... .-..++..+.+.. ++. +.......+.+|++-+..+...+.....+-. .-+..|-+
T Consensus 539 ~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~~s~v~s 614 (792)
T KOG1963|consen 539 TKNELLCTEG--SRNWPIAELLFTAQTQNDGA--LVHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADGDSSVGS 614 (792)
T ss_pred Chhhhhcccc--ccccchHhHhhhcccccccc--eeeccCceEehHhhhhhheecchhhhhhhhcchhhhhhccccccCc
Confidence 84 3222221 1123444444433 332 2333467899999988877653221111111 01111211
Q ss_pred E---EEEEcCCCCCEEE--------EEecCCcEEEEecCCCC
Q 001336 1038 L---VIAGNPTDPNQFA--------LGLTDGGVYIIEPLEAE 1068 (1097)
Q Consensus 1038 l---~i~~~p~~~~~l~--------s~~~Dg~v~~W~~~~~~ 1068 (1097)
. .++|.| ..+. ..+.|++|.+++.+.++
T Consensus 615 ~~f~vi~~~p---~~~~~~k~~~~~f~~~~~ril~F~~~~pk 653 (792)
T KOG1963|consen 615 TAFAVICWLP---ELLLVVKSIEQIFRGRDSRILIFSGDSPK 653 (792)
T ss_pred cceEEEeecc---cchhhhhhhhhhcccccceEEEecCCCch
Confidence 1 234434 3333 67888888888887766
No 107
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.5e-25 Score=210.11 Aligned_cols=252 Identities=13% Similarity=0.222 Sum_probs=205.8
Q ss_pred eEEEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEc
Q 001336 311 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 390 (1097)
Q Consensus 311 ~~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 390 (1097)
.....+.-.+.+..|+|++.....+++++.||+++|||...... +...++.|..+|.++.|+
T Consensus 52 ~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn 113 (311)
T KOG0277|consen 52 QECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWN 113 (311)
T ss_pred EEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEeccc
Confidence 34445556789999999999988999999999999999543221 122478999999999999
Q ss_pred c-CCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecC
Q 001336 391 P-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH 469 (1097)
Q Consensus 391 p-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 469 (1097)
+ +++.+++++.|++|++|+...++.+. ++.||...|...+|+|...+ +++++|.|+++++||++.......+..|
T Consensus 114 ~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i~ah 189 (311)
T KOG0277|consen 114 TVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSIEAH 189 (311)
T ss_pred cccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEEEec
Confidence 9 66778888999999999998876555 69999999999999998776 8999999999999999865444558899
Q ss_pred CcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCc-eeeecCCCCceEEEEEccCCC-EEEEeeeCCCCCceEEEEeC
Q 001336 470 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADGA-RLFSCGTNKEGESYLVEWNE 547 (1097)
Q Consensus 470 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~ 547 (1097)
...|.++.|+.... ..++||+.|+.|+.||++..+. ..++.+|+-.|+.+.|||... .|++++. +.++++||.
T Consensus 190 ~~Eil~cdw~ky~~-~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~riw~~ 264 (311)
T KOG0277|consen 190 NSEILCCDWSKYNH-NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTVRIWDP 264 (311)
T ss_pred cceeEeecccccCC-cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceEEeccc
Confidence 99999999875544 7999999999999999997654 456777888999999999765 5666655 568999999
Q ss_pred CCC-eeeEEecCCCCcceEEEEEcCC-CCEEEEEeCCCcEEEEEC
Q 001336 548 SEG-AVKRTYHGLGKRSVGVVQFDTT-KNRFLAAGDEFMIKFWDM 590 (1097)
Q Consensus 548 ~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~ 590 (1097)
..+ ..+.++..|.. .+..+.|++. ..++++++-|+.++||+.
T Consensus 265 ~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 265 ERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 865 45555555554 7888888874 478999999999999984
No 108
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.8e-25 Score=216.88 Aligned_cols=333 Identities=14% Similarity=0.193 Sum_probs=249.9
Q ss_pred eeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001336 551 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK 630 (1097)
Q Consensus 551 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~ 630 (1097)
++++.+.||.+ .|+.++.....+.+.+++.|.+.+||.+++|+++..+.+| .+.|+++.|++.+.++++++.|++-.
T Consensus 139 ~lvre~~GHkD-GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH--~GSVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 139 RLVRELEGHKD-GIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGH--TGSVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred eehhhhccccc-ceeeehhhcCCcceeecccccceeEEeeccccceeeeccc--ccceeeEEeccccceEEEccCCcchH
Confidence 45677888887 8998888777788889999999999999999999999976 77999999999999999999999999
Q ss_pred EEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCccccccc
Q 001336 631 ILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEA 710 (1097)
Q Consensus 631 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1097)
||...-..+..+.. . ....+++
T Consensus 216 IW~~av~~~vP~~~-a------------------------------------------~~~hSsE--------------- 237 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNN-A------------------------------------------PSDHSSE--------------- 237 (481)
T ss_pred HHHHhhcCcCCCCC-C------------------------------------------CCCCCch---------------
Confidence 99753221000000 0 0000000
Q ss_pred ccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCC
Q 001336 711 VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP 790 (1097)
Q Consensus 711 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~ 790 (1097)
....--|- | ..-..-....|| .+|++
T Consensus 238 -eE~e~sDe------------------~-~~d~d~~~~sD~---------~tiRv------------------------- 263 (481)
T KOG0300|consen 238 -EEEEHSDE------------------H-NRDTDSSEKSDG---------HTIRV------------------------- 263 (481)
T ss_pred -hhhhcccc------------------c-ccccccccccCC---------ceeee-------------------------
Confidence 00000000 0 000000000111 12222
Q ss_pred CCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECC
Q 001336 791 PSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED 869 (1097)
Q Consensus 791 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~d 869 (1097)
....+.+ |...|.+..|-..|+.+++++ |.+..+||+++++.+..+.+|+.+.+.++-+| ..+++++.+.|
T Consensus 264 -----Pl~~ltg--H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrD 335 (481)
T KOG0300|consen 264 -----PLMRLTG--HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRD 335 (481)
T ss_pred -----eeeeeec--cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccC
Confidence 1112444 999999999999999999999 99999999999999999999999999999999 89999999999
Q ss_pred CcEEEEEcccc-eEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEE
Q 001336 870 SSIQIYNVRVD-EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQF 948 (1097)
Q Consensus 870 g~v~vwd~~~~-~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 948 (1097)
-+.++||+... ..+..|+||...|+++.|.-|. .+++|+.|.+|++||+..-+. .+...... .++..++.
T Consensus 336 tTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRs----plATIRtd----S~~NRvav 406 (481)
T KOG0300|consen 336 TTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRS----PLATIRTD----SPANRVAV 406 (481)
T ss_pred ceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccC----cceeeecC----CccceeEe
Confidence 99999999853 5678899999999999998764 788999999999999987331 12111111 45889999
Q ss_pred cCCCcEEEEE-eCCeEEEEeCCCcceeeee--eccCCCCCEEEEEEecCCC--EEEEEecCCeEEEEeCCCC
Q 001336 949 HLDQTHLLAV-HETQIAIYEAPKLECLKQF--VPREASGPITHATYSCDSQ--SIYVAFEEGSVGVLTASTL 1015 (1097)
Q Consensus 949 s~dg~~l~~~-~d~~v~vwd~~~~~~~~~~--~~~~h~~~v~~v~~s~dg~--~l~s~s~Dg~v~vwd~~~~ 1015 (1097)
+..+..|+.- .+++|++||++........ .-++|..-|.|++|+.+-- -|++++-|..+.=|.+...
T Consensus 407 s~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 407 SKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9999999994 6789999999865544333 2358999999999997654 3889999999999998653
No 109
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=3.7e-25 Score=228.75 Aligned_cols=302 Identities=19% Similarity=0.249 Sum_probs=232.1
Q ss_pred CceEEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEE
Q 001336 309 PKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 387 (1097)
Q Consensus 309 ~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 387 (1097)
|......+. |...|+++++.|.|-++ ++|+.|.+|++||++.-.... +.|+. +.-.....|.++
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR~-~sGs~Dy~v~~wDf~gMdas~-~~fr~-------------l~P~E~h~i~sl 220 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGARF-VSGSLDYTVKFWDFQGMDASM-RSFRQ-------------LQPCETHQINSL 220 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCcee-eeccccceEEEEecccccccc-hhhhc-------------cCccccccccee
Confidence 344555666 67889999999999975 899999999999998644322 12321 122344589999
Q ss_pred EEccCCCEEEEEECCCEEEEEEccCCeeee---------eeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECC
Q 001336 388 MWSPDGTLFGVAYSKHIVHLYTYHGGDELR---------NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 458 (1097)
Q Consensus 388 ~~spd~~~las~~~dg~i~iwd~~~~~~~~---------~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~ 458 (1097)
+||+.|..|++.+....++|+|-...+... .+..-+||...++|.+|+|+.+. .++|++.||++||||+.
T Consensus 221 ~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 221 QYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEecC
Confidence 999999999999999999999976544322 22235689999999999999988 79999999999999998
Q ss_pred CCce-eEEee-----cCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCcee---eecCCCC--ceEEEEEccCCC
Q 001336 459 TGTK-QYIFE-----GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV---DYDAPGH--SSTMMAYSADGA 527 (1097)
Q Consensus 459 ~~~~-~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~--~v~~~~~s~~~~ 527 (1097)
+.+. +..++ +..-+++.++| +++|..|++|..||.|.+|+........ ....|.. .|+++.||+||+
T Consensus 300 ~~k~q~qVik~k~~~g~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 300 NTKSQLQVIKTKPAGGKRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred CchhheeEEeeccCCCcccCceeeec--CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc
Confidence 6543 33332 23456788888 6777899999999999999976543322 2334444 899999999999
Q ss_pred EEEEeeeCCCCCceEEEEeCCCC-eeeEEecCCCC-cceEEEEEcCCCCEEEEEe------CCCcEEEEECCCCceEEEE
Q 001336 528 RLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGK-RSVGVVQFDTTKNRFLAAG------DEFMIKFWDMDNVNLLASI 599 (1097)
Q Consensus 528 ~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~ 599 (1097)
+|++-+.|. .+++||++.. +++....+... ..-+.++|+|+.+.|++|. ..|.+++||..+-..++.+
T Consensus 378 ~LlSRg~D~----tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 378 YLLSRGFDD----TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred hhhhccCCC----ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 999987644 6999999876 45555444322 2345689999999999986 3568999999999999998
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001336 600 DADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 634 (1097)
Q Consensus 600 ~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~ 634 (1097)
... ...|..+.|+|.-+.|++|+.||++++|=-
T Consensus 454 ~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 454 DIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred cCC--CceEEEEeecchhhheeeecCCCceEEEEC
Confidence 765 567889999998888999999999998743
No 110
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=1.1e-24 Score=246.37 Aligned_cols=279 Identities=14% Similarity=0.193 Sum_probs=238.4
Q ss_pred CccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccC
Q 001336 738 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 817 (1097)
Q Consensus 738 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 817 (1097)
+...+.+..+. +..+++++.+++|++|+ ..++..+...+.| |.+.|++++|..-
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~----------------------~~~~~~i~~~l~G--H~g~V~~l~~~~~ 260 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWD----------------------LNNGYLILTRLVG--HFGGVWGLAFPSG 260 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEee----------------------cccceEEEeeccC--CCCCceeEEEecC
Confidence 45567777777 55699999999998885 4555655555666 9999999999988
Q ss_pred CCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEE
Q 001336 818 DSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGL 896 (1097)
Q Consensus 818 g~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l 896 (1097)
+.++++|+ |.++++||..+++|...+.+|.+.|.++...+ .++++|+.|.+|++|++.++.++..+.+|.++|.++
T Consensus 261 ~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 261 GDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred CCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 89999999 99999999999999999999999999999865 688899999999999999999999999999999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-EeCCeEEEEeCCCc-cee
Q 001336 897 AFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKL-ECL 974 (1097)
Q Consensus 897 ~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~~d~~v~vwd~~~~-~~~ 974 (1097)
..+ +.++++|+.|++|++||+.+++ ++....+|. ..|.++.+... .+++. +.|+.|++||+.++ +++
T Consensus 338 ~~~--~~~lvsgs~d~~v~VW~~~~~~-----cl~sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~ 406 (537)
T KOG0274|consen 338 QLD--EPLLVSGSYDGTVKVWDPRTGK-----CLKSLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCI 406 (537)
T ss_pred Eec--CCEEEEEecCceEEEEEhhhce-----eeeeecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhh
Confidence 997 8899999999999999999755 677777877 68999988877 56666 68999999999999 888
Q ss_pred eeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEe
Q 001336 975 KQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGL 1054 (1097)
Q Consensus 975 ~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~ 1054 (1097)
..+. +|.+-+..+.+ .+++|++++.|++|++||..+++.++.+... |.+.|..++.. ...+++++
T Consensus 407 ~tl~--~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~------~~~~v~~l~~~-----~~~il~s~ 471 (537)
T KOG0274|consen 407 HTLQ--GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR------HVGGVSALALG-----KEEILCSS 471 (537)
T ss_pred hhhc--CCccccccccc--ccceeEeccccccEEEeecccCceeeeeccC------CcccEEEeecC-----cceEEEEe
Confidence 8887 88888866665 5789999999999999999999999888832 45667766331 36899999
Q ss_pred cCCcEEEEecCCCCccc
Q 001336 1055 TDGGVYIIEPLEAEGRW 1071 (1097)
Q Consensus 1055 ~Dg~v~~W~~~~~~~~~ 1071 (1097)
.||++.+||+...+..-
T Consensus 472 ~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 472 DDGSVKLWDLRSGTLIR 488 (537)
T ss_pred cCCeeEEEecccCchhh
Confidence 99999999999877654
No 111
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-24 Score=211.52 Aligned_cols=243 Identities=19% Similarity=0.240 Sum_probs=206.4
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 456 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 456 (1097)
+..|.+.|+++|. ++.++|+|+.|.+|+|||+....++. .+-.|.+.|+++.|.++-....|++|+.||.|.+|+
T Consensus 39 ~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 39 FSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred ccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 6789999999999 68999999999999999999876655 477799999999999987433599999999999999
Q ss_pred CCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCC
Q 001336 457 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 536 (1097)
Q Consensus 457 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 536 (1097)
.....++.++++|.+.|+.++++|++ ++.++.+.|+.++.||+-.++.-....... .-+.+.|+|.|.+++.++.+
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~~~- 189 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVSGRN- 189 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEEecc-
Confidence 99999999999999999999997765 788999999999999998887776665543 33459999999988888744
Q ss_pred CCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEE--c
Q 001336 537 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF--N 614 (1097)
Q Consensus 537 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~--s 614 (1097)
.|-+|.+.+......+.... .+.++.|. ++..|++|++|+.|.+||.+++.+...+..| ...|..+.+ .
T Consensus 190 ----~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH--~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 190 ----KIDIYQLDNASVFREIENPK--RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH--ENRVKDIASYTN 260 (362)
T ss_pred ----EEEEEecccHhHhhhhhccc--cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc--hhheeeeEEEec
Confidence 59999998887766665542 45566664 5679999999999999999999999999877 668888874 4
Q ss_pred CCCCEEEEEECCCcEEEEEcCCC
Q 001336 615 KEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 615 ~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
|++.+|++++.||.|++||+...
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CCceEEEEeccCceEEEEEcccc
Confidence 57889999999999999998765
No 112
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.9e-24 Score=219.15 Aligned_cols=283 Identities=15% Similarity=0.209 Sum_probs=243.3
Q ss_pred CCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEE
Q 001336 319 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 398 (1097)
Q Consensus 319 ~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 398 (1097)
...|+++...|... .+.+|+.|.++.++|...++.+.. +.||+-.|+.+.|+|+...+++
T Consensus 219 ~pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~ 278 (506)
T KOG0289|consen 219 TPGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVIT 278 (506)
T ss_pred CCCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheee
Confidence 45688888888733 568999999999999999887763 8999999999999999999999
Q ss_pred EECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeec--CCcCeEEE
Q 001336 399 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG--HESPVYSI 476 (1097)
Q Consensus 399 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~--h~~~v~~~ 476 (1097)
++.|..|+||......+.. ....|..+|+.+..+|.|. ||++++.|++..+.|+++|.++..... ..-.+++.
T Consensus 279 aSad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~ 353 (506)
T KOG0289|consen 279 ASADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSA 353 (506)
T ss_pred cCCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEe
Confidence 9999999999998766433 4678999999999999999 899999999999999999998876653 23447888
Q ss_pred eecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEe
Q 001336 477 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY 556 (1097)
Q Consensus 477 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 556 (1097)
+|+ +||.++.+|..|+.|++||+........+.+|.++|..++|+.+|-+|++++.|+ .|++||++.-+..+++
T Consensus 354 ~fH--pDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~----~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 354 AFH--PDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG----SVKLWDLRKLKNFKTI 427 (506)
T ss_pred eEc--CCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC----eEEEEEehhhccccee
Confidence 884 5668999999999999999999998889999999999999999999999998654 4999999999988888
Q ss_pred cCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001336 557 HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN--LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 634 (1097)
Q Consensus 557 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~ 634 (1097)
.......+.++.|.+.|.+++.++.|=.|++++-.+.. .+..+. .+.+..+++.|....+++++++.|..++++.+
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~--~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA--DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh--hcccccceeeecccceEEeeccchhheEEeec
Confidence 87776679999999999999999888778877755443 344444 33567889999999999999999999888754
No 113
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.4e-24 Score=211.29 Aligned_cols=311 Identities=16% Similarity=0.180 Sum_probs=205.7
Q ss_pred cccccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeee-eeeeeecccCcEEEEEEecCCCcEEEEEEeCCCc
Q 001336 373 QASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELR-NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV 451 (1097)
Q Consensus 373 ~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~-~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~ 451 (1097)
....+++|...|++++||.||++||+++.|++|+||+++.-.... +.....-.-+.-+.++|+||-+. +++++-...+
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s-~vv~~~~g~~ 156 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKS-VVVSVKRGNK 156 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcce-EEEEEccCCE
Confidence 334589999999999999999999999999999999997632110 00001111234688999999886 5666777779
Q ss_pred EEEEECCC---CceeEE--------e-ecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEE
Q 001336 452 IKVWDAVT---GTKQYI--------F-EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM 519 (1097)
Q Consensus 452 i~iwd~~~---~~~~~~--------~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 519 (1097)
+++|-+.. |..... | +.|...|..+-. ..++.+|++++.|..|.+|++. ++.+..+......-+.
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD 233 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc
Confidence 99998653 222111 1 235566666655 5667899999999999999998 5555555554455667
Q ss_pred EEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001336 520 MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI 599 (1097)
Q Consensus 520 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 599 (1097)
.+.||+|+++++++...| +.+|. ++|..+|.+ ..-..+..+
T Consensus 234 aavSP~GRFia~~gFTpD----VkVwE--------------------~~f~kdG~f---------------qev~rvf~L 274 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFTPD----VKVWE--------------------PIFTKDGTF---------------QEVKRVFSL 274 (420)
T ss_pred eeeCCCCcEEEEecCCCC----ceEEE--------------------EEeccCcch---------------hhhhhhhee
Confidence 778888888888775443 55554 334333321 111222333
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCcccccccc
Q 001336 600 DADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSL 679 (1097)
Q Consensus 600 ~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1097)
. +|...|..++|+++...+++.+.||+++|||.+-... . +...
T Consensus 275 k--GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~----~-~qDp------------------------------ 317 (420)
T KOG2096|consen 275 K--GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE----A-GQDP------------------------------ 317 (420)
T ss_pred c--cchhheeeeeeCCCcceeEEEecCCcEEEeeccceEe----c-CCCc------------------------------
Confidence 4 5588999999999999999999999999999753210 0 0000
Q ss_pred ccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeecc
Q 001336 680 GERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS 759 (1097)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 759 (1097)
...+....|.+.....-..+..+|+|+.|+.+..
T Consensus 318 ----------------------------------------------k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g 351 (420)
T KOG2096|consen 318 ----------------------------------------------KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG 351 (420)
T ss_pred ----------------------------------------------hHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC
Confidence 0000000111112233347899999997766554
Q ss_pred CcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEc
Q 001336 760 NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNM 834 (1097)
Q Consensus 760 dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sdg~i~iwd~ 834 (1097)
..+.+|.- ++|+.....-. .|...|.+++|+++|+++++++|..++++.-
T Consensus 352 -s~l~~~~s----------------------e~g~~~~~~e~--~h~~~Is~is~~~~g~~~atcGdr~vrv~~n 401 (420)
T KOG2096|consen 352 -SDLKVFAS----------------------EDGKDYPELED--IHSTTISSISYSSDGKYIATCGDRYVRVIRN 401 (420)
T ss_pred -CceEEEEc----------------------ccCccchhHHH--hhcCceeeEEecCCCcEEeeecceeeeeecC
Confidence 45666643 33433322222 2899999999999999999999999998863
No 114
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=8.7e-26 Score=223.73 Aligned_cols=283 Identities=14% Similarity=0.218 Sum_probs=230.7
Q ss_pred ecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEE
Q 001336 317 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 396 (1097)
Q Consensus 317 ~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 396 (1097)
+|.+.|.|++=+|..-..+|+|+.||.|+|||+...+++.. +..|.+.|..|++.. ..+
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~--~~~ 122 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ--TSF 122 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc--cce
Confidence 39999999999999856789999999999999998887664 778999999999977 789
Q ss_pred EEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEE
Q 001336 397 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 476 (1097)
Q Consensus 397 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 476 (1097)
++++.|.+|+.|.+... .++ ++.+ ...+..+.-+..+. .++|||. .|.|||.....++..+.--.+.|.++
T Consensus 123 ~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~sv 193 (433)
T KOG0268|consen 123 FTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSISSV 193 (433)
T ss_pred EEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecCCCceeEE
Confidence 99999999999998763 222 3332 34466666666666 6888886 58999999999999998888899999
Q ss_pred eecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC-eeeEE
Q 001336 477 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-AVKRT 555 (1097)
Q Consensus 477 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~ 555 (1097)
.|++... .+|++++.|+.|.+||++........... -.-..++|+|.+-.++++.. +..++.+|++.- +.+..
T Consensus 194 kfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~E----D~nlY~~DmR~l~~p~~v 267 (433)
T KOG0268|consen 194 KFNPVET-SILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANE----DHNLYTYDMRNLSRPLNV 267 (433)
T ss_pred ecCCCcc-hheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccc----cccceehhhhhhcccchh
Confidence 9987765 68889999999999999988776654432 24567899996666666643 557999999875 56677
Q ss_pred ecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001336 556 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 556 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~ 635 (1097)
+.+|.. .|..+.|+|.|..|++||.|.+|+||..+.+.-...+-. .....|.|+.|+.|.+++++||+|+.|++|...
T Consensus 268 ~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 268 HKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred hcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 777776 899999999999999999999999999988765444322 224568999999999999999999999999875
Q ss_pred CC
Q 001336 636 DG 637 (1097)
Q Consensus 636 ~~ 637 (1097)
..
T Consensus 346 As 347 (433)
T KOG0268|consen 346 AS 347 (433)
T ss_pred hh
Confidence 54
No 115
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7e-25 Score=212.75 Aligned_cols=296 Identities=16% Similarity=0.234 Sum_probs=241.0
Q ss_pred ceEEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEE
Q 001336 310 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 388 (1097)
Q Consensus 310 ~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 388 (1097)
..+++.+. |++.|+.++-..... ++.+++.|.+.+||.+++|.++.. +.||.+.|+|++
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence 44555555 999999999988777 789999999999999999999875 789999999999
Q ss_pred EccCCCEEEEEECCCEEEEEEc------cCC-------------------------------eeeeeeeeeecccCcEEE
Q 001336 389 WSPDGTLFGVAYSKHIVHLYTY------HGG-------------------------------DELRNHLEIEAHVGSVND 431 (1097)
Q Consensus 389 ~spd~~~las~~~dg~i~iwd~------~~~-------------------------------~~~~~~~~l~~h~~~V~~ 431 (1097)
|++.+.++++++.|++..||.. ... ....+...+.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999972 110 001134458899999999
Q ss_pred EEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCC-ceeee
Q 001336 432 LAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG-SRVDY 510 (1097)
Q Consensus 432 l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~ 510 (1097)
+.|...|+ .+++++.|.+..+||+++|+.+..+.||....+.++-+| ..+++++.+.|.+.++||++..- ....+
T Consensus 278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp--tQrLVvTsSrDtTFRLWDFReaI~sV~VF 353 (481)
T KOG0300|consen 278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP--TQRLVVTSSRDTTFRLWDFREAIQSVAVF 353 (481)
T ss_pred hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCC--cceEEEEeccCceeEeccchhhcceeeee
Confidence 99999999 699999999999999999999999999999999887754 44899999999999999998433 34568
Q ss_pred cCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCe-eeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001336 511 DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA-VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 589 (1097)
Q Consensus 511 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 589 (1097)
.+|...|+++.|..+. .+++++. +.+|++||+++.+ .+.++.... +++.++.+..+..++.--++..|++||
T Consensus 354 QGHtdtVTS~vF~~dd-~vVSgSD----DrTvKvWdLrNMRsplATIRtdS--~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDD-RVVSGSD----DRTVKVWDLRNMRSPLATIRTDS--PANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccccceeEEEEecCC-ceeecCC----CceEEEeeeccccCcceeeecCC--ccceeEeecCCceEEeccCCceEEEEe
Confidence 8889999999998755 5666664 5579999998764 455555432 788889988888888888999999999
Q ss_pred CCCCceEEEE---ecCCCCCCcceEEEcCCC--CEEEEEECCCcEEEEEcCCC
Q 001336 590 MDNVNLLASI---DADGGLQASPCIRFNKEG--ILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 590 ~~~~~~~~~~---~~~~~~~~v~~v~~s~~~--~~l~s~~~dg~i~iw~~~~~ 637 (1097)
++..++ ..+ .-.+|...|.|++|..+. .-|++++-|..+.-|++...
T Consensus 427 lnG~Rl-aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 427 LNGNRL-ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCCCcc-ccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 975443 333 223557789999998654 45788999999999987653
No 116
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=2.4e-24 Score=231.20 Aligned_cols=283 Identities=15% Similarity=0.296 Sum_probs=236.9
Q ss_pred eEEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEE-EE
Q 001336 311 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNR-VM 388 (1097)
Q Consensus 311 ~~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-v~ 388 (1097)
++.+.+. |...|..+++.+... ++++|.||++++|+-..++.+.. +.+.+|.+-|.+ ++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~~--i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGVC--IISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSIC 65 (745)
T ss_pred eeEEEeccCccchheeEecCCeE--EeecCCCCceeeeeccCcccccc-----------------eecccCcceeeccce
Confidence 4455666 999999999988874 58999999999999877665432 135678888888 88
Q ss_pred Ecc-CCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEee
Q 001336 389 WSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE 467 (1097)
Q Consensus 389 ~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 467 (1097)
+-+ ++-.|++|+.|++|.+|...+...+. +|.||...|.+++...++. ++|||.|.++++|- .+++...+.
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~ 137 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQ 137 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccC
Confidence 886 66679999999999999999876554 6999999999999877775 89999999999996 577788899
Q ss_pred cCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeC
Q 001336 468 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 547 (1097)
Q Consensus 468 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 547 (1097)
+|+..|++++..+. +.++||+.|.+|++|. .++....+.+|...|+.+++-+++. +++++. ++.|++|++
T Consensus 138 gH~asVWAv~~l~e---~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~-flScsN----Dg~Ir~w~~ 207 (745)
T KOG0301|consen 138 GHTASVWAVASLPE---NTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSH-FLSCSN----DGSIRLWDL 207 (745)
T ss_pred CcchheeeeeecCC---CcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCC-eEeecC----CceEEEEec
Confidence 99999999987443 3899999999999995 4667778888999999999988765 456654 557999999
Q ss_pred CCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCC
Q 001336 548 SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 627 (1097)
Q Consensus 548 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg 627 (1097)
+|+.+..+.+|.. .++++....++..++++++|++++||+.. ++.+.+..+ ...|.++.+-++|. |++|+.||
T Consensus 208 -~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--ttsiWsa~~L~NgD-Ivvg~SDG 280 (745)
T KOG0301|consen 208 -DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--TTSIWSAKVLLNGD-IVVGGSDG 280 (745)
T ss_pred -cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--ccceEEEEEeeCCC-EEEeccCc
Confidence 7899999999998 89999988888999999999999999976 788888766 44788888887775 67899999
Q ss_pred cEEEEEcCCC
Q 001336 628 GIKILANADG 637 (1097)
Q Consensus 628 ~i~iw~~~~~ 637 (1097)
.||||.....
T Consensus 281 ~VrVfT~~k~ 290 (745)
T KOG0301|consen 281 RVRVFTVDKD 290 (745)
T ss_pred eEEEEEeccc
Confidence 9999987643
No 117
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.4e-25 Score=233.16 Aligned_cols=287 Identities=20% Similarity=0.239 Sum_probs=232.6
Q ss_pred EEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCC
Q 001336 324 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 403 (1097)
Q Consensus 324 ~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg 403 (1097)
.+..++.+...|.+|+.||.|++|++........ .++. ..+..|.+.|+.++..-+|+.|++++.|-
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~~~-asme~HsDWVNDiiL~~~~~tlIS~SsDt 95 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TPYI-ASMEHHSDWVNDIILCGNGKTLISASSDT 95 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcc------------cchh-hhhhhhHhHHhhHHhhcCCCceEEecCCc
Confidence 5556655555568999999999999875433211 1111 12677999999999999999999999999
Q ss_pred EEEEEEccCCeeeeeeeeeecccCcEEEEEE-ecCCCcEEEEEEeCCCcEEEEECCCCc--eeE--------Eee-cCCc
Q 001336 404 IVHLYTYHGGDELRNHLEIEAHVGSVNDLAF-SYPNKQLSVVTCGEDRVIKVWDAVTGT--KQY--------IFE-GHES 471 (1097)
Q Consensus 404 ~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~-s~d~~~~~l~s~s~d~~i~iwd~~~~~--~~~--------~~~-~h~~ 471 (1097)
+|++|+...+. ..++.++..|.+.|.|++. .++.. ++++||-|+.|.+||+.+|. .+. .+. |+..
T Consensus 96 TVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 96 TVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred eEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 99999998774 2344468889999999999 66666 89999999999999999883 332 233 7889
Q ss_pred CeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCe
Q 001336 472 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 551 (1097)
Q Consensus 472 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 551 (1097)
.|++++. ++.|..+++|+..+.+++||.++.+....+.+|...|..+..++||+.+++++.|+ +|++||+...+
T Consensus 173 siYSLA~--N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDg----tIrlWdLgqQr 246 (735)
T KOG0308|consen 173 SIYSLAM--NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDG----TIRLWDLGQQR 246 (735)
T ss_pred ceeeeec--CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCc----eEEeeeccccc
Confidence 9999987 56668999999999999999999999999999999999999999999999998654 79999999999
Q ss_pred eeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEE
Q 001336 552 VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI 631 (1097)
Q Consensus 552 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~i 631 (1097)
++.++..|.. .++++..+|+-.++++|+.||.|+.=|+.+......+-.. ..+|..+..+...+-+-+++.|+.|+-
T Consensus 247 Cl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--daPv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 247 CLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--DAPVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred eeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--CCchhhhhhccccCCceeeecccccee
Confidence 9999999998 6999999999999999999999999999884332222212 345667776654444567788888888
Q ss_pred EEcC
Q 001336 632 LANA 635 (1097)
Q Consensus 632 w~~~ 635 (1097)
|...
T Consensus 324 W~~~ 327 (735)
T KOG0308|consen 324 WKLE 327 (735)
T ss_pred cCCc
Confidence 8654
No 118
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.5e-22 Score=222.99 Aligned_cols=517 Identities=14% Similarity=0.144 Sum_probs=330.3
Q ss_pred eecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCc-cEEEEEcCCCeEEEEE
Q 001336 422 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI-QFIFSTATDGKIKAWL 500 (1097)
Q Consensus 422 l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd 500 (1097)
+.|-...-..-.||+|++. + .+..+..|.||...+|.++..+.+|..++..+.+.+.... .++++++.||.|++||
T Consensus 12 lgg~n~~~~~avfSnD~k~--l-~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd 88 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKF--L-FLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWD 88 (792)
T ss_pred eccccceecccccccCCcE--E-EEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEec
Confidence 3333333445578999983 3 3344568999999999999999999999999998777654 5788999999999999
Q ss_pred cCCCCceeeecCCCCceEEEEEcc---CCCEEEEee-eCC--------CCCceEEEEeCCCCe--eeEEecCCCCcceEE
Q 001336 501 YDNLGSRVDYDAPGHSSTMMAYSA---DGARLFSCG-TNK--------EGESYLVEWNESEGA--VKRTYHGLGKRSVGV 566 (1097)
Q Consensus 501 ~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~-~~~--------~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~ 566 (1097)
.........+.... ++..+.+.| +-...+..+ .+. +...++.-+.+.+.. .......+. .-.+
T Consensus 89 ~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~--~~~~ 165 (792)
T KOG1963|consen 89 WSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ--EPKS 165 (792)
T ss_pred CCCcEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc--CCcc
Confidence 99877776665443 333333322 111122111 110 000011111111100 000011111 1345
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE--ecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEe
Q 001336 567 VQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI--DADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTV 644 (1097)
Q Consensus 567 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 644 (1097)
+.+++.|.+....- +..+.+|+..++...... ....|...+++.++||+++++|+|..||.|.+|.--..
T Consensus 166 I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------- 237 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------- 237 (792)
T ss_pred EEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-------
Confidence 67777776555554 567889988875511111 01123445789999999999999999999999963220
Q ss_pred cccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCC
Q 001336 645 ESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITE 724 (1097)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~ 724 (1097)
.. .+-+..+|
T Consensus 238 ~~---------------------------------------------------------------~~~t~t~l------- 247 (792)
T KOG1963|consen 238 SD---------------------------------------------------------------DSETCTLL------- 247 (792)
T ss_pred cc---------------------------------------------------------------ccccceEE-------
Confidence 00 00111111
Q ss_pred CceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCC
Q 001336 725 PSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTN 804 (1097)
Q Consensus 725 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 804 (1097)
+-|...|.+++|++||.+|++|+..|.+.+|.+.+ ++ ...++.
T Consensus 248 -----------HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T----------------------~~--kqfLPR-- 290 (792)
T KOG1963|consen 248 -----------HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET----------------------GK--KQFLPR-- 290 (792)
T ss_pred -----------EecccccceeEEecCCceEeecccceEEEEEeecC----------------------CC--cccccc--
Confidence 12778999999999999999999999999997653 22 111332
Q ss_pred CCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCC-----------CCCeEEEEEeCCCCCEEEEEECCCcE
Q 001336 805 PEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPP-----------PPAATFLAFHPQDNNIIAIGMEDSSI 872 (1097)
Q Consensus 805 h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~-----------~~~i~~l~~sp~~~~~la~g~~dg~v 872 (1097)
-.++|..+.+|||+.+.+... |+.|.+....+.....++.+. .+-.+.++++| ..+.++..+..|.|
T Consensus 291 Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~v 369 (792)
T KOG1963|consen 291 LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHV 369 (792)
T ss_pred cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceE
Confidence 678999999999999988877 999999988776665555432 22367789998 77788889999999
Q ss_pred EEEEcccceEEEEec-----------ccccCeEEEEEecCCCEEEEEeC--------CC--cEEEEEcCCCcccceeeEe
Q 001336 873 QIYNVRVDEVKTKLK-----------GHQKRITGLAFSNTLNVLVSSGA--------DS--QLCVWSTDGWEKQASKFLT 931 (1097)
Q Consensus 873 ~vwd~~~~~~~~~l~-----------~h~~~V~~l~~s~dg~~l~s~~~--------Dg--~i~iwd~~~~~~~~~~~~~ 931 (1097)
++||+.+.+.+..++ .+.-.+++++.+-.|.+++|.-. || .+++|-.......-.....
T Consensus 370 Q~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~ 449 (792)
T KOG1963|consen 370 QFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTK 449 (792)
T ss_pred EEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEE
Confidence 999998876655443 13345788888888999998642 33 4788987764433233344
Q ss_pred ecCCCCCCccCCeEEEEcCCCc-EEEE-EeCCeEEEEeCCCcceeee----e----eccCCCCCEEEEEEecCCCEEEEE
Q 001336 932 IPNGRTASALADTRVQFHLDQT-HLLA-VHETQIAIYEAPKLECLKQ----F----VPREASGPITHATYSCDSQSIYVA 1001 (1097)
Q Consensus 932 ~~~~~~~~~~~v~~l~~s~dg~-~l~~-~~d~~v~vwd~~~~~~~~~----~----~~~~h~~~v~~v~~s~dg~~l~s~ 1001 (1097)
+...|.. ..+..+.+++... ..++ +.||.++||-....+.+.. | ...-|..++++++||.||..|+ +
T Consensus 450 I~~PH~~--~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~ 526 (792)
T KOG1963|consen 450 INNPHGN--AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-V 526 (792)
T ss_pred EecCCCc--eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-E
Confidence 4455542 2233333444333 5555 5899999999843322111 1 1123688999999999997666 5
Q ss_pred ecCCeEEEEeCCC-CceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCCCccc
Q 001336 1002 FEEGSVGVLTAST-LRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRW 1071 (1097)
Q Consensus 1002 s~Dg~v~vwd~~~-~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~~~~~ 1071 (1097)
+.|++|.+||..+ ..+.+...... .|.++.-.. +-.+ ....+.....+.+.+|++.+....|
T Consensus 527 s~~~~Itiwd~~~~~~l~~~~~~~~-~~~~~~~~~-----~~~~--~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 527 SFDDTITIWDYDTKNELLCTEGSRN-WPIAELLFT-----AQTQ--NDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred ecCCEEEEecCCChhhhhccccccc-cchHhHhhh-----cccc--cccceeeccCceEehHhhhhhheec
Confidence 6688999999998 55555544222 111111100 1011 1233444556789999999999999
No 119
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.4e-23 Score=204.85 Aligned_cols=271 Identities=18% Similarity=0.274 Sum_probs=215.4
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
....|+++.|+|.+..|| +++-||++++||+...+... .-.|..++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~LL-vssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLL-VSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCcEE-EEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 357899999999988765 55699999999998875432 345889999999986 66799
Q ss_pred EEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEe
Q 001336 398 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC 477 (1097)
Q Consensus 398 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 477 (1097)
+|+.||.|+.+|+.++.... +..|..+|.|+.+++... .+++||.|++|++||.+......++. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 99999999999999987554 778999999999998777 79999999999999998766665555 344788885
Q ss_pred ecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCC--CCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC--eee
Q 001336 478 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP--GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG--AVK 553 (1097)
Q Consensus 478 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~ 553 (1097)
. .|+.|+.|+.|..+.+||+++.......... ...++++++-|++.-.+.++.+| ...+..+|.... ...
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieG--RVavE~~d~s~~~~skk 216 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEG--RVAVEYFDDSEEAQSKK 216 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecc--eEEEEccCCchHHhhhc
Confidence 4 3468999999999999999987766533222 23789999999888777777643 444555555411 223
Q ss_pred EEecCCCC--------cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEEC
Q 001336 554 RTYHGLGK--------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN 625 (1097)
Q Consensus 554 ~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~ 625 (1097)
..|+.|.. .+|++++|+|-...|++|+.||.|.+||+.+.+.+..+... ...|..++|+.+|..||.++.
T Consensus 217 yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 217 YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence 34444422 36888999999999999999999999999999998888654 567999999999999999874
No 120
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.4e-25 Score=205.39 Aligned_cols=254 Identities=18% Similarity=0.267 Sum_probs=210.4
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEec--CCCcEEEEEEeCCCcEE
Q 001336 376 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY--PNKQLSVVTCGEDRVIK 453 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~--d~~~~~l~s~s~d~~i~ 453 (1097)
+...|++.|..+...--|++||+|+.|++|+|+.++.+.......+|.||.++|+.++|.. -|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 4678999999999999999999999999999999998776666778999999999999987 677 899999999999
Q ss_pred EEECCCCc--eeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCC---ceeeecCCCCceEEEEEccC---
Q 001336 454 VWDAVTGT--KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG---SRVDYDAPGHSSTMMAYSAD--- 525 (1097)
Q Consensus 454 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~--- 525 (1097)
||.-.+|+ ..+....|...|++++|.|..-|-.|++++.||.|.+.+++... .......|...|++++|.|-
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 99988774 34567789999999999999999999999999999999988652 23345567778999999986
Q ss_pred C-----------CEEEEeeeCCCCCceEEEEeCCCC--eeeEEecCCCCcceEEEEEcCCC----CEEEEEeCCCcEEEE
Q 001336 526 G-----------ARLFSCGTNKEGESYLVEWNESEG--AVKRTYHGLGKRSVGVVQFDTTK----NRFLAAGDEFMIKFW 588 (1097)
Q Consensus 526 ~-----------~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iw 588 (1097)
| +.|++++.| +.|++|+...+ +..+++.+|.+ .|+.++|.|.- ..+++++.||+|.||
T Consensus 164 g~~~~~~~~~~~krlvSgGcD----n~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGCD----NLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred ccccccCcccccceeeccCCc----cceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 5 568888764 46999998875 45566888887 99999999964 579999999999999
Q ss_pred ECCCC-ceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001336 589 DMDNV-NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 636 (1097)
Q Consensus 589 d~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~ 636 (1097)
..+.. +.-...-.+.....+..+.|+..|+.|++++.|+.+.+|.-..
T Consensus 239 t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 87632 1111111223356789999999999999999999999997543
No 121
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=6.6e-24 Score=227.87 Aligned_cols=275 Identities=14% Similarity=0.195 Sum_probs=224.1
Q ss_pred CcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCcccc-ccCCCCCCCCCeeE-EE
Q 001336 736 NLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT-NDISDTNPEDAVPC-FA 813 (1097)
Q Consensus 736 ~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~h~~~v~~-l~ 813 (1097)
.+|...|..+++.+.. .+++++.||++++|+-.. ++.+. ..+.+ |.+.|.. ++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~----------------------~~~l~~~~~~~--~~g~i~~~i~ 65 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKG----------------------KQYLETHAFEG--PKGFIANSIC 65 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccC----------------------cccccceeccc--Ccceeeccce
Confidence 4689999988877655 699999999999995321 11111 11222 6666665 77
Q ss_pred Ecc-CCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEeccccc
Q 001336 814 LSK-NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQK 891 (1097)
Q Consensus 814 ~s~-dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~ 891 (1097)
|-+ ++-.+++|+ |.++.+|...+..++.++++|...|.|+.... ++. +++|+.|.++++|.. +++...+++|+.
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a 141 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA 141 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence 774 444577777 99999999999999999999999999999876 565 999999999999975 566777999999
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCc
Q 001336 892 RITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKL 971 (1097)
Q Consensus 892 ~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~ 971 (1097)
.|++++.-|++ .++||+.|.+|++|.-.+ .++...+|. +-|+.+++-+++.+|-++.||.|+.|++ +|
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHt---D~VRgL~vl~~~~flScsNDg~Ir~w~~-~g 209 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHT---DCVRGLAVLDDSHFLSCSNDGSIRLWDL-DG 209 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccch---hheeeeEEecCCCeEeecCCceEEEEec-cC
Confidence 99999999988 888999999999998754 567778877 6899999999999999999999999999 68
Q ss_pred ceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEE
Q 001336 972 ECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFA 1051 (1097)
Q Consensus 972 ~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~ 1051 (1097)
+++..+. +|..-|.++....+++.++++++|+++++|+.. ++...+..+. ..|+++++ -+ ..-++
T Consensus 210 e~l~~~~--ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPt-------tsiWsa~~--L~--NgDIv 274 (745)
T KOG0301|consen 210 EVLLEMH--GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPT-------TSIWSAKV--LL--NGDIV 274 (745)
T ss_pred ceeeeee--ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCc-------cceEEEEE--ee--CCCEE
Confidence 8888877 999999999999999999999999999999988 4444444222 45776633 23 34588
Q ss_pred EEecCCcEEEEecCC
Q 001336 1052 LGLTDGGVYIIEPLE 1066 (1097)
Q Consensus 1052 s~~~Dg~v~~W~~~~ 1066 (1097)
+|+.||.||||....
T Consensus 275 vg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 275 VGGSDGRVRVFTVDK 289 (745)
T ss_pred EeccCceEEEEEecc
Confidence 899999999998873
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=3e-24 Score=220.90 Aligned_cols=293 Identities=16% Similarity=0.210 Sum_probs=234.3
Q ss_pred eEEEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEc
Q 001336 311 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 390 (1097)
Q Consensus 311 ~~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 390 (1097)
+.+.+|.|.+-|.++++|...+++ .+|+. |-|+|||+....... +..+--......-|.++.++
T Consensus 411 rq~~tL~HGEvVcAvtIS~~trhV-yTgGk-gcVKVWdis~pg~k~--------------PvsqLdcl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTRHV-YTGGK-GCVKVWDISQPGNKS--------------PVSQLDCLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCccee-EecCC-CeEEEeeccCCCCCC--------------ccccccccCcccceeeeEec
Confidence 456788899999999999999865 67654 779999997542110 00000122345689999999
Q ss_pred cCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCC
Q 001336 391 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 470 (1097)
Q Consensus 391 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~ 470 (1097)
|||+.|++|+.-.++.|||+..... +....+..-.-...+++.+||.+ +.+++..||.|.|||+.+...++.|+||.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 9999999999999999999987642 22223444445678899999999 89999999999999999999999999999
Q ss_pred cCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC
Q 001336 471 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 550 (1097)
Q Consensus 471 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 550 (1097)
+.+.||.+ +.+|..|.+|+.|++||.||++++........ ...|.++..+|.+.+|+.+-.++ .+.+.... +
T Consensus 552 DGascIdi--s~dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMens----~vevlh~s-k 623 (705)
T KOG0639|consen 552 DGASCIDI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGMENS----NVEVLHTS-K 623 (705)
T ss_pred CCceeEEe--cCCCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecccC----cEEEEecC-C
Confidence 99999988 66778999999999999999998776655433 34799999999999999986533 45555543 2
Q ss_pred eeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001336 551 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK 630 (1097)
Q Consensus 551 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~ 630 (1097)
.....+..|.. -|.++.|.+.|+++++.+.|..+..|..--|..+..... ...|.++.++.|.++|++|+.|....
T Consensus 624 p~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 624 PEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred ccceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceE
Confidence 33344455554 789999999999999999999999999998887777643 56899999999999999999999888
Q ss_pred EEEc
Q 001336 631 ILAN 634 (1097)
Q Consensus 631 iw~~ 634 (1097)
+|.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8865
No 123
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=7.8e-23 Score=231.89 Aligned_cols=228 Identities=15% Similarity=0.232 Sum_probs=181.1
Q ss_pred EECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecC-CCcEEEEEEeCCCcEEEEECCCCc--------eeEEeecC
Q 001336 399 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP-NKQLSVVTCGEDRVIKVWDAVTGT--------KQYIFEGH 469 (1097)
Q Consensus 399 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d-~~~~~l~s~s~d~~i~iwd~~~~~--------~~~~~~~h 469 (1097)
|+.++.|++|+......+ ..+.+|.+.|.+++|+|+ +. +|+||+.|++|++||+.++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~v---~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPV---IKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCceE---EEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 667889999998765433 358899999999999997 56 89999999999999997642 34568899
Q ss_pred CcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCC
Q 001336 470 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 549 (1097)
Q Consensus 470 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 549 (1097)
...|.+++|++... .++++++.|++|++||++++.....+. +...|.+++|+|+|.+|++++.+ ..|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D----~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVG----KHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecC----CEEEEEECCC
Confidence 99999999976532 356799999999999999887666654 45689999999999999988754 4699999999
Q ss_pred CeeeEEecCCCCcc----eEEEEEcCCCCEEEEEeCCC----cEEEEECCC-CceEEEEecCCCCCCcceEEEcCCCCEE
Q 001336 550 GAVKRTYHGLGKRS----VGVVQFDTTKNRFLAAGDEF----MIKFWDMDN-VNLLASIDADGGLQASPCIRFNKEGILL 620 (1097)
Q Consensus 550 ~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l 620 (1097)
++.+..+.+|.+.. +....|++++.+|++++.|+ .|++||+++ ++++..+..+.....+......+++.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999987621 22234568999999988664 799999985 6777776655444333333445568899
Q ss_pred EEEECCCcEEEEEcCCC
Q 001336 621 AVSTNDNGIKILANADG 637 (1097)
Q Consensus 621 ~s~~~dg~i~iw~~~~~ 637 (1097)
++|+.|+.|++|++..+
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 99999999999999776
No 124
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.7e-20 Score=208.41 Aligned_cols=278 Identities=14% Similarity=0.209 Sum_probs=222.9
Q ss_pred ecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEE
Q 001336 317 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 396 (1097)
Q Consensus 317 ~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 396 (1097)
.|...-+.|+|.|+|. .+.+++.||.|++|+........ . .+.-+...|.+++. ++.+|
T Consensus 11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P-----------------~-ti~~~g~~v~~ia~--~s~~f 69 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEP-----------------E-TIDISGELVSSIAC--YSNHF 69 (933)
T ss_pred hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCC-----------------c-hhhccCceeEEEee--cccce
Confidence 4788899999999999 55788899999999987652111 0 12226677777776 55699
Q ss_pred EEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEE
Q 001336 397 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 476 (1097)
Q Consensus 397 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 476 (1097)
++|+.+++|.+|.+.+++.-. .+....-++.+++|+-+|+ +++.||.|-.|++-++.+......+++|.++|.++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred EEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 999999999999999876432 2444567899999999999 89999999999999999999999999999999999
Q ss_pred eecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCC--------CCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCC
Q 001336 477 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP--------GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 548 (1097)
Q Consensus 477 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 548 (1097)
.| ++++.+|++.+-||.|++||+.++.....+..- ...+..++|+|+|..++..+.+ +.|.+|+..
T Consensus 145 ~~--~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d----~~Vkvy~r~ 218 (933)
T KOG1274|consen 145 SY--DPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD----NTVKVYSRK 218 (933)
T ss_pred eE--cCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC----CeEEEEccC
Confidence 98 566689999999999999999987665544322 2246778999997777776654 469999999
Q ss_pred CCeeeEEecCCCCc-ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCC
Q 001336 549 EGAVKRTYHGLGKR-SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 627 (1097)
Q Consensus 549 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg 627 (1097)
.++....+...... .+..+.|+|+|.||++++.||.|.|||.++... |.....|.|++|.|+...+-.-...|
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeecc
Confidence 99988888665433 388899999999999999999999999998222 34466899999999888776655555
Q ss_pred cEEEE
Q 001336 628 GIKIL 632 (1097)
Q Consensus 628 ~i~iw 632 (1097)
...+|
T Consensus 293 ~~~~~ 297 (933)
T KOG1274|consen 293 TLGVS 297 (933)
T ss_pred ccccC
Confidence 55544
No 125
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=9.8e-24 Score=216.84 Aligned_cols=268 Identities=14% Similarity=0.212 Sum_probs=202.1
Q ss_pred eEEEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEc
Q 001336 311 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 390 (1097)
Q Consensus 311 ~~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 390 (1097)
+...++.|.+.|+.+.+-|....|+|+++..+.|.|||.....-.... .....+...+.||...=..++|+
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn 186 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWN 186 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeecccccccccc
Confidence 445667799999999999999999999999999999998754332210 00111222478999988899999
Q ss_pred cC-CCEEEEEECCCEEEEEEccCCee----eeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECC--CCcee
Q 001336 391 PD-GTLFGVAYSKHIVHLYTYHGGDE----LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV--TGTKQ 463 (1097)
Q Consensus 391 pd-~~~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~--~~~~~ 463 (1097)
+. .-+|++|+.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.|||++ +.++.
T Consensus 187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCc
Confidence 94 55899999999999999975433 5556678899999999999998777 79999999999999999 56667
Q ss_pred EEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCc-eeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceE
Q 001336 464 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL 542 (1097)
Q Consensus 464 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 542 (1097)
+...+|.+.|+|++|.+.. +.+|++|+.|++|.+||+++... ...+..|..
T Consensus 266 ~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d--------------------------- 317 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHED--------------------------- 317 (422)
T ss_pred ccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCc---------------------------
Confidence 7888999999999998765 47999999999999999986443 223334444
Q ss_pred EEEeCCCCeeeEEecCCCCcceEEEEEcCCC-CEEEEEeCCCcEEEEECCC------------CceEEEEecCCCCCCcc
Q 001336 543 VEWNESEGAVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDN------------VNLLASIDADGGLQASP 609 (1097)
Q Consensus 543 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~------------~~~~~~~~~~~~~~~v~ 609 (1097)
.|..+.|+|.. ..|++++.|+.+.+||+.. +.+--.+.+.||...|+
T Consensus 318 --------------------ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~ 377 (422)
T KOG0264|consen 318 --------------------EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVS 377 (422)
T ss_pred --------------------ceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccc
Confidence 45555555543 3444445566666666542 11222234446788999
Q ss_pred eEEEcCCC-CEEEEEECCCcEEEEEcCC
Q 001336 610 CIRFNKEG-ILLAVSTNDNGIKILANAD 636 (1097)
Q Consensus 610 ~v~~s~~~-~~l~s~~~dg~i~iw~~~~ 636 (1097)
.+.|+|+. -.|+++++|+.+.||.+..
T Consensus 378 DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 378 DFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccCCCCCCeEEEEecCCceEEEeeccc
Confidence 99999965 5788899999999998764
No 126
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.5e-23 Score=199.61 Aligned_cols=297 Identities=13% Similarity=0.171 Sum_probs=223.8
Q ss_pred CCceEEEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEE
Q 001336 308 LPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 387 (1097)
Q Consensus 308 ~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 387 (1097)
.|.++..++.+.. -.|+.|++.|.+ ||+|..||.|.|||+.+...-. ++.+|..+|+++
T Consensus 13 ~PEel~~tld~~~-a~~~~Fs~~G~~-lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~sl 71 (405)
T KOG1273|consen 13 YPEELTHTLDNPL-AECCQFSRWGDY-LAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITSL 71 (405)
T ss_pred ChHhhceeccCCc-cceEEeccCcce-eeeeccCCcEEEEEccccchhh-------------------hhhccccceeEE
Confidence 3566777888766 899999999985 6999999999999998865322 488999999999
Q ss_pred EEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEee
Q 001336 388 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE 467 (1097)
Q Consensus 388 ~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 467 (1097)
+||+||+.|++++.|..|.+||+..|.+++++. ...+|+.+.|+|...+ .++..-.+..-.+-++..++...--.
T Consensus 72 ~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir----f~spv~~~q~hp~k~n-~~va~~~~~sp~vi~~s~~~h~~Lp~ 146 (405)
T KOG1273|consen 72 CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR----FDSPVWGAQWHPRKRN-KCVATIMEESPVVIDFSDPKHSVLPK 146 (405)
T ss_pred EecCCCCEeeeecCCceeEEEeccCCCceeEEE----ccCccceeeeccccCC-eEEEEEecCCcEEEEecCCceeeccC
Confidence 999999999999999999999999998776542 5688999999997776 34444444445566655432211111
Q ss_pred cCCcC--eEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCC-CceEEEEEccCCCEEEEeeeCCCCCceEEE
Q 001336 468 GHESP--VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSADGARLFSCGTNKEGESYLVE 544 (1097)
Q Consensus 468 ~h~~~--v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 544 (1097)
...+. +..-+-.++..|+++++|...|.+.++|.++.++...+.... ..|..+.++..|+.+++.+. +..|+.
T Consensus 147 d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvIR~ 222 (405)
T KOG1273|consen 147 DDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVIRT 222 (405)
T ss_pred CCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceEEE
Confidence 11111 111111246778999999999999999999998888777666 68999999999999999875 457999
Q ss_pred EeCCCC-------e--eeEEecCC-CCcceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCcceEEE
Q 001336 545 WNESEG-------A--VKRTYHGL-GKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRF 613 (1097)
Q Consensus 545 wd~~~~-------~--~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 613 (1097)
|+++.- + +.+++..- ....-.+++|+.+|.++++++ .-..++||....|.+++.+.+..+ .....+.|
T Consensus 223 ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~DV~w 301 (405)
T KOG1273|consen 223 YEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLDVNW 301 (405)
T ss_pred EehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheeeccc
Confidence 987621 1 11222110 112345789999999999888 567899999999999999976532 35678999
Q ss_pred cCCCCEEEEEECCCcEEEEEcCC
Q 001336 614 NKEGILLAVSTNDNGIKILANAD 636 (1097)
Q Consensus 614 s~~~~~l~s~~~dg~i~iw~~~~ 636 (1097)
+|-...+++- ..|.++||....
T Consensus 302 hp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 302 HPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred ccceeeeeec-cCCceEEEEeec
Confidence 9988888877 778999998654
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-22 Score=224.32 Aligned_cols=285 Identities=16% Similarity=0.179 Sum_probs=220.2
Q ss_pred cCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEcc
Q 001336 737 LTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK 816 (1097)
Q Consensus 737 ~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 816 (1097)
.|....+.++|.|+|.+|++++.||.|++|+.... .+..+.+. . +...|.+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd------------------~e~P~ti~--~----~g~~v~~ia~-- 64 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSD------------------EEEPETID--I----SGELVSSIAC-- 64 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCc------------------ccCCchhh--c----cCceeEEEee--
Confidence 47788999999999999999999999999975421 11111111 1 4566666665
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEE
Q 001336 817 NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITG 895 (1097)
Q Consensus 817 dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 895 (1097)
++.++++++ +++|.+|.+.+++.-..+....-++++++|+. +|+++|.|+.|-.|++-++.+......+++|.++|.+
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence 455888888 89999999988876655555667899999999 9999999999999999999999989999999999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEE-EEEeCCeEEEEeCCCccee
Q 001336 896 LAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHL-LAVHETQIAIYEAPKLECL 974 (1097)
Q Consensus 896 l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l-~~~~d~~v~vwd~~~~~~~ 974 (1097)
+.|+|++.+||+.+-||.|++|+++.+.......-..+.........+..++|+|+|..+ +.+.|+.|.+|+..+.+..
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence 999999999999999999999999987755432222222111112557889999995555 4589999999999999999
Q ss_pred eeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEe
Q 001336 975 KQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGL 1054 (1097)
Q Consensus 975 ~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~ 1054 (1097)
..+....|...+..++|||+|+|||+++.||.|.|||+++... .... ..|. +++|.|+ ...+-.-.
T Consensus 224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~~~~----------~~Vc--~~aw~p~-~n~it~~~ 289 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-HEFK----------RAVC--CEAWKPN-ANAITLIT 289 (933)
T ss_pred eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-cccc----------ceeE--EEecCCC-CCeeEEEe
Confidence 8888767777799999999999999999999999999998222 1111 2344 4588884 45444444
Q ss_pred cCCcEEEE
Q 001336 1055 TDGGVYII 1062 (1097)
Q Consensus 1055 ~Dg~v~~W 1062 (1097)
.-|+..+|
T Consensus 290 ~~g~~~~~ 297 (933)
T KOG1274|consen 290 ALGTLGVS 297 (933)
T ss_pred eccccccC
Confidence 44444444
No 128
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.4e-22 Score=195.19 Aligned_cols=243 Identities=16% Similarity=0.127 Sum_probs=189.7
Q ss_pred CCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001336 378 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 457 (1097)
Q Consensus 378 ~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~ 457 (1097)
......|..+.|+|.+..|++++.||++++||+...+... .-.|..++.+++|.++.+ +++|+-||.|+.+|+
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDL 82 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEe
Confidence 4567899999999999999999999999999998875332 335999999999998665 999999999999999
Q ss_pred CCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCC
Q 001336 458 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE 537 (1097)
Q Consensus 458 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 537 (1097)
.++.... +..|..+|.|+.+.+.. ..+++|+.|++|++||.+.......+.. ...|.++.. .|+.|++++.
T Consensus 83 n~~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~--- 153 (323)
T KOG1036|consen 83 NTGNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTS--- 153 (323)
T ss_pred cCCccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeec---
Confidence 8887544 55699999999986544 5799999999999999987444333333 336776665 5677777664
Q ss_pred CCceEEEEeCCCCeeeE-EecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceEEEEecCCC-------C
Q 001336 538 GESYLVEWNESEGAVKR-TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV----NLLASIDADGG-------L 605 (1097)
Q Consensus 538 ~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~ 605 (1097)
+..+.+||+++..... .....-.-.+.++++-|++.-+++++-||.|.+=.++.. +....++.|.. .
T Consensus 154 -~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~ 232 (323)
T KOG1036|consen 154 -DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEII 232 (323)
T ss_pred -CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEE
Confidence 4479999999865433 222222346889999999999999999999988766655 33444554422 2
Q ss_pred CCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 606 QASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 606 ~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
-+|++++|+|-...||+|+.||.|.+||..+.
T Consensus 233 yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 233 YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred EEeceeEeccccceEEecCCCceEEEccCcch
Confidence 36899999999899999999999999998765
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=5.6e-23 Score=211.64 Aligned_cols=282 Identities=11% Similarity=0.138 Sum_probs=226.0
Q ss_pred CccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccC
Q 001336 738 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 817 (1097)
Q Consensus 738 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 817 (1097)
|..-|.++++|...+.+.+|+. |.|+|||+... .....+. .+.+......|+++.+.||
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~p-------------------g~k~Pvs-qLdcl~rdnyiRSckL~pd 476 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQP-------------------GNKSPVS-QLDCLNRDNYIRSCKLLPD 476 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCC-------------------CCCCccc-cccccCcccceeeeEecCC
Confidence 7788899999999998888875 68999998742 1111111 1222235778999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCceeE--EeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeE
Q 001336 818 DSYVMSAS-GGKISLFNMMTFKTMT--TFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRIT 894 (1097)
Q Consensus 818 g~~la~~s-dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~ 894 (1097)
|+.|++|+ -.++.|||+....... .+......+.+++.+| |.++.++++.||.|.|||+.+...++.|+||.+.+.
T Consensus 477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence 99999999 6889999997654433 3333335678899999 999999999999999999999999999999999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEEEEeCCCcce
Q 001336 895 GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLEC 973 (1097)
Q Consensus 895 ~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~vwd~~~~~~ 973 (1097)
+|.+++||..|.|||-|.+|+-||+..++... ..... +.|.++..+|.+.+|+++ ..+.+.|......+.
T Consensus 556 cIdis~dGtklWTGGlDntvRcWDlregrqlq-----qhdF~----SQIfSLg~cP~~dWlavGMens~vevlh~skp~k 626 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ-----QHDFS----SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK 626 (705)
T ss_pred eEEecCCCceeecCCCccceeehhhhhhhhhh-----hhhhh----hhheecccCCCccceeeecccCcEEEEecCCccc
Confidence 99999999999999999999999999865322 11111 568999999999999998 567888877764433
Q ss_pred eeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEE
Q 001336 974 LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALG 1053 (1097)
Q Consensus 974 ~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~ 1053 (1097)
+..+-|..-|.++.|++.|+++++.+.|+.+-.|...-|..+.+.. ..+.|.+..|++ |..+++||
T Consensus 627 ---yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--------E~SsVlsCDIS~---ddkyIVTG 692 (705)
T KOG0639|consen 627 ---YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--------ESSSVLSCDISF---DDKYIVTG 692 (705)
T ss_pred ---eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc--------ccCcceeeeecc---CceEEEec
Confidence 2233689999999999999999999999999999999888775554 346677776663 67899999
Q ss_pred ecCCcEEEEec
Q 001336 1054 LTDGGVYIIEP 1064 (1097)
Q Consensus 1054 ~~Dg~v~~W~~ 1064 (1097)
+.|....||.+
T Consensus 693 SGdkkATVYeV 703 (705)
T KOG0639|consen 693 SGDKKATVYEV 703 (705)
T ss_pred CCCcceEEEEE
Confidence 99988777765
No 130
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=208.77 Aligned_cols=225 Identities=14% Similarity=0.151 Sum_probs=192.0
Q ss_pred CCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECC-
Q 001336 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV- 458 (1097)
Q Consensus 380 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~- 458 (1097)
-.+.|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||. +|+|||.||.|.+|++.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTD 154 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEe
Confidence 35689999999999999999999999999999998776 4789999999999999999 89999999999999863
Q ss_pred --------CCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEE
Q 001336 459 --------TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF 530 (1097)
Q Consensus 459 --------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 530 (1097)
+-++++.|..|.-+|+++...+.+...+|+|+|.|.++++||+..+.....+.. ...+.+++.+|-++.+.
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~y 233 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVY 233 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEE
Confidence 346788999999999999987765557999999999999999998876666544 45889999999999999
Q ss_pred EeeeCCCCCceEEEEeCCC----------------CeeeEEecCCCC-cceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001336 531 SCGTNKEGESYLVEWNESE----------------GAVKRTYHGLGK-RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 593 (1097)
Q Consensus 531 ~~~~~~~~~~~i~~wd~~~----------------~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 593 (1097)
+|+.++ .|.+.++.. +..++.+.||.+ ..|+|++++-||..|++|+.||.|+|||..+.
T Consensus 234 iGt~~G----~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 234 IGTEEG----KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred ecCCcc----eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 987643 566655432 235667777765 58999999999999999999999999999999
Q ss_pred ceEEEEecCCCCCCcceEEEcCC
Q 001336 594 NLLASIDADGGLQASPCIRFNKE 616 (1097)
Q Consensus 594 ~~~~~~~~~~~~~~v~~v~~s~~ 616 (1097)
++++++... .++|+.+.+.|-
T Consensus 310 Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 310 QCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred HHHHHHhhh--ccccceeEeecc
Confidence 999988743 668999998764
No 131
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=5.6e-22 Score=191.19 Aligned_cols=302 Identities=15% Similarity=0.246 Sum_probs=227.3
Q ss_pred ecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc-CCCE
Q 001336 317 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTL 395 (1097)
Q Consensus 317 ~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~ 395 (1097)
.|.+.|+++...+...+++.+|+.||.|.|||++....-....+ +- ...|....+ -..+|.-.|..+.|-| |.-.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~-k~~c~v~~~--h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IA-KHKCIVAKQ--HENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-ee-heeeecccc--CCccceeeeeeeEEeeecCce
Confidence 38899999999997655678999999999999986541110000 00 001111111 2568999999999999 7778
Q ss_pred EEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCC-cEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeE
Q 001336 396 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK-QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 474 (1097)
Q Consensus 396 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~ 474 (1097)
+.+++-|.+++|||..+-+.... +. -.+.|.+-+|||-.. ..++++|..|-.|++.|+.+|.+.+++.||.+.|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~---F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVD---FK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred eecccccceEEEeecccceeeEE---ee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 89999999999999998765432 22 456788888988543 33788888889999999999999999999999999
Q ss_pred EEeecccCCccEEEEEcCCCeEEEEEcCCC-Cceeee--------------cCCCCceEEEEEccCCCEEEEeeeCCCCC
Q 001336 475 SICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDY--------------DAPGHSSTMMAYSADGARLFSCGTNKEGE 539 (1097)
Q Consensus 475 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~--------------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 539 (1097)
++.|+|..+ -.|++|+.||.|++||++.. .+...+ ..|.+.+.+++|+.++.++++++.+
T Consensus 193 aV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd---- 267 (397)
T KOG4283|consen 193 AVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD---- 267 (397)
T ss_pred EEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCc----
Confidence 999988765 67899999999999999754 222222 2344578999999999999999874
Q ss_pred ceEEEEeCCCCeeeEEecC---CCC--cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEc
Q 001336 540 SYLVEWNESEGAVKRTYHG---LGK--RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN 614 (1097)
Q Consensus 540 ~~i~~wd~~~~~~~~~~~~---~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 614 (1097)
..+++|+..+|+....-.+ +.+ ..-..+. +.+...++.--.++.+.++++-.|..+..+..| ...|.|.++-
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h--~k~i~c~~~~ 344 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH--LKRINCAAYR 344 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecc--cceeeEEeec
Confidence 3699999998753221111 111 0111122 334445555557799999999999999999977 6689999999
Q ss_pred CCCCEEEEEECCCcEEEEEc
Q 001336 615 KEGILLAVSTNDNGIKILAN 634 (1097)
Q Consensus 615 ~~~~~l~s~~~dg~i~iw~~ 634 (1097)
|+-+...+|..|+.|..|-.
T Consensus 345 ~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 345 PDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred CchhhhhccccCCccccccc
Confidence 99999999999999999975
No 132
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.1e-22 Score=191.27 Aligned_cols=251 Identities=18% Similarity=0.246 Sum_probs=200.3
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc--CCCE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTL 395 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~~ 395 (1097)
|.+.|..+...--|++| |+++.|++|+|+.++.+.... ....+.||.++|+.++|-. -|.+
T Consensus 10 H~D~IHda~lDyygkrl-ATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKRL-ATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGTI 72 (299)
T ss_pred hhhhhhHhhhhhhccee-eeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCcE
Confidence 88888888888889864 999999999999998765311 1113899999999999976 8999
Q ss_pred EEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC---ceeEEeecCCcC
Q 001336 396 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG---TKQYIFEGHESP 472 (1097)
Q Consensus 396 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~h~~~ 472 (1097)
||+++.||.|.||.-.+|+ ..+......|...|++++|.|.+-.++|++++.||.|.|.+.++. ........|.-.
T Consensus 73 LAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred eeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 9999999999999999884 455556778999999999999988779999999999999988754 223455789999
Q ss_pred eEEEeecccCC-c-----------cEEEEEcCCCeEEEEEcCCCCce--eeecCCCCceEEEEEccCC----CEEEEeee
Q 001336 473 VYSICPHHKEN-I-----------QFIFSTATDGKIKAWLYDNLGSR--VDYDAPGHSSTMMAYSADG----ARLFSCGT 534 (1097)
Q Consensus 473 v~~~~~~~~~~-~-----------~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~----~~l~~~~~ 534 (1097)
|++++|.|..- | ..|++|+.|+.|+||+.+...-. ..+..|...|+.++|.|.- .++++++.
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 99999976521 1 56999999999999999875332 2367788899999999965 46888876
Q ss_pred CCCCCceEEEEeCCCC--eeeE-EecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001336 535 NKEGESYLVEWNESEG--AVKR-TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 591 (1097)
Q Consensus 535 ~~~~~~~i~~wd~~~~--~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 591 (1097)
|+ .+.+|..... .-.. .++... ..+..+.|+..|+.|+.++.|+.|.+|.-+
T Consensus 232 Dg----~viIwt~~~e~e~wk~tll~~f~-~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 232 DG----TVIIWTKDEEYEPWKKTLLEEFP-DVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CC----cEEEEEecCccCcccccccccCC-cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 54 6899976522 1111 222222 379999999999999999999999999754
No 133
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7e-22 Score=202.50 Aligned_cols=289 Identities=13% Similarity=0.215 Sum_probs=233.3
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCC-EE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT-LF 396 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~-~l 396 (1097)
..+.|++|.|+|.-+ +|.+++.||+++||.+.......... +.--..+|.+.+|.|+|. .+
T Consensus 212 s~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i 273 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVI 273 (514)
T ss_pred CcCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEE
Confidence 357899999999988 66789999999999997543322111 122356999999999999 89
Q ss_pred EEEECCCEEEEEEccCCeeeeeeeeeeccc-CcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEE
Q 001336 397 GVAYSKHIVHLYTYHGGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 475 (1097)
Q Consensus 397 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 475 (1097)
++++.....+.||+.+.+. .+...+.|+. ..+.....|++++ +|+..+..|.|.+-...+++.+.+++ -.+.|..
T Consensus 274 ~~s~rrky~ysyDle~ak~-~k~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~ 349 (514)
T KOG2055|consen 274 FTSGRRKYLYSYDLETAKV-TKLKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSD 349 (514)
T ss_pred EecccceEEEEeecccccc-ccccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEee
Confidence 9999999999999998874 3444455665 3577888999999 89999999999999999999999887 5678999
Q ss_pred EeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCC-ceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCC-----
Q 001336 476 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH-SSTMMAYSADGARLFSCGTNKEGESYLVEWNESE----- 549 (1097)
Q Consensus 476 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----- 549 (1097)
++|+ .++..|+.++.+|.|.+||++...+...+...+. .-++++.+++|.++++|+. .+.|.|||..+
T Consensus 350 ~~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~ 423 (514)
T KOG2055|consen 350 FTFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFAST 423 (514)
T ss_pred EEEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccC
Confidence 9984 6678999999999999999999888877766554 4578888999999999975 44799999653
Q ss_pred -CeeeEEecCCCCcceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEecC-CCCCCcceEEEcCCCCEEEEEEC
Q 001336 550 -GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDAD-GGLQASPCIRFNKEGILLAVSTN 625 (1097)
Q Consensus 550 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~s~~~ 625 (1097)
.+++..+..-.. .|+++.|+++...|+.+| .+..+++-++.+......+... .....|+|++|+|.+.+||.|..
T Consensus 424 ~PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 424 NPKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred CCCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence 355666555554 799999999999999888 6778999888876655554322 23456899999999999999999
Q ss_pred CCcEEEEEcC
Q 001336 626 DNGIKILANA 635 (1097)
Q Consensus 626 dg~i~iw~~~ 635 (1097)
+|.+.+|.+.
T Consensus 503 ~grv~l~kL~ 512 (514)
T KOG2055|consen 503 AGRVHLFKLH 512 (514)
T ss_pred CCceeeEeec
Confidence 9999999864
No 134
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1e-21 Score=202.04 Aligned_cols=301 Identities=16% Similarity=0.212 Sum_probs=225.2
Q ss_pred EEeCCC-cEEEEECCCCceeEEeecC-CcCeEEEeecccCCccEEEEEc-CCCeEEEEEcCCCCceeeecCCCCceEEEE
Q 001336 445 TCGEDR-VIKVWDAVTGTKQYIFEGH-ESPVYSICPHHKENIQFIFSTA-TDGKIKAWLYDNLGSRVDYDAPGHSSTMMA 521 (1097)
Q Consensus 445 s~s~d~-~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 521 (1097)
+++.|. ++.+||+++|..+.++++- ...-.++..- . +.+++++. .-..|.+|.+...........-.+++.+++
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~--~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~ 88 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-N--NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALA 88 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-c--hhheeeecccCccccccccCchhhhhhhcccccceeeee
Confidence 344444 5999999999999988875 2222222211 1 14566554 445789998876555554444566899999
Q ss_pred EccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECC---------C
Q 001336 522 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD---------N 592 (1097)
Q Consensus 522 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---------~ 592 (1097)
-+|+|.+|+.++..+ .|++|.+.+|.++..+..|-+ .|+++.|+.||.+|++||.||.|.+|.+. +
T Consensus 89 s~n~G~~l~ag~i~g----~lYlWelssG~LL~v~~aHYQ-~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~ 163 (476)
T KOG0646|consen 89 SSNLGYFLLAGTISG----NLYLWELSSGILLNVLSAHYQ-SITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHS 163 (476)
T ss_pred cCCCceEEEeecccC----cEEEEEeccccHHHHHHhhcc-ceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCC
Confidence 999999999986543 599999999999999999988 99999999999999999999999999863 2
Q ss_pred CceEEEEecCCCCCCcceEEEcCC--CCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCccccccc
Q 001336 593 VNLLASIDADGGLQASPCIRFNKE--GILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGS 670 (1097)
Q Consensus 593 ~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1097)
-+++..+..| .-+|+.+...+. ..++++++.|.++++||+..+ .++..+.
T Consensus 164 ~~p~~~f~~H--tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlti~------------------------- 215 (476)
T KOG0646|consen 164 VKPLHIFSDH--TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLTIT------------------------- 215 (476)
T ss_pred ccceeeeccC--cceeEEEEecCCCccceEEEecCCceEEEEEeccc-eeeEEEe-------------------------
Confidence 3456666654 778988888764 478999999999999999888 3333221
Q ss_pred CccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccC
Q 001336 671 ANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS 750 (1097)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 750 (1097)
....+.+++..|-
T Consensus 216 -------------------------------------------------------------------fp~si~av~lDpa 228 (476)
T KOG0646|consen 216 -------------------------------------------------------------------FPSSIKAVALDPA 228 (476)
T ss_pred -------------------------------------------------------------------cCCcceeEEEccc
Confidence 2346789999999
Q ss_pred CceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCC--CeeEEEEccCCCEEEEEe-CC
Q 001336 751 GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPED--AVPCFALSKNDSYVMSAS-GG 827 (1097)
Q Consensus 751 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~--~v~~l~~s~dg~~la~~s-dg 827 (1097)
++.+.+|+.+|.|.+.++..-+-... ....+.++...-+.. .+.| |.+ .|+|++++-||.+|++|+ ||
T Consensus 229 e~~~yiGt~~G~I~~~~~~~~~~~~~-----~v~~k~~~~~~t~~~--~~~G--h~~~~~ITcLais~DgtlLlSGd~dg 299 (476)
T KOG0646|consen 229 ERVVYIGTEEGKIFQNLLFKLSGQSA-----GVNQKGRHEENTQIN--VLVG--HENESAITCLAISTDGTLLLSGDEDG 299 (476)
T ss_pred ccEEEecCCcceEEeeehhcCCcccc-----cccccccccccceee--eecc--ccCCcceeEEEEecCccEEEeeCCCC
Confidence 99999999999999877654321000 000112222222111 2344 666 999999999999999999 99
Q ss_pred eEEEEEcCCCceeEEeCCCCCCeEEEEEeC
Q 001336 828 KISLFNMMTFKTMTTFMPPPPAATFLAFHP 857 (1097)
Q Consensus 828 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp 857 (1097)
+|+|||+.+.++++++....++|+.+.+.|
T Consensus 300 ~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 300 KVCVWDIYSKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred CEEEEecchHHHHHHHhhhccccceeEeec
Confidence 999999999999999987778999999865
No 135
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.4e-21 Score=198.62 Aligned_cols=249 Identities=15% Similarity=0.214 Sum_probs=196.2
Q ss_pred CccceEEEEEccCCc-eeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEcc
Q 001336 738 TAMRVSRLIYTNSGL-AILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK 816 (1097)
Q Consensus 738 ~~~~i~~l~~spdg~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 816 (1097)
...+|.+..|.|+|. .+++++....+..||+.+.+. .............+....+||
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~----------------------~k~~~~~g~e~~~~e~FeVSh 313 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV----------------------TKLKPPYGVEEKSMERFEVSH 313 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeecccccc----------------------ccccCCCCcccchhheeEecC
Confidence 346788999999999 888888888999988764332 111111101244677889999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEeccccc-CeE
Q 001336 817 NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQK-RIT 894 (1097)
Q Consensus 817 dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~-~V~ 894 (1097)
++++|+..+ .|.|.|....+++.+.+++ -.+.|..++|+. +++.|.+.+.+|.|++||+....+++++....+ .-+
T Consensus 314 d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gt 391 (514)
T KOG2055|consen 314 DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGT 391 (514)
T ss_pred CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCcccee
Confidence 999999998 8999999999999999987 678899999998 888888888999999999999998888764322 236
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCCCcccc-eeeEeecCCCCCCccCCeEEEEcCCCcEEEEE---eCCeEEEEeCCC
Q 001336 895 GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQA-SKFLTIPNGRTASALADTRVQFHLDQTHLLAV---HETQIAIYEAPK 970 (1097)
Q Consensus 895 ~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~---~d~~v~vwd~~~ 970 (1097)
+++.|++|.+||+|+..|.|.|||.++--... .+.+.....-. ..|+.++|++|+..||.+ ....+++-.+.+
T Consensus 392 s~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 392 SLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred eeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 78889999999999999999999976522111 11121111111 468999999999999883 568899999999
Q ss_pred cceeeeeeccC-CCCCEEEEEEecCCCEEEEEecCCeEEEEeCC
Q 001336 971 LECLKQFVPRE-ASGPITHATYSCDSQSIYVAFEEGSVGVLTAS 1013 (1097)
Q Consensus 971 ~~~~~~~~~~~-h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~ 1013 (1097)
......|...+ --+.|+|++|||.|.+||.|..+|.|.+|.+.
T Consensus 469 ~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 469 CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 88888887543 25689999999999999999999999999874
No 136
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=2.3e-21 Score=198.68 Aligned_cols=294 Identities=18% Similarity=0.220 Sum_probs=223.8
Q ss_pred cCCCeeEEEEccCCC-eEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc-CCCE
Q 001336 318 QGSAVKSMDFHPVQQ-ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTL 395 (1097)
Q Consensus 318 h~~~V~~v~fspdg~-~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~ 395 (1097)
+.+.|++++|+|... .|+|+|...|.|-+||+.+.+...... .++..|..+|.++.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEecCCChhh
Confidence 789999999999877 899999999999999997444322111 13788999999999999 6678
Q ss_pred EEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCce-eEEeecCCcCeE
Q 001336 396 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QYIFEGHESPVY 474 (1097)
Q Consensus 396 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~ 474 (1097)
+.+.+.||+|+.-|++++. ......+..-...+..+.|+.+.. .++.+..=|...+||.+++.. ...+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i-~e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNI-SEEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchh-hHHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 9999999999999998764 222223433455678889998888 678888878999999997655 556777888999
Q ss_pred EEeecccCCccEEEEEcCCCeEEEEEcCCCCcee----eecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCC--
Q 001336 475 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV----DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES-- 548 (1097)
Q Consensus 475 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-- 548 (1097)
+++++|... .+++|++.|++.+|||++...... ....|...|.+..|||.+-.|++.+.| ..|++||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D----~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQD----NEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccC----CceEEeecccc
Confidence 999988765 799999999999999998655433 344567799999999998888888764 469999983
Q ss_pred --CCeeeEEecCCCC--c--ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcc-eEEEcCCCCEEE
Q 001336 549 --EGAVKRTYHGLGK--R--SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASP-CIRFNKEGILLA 621 (1097)
Q Consensus 549 --~~~~~~~~~~~~~--~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~ 621 (1097)
.-.....+..... . ......|.|+.+++++|-.-..|-|+|-..++.+..+.... ...|. -..|+|-+..++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~-~~tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE-SSTIPSVNEFHPMRDTLA 480 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc-ccccccceeeccccccee
Confidence 2233333322111 1 22346899999999999999999999999999888765432 22343 457999877454
Q ss_pred E-EECCCcEEEEEcC
Q 001336 622 V-STNDNGIKILANA 635 (1097)
Q Consensus 622 s-~~~dg~i~iw~~~ 635 (1097)
+ ++..|.|+||.-+
T Consensus 481 aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 481 AGGNSSGKIYVFTNK 495 (498)
T ss_pred ccCCccceEEEEecC
Confidence 4 5567888888644
No 137
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=1.7e-20 Score=199.60 Aligned_cols=274 Identities=12% Similarity=0.148 Sum_probs=204.4
Q ss_pred CCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEE
Q 001336 320 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 399 (1097)
Q Consensus 320 ~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 399 (1097)
..|..++|-|||..|++++ +..+.|||.+.|.++.. +++|.+.|.|++|+.||+.+|+|
T Consensus 13 hci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG 71 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASG 71 (1081)
T ss_pred cchheeEECCCCceEEEec--CCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccC
Confidence 3789999999999876654 35699999999988764 89999999999999999999999
Q ss_pred ECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeec
Q 001336 400 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPH 479 (1097)
Q Consensus 400 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 479 (1097)
+.|..|.+|+-.-...++ -.|.+.|.|+.|+|-.. .|+||+-. ..-+|........+ .+ ...+|.+++|
T Consensus 72 ~aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~K-~k-ss~R~~~CsW- 140 (1081)
T KOG1538|consen 72 SADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVSK-HK-SSSRIICCSW- 140 (1081)
T ss_pred CCceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHHh-hh-hheeEEEeee-
Confidence 999999999876543332 25999999999999988 68888764 46788865443321 11 2345666666
Q ss_pred ccCCccEEEEEcCCCeEEEEEcCCCCceeeecC---CCCceEEEEEccCCC-----EEEEeeeCCCCCceEEEEeCCCCe
Q 001336 480 HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA---PGHSSTMMAYSADGA-----RLFSCGTNKEGESYLVEWNESEGA 551 (1097)
Q Consensus 480 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~-----~l~~~~~~~~~~~~i~~wd~~~~~ 551 (1097)
..||++++.|-.||+|.+=+-. ++....+.. ...+|.+++|+|... .+++.-. ..++..+.+. |+
T Consensus 141 -tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~Ls-G~ 213 (1081)
T KOG1538|consen 141 -TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQLS-GK 213 (1081)
T ss_pred -cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEec-ce
Confidence 7888999999999999887543 444444444 345899999998543 3333322 2235555443 33
Q ss_pred eeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEE
Q 001336 552 VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI 631 (1097)
Q Consensus 552 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~i 631 (1097)
.+.+-..-.- ...|+.+.++|.+++.||.|+.+++|.. .|-.+.++... ...|..++..|+++.++.|..||+|..
T Consensus 214 ~Igk~r~L~F-dP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~--D~WIWtV~~~PNsQ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 214 QIGKDRALNF-DPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQ--DSWIWTVQAKPNSQYVVVGCQDGTIAC 289 (1081)
T ss_pred eecccccCCC-CchhheeccCCcEEEEccCCCceEEEee-cCeEEeecccc--ceeEEEEEEccCCceEEEEEccCeeeh
Confidence 3332222221 4567889999999999999999999975 46666666543 568999999999999999999999999
Q ss_pred EEcCC
Q 001336 632 LANAD 636 (1097)
Q Consensus 632 w~~~~ 636 (1097)
|++..
T Consensus 290 yNl~f 294 (1081)
T KOG1538|consen 290 YNLIF 294 (1081)
T ss_pred hhhHH
Confidence 98743
No 138
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=3.8e-21 Score=185.49 Aligned_cols=246 Identities=16% Similarity=0.243 Sum_probs=186.9
Q ss_pred CcCccceEEEEEccCC-ceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEE
Q 001336 736 NLTAMRVSRLIYTNSG-LAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFAL 814 (1097)
Q Consensus 736 ~~~~~~i~~l~~spdg-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~ 814 (1097)
.+|...|..+.|-|-. -.+.+++-|.+++|||.++-. +... + .-++.|+.-++
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ---------------------~a~~--F---~me~~VYsham 151 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ---------------------EAVD--F---KMEGKVYSHAM 151 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccce---------------------eeEE--e---ecCceeehhhc
Confidence 3588889999988854 456666779999999876321 0111 1 14566777777
Q ss_pred ccCC---CEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccc-eEEEEe---
Q 001336 815 SKND---SYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD-EVKTKL--- 886 (1097)
Q Consensus 815 s~dg---~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~-~~~~~l--- 886 (1097)
||-. -++|+|. +-+|++.|+.+|.+.+++.+|.+.|.++.|+|...-.||+|+.||.|++||++.. -+...+
T Consensus 152 Sp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~h 231 (397)
T KOG4283|consen 152 SPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQH 231 (397)
T ss_pred ChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecc
Confidence 7743 3677777 6789999999999999999999999999999976778899999999999999753 233333
Q ss_pred -----------cccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEE
Q 001336 887 -----------KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHL 955 (1097)
Q Consensus 887 -----------~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 955 (1097)
..|.+.|.+++|+.|+.++++++.|..+++|+...|+......-.+...... ..-..+. +.+...+
T Consensus 232 n~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~--~~~~~~~-~~~s~vf 308 (397)
T KOG4283|consen 232 NTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT--SFAVHIQ-SMDSDVF 308 (397)
T ss_pred cCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc--cceEEEe-ecccceE
Confidence 3577889999999999999999999999999999887543333222222221 1111233 3333333
Q ss_pred E-EEeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeC
Q 001336 956 L-AVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTA 1012 (1097)
Q Consensus 956 ~-~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~ 1012 (1097)
+ .-.++.+.++.+-.++.+..+. .|...|.+.++-||=+.+.++..|+.|.-|-.
T Consensus 309 v~~p~~~~lall~~~sgs~ir~l~--~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 309 VLFPNDGSLALLNLLEGSFVRRLS--THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEEecCCeEEEEEccCceEEEeee--cccceeeEEeecCchhhhhccccCCccccccc
Confidence 3 3467999999999999999998 78899999999999999999999999999975
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=1.1e-19 Score=200.17 Aligned_cols=292 Identities=13% Similarity=0.146 Sum_probs=213.8
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEE-EEEcCCCeEEEEEcCCCCceeeecCCCCceEEE
Q 001336 442 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFI-FSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM 520 (1097)
Q Consensus 442 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 520 (1097)
++++++.|+.|++||+.+++.+..+..+.. +.+++|+ +++..+ ++++.++.|++||..+.+....+..+ ..+..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~--~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~ 78 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLS--KDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-PDPELF 78 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEEC--CCCCEEEEEECCCCeEEEEECCCCcEEEeccCC-CCccEE
Confidence 688999999999999999999998886654 5678884 555655 67788999999999887665544433 345678
Q ss_pred EEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceEEEE
Q 001336 521 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF-MIKFWDMDNVNLLASI 599 (1097)
Q Consensus 521 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~ 599 (1097)
+|+|+++.+++++. .+..+.+||+.+++.+..+.... .+..++|+|++..+++++.++ .+.+||..+++.+..+
T Consensus 79 ~~~~~g~~l~~~~~---~~~~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 79 ALHPNGKILYIANE---DDNLVTVIDIETRKVLAEIPVGV--EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred EECCCCCEEEEEcC---CCCeEEEEECCCCeEEeEeeCCC--CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 99999998876643 23479999999988877776432 457799999999999988765 5778899988777655
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEE-ECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccc
Q 001336 600 DADGGLQASPCIRFNKEGILLAVS-TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTS 678 (1097)
Q Consensus 600 ~~~~~~~~v~~v~~s~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1097)
... ....+++|+|++++++++ ..++.|++||+.++ +....+..
T Consensus 154 ~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~-------------------------------- 197 (300)
T TIGR03866 154 LVD---QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITF-------------------------------- 197 (300)
T ss_pred EcC---CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeee--------------------------------
Confidence 432 235689999999988655 45899999998776 22221110
Q ss_pred cccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeec
Q 001336 679 LGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA 758 (1097)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~ 758 (1097)
...+.
T Consensus 198 ---------------------------------------------------------------------~~~~~------ 202 (300)
T TIGR03866 198 ---------------------------------------------------------------------EIPGV------ 202 (300)
T ss_pred ---------------------------------------------------------------------ccccc------
Confidence 00000
Q ss_pred cCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEcCC
Q 001336 759 SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMT 836 (1097)
Q Consensus 759 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~ 836 (1097)
.. .......++|+|++++++++. ++.+.+||..+
T Consensus 203 ~~--------------------------------------------~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 203 HP--------------------------------------------EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred cc--------------------------------------------ccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 00 011123577888888765543 67899999988
Q ss_pred CceeEEeCCCCCCeEEEEEeCCCCCEEEEE-ECCCcEEEEEcccceEEEEecccccCeEEEEEec
Q 001336 837 FKTMTTFMPPPPAATFLAFHPQDNNIIAIG-MEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSN 900 (1097)
Q Consensus 837 ~~~~~~~~~~~~~i~~l~~sp~~~~~la~g-~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~ 900 (1097)
++....+. +...+.+++|+| ++++|+++ ..+|.|.+||+.+++++..++.. ...+.++++|
T Consensus 239 ~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 239 YEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 88776653 445789999999 88888876 46899999999999999988765 4458888865
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=5.7e-20 Score=202.55 Aligned_cols=276 Identities=11% Similarity=0.058 Sum_probs=203.4
Q ss_pred EEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEE-EEEECCCEEEEEEccC
Q 001336 334 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF-GVAYSKHIVHLYTYHG 412 (1097)
Q Consensus 334 lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l-as~~~dg~i~iwd~~~ 412 (1097)
++++++.|+.|.+||..+++.+.. +..+ ..+.+++|+|+++.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 678999999999999998876543 2333 346789999999977 5667889999999998
Q ss_pred CeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcC
Q 001336 413 GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT 492 (1097)
Q Consensus 413 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 492 (1097)
++.... +..+.. +..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.+++| .++|.++++++.
T Consensus 63 ~~~~~~---~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~--~~dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIGT---LPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAV--SPDGKIVVNTSE 134 (300)
T ss_pred CcEEEe---ccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEE--CCCCCEEEEEec
Confidence 875542 433433 567899999984 345556789999999999888877763 334677887 556688888877
Q ss_pred CC-eEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCC------cceE
Q 001336 493 DG-KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK------RSVG 565 (1097)
Q Consensus 493 dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~ 565 (1097)
++ .+.+||.++........ .......++|+|+++++++.+. .++.|.+||+++++.+..+..+.. ....
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 56778987655443332 2335578999999998876542 244799999999987776543211 1234
Q ss_pred EEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEE-ECCCcEEEEEcCCCceEEEE
Q 001336 566 VVQFDTTKNRFLAA-GDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS-TNDNGIKILANADGIRLLRT 643 (1097)
Q Consensus 566 ~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~ 643 (1097)
.++|+|++++++++ +.++.|.+||..+++.+..+.. ...+.+++|+|+|++|+++ +.+|.|++||+.++ +.+..
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~ 286 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV---GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKS 286 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe---CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 57899999986554 4677899999999888766542 2357899999999999886 46899999999988 55555
Q ss_pred ec
Q 001336 644 VE 645 (1097)
Q Consensus 644 ~~ 645 (1097)
++
T Consensus 287 ~~ 288 (300)
T TIGR03866 287 IK 288 (300)
T ss_pred EE
Confidence 54
No 141
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3e-21 Score=188.10 Aligned_cols=253 Identities=12% Similarity=0.200 Sum_probs=193.7
Q ss_pred eEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001336 384 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ 463 (1097)
Q Consensus 384 V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~ 463 (1097)
-.|+.||+.|.+||+|..||.|.|||+.+... . ..+.+|..+|++++||+||+ .|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i-a--r~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI-A--RMLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch-h--hhhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 78999999999999999999999999998652 2 25889999999999999999 8999999999999999999999
Q ss_pred EEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCC----ceEEEEEccCCCEEEEeeeCCCCC
Q 001336 464 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH----SSTMMAYSADGARLFSCGTNKEGE 539 (1097)
Q Consensus 464 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~~~~~~ 539 (1097)
+.++ ...+|+.+.|+|......+++--. ..-.+-++........-....+ ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~-~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIME-ESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEec-CCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9887 788999999998877555554433 3334444443222221111111 1223458999999999853 6
Q ss_pred ceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------ce--EEEEecCCCCCCcce
Q 001336 540 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV-------NL--LASIDADGGLQASPC 610 (1097)
Q Consensus 540 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~--~~~~~~~~~~~~v~~ 610 (1097)
+.+.++|..+.+++..++-.....|..+.++..|++|+.-+.|+.|+.|+...- ++ .+.++.--+...-++
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 689999999999998887766447889999999999999999999999997631 11 111111111223358
Q ss_pred EEEcCCCCEEEEEEC-CCcEEEEEcCCCceEEEEecccc
Q 001336 611 IRFNKEGILLAVSTN-DNGIKILANADGIRLLRTVESRT 648 (1097)
Q Consensus 611 v~~s~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~ 648 (1097)
++|+.+|.+++.++. ...++||....| .+++.+.|..
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~k 292 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTK 292 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCc
Confidence 899999999988764 467999999888 8888887755
No 142
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=4.5e-21 Score=202.36 Aligned_cols=244 Identities=10% Similarity=0.153 Sum_probs=196.9
Q ss_pred cccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001336 375 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 454 (1097)
Q Consensus 375 ~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~i 454 (1097)
.++.||++.|.||+..|.|.+||+|+.||+|+||.+.+|.|++... -.+.|.|++|+|.+...+|+.+-.+. +.|
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~----~d~~I~~vaw~P~~~~~vLAvA~~~~-~~i 468 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----FDSEIRSVAWNPLSDLCVLAVAVGEC-VLI 468 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe----ecceeEEEEecCCCCceeEEEEecCc-eEE
Confidence 3588999999999999999999999999999999999999987542 34579999999998864555544333 444
Q ss_pred EECCCCc-------------------------------------eeEEeecCCcCeEEEeecccCCccEEEEEcC---CC
Q 001336 455 WDAVTGT-------------------------------------KQYIFEGHESPVYSICPHHKENIQFIFSTAT---DG 494 (1097)
Q Consensus 455 wd~~~~~-------------------------------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg 494 (1097)
-+..-|. -++..-.|...|..+.|+ ..|.+|++... ..
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWH--rkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWH--RKGDYLATVMPDSGNK 546 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeee--cCCceEEEeccCCCcc
Confidence 4322220 012233477888899885 45678988754 45
Q ss_pred eEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCC
Q 001336 495 KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN 574 (1097)
Q Consensus 495 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 574 (1097)
.|.|.++.....+.-+....+.+..+.|+|...+|++++. ..|++||+..+++++++..... .|..++++|.|.
T Consensus 547 ~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-----~~vRiYdL~kqelvKkL~tg~k-wiS~msihp~GD 620 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-----RSVRIYDLSKQELVKKLLTGSK-WISSMSIHPNGD 620 (733)
T ss_pred eEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-----cceEEEehhHHHHHHHHhcCCe-eeeeeeecCCCC
Confidence 7889999877777777777789999999999999998873 4699999999888888776665 899999999999
Q ss_pred EEEEEeCCCcEEEEECCCC-ceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEE
Q 001336 575 RFLAAGDEFMIKFWDMDNV-NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 633 (1097)
Q Consensus 575 ~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~ 633 (1097)
.|+.++.|+.+..+|++-. ++.+++..| ...+++|+|++.-.++++|++||++.|+.
T Consensus 621 nli~gs~d~k~~WfDldlsskPyk~lr~H--~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLSSKPYKTLRLH--EKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred eEEEecCCCeeEEEEcccCcchhHHhhhh--hhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 9999999999999999854 567777766 67899999999999999999999999985
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=2.7e-21 Score=205.84 Aligned_cols=291 Identities=15% Similarity=0.110 Sum_probs=211.3
Q ss_pred CCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCe
Q 001336 750 SGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGK 828 (1097)
Q Consensus 750 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~ 828 (1097)
....|+.+.++|.|.++|.....+. ++..++.. .. .|...|..+.|-|....|++++ |.+
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr---------------~ee~~lk~--~~--aH~nAifDl~wapge~~lVsasGDsT 123 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFR---------------LEERQLKK--PL--AHKNAIFDLKWAPGESLLVSASGDST 123 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcc---------------hhhhhhcc--cc--cccceeEeeccCCCceeEEEccCCce
Confidence 3456888888999999987643321 11111111 22 3999999999999777888887 899
Q ss_pred EEEEEcCCCceeEE--eCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccce-------------------------
Q 001336 829 ISLFNMMTFKTMTT--FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE------------------------- 881 (1097)
Q Consensus 829 i~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~------------------------- 881 (1097)
+++||+++.++... +.+|.+.+.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 124 ~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~ 203 (720)
T KOG0321|consen 124 IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL 203 (720)
T ss_pred eeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence 99999999998887 899999999999999888999999999999999985321
Q ss_pred --EEEEecccccCeEE---EEEecCCCEEEEEeC-CCcEEEEEcCCCcccc----eeeEeecCCCCCCccCCeEEEEcCC
Q 001336 882 --VKTKLKGHQKRITG---LAFSNTLNVLVSSGA-DSQLCVWSTDGWEKQA----SKFLTIPNGRTASALADTRVQFHLD 951 (1097)
Q Consensus 882 --~~~~l~~h~~~V~~---l~~s~dg~~l~s~~~-Dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~v~~l~~s~d 951 (1097)
.+....+|...|.+ +.+..|...||++|. |+.|+|||+....... ......+. +....-.+.++.....
T Consensus 204 ~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t-~skrs~G~~nL~lDss 282 (720)
T KOG0321|consen 204 KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPT-HSKRSVGQVNLILDSS 282 (720)
T ss_pred hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccC-cccceeeeEEEEecCC
Confidence 11122345556666 666788899999988 9999999998744211 11111111 1111245777888888
Q ss_pred CcEEEE-EeCCeEEEEeCCCcceeeeeeccCC--CCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCC
Q 001336 952 QTHLLA-VHETQIAIYEAPKLECLKQFVPREA--SGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLP 1028 (1097)
Q Consensus 952 g~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h--~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~ 1028 (1097)
|.+|++ +.|+.|++|++.+...-......+| ..--..-..|||+.+|++|+.|..+.+|.+.+.+.- ..+.
T Consensus 283 Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~------~~~l 356 (720)
T KOG0321|consen 283 GTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP------PALL 356 (720)
T ss_pred CCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC------hhhh
Confidence 899988 6899999999987654333222233 112223456999999999999999999999886542 2233
Q ss_pred CCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCCC
Q 001336 1029 TNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1068 (1097)
Q Consensus 1029 ~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~~ 1068 (1097)
.||+-.|+.+ +|.|..-.-++++++|.++++|++..+.
T Consensus 357 ~Ght~eVt~V--~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 357 LGHTREVTTV--RWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred hCcceEEEEE--eeccccCCCceeeccCcceEEEeccCch
Confidence 4788999877 6666656678888999999999996544
No 144
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=2.8e-21 Score=198.89 Aligned_cols=255 Identities=18% Similarity=0.276 Sum_probs=192.6
Q ss_pred CCccccc---cccccccceeeCCCCCCcceeecCCCCce---------EEEEeecCCCeeEEEEccCCCeEEEEEeCCCe
Q 001336 276 GISDEVN---NLSVNILPVAYTPQSLGQSSYSTDDLPKT---------VVMTLNQGSAVKSMDFHPVQQILLVVGTNMGD 343 (1097)
Q Consensus 276 ~h~~~v~---~l~~~~~~~~~s~~~~~~~~~~~~~~~~~---------~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~ 343 (1097)
.|..||+ .++.....++--..+..+.+++....+.. .+...+|...=+++.|++...-.|++|+.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 3444444 33444444443334444555543333221 12344487778889999988878899999999
Q ss_pred EEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc-CCCEEEEEECCCEEEEEEccCCeeeeeeeee
Q 001336 344 VMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEI 422 (1097)
Q Consensus 344 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l 422 (1097)
|++||++...... ....+..++.+|+..|..++|++ +..++++++.|+.+.|||++++ ..+.....
T Consensus 202 i~lwdi~~~~~~~------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~ 268 (422)
T KOG0264|consen 202 ICLWDINAESKED------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSV 268 (422)
T ss_pred EEEEeccccccCC------------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccc
Confidence 9999998665421 00112235889999999999999 6778899999999999999974 33444467
Q ss_pred ecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEc
Q 001336 423 EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 501 (1097)
Q Consensus 423 ~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 501 (1097)
.+|.+.|.|++|+|-+.. +|+|||.|++|++||+++- ++++++.+|...|.++.|+|..+ ..|++++.|+.+.+||+
T Consensus 269 ~ah~~~vn~~~fnp~~~~-ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e-tvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 269 KAHSAEVNCVAFNPFNEF-ILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE-TVLASSGTDRRLNVWDL 346 (422)
T ss_pred cccCCceeEEEeCCCCCc-eEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC-ceeEecccCCcEEEEec
Confidence 899999999999998876 8999999999999999874 57889999999999999998766 79999999999999998
Q ss_pred CCCCce--------------eeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCC
Q 001336 502 DNLGSR--------------VDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 548 (1097)
Q Consensus 502 ~~~~~~--------------~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 548 (1097)
..-... +...+|...|..+.|+|+...+++... .++.+.||.+.
T Consensus 347 s~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva---eDN~LqIW~~s 404 (422)
T KOG0264|consen 347 SRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA---EDNILQIWQMA 404 (422)
T ss_pred cccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec---CCceEEEeecc
Confidence 753332 445566678999999999987766543 25689999875
No 145
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=1.7e-19 Score=191.98 Aligned_cols=276 Identities=13% Similarity=0.191 Sum_probs=215.3
Q ss_pred CceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001336 515 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN 594 (1097)
Q Consensus 515 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 594 (1097)
+.|..++|-|||..|+.+..+ .+.+||...|.+++++++|.+ .|.+++|+.+|+.+++|+.|..|.+|+..-.-
T Consensus 13 hci~d~afkPDGsqL~lAAg~-----rlliyD~ndG~llqtLKgHKD-tVycVAys~dGkrFASG~aDK~VI~W~~klEG 86 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAGS-----RLLVYDTSDGTLLQPLKGHKD-TVYCVAYAKDGKRFASGSADKSVIIWTSKLEG 86 (1081)
T ss_pred cchheeEECCCCceEEEecCC-----EEEEEeCCCcccccccccccc-eEEEEEEccCCceeccCCCceeEEEecccccc
Confidence 378999999999998887643 599999999999999999998 99999999999999999999999999865332
Q ss_pred eEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccc
Q 001336 595 LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANAN 674 (1097)
Q Consensus 595 ~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1097)
.+. + .|...|.|+.|+|-...+++++-. ..-+|......
T Consensus 87 ~Lk-Y---SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~------------------------------------ 125 (1081)
T KOG1538|consen 87 ILK-Y---SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS------------------------------------ 125 (1081)
T ss_pred eee-e---ccCCeeeEeecCchHHHhhhcchh-hccccChhhhh------------------------------------
Confidence 222 2 447789999999998899988754 35566543320
Q ss_pred cccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCcee
Q 001336 675 VGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAI 754 (1097)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l 754 (1097)
+. ......++.+.+|..||+++
T Consensus 126 ---------------------------------------V~-------------------K~kss~R~~~CsWtnDGqyl 147 (1081)
T KOG1538|consen 126 ---------------------------------------VS-------------------KHKSSSRIICCSWTNDGQYL 147 (1081)
T ss_pred ---------------------------------------HH-------------------hhhhheeEEEeeecCCCcEE
Confidence 00 00134678899999999999
Q ss_pred eeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCC-----CEEEEEe-CCe
Q 001336 755 LALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND-----SYVMSAS-GGK 828 (1097)
Q Consensus 755 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-----~~la~~s-dg~ 828 (1097)
+.|-.||+|.+-+-.. .+...+.-+| +...+|.+++|+|+. ..+++.. ..+
T Consensus 148 alG~~nGTIsiRNk~g----------------------Eek~~I~Rpg-g~Nspiwsi~~~p~sg~G~~di~aV~DW~qT 204 (1081)
T KOG1538|consen 148 ALGMFNGTISIRNKNG----------------------EEKVKIERPG-GSNSPIWSICWNPSSGEGRNDILAVADWGQT 204 (1081)
T ss_pred EEeccCceEEeecCCC----------------------CcceEEeCCC-CCCCCceEEEecCCCCCCccceEEEEeccce
Confidence 9999999999853221 1112222333 478999999999863 4677777 677
Q ss_pred EEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEE
Q 001336 829 ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS 908 (1097)
Q Consensus 829 i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~ 908 (1097)
+.+|.+ +|+.+..-+.-.-...|+.+-+ +|.++..|+.|+.+.+|. +.|-.+.++-.....|+.++..|+++.++.|
T Consensus 205 LSFy~L-sG~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~G 281 (1081)
T KOG1538|consen 205 LSFYQL-SGKQIGKDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVG 281 (1081)
T ss_pred eEEEEe-cceeecccccCCCCchhheecc-CCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEE
Confidence 888887 4555554444455678999999 999999999999999997 4566677777777889999999999999999
Q ss_pred eCCCcEEEEEcCC
Q 001336 909 GADSQLCVWSTDG 921 (1097)
Q Consensus 909 ~~Dg~i~iwd~~~ 921 (1097)
+.||+|--|++..
T Consensus 282 CqDGTiACyNl~f 294 (1081)
T KOG1538|consen 282 CQDGTIACYNLIF 294 (1081)
T ss_pred EccCeeehhhhHH
Confidence 9999999887643
No 146
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2e-22 Score=217.28 Aligned_cols=237 Identities=17% Similarity=0.310 Sum_probs=212.6
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 456 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 456 (1097)
+..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 45688999999997789999999999999999987654333 4889999999999999988 899999999999999
Q ss_pred CCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCC
Q 001336 457 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 536 (1097)
Q Consensus 457 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 536 (1097)
++.++.++++.+|...+.++.|+| -+.+.++|+.|+.+++||++..++...+..|...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 999999999999999999999855 5588999999999999999999999999998889999999999999999875
Q ss_pred CCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCC
Q 001336 537 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 616 (1097)
Q Consensus 537 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 616 (1097)
+..+++||...|+....|.+|.. .+..+.|+|..-.++.|+.|++|++||+++-+.+...... ...|.+.+|+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPD 249 (825)
T ss_pred --cceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCC
Confidence 45799999999999999999987 8999999999888999999999999999988888777644 678999999999
Q ss_pred CCEEEEEECCC
Q 001336 617 GILLAVSTNDN 627 (1097)
Q Consensus 617 ~~~l~s~~~dg 627 (1097)
+..+++|..+.
T Consensus 250 ~~~~~~G~q~s 260 (825)
T KOG0267|consen 250 GKIVLSGEQIS 260 (825)
T ss_pred ceeeecCchhh
Confidence 99998886653
No 147
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=4.1e-20 Score=187.01 Aligned_cols=303 Identities=19% Similarity=0.189 Sum_probs=218.0
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
...+|..+.|.++..-.+|+|+.|..|+||.++.+..-... ........+..|..+|+++.|+|+|..||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCcCeee
Confidence 56789999999988756799999999999998765432200 00012235889999999999999999999
Q ss_pred EEECCCEEEEEEcc--------C-----CeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001336 398 VAYSKHIVHLYTYH--------G-----GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY 464 (1097)
Q Consensus 398 s~~~dg~i~iwd~~--------~-----~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~ 464 (1097)
+|+.+|.|.+|... + .+.......+.+|...|..++|+||+. ++++++.|+.+++||+..|..+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999876 2 111233446789999999999999999 89999999999999999999999
Q ss_pred EeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeec-------------------CCC----CceEEEE
Q 001336 465 IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-------------------APG----HSSTMMA 521 (1097)
Q Consensus 465 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------~~~----~~v~~~~ 521 (1097)
.+..|...|..++|. +-++++++-+.|...+.+.+.......... .|. .-...++
T Consensus 160 ~~~dh~~yvqgvawD--pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWD--PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred eccccccccceeecc--hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 999999999999994 445889998888866666554332221110 001 1235678
Q ss_pred EccCCCEEEEeeeC----CCC-CceEEEEeCCC-CeeeEEecCCCCcceEEEEEcC------------------CCCEEE
Q 001336 522 YSADGARLFSCGTN----KEG-ESYLVEWNESE-GAVKRTYHGLGKRSVGVVQFDT------------------TKNRFL 577 (1097)
Q Consensus 522 ~s~~~~~l~~~~~~----~~~-~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~------------------~~~~l~ 577 (1097)
|+|+|..+++...- +.- .+..++++-.. .++...+.+... ....+.|+| .+-.++
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 99999999875421 110 12234444221 123333333332 333333333 222344
Q ss_pred EEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 578 AAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 578 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
.+ ....|++||.++-.++..+.. -|...++.++|+++|..++..+.||...+..++..
T Consensus 317 iA-t~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 317 IA-TKNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred Ee-ecceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 44 456899999999888888754 33678999999999999999999999888777665
No 148
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=1.5e-20 Score=200.18 Aligned_cols=285 Identities=16% Similarity=0.224 Sum_probs=209.9
Q ss_pred cCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCCEEEEE
Q 001336 329 PVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLY 408 (1097)
Q Consensus 329 pdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iw 408 (1097)
|..+++||.+..||.|.++|.....-. ++.+ +......|...|..+.|-|-...|++++.|.++++|
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr---------~ee~----~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFR---------LEER----QLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcc---------hhhh----hhcccccccceeEeeccCCCceeEEEccCCceeeee
Confidence 455679999999999999998754321 0000 111245799999999999977789999999999999
Q ss_pred EccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCce--------------------------
Q 001336 409 TYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-------------------------- 462 (1097)
Q Consensus 409 d~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~-------------------------- 462 (1097)
|+++++.+... .+.||.+.|.+++|.|++.. .|++|+.||.|.|||++-...
T Consensus 128 dvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 128 DVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 99998866543 47799999999999999887 799999999999999863220
Q ss_pred -eEEeecCCcCeEE----EeecccCCccEEEEEcC-CCeEEEEEcCCCCceeeec--------CC---CCceEEEEEccC
Q 001336 463 -QYIFEGHESPVYS----ICPHHKENIQFIFSTAT-DGKIKAWLYDNLGSRVDYD--------AP---GHSSTMMAYSAD 525 (1097)
Q Consensus 463 -~~~~~~h~~~v~~----~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~--------~~---~~~v~~~~~s~~ 525 (1097)
+.....|...|.+ +.| .|...|++++. |+.|+|||++......... .+ ...+.++.....
T Consensus 206 r~~k~kA~s~ti~ssvTvv~f---kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss 282 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLF---KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS 282 (720)
T ss_pred cccccccccCceeeeeEEEEE---eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence 0111223333433 433 33368888887 9999999998655433221 11 236788888888
Q ss_pred CCEEEEeeeCCCCCceEEEEeCCCC--eeeEEecCCCCcceE-EEEEcCCCCEEEEEeCCCcEEEEECCCCceE-EEEec
Q 001336 526 GARLFSCGTNKEGESYLVEWNESEG--AVKRTYHGLGKRSVG-VVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL-ASIDA 601 (1097)
Q Consensus 526 ~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~ 601 (1097)
|.+|.+.+.|+ .|+.|++.+- .++..+.++....++ .-..+|++.++++|+.|...++|.+.+-+.- ..+.
T Consensus 283 Gt~L~AsCtD~----sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~- 357 (720)
T KOG0321|consen 283 GTYLFASCTDN----SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLL- 357 (720)
T ss_pred CCeEEEEecCC----cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhh-
Confidence 99988888654 6999998764 345555555442332 2367899999999999999999999875433 3344
Q ss_pred CCCCCCcceEEEcCC-CCEEEEEECCCcEEEEEcCCC
Q 001336 602 DGGLQASPCIRFNKE-GILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 602 ~~~~~~v~~v~~s~~-~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
+|...|++++|.|. -.-++++++|..++||++.++
T Consensus 358 -Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 358 -GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred -CcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 44778999999983 345677799999999999766
No 149
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.8e-20 Score=190.33 Aligned_cols=241 Identities=12% Similarity=0.173 Sum_probs=190.4
Q ss_pred CCCEEEEEECCCEEEEEEccCCeeeeeeeee------------------ecccCcEEEEEEecCCCcEEEEEEeCCCcEE
Q 001336 392 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEI------------------EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 453 (1097)
Q Consensus 392 d~~~las~~~dg~i~iwd~~~~~~~~~~~~l------------------~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 453 (1097)
-|+|+|.|+.|..|.|||+.--..+.+..+| .+|+..|.+++|+..-++ .|++||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence 4789999999999999998643333222222 379999999999988777 899999999999
Q ss_pred EEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEee
Q 001336 454 VWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG 533 (1097)
Q Consensus 454 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 533 (1097)
+||+.+|++..++..|.+.|.++.|++... .+|++|+.|++|.+.|.+..........-.+.|..++|.|.....+.++
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEe
Confidence 999999999999999999999999987654 7999999999999999985433333333355889999999887777666
Q ss_pred eCCCCCceEEEEeCCCC-eeeEEecCCCCcceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceE
Q 001336 534 TNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCI 611 (1097)
Q Consensus 534 ~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 611 (1097)
.+ +++++-+|++.. +++.++..|.+ .|.++++++.. ..+++++.|+.|++|++.....-.+....-..+...|.
T Consensus 349 td---dG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 349 TD---DGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCF 424 (463)
T ss_pred cC---CceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeec
Confidence 43 568999999876 89999999998 99999998866 56778889999999998765443222211113335677
Q ss_pred EEcCCC-CEEEEEECCCcEEEEEcCCCc
Q 001336 612 RFNKEG-ILLAVSTNDNGIKILANADGI 638 (1097)
Q Consensus 612 ~~s~~~-~~l~s~~~dg~i~iw~~~~~~ 638 (1097)
++.|+- ..++.|+..+.++|||+.+..
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ccCCCcceEEEecCccceEEEeecccCh
Confidence 788854 567788888899999998773
No 150
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.4e-21 Score=210.91 Aligned_cols=245 Identities=11% Similarity=0.214 Sum_probs=196.0
Q ss_pred CeeEEEEccCCCeEEEEEeCCCeEEEEEcCC---CceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc-CCCEE
Q 001336 321 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGS---RERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTLF 396 (1097)
Q Consensus 321 ~V~~v~fspdg~~lla~gs~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~l 396 (1097)
.+..|+|+.--..+||+++..|.|.+||+.. ++++. ++..|+..|+++.|++ .-.+|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~-------------------~f~EH~Rs~~~ldfh~tep~il 149 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLT-------------------VFNEHERSANKLDFHSTEPNIL 149 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhh-------------------HhhhhccceeeeeeccCCccEE
Confidence 4556788865556889999999999999986 33222 4889999999999998 56789
Q ss_pred EEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEeecCCcCeEE
Q 001336 397 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYS 475 (1097)
Q Consensus 397 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~ 475 (1097)
++|+.||+|++||++..+... ++.+....|..+.|+|...+ .++++...|.+++||++.. ++...+..|.++|.|
T Consensus 150 iSGSQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred EecCCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 999999999999999876444 46678889999999997665 8999999999999999865 566788999999999
Q ss_pred EeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCC-CCceEEEEEccCCCE-EEEeeeCCCCCceEEEEeCCCC-ee
Q 001336 476 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP-GHSSTMMAYSADGAR-LFSCGTNKEGESYLVEWNESEG-AV 552 (1097)
Q Consensus 476 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~-~~ 552 (1097)
+.|+| ++.+|+|||.|+.|+|||+...........+ ..++..+.|-|...+ |++++.- .+..|++||++.. .+
T Consensus 226 ~nwhP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv--~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 226 LNWHP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMV--VDTSVHVWDVRRPYIP 301 (839)
T ss_pred EeecC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhcc--ccceEEEEeecccccc
Confidence 99966 6689999999999999999876555444433 458999999997765 5555442 3667999999876 45
Q ss_pred eEEecCCCCcceEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q 001336 553 KRTYHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNV 593 (1097)
Q Consensus 553 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 593 (1097)
..++..|.. .++.++|.. +...+.+++.||.|..-..+++
T Consensus 302 ~~t~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 302 YATFLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeeccCc-cccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 567777776 888899965 4467888889998876555543
No 151
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3.7e-20 Score=195.48 Aligned_cols=280 Identities=14% Similarity=0.271 Sum_probs=208.3
Q ss_pred eeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCC--CEEEEEECCCc
Q 001336 551 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG--ILLAVSTNDNG 628 (1097)
Q Consensus 551 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~s~~~dg~ 628 (1097)
.+...+.||.+ .|.++...|.|.+|++|+.||+|+||.+.+|.++.++... ..|.|++|+|.+ ..||++-.+ .
T Consensus 391 ~~~lvyrGHtg-~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~vLAvA~~~-~ 465 (733)
T KOG0650|consen 391 RCALVYRGHTG-LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLCVLAVAVGE-C 465 (733)
T ss_pred eeeeeEeccCC-eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCceeEEEEecC-c
Confidence 34556788887 9999999999999999999999999999999999999764 368999999965 345555444 4
Q ss_pred EEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCccccc
Q 001336 629 IKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIAD 708 (1097)
Q Consensus 629 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1097)
+.|.+..-|.+... +.+.... +.. | .-.
T Consensus 466 ~~ivnp~~G~~~e~---~~t~ell----------------~~~-----~----------------------------~~~ 493 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEV---GPTKELL----------------ASA-----P----------------------------NES 493 (733)
T ss_pred eEEeCccccchhhh---cchhhhh----------------hcC-----C----------------------------Ccc
Confidence 66655443311110 0000000 000 0 001
Q ss_pred ccccccccccccccCCCc--eeeEeccCCCcCccceEEEEEccCCceeeeeccC---cEEEEeccCCCCCCccCcccccc
Q 001336 709 EAVEKSRIWKLTEITEPS--QCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN---AVHKLWKWPRNERNSTGKATTNQ 783 (1097)
Q Consensus 709 ~~d~~i~~w~~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~ 783 (1097)
..+..+..|.-....+.. .+..+. |...|..+.|+..|.+|++...+ ..|.|+++...
T Consensus 494 ~p~~~~~~W~~~~~~e~~~~v~~~I~-----~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~------------ 556 (733)
T KOG0650|consen 494 EPDAAVVTWSRASLDELEKGVCIVIK-----HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR------------ 556 (733)
T ss_pred CCcccceeechhhhhhhccceEEEEe-----cCCccceeeeecCCceEEEeccCCCcceEEEEecccc------------
Confidence 112355667654332222 223332 78899999999999999988764 56777766532
Q ss_pred CCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEE
Q 001336 784 APQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 863 (1097)
Q Consensus 784 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~l 863 (1097)
..+ ..+.- ..+.|.++.|+|...+|++++...|+|||+..++.++.+......|..++++| .|..|
T Consensus 557 ----------~sQ-~PF~k--skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnl 622 (733)
T KOG0650|consen 557 ----------KSQ-SPFRK--SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNL 622 (733)
T ss_pred ----------ccc-Cchhh--cCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeE
Confidence 111 11211 46789999999999999999999999999999888888887777899999999 88999
Q ss_pred EEEECCCcEEEEEcccc-eEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001336 864 AIGMEDSSIQIYNVRVD-EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918 (1097)
Q Consensus 864 a~g~~dg~v~vwd~~~~-~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd 918 (1097)
+.|+.|+.+..||+.-+ +..++++-|...+++++|++.-.++++|+.||++.|+-
T Consensus 623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 99999999999999854 56788999999999999999999999999999999885
No 152
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.4e-19 Score=176.29 Aligned_cols=255 Identities=12% Similarity=0.179 Sum_probs=191.6
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCC-eeeeeeeeeecccCcEEEEEEecC--CCcEEEEEEeCCCcEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG-DELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIK 453 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~-~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~ 453 (1097)
-.+|.+-|.|+.|.+.|+.+|+|+.|++|+|||.+.. ...........|.+.|..+.|.+- |+ .+++++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 5689999999999999999999999999999996533 224455568899999999999764 55 899999999999
Q ss_pred EEECCC------C---ceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCcee------eec-------
Q 001336 454 VWDAVT------G---TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV------DYD------- 511 (1097)
Q Consensus 454 iwd~~~------~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------~~~------- 511 (1097)
||.-.. + ....++......|++++|.|..-|-.+++++.||.+|||+.-...... ++.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 998521 1 123466777889999999999889999999999999999764322211 111
Q ss_pred CCCCceEEEEEccC---CCEEEEeeeC-CCCCceEEEEeCCCC----eeeEEecCCCCcceEEEEEcCCC----CEEEEE
Q 001336 512 APGHSSTMMAYSAD---GARLFSCGTN-KEGESYLVEWNESEG----AVKRTYHGLGKRSVGVVQFDTTK----NRFLAA 579 (1097)
Q Consensus 512 ~~~~~v~~~~~s~~---~~~l~~~~~~-~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~ 579 (1097)
.+.....|+.|+|. ..+|+.++.+ ....+.+.+|....+ ..+.++.++.. +|+.++|.|+- ..|+++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEe
Confidence 12336778899863 3467777643 112235677765433 34556777776 99999999964 578889
Q ss_pred eCCCcEEEEECCCCc-----------------eEEEEe-cCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001336 580 GDEFMIKFWDMDNVN-----------------LLASID-ADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 580 ~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~ 635 (1097)
+.|| |+||++.... .+..+. ...|...|..+.|+-.|..|++.++||.||+|...
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999 9999987311 122222 23557789999999999999999999999999753
No 153
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.2e-20 Score=205.41 Aligned_cols=298 Identities=12% Similarity=0.177 Sum_probs=224.6
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc-CCCEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTLF 396 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~l 396 (1097)
-+....+|...++-..++++|- ....||.++...... ++.+..-. -..-...+..|.|+. +.++|
T Consensus 38 ~k~~~nAIs~nr~~~qiv~AGr--s~lklyai~~~~~~~--~~~~~~k~----------kqn~~~S~~DVkW~~~~~NlI 103 (839)
T KOG0269|consen 38 LKAKANAISVNRDINQIVVAGR--SLLKLYAINPNDFSE--KCNHRFKT----------KQNKFYSAADVKWGQLYSNLI 103 (839)
T ss_pred cccccceEeecCCcceeEEecc--cceeeEeeCcccCCc--ceeeeccc----------ccceeeehhhcccccchhhhh
Confidence 4456677788888776655543 245666655432211 11110000 001112455678876 78899
Q ss_pred EEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEE
Q 001336 397 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 476 (1097)
Q Consensus 397 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 476 (1097)
|+++..|.|.+||+.....-+....+..|...++++.|++...+ +|++||.||+|++||++..+-..++.+....|.++
T Consensus 104 AT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV 182 (839)
T KOG0269|consen 104 ATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDV 182 (839)
T ss_pred eeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhce
Confidence 99999999999999862111222357889999999999998877 89999999999999999999999999999999999
Q ss_pred eecccCCccEEEEEcCCCeEEEEEcCCCC-ceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEE
Q 001336 477 CPHHKENIQFIFSTATDGKIKAWLYDNLG-SRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 555 (1097)
Q Consensus 477 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 555 (1097)
.|++.. +..++++.+.|.+++||++... ....+..|.++|.++.|+|++.+|++||.|+ +|++||+.+.+.-..
T Consensus 183 ~fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK----~vkiWd~t~~~~~~~ 257 (839)
T KOG0269|consen 183 KFSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK----MVKIWDMTDSRAKPK 257 (839)
T ss_pred eeccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCc----cEEEEeccCCCccce
Confidence 999876 5899999999999999998654 4566788999999999999999999998654 799999987765555
Q ss_pred ecCCCCcceEEEEEcCCCCE-EEEEe--CCCcEEEEECCCC-ceEEEEecCCCCCCcceEEEcC-CCCEEEEEECCCcEE
Q 001336 556 YHGLGKRSVGVVQFDTTKNR-FLAAG--DEFMIKFWDMDNV-NLLASIDADGGLQASPCIRFNK-EGILLAVSTNDNGIK 630 (1097)
Q Consensus 556 ~~~~~~~~v~~~~~~~~~~~-l~~~~--~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~~dg~i~ 630 (1097)
..-+...++..+.|-|...+ |++++ .|-.|+|||++.. -+..++..| ...++.++|.. |...+.+++.||+|.
T Consensus 258 ~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 258 HTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred eEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc--CccccceeccCCCceeeEeecCccHHH
Confidence 55555568999999998754 55555 7889999999753 344556644 77889999976 567889999999887
Q ss_pred EEEcCCC
Q 001336 631 ILANADG 637 (1097)
Q Consensus 631 iw~~~~~ 637 (1097)
.-.++++
T Consensus 336 qh~~kna 342 (839)
T KOG0269|consen 336 QHLFKNA 342 (839)
T ss_pred Hhhhhcc
Confidence 6555554
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.9e-21 Score=219.28 Aligned_cols=252 Identities=13% Similarity=0.216 Sum_probs=207.5
Q ss_pred CCCeEEEEEccCCCE----EEEEECCCEEEEEEccC---CeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEE
Q 001336 381 TASVNRVMWSPDGTL----FGVAYSKHIVHLYTYHG---GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 453 (1097)
Q Consensus 381 ~~~V~~v~~spd~~~----las~~~dg~i~iwd~~~---~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 453 (1097)
....+.++|.+.|.. ||.|..||.|.+||... +.....+.+...|.+.|..+.|++...+ +|++|+.||.|.
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~ 142 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEIL 142 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEE
Confidence 457889999997765 89999999999999875 4434444567789999999999998877 899999999999
Q ss_pred EEECCCCceeEEee--cCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCC--ceEEEEEccCCCEE
Q 001336 454 VWDAVTGTKQYIFE--GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH--SSTMMAYSADGARL 529 (1097)
Q Consensus 454 iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l 529 (1097)
|||+.+-+.-.++. ...+.|.+++|+. ....+|++++.+|.+.|||++..+....+..+.. .+..++|+|++..-
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNr-kvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNR-KVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccch-hhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence 99998866555442 2457799999864 3347899999999999999999887777766554 57889999988644
Q ss_pred EEeeeCCCCCceEEEEeCCCC-eeeEEecCCCCcceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCC
Q 001336 530 FSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQA 607 (1097)
Q Consensus 530 ~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 607 (1097)
+....+.++...|.+||++.. ..++.+++|.. .|.++.|++.+ .++++++.|+.|.+|+.++++.+..+... ...
T Consensus 222 l~~As~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~--~nW 298 (1049)
T KOG0307|consen 222 LLVASGDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ--GNW 298 (1049)
T ss_pred eeeecCCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC--Ccc
Confidence 444444567889999999875 56778888887 89999999987 78889999999999999999999999764 568
Q ss_pred cceEEEcCCC-CEEEEEECCCcEEEEEcCCC
Q 001336 608 SPCIRFNKEG-ILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 608 v~~v~~s~~~-~~l~s~~~dg~i~iw~~~~~ 637 (1097)
+..+.|+|.. ..|++++-||.|.|+.+...
T Consensus 299 ~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 299 CFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred eeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 9999999955 58999999999999998765
No 155
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=3.8e-21 Score=207.55 Aligned_cols=233 Identities=13% Similarity=0.222 Sum_probs=206.6
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
|...|.|+..-..++ .+++|+.|..+-+|.+..-..+.. +.+|...|.|+.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcchhhhc
Confidence 677888888855565 678999999999998865443332 689999999999999999999
Q ss_pred EEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEe
Q 001336 398 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC 477 (1097)
Q Consensus 398 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 477 (1097)
+|+.+|+|++||++.++.++ +|.||...+..+.|+|-+. +.++|+.|+.+++||++...|.+.+.+|...|..+.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999887666 6999999999999999999 789999999999999999999999999999999999
Q ss_pred ecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEec
Q 001336 478 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 557 (1097)
Q Consensus 478 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 557 (1097)
| .++|.+++++++|.++++||...++....+..|...+..+.|+|..-+++.++.+ ..+++||+++.+.+-...
T Consensus 162 l--sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d----~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 162 L--SPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSD----RTVRFWDLETFEVISSGK 235 (825)
T ss_pred e--cCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCC----ceeeeeccceeEEeeccC
Confidence 9 6677999999999999999999999999999999999999999999888888764 479999999998888877
Q ss_pred CCCCcceEEEEEcCCCCEEEEEeCC
Q 001336 558 GLGKRSVGVVQFDTTKNRFLAAGDE 582 (1097)
Q Consensus 558 ~~~~~~v~~~~~~~~~~~l~~~~~d 582 (1097)
.... .|.+..|+|++..+++|...
T Consensus 236 ~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CccC-CceeeeecCCceeeecCchh
Confidence 7655 89999999999888887654
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=9.2e-17 Score=187.44 Aligned_cols=373 Identities=22% Similarity=0.382 Sum_probs=286.8
Q ss_pred eecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-eeEEeecCCc-CeEEEeecccCCcc-EEEEEcC-CCeEE
Q 001336 422 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIFEGHES-PVYSICPHHKENIQ-FIFSTAT-DGKIK 497 (1097)
Q Consensus 422 l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~-~v~~~~~~~~~~~~-~l~s~~~-dg~i~ 497 (1097)
+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence 567999999999999999 78888899999999998887 6777776443 77777775 55555 5555444 99999
Q ss_pred EEEcCC-CCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCC-E
Q 001336 498 AWLYDN-LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-R 575 (1097)
Q Consensus 498 iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 575 (1097)
+|+... ......+..+...+..++|+|+++.++.++. .+..+.+|+...+..+..+.+|.. .+.++.|+|++. .
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 213 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHTD-PVSSLAFSPDGGLL 213 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCCC-ceEEEEEcCCcceE
Confidence 999997 6777778888889999999999998877753 255799999999888888888776 899999999998 4
Q ss_pred EEEEeCCCcEEEEECCCCceEE-EEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccc
Q 001336 576 FLAAGDEFMIKFWDMDNVNLLA-SIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRV 654 (1097)
Q Consensus 576 l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 654 (1097)
+++++.|+.|++||...+..+. .+..| .... ...|++++..+++++.|+.+++|+..........+
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---------- 280 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRSTLSGH--SDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL---------- 280 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEeeecCCC--Ccce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE----------
Confidence 5555899999999988888777 56655 3332 22899999899999999999999987652211110
Q ss_pred cccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccC
Q 001336 655 ASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLP 734 (1097)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 734 (1097)
T Consensus 281 -------------------------------------------------------------------------------- 280 (466)
T COG2319 281 -------------------------------------------------------------------------------- 280 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEE
Q 001336 735 DNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFAL 814 (1097)
Q Consensus 735 ~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~ 814 (1097)
.+|...+.++.|.|++..+++++.|+.+.+|+...... ..... ...|...+..+.+
T Consensus 281 -~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~-~~~~~~~~~~~~~ 336 (466)
T COG2319 281 -SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL----------------------LSSLT-LKGHEGPVSSLSF 336 (466)
T ss_pred -ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce----------------------EEEee-ecccCCceEEEEE
Confidence 12567788999999998898888888899996553211 11000 0126667899999
Q ss_pred ccCCCEEEEE-e-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEE-EECCCcEEEEEcccceEEEEeccccc
Q 001336 815 SKNDSYVMSA-S-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAI-GMEDSSIQIYNVRVDEVKTKLKGHQK 891 (1097)
Q Consensus 815 s~dg~~la~~-s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~-g~~dg~v~vwd~~~~~~~~~l~~h~~ 891 (1097)
++++..++.+ . |+.+.+|+............. ..+..+.+++ + ..+.. +..++.+.+|+............+..
T Consensus 337 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (466)
T COG2319 337 SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTS 413 (466)
T ss_pred CCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCC
Confidence 4343566666 4 788999999887733333322 2288999998 6 55554 78999999999998887777665547
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001336 892 RITGLAFSNTLNVLVSSGADSQLCVWSTDG 921 (1097)
Q Consensus 892 ~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~ 921 (1097)
.+....+++++..+++++.++.+++|+...
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 414 RVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 789999999999999999999999999887
No 157
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.84 E-value=3.4e-19 Score=174.75 Aligned_cols=407 Identities=11% Similarity=0.122 Sum_probs=259.3
Q ss_pred EEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001336 386 RVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI 465 (1097)
Q Consensus 386 ~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 465 (1097)
-++|||+|+++|+++.- .+.|-|..+-+... +-.--..|..+.|.-|... .|.....|+.|.+|++...+....
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q----lf~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ----LFLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHH----HHHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 46899999999999877 67788877754322 1122456889999988875 566778899999999999998889
Q ss_pred eecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEE
Q 001336 466 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 545 (1097)
Q Consensus 466 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 545 (1097)
+..-..++.+++|+|++. .+|.+...|-.|.+|.+.+...... ......+..++|+|||++.+.++.. |....+.+.
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecc-cHHHHHHHH
Confidence 988889999999955432 5677778899999999987655443 3344567899999999999888642 222233333
Q ss_pred eCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEE
Q 001336 546 NESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 623 (1097)
Q Consensus 546 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~ 623 (1097)
.-....+++.+..... ..+.+.|+|||+.|+.-. -+-.|+.|.. .-.+..++|+|.+++|++|
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~--------------~lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYER--------------GLGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeee--------------ccceeEEEeccccceEEee
Confidence 3334455666665554 677899999998876533 2222332222 2346789999999999999
Q ss_pred ECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccC
Q 001336 624 TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVK 703 (1097)
Q Consensus 624 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1097)
+.|+.+|+.+--+- +.+..+. |
T Consensus 229 syD~~lrvlnh~tW-k~f~efl-h-------------------------------------------------------- 250 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTW-KPFGEFL-H-------------------------------------------------------- 250 (447)
T ss_pred ccchhhhhhceeee-eehhhhc-c--------------------------------------------------------
Confidence 99999998764322 1111110 0
Q ss_pred cccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCcccccc
Q 001336 704 PKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQ 783 (1097)
Q Consensus 704 ~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 783 (1097)
.++..|.+..+..-. .... -.-...++.|.|..- ...+|...... ......
T Consensus 251 --l~s~~dp~~~~~~ke------~~~~-------~ql~~~cLsf~p~~~---------~a~~~~~se~~-----YE~~~~ 301 (447)
T KOG4497|consen 251 --LCSYHDPTLHLLEKE------TFSI-------VQLLHHCLSFTPTDL---------EAHIWEESETI-----YEQQMT 301 (447)
T ss_pred --chhccCchhhhhhhh------hcch-------hhhcccccccCCCcc---------ccCccccchhh-----hhhhhc
Confidence 000001110000000 0000 001112344444321 01111110000 000000
Q ss_pred CCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEeC---CeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCC
Q 001336 784 APQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASG---GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDN 860 (1097)
Q Consensus 784 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sd---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~ 860 (1097)
-++ +..-+. ..+.+. ..-.+.-++||+|..++++-.| +.+.+||++..+....+. ...+|....|.| +.
T Consensus 302 pv~---~~~lkp-~tD~pn--Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~ 373 (447)
T KOG4497|consen 302 PVK---VHKLKP-PTDFPN--PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GR 373 (447)
T ss_pred cee---eecccC-CCCCCC--cccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CC
Confidence 000 000000 011222 4566788999999999999885 569999998776655544 567899999999 77
Q ss_pred CEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCC
Q 001336 861 NIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS 912 (1097)
Q Consensus 861 ~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg 912 (1097)
..|+.+.....+++|......++..-. ..-.|..+.|..+|..++..+.|.
T Consensus 374 prL~vctg~srLY~W~psg~~~V~vP~-~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 374 PRLVVCTGKSRLYFWAPSGPRVVGVPK-KGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred ceEEEEcCCceEEEEcCCCceEEecCC-CCceeeeEEecCCCcEEEEEcCCc
Confidence 888888878889999987766655433 336799999999999999999987
No 158
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.4e-18 Score=169.44 Aligned_cols=262 Identities=13% Similarity=0.209 Sum_probs=192.7
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc--CCCE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTL 395 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~~ 395 (1097)
|.+-|.++.|.+-|+++ |+++.|++|.|||.+...-....+- -.+.|.+.|..|.|-+ -|+.
T Consensus 12 h~DlihdVs~D~~GRRm-AtCSsDq~vkI~d~~~~s~~W~~Ts---------------~Wrah~~Si~rV~WAhPEfGqv 75 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRM-ATCSSDQTVKIWDSTSDSGTWSCTS---------------SWRAHDGSIWRVVWAHPEFGQV 75 (361)
T ss_pred CcceeeeeeecccCcee-eeccCCCcEEEEeccCCCCceEEee---------------eEEecCCcEEEEEecCccccce
Confidence 77889999999999986 8999999999999754432211111 1456999999999976 6999
Q ss_pred EEEEECCCEEEEEEccC------CeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCc------ee
Q 001336 396 FGVAYSKHIVHLYTYHG------GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT------KQ 463 (1097)
Q Consensus 396 las~~~dg~i~iwd~~~------~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~------~~ 463 (1097)
+|+++.|+++.||.-.. +..-.+..++......|+.+.|.|....+.+++++.||.+|||+...-- ..
T Consensus 76 vA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq 155 (361)
T KOG2445|consen 76 VATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ 155 (361)
T ss_pred EEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhh
Confidence 99999999999997521 1223344467778889999999998777799999999999999865432 22
Q ss_pred EEee-------cCCcCeEEEeecccCCc-cEEEEEcCC-----CeEEEEEcCCCCce----eeecCCCCceEEEEEccCC
Q 001336 464 YIFE-------GHESPVYSICPHHKENI-QFIFSTATD-----GKIKAWLYDNLGSR----VDYDAPGHSSTMMAYSADG 526 (1097)
Q Consensus 464 ~~~~-------~h~~~v~~~~~~~~~~~-~~l~s~~~d-----g~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~~ 526 (1097)
++++ .+..+..|+.|+++.-. .+|+.|+.+ +.++||.......+ -++..+..+|++++|.|+-
T Consensus 156 ~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~ 235 (361)
T KOG2445|consen 156 HEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI 235 (361)
T ss_pred hhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence 3333 45666778888654322 466666655 48899987765533 2355677899999999953
Q ss_pred ----CEEEEeeeCCCCCceEEEEeCCCC--------------------eeeEEecCCCCcceEEEEEcCCCCEEEEEeCC
Q 001336 527 ----ARLFSCGTNKEGESYLVEWNESEG--------------------AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE 582 (1097)
Q Consensus 527 ----~~l~~~~~~~~~~~~i~~wd~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 582 (1097)
..|++++.|| |++|.+... +.+..+..|.. .|..+.|+-.|..|.+.|.|
T Consensus 236 Gr~y~~lAvA~kDg-----v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGdD 309 (361)
T KOG2445|consen 236 GRSYHLLAVATKDG-----VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGDD 309 (361)
T ss_pred CCceeeEEEeecCc-----EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCCC
Confidence 3577776543 899988731 23445566665 89999999999999999999
Q ss_pred CcEEEEECCC---CceEEEEec
Q 001336 583 FMIKFWDMDN---VNLLASIDA 601 (1097)
Q Consensus 583 g~i~iwd~~~---~~~~~~~~~ 601 (1097)
|.|++|...- -++...+..
T Consensus 310 G~VRLWkany~n~~kC~sv~~~ 331 (361)
T KOG2445|consen 310 GCVRLWKANYNNLWKCTSVLKA 331 (361)
T ss_pred ceeeehhhhhhhhheeeeEEec
Confidence 9999997653 234444443
No 159
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=4.1e-19 Score=174.68 Aligned_cols=299 Identities=14% Similarity=0.200 Sum_probs=205.1
Q ss_pred cCccceEEEEEcc----CCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEE
Q 001336 737 LTAMRVSRLIYTN----SGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCF 812 (1097)
Q Consensus 737 ~~~~~i~~l~~sp----dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l 812 (1097)
.|..+|..++|.+ +...+++......+.+|.....- .+ .+++. .....|......+
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~-----------~i--------r~lq~-y~D~d~~Esfytc 95 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG-----------GI--------RLLQS-YADEDHDESFYTC 95 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc-----------ce--------eeeee-ccCCCCCcceEEE
Confidence 4778899999884 33344444445578888765310 00 11111 1111266677778
Q ss_pred EEccC----CCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEe-
Q 001336 813 ALSKN----DSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL- 886 (1097)
Q Consensus 813 ~~s~d----g~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l- 886 (1097)
+|+-| .-++|.++ -|.|+|.|..++++...+.+|...|+.+.+.|...+++++++.|.+|++|++.+..++..+
T Consensus 96 sw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 96 SWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred EEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence 88744 34677776 7999999999999999999999999999999977899999999999999999999998876
Q ss_pred --cccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceee-------------EeecCCC-------CCCccCCe
Q 001336 887 --KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKF-------------LTIPNGR-------TASALADT 944 (1097)
Q Consensus 887 --~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~-------------~~~~~~~-------~~~~~~v~ 944 (1097)
.+|.+.|.++.|+.+|.+++++|.|.+|++|++...+...... +..+..+ ..+...|.
T Consensus 176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 5699999999999999999999999999999998543221100 0000011 11112233
Q ss_pred EEEEcCCCcEEEE-EeCCeEEEEeC-CCcce-------------eeeeeccCCCCCEEEE--EEecCCCEEEEEecCCeE
Q 001336 945 RVQFHLDQTHLLA-VHETQIAIYEA-PKLEC-------------LKQFVPREASGPITHA--TYSCDSQSIYVAFEEGSV 1007 (1097)
Q Consensus 945 ~l~~s~dg~~l~~-~~d~~v~vwd~-~~~~~-------------~~~~~~~~h~~~v~~v--~~s~dg~~l~s~s~Dg~v 1007 (1097)
++.|- |.++++ +.++.|..|.. +-++. +..+.. ....|+-+ +|.+-+++||.|.+.|.|
T Consensus 256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~--~~c~iWfirf~~d~~~~~la~gnq~g~v 331 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY--PMCDIWFIRFAFDPWQKMLALGNQSGKV 331 (385)
T ss_pred HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEecc--CccceEEEEEeecHHHHHHhhccCCCcE
Confidence 33332 456777 78899999987 22222 122221 13345544 455677889999999999
Q ss_pred EEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecC
Q 001336 1008 GVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1065 (1097)
Q Consensus 1008 ~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~ 1065 (1097)
.+||+++.+....-. ...+--...|.-. +|+- |+.+|+..++|++|.-||.-
T Consensus 332 ~vwdL~~~ep~~~tt---l~~s~~~~tVRQ~--sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 332 YVWDLDNNEPPKCTT---LTHSKSGSTVRQT--SFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEECCCCCCccCce---EEeccccceeeee--eecc-cCcEEEEEeCCCcEEEEEee
Confidence 999999877631111 1111122445544 5655 89999999999999999853
No 160
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=5.8e-19 Score=176.63 Aligned_cols=271 Identities=17% Similarity=0.274 Sum_probs=192.3
Q ss_pred CceEEEEeecCCCeeEEEEccCC-CeEEEEEeCCCeEEEEEcCCCcee-eeeeeeEeeccccCccccccccCCCCCCeEE
Q 001336 309 PKTVVMTLNQGSAVKSMDFHPVQ-QILLVVGTNMGDVMLWEVGSRERI-AVKSFKVWELGACSMPLQASLSSDYTASVNR 386 (1097)
Q Consensus 309 ~~~~~~~~~h~~~V~~v~fspdg-~~lla~gs~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 386 (1097)
|......+.|.+.++.+.-++-| ..++|+=+..|.|.||++...-.. ....+.+-+ ....+...+.+|...=..
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence 34444556688888888888875 445666677899999998542110 000000000 111122247889999999
Q ss_pred EEEcc-CCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC---ce
Q 001336 387 VMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG---TK 462 (1097)
Q Consensus 387 v~~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~---~~ 462 (1097)
++||| ....|++|..-+.|++|...+|.-..-...+.+|...|..++|||..+. +|+|||-||+|+|||++.+ .+
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 99999 3345888888889999999987644434457789999999999998877 8999999999999999988 34
Q ss_pred eEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceE
Q 001336 463 QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL 542 (1097)
Q Consensus 463 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 542 (1097)
+.+ +.|.+.|+.|.|+... .+|++|+.||+++|||++..+.
T Consensus 296 ~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~------------------------------------ 336 (440)
T KOG0302|consen 296 VST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKS------------------------------------ 336 (440)
T ss_pred eEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccC------------------------------------
Confidence 444 8899999999985443 5999999999999999985211
Q ss_pred EEEeCCCCeeeEEecCCCCcceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce----------------EEEEecCCCC
Q 001336 543 VEWNESEGAVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNL----------------LASIDADGGL 605 (1097)
Q Consensus 543 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~ 605 (1097)
++++..|+.|.. +|+++.|+|.. ..|+++|.|.+|.+||+....- -+.+-.|.+.
T Consensus 337 -------~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQ 408 (440)
T KOG0302|consen 337 -------GQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQ 408 (440)
T ss_pred -------CCcceeEEeccC-CeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecch
Confidence 133444555655 89999999865 5677778999999999853221 1122334445
Q ss_pred CCcceEEEcCC-CCEEEEEECCCcEEEE
Q 001336 606 QASPCIRFNKE-GILLAVSTNDNGIKIL 632 (1097)
Q Consensus 606 ~~v~~v~~s~~-~~~l~s~~~dg~i~iw 632 (1097)
..+..+.|++. ..++++.+.||. .||
T Consensus 409 ke~KevhWH~QiPG~lvsTa~dGf-nVf 435 (440)
T KOG0302|consen 409 KEVKEVHWHRQIPGLLVSTAIDGF-NVF 435 (440)
T ss_pred hHhhhheeccCCCCeEEEecccce-eEE
Confidence 67889999984 357888887873 444
No 161
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=3.3e-19 Score=175.34 Aligned_cols=259 Identities=17% Similarity=0.254 Sum_probs=193.7
Q ss_pred cCCCeeEEEEccC---CCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccC-C
Q 001336 318 QGSAVKSMDFHPV---QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-G 393 (1097)
Q Consensus 318 h~~~V~~v~fspd---g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-~ 393 (1097)
|.+....++|+-| +.-++|+|+.-|.|+|.|+.+++.... +.+|...|+.+.|.|+ -
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~-------------------~~ghG~sINeik~~p~~~ 148 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN-------------------YRGHGGSINEIKFHPDRP 148 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc-------------------eeccCccchhhhcCCCCC
Confidence 6778889999765 455788888999999999999887654 7899999999999995 5
Q ss_pred CEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE---------
Q 001336 394 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY--------- 464 (1097)
Q Consensus 394 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~--------- 464 (1097)
++|++|+.|..|++|++.+..++..+.-+.||.+.|.++.|+++|. +|++++.|.++++|++...+...
T Consensus 149 qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd--~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~ 226 (385)
T KOG1034|consen 149 QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD--RIASCGMDHSLKLWRLNVKEFKNKLELSITYS 226 (385)
T ss_pred cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC--eeeccCCcceEEEEecChhHHhhhhhhhcccC
Confidence 7999999999999999999999988888899999999999999999 89999999999999987432110
Q ss_pred -------------------EeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccC
Q 001336 465 -------------------IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD 525 (1097)
Q Consensus 465 -------------------~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 525 (1097)
+-.-|...|.|+.|.. +++++-+-++.|..|..-..+.... .+. -|+
T Consensus 227 ~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g----d~ilSkscenaI~~w~pgkl~e~~~---------~vk-p~e 292 (385)
T KOG1034|consen 227 PNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG----DFILSKSCENAIVCWKPGKLEESIH---------NVK-PPE 292 (385)
T ss_pred CCCccCcCCccccccccccccccccchHHHHHHHh----hheeecccCceEEEEecchhhhhhh---------ccC-CCc
Confidence 1123666666666632 5788888888888885521111100 000 011
Q ss_pred CCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEE--EEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEec
Q 001336 526 GARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVV--QFDTTKNRFLAAGDEFMIKFWDMDNVNL--LASIDA 601 (1097)
Q Consensus 526 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~ 601 (1097)
+..- .+.-+++... .++.+ +|.|-++.|+.|...|.|++||++..++ ..++..
T Consensus 293 s~~T-----------i~~~~~~~~c------------~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~ 349 (385)
T KOG1034|consen 293 SATT-----------ILGEFDYPMC------------DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTH 349 (385)
T ss_pred ccee-----------eeeEeccCcc------------ceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEe
Confidence 1000 1112222211 34443 5667778999999999999999997665 344444
Q ss_pred CCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001336 602 DGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 634 (1097)
Q Consensus 602 ~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~ 634 (1097)
+.....|...+|+.|+..|+...+|++|.-||.
T Consensus 350 s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 350 SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 555678999999999999999999999999985
No 162
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=9.1e-19 Score=176.20 Aligned_cols=235 Identities=15% Similarity=0.245 Sum_probs=188.8
Q ss_pred ccCCCCCCeEEEEEcc-CCCEEEEEECCCEEEEEEccCCeee----eeeeeeecccCcEEEEEEecCCCcEEEEEEeCCC
Q 001336 376 LSSDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDEL----RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR 450 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~sp-d~~~las~~~dg~i~iwd~~~~~~~----~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~ 450 (1097)
.+.||+++|..++|+| +...||+|+.|.+|.||++..+... .....|.||...|--++|+|...+ .|++++.|+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 4789999999999999 7889999999999999999765432 334568999999999999998887 799999999
Q ss_pred cEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCC-ceEEEEEccCCCEE
Q 001336 451 VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH-SSTMMAYSADGARL 529 (1097)
Q Consensus 451 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l 529 (1097)
+|.+||+.+|+.+.++. |.+.|++++| +.||.++++.+.|+.|||||.++++...+-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sf--n~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSF--NRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEe--ccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999999988 9999999998 66779999999999999999999888877755544 555667888888 7
Q ss_pred EEeeeCCCCCceEEEEeCCCCee---eEEecCCCCcceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce-EEEEecCCC
Q 001336 530 FSCGTNKEGESYLVEWNESEGAV---KRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNL-LASIDADGG 604 (1097)
Q Consensus 530 ~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~ 604 (1097)
++.+.++-.+.++-+||...-+. ...+.. ...|.--.+.++.+.++.+| .|+.|+.|.+....+ ++.+.....
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt--SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDT--SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEecc--CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence 77777888899999999765432 233333 33566667889999888887 899999999987653 344433333
Q ss_pred CCCcceEEEcCCC
Q 001336 605 LQASPCIRFNKEG 617 (1097)
Q Consensus 605 ~~~v~~v~~s~~~ 617 (1097)
..+-..+.|-|..
T Consensus 309 ~epQRG~g~mPKR 321 (472)
T KOG0303|consen 309 KEPQRGMGFMPKR 321 (472)
T ss_pred CCccccccccccc
Confidence 4445667777743
No 163
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=8.9e-16 Score=179.12 Aligned_cols=371 Identities=23% Similarity=0.393 Sum_probs=278.5
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCe-eeeeeeeeeccc-CcEEEEEE-ecCCCcEEEEE-EeCCCcE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD-ELRNHLEIEAHV-GSVNDLAF-SYPNKQLSVVT-CGEDRVI 452 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~-~~~~~~~l~~h~-~~V~~l~~-s~d~~~~~l~s-~s~d~~i 452 (1097)
...|...|.++.|.+++..++.++.|+.+.+|+...+. .+. .+.++. ..+..+.+ ++++.. .++. +..|+.+
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~ 136 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK---SLEGLHDSSVSKLALSSPDGNS-ILLASSSLDGTV 136 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE---EEeccCCCceeeEEEECCCcce-EEeccCCCCccE
Confidence 56799999999999999999999999999999999875 333 355533 36777777 777763 3444 4459999
Q ss_pred EEEECCC-CceeEEeecCCcCeEEEeecccCCccEEEEEcC-CCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEE
Q 001336 453 KVWDAVT-GTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF 530 (1097)
Q Consensus 453 ~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 530 (1097)
.+||... ......+..|...|..++|++ ++..+++++. |+.+++|+.........+..+...+.+++|+|++..++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSP--DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECC--CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEE
Confidence 9999988 788889999999999999854 4467888875 99999999998777777777888999999999998444
Q ss_pred Ee-eeCCCCCceEEEEeCCCCeeeE-EecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-EEEEecCCCCCC
Q 001336 531 SC-GTNKEGESYLVEWNESEGAVKR-TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL-LASIDADGGLQA 607 (1097)
Q Consensus 531 ~~-~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~ 607 (1097)
.+ +. +..|.+||...+.... .+.+|.. .. ...|++++..+++++.|+.+++|+...... +..+. ++...
T Consensus 215 ~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~ 286 (466)
T COG2319 215 ASGSS----DGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS--GHSSS 286 (466)
T ss_pred EEecC----CCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEe--cCCcc
Confidence 43 43 4468899998888877 6787776 33 338999998999999999999999987665 44443 44678
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCcccccccccccccccc
Q 001336 608 SPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAA 687 (1097)
Q Consensus 608 v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1097)
+.++.|+|++..+++++.|+.+.+|+..+.. ......
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~------------------------------------------ 323 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGK-LLSSLT------------------------------------------ 323 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCc-eEEEee------------------------------------------
Confidence 9999999988888889999999999876652 111110
Q ss_pred ccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeee-ccCcEEEEe
Q 001336 688 AMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILAL-ASNAVHKLW 766 (1097)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~-~~dg~i~vw 766 (1097)
...|...+..+.+.+++..++.+ ..|+.+.+|
T Consensus 324 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 356 (466)
T COG2319 324 -----------------------------------------------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW 356 (466)
T ss_pred -----------------------------------------------ecccCCceEEEEECCCCCEEEEeecCCCcEEee
Confidence 00134457777773332455555 567888888
Q ss_pred ccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEE-Ee-CCeEEEEEcCCCceeEEeC
Q 001336 767 KWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMS-AS-GGKISLFNMMTFKTMTTFM 844 (1097)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~-~s-dg~i~iwd~~~~~~~~~~~ 844 (1097)
++... .... ... ....+..+.+++ ...+.. +. ++.+.+|+...........
T Consensus 357 ~~~~~----------------------~~~~-~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (466)
T COG2319 357 DLRTG----------------------KPLK-TLE---GHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409 (466)
T ss_pred ecCCC----------------------ceeE-Eec---CCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeecc
Confidence 76531 1000 010 122278889988 544444 34 7999999998888777766
Q ss_pred CCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEccc
Q 001336 845 PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV 879 (1097)
Q Consensus 845 ~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~ 879 (1097)
.+...+....+++ ++..++.++.++.+++|+..+
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 410 GHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCCcEEEEEECC-CCcEEEEecCCCcEEEEeccC
Confidence 4447899999999 888999999999999999887
No 164
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.3e-18 Score=179.68 Aligned_cols=277 Identities=10% Similarity=0.142 Sum_probs=206.6
Q ss_pred CeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCC-EEEEEECCCEEEEEEccCCee-eeee
Q 001336 342 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGDE-LRNH 419 (1097)
Q Consensus 342 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~-~las~~~dg~i~iwd~~~~~~-~~~~ 419 (1097)
..++|||+..-+..... +.....-.|.++.|+.... .+|+.+.|..|++|.-..... +...
T Consensus 12 d~~kl~D~s~~~~~~~~-----------------~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~ 74 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEY-----------------VHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRV 74 (673)
T ss_pred CceEEeecccccCcccc-----------------ccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCcccee
Confidence 45999999765443210 0111223499999998764 234446677899997543311 2222
Q ss_pred eeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEE
Q 001336 420 LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499 (1097)
Q Consensus 420 ~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 499 (1097)
..+.+. .-.|++...... ++++|+..+.|+|||++...+.+.+++|...|+++.+.. ...+|++++..|.|.+-
T Consensus 75 ~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs~gGdiiih 148 (673)
T KOG4378|consen 75 RKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN--TDEYIASVSDGGDIIIH 148 (673)
T ss_pred eccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC--CcceeEEeccCCcEEEE
Confidence 123332 223444333345 899999999999999998888889999999999999854 44899999999999999
Q ss_pred EcCCCCceeeecCCC-CceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCC-CEEE
Q 001336 500 LYDNLGSRVDYDAPG-HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK-NRFL 577 (1097)
Q Consensus 500 d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~ 577 (1097)
.+.++.....+.... ..++-+.|+|..+.++....+ ++.|.+||......+..+...+..+...+||+|.. ..|+
T Consensus 149 ~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v 225 (673)
T KOG4378|consen 149 GTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV 225 (673)
T ss_pred ecccCccccceecCCCCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE
Confidence 999887777776663 466789999998887766543 55899999998888887766666688999999976 5677
Q ss_pred EEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEeccc
Q 001336 578 AAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESR 647 (1097)
Q Consensus 578 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 647 (1097)
+.|.|..|.+||....+....+.. ..+...++|.++|.+|+.|...|.|..||+......+..+..|
T Consensus 226 sVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah 292 (673)
T KOG4378|consen 226 SVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH 292 (673)
T ss_pred EecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec
Confidence 889999999999998877777754 3467899999999999999999999999998775555555443
No 165
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=3.9e-19 Score=177.88 Aligned_cols=175 Identities=21% Similarity=0.376 Sum_probs=146.1
Q ss_pred CceEEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEE
Q 001336 309 PKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 387 (1097)
Q Consensus 309 ~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 387 (1097)
....+.+++ |+..=++++|||--.--|++|..-+.|++|...+|.-.... .-+.+|+..|-.+
T Consensus 200 ~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~----------------~Pf~gH~~SVEDL 263 (440)
T KOG0302|consen 200 EFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQ----------------RPFTGHTKSVEDL 263 (440)
T ss_pred ccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecC----------------ccccccccchhhh
Confidence 456778888 99999999999943323578888899999999987643321 1267899999999
Q ss_pred EEccC-CCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECC---CCcee
Q 001336 388 MWSPD-GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV---TGTKQ 463 (1097)
Q Consensus 388 ~~spd-~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~---~~~~~ 463 (1097)
+|||. ...+|+|+.||+|+|||++.+.....+. .+.|.+.|+.+.|+.+-. +|++|+.||+++|||++ .++++
T Consensus 264 qWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pV 340 (440)
T KOG0302|consen 264 QWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQPV 340 (440)
T ss_pred ccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCcc
Confidence 99994 5689999999999999999985433332 478999999999998887 89999999999999997 46788
Q ss_pred EEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCC
Q 001336 464 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 503 (1097)
Q Consensus 464 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 503 (1097)
.+|+-|..+|+++.|+|..+ ..|++++.|.+|.+||+..
T Consensus 341 A~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 341 ATFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeec
Confidence 99999999999999998776 5788889999999999863
No 166
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=2.1e-18 Score=178.04 Aligned_cols=215 Identities=18% Similarity=0.282 Sum_probs=170.0
Q ss_pred EEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEE
Q 001336 745 LIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSA 824 (1097)
Q Consensus 745 l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~ 824 (1097)
++......++++++..+.|+|||+.. +++...+.+ |...|+++.+.-...+||++
T Consensus 85 v~~~s~S~y~~sgG~~~~Vkiwdl~~-----------------------kl~hr~lkd--h~stvt~v~YN~~DeyiAsv 139 (673)
T KOG4378|consen 85 VACASQSLYEISGGQSGCVKIWDLRA-----------------------KLIHRFLKD--HQSTVTYVDYNNTDEYIASV 139 (673)
T ss_pred HhhhhcceeeeccCcCceeeehhhHH-----------------------HHHhhhccC--CcceeEEEEecCCcceeEEe
Confidence 33333448899999999999997652 333334555 99999999999999999999
Q ss_pred e-CCeEEEEEcCCCceeEEeCCCCC-CeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEE-EecccccCeEEEEEecC
Q 001336 825 S-GGKISLFNMMTFKTMTTFMPPPP-AATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKT-KLKGHQKRITGLAFSNT 901 (1097)
Q Consensus 825 s-dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~-~l~~h~~~V~~l~~s~d 901 (1097)
+ .|.|.|..+.++....+|....+ .|+-+.|+|....+|.+++.+|.|.+||+.....+. -...|..+...|+|+|.
T Consensus 140 s~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsps 219 (673)
T KOG4378|consen 140 SDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPS 219 (673)
T ss_pred ccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCC
Confidence 9 68899999999888778875534 467899999666678899999999999998766554 45679999999999996
Q ss_pred C-CEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEEEEeCCCcce-eeeee
Q 001336 902 L-NVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLEC-LKQFV 978 (1097)
Q Consensus 902 g-~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~vwd~~~~~~-~~~~~ 978 (1097)
. .+|++.|.|..|.+||+...+... .+. .. .+...++|+++|.+|+++ ..|.|..||+...+. +....
T Consensus 220 ne~l~vsVG~Dkki~~yD~~s~~s~~--~l~--y~-----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~s 290 (673)
T KOG4378|consen 220 NEALLVSVGYDKKINIYDIRSQASTD--RLT--YS-----HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRS 290 (673)
T ss_pred ccceEEEecccceEEEeecccccccc--eee--ec-----CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEee
Confidence 5 578899999999999998744222 111 11 347889999999999996 789999999986554 34443
Q ss_pred ccCCCCCEEEEEEecCC
Q 001336 979 PREASGPITHATYSCDS 995 (1097)
Q Consensus 979 ~~~h~~~v~~v~~s~dg 995 (1097)
.|...|++++|-+.-
T Consensus 291 --ah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 291 --AHDASVTRVAFQPSP 305 (673)
T ss_pred --ecccceeEEEeeecc
Confidence 788999999997754
No 167
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=2.4e-17 Score=171.92 Aligned_cols=492 Identities=12% Similarity=0.138 Sum_probs=295.8
Q ss_pred CCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEE-EEEe-----cCCCcEEEEEEeCCCcE
Q 001336 379 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVND-LAFS-----YPNKQLSVVTCGEDRVI 452 (1097)
Q Consensus 379 ~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~-l~~s-----~d~~~~~l~s~s~d~~i 452 (1097)
.|...|.|+.|+.+...+.+++.+..+.-||+.+.. ..... + ...-|.. +-.- ..+....++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~~-~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVAK-L--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhhh-C--CcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 467778899999888877777666555555655432 21110 1 1111111 1010 11111268899999999
Q ss_pred EEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEe
Q 001336 453 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC 532 (1097)
Q Consensus 453 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 532 (1097)
.+.+ +.++.-+....|.+.+.+-.| +++|.-|+++++||.|++|.-. +-.+..+......|+|++|.|+.+.++.+
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW--~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRW--SPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhccc--CCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 9998 788888889999999999988 5566779999999999999743 33334444456689999999999988887
Q ss_pred eeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEE
Q 001336 533 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR 612 (1097)
Q Consensus 533 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 612 (1097)
..+ .+.+-.+.....+...+.|.+ .|.++.|++..+.+++||+|-..+|||.. |..+..-..| ..+|++++
T Consensus 164 ~g~-----h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~--ey~ITSva 234 (737)
T KOG1524|consen 164 QGG-----HISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAE--EYAITSVA 234 (737)
T ss_pred cCC-----eEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeeccc-CcccccCChh--ccceeeee
Confidence 532 477777777777778888887 89999999999999999999999999976 4555555544 66899999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccC
Q 001336 613 FNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM 692 (1097)
Q Consensus 613 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1097)
|+|+ ..++.++.. ++|+ +.
T Consensus 235 ~npd-~~~~v~S~n-t~R~---~~-------------------------------------------------------- 253 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-TARF---SS-------------------------------------------------------- 253 (737)
T ss_pred eccc-cceeeeeee-eeee---cC--------------------------------------------------------
Confidence 9999 566655532 3331 00
Q ss_pred CCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEE-eccCCC
Q 001336 693 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKL-WKWPRN 771 (1097)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~v-w~~~~~ 771 (1097)
...+.|..++||+||..++.|+..|.+.+ +-+++.
T Consensus 254 --------------------------------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~ 289 (737)
T KOG1524|consen 254 --------------------------------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQ 289 (737)
T ss_pred --------------------------------------------CCccceEEEEEcCCCceeeccccCceEEEeeeehhh
Confidence 13467889999999999999999887765 333322
Q ss_pred CCCccCccc--cccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEcCCCceeEEeCCCCCC
Q 001336 772 ERNSTGKAT--TNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPA 849 (1097)
Q Consensus 772 ~~~~~~~~~--~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~ 849 (1097)
-...+++.. ....+.+-|+.++..-..+ ....|...+ -.-.+|+++....+++|.-........+.+....
T Consensus 290 l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE-----~p~rv~k~s--L~Y~hLvvaTs~qvyiys~knwntpiiidgre~t 362 (737)
T KOG1524|consen 290 LVSGNLKATSKSRKSITVRDVATGVQDILE-----FPQRVVKFS--LGYGHLVVATSLQVYIYSEKNWNTPIIIDGREDT 362 (737)
T ss_pred hhhccceeEeeccceEEeehhhhhHHHHhh-----Cccceeeee--eceeEEEEEeccEEEEEecCCccCcEEEeccccc
Confidence 112222211 1223455566655543322 233444433 3456777777888999988776666566554444
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEec--ccc-cCe--EEEEEecCCCEEEEE--eCCCcEEEEEc-CC
Q 001336 850 ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK--GHQ-KRI--TGLAFSNTLNVLVSS--GADSQLCVWST-DG 921 (1097)
Q Consensus 850 i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~--~h~-~~V--~~l~~s~dg~~l~s~--~~Dg~i~iwd~-~~ 921 (1097)
+.-+.-+. ..+++ ...-++.+|... |+.....+ +.. ... ..+... ...|+.- .....+.+||. .+
T Consensus 363 r~lieq~e--k~fli--~dgsSi~lytye-gR~~~np~~Pg~~~dlL~~rtlsLa--ndtLaird~ad~kvlhlFd~ist 435 (737)
T KOG1524|consen 363 RNLIEQGE--KYFLI--LDGSSIWLYTYE-GRLHLNPRYPGSQIDLLTWRTLSLA--NDTLAIRDNADPKVLHLFDLIST 435 (737)
T ss_pred hhHhhhhh--hheEE--ecCcEEEEEEec-CceecCCCCCCcccccccceeeecc--cceEEeecCCCCeeEEeccCCCC
Confidence 43333221 12222 223456666654 33222221 110 001 122222 2234432 22345778887 55
Q ss_pred CcccceeeEeecCCC-CCCccCCeEEEEcC----CCcEEEE-EeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCC
Q 001336 922 WEKQASKFLTIPNGR-TASALADTRVQFHL----DQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDS 995 (1097)
Q Consensus 922 ~~~~~~~~~~~~~~~-~~~~~~v~~l~~s~----dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg 995 (1097)
++.+.- ++ ..+...+..++... +.+.++. -..+.++|=.+.+......+. .-..-|..++|+..
T Consensus 436 gk~qgD-------gk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~--KiGTmVhtLawndt- 505 (737)
T KOG1524|consen 436 GKRQGD-------GKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIY--KIGTMVHTLAWNDT- 505 (737)
T ss_pred CcccCC-------ccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhh--hhhhhhhhhhhccc-
Confidence 553221 11 00112233333322 2222222 344555555444332222221 11356788899844
Q ss_pred CEEEEEecCCeEEEEeCCCCc
Q 001336 996 QSIYVAFEEGSVGVLTASTLR 1016 (1097)
Q Consensus 996 ~~l~s~s~Dg~v~vwd~~~~~ 1016 (1097)
.-+++|-.|+.+.||-..+.-
T Consensus 506 tNiLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 506 TNILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred cceeeeeccceEEEEEcCCcc
Confidence 456778899999999987643
No 168
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=1.6e-17 Score=168.31 Aligned_cols=319 Identities=16% Similarity=0.153 Sum_probs=221.8
Q ss_pred ccceEEEEEccCCc-eeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccC
Q 001336 739 AMRVSRLIYTNSGL-AILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 817 (1097)
Q Consensus 739 ~~~i~~l~~spdg~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 817 (1097)
..++.++.|.+++. .+++++.|..|++|.+........+. .......+.. |...|.++.|+|+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~--------------~V~y~s~Ls~--H~~aVN~vRf~p~ 76 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDM--------------KVEYLSSLSR--HTRAVNVVRFSPD 76 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCce--------------eEEEeecccC--CcceeEEEEEcCC
Confidence 46789999999877 99999999999999887543211100 0111223444 9999999999999
Q ss_pred CCEEEEEe-CCeEEEEEcC--------C--------CceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccc
Q 001336 818 DSYVMSAS-GGKISLFNMM--------T--------FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD 880 (1097)
Q Consensus 818 g~~la~~s-dg~i~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~ 880 (1097)
|.+||+|+ +|.|.+|-.. + +...+.+.+|...|..++|+| ++.++++++-|..+++||+..|
T Consensus 77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccc
Confidence 99999999 6899999764 2 345566788999999999999 9999999999999999999999
Q ss_pred eEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceee---EeecCCCC------------CCccCCeE
Q 001336 881 EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKF---LTIPNGRT------------ASALADTR 945 (1097)
Q Consensus 881 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~---~~~~~~~~------------~~~~~v~~ 945 (1097)
+....+.+|..-+..++|.|-++++++-+.|...+.+.+...+...... +....+.. ....-...
T Consensus 156 ~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrR 235 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRR 235 (434)
T ss_pred eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhh
Confidence 9999999999999999999999999999999877777665533221111 11111110 00122366
Q ss_pred EEEcCCCcEEEE-E----eCCe-----EEEEeCCCcce-eeeeeccCCCCCEEEEEEec------------------CCC
Q 001336 946 VQFHLDQTHLLA-V----HETQ-----IAIYEAPKLEC-LKQFVPREASGPITHATYSC------------------DSQ 996 (1097)
Q Consensus 946 l~~s~dg~~l~~-~----~d~~-----v~vwd~~~~~~-~~~~~~~~h~~~v~~v~~s~------------------dg~ 996 (1097)
++|+|||.+|++ + ..+. .++|+-...+. ...+. +-..++..+.|+| -+-
T Consensus 236 lsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp--~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrl 313 (434)
T KOG1009|consen 236 LSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP--SPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRL 313 (434)
T ss_pred cccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecC--CCCcceEEEEeeeeEEEeccccccccccccccce
Confidence 899999999987 2 2333 35555443221 22222 2344555555554 122
Q ss_pred EEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCCCcc-cCCCC
Q 001336 997 SIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGR-WGTSP 1075 (1097)
Q Consensus 997 ~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~~~~-~~~~~ 1075 (1097)
.+|.++ .+.|.|||.++...++...-- |=..++.+ +|++ ||..|+..|.||-.-+-.++..|-. ....+
T Consensus 314 vfaiAt-~~svyvydtq~~~P~~~v~ni------hy~~iTDi--aws~-dg~~l~vSS~DGyCS~vtfe~~elg~~~~~~ 383 (434)
T KOG1009|consen 314 VFAIAT-KNSVYVYDTQTLEPLAVVDNI------HYSAITDI--AWSD-DGSVLLVSSTDGFCSLVTFEPWELGIRLKEI 383 (434)
T ss_pred EEEEee-cceEEEeccccccceEEEeee------eeeeecce--eecC-CCcEEEEeccCCceEEEEEcchhccceeccc
Confidence 344444 568999999998888776622 44556665 8888 7999999999998777777655543 33344
Q ss_pred CCCCCCCCCCC
Q 001336 1076 PNENGAGPSTT 1086 (1097)
Q Consensus 1076 ~~~~~~~~~~~ 1086 (1097)
++..-..++++
T Consensus 384 sv~~~~~~~~~ 394 (434)
T KOG1009|consen 384 SVLSKRLDSTE 394 (434)
T ss_pred ccccccCCChh
Confidence 44444444444
No 169
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.80 E-value=9.6e-18 Score=172.40 Aligned_cols=312 Identities=11% Similarity=0.103 Sum_probs=222.9
Q ss_pred ECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCC----CceeeecCCCCceEEEEEccCC-CEEE
Q 001336 456 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL----GSRVDYDAPGHSSTMMAYSADG-ARLF 530 (1097)
Q Consensus 456 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~~-~~l~ 530 (1097)
|+.+-......+-+.++|++++|+|..+..++++|+.-|.|-+||+.+. .....+..|..+|.++.|+|.. ..++
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence 3344445556667889999999999998889999999999999999532 2345567788899999999955 4667
Q ss_pred EeeeCCCCCceEEEEeCCCCeeeEEecCC-CCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-EEEEecCCCCCCc
Q 001336 531 SCGTNKEGESYLVEWNESEGAVKRTYHGL-GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL-LASIDADGGLQAS 608 (1097)
Q Consensus 531 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v 608 (1097)
+.+.|| +|++-|++.......+... ....+..+.|+.+...++.+..=|.+.+||++++.. ...+..| ...|
T Consensus 252 ssSyDG----tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh--~kKI 325 (498)
T KOG4328|consen 252 SSSYDG----TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLH--KKKI 325 (498)
T ss_pred eeccCc----eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhh--hccc
Confidence 766644 6999999877543333331 122566778888888888888778999999997654 5555555 5589
Q ss_pred ceEEEcC-CCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCcccccccccccccccc
Q 001336 609 PCIRFNK-EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAA 687 (1097)
Q Consensus 609 ~~v~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1097)
+.++++| ...+||+++.|++.+|||+..-. +....
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~-------~K~sp------------------------------------- 361 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLR-------GKASP------------------------------------- 361 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhc-------CCCCc-------------------------------------
Confidence 9999999 55789999999999999986531 00000
Q ss_pred ccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEec
Q 001336 688 AMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 767 (1097)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~ 767 (1097)
+ +.. ..|...|.+..|||+|-.|++.+.|..|+|||
T Consensus 362 -----------------~----------lst-----------------~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 362 -----------------F----------LST-----------------LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred -----------------c----------eec-----------------ccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence 0 001 12888999999999998899999999999998
Q ss_pred cCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCC
Q 001336 768 WPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPP 846 (1097)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~ 846 (1097)
.. .+.-|+...+.+......+ .|- ..--.+|.||..++++|. -..|-|+|-..++.+..+...
T Consensus 398 ss--------------~~sa~~~p~~~I~Hn~~t~-Rwl-T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P 461 (498)
T KOG4328|consen 398 SS--------------CISAKDEPLGTIPHNNRTG-RWL-TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP 461 (498)
T ss_pred cc--------------cccccCCccceeeccCccc-ccc-cchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc
Confidence 53 0111233333333221211 011 223457999999999998 677999999998888887554
Q ss_pred CC-CeEE-EEEeCCCCC-EEEEEECCCcEEEEEcc
Q 001336 847 PP-AATF-LAFHPQDNN-IIAIGMEDSSIQIYNVR 878 (1097)
Q Consensus 847 ~~-~i~~-l~~sp~~~~-~la~g~~dg~v~vwd~~ 878 (1097)
.. .|.+ ..|+| -+. ++|-++..|.|+||.-+
T Consensus 462 ~~~tI~~vn~~HP-~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 462 ESSTIPSVNEFHP-MRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccccccceeecc-cccceeccCCccceEEEEecC
Confidence 43 4555 48999 555 66666678889988644
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=1.4e-17 Score=163.44 Aligned_cols=227 Identities=14% Similarity=0.157 Sum_probs=170.0
Q ss_pred ccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCC---CeeEEEEccCCCEEEEE
Q 001336 748 TNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPED---AVPCFALSKNDSYVMSA 824 (1097)
Q Consensus 748 spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~---~v~~l~~s~dg~~la~~ 824 (1097)
-|+..++++.+.+.-|.+||.-++ ++... +.+..|-. ...+++|+|||..|++|
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG----------------------~lraS-y~~ydh~de~taAhsL~Fs~DGeqlfaG 176 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTG----------------------KLRAS-YRAYDHQDEYTAAHSLQFSPDGEQLFAG 176 (406)
T ss_pred CCccceeeeccccCceeeeecccc----------------------ccccc-hhhhhhHHhhhhheeEEecCCCCeEeec
Confidence 367788888999999998876543 22111 11111322 34579999999999999
Q ss_pred eCCeEEEEEc-CCCceeE---Ee----CCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEE
Q 001336 825 SGGKISLFNM-MTFKTMT---TF----MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGL 896 (1097)
Q Consensus 825 sdg~i~iwd~-~~~~~~~---~~----~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l 896 (1097)
....|+++|+ ..|+... ++ .+..+-|.|++|+|.+.+.+|+|+....+-||.-..+..+..+-+|.+.|+.+
T Consensus 177 ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL 256 (406)
T KOG2919|consen 177 YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHL 256 (406)
T ss_pred ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeE
Confidence 9999999999 4443211 11 12356689999999888899999999999999988899999999999999999
Q ss_pred EEecCCCEEEEEeC-CCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEE--EcCCCcEEEEE-eCCeEEEEeCCC-c
Q 001336 897 AFSNTLNVLVSSGA-DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQ--FHLDQTHLLAV-HETQIAIYEAPK-L 971 (1097)
Q Consensus 897 ~~s~dg~~l~s~~~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~--~s~dg~~l~~~-~d~~v~vwd~~~-~ 971 (1097)
.|.+||+.|++|+. |-.|..||+...+.. +-....|.. ..-..+. ..|++++|+++ .+|.|++||+++ +
T Consensus 257 ~~~edGn~lfsGaRk~dkIl~WDiR~~~~p----v~~L~rhv~--~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 257 QWCEDGNKLFSGARKDDKILCWDIRYSRDP----VYALERHVG--DTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred EeccCcCeecccccCCCeEEEEeehhccch----hhhhhhhcc--CccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence 99999999999886 678999999874422 111222221 1233444 46899999996 899999999998 5
Q ss_pred ceeeeeeccCCCCCEEEEEEecCCCEEEEEecCC
Q 001336 972 ECLKQFVPREASGPITHATYSCDSQSIYVAFEEG 1005 (1097)
Q Consensus 972 ~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg 1005 (1097)
..+..+. .|+..+..+++.|--.++++++-..
T Consensus 331 n~~sv~~--~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 331 NEVSVTG--NYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred Ccccccc--cccccccceecCcccceeeeccCce
Confidence 5444443 6789999999999988888887543
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=1.3e-17 Score=163.66 Aligned_cols=288 Identities=15% Similarity=0.202 Sum_probs=206.6
Q ss_pred eeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEc-------cCCC
Q 001336 322 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS-------PDGT 394 (1097)
Q Consensus 322 V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-------pd~~ 394 (1097)
...+.|||||..| .+-+.|..+.+|++...-.-...... ...+....+-......|...+|- |+..
T Consensus 52 ~kgckWSPDGSci-L~~sedn~l~~~nlP~dlys~~~~~~------~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKWSPDGSCI-LSLSEDNCLNCWNLPFDLYSKKADGP------LNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred hccceeCCCCceE-EeecccCeeeEEecChhhcccCCCCc------cccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 4478999999977 46688999999997432110000000 00000000111223467777774 6788
Q ss_pred EEEEEECCCEEEEEEccCCeeeeeeeeeecccCc---EEEEEEecCCCcEEEEEEeCCCcEEEEEC-CCCcee--EEe--
Q 001336 395 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGS---VNDLAFSYPNKQLSVVTCGEDRVIKVWDA-VTGTKQ--YIF-- 466 (1097)
Q Consensus 395 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~---V~~l~~s~d~~~~~l~s~s~d~~i~iwd~-~~~~~~--~~~-- 466 (1097)
++|+.+.+.-|++||.-+|+.... ...-.|... -.+++|+|||.+ | -++..+.|+++|+ +.|+.- +..
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraS-y~~ydh~de~taAhsL~Fs~DGeq--l-faGykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRAS-YRAYDHQDEYTAAHSLQFSPDGEQ--L-FAGYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeeccccccccc-hhhhhhHHhhhhheeEEecCCCCe--E-eecccceEEEeeccCCCCCCcchhhhh
Confidence 999999999999999999985432 223335443 468999999993 4 4556789999998 455422 211
Q ss_pred ---ecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEE
Q 001336 467 ---EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 543 (1097)
Q Consensus 467 ---~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 543 (1097)
.+..+-|.+++|+|... ..++.++...++-||.-...+....+-.+.+.|+.++|.++|+.|.++..- +..|.
T Consensus 201 ~~k~gq~giisc~a~sP~~~-~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk---~dkIl 276 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDS-KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK---DDKIL 276 (406)
T ss_pred cccccccceeeeeeccCCCC-cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC---CCeEE
Confidence 13367788889987653 589999999999999989888888888999999999999999999998753 44799
Q ss_pred EEeCCCC-eeeEEecCCCCcceEE--EEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEecCCCCCCcceEEEcCCCCE
Q 001336 544 EWNESEG-AVKRTYHGLGKRSVGV--VQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQASPCIRFNKEGIL 619 (1097)
Q Consensus 544 ~wd~~~~-~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~ 619 (1097)
.||++.- .++..+..|....-.. ....|++++|++|+.||.|++||+.+ |..+..+..+ ...++.++++|--.+
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~--sd~vNgvslnP~mpi 354 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY--SDTVNGVSLNPIMPI 354 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc--cccccceecCcccce
Confidence 9999864 4555665554322223 35578899999999999999999998 7767777655 678999999999888
Q ss_pred EEEEECC
Q 001336 620 LAVSTND 626 (1097)
Q Consensus 620 l~s~~~d 626 (1097)
+|+++..
T Consensus 355 latssGq 361 (406)
T KOG2919|consen 355 LATSSGQ 361 (406)
T ss_pred eeeccCc
Confidence 8887654
No 172
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=5.8e-18 Score=173.52 Aligned_cols=265 Identities=12% Similarity=0.178 Sum_probs=188.6
Q ss_pred CCeeEEEEccC-------CCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCc------cccccccCCCCCCeEE
Q 001336 320 SAVKSMDFHPV-------QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSM------PLQASLSSDYTASVNR 386 (1097)
Q Consensus 320 ~~V~~v~fspd-------g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~h~~~V~~ 386 (1097)
....|++|... |+ ++|.|+.|..|.|||+.--..+. ....++.... ........+|++.|..
T Consensus 174 afPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~ 248 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLA 248 (463)
T ss_pred CcchhhhhhhcCCCCCCCcc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHH
Confidence 34467776433 45 57999999999999986332211 0001110000 0011124589999999
Q ss_pred EEEccC-CCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001336 387 VMWSPD-GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI 465 (1097)
Q Consensus 387 v~~spd-~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 465 (1097)
++|+.+ ...||+||.|.+|++||+.+|++.. ++..|.+.|.+++|+|.... +|++|+.|++|.+.|.+.......
T Consensus 249 Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~ 324 (463)
T KOG0270|consen 249 LSWNRNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGK 324 (463)
T ss_pred HHhccccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCc
Confidence 999984 5689999999999999999998765 46779999999999998776 899999999999999985433332
Q ss_pred eecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCC-CceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEE
Q 001336 466 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 544 (1097)
Q Consensus 466 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 544 (1097)
.-...+.|-.++|.+... ..++++..||+|+-+|++.. ++...+..|..+|.++++++.-..+++.+ ..+..+.+
T Consensus 325 ~wk~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~---s~d~~Vkl 400 (463)
T KOG0270|consen 325 EWKFDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTA---STDKVVKL 400 (463)
T ss_pred eEEeccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeec---cccceEEE
Confidence 223567788899977655 57788899999999999987 67888999999999999998776554442 23568999
Q ss_pred EeCCCCeeeEEecC-CCCcceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEE
Q 001336 545 WNESEGAVKRTYHG-LGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVNLLA 597 (1097)
Q Consensus 545 wd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~ 597 (1097)
|++........... ..-+...|.++.|+-. .++.|+..+.++|||+.+...+.
T Consensus 401 w~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 401 WKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred EeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 99875433211111 0112456667777764 45667788889999998765543
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=2e-17 Score=166.63 Aligned_cols=253 Identities=15% Similarity=0.216 Sum_probs=189.4
Q ss_pred CeEEEEEcc-----CCCEEEEE---ECCCEEEEEEc-cCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEE
Q 001336 383 SVNRVMWSP-----DGTLFGVA---YSKHIVHLYTY-HGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 453 (1097)
Q Consensus 383 ~V~~v~~sp-----d~~~las~---~~dg~i~iwd~-~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 453 (1097)
.|+.++|.. +.++||.. +..|...+--+ ++|+.-.....+.||.++|..++|+|-+.+ .|+|||.|.+|.
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~ 107 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVM 107 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEE
Confidence 455555533 45666653 22223333222 233322333346799999999999997776 799999999999
Q ss_pred EEECCCC-------ceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCC
Q 001336 454 VWDAVTG-------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG 526 (1097)
Q Consensus 454 iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 526 (1097)
||.+..+ +++..+.||...|.-++|++... +.|++++.|++|.+||..+++....+. |..-|.++.|+.||
T Consensus 108 vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 108 VWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred EEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC
Confidence 9998755 34678899999999999998876 789999999999999999999998887 88899999999999
Q ss_pred CEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEe----CCCcEEEEECCCCc-eEEEEec
Q 001336 527 ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG----DEFMIKFWDMDNVN-LLASIDA 601 (1097)
Q Consensus 527 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~-~~~~~~~ 601 (1097)
.++++.+.|+ .|++||.++++.+..-.+|.+..-..+.|-.++. +++.+ .+..+-+||..+-+ ++.....
T Consensus 186 s~l~TtckDK----kvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~el 260 (472)
T KOG0303|consen 186 SLLCTTCKDK----KVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQEL 260 (472)
T ss_pred ceeeeecccc----eeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEe
Confidence 9999998755 6999999999999988888876667778888888 55544 67889999987643 2222222
Q ss_pred CCCCCCcceEEEcCCCCEEEEEE-CCCcEEEEEcCCCceEEEEe
Q 001336 602 DGGLQASPCIRFNKEGILLAVST-NDNGIKILANADGIRLLRTV 644 (1097)
Q Consensus 602 ~~~~~~v~~v~~s~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~ 644 (1097)
.....|.---|.+|..+++.++ .|+.||-|.+.+....+.-+
T Consensus 261 -DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyl 303 (472)
T KOG0303|consen 261 -DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYL 303 (472)
T ss_pred -ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEe
Confidence 2234555666788888776654 69999999998874444333
No 174
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.4e-18 Score=179.79 Aligned_cols=299 Identities=19% Similarity=0.263 Sum_probs=231.2
Q ss_pred EEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEc
Q 001336 312 VVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 390 (1097)
Q Consensus 312 ~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 390 (1097)
+...|. |.+.|..|.|...|. +|++|+.|..|.+|||..+..... ...||...|....|-
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFi 194 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFI 194 (559)
T ss_pred hhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhcc
Confidence 344555 999999999999999 569999999999999998876543 357999999999999
Q ss_pred c--CCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEe--
Q 001336 391 P--DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-- 466 (1097)
Q Consensus 391 p--d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-- 466 (1097)
| +.+.+++++.||.|++=.+...+.+.....+..|.++|.-++.-|+..+ -|.+++.|+.+.-.|++.+.....+
T Consensus 195 P~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~c 273 (559)
T KOG1334|consen 195 PFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVC 273 (559)
T ss_pred CCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeee
Confidence 8 5678999999999999887654445545567889999999999999887 7999999999999999887654333
Q ss_pred -ecCCc---CeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCce------eeec------CCCCceEEEEEccCCCEEE
Q 001336 467 -EGHES---PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR------VDYD------APGHSSTMMAYSADGARLF 530 (1097)
Q Consensus 467 -~~h~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~------~~~~~v~~~~~s~~~~~l~ 530 (1097)
..+.. ..++++..|... ..+++++.|..+++||.+..... ..+. .....|++++|+.++.-|+
T Consensus 274 r~~~~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL 352 (559)
T KOG1334|consen 274 READEKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELL 352 (559)
T ss_pred eccCCccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcccee
Confidence 22333 456777766543 58999999999999997643322 1111 1223799999997776666
Q ss_pred EeeeCCCCCceEEEEeCCC--C----------eeeE-EecCCCCc-ceEEE-EEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001336 531 SCGTNKEGESYLVEWNESE--G----------AVKR-TYHGLGKR-SVGVV-QFDTTKNRFLAAGDEFMIKFWDMDNVNL 595 (1097)
Q Consensus 531 ~~~~~~~~~~~i~~wd~~~--~----------~~~~-~~~~~~~~-~v~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 595 (1097)
+...+ ..|+++.-.. | ..++ .|+||.+. .|..+ .|.|..+++++|++-|.|.||+-.+++.
T Consensus 353 aSYnD----e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei 428 (559)
T KOG1334|consen 353 ASYND----EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI 428 (559)
T ss_pred eeecc----cceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHH
Confidence 55543 3477775332 2 2233 37888652 34455 5688899999999999999999999999
Q ss_pred EEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 596 LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 596 ~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
+..+.+..+ .|+|+.-+|--..||+.+-|..|+||...+.
T Consensus 429 i~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 429 IRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 999987754 8999999999999999999999999986443
No 175
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.3e-16 Score=169.71 Aligned_cols=620 Identities=11% Similarity=0.094 Sum_probs=355.2
Q ss_pred CCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccC-------
Q 001336 320 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD------- 392 (1097)
Q Consensus 320 ~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd------- 392 (1097)
+.-.++.|+|.| |+|-|+. ..|.|-|..+-+.+.. +..|...|+.+.|.|-
T Consensus 16 sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ll 73 (1062)
T KOG1912|consen 16 SNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDLL 73 (1062)
T ss_pred ccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhcc
Confidence 345688999998 5677765 4688889888777654 5678999999999872
Q ss_pred -----CCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEec---CCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001336 393 -----GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY---PNKQLSVVTCGEDRVIKVWDAVTGTKQY 464 (1097)
Q Consensus 393 -----~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~---d~~~~~l~s~s~d~~i~iwd~~~~~~~~ 464 (1097)
.-+||++...|.|.+||...+..+. .+..|..+|..++|-+ +.+. +|+.-....++.+|+..+|+...
T Consensus 74 S~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~W 149 (1062)
T KOG1912|consen 74 SPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKFW 149 (1062)
T ss_pred CccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCceee
Confidence 1267888899999999999876443 3778899999999976 3333 67777778899999999999887
Q ss_pred EeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCC------ceeeecCC-C------------C----------
Q 001336 465 IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG------SRVDYDAP-G------------H---------- 515 (1097)
Q Consensus 465 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~-~------------~---------- 515 (1097)
..........|+.+.|-.. +.+..-+..|.+.+.+.-... ....+... . .
T Consensus 150 k~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~ 228 (1062)
T KOG1912|consen 150 KYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAY 228 (1062)
T ss_pred ccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchh
Confidence 7665556666677655443 344444445666665432111 11111110 0 0
Q ss_pred ---ceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCC--CEEEEEeCCCcEEEEEC
Q 001336 516 ---SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK--NRFLAAGDEFMIKFWDM 590 (1097)
Q Consensus 516 ---~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~ 590 (1097)
-...++|+|.-+.++...... .+.++|++-..++....-..+ .+..+.+-|++ ..|++.-.||.+.+|-.
T Consensus 229 fity~a~faf~p~~rn~lfi~~pr----ellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 229 FITYCAQFAFSPHWRNILFITFPR----ELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred HHHHHHhhhcChhhhceEEEEecc----ceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 011356778666555554432 489999998887777665544 45556666655 67999999999999976
Q ss_pred CCCc----------------eEEEEecCCCCCCcceEEEcCC-CCEEEEEECCCcEEEEEcCCCceEEEEeccccccccc
Q 001336 591 DNVN----------------LLASIDADGGLQASPCIRFNKE-GILLAVSTNDNGIKILANADGIRLLRTVESRTFDASR 653 (1097)
Q Consensus 591 ~~~~----------------~~~~~~~~~~~~~v~~v~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 653 (1097)
+... ....+..-... ........|. ...++.--.+|.+.+|.+.++........+......
T Consensus 304 k~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~- 381 (1062)
T KOG1912|consen 304 KEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVL- 381 (1062)
T ss_pred eccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccc-
Confidence 5421 11111111111 1122233343 445555566788889998865211111100000000
Q ss_pred ccccccccCCcccccc-----cCcccccccc-------cccccccc--ccccCCCCCCCcc--ccCcccccccccccccc
Q 001336 654 VASAAIVKAPAIGTFG-----SANANVGTSL-------GERTAPAA--AMVGMSNDSRNFT--DVKPKIADEAVEKSRIW 717 (1097)
Q Consensus 654 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~w 717 (1097)
..+|.... ......+.++ +.+..|+. +.+.-.+ +...+ ....++.|...|+|.++
T Consensus 382 --------pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p-~~n~~~~~~pLvAvGT~sGTV~vv 452 (1062)
T KOG1912|consen 382 --------PFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDP-GGNTPAGTVPLVAVGTNSGTVDVV 452 (1062)
T ss_pred --------cccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCC-CCCccceeeeeEEeecCCceEEEE
Confidence 00110000 0001122222 12222222 2222222 22222 23456678889999999
Q ss_pred cccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccC--cEEEEeccCCCCCCccCccccccCCcccCCCCCcc
Q 001336 718 KLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN--AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGIL 795 (1097)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 795 (1097)
|+.+..-.... ..|...|.++.|.....++-.+... ..-.+ ....+.+-|+.+|.-
T Consensus 453 dvst~~v~~~f-------svht~~VkgleW~g~sslvSfsys~~n~~sg~---------------vrN~l~vtdLrtGls 510 (1062)
T KOG1912|consen 453 DVSTNAVAASF-------SVHTSLVKGLEWLGNSSLVSFSYSHVNSASGG---------------VRNDLVVTDLRTGLS 510 (1062)
T ss_pred Eecchhhhhhh-------cccccceeeeeeccceeEEEeeeccccccccc---------------eeeeEEEEEcccccc
Confidence 99864432222 3488899999998877755444331 10000 011233446667764
Q ss_pred ccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEe-CC---------------
Q 001336 796 MTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFH-PQ--------------- 858 (1097)
Q Consensus 796 ~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-p~--------------- 858 (1097)
..+.-.....+.+|+.+..|.-|+|++..- +.-+.+||+++..+++.....-.-|+.++|+ |.
T Consensus 511 k~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sm 590 (1062)
T KOG1912|consen 511 KRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSM 590 (1062)
T ss_pred cccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhh
Confidence 443211123678999999999999999998 8889999998888777665444558999998 31
Q ss_pred CCCEEEEEECCCcEEEEEccc-------ceE-EEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeE
Q 001336 859 DNNIIAIGMEDSSIQIYNVRV-------DEV-KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFL 930 (1097)
Q Consensus 859 ~~~~la~g~~dg~v~vwd~~~-------~~~-~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~ 930 (1097)
..+.++..+ +..+++.+.. +.. ....+.....+..++|- +..|+.|..+|.+.+||+.....+. ..
T Consensus 591 s~n~vv~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk--~d~lv~GD~~GNl~~WDlg~R~SRg--~~ 664 (1062)
T KOG1912|consen 591 SENLVVLDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWK--DDILVVGDVEGNLVVWDLGRRQSRG--VR 664 (1062)
T ss_pred hhceeeecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhcc--CCeeEeecccCceeEEecccccccC--cc
Confidence 112333333 2233333321 111 11111112233446664 6789999999999999987643222 11
Q ss_pred eecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEE
Q 001336 931 TIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVL 1010 (1097)
Q Consensus 931 ~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vw 1010 (1097)
..+... .......+-|....+++-...-+.+||.+....+..+....-+-.+..+.+......++ ..|+++|+-
T Consensus 665 d~p~~r----a~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~ 738 (1062)
T KOG1912|consen 665 DSPDPR----AHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVL--PNDNKERFR 738 (1062)
T ss_pred CCCCch----hhheecccCCCCceEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccCceec--CCCCceeEE
Confidence 111111 22333444454334444455668899998888777774212233344444443333333 345577776
Q ss_pred eCCCCc
Q 001336 1011 TASTLR 1016 (1097)
Q Consensus 1011 d~~~~~ 1016 (1097)
.+....
T Consensus 739 ~m~mks 744 (1062)
T KOG1912|consen 739 VMPMKS 744 (1062)
T ss_pred eccccC
Confidence 655433
No 176
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.1e-18 Score=197.20 Aligned_cols=261 Identities=13% Similarity=0.173 Sum_probs=202.4
Q ss_pred eEEEEeecCCCeeEEEEccCCCe---EEEEEeCCCeEEEEEcCCC---ceeeeeeeeEeeccccCccccccccCCCCCCe
Q 001336 311 TVVMTLNQGSAVKSMDFHPVQQI---LLVVGTNMGDVMLWEVGSR---ERIAVKSFKVWELGACSMPLQASLSSDYTASV 384 (1097)
Q Consensus 311 ~~~~~~~h~~~V~~v~fspdg~~---lla~gs~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 384 (1097)
+.+-.+......+.++|.+.|.. |+|.|..||.|.+||...- .... .......|++.|
T Consensus 56 k~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~----------------~la~~~~h~G~V 119 (1049)
T KOG0307|consen 56 KPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEE----------------VLATKSKHTGPV 119 (1049)
T ss_pred cccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchH----------------HHhhhcccCCce
Confidence 34445556778899999998887 6899999999999998652 1110 011267899999
Q ss_pred EEEEEccCC-CEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001336 385 NRVMWSPDG-TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ 463 (1097)
Q Consensus 385 ~~v~~spd~-~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~ 463 (1097)
..+.|++.. ++||+|+.||.|.|||+..-+...... -..-...|.+++|+..-.. .|++++.+|.+.|||++..+.+
T Consensus 120 ~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pi 197 (1049)
T KOG0307|consen 120 LGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPI 197 (1049)
T ss_pred eeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcc
Confidence 999999954 599999999999999998744322110 1124567999999987666 7999999999999999999888
Q ss_pred EEeecCCc--CeEEEeecccCCccEEEEEcCCC--eEEEEEcCCCCc-eeeecCCCCceEEEEEccCC-CEEEEeeeCCC
Q 001336 464 YIFEGHES--PVYSICPHHKENIQFIFSTATDG--KIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADG-ARLFSCGTNKE 537 (1097)
Q Consensus 464 ~~~~~h~~--~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~ 537 (1097)
-.+..|.+ .+..++|+|+...+++++..+|+ .|.+||++.... ..+++.|...|.++.|++.+ ++|++++.|
T Consensus 198 i~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD-- 275 (1049)
T KOG0307|consen 198 IKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKD-- 275 (1049)
T ss_pred cccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCC--
Confidence 87776655 36778998876644444444443 699999986554 44567888899999999977 778888764
Q ss_pred CCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc
Q 001336 538 GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVN 594 (1097)
Q Consensus 538 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 594 (1097)
+.|.+|+.++++.+..+....+ .+..+.|+|... .+++++-||.|.|+.+.+..
T Consensus 276 --~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 276 --NRIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred --CCeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 4699999999999999988555 899999999886 67778899999999987654
No 177
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=5.4e-16 Score=146.21 Aligned_cols=281 Identities=17% Similarity=0.219 Sum_probs=192.2
Q ss_pred CeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEE
Q 001336 321 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 400 (1097)
Q Consensus 321 ~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 400 (1097)
.|.+-+++|.+++ +++|+.+|.|.+..+++-..-..+ +....+.-...+|.++|..++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa~---------~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSAE---------PPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcceE-EEEecCCCeEEEEEehhhhccccC---------CCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 4556688999986 589999999999998643211100 01111111247899999999998 55677775
Q ss_pred CCCEEEEEEccCCeee---eeee--eeeccc-----CcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCC
Q 001336 401 SKHIVHLYTYHGGDEL---RNHL--EIEAHV-----GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 470 (1097)
Q Consensus 401 ~dg~i~iwd~~~~~~~---~~~~--~l~~h~-----~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~ 470 (1097)
. |.|+-|......+- ++.. ...-|. -.|+++...|..+ -+++++.|+.++-||+++|+..++++||+
T Consensus 80 d-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 D-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred C-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 5 99999987643321 1000 011222 2588999998877 57778899999999999999999999999
Q ss_pred cCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCC----------ceEEEEEccCCCEEEEeeeCCCCCc
Q 001336 471 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH----------SSTMMAYSADGARLFSCGTNKEGES 540 (1097)
Q Consensus 471 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~v~~~~~s~~~~~l~~~~~~~~~~~ 540 (1097)
+.|.+++-. .....+++|++||++|+||.++.+....+....+ .|-++ .-+...+++++. .
T Consensus 157 DYvH~vv~R--~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCGgG-----p 227 (325)
T KOG0649|consen 157 DYVHSVVGR--NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGGG-----P 227 (325)
T ss_pred ceeeeeeec--ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE--eccCceEEecCC-----C
Confidence 999999752 2225799999999999999999888766544322 34444 446678888763 2
Q ss_pred eEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCC-CE
Q 001336 541 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG-IL 619 (1097)
Q Consensus 541 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~ 619 (1097)
.+.+|.++..+....|.-.. .+..+.|.. +.++++++.+.|.-|.+. |.+...+... ...+.+..|+... ++
T Consensus 228 ~lslwhLrsse~t~vfpipa--~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~--s~~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPA--RVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVE--STACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEeccc--ceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCC--ccceeeecccCCceEE
Confidence 59999999988777776543 566677744 578888888899999875 4444444332 3345555565443 34
Q ss_pred EEEEECCCcEEEE
Q 001336 620 LAVSTNDNGIKIL 632 (1097)
Q Consensus 620 l~s~~~dg~i~iw 632 (1097)
|-.++....+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4445555555554
No 178
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=9.4e-15 Score=159.44 Aligned_cols=606 Identities=12% Similarity=0.096 Sum_probs=341.0
Q ss_pred CCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecC----------CCcEEEEEEeCCC
Q 001336 381 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP----------NKQLSVVTCGEDR 450 (1097)
Q Consensus 381 ~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d----------~~~~~l~s~s~d~ 450 (1097)
...-.++.|+|.| ++|.|+.. .|.+-|..+-+.+. .+.-|...|+.+.|.|- ..+++|+++...|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3346788999877 66777654 57888887765444 57789999999999873 2345788899999
Q ss_pred cEEEEECCCCceeEEeecCCcCeEEEeecccCCc--cEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEcc-CCC
Q 001336 451 VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI--QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA-DGA 527 (1097)
Q Consensus 451 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~ 527 (1097)
.|.+||...+..+..+..|.+++..++|.+..+. .+|+.-....++.+|+.++++.............++.+.| |.+
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence 9999999999999999999999999998776543 4667777779999999999998888877666677788877 334
Q ss_pred EEEEeeeCCCCCceEEEEeC-CC------CeeeEEecCCCC----------------cc--------eEEEEEcCCCCEE
Q 001336 528 RLFSCGTNKEGESYLVEWNE-SE------GAVKRTYHGLGK----------------RS--------VGVVQFDTTKNRF 576 (1097)
Q Consensus 528 ~l~~~~~~~~~~~~i~~wd~-~~------~~~~~~~~~~~~----------------~~--------v~~~~~~~~~~~l 576 (1097)
.+...+. .+.+.+-+. .. ++..+.-..|.+ .+ ...++|+|.-+.+
T Consensus 170 h~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 170 HFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred eEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 4433332 112322221 11 122221111111 00 1124678877777
Q ss_pred EEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCC--CEEEEEECCCcEEEEEcCCCceEEEEecccccccccc
Q 001336 577 LAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG--ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRV 654 (1097)
Q Consensus 577 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 654 (1097)
+.......+.++|++-..++.++.... +.+.-+.+-|++ ..|++.-.||.+.+|--+......++-..
T Consensus 246 lfi~~prellv~dle~~~~l~vvpier--~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~-------- 315 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYECCLAVVPIER--GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNA-------- 315 (1062)
T ss_pred EEEEeccceEEEcchhhceeEEEEecc--CCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccch--------
Confidence 777778889999999999999988763 345566776654 68999999999999976543222221100
Q ss_pred cccccccCCcccccccCccccccccccccccccccccCCC-CCCCccc-cCcccccccccccccccccccCCCceeeE--
Q 001336 655 ASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSN-DSRNFTD-VKPKIADEAVEKSRIWKLTEITEPSQCRS-- 730 (1097)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~d~~i~~w~~~~~~~~~~~~~-- 730 (1097)
.++.+..+...-+.++..|-+ .+...|. ...+..-..+|...+|.+.++........
T Consensus 316 -------------------~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~ 376 (1062)
T KOG1912|consen 316 -------------------SLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSS 376 (1062)
T ss_pred -------------------hhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccc
Confidence 001110000000000000000 0000111 12233334456667777664321111000
Q ss_pred --e-------------------ccCC-CcCccceEEEEEcc-----------CC-------ceeeeeccCcEEEEeccCC
Q 001336 731 --L-------------------RLPD-NLTAMRVSRLIYTN-----------SG-------LAILALASNAVHKLWKWPR 770 (1097)
Q Consensus 731 --~-------------------~~~~-~~~~~~i~~l~~sp-----------dg-------~~l~~~~~dg~i~vw~~~~ 770 (1097)
+ .+.. .+|.....+....| .| ..++.|...|+|.++|+.+
T Consensus 377 iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst 456 (1062)
T KOG1912|consen 377 IELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVST 456 (1062)
T ss_pred ccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecc
Confidence 0 0000 12222232222221 11 1456677778888776553
Q ss_pred CCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe----------CCeEEEEEcCCCcee
Q 001336 771 NERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS----------GGKISLFNMMTFKTM 840 (1097)
Q Consensus 771 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s----------dg~i~iwd~~~~~~~ 840 (1097)
+.+.. .+.- |...|.++.|-.+.+++-.+. .+.+.+-|+.+|...
T Consensus 457 ----------------------~~v~~-~fsv--ht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk 511 (1062)
T KOG1912|consen 457 ----------------------NAVAA-SFSV--HTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK 511 (1062)
T ss_pred ----------------------hhhhh-hhcc--cccceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccccc
Confidence 32222 1222 889999999988777665442 134778889887543
Q ss_pred E--EeCC-CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEe-cCC--------------
Q 001336 841 T--TFMP-PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS-NTL-------------- 902 (1097)
Q Consensus 841 ~--~~~~-~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s-~dg-------------- 902 (1097)
. .+++ ...+|+.+..|. -++||+....|.-+.+||+++..+++.....---|+.+.|+ |.-
T Consensus 512 ~fR~l~~~despI~~irvS~-~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sm 590 (1062)
T KOG1912|consen 512 RFRGLQKPDESPIRAIRVSS-SGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSM 590 (1062)
T ss_pred ccccCCCCCcCcceeeeecc-cCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhh
Confidence 3 2233 456799999998 89999999999999999998876655444332338889998 322
Q ss_pred --CEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEEEEeCCCcceeeeeec
Q 001336 903 --NVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVP 979 (1097)
Q Consensus 903 --~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~vwd~~~~~~~~~~~~ 979 (1097)
+..++.+.|. +++.+.-.........+...........+..++| .+..|+.| .+|.+.+||+...........
T Consensus 591 s~n~vv~ds~es--~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~d~ 666 (1062)
T KOG1912|consen 591 SENLVVLDSVES--RIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVRDS 666 (1062)
T ss_pred hhceeeeccccc--hheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCccCC
Confidence 2233333222 2222211110000000100000000011222333 34467776 789999999764332222211
Q ss_pred cCCCCCEEEEEEec-CCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCc
Q 001336 980 REASGPITHATYSC-DSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGG 1058 (1097)
Q Consensus 980 ~~h~~~v~~v~~s~-dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~ 1058 (1097)
..|.....-..+-| |++.++ --.|+ +-+||.+...++..+. |-++.-..+.+.+.-. .-++. ..|..
T Consensus 667 p~~ra~~l~~~~ipG~~~~lv-l~~d~-~~lwdtk~~~lV~sia-------g~dssfrlldvdlc~~--~~~~l-~~d~~ 734 (1062)
T KOG1912|consen 667 PDPRAHSLTFPQIPGDHTTLV-LELDW-LPLWDTKADTLVLSIA-------GMDSSFRLLDVDLCEK--SPLVL-PNDNK 734 (1062)
T ss_pred CCchhhheecccCCCCceEEE-EecCc-ceecccccceeeeeec-------cCCcceEEEEEEeccc--Cceec-CCCCc
Confidence 12223333333344 444433 44444 7889988877776553 2234444444454332 22222 23336
Q ss_pred EEEEecCC
Q 001336 1059 VYIIEPLE 1066 (1097)
Q Consensus 1059 v~~W~~~~ 1066 (1097)
+|+-..+.
T Consensus 735 ~Rf~~m~m 742 (1062)
T KOG1912|consen 735 ERFRVMPM 742 (1062)
T ss_pred eeEEeccc
Confidence 66655543
No 179
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=6.1e-17 Score=160.61 Aligned_cols=275 Identities=14% Similarity=0.158 Sum_probs=196.0
Q ss_pred EEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc--CCCEEEEEECCCEEEEEEcc
Q 001336 334 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFGVAYSKHIVHLYTYH 411 (1097)
Q Consensus 334 lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~~las~~~dg~i~iwd~~ 411 (1097)
.+|++...|.|++||..+++.+.. ++++...++.++|.. ....+.+|+.||+|++||++
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 578999999999999999887653 778899999999987 46789999999999999999
Q ss_pred CCeeeeeeeeeeccc-CcEEEEEEecCCCcEEEEEEe----CCCcEEEEECCCCce-eEEe-ecCCcCeEEEeecccCCc
Q 001336 412 GGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCG----EDRVIKVWDAVTGTK-QYIF-EGHESPVYSICPHHKENI 484 (1097)
Q Consensus 412 ~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~~~l~s~s----~d~~i~iwd~~~~~~-~~~~-~~h~~~v~~~~~~~~~~~ 484 (1097)
+.....++ .+.+|. .+..+++-.-.++ .+++|. .|-.|.+||++..+. +..+ ..|.+.|++++|+|...
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p- 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP- 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-
Confidence 87655443 355666 5667777665566 567664 366899999998766 5544 57999999999998765
Q ss_pred cEEEEEcCCCeEEEEEcCCCCc---eeeecCCCCceEEEEEccCC-CEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCC
Q 001336 485 QFIFSTATDGKIKAWLYDNLGS---RVDYDAPGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG 560 (1097)
Q Consensus 485 ~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 560 (1097)
+.|++|+.||.|.+||+..... +.....+...|..+.|..++ +.+.+.+.. ....+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~----Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHM----ETFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEcc----CceeEEEccCCChhhcccCcc
Confidence 7999999999999999875532 22233455579999998877 345555443 358999999887554443321
Q ss_pred Cc--------c-eEEE-EEcC-CCCEEEEEe-CCCcEEEEECC---C---CceEEEEecCCCCCCcceEEEcCCCCEEEE
Q 001336 561 KR--------S-VGVV-QFDT-TKNRFLAAG-DEFMIKFWDMD---N---VNLLASIDADGGLQASPCIRFNKEGILLAV 622 (1097)
Q Consensus 561 ~~--------~-v~~~-~~~~-~~~~l~~~~-~dg~i~iwd~~---~---~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s 622 (1097)
-. . -+.+ +.+| ++..++.++ .-+...++-+. + ++.+..+.+ ++...|.++.|...+.++.+
T Consensus 255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~T 333 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYT 333 (376)
T ss_pred chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeec
Confidence 00 0 0111 1223 334455544 35666665443 2 233444443 34667889999999999999
Q ss_pred EECCCcEEEEEcCC
Q 001336 623 STNDNGIKILANAD 636 (1097)
Q Consensus 623 ~~~dg~i~iw~~~~ 636 (1097)
|+.||.+.+|..+.
T Consensus 334 GGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 334 GGEDGLLQAWKVED 347 (376)
T ss_pred cCCCceEEEEecCC
Confidence 99999999998633
No 180
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=1.2e-15 Score=153.42 Aligned_cols=251 Identities=13% Similarity=0.195 Sum_probs=191.0
Q ss_pred CCCCeeEEEEccCCCEEEEEeCCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCC--cEEEEEcccceE
Q 001336 805 PEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDS--SIQIYNVRVDEV 882 (1097)
Q Consensus 805 h~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg--~v~vwd~~~~~~ 882 (1097)
....+..+.|..|...|..|+....++|+................|..+-|+. .++|..+.+. .+++++.+.+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCce
Confidence 34557777899999999999966678888876555333333344577777875 5777776554 499999998888
Q ss_pred EEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-E--e
Q 001336 883 KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-V--H 959 (1097)
Q Consensus 883 ~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~--~ 959 (1097)
+..+. ...+|.++.++ .+.|+.+=++. |+|||++.-+ .+...+...+...++.++++++.+.||+. + .
T Consensus 81 ICe~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mk-----lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t 151 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMK-----LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT 151 (391)
T ss_pred EEEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccce-----eehhhhccCCCccceEeeccCCCCceEEecCCCC
Confidence 87766 45678888886 45666665555 9999999844 33333333222245677777778889998 3 5
Q ss_pred CCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCe-EEEEeCCCCceeeeeCCCCcCCCCCCCceeeE
Q 001336 960 ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGS-VGVLTASTLRLRCRINPTAYLPTNPSLRVYPL 1038 (1097)
Q Consensus 960 d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~-v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l 1038 (1097)
.|.|.+||+.+.+.+..+. .|.+.+.+++|++||.+|||+|+.|+ ||||.+.+|+.+..+..+.+ + ..|+++
T Consensus 152 ~GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~----~~IySL 224 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P----VSIYSL 224 (391)
T ss_pred CceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e----eEEEEE
Confidence 6999999999999998888 89999999999999999999999987 78999999999999886653 2 335555
Q ss_pred EEEEcCCCCCEEEEEecCCcEEEEecCCCCcccCCCCCC
Q 001336 1039 VIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPN 1077 (1097)
Q Consensus 1039 ~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~~~~~~~~~~~ 1077 (1097)
+|+| ++.+|++.|.-++|++++++.....-..+|++
T Consensus 225 --~Fs~-ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~ 260 (391)
T KOG2110|consen 225 --SFSP-DSQFLAASSNTETVHIFKLEKVSNNPPESPTA 260 (391)
T ss_pred --EECC-CCCeEEEecCCCeEEEEEecccccCCCCCCCC
Confidence 9999 68999999999999999999877443333333
No 181
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.9e-16 Score=164.50 Aligned_cols=248 Identities=15% Similarity=0.212 Sum_probs=161.9
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001336 376 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 455 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 455 (1097)
.+.||++.|+|++|+.||.+|++|+.|-.+.|||.-..+.+..+ -.||...|.++.|-|....-.++||..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 48999999999999999999999999999999999876655543 4599999999999997665589999999999999
Q ss_pred ECCCC----------ceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCc-eee---------ecCCCC
Q 001336 456 DAVTG----------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVD---------YDAPGH 515 (1097)
Q Consensus 456 d~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~---------~~~~~~ 515 (1097)
|+... +..+.+..|...|..++..+... ..+.++++||+|+-+|++.... ... +...--
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99742 33455677888998888644332 7899999999999999986321 111 111112
Q ss_pred ceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001336 516 SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL 595 (1097)
Q Consensus 516 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 595 (1097)
...++.++|...+++..|. .+...++||.+.. +..+.... . ..++|.. .++.|+-|....-+.
T Consensus 202 elk~ltisp~rp~~laVGg---sdpfarLYD~Rr~--lks~~s~~---~--~~~~pp~-------~~~cv~yf~p~hlkn 264 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGG---SDPFARLYDRRRV--LKSFRSDG---T--MNTCPPK-------DCRCVRYFSPGHLKN 264 (758)
T ss_pred eeeeeeecCCCCceEEecC---CCchhhhhhhhhh--ccCCCCCc---c--ccCCCCc-------ccchhheecCccccC
Confidence 5678899997665444432 2457899995322 11111110 0 0111100 112222221111000
Q ss_pred EEE-EecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEec
Q 001336 596 LAS-IDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVE 645 (1097)
Q Consensus 596 ~~~-~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 645 (1097)
..- +. .....++-++|+|+|.-|.+.-....|+++++..+......+.
T Consensus 265 ~~gn~~--~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~ 313 (758)
T KOG1310|consen 265 SQGNLD--RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFL 313 (758)
T ss_pred cccccc--cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeecC
Confidence 000 00 0012356789999997666665556899999988855554443
No 182
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=4.2e-16 Score=153.33 Aligned_cols=383 Identities=11% Similarity=0.117 Sum_probs=236.7
Q ss_pred EEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEE-ECC
Q 001336 324 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA-YSK 402 (1097)
Q Consensus 324 ~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~-~~d 402 (1097)
-+.|||+|+|+ |+.+.- .+.|=|.++-+.... ...-+.|..+.|..|..+++++ ..|
T Consensus 13 ~c~fSp~g~yi-As~~~y-rlviRd~~tlq~~ql--------------------f~cldki~yieW~ads~~ilC~~yk~ 70 (447)
T KOG4497|consen 13 FCSFSPCGNYI-ASLSRY-RLVIRDSETLQLHQL--------------------FLCLDKIVYIEWKADSCHILCVAYKD 70 (447)
T ss_pred ceeECCCCCee-eeeeee-EEEEeccchhhHHHH--------------------HHHHHHhhheeeeccceeeeeeeecc
Confidence 57899999976 555443 677777776654331 1224578889999988876664 778
Q ss_pred CEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccC
Q 001336 403 HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE 482 (1097)
Q Consensus 403 g~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 482 (1097)
+.|.+|++...+-.. .+..-..++.+++|||||+. +|.+...|-.|.+|.+.+.+.... .-....+..++| .+
T Consensus 71 ~~vqvwsl~Qpew~c---kIdeg~agls~~~WSPdgrh-iL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f--~~ 143 (447)
T KOG4497|consen 71 PKVQVWSLVQPEWYC---KIDEGQAGLSSISWSPDGRH-ILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAF--HP 143 (447)
T ss_pred ceEEEEEeecceeEE---EeccCCCcceeeeECCCcce-EeeeecceeEEEEEEeccceeEEe-cccccCceeEEE--CC
Confidence 899999998765333 36667788999999999976 688888999999999988876543 223344566777 56
Q ss_pred CccEEEEEcCCCeEEEEEcCC---CCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCC
Q 001336 483 NIQFIFSTATDGKIKAWLYDN---LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 559 (1097)
Q Consensus 483 ~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 559 (1097)
+|++.+..+.-.....+++.. -.....+.......+.+.|+|||..|++- |.--.-.+..+ +
T Consensus 144 dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVw-------------d~~Leykv~aY--e 208 (447)
T KOG4497|consen 144 DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVW-------------DNVLEYKVYAY--E 208 (447)
T ss_pred CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEe-------------cchhhheeeee--e
Confidence 678887776532211111110 01112233334467789999999887653 32111111122 2
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcc--------------------eEEEcCCCCE
Q 001336 560 GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASP--------------------CIRFNKEGIL 619 (1097)
Q Consensus 560 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~--------------------~v~~s~~~~~ 619 (1097)
.+-.+..+.|+|.+++|+.|+.|+.+++.+--+-+.+..+-. ...+. |+.|.|..
T Consensus 209 ~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflh---l~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~-- 283 (447)
T KOG4497|consen 209 RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLH---LCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD-- 283 (447)
T ss_pred eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhcc---chhccCchhhhhhhhhcchhhhcccccccCCCc--
Confidence 223678899999999999999999999977655544443311 11111 11221110
Q ss_pred EEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCc
Q 001336 620 LAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNF 699 (1097)
Q Consensus 620 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1097)
-...+|.....
T Consensus 284 -------~~a~~~~~se~-------------------------------------------------------------- 294 (447)
T KOG4497|consen 284 -------LEAHIWEESET-------------------------------------------------------------- 294 (447)
T ss_pred -------cccCccccchh--------------------------------------------------------------
Confidence 00111111000
Q ss_pred cccCcccccccccccccccccccCCCceeeEeccC--CCcCccceEEEEEccCCceeeeeccC--cEEEEeccCCCCCCc
Q 001336 700 TDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLP--DNLTAMRVSRLIYTNSGLAILALASN--AVHKLWKWPRNERNS 775 (1097)
Q Consensus 700 ~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~spdg~~l~~~~~d--g~i~vw~~~~~~~~~ 775 (1097)
+|+... .+.....+..+ .....-.+.-++|++|..++++-.+. +.+-+||+.
T Consensus 295 ----------------~YE~~~--~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq------ 350 (447)
T KOG4497|consen 295 ----------------IYEQQM--TPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQ------ 350 (447)
T ss_pred ----------------hhhhhh--cceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEech------
Confidence 000000 00000000000 01123456789999999999988775 566666554
Q ss_pred cCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEE
Q 001336 776 TGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLA 854 (1097)
Q Consensus 776 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 854 (1097)
.-++..... ...+|.+..|.|....|+.+. ...+++|......++..-. ..-.|..+.
T Consensus 351 ----------------~l~l~avLi----Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~-~GF~i~~l~ 409 (447)
T KOG4497|consen 351 ----------------NLKLHAVLI----QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK-KGFNIQKLQ 409 (447)
T ss_pred ----------------hhhhhhhhh----hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC-CCceeeeEE
Confidence 333333222 568999999999998888887 6679999986655554432 346799999
Q ss_pred EeCCCCCEEEEEECCC
Q 001336 855 FHPQDNNIIAIGMEDS 870 (1097)
Q Consensus 855 ~sp~~~~~la~g~~dg 870 (1097)
|.- +|..++..+.|.
T Consensus 410 W~~-~g~~i~l~~kDa 424 (447)
T KOG4497|consen 410 WLQ-PGEFIVLCGKDA 424 (447)
T ss_pred ecC-CCcEEEEEcCCc
Confidence 998 888888888876
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.5e-15 Score=143.23 Aligned_cols=254 Identities=13% Similarity=0.113 Sum_probs=180.1
Q ss_pred cceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCC
Q 001336 740 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS 819 (1097)
Q Consensus 740 ~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 819 (1097)
..|.+-+++|.+++++++..+|.|.++.+..-... . .-..|+....... +|.++|+.++|. ..
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~---s----------a~~~gk~~iv~eq--ahdgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG---S----------AEPPGKLKIVPEQ--AHDGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc---c----------cCCCCCcceeecc--ccCCCeeeeeee--hh
Confidence 34556688999999999999999999987632110 0 0112222222223 499999999998 46
Q ss_pred EEEEEeCCeEEEEEcCCCce------eEEeC-------CCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEe
Q 001336 820 YVMSASGGKISLFNMMTFKT------MTTFM-------PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL 886 (1097)
Q Consensus 820 ~la~~sdg~i~iwd~~~~~~------~~~~~-------~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l 886 (1097)
+|++++||.|+=|....... +...+ ..-..|+++-..|..+ -+..++.|+.++.||+++|+..+++
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en-Si~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN-SILFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC-cEEEecCCeEEEEEEecCCEEEEEE
Confidence 88888899999887643221 11111 1234689999999444 4555558999999999999999999
Q ss_pred cccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCC--CccCCeEEEEcCCCcEEEEEeCCeEE
Q 001336 887 KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTA--SALADTRVQFHLDQTHLLAVHETQIA 964 (1097)
Q Consensus 887 ~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~s~dg~~l~~~~d~~v~ 964 (1097)
+||++-|.++.--.....+.||++||++++||.++++............... ...+|.++ .-+..+|+++....+.
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCGgGp~ls 230 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGGGPKLS 230 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE--eccCceEEecCCCcee
Confidence 9999999999885556678899999999999999977433211111111111 11334444 4455689999899999
Q ss_pred EEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceee
Q 001336 965 IYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRC 1019 (1097)
Q Consensus 965 vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~ 1019 (1097)
+|.+...++...+.. ..++..+.|-.| .++++++.+.|.-|.+. |.+..
T Consensus 231 lwhLrsse~t~vfpi---pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a 279 (325)
T KOG0649|consen 231 LWHLRSSESTCVFPI---PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQA 279 (325)
T ss_pred EEeccCCCceEEEec---ccceeEeeeecc--eEEEeccccceeeeeec-cEEEE
Confidence 999999999988875 457888888655 77888888899999874 34433
No 184
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=5e-17 Score=161.21 Aligned_cols=293 Identities=13% Similarity=0.146 Sum_probs=203.0
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCC---CceE
Q 001336 442 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG---HSST 518 (1097)
Q Consensus 442 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~ 518 (1097)
.++++-..|.|++||..+++.+..|+++...++.+.|........+.+++.||+|++||++.......+.... .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 6888889999999999999999999999999999999765455789999999999999999876655443332 2556
Q ss_pred EEEEccCCCEEEEeeeCCCCCceEEEEeCCCCee-eEEecCCCCcceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc--
Q 001336 519 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAV-KRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVN-- 594 (1097)
Q Consensus 519 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-- 594 (1097)
+++..-.++.++++..--..+..+.+||.+..+. ++.+...+...|++++|+|.. +.|++||.||.|.+||+....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 6666667777777765444567799999998866 666655444599999999976 789999999999999987542
Q ss_pred --eEEEEecCCCCCCcceEEEcCCC-CEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccC
Q 001336 595 --LLASIDADGGLQASPCIRFNKEG-ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSA 671 (1097)
Q Consensus 595 --~~~~~~~~~~~~~v~~v~~s~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1097)
++.++. +...|.++.|..++ +.|.+-+..++..+|+++.+.. ...+..........
T Consensus 202 DaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~-~~~~~~~~~~~~d~----------------- 260 (376)
T KOG1188|consen 202 DALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE-ETWLENPDVSADDL----------------- 260 (376)
T ss_pred hhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh-hhcccCccchhhhH-----------------
Confidence 333332 24568899999876 5688889999999999998842 22221111000000
Q ss_pred ccccccccccccccccccccCCCCCCCccccCccccccc-ccccccccccccCCCceeeEeccCCCcCccceEEEEEccC
Q 001336 672 NANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEA-VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS 750 (1097)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 750 (1097)
...+. ..+-.+.....+....+.++. .++..++.+..............+..+|..-|+++.|.-.
T Consensus 261 ---r~~~~----------~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~ 327 (376)
T KOG1188|consen 261 ---RKEDN----------CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVK 327 (376)
T ss_pred ---Hhhhh----------hhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcc
Confidence 00000 000000001112223333222 4566666555444444444455555668888999999999
Q ss_pred CceeeeeccCcEEEEecc
Q 001336 751 GLAILALASNAVHKLWKW 768 (1097)
Q Consensus 751 g~~l~~~~~dg~i~vw~~ 768 (1097)
+..+.+|+.||.+.+|..
T Consensus 328 ~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 328 NDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cceeeccCCCceEEEEec
Confidence 999999999999999974
No 185
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.4e-16 Score=156.93 Aligned_cols=297 Identities=10% Similarity=0.120 Sum_probs=209.9
Q ss_pred EeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCC
Q 001336 315 TLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT 394 (1097)
Q Consensus 315 ~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~ 394 (1097)
.++|.+.|+++.||.++++ ||+|+.|..++||++...-.... . ++++. .-..|.+.|.|++|....+
T Consensus 52 ~~~H~GCiNAlqFS~N~~~-L~SGGDD~~~~~W~~de~~~~k~--~---------KPI~~-~~~~H~SNIF~L~F~~~N~ 118 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRF-LASGGDDMHGRVWNVDELMVRKT--P---------KPIGV-MEHPHRSNIFSLEFDLENR 118 (609)
T ss_pred hhhhccccceeeeccCCeE-EeecCCcceeeeechHHHHhhcC--C---------CCcee-ccCccccceEEEEEccCCe
Confidence 3459999999999999885 59999999999999864321111 0 11111 1245778999999999999
Q ss_pred EEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-ee--EEeecCCc
Q 001336 395 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQ--YIFEGHES 471 (1097)
Q Consensus 395 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~-~~--~~~~~h~~ 471 (1097)
+|.+|+.+++|..-|+++.+.+.... -....+.|..+..+|..+ .|++.+.++.|.+||.+... .+ ..+.....
T Consensus 119 ~~~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~ 195 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK 195 (609)
T ss_pred eEecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCCCc
Confidence 99999999999999999987665221 122334899999999977 89999999999999987654 22 12222344
Q ss_pred CeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeec-------CCCCceEEEEEccCCCEEEEeeeCCCCCceEEE
Q 001336 472 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-------APGHSSTMMAYSADGARLFSCGTNKEGESYLVE 544 (1097)
Q Consensus 472 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 544 (1097)
..+.+.|+|... .+|++.+..+-+-+||.+.....+... .....-.++.|+|+|+.+++.-.. ..-.+
T Consensus 196 ~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~----~~P~~ 270 (609)
T KOG4227|consen 196 NFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRG----KCPLY 270 (609)
T ss_pred cceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhcc----CCCEE
Confidence 566777877654 688889999999999998654433211 111123567899999999886432 13456
Q ss_pred EeCCCCee-eEEecCCCC-----cceEEEEEcCCCCEEEEEeCCCcEEEEECCC-----C------------------ce
Q 001336 545 WNESEGAV-KRTYHGLGK-----RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-----V------------------NL 595 (1097)
Q Consensus 545 wd~~~~~~-~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~------------------~~ 595 (1097)
||+-+.++ +.++..... ..+.+++|..+- -+++|+++-.|++|.+.. | +.
T Consensus 271 ~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~ 349 (609)
T KOG4227|consen 271 FDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKE 349 (609)
T ss_pred eeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecce
Confidence 78766433 333332221 134456776554 489999999999998742 1 12
Q ss_pred EEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001336 596 LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 596 ~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~ 635 (1097)
+.++.+| ...++.|.|+|...+|++.+-.+.++||.-.
T Consensus 350 ~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 350 LTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence 3345544 7788999999999999999999999999743
No 186
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.74 E-value=1.2e-15 Score=159.44 Aligned_cols=268 Identities=14% Similarity=0.196 Sum_probs=186.1
Q ss_pred ecCCCeeEEEEccCCCeEEEEEeCCCeEEEEE-cCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEc--cCC
Q 001336 317 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWE-VGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS--PDG 393 (1097)
Q Consensus 317 ~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--pd~ 393 (1097)
.|...|.|+.|+.... ++.+ +.|..+.+|. +.+.+.... .+. ...++. ..| +....-- ...
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~-~dDh~~~~~~~~~~~s~~~~------~~p--~df~pt---~~h---~~~rs~~~g~~~ 75 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFV-SDDHQIFKWSDVSRDSVEVA------KLP--DDFVPT---DMH---LGGRSSGGGKGS 75 (737)
T ss_pred ccceeEEeecccccce-EEEe-ccCceEEEeecccchhhhhh------hCC--cccCCc---ccc---ccccccCCCCCc
Confidence 3667778999999887 4344 4555555554 443322110 000 000000 001 0000000 133
Q ss_pred CEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCe
Q 001336 394 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV 473 (1097)
Q Consensus 394 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v 473 (1097)
..++.++.||.+.|-+-.. + +.+ ....|.+.|.+-.|+|||. -|+|++.||.|++|. ++|-...++.....+|
T Consensus 76 d~~~i~s~DGkf~il~k~~-r-VE~--sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v 148 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA-R-VER--SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESI 148 (737)
T ss_pred ceEEEEcCCceEEEecccc-h-hhh--hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCcee
Confidence 5788899999988877443 2 222 4778999999999999999 799999999999999 7887666777778899
Q ss_pred EEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeee
Q 001336 474 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 553 (1097)
Q Consensus 474 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 553 (1097)
+|++|.|+.+ ..+++.+ +.+.+=.+...........|.+-|.++.|++..+.++++|. +...++||.. |..+
T Consensus 149 ~c~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~L 220 (737)
T KOG1524|consen 149 RCARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANL 220 (737)
T ss_pred EEEEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-Cccc
Confidence 9999977665 4555554 56666666767778888899999999999999999999986 5579999965 5555
Q ss_pred EEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEE
Q 001336 554 RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI 631 (1097)
Q Consensus 554 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~i 631 (1097)
..-..|.- +|++++|.|+ ..++.++. .+++ +.. ...+.|..++|++||..+++|...|.+.+
T Consensus 221 f~S~~~ey-~ITSva~npd-~~~~v~S~-nt~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 221 FTSAAEEY-AITSVAFNPE-KDYLLWSY-NTAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ccCChhcc-ceeeeeeccc-cceeeeee-eeee------------ecC-CCccceEEEEEcCCCceeeccccCceEEE
Confidence 55555554 8999999999 55555553 2333 211 22567899999999999999999987765
No 187
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=7.6e-16 Score=149.18 Aligned_cols=288 Identities=15% Similarity=0.265 Sum_probs=209.9
Q ss_pred ceEEEEeecCCCeeEEEEc--cCCCeEEEEEeC----CCeEEEEEcC--CCceeeeeeeeEeeccccCccccccccCCCC
Q 001336 310 KTVVMTLNQGSAVKSMDFH--PVQQILLVVGTN----MGDVMLWEVG--SRERIAVKSFKVWELGACSMPLQASLSSDYT 381 (1097)
Q Consensus 310 ~~~~~~~~h~~~V~~v~fs--pdg~~lla~gs~----dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 381 (1097)
.+.+.++...-.+.++.|| |+.++-||.|+. .+.|.|-.+. +++.+.. -...|.
T Consensus 35 ~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~------------------a~fd~~ 96 (364)
T KOG0290|consen 35 RKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED------------------ANFDHP 96 (364)
T ss_pred cceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc------------------CCCCCC
Confidence 4456777778889999999 666677899985 2455555543 3333221 124689
Q ss_pred CCeEEEEEccCCC-----EEEEEECCCEEEEEEccCCe-eeeeeeee-----ecccCcEEEEEEecCCCcEEEEEEeCCC
Q 001336 382 ASVNRVMWSPDGT-----LFGVAYSKHIVHLYTYHGGD-ELRNHLEI-----EAHVGSVNDLAFSYPNKQLSVVTCGEDR 450 (1097)
Q Consensus 382 ~~V~~v~~spd~~-----~las~~~dg~i~iwd~~~~~-~~~~~~~l-----~~h~~~V~~l~~s~d~~~~~l~s~s~d~ 450 (1097)
-+++.+.|.|+.+ +||+++ ..+++|.+...+ .+.....+ ..+..++++..|+.-..+ ++.++|-|-
T Consensus 97 YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDT 173 (364)
T KOG0290|consen 97 YPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDT 173 (364)
T ss_pred CCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccC
Confidence 9999999999863 566653 359999987421 12211112 246678999999986665 899999999
Q ss_pred cEEEEECCCCc---eeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceee-ecCC--CCceEEEEEcc
Q 001336 451 VIKVWDAVTGT---KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YDAP--GHSSTMMAYSA 524 (1097)
Q Consensus 451 ~i~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~--~~~v~~~~~s~ 524 (1097)
+..|||+++|. ....+-.|...|..++|.. +..+.+++.|.||.+|+||++..+.... ++.. ..+...++|++
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnk 252 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNK 252 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCc
Confidence 99999999873 3556788999999999975 3347899999999999999997665433 3332 34677888887
Q ss_pred C-CCEEEEeeeCCCCCceEEEEeCCCC-eeeEEecCCCCcceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce------
Q 001336 525 D-GARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNL------ 595 (1097)
Q Consensus 525 ~-~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~------ 595 (1097)
. -+++++...+ ...|.+.|++.. ..+..+.+|.. .|+.++|.|.. .+|.++|+|..+.+||+...-.
T Consensus 253 qDpnymATf~~d---S~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 253 QDPNYMATFAMD---SNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred CCchHHhhhhcC---CceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 4 4567776654 336899999875 57788899987 99999999976 7899999999999999975322
Q ss_pred EEEEecCCCCCCcceEEEcC-CCCEEEEEECC
Q 001336 596 LASIDADGGLQASPCIRFNK-EGILLAVSTND 626 (1097)
Q Consensus 596 ~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~~d 626 (1097)
+..+. ....|+.+.|++ .+..++.+...
T Consensus 329 ilay~---a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 329 ILAYT---AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred hhhhh---ccceeeeeeecccCCCEEEEEecC
Confidence 22222 245799999997 56788877654
No 188
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.74 E-value=6.3e-18 Score=185.14 Aligned_cols=279 Identities=18% Similarity=0.306 Sum_probs=215.5
Q ss_pred EeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCC
Q 001336 315 TLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT 394 (1097)
Q Consensus 315 ~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~ 394 (1097)
.++|...|+|+.|.-.|.++ ++|++|..|+||..+++.++.. ..||.+.|+.++.+.+..
T Consensus 186 LlgH~naVyca~fDrtg~~I-itgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~~n~ 245 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYI-ITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSSNNT 245 (1113)
T ss_pred HHhhhhheeeeeeccccceE-eecCccceeeeeeccchhhhcc-------------------CCCCccccchhccchhhh
Confidence 44589999999999999975 8999999999999999988875 789999999999999999
Q ss_pred EEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE---eec-CC
Q 001336 395 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI---FEG-HE 470 (1097)
Q Consensus 395 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~---~~~-h~ 470 (1097)
++|+++.|..|++|.+.++..+. .+.||.+.|++++|+|- .+.+.||++++||.+-.-.++. +.. ..
T Consensus 246 ~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~ 316 (1113)
T KOG0644|consen 246 MIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEK 316 (1113)
T ss_pred hhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCcccc
Confidence 99999999999999999988665 58899999999999984 4778999999999871111111 111 12
Q ss_pred cCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCC-EEEEeeeCCCCCceEEEEeCCC
Q 001336 471 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGA-RLFSCGTNKEGESYLVEWNESE 549 (1097)
Q Consensus 471 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~ 549 (1097)
.-+.++.| ..++..+.|++.|+.-..|.+..... +...+.-+.++.+-. +.++.- .+..+.+|++.+
T Consensus 317 ~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwnl~~ 384 (1113)
T KOG0644|consen 317 DLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWNLYT 384 (1113)
T ss_pred cceeeeec--cccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeee----eeeEeeeeeccc
Confidence 34555555 55567799999999988886553211 111111122222222 222221 255789999999
Q ss_pred CeeeEEecCCCCcceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCc
Q 001336 550 GAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNG 628 (1097)
Q Consensus 550 ~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~ 628 (1097)
|.+.+...+|.. .+..+.++|-...+ .+++.||...|||+-.|.+++.... + ...+....|+++|..++...+-|.
T Consensus 385 g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~-g-h~kl~d~kFSqdgts~~lsd~hgq 461 (1113)
T KOG0644|consen 385 GQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI-G-HGKLVDGKFSQDGTSIALSDDHGQ 461 (1113)
T ss_pred chhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec-c-cceeeccccCCCCceEecCCCCCc
Confidence 999999999987 89999999977554 5678999999999999998888763 2 446678899999999999888899
Q ss_pred EEEEEcCCC
Q 001336 629 IKILANADG 637 (1097)
Q Consensus 629 i~iw~~~~~ 637 (1097)
++|.....+
T Consensus 462 l~i~g~gqs 470 (1113)
T KOG0644|consen 462 LYILGTGQS 470 (1113)
T ss_pred eEEeccCCC
Confidence 999877554
No 189
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=3.1e-17 Score=173.40 Aligned_cols=250 Identities=14% Similarity=0.208 Sum_probs=188.8
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEcc-----CCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCc
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYH-----GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV 451 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~-----~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~ 451 (1097)
+..|.+.|..++|.|-...|++|+.||++++|++. ....+.+..++.+|.++|.|++..+++. .+++|+.||+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg~ 367 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDGT 367 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCce
Confidence 66799999999999999999999999999999992 3344677888999999999999999999 7999999999
Q ss_pred EEEEECCC------C----ceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCC--CCceEE
Q 001336 452 IKVWDAVT------G----TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP--GHSSTM 519 (1097)
Q Consensus 452 i~iwd~~~------~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~ 519 (1097)
|+.|++.. . .....+.||.+.|+.++++..+ ..|++++.||+++.|+...... ..+... .+--.+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 99995541 1 2335788999999999997766 5699999999999998775544 222221 122334
Q ss_pred EEEccCC-CEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCC------CcceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001336 520 MAYSADG-ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG------KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 592 (1097)
Q Consensus 520 ~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 592 (1097)
+.+-... ...++... .+.-.+++.+....+..+.... ...+..+..+|.+.+.+++.+|+.|+++|..+
T Consensus 445 vd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred EeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 4443222 11111111 1112233344443333333211 12466788899999999999999999999999
Q ss_pred CceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 593 VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 593 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
++++.....| ...++++++.|+|.+|++++.|+.+++|.+...
T Consensus 521 ~~~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 521 GKILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cccchheeec--cceecceeecCCCceEEeecCCceeehhhccch
Confidence 9999998866 778999999999999999999999999998655
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=1.2e-15 Score=169.42 Aligned_cols=273 Identities=11% Similarity=0.115 Sum_probs=176.0
Q ss_pred cccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeec-cCcEEEEeccCCCCCCccCccccccC
Q 001336 706 IADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA-SNAVHKLWKWPRNERNSTGKATTNQA 784 (1097)
Q Consensus 706 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~ 784 (1097)
++...++.|.+|++...........+. .......++++|+++.|++++ .++.|.+|++..
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~-------------- 66 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD-------------- 66 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC--------------
Confidence 444667999999996321111222221 234567889999999887764 478888887641
Q ss_pred CcccCCCCCccccc-cCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEcCC-Cc---eeEEeCCCCCCeEEEEEeC
Q 001336 785 PQLWQPPSGILMTN-DISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FK---TMTTFMPPPPAATFLAFHP 857 (1097)
Q Consensus 785 ~~~w~~~~~~~~~~-~~~~~~h~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~-~~---~~~~~~~~~~~i~~l~~sp 857 (1097)
++.+... ... .......++|+|+|+++++++ ++.|.+|++.+ +. .+..+. +.....+++++|
T Consensus 67 -------~g~l~~~~~~~---~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p 135 (330)
T PRK11028 67 -------DGALTFAAESP---LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP 135 (330)
T ss_pred -------CCceEEeeeec---CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC
Confidence 1111000 010 223457899999999999887 78999999964 32 222232 234567789999
Q ss_pred CCCCEEE-EEECCCcEEEEEcccceEEE-------EecccccCeEEEEEecCCCEEEEEeC-CCcEEEEEcCC--Ccccc
Q 001336 858 QDNNIIA-IGMEDSSIQIYNVRVDEVKT-------KLKGHQKRITGLAFSNTLNVLVSSGA-DSQLCVWSTDG--WEKQA 926 (1097)
Q Consensus 858 ~~~~~la-~g~~dg~v~vwd~~~~~~~~-------~l~~h~~~V~~l~~s~dg~~l~s~~~-Dg~i~iwd~~~--~~~~~ 926 (1097)
++++++ +...++.|.+||+.+...+. .... ......++|+|||++++++.. ++.|.+|+++. ++...
T Consensus 136 -~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 136 -DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred -CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence 777775 45567999999997632221 1111 233578999999999988776 89999999974 23211
Q ss_pred eeeEeecCCCCCCccCCeEEEEcCCCcEEEEE--eCCeEEEEeCCCcce----eeeeeccCCCCCEEEEEEecCCCEEEE
Q 001336 927 SKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLEC----LKQFVPREASGPITHATYSCDSQSIYV 1000 (1097)
Q Consensus 927 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~--~d~~v~vwd~~~~~~----~~~~~~~~h~~~v~~v~~s~dg~~l~s 1000 (1097)
...+...............+.|+|||++|+++ .++.|.+|+++.... +..... ......++|+|||++|++
T Consensus 214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIA 290 (330)
T ss_pred EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEE
Confidence 11121111111111233468999999999996 468999999965432 222221 124567899999999998
Q ss_pred Eec-CCeEEEEeCC
Q 001336 1001 AFE-EGSVGVLTAS 1013 (1097)
Q Consensus 1001 ~s~-Dg~v~vwd~~ 1013 (1097)
+.. +++|.+|+++
T Consensus 291 a~~~~~~v~v~~~~ 304 (330)
T PRK11028 291 AGQKSHHISVYEID 304 (330)
T ss_pred EEccCCcEEEEEEc
Confidence 876 8999999875
No 191
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=3.8e-16 Score=150.98 Aligned_cols=284 Identities=18% Similarity=0.297 Sum_probs=193.7
Q ss_pred hccCcCCCcccccccccccc-----ceeeCCCCC-----CcceeecCCC-------CceEEEEee--cCCCeeEEEEccC
Q 001336 270 KRSRPFGISDEVNNLSVNIL-----PVAYTPQSL-----GQSSYSTDDL-------PKTVVMTLN--QGSAVKSMDFHPV 330 (1097)
Q Consensus 270 ~~~~~~~h~~~v~~l~~~~~-----~~~~s~~~~-----~~~~~~~~~~-------~~~~~~~~~--h~~~V~~v~fspd 330 (1097)
....+..|..|||.|...+. .-.|+..+. .+++|..... +-+++..|. +-+.|.|+.|.|+
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 33445589999998876543 333442221 2555644432 234555555 5669999999999
Q ss_pred CCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc--CCCEEEEEECCCEEEEE
Q 001336 331 QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFGVAYSKHIVHLY 408 (1097)
Q Consensus 331 g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~~las~~~dg~i~iw 408 (1097)
+..+++. .|..|.+|++..+..+.. .+ ......+|+...++-+||| ||+.+++. .|+++..|
T Consensus 135 s~klasm--~dn~i~l~~l~ess~~va-ev------------~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~ 198 (370)
T KOG1007|consen 135 SDKLASM--DDNNIVLWSLDESSKIVA-EV------------LSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFW 198 (370)
T ss_pred CCeeEEe--ccCceEEEEcccCcchhe-ee------------cccccccccceecccccCCCCccceEEEe-CCCcEEEE
Confidence 9876443 489999999998876421 11 1111345777889999999 78888776 67889999
Q ss_pred EccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCC-CceeEEeecCCcCeEEEeecccCCccEE
Q 001336 409 TYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT-GTKQYIFEGHESPVYSICPHHKENIQFI 487 (1097)
Q Consensus 409 d~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l 487 (1097)
|+++..+...+ -..|...|..+.|+|+-+. +|+||+.||.|+|||.+. ..+++++.+|...|+++.|++..+ ++|
T Consensus 199 D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd-qLi 274 (370)
T KOG1007|consen 199 DLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD-QLI 274 (370)
T ss_pred Eccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc-eEE
Confidence 99987665432 3478899999999998776 899999999999999874 567889999999999999988776 799
Q ss_pred EEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEE
Q 001336 488 FSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVV 567 (1097)
Q Consensus 488 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~ 567 (1097)
++|+.|..|.+|....-.....+. |--|.. -..+.+....++ -+. ...+.++..|.+ .|+++
T Consensus 275 Ls~~SDs~V~Lsca~svSSE~qi~----------~~~des----e~e~~dseer~k--pL~-dg~l~tydehED-SVY~~ 336 (370)
T KOG1007|consen 275 LSGGSDSAVNLSCASSVSSEQQIE----------FEDDES----ESEDEDSEERVK--PLQ-DGQLETYDEHED-SVYAL 336 (370)
T ss_pred EecCCCceeEEEeccccccccccc----------cccccc----cCcchhhHHhcc--ccc-cccccccccccc-ceEEE
Confidence 999999999999765322211111 100000 000000011111 111 234556777877 99999
Q ss_pred EEcCCCCEE-EEEeCCCcEEEEECC
Q 001336 568 QFDTTKNRF-LAAGDEFMIKFWDMD 591 (1097)
Q Consensus 568 ~~~~~~~~l-~~~~~dg~i~iwd~~ 591 (1097)
+|+.-..++ ++-+.||.+.|=.+.
T Consensus 337 aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 337 AWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eeccCCCeeEEEeccCceEEeecCC
Confidence 998877664 556799998875543
No 192
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=6.3e-17 Score=171.04 Aligned_cols=267 Identities=12% Similarity=0.201 Sum_probs=189.1
Q ss_pred Eee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCC
Q 001336 315 TLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 393 (1097)
Q Consensus 315 ~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~ 393 (1097)
++. |.+.|+.++|+|.... +++++.||++.+|+++....-....+ .+...+.+|.++|.|++.++++
T Consensus 289 tl~s~~d~ir~l~~~~sep~-lit~sed~~lk~WnLqk~~~s~~~~~-----------epi~tfraH~gPVl~v~v~~n~ 356 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPV-LITASEDGTLKLWNLQKAKKSAEKDV-----------EPILTFRAHEGPVLCVVVPSNG 356 (577)
T ss_pred eeecchhhhhhhhcCCCCCe-EEEeccccchhhhhhcccCCccccce-----------eeeEEEecccCceEEEEecCCc
Confidence 444 8999999999999885 58999999999999943211111111 1122378999999999999999
Q ss_pred CEEEEEECCCEEEEEEccCCe-------eeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEe
Q 001336 394 TLFGVAYSKHIVHLYTYHGGD-------ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 466 (1097)
Q Consensus 394 ~~las~~~dg~i~iwd~~~~~-------~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 466 (1097)
..+.+|+.||+|+.|++.... .......+.||.+.|+.+++|+... .|++++.||+++.|+...... .+|
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f 433 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTF 433 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-ccc
Confidence 999999999999999664221 1112235889999999999999888 699999999999999766655 444
Q ss_pred ecCCc--CeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCC-------CCceEEEEEccCCCEEEEeeeCCC
Q 001336 467 EGHES--PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP-------GHSSTMMAYSADGARLFSCGTNKE 537 (1097)
Q Consensus 467 ~~h~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~~~ 537 (1097)
..... .-.++.+....- ...++...-+.--+++++.......+... ...+.-+.+.|.+...+++..
T Consensus 434 ~~~~e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he--- 509 (577)
T KOG0642|consen 434 GEPKEHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE--- 509 (577)
T ss_pred CCccccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc---
Confidence 33222 223343321110 11222222222223333333333322211 124667788899988888875
Q ss_pred CCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 001336 538 GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 602 (1097)
Q Consensus 538 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 602 (1097)
+..|+++|..++.++.....|.. .++++++.|+|.+|++++.|+.+++|.+....++.....|
T Consensus 510 -d~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 -DRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred -CCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 44699999999999999998887 8999999999999999999999999999877776665544
No 193
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=2.1e-17 Score=181.07 Aligned_cols=237 Identities=15% Similarity=0.218 Sum_probs=183.2
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 456 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 456 (1097)
+.||..+|.|+.|...|.++++|+.|..|+||..+++.++. ...||.+.|+.++.+.+.. ++++++.|..|++|.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVWR 260 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEEe
Confidence 77999999999999999999999999999999999987766 5889999999999998877 899999999999999
Q ss_pred CCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceee----ecCCCCceEEEEEccCCCEEEEe
Q 001336 457 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD----YDAPGHSSTMMAYSADGARLFSC 532 (1097)
Q Consensus 457 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~ 532 (1097)
+.++.++..+.+|++.|++++|+|.. +.+.||++++||.+-...... .......+.++.|...+..++++
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 99999999999999999999996643 788999999999882221111 11122356677777788888887
Q ss_pred eeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceE
Q 001336 533 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCI 611 (1097)
Q Consensus 533 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 611 (1097)
+.++. -..|.... +..+.. .+..+.++.+. .+.+++-.+-.+++|++.+|.+.+.+.+| ...+..+
T Consensus 335 s~d~e----a~n~e~~~------l~~~~~-~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~gh--sd~~yvL 401 (1113)
T KOG0644|consen 335 SRDGE----ARNHEFEQ------LAWRSN-LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGH--SDEVYVL 401 (1113)
T ss_pred cCCcc----cccchhhH------hhhhcc-ceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccc--ccceeee
Confidence 76442 22332211 111111 12222222222 45566667888999999999999998866 6688999
Q ss_pred EEcC-CCCEEEEEECCCcEEEEEcCCC
Q 001336 612 RFNK-EGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 612 ~~s~-~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
.++| +.....+++.||...|||+-.|
T Consensus 402 d~Hpfn~ri~msag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 402 DVHPFNPRIAMSAGYDGSTIIWDIWEG 428 (1113)
T ss_pred eecCCCcHhhhhccCCCceEeeecccC
Confidence 9999 4456678999999999999887
No 194
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=3.2e-16 Score=149.77 Aligned_cols=307 Identities=14% Similarity=0.140 Sum_probs=194.2
Q ss_pred EEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEE
Q 001336 554 RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 633 (1097)
Q Consensus 554 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~ 633 (1097)
..+.+|.. .++++.|..++ +|++|..-|.|++|++.+......+..++ ...|+.+..-|+ ..+.+-+.|..+.+|+
T Consensus 8 fvLRp~~~-~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g-~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 8 FVLRPHSS-SVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFG-RLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred eEeccccc-hheehhhccch-hhhcccccceEEEEEeecCccchhhhhhc-cceeeceeecCC-cchhhcCCCceEEEEE
Confidence 34456665 88899998776 59999999999999999998888877543 457788888886 5688889999999999
Q ss_pred cCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccc
Q 001336 634 NADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEK 713 (1097)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 713 (1097)
+.-+ ..+.. |... .+ +..|...+ +.+... +. .+.+..-+. +.
T Consensus 84 ia~s-~~i~i---~Si~-----~n----slgFCrfS-----l~~~~k----~~---------------eqll~yp~r-gs 125 (323)
T KOG0322|consen 84 IAYS-AFISI---HSIV-----VN----SLGFCRFS-----LVKKPK----NS---------------EQLLEYPSR-GS 125 (323)
T ss_pred ccCc-ceEEE---eeee-----cc----ccccccce-----eccCCC----cc---------------hhheecCCc-cc
Confidence 8764 11111 1000 00 01111111 111100 00 000110000 00
Q ss_pred cccccccccCCCceeeEeccCCCcCccceEEEEEcc-CCc--eeeeeccCcEEEEeccCCCCCCccCccccccCCcccCC
Q 001336 714 SRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTN-SGL--AILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP 790 (1097)
Q Consensus 714 i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dg~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~ 790 (1097)
-. -...+.....+.+...-+..+..+.+.+..+.. ++. .+++|.++|.+.+||+..+... -++
T Consensus 126 de-~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~-------------~~~ 191 (323)
T KOG0322|consen 126 DE-THKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI-------------IQL 191 (323)
T ss_pred ch-hhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee-------------ecc
Confidence 00 000111111111111122233455666665332 232 4667778999999998864211 011
Q ss_pred CCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCC--Cc--eeEEeCCCCCCeEEEEEeCCCCCEEEE
Q 001336 791 PSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FK--TMTTFMPPPPAATFLAFHPQDNNIIAI 865 (1097)
Q Consensus 791 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~--~~--~~~~~~~~~~~i~~l~~sp~~~~~la~ 865 (1097)
...-....... .|..+|.++.|.+.-..=++++ +..+..|++.. +. ......-....|..+.+-| |++++|+
T Consensus 192 ~~~~kv~~~~a--sh~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlAT 268 (323)
T KOG0322|consen 192 PQSSKVESPNA--SHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILAT 268 (323)
T ss_pred ccccccccchh--hccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEee
Confidence 11111111122 2899999999987655555666 77788888753 22 2222333456788999999 9999999
Q ss_pred EECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 001336 866 GMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST 919 (1097)
Q Consensus 866 g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~ 919 (1097)
+++|+.||||+.++.+.+..++-|.+.|.+++|+|+...+|.++.|+.|.+|++
T Consensus 269 AGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 269 AGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999999999999999999986
No 195
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=2.1e-16 Score=151.05 Aligned_cols=284 Identities=16% Similarity=0.180 Sum_probs=195.8
Q ss_pred ecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccC-CCCCCeEEEEEccCCCE
Q 001336 317 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSS-DYTASVNRVMWSPDGTL 395 (1097)
Q Consensus 317 ~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~spd~~~ 395 (1097)
.|.+.|+++.|-.+++ |.+|..-|.|++|++++...... +. -|...|+.+.--|+ ..
T Consensus 12 p~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~lq~~p~-d~ 69 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITNLQSIPN-DS 69 (323)
T ss_pred cccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeeceeecCC-cc
Confidence 4899999999999998 57999999999999998765432 33 46778999998887 56
Q ss_pred EEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecC-----CCcE--EEEEEeCCC-cEEEEECCCCceeEEe-
Q 001336 396 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP-----NKQL--SVVTCGEDR-VIKVWDAVTGTKQYIF- 466 (1097)
Q Consensus 396 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d-----~~~~--~l~s~s~d~-~i~iwd~~~~~~~~~~- 466 (1097)
|.+-++|+.+.+|++.-+.-+. -|+-.++++-|++- ++.. .++.-+... .+.+-|......+...
T Consensus 70 l~tqgRd~~L~lw~ia~s~~i~------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~d 143 (323)
T KOG0322|consen 70 LDTQGRDPLLILWTIAYSAFIS------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIAD 143 (323)
T ss_pred hhhcCCCceEEEEEccCcceEE------EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccC
Confidence 8888899999999998755332 35555666666542 2110 111111100 1222222222222211
Q ss_pred ---ecCCcCeEEEeecccCC-ccEEEEEcCCCeEEEEEcCCCCcee----------eecCCCCceEEEEEccCCCEEEEe
Q 001336 467 ---EGHESPVYSICPHHKEN-IQFIFSTATDGKIKAWLYDNLGSRV----------DYDAPGHSSTMMAYSADGARLFSC 532 (1097)
Q Consensus 467 ---~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~----------~~~~~~~~v~~~~~s~~~~~l~~~ 532 (1097)
.+..+.+.+..+..... .-+++.|.++|.+.+||+.++.... ....+..++.++.+.+.-..=+++
T Consensus 144 d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisg 223 (323)
T KOG0322|consen 144 DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISG 223 (323)
T ss_pred chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCC
Confidence 12345566665332222 2356788899999999999874333 233456688888888655554555
Q ss_pred eeCCCCCceEEEEeCCCC--e-eeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcc
Q 001336 533 GTNKEGESYLVEWNESEG--A-VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASP 609 (1097)
Q Consensus 533 ~~~~~~~~~i~~wd~~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 609 (1097)
+. ...+..|++... . .++....-....+..+.+-||++.++++|-|+.|+||+.++.+++..+..| ...|+
T Consensus 224 ga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH--sagvn 297 (323)
T KOG0322|consen 224 GA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH--SAGVN 297 (323)
T ss_pred Cc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh--hccee
Confidence 43 234777776532 2 222222222336788999999999999999999999999999999999977 67999
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEEc
Q 001336 610 CIRFNKEGILLAVSTNDNGIKILAN 634 (1097)
Q Consensus 610 ~v~~s~~~~~l~s~~~dg~i~iw~~ 634 (1097)
+++|+|+..++|+++.|+.|.+|++
T Consensus 298 ~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 298 AVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999985
No 196
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=3.7e-14 Score=157.37 Aligned_cols=273 Identities=13% Similarity=0.195 Sum_probs=179.0
Q ss_pred eEEEEEeCCCeEEEEEcCC-CceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEE-CCCEEEEEEc
Q 001336 333 ILLVVGTNMGDVMLWEVGS-RERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY-SKHIVHLYTY 410 (1097)
Q Consensus 333 ~lla~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~-~dg~i~iwd~ 410 (1097)
+++++...++.|.+||+.+ ++...... + .+.+....++++||+++|++++ .++.|.+|++
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~ 64 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI 64 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence 4556667899999999964 33222111 1 1335677899999999987764 5788999999
Q ss_pred cC-CeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEe-CCCcEEEEECCC-Cc---eeEEeecCCcCeEEEeecccCCc
Q 001336 411 HG-GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVT-GT---KQYIFEGHESPVYSICPHHKENI 484 (1097)
Q Consensus 411 ~~-~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s-~d~~i~iwd~~~-~~---~~~~~~~h~~~v~~~~~~~~~~~ 484 (1097)
.. ++ +...... ...+....++|+|+++ ++++++ .++.|.+|++.+ +. .+..+.+ .....++++ ++++
T Consensus 65 ~~~g~-l~~~~~~-~~~~~p~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~--~p~g 137 (330)
T PRK11028 65 ADDGA-LTFAAES-PLPGSPTHISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANI--DPDN 137 (330)
T ss_pred CCCCc-eEEeeee-cCCCCceEEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEe--CCCC
Confidence 73 33 2221112 1233567899999999 455554 588999999864 32 2333332 234566777 4566
Q ss_pred cEEE-EEcCCCeEEEEEcCCCCceee------ecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCC--C--eee
Q 001336 485 QFIF-STATDGKIKAWLYDNLGSRVD------YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE--G--AVK 553 (1097)
Q Consensus 485 ~~l~-s~~~dg~i~iwd~~~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~--~~~ 553 (1097)
++++ +...++.|.+||+++...... ....+.....++|+|+|++++++.. ....|.+|++.. + +.+
T Consensus 138 ~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 138 RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred CEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEE
Confidence 6674 555679999999986432211 1122345678999999999988753 245799999873 3 334
Q ss_pred EEecCCC-----CcceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc----eEEEEecCCCCCCcceEEEcCCCCEEEEE
Q 001336 554 RTYHGLG-----KRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVN----LLASIDADGGLQASPCIRFNKEGILLAVS 623 (1097)
Q Consensus 554 ~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~s~ 623 (1097)
..+.... ......+.++|++++++++. .++.|.+|+++... .+..+.. ......+.++|+|++|+++
T Consensus 215 ~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~va 291 (330)
T PRK11028 215 QTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIAA 291 (330)
T ss_pred EEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEEE
Confidence 4432211 11223588999999999986 57899999986533 2222221 1234689999999999987
Q ss_pred EC-CCcEEEEEcCC
Q 001336 624 TN-DNGIKILANAD 636 (1097)
Q Consensus 624 ~~-dg~i~iw~~~~ 636 (1097)
.. +++|.+|+++.
T Consensus 292 ~~~~~~v~v~~~~~ 305 (330)
T PRK11028 292 GQKSHHISVYEIDG 305 (330)
T ss_pred EccCCcEEEEEEcC
Confidence 75 89999998753
No 197
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.9e-15 Score=150.40 Aligned_cols=314 Identities=7% Similarity=0.061 Sum_probs=218.8
Q ss_pred CcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEc
Q 001336 736 NLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALS 815 (1097)
Q Consensus 736 ~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s 815 (1097)
.+|.+.|.++.|+.++++|++|+.|..+++|.+..- ..-.+.+.+. +.+..|...|.+++|.
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~----------------~~~k~~KPI~--~~~~~H~SNIF~L~F~ 114 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDEL----------------MVRKTPKPIG--VMEHPHRSNIFSLEFD 114 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHH----------------HhhcCCCCce--eccCccccceEEEEEc
Confidence 459999999999999999999999999999987631 1112222332 3344578999999999
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCC--CCeEEEEEeCCCCCEEEEEECCCcEEEEEcccce-E--EEEeccc
Q 001336 816 KNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPP--PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE-V--KTKLKGH 889 (1097)
Q Consensus 816 ~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~-~--~~~l~~h 889 (1097)
..++++.+|. +++|.+.|+++.+.+..+.... +.|..+..+| -.+.+++.+.+|.|.+||..... . +..+..-
T Consensus 115 ~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~ 193 (609)
T KOG4227|consen 115 LENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS 193 (609)
T ss_pred cCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence 9999999998 8999999999999888876332 5799999999 67899999999999999997654 1 1122223
Q ss_pred ccCeEEEEEecCC-CEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEEEEe
Q 001336 890 QKRITGLAFSNTL-NVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYE 967 (1097)
Q Consensus 890 ~~~V~~l~~s~dg-~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~vwd 967 (1097)
......+.|.|.. .+|++.+..+.+-+||+........+ .....+-......-..+.|+|.|..+.+- ...--.+||
T Consensus 194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~-~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D 272 (609)
T KOG4227|consen 194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQ-RSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFD 272 (609)
T ss_pred CccceeeeecCCCceeEEeccccCCCCceeeccccchHHh-hhccccCcccchhhhheeeCCCCCeehhhhccCCCEEee
Confidence 4456778899865 57788888889999998763311100 00111111101234678899999988773 334455677
Q ss_pred CCCcceeeeeeccCC-------CCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceee------e----------eCCC
Q 001336 968 APKLECLKQFVPREA-------SGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRC------R----------INPT 1024 (1097)
Q Consensus 968 ~~~~~~~~~~~~~~h-------~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~------~----------~~~~ 1024 (1097)
+-+..+..... .| ...+.+++|..|- .+++|+.+-.|.+|.+.....-. + +...
T Consensus 273 ~~S~R~~V~k~--D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~ 349 (609)
T KOG4227|consen 273 FISQRCFVLKS--DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKE 349 (609)
T ss_pred eecccceeEec--cCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecce
Confidence 76654432222 22 3467788888664 49999999999999986532211 1 1111
Q ss_pred CcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCCCcccCCCCCC
Q 001336 1025 AYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPN 1077 (1097)
Q Consensus 1025 ~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~~~~~~~~~~~ 1077 (1097)
.....||.+-+.-+ .|+| ...+|++.+..+.+++|..-..- |..--|-
T Consensus 350 ~~VLrGHRSv~NQV--RF~~-H~~~l~SSGVE~~~KlWS~~r~P--~~~D~~~ 397 (609)
T KOG4227|consen 350 LTVLRGHRSVPNQV--RFSQ-HNNLLVSSGVENSFKLWSDHRLP--WSYDLPF 397 (609)
T ss_pred eEEEecccccccce--eecC-CcceEeccchhhheeccccccCC--cccCCcc
Confidence 12244787777766 8888 57899999999999999876433 5444443
No 198
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.69 E-value=4.3e-15 Score=143.80 Aligned_cols=251 Identities=13% Similarity=0.191 Sum_probs=186.1
Q ss_pred cccCCCCCCeEEEEEcc-CCCEEEEEECC-------CEEEEEEccCCeee------eeeeeee-cccCcEEEEEEecCCC
Q 001336 375 SLSSDYTASVNRVMWSP-DGTLFGVAYSK-------HIVHLYTYHGGDEL------RNHLEIE-AHVGSVNDLAFSYPNK 439 (1097)
Q Consensus 375 ~~~~~h~~~V~~v~~sp-d~~~las~~~d-------g~i~iwd~~~~~~~------~~~~~l~-~h~~~V~~l~~s~d~~ 439 (1097)
.++..|.+.|+.++-+| |.+.|+++..+ ..+.||.+...... .....+. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 35777899999999999 67778887653 24789998653211 1111233 4556899999999998
Q ss_pred cEEEEEEeCCCcEEEEECCCCce-eEEee-----cCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeec-C
Q 001336 440 QLSVVTCGEDRVIKVWDAVTGTK-QYIFE-----GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-A 512 (1097)
Q Consensus 440 ~~~l~s~s~d~~i~iwd~~~~~~-~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~ 512 (1097)
.+++-. |..|.+|++..+.. +..+. +|....++-+|+|..+|+.+++.+ |+++..||+++..+...+. .
T Consensus 137 --klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dA 212 (370)
T KOG1007|consen 137 --KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDA 212 (370)
T ss_pred --eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhh
Confidence 566655 88999999988765 33332 355667778899888888877665 6999999999888777654 5
Q ss_pred CCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC-eeeEEecCCCCcceEEEEEcCCC-CEEEEEeCCCcEEEEEC
Q 001336 513 PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDM 590 (1097)
Q Consensus 513 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~ 590 (1097)
|+..+..+.|+|+-.++++.+.| ++.|++||.+.. .+++.+.+|.- .++++.|+|.. ..++++|.|..|.+|..
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gD---dgyvriWD~R~tk~pv~el~~HsH-WvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGD---DGYVRIWDTRKTKFPVQELPGHSH-WVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCC---CccEEEEeccCCCccccccCCCce-EEEEEEecCccceEEEecCCCceeEEEec
Confidence 67789999999988765554432 557999999875 57788888876 99999999975 56778889999999976
Q ss_pred CCCc-----------------------------eEEEEecCCCCCCcceEEEcC-CCCEEEEEECCCcEEEEEcC
Q 001336 591 DNVN-----------------------------LLASIDADGGLQASPCIRFNK-EGILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 591 ~~~~-----------------------------~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~~dg~i~iw~~~ 635 (1097)
..-. .+.++. .|...|++++|+. |.-.+|+-+.||.+.|=.+.
T Consensus 289 ~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd--ehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 289 SSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD--EHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccccccccCcchhhHHhccccccccccccc--ccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 3211 112333 3477899999998 55678889999998875543
No 199
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.69 E-value=8.1e-15 Score=164.61 Aligned_cols=251 Identities=14% Similarity=0.139 Sum_probs=183.3
Q ss_pred CCCCCeEEEEEcc-CCCEEEEEECCCEEEEEEccCCeee--eee-eeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001336 379 DYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDEL--RNH-LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 454 (1097)
Q Consensus 379 ~h~~~V~~v~~sp-d~~~las~~~dg~i~iwd~~~~~~~--~~~-~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~i 454 (1097)
.....|.|++|+| +..+||.|..+|.|.+||+..+... ... .....|..+|+.+.|..+-.+.-+++++.||.|+.
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICS 319 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEee
Confidence 3567999999999 7778888999999999999887641 111 12346899999999987554334899999999999
Q ss_pred EECCCCcee------EEee------cCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCc--------eeeecCCC
Q 001336 455 WDAVTGTKQ------YIFE------GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS--------RVDYDAPG 514 (1097)
Q Consensus 455 wd~~~~~~~------~~~~------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~ 514 (1097)
|+++.-... .... .-...++++.|.+... ..++.|+++|.|.--+...... ...+..|.
T Consensus 320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI 398 (555)
T ss_pred eeccccccchhhcccccccccccccccccceeeEeeccCCC-ceEEEEcCCcEEEEEeccCCcccccccccccccccccC
Confidence 987643221 1111 1234577888876544 6788899999988733222221 22455667
Q ss_pred CceEEEEEccCCCEEEEeeeCCCCCceEEEEeCC-CCeeeEEecCCCCcceEEEEEcCCCC-EEEEEeCCCcEEEEECCC
Q 001336 515 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNES-EGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDN 592 (1097)
Q Consensus 515 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 592 (1097)
++|+++.++|-+..++..+. +-.+++|... ...++..+..+.. .+..++|||... .|+++..||.|.+||+..
T Consensus 399 g~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred cceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 79999999997776555543 4479999987 6667766766665 699999999874 566666899999999975
Q ss_pred Cc--eEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 593 VN--LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 593 ~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
.. ++.+.... ....+.+.|+++|+.|++|...|++.+|++...
T Consensus 474 ~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 474 DDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 43 44444333 556778899999999999999999999998654
No 200
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.68 E-value=6.3e-15 Score=165.48 Aligned_cols=271 Identities=17% Similarity=0.200 Sum_probs=199.1
Q ss_pred CcceeecCCCCceEEEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCcee--eeeeeeEeeccccCccccccc
Q 001336 299 GQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERI--AVKSFKVWELGACSMPLQASL 376 (1097)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 376 (1097)
.+..|+.+.. ......+.-...|+|++|+|....++|.|..+|.|.+||+..+... .... ..
T Consensus 223 ~~~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls---------------~~ 286 (555)
T KOG1587|consen 223 VLLVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS---------------AL 286 (555)
T ss_pred eEEEEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccc---------------cc
Confidence 4566776665 6777888899999999999999999999999999999999887652 1111 12
Q ss_pred cCCCCCCeEEEEEccCC--CEEEEEECCCEEEEEEccCCeeeeeeeeee---------cccCcEEEEEEecCCCcEEEEE
Q 001336 377 SSDYTASVNRVMWSPDG--TLFGVAYSKHIVHLYTYHGGDELRNHLEIE---------AHVGSVNDLAFSYPNKQLSVVT 445 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~--~~las~~~dg~i~iwd~~~~~~~~~~~~l~---------~h~~~V~~l~~s~d~~~~~l~s 445 (1097)
...|..+|+.+.|..+- .-+++++.||.|..|+++.-........+. .-...+++++|.+...+ .++.
T Consensus 287 ~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiV 365 (555)
T KOG1587|consen 287 EVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIV 365 (555)
T ss_pred cccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEE
Confidence 46799999999998744 459999999999999876432211111111 12346899999998777 7999
Q ss_pred EeCCCcEEEEECC---CCc-----eeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcC-CCCceeeecCCCCc
Q 001336 446 CGEDRVIKVWDAV---TGT-----KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD-NLGSRVDYDAPGHS 516 (1097)
Q Consensus 446 ~s~d~~i~iwd~~---~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~ 516 (1097)
|+.+|.|.--+-. .+. .+..+..|.++|+++.++|-.. ..+.+++ |-++++|... .......+..+...
T Consensus 366 GTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~ 443 (555)
T KOG1587|consen 366 GTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDY 443 (555)
T ss_pred EcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccce
Confidence 9999998873322 222 1335567889999998865443 3444555 9999999877 55566666666667
Q ss_pred eEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC--eeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001336 517 STMMAYSADGARLFSCGTNKEGESYLVEWNESEG--AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 592 (1097)
Q Consensus 517 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 592 (1097)
+++++|||-...++.+. +.++.|.+||+... .++.+.... ......+.|++.|+.|++|...|.+++|++..
T Consensus 444 v~~vaWSptrpavF~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 444 VTDVAWSPTRPAVFATV---DGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eeeeEEcCcCceEEEEE---cCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 99999999887666665 34667999998754 333333333 23667788999999999999999999999864
No 201
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=7.4e-14 Score=140.64 Aligned_cols=243 Identities=12% Similarity=0.120 Sum_probs=184.5
Q ss_pred CCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001336 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 459 (1097)
Q Consensus 380 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~ 459 (1097)
....+..+.|+.|...|..|+.|| -++|+...-.... ........|.-+-|+. ..+.+++...-+.+++.+.+.
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEccc
Confidence 345677888999999999999999 5888876543211 1222233466666763 421333443334699999999
Q ss_pred CceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCC---CCceEEEEEccCCCEEEEeeeCC
Q 001336 460 GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP---GHSSTMMAYSADGARLFSCGTNK 536 (1097)
Q Consensus 460 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~ 536 (1097)
+..+..+. ...+|.++.+.. +.|+.+-.+. |.|||+++.+....+... ...+.++.+++.+.+++.-+.-
T Consensus 78 ~~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~- 150 (391)
T KOG2110|consen 78 KTTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST- 150 (391)
T ss_pred CceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC-
Confidence 98888776 556788887733 4566665544 999999998888776544 2356666667777788876532
Q ss_pred CCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceEEEEecCCCCCCcceEEEcC
Q 001336 537 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM-IKFWDMDNVNLLASIDADGGLQASPCIRFNK 615 (1097)
Q Consensus 537 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 615 (1097)
..+.|.+||..+-+.+..+..|.+ .+.+++|+++|..|+++++.|+ |||+.+.+|+.+..+.-......|.+++|+|
T Consensus 151 -t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ 228 (391)
T KOG2110|consen 151 -TSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP 228 (391)
T ss_pred -CCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC
Confidence 255699999999999999999987 9999999999999999998886 6999999999999987433355688999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCC
Q 001336 616 EGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 616 ~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
++++|++.++.++|.||.++..
T Consensus 229 ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 229 DSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCeEEEecCCCeEEEEEeccc
Confidence 9999999999999999988754
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=8.2e-15 Score=165.26 Aligned_cols=305 Identities=16% Similarity=0.245 Sum_probs=208.5
Q ss_pred CcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecC---CcCeEEEeecccCCccEEEEEcCCCeEEEEEcCC
Q 001336 427 GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH---ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 503 (1097)
Q Consensus 427 ~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 503 (1097)
.+-..+.|+|=.. .++++.....|++||.+.++.+..|..+ ...|+.+++....|..++++++.||.|+||+--.
T Consensus 1065 ~~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 3456678888777 6888887789999999999998877654 4568899988777888999999999999995321
Q ss_pred CCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCC
Q 001336 504 LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF 583 (1097)
Q Consensus 504 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 583 (1097)
... +...|+++. ..-++. ..+..+.. ..+.|.....+|+++|+-.
T Consensus 1143 ~~~------------------~~~eLVTaw------------~~Ls~~----~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1143 DKW------------------KKPELVTAW------------SSLSDQ----LPGARGTG-LVVDWQQQSGHLLVTGDVR 1187 (1387)
T ss_pred ccc------------------CCceeEEee------------cccccc----CccCCCCC-eeeehhhhCCeEEecCCee
Confidence 110 111233321 100110 11111111 3356666677888888889
Q ss_pred cEEEEECCCCceEEEEecCCCCCCcceEEEcC-CCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccC
Q 001336 584 MIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKA 662 (1097)
Q Consensus 584 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (1097)
.|+|||.+....+..+... ....|+++.-+- .|+.+++|-.||.|++||.......
T Consensus 1188 ~IRIWDa~~E~~~~diP~~-s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d---------------------- 1244 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYG-SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD---------------------- 1244 (1387)
T ss_pred EEEEEecccceeEeecccC-CCccceeecccccCCceEEEeecCCceEEeecccCCcc----------------------
Confidence 9999999998888877643 234455555443 5699999999999999997644110
Q ss_pred CcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccc-
Q 001336 663 PAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMR- 741 (1097)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~- 741 (1097)
..|.+|. .|...
T Consensus 1245 -------------------------------------------------s~v~~~R------------------~h~~~~ 1257 (1387)
T KOG1517|consen 1245 -------------------------------------------------SLVCVYR------------------EHNDVE 1257 (1387)
T ss_pred -------------------------------------------------ccceeec------------------ccCCcc
Confidence 1122222 13333
Q ss_pred -eEEEEEccCCce-eeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCC
Q 001336 742 -VSRLIYTNSGLA-ILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS 819 (1097)
Q Consensus 742 -i~~l~~spdg~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 819 (1097)
|..+.+.+.|-. |++++.||.|++||+.... ..........- ...+..+++..+++..
T Consensus 1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-------------------~e~~~~iv~~~-~yGs~lTal~VH~hap 1317 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-------------------KETFLTIVAHW-EYGSALTALTVHEHAP 1317 (1387)
T ss_pred cceeEEeecCCCcceeeeccCCeEEEEecccCc-------------------ccccceeeecc-ccCccceeeeeccCCC
Confidence 888888886655 9999999999999987420 00011110000 0123589999999999
Q ss_pred EEEEEeCCeEEEEEcCCCceeEEeCCC-------CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccc
Q 001336 820 YVMSASGGKISLFNMMTFKTMTTFMPP-------PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD 880 (1097)
Q Consensus 820 ~la~~sdg~i~iwd~~~~~~~~~~~~~-------~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~ 880 (1097)
.+|+|+.+.|+||++. |+.+..++.+ .+.+.|++|+| -.-++|+|..|.+|.||.....
T Consensus 1318 iiAsGs~q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1318 IIASGSAQLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eeeecCcceEEEEecC-hhhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCc
Confidence 9999999999999984 4444444332 34589999999 8889999999999999987654
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=7.2e-16 Score=158.11 Aligned_cols=198 Identities=16% Similarity=0.172 Sum_probs=161.4
Q ss_pred eEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecc
Q 001336 810 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG 888 (1097)
Q Consensus 810 ~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~ 888 (1097)
..++|+++|..|+++. ||++|||+..+...+.....|...|.++.|+| |+++|++-+.| ..+||+.++|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999988888888888999999999999 99999999999 899999999977766553
Q ss_pred --cccCeEEEEEecCC-----CEEEEEeCCCcEEEEEcCCCccccee-eEeecCCCCCCccCCeEEEEcCCCcEEEEE-e
Q 001336 889 --HQKRITGLAFSNTL-----NVLVSSGADSQLCVWSTDGWEKQASK-FLTIPNGRTASALADTRVQFHLDQTHLLAV-H 959 (1097)
Q Consensus 889 --h~~~V~~l~~s~dg-----~~l~s~~~Dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~ 959 (1097)
-......+.|+.|+ ...+....-+.|+.|++..+...... ..+....+ ..|.+++.|+||++++.+ .
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence 22346678898887 34444555667888888765532111 11111122 359999999999999994 8
Q ss_pred CCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCC
Q 001336 960 ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1014 (1097)
Q Consensus 960 d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~ 1014 (1097)
||.|.||+..+.+.+.... +.|..-|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 302 dGsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999988876655 58999999999999999999999999999988765
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.67 E-value=2.7e-14 Score=164.01 Aligned_cols=255 Identities=13% Similarity=0.080 Sum_probs=183.2
Q ss_pred cCCCCCCeEEEEEccCC-CEEEEEECCCEEEEEEccCC----eeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCc
Q 001336 377 SSDYTASVNRVMWSPDG-TLFGVAYSKHIVHLYTYHGG----DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV 451 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~-~~las~~~dg~i~iwd~~~~----~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~ 451 (1097)
+..|...|..++.++.. .++++|+.||+|++|+...- ...+...++..-...+.++.+.+.+. .++.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 67899999999998755 99999999999999998631 22333334544567899999999999 6899999999
Q ss_pred EEEEECCCC--c-----eeEEeecC-CcCeEEE-eecccCCccEEEEEcCCCeEEEEEcCCCCceeee--cCCCCceEEE
Q 001336 452 IKVWDAVTG--T-----KQYIFEGH-ESPVYSI-CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY--DAPGHSSTMM 520 (1097)
Q Consensus 452 i~iwd~~~~--~-----~~~~~~~h-~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~ 520 (1097)
|++.++... + +.+....+ .+.+.++ +|........++.+...+.|..||++.......+ ....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999998752 1 12222222 2334333 4433322237888888899999999877665543 3455689999
Q ss_pred EEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCC---CEEEEEe--CCCcEEEEECCCCce
Q 001336 521 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK---NRFLAAG--DEFMIKFWDMDNVNL 595 (1097)
Q Consensus 521 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~--~dg~i~iwd~~~~~~ 595 (1097)
+.+|.+.++++|.. .+.+.+||++-+.++..+......++..++.+|-. ...++++ ..+.|.+|++.+|.+
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999875 44799999999999888876655677777666533 4555544 578899999999977
Q ss_pred EEEEecC-C----------------CCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 596 LASIDAD-G----------------GLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 596 ~~~~~~~-~----------------~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
..++... + +........+...+..+.+|+.|..||.||....
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 7766432 0 0111123334445678899999999999998765
No 205
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=8.7e-15 Score=167.24 Aligned_cols=235 Identities=12% Similarity=0.087 Sum_probs=164.1
Q ss_pred CCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECC---CEEEEEEccCCeeee
Q 001336 341 MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELR 417 (1097)
Q Consensus 341 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~d---g~i~iwd~~~~~~~~ 417 (1097)
+..|.|||........ +..|...|.+.+|||||+.||.++.+ ..|++||+.+++..
T Consensus 183 ~~~i~i~d~dg~~~~~--------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~- 241 (429)
T PRK01742 183 PYEVRVADYDGFNQFI--------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK- 241 (429)
T ss_pred eEEEEEECCCCCCceE--------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-
Confidence 4689999987654321 55678889999999999999988654 37999999887632
Q ss_pred eeeeeecccCcEEEEEEecCCCcEEEEEE-eCCCcEEE--EECCCCceeEEeecCCcCeEEEeecccCCccEEEE-EcCC
Q 001336 418 NHLEIEAHVGSVNDLAFSYPNKQLSVVTC-GEDRVIKV--WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFS-TATD 493 (1097)
Q Consensus 418 ~~~~l~~h~~~V~~l~~s~d~~~~~l~s~-s~d~~i~i--wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~d 493 (1097)
....+.+| ...++|+|||+ .|+.+ +.+|.+.| ||+.+++ +..+..+...+...+| ++||+.|+. +..+
T Consensus 242 ~l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~w--SpDG~~i~f~s~~~ 313 (429)
T PRK01742 242 VVASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSW--SPDGQSILFTSDRS 313 (429)
T ss_pred EEecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEE--CCCCCEEEEEECCC
Confidence 22234444 34689999999 45554 56776555 5666665 4556667777777888 456676654 4467
Q ss_pred CeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCC
Q 001336 494 GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK 573 (1097)
Q Consensus 494 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 573 (1097)
+..++|+++..........+.. ....|+|||++++..+.+ .+.+||+.+++........ ....+.|+|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~-----~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG 383 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGD-----NVVKQDLTSGSTEVLSSTF---LDESPSISPNG 383 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCC-----CEEEEECCCCCeEEecCCC---CCCCceECCCC
Confidence 8889998765433222222222 457899999999887642 3777999888655433322 23457899999
Q ss_pred CEEEEEeCCCcEEEEEC--CCCceEEEEecCCCCCCcceEEEcCC
Q 001336 574 NRFLAAGDEFMIKFWDM--DNVNLLASIDADGGLQASPCIRFNKE 616 (1097)
Q Consensus 574 ~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~ 616 (1097)
+.|+.++.++.+.+|.+ .+|+.+..+..+ ...+..++|+|-
T Consensus 384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~--~g~~~~p~wsp~ 426 (429)
T PRK01742 384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGS--DGQVKFPAWSPY 426 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEEccCC--CCCCCCcccCCC
Confidence 99999998998888875 357778888654 456788999984
No 206
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.8e-15 Score=158.68 Aligned_cols=164 Identities=12% Similarity=0.187 Sum_probs=130.9
Q ss_pred ecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc--CCC
Q 001336 317 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGT 394 (1097)
Q Consensus 317 ~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~ 394 (1097)
+|.+.|+|++|+.||. +|++||+|-.+.|||.-..++++. +-+||...|.|+.|-| +.+
T Consensus 48 GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tnnr 108 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTNNR 108 (758)
T ss_pred cccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCCCe
Confidence 3999999999999999 679999999999999987777654 3689999999999999 678
Q ss_pred EEEEEECCCEEEEEEccCCe-------eeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee----
Q 001336 395 LFGVAYSKHIVHLYTYHGGD-------ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ---- 463 (1097)
Q Consensus 395 ~las~~~dg~i~iwd~~~~~-------~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~---- 463 (1097)
.+++|..|..|+++|+...+ .......+..|...|..++-.|++.. .+.+++.||+|+-+|++.....
T Consensus 109 iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p~~ 187 (758)
T KOG1310|consen 109 IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNPDE 187 (758)
T ss_pred EEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCccc
Confidence 99999999999999998521 12223346679999999999999966 7999999999999999863211
Q ss_pred ---E---EeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEc
Q 001336 464 ---Y---IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 501 (1097)
Q Consensus 464 ---~---~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 501 (1097)
. .+...--...++.+++... .+|+.|+.|-..++||.
T Consensus 188 ~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 188 DCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDR 230 (758)
T ss_pred cccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhh
Confidence 1 1111122346677776654 78999999999999994
No 207
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.66 E-value=2.1e-14 Score=139.27 Aligned_cols=241 Identities=15% Similarity=0.206 Sum_probs=174.3
Q ss_pred CCCCeeEEEEccCCC----EEEEEeCCeEEEEEcCC--Cce--eEEe-----CCCCCCeEEEEEeCCCCCEEEEEECCCc
Q 001336 805 PEDAVPCFALSKNDS----YVMSASGGKISLFNMMT--FKT--MTTF-----MPPPPAATFLAFHPQDNNIIAIGMEDSS 871 (1097)
Q Consensus 805 h~~~v~~l~~s~dg~----~la~~sdg~i~iwd~~~--~~~--~~~~-----~~~~~~i~~l~~sp~~~~~la~g~~dg~ 871 (1097)
|..+++.+.|.|+.+ -+...++..+|+|.+.. .+. ...+ ..+..++++..|..-+.+++.+.+-|-+
T Consensus 95 ~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTT 174 (364)
T KOG0290|consen 95 HPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTT 174 (364)
T ss_pred CCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCe
Confidence 899999999999874 23334466899999863 211 1111 2245679999998878899999999999
Q ss_pred EEEEEcccce---EEEEecccccCeEEEEEecCC-CEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEE
Q 001336 872 IQIYNVRVDE---VKTKLKGHQKRITGLAFSNTL-NVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQ 947 (1097)
Q Consensus 872 v~vwd~~~~~---~~~~l~~h~~~V~~l~~s~dg-~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 947 (1097)
..|||+.++. +...+-+|..+|..++|+..+ ..+|+.|.||.|++||+...+-. +....-+..+ .+...++
T Consensus 175 CTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS-TIIYE~p~~~----~pLlRLs 249 (364)
T KOG0290|consen 175 CTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS-TIIYEDPSPS----TPLLRLS 249 (364)
T ss_pred EEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc-eEEecCCCCC----Ccceeec
Confidence 9999999863 467788999999999999865 57899999999999999874411 1111222212 4578899
Q ss_pred EcC-CCcEEEE-E-eCCeEEEEeCCCc-ceeeeeeccCCCCCEEEEEEecCC-CEEEEEecCCeEEEEeCCCCceeeeeC
Q 001336 948 FHL-DQTHLLA-V-HETQIAIYEAPKL-ECLKQFVPREASGPITHATYSCDS-QSIYVAFEEGSVGVLTASTLRLRCRIN 1022 (1097)
Q Consensus 948 ~s~-dg~~l~~-~-~d~~v~vwd~~~~-~~~~~~~~~~h~~~v~~v~~s~dg-~~l~s~s~Dg~v~vwd~~~~~~~~~~~ 1022 (1097)
|++ |-+++|+ + ....|.|.|++.. ..+..+ ++|.+.|.+++|.|.. ..|.|++.|..+.+||+...-......
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L--~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d 327 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL--RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED 327 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecCCCcceehh--hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCC
Confidence 987 4567777 4 4578999999853 334444 4999999999999965 469999999999999998754311111
Q ss_pred CCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecC
Q 001336 1023 PTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTD 1056 (1097)
Q Consensus 1023 ~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~D 1056 (1097)
+-.... -.+.|..+ .|+|..++.++.+...
T Consensus 328 Pilay~--a~~EVNqi--~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 328 PILAYT--AGGEVNQI--QWSSSQPDWIAICFGK 357 (364)
T ss_pred chhhhh--ccceeeee--eecccCCCEEEEEecC
Confidence 111111 23667766 8888778888877654
No 208
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.9e-14 Score=162.38 Aligned_cols=201 Identities=17% Similarity=0.190 Sum_probs=147.7
Q ss_pred EEEccC-CCEEEEEeCCeEEEEEcCCCceeEEeCC-CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccc---eEEEEe
Q 001336 812 FALSKN-DSYVMSASGGKISLFNMMTFKTMTTFMP-PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD---EVKTKL 886 (1097)
Q Consensus 812 l~~s~d-g~~la~~sdg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~---~~~~~l 886 (1097)
+.|-.. |.++++|.-..|+|||...-.+...+.. ....|+++.-+...|.++|.|..||.|++||.+.. ..+...
T Consensus 1171 ~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~ 1250 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY 1250 (1387)
T ss_pred eehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee
Confidence 344443 3444444457799999987776666543 34457877766546799999999999999998753 356788
Q ss_pred cccccC--eEEEEEecCCC-EEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeE
Q 001336 887 KGHQKR--ITGLAFSNTLN-VLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQI 963 (1097)
Q Consensus 887 ~~h~~~--V~~l~~s~dg~-~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v 963 (1097)
+.|++. |..+.+-+.|- .|++|+.||.|++||+........ +.+.. +...++..+++..+++...+|+|+.+.|
T Consensus 1251 R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~--~~iv~-~~~yGs~lTal~VH~hapiiAsGs~q~i 1327 (1387)
T KOG1517|consen 1251 REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETF--LTIVA-HWEYGSALTALTVHEHAPIIASGSAQLI 1327 (1387)
T ss_pred cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccc--ceeee-ccccCccceeeeeccCCCeeeecCcceE
Confidence 889988 99999988775 499999999999999988532222 22111 1111135899999999999999877999
Q ss_pred EEEeCCCcceeeeeec-----cCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCc
Q 001336 964 AIYEAPKLECLKQFVP-----REASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLR 1016 (1097)
Q Consensus 964 ~vwd~~~~~~~~~~~~-----~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~ 1016 (1097)
.||++. |+.+..+.. ....+.+.|++|.|-.-+||+|+.|.+|.||..+...
T Consensus 1328 kIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1328 KIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred EEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 999997 443333321 1125678999999999999999999999999876654
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.66 E-value=2.9e-14 Score=140.57 Aligned_cols=228 Identities=14% Similarity=0.117 Sum_probs=173.2
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
...+|+|.+|++|++. +|++-....|.||.......-. ..+.+..|...|++|.|+|..+.|+
T Consensus 9 ~~~pitchAwn~drt~-iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQ-IAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCce-EEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence 4679999999999994 5888899999999988765221 1224789999999999999999999
Q ss_pred EEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee----EEeecCCcCe
Q 001336 398 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ----YIFEGHESPV 473 (1097)
Q Consensus 398 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~----~~~~~h~~~v 473 (1097)
+|+.|..-+||....+..-++...+..|....+++.|+|.++ .+++||.-..|.||-.+...-- +.-+.+...|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999966655667667888999999999999999 7999999999999987654322 2234567889
Q ss_pred EEEeecccCCccEEEEEcCCCeEEEEEc-----CCCC-------------ceeeecCCCCceEEEEEccCCCEEEEeeeC
Q 001336 474 YSICPHHKENIQFIFSTATDGKIKAWLY-----DNLG-------------SRVDYDAPGHSSTMMAYSADGARLFSCGTN 535 (1097)
Q Consensus 474 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~-----~~~~-------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 535 (1097)
.++.|++++ -+|++|+.|+..+++.. ++.. ...++...++.+..+.|+|+|..|+-.+.|
T Consensus 150 ~sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd 227 (361)
T KOG1523|consen 150 TSLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD 227 (361)
T ss_pred eeeeccCCc--ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC
Confidence 999997654 78999999999999853 2111 112233456689999999999999999875
Q ss_pred CCCCceEEEEeCCCCe-eeEEecCCCCcceEEEEEcC
Q 001336 536 KEGESYLVEWNESEGA-VKRTYHGLGKRSVGVVQFDT 571 (1097)
Q Consensus 536 ~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~ 571 (1097)
. .+.+-|..... .+......+. +..++.|-.
T Consensus 228 s----~v~~~da~~p~~~v~~~~~~~l-P~ls~~~is 259 (361)
T KOG1523|consen 228 S----TVSFVDAAGPSERVQSVATAQL-PLLSVSWIS 259 (361)
T ss_pred C----ceEEeecCCCchhccchhhccC-CceeeEeec
Confidence 4 57777766554 3333332222 555555543
No 210
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.66 E-value=1.5e-12 Score=148.43 Aligned_cols=196 Identities=13% Similarity=0.177 Sum_probs=151.0
Q ss_pred CCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCC-----eEEEEEccCCC
Q 001336 320 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS-----VNRVMWSPDGT 394 (1097)
Q Consensus 320 ~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----V~~v~~spd~~ 394 (1097)
..|....+..+.+. ++.++.+..+.|||+..+..... ..+... ..-+-++++.-
T Consensus 88 ~wi~g~~l~~e~k~-i~l~~~~ns~~i~d~~~~~~~~~--------------------i~~~er~~l~~~~~~g~s~~~~ 146 (967)
T KOG0974|consen 88 DWIFGAKLFEENKK-IALVTSRNSLLIRDSKNSSVLSK--------------------IQSDERCTLYSSLIIGDSAEEL 146 (967)
T ss_pred ccccccchhhhcce-EEEEEcCceEEEEecccCceehh--------------------cCCCceEEEEeEEEEeccCcEE
Confidence 34445666666664 58888999999999988765432 112222 22244677888
Q ss_pred EEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE-EeecCCcCe
Q 001336 395 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY-IFEGHESPV 473 (1097)
Q Consensus 395 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~h~~~v 473 (1097)
++++|+.-+.|.+|+..... .. ..+.||.+.|.++.|+-||. ++++.|.|.++|+|++++++... +.-+|..+|
T Consensus 147 ~i~~gsv~~~iivW~~~~dn-~p--~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv 221 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDN-KP--IRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARV 221 (967)
T ss_pred EEEeccccccEEEEeccccC-Cc--ceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCccccccccee
Confidence 99999999999999987322 11 14889999999999999999 89999999999999999998776 777899999
Q ss_pred EEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCC-CCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC
Q 001336 474 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP-GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 550 (1097)
Q Consensus 474 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 550 (1097)
..++|.+. .+++++.|-+.++|+.+..... .+..| ...+..++..++...+++++.|+ .+++||+...
T Consensus 222 w~~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds----~lk~~~l~~r 290 (967)
T KOG0974|consen 222 WACCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDS----TLKLWDLNGR 290 (967)
T ss_pred EEEEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCc----chhhhhhhcc
Confidence 99999553 7999999999999976643333 44443 44799999999998999988654 5999987643
No 211
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=3e-15 Score=155.35 Aligned_cols=324 Identities=15% Similarity=0.198 Sum_probs=226.1
Q ss_pred eeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEe-ecCCcCeEEEeecccCCccEEEEEcCCCeEEEE
Q 001336 421 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499 (1097)
Q Consensus 421 ~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 499 (1097)
.|.+|.+.|..|.|...|. .|++|+.|..|.+||+..++....+ .+|...|....|.|..+...+++++.||.+++=
T Consensus 137 kL~~H~GcVntV~FN~~Gd--~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGD--VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred cccCCCCccceeeecccCc--eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 4889999999999999999 8999999999999999999888776 579999988889888888899999999998864
Q ss_pred EcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCC-CEEEE
Q 001336 500 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK-NRFLA 578 (1097)
Q Consensus 500 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~ 578 (1097)
.+.. ++.. +-...+..|.+ .+..++.-|+. .-|++
T Consensus 215 ~i~~---------------------------t~~~----------------e~t~rl~~h~g-~vhklav~p~sp~~f~S 250 (559)
T KOG1334|consen 215 EILE---------------------------TGYV----------------ENTKRLAPHEG-PVHKLAVEPDSPKPFLS 250 (559)
T ss_pred eecc---------------------------ccce----------------ecceecccccC-ccceeeecCCCCCcccc
Confidence 3221 1100 00111222333 67777777766 46888
Q ss_pred EeCCCcEEEEECCCCceEEEEecCCC-C---CCcceEEEcCCC-CEEEEEECCCcEEEEEcCCCceEEEEeccccccccc
Q 001336 579 AGDEFMIKFWDMDNVNLLASIDADGG-L---QASPCIRFNKEG-ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASR 653 (1097)
Q Consensus 579 ~~~dg~i~iwd~~~~~~~~~~~~~~~-~---~~v~~v~~s~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 653 (1097)
+++|+.+.-+|+..+.+...+..... . -..+.++.+|.. ..+++++.|..+++||...-... ...+ +.
T Consensus 251 ~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e--~~n~----~~- 323 (559)
T KOG1334|consen 251 CGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE--ENNG----VL- 323 (559)
T ss_pred cccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc--cccc----hh-
Confidence 99999999999987765554432211 1 145688889855 58999999999999987543110 0000 00
Q ss_pred ccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEecc
Q 001336 654 VASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRL 733 (1097)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 733 (1097)
-.+.|.. ++
T Consensus 324 -------------------~~f~p~h-------------------------l~--------------------------- 332 (559)
T KOG1334|consen 324 -------------------DKFCPHH-------------------------LV--------------------------- 332 (559)
T ss_pred -------------------hhcCCcc-------------------------cc---------------------------
Confidence 0011110 00
Q ss_pred CCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEE
Q 001336 734 PDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFA 813 (1097)
Q Consensus 734 ~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~ 813 (1097)
......|++++|+.++.-|++...|-.|.++.-..+ .|.......++ .........|......|..+-
T Consensus 333 --~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~----~G~~p~~~s~~------~~~~k~vYKGHrN~~TVKgVN 400 (559)
T KOG1334|consen 333 --EDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG----DGSEPDPSSPR------EQYVKRVYKGHRNSRTVKGVN 400 (559)
T ss_pred --ccCcccceeEEecCCccceeeeecccceEEeccccc----cCCCCCCCcch------hhccchhhcccccccccceee
Confidence 013457999999999888888888888888843221 11100000000 112222244422345577776
Q ss_pred Ec-cCCCEEEEEeC-CeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccce
Q 001336 814 LS-KNDSYVMSASG-GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE 881 (1097)
Q Consensus 814 ~s-~dg~~la~~sd-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~ 881 (1097)
|- |...|+++|+| |.|.||+-.+++.++-+.+...-|+|+.-+| --.+||+.+-|..|+||...+.+
T Consensus 401 FfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 401 FFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP-HLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred eccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC-CCchhhccCCccceeeecCCccc
Confidence 65 78899999996 8999999999999999998888999999999 77799999999999999875543
No 212
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=6.5e-13 Score=146.07 Aligned_cols=319 Identities=11% Similarity=0.100 Sum_probs=200.6
Q ss_pred CceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCC
Q 001336 539 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI 618 (1097)
Q Consensus 539 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 618 (1097)
++.|.+.|..+.+.+.++..... .-..+.|+|||+++++++.||.|.++|+.+++.+.++... .....+++++||+
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G---~~~~~i~~s~DG~ 90 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG---GNPRGIAVSPDGK 90 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S---SEEEEEEE--TTT
T ss_pred CCEEEEEECCCCeEEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC---CCcceEEEcCCCC
Confidence 45799999999999999987553 3445789999999999999999999999999999998753 2357899999999
Q ss_pred EEEEEE-CCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCC
Q 001336 619 LLAVST-NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSR 697 (1097)
Q Consensus 619 ~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1097)
+++++. .++.+.++|..+. +.++.+......
T Consensus 91 ~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~----------------------------------------------- 122 (369)
T PF02239_consen 91 YVYVANYEPGTVSVIDAETL-EPVKTIPTGGMP----------------------------------------------- 122 (369)
T ss_dssp EEEEEEEETTEEEEEETTT---EEEEEE--EE------------------------------------------------
T ss_pred EEEEEecCCCceeEeccccc-cceeeccccccc-----------------------------------------------
Confidence 988775 6899999999887 555544321100
Q ss_pred CccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeee-ccCcEEEEeccCCCCCCcc
Q 001336 698 NFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILAL-ASNAVHKLWKWPRNERNST 776 (1097)
Q Consensus 698 ~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~-~~dg~i~vw~~~~~~~~~~ 776 (1097)
......++.++..+|....++.. -+.+.|.+-|+..
T Consensus 123 -------------------------------------~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d------ 159 (369)
T PF02239_consen 123 -------------------------------------VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD------ 159 (369)
T ss_dssp -------------------------------------TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT------
T ss_pred -------------------------------------ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc------
Confidence 00023567778888888855544 4446666655442
Q ss_pred CccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEcCCCceeEEeCC----CCCCe
Q 001336 777 GKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMP----PPPAA 850 (1097)
Q Consensus 777 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~----~~~~i 850 (1097)
.. .+....+. .........|+|++++++++. ++.|-++|.++++.+..+.. |....
T Consensus 160 -------------~~--~~~~~~i~---~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~ 221 (369)
T PF02239_consen 160 -------------PK--NLKVTTIK---VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPG 221 (369)
T ss_dssp -------------SS--CEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTE
T ss_pred -------------cc--ccceeeec---ccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccccc
Confidence 10 11111111 245567889999999988876 68999999999887766532 33333
Q ss_pred EEE-------EEeCC-CCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEE----eCCCcEEEEE
Q 001336 851 TFL-------AFHPQ-DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS----GADSQLCVWS 918 (1097)
Q Consensus 851 ~~l-------~~sp~-~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~----~~Dg~i~iwd 918 (1097)
..+ .|... .+...++.-....+.+|+..+.+.++++....++ .-+..+|+++++... ...++|.++|
T Consensus 222 ~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 222 ANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp EEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred ccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence 322 12110 2223322333345667888889999999887676 778889999999987 4458899999
Q ss_pred cCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE---eCCeEEEEeCCCcceeeeee
Q 001336 919 TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV---HETQIAIYEAPKLECLKQFV 978 (1097)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~---~d~~v~vwd~~~~~~~~~~~ 978 (1097)
.++.+. ...+..+.. ..+.++.|++||+++.++ .++.|.+||..+.+.+..+.
T Consensus 301 ~~tl~~----~~~i~~~~~---~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 301 KKTLKV----VKTITPGPG---KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp CCGTEE----EE-HHHHHT-----EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CcCcce----eEEEeccCC---CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 988531 112211111 237899999999988874 34489999999999988876
No 213
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=3.1e-15 Score=153.53 Aligned_cols=197 Identities=21% Similarity=0.211 Sum_probs=154.3
Q ss_pred EEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeE
Q 001336 851 TFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFL 930 (1097)
Q Consensus 851 ~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~ 930 (1097)
.+++|+. ++..|++|+.||++|||+..+...+.....|.+.|.++.|||||++|++.+.| ..+||+..++-....+.-
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999 89999999999999999988877777888899999999999999999999999 799999999742221110
Q ss_pred eecCCCCCCccCCeEEEEcCCC---cE-EEE-E-eCCeEEEEeCCCcce-----eeeeeccCCCCCEEEEEEecCCCEEE
Q 001336 931 TIPNGRTASALADTRVQFHLDQ---TH-LLA-V-HETQIAIYEAPKLEC-----LKQFVPREASGPITHATYSCDSQSIY 999 (1097)
Q Consensus 931 ~~~~~~~~~~~~v~~l~~s~dg---~~-l~~-~-~d~~v~vwd~~~~~~-----~~~~~~~~h~~~v~~v~~s~dg~~l~ 999 (1097)
.... .....+.|+.|+ .+ +++ . .-+.|..||+..... ..+.. .-...|++++.|+||++++
T Consensus 226 --~~k~----~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~--~~~~siSsl~VS~dGkf~A 297 (398)
T KOG0771|consen 226 --FSKD----EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI--KRFKSISSLAVSDDGKFLA 297 (398)
T ss_pred --cccc----hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh--hccCcceeEEEcCCCcEEE
Confidence 1111 346778899887 33 333 2 345677666643221 11111 1245899999999999999
Q ss_pred EEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCC
Q 001336 1000 VAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1066 (1097)
Q Consensus 1000 s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~ 1066 (1097)
.|+.||.|.|++..+.+.. .+.+..|...|+.+ .|+| |.+.+++.+.|.+.++..+..
T Consensus 298 lGT~dGsVai~~~~~lq~~------~~vk~aH~~~VT~l--tF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAKSLQRL------QYVKEAHLGFVTGL--TFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EeccCCcEEEEEeceeeee------EeehhhheeeeeeE--EEcC-CcCcccccccCCceeEEEEee
Confidence 9999999999999887765 35566799999977 8999 688999999999999999886
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=2.4e-13 Score=136.07 Aligned_cols=285 Identities=15% Similarity=0.169 Sum_probs=188.5
Q ss_pred CCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc-CCCEEE
Q 001336 319 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTLFG 397 (1097)
Q Consensus 319 ~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~la 397 (1097)
+..+..++|++.-. -+|++..|-.|+|||-+...... +-..-...|+|++|-| .++.|+
T Consensus 98 ~~dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~-------------------Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTK-------------------LKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hcceeeEeechhhh-hhhhhccCcEEEEeccCCCCCce-------------------ecchhhcceeEEEeccCCcceee
Confidence 44677899998544 35788999999999987632211 1223456899999999 456778
Q ss_pred EEECCCEEEEEEccCCeeee-----------eeeeeecccCcEEEEEEecCCCcEEEEEEeC-CCcEEEEECCCCceeEE
Q 001336 398 VAYSKHIVHLYTYHGGDELR-----------NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DRVIKVWDAVTGTKQYI 465 (1097)
Q Consensus 398 s~~~dg~i~iwd~~~~~~~~-----------~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~-d~~i~iwd~~~~~~~~~ 465 (1097)
.|+..| |.||......... ....-.|| .+|+++.|.+||. .+++++. |..|+|||..+|.++..
T Consensus 158 vgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 158 VGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccc
Confidence 887777 9999875321111 11123355 6899999999999 6888875 56899999999987765
Q ss_pred eecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEE
Q 001336 466 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 545 (1097)
Q Consensus 466 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 545 (1097)
...-.+.+.-+.| +|||.+|+++.-|+..++|+....-.........+.|...+|+|+|++|+..... + -.+|
T Consensus 234 ~~~glgg~slLkw--SPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---s--p~ly 306 (445)
T KOG2139|consen 234 IPKGLGGFSLLKW--SPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---S--PRLY 306 (445)
T ss_pred cccCCCceeeEEE--cCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---C--ceEE
Confidence 5445567888888 5566899999999999999655444333344445589999999999988876632 2 1222
Q ss_pred eCC----CCe-----------eeEEe------cC--CCCcceEEEEEcCCCCEEEEEeCCC--------cEEEEECCCCc
Q 001336 546 NES----EGA-----------VKRTY------HG--LGKRSVGVVQFDTTKNRFLAAGDEF--------MIKFWDMDNVN 594 (1097)
Q Consensus 546 d~~----~~~-----------~~~~~------~~--~~~~~v~~~~~~~~~~~l~~~~~dg--------~i~iwd~~~~~ 594 (1097)
.+. ... ++..+ .+ .-.+...+++|.|.|+++++.-..+ .|.+||....-
T Consensus 307 sl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 307 SLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred EEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 221 110 01111 11 0123678899999999999875333 46778876554
Q ss_pred eEEEEe-cCCCCCCcceEEEcC---CCCEEEEEECCCcEEEEEc
Q 001336 595 LLASID-ADGGLQASPCIRFNK---EGILLAVSTNDNGIKILAN 634 (1097)
Q Consensus 595 ~~~~~~-~~~~~~~v~~v~~s~---~~~~l~s~~~dg~i~iw~~ 634 (1097)
.+.... +......-..++|+| ++.+|..+-..|.+.-|.+
T Consensus 387 ~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 387 PVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred ceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 443331 111111234677776 6677777777787777664
No 215
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.62 E-value=6.2e-11 Score=122.98 Aligned_cols=145 Identities=12% Similarity=0.038 Sum_probs=109.8
Q ss_pred CccceEEEEEccCCceeeeeccCc-EEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEcc
Q 001336 738 TAMRVSRLIYTNSGLAILALASNA-VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK 816 (1097)
Q Consensus 738 ~~~~i~~l~~spdg~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 816 (1097)
+...|.-..+.-+++-++.|..|| .+.||+.. +++..... ..-+.|.++..++
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~----------------------~~e~kr~e----~~lg~I~av~vs~ 411 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD----------------------GGEVKRIE----KDLGNIEAVKVSP 411 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecC----------------------CceEEEee----CCccceEEEEEcC
Confidence 445566667777777888898888 78887554 33322221 1457899999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCC----cEEEEEcccceEEEEeccccc
Q 001336 817 NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDS----SIQIYNVRVDEVKTKLKGHQK 891 (1097)
Q Consensus 817 dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg----~v~vwd~~~~~~~~~l~~h~~ 891 (1097)
||++++++. ...|.+.|++++.....-+...+-|+..+|+| +++++|.+--+| .|++||+.+++....-. ..+
T Consensus 412 dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta 489 (668)
T COG4946 412 DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA 489 (668)
T ss_pred CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc
Confidence 999999998 57899999999987666565667799999999 999999988776 79999999888654332 333
Q ss_pred CeEEEEEecCCCEEEEEeC
Q 001336 892 RITGLAFSNTLNVLVSSGA 910 (1097)
Q Consensus 892 ~V~~l~~s~dg~~l~s~~~ 910 (1097)
.=.+-+|.||+++|.--+.
T Consensus 490 ~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 490 YDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred cccCcccCCCCcEEEEEec
Confidence 3456789999998886553
No 216
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.62 E-value=9.5e-14 Score=137.02 Aligned_cols=234 Identities=18% Similarity=0.219 Sum_probs=178.1
Q ss_pred CCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEEC-CC
Q 001336 381 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA-VT 459 (1097)
Q Consensus 381 ~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~-~~ 459 (1097)
..+|+|.+|++|+..+|.+.....|.||.....+......++..|...|+.++|+|..+ .|++|+.|...++|.. ..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCCC
Confidence 46899999999999999999999999999998886777778999999999999999998 6999999999999998 44
Q ss_pred Cc--eeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCce----eeecCCCCceEEEEEccCCCEEEEee
Q 001336 460 GT--KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR----VDYDAPGHSSTMMAYSADGARLFSCG 533 (1097)
Q Consensus 460 ~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~ 533 (1097)
++ +...+..+....+++.|+|.. +.+++|+....|.+|-++..+.= .........|.++.|+|++-+|++++
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 43 344666789999999996655 78999999999999988754432 22334456799999999999999998
Q ss_pred eCCCCCceEEEEeC-----CC-------------CeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-
Q 001336 534 TNKEGESYLVEWNE-----SE-------------GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN- 594 (1097)
Q Consensus 534 ~~~~~~~~i~~wd~-----~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~- 594 (1097)
.|+ ..+++.. ++ |+++..+. ...+.+..+.|+|+|+.|+-.+.|..+.+-|.....
T Consensus 166 ~D~----k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~ 240 (361)
T KOG1523|consen 166 TDG----KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE 240 (361)
T ss_pred cCc----ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch
Confidence 654 3555432 11 23334443 233489999999999999999999999999987654
Q ss_pred eEEEEecCCCCCCcceEEEcCCCCEEEEEECC
Q 001336 595 LLASIDADGGLQASPCIRFNKEGILLAVSTND 626 (1097)
Q Consensus 595 ~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d 626 (1097)
.+..+... .-+..++.|-.+... +.++.|
T Consensus 241 ~v~~~~~~--~lP~ls~~~ise~~v-v~ag~~ 269 (361)
T KOG1523|consen 241 RVQSVATA--QLPLLSVSWISENSV-VAAGYD 269 (361)
T ss_pred hccchhhc--cCCceeeEeecCCce-eecCCC
Confidence 33333221 245567777655443 334444
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.62 E-value=1e-12 Score=144.63 Aligned_cols=319 Identities=13% Similarity=0.119 Sum_probs=197.8
Q ss_pred EEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEE
Q 001336 487 IFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGV 566 (1097)
Q Consensus 487 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 566 (1097)
+++-..++.|.+.|..+.+....+......-..+.++|||+++++++. ++.|.++|+.+++.+.++.... ....
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~--~~~~ 82 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG--NPRG 82 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS--EEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC--Ccce
Confidence 456667899999999988888777765544456789999999999864 3479999999999999887654 4678
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCC-----CCCCcceEEEcCCCCEEEEEE-CCCcEEEEEcCCCce
Q 001336 567 VQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADG-----GLQASPCIRFNKEGILLAVST-NDNGIKILANADGIR 639 (1097)
Q Consensus 567 ~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~s~~-~dg~i~iw~~~~~~~ 639 (1097)
++++++|++++++. .++.+.++|.++.+++..+...+ ....+..+..+|....++..- +.+.|.+.|..+...
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 99999999999887 78999999999999999886432 123456777778777555444 447777777655411
Q ss_pred EEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccc
Q 001336 640 LLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKL 719 (1097)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~ 719 (1097)
......
T Consensus 163 ~~~~~i-------------------------------------------------------------------------- 168 (369)
T PF02239_consen 163 LKVTTI-------------------------------------------------------------------------- 168 (369)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred cceeee--------------------------------------------------------------------------
Confidence 111000
Q ss_pred cccCCCceeeEeccCCCcCccceEEEEEccCCceeeee-ccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccc
Q 001336 720 TEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILAL-ASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTN 798 (1097)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 798 (1097)
. .........|+|++++++++ .....+.++|..+... +..+..|...
T Consensus 169 ------------~-----~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-------------v~~i~~g~~p-- 216 (369)
T PF02239_consen 169 ------------K-----VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-------------VALIDTGKKP-- 216 (369)
T ss_dssp ------------E-------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-------------EEEEE-SSSB--
T ss_pred ------------c-----ccccccccccCcccceeeecccccceeEEEeeccceE-------------EEEeeccccc--
Confidence 0 11234467899999987665 4466788887654311 1111111111
Q ss_pred cCCCCCCCCCeeEE---------EEccCCCEEEEE-eCCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEE--
Q 001336 799 DISDTNPEDAVPCF---------ALSKNDSYVMSA-SGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIG-- 866 (1097)
Q Consensus 799 ~~~~~~h~~~v~~l---------~~s~dg~~la~~-sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g-- 866 (1097)
|..++..+ +.+..+...++. +.+.+.+|+..+++.++++....++ .-+..+| +++++.+.
T Consensus 217 ------~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~ 288 (369)
T PF02239_consen 217 ------HPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTF 288 (369)
T ss_dssp ------EETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-T
T ss_pred ------cccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeecc
Confidence 12222211 122334443222 3556778999999999999876666 7888899 89999887
Q ss_pred --ECCCcEEEEEcccceEEEEecccc-cCeEEEEEecCCCEEEEEeCCC--cEEEEEcCCCccc
Q 001336 867 --MEDSSIQIYNVRVDEVKTKLKGHQ-KRITGLAFSNTLNVLVSSGADS--QLCVWSTDGWEKQ 925 (1097)
Q Consensus 867 --~~dg~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~l~s~~~Dg--~i~iwd~~~~~~~ 925 (1097)
...++|.++|..+.+.+..+.... ..+..+.|++||+.+..+..++ .|.+||.++.+..
T Consensus 289 ~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 289 LNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp T-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred CCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 455899999999998888876433 3589999999999776555443 6999999996643
No 218
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.61 E-value=2.5e-09 Score=130.75 Aligned_cols=509 Identities=12% Similarity=0.121 Sum_probs=291.6
Q ss_pred CCCCCeEEEEEccCCCEEEEEECCCEEEEE----EccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001336 379 DYTASVNRVMWSPDGTLFGVAYSKHIVHLY----TYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 454 (1097)
Q Consensus 379 ~h~~~V~~v~~spd~~~las~~~dg~i~iw----d~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~i 454 (1097)
...+.|.++.|-++...|+.+..+|.|.+. +..+.. +.. ...-...|.+++||||+. +|+..+.++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~---VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEI---VGSVDSGILAASWSPDEE--LLALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEE---EEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence 345789999999999999999999999999 554433 222 333567899999999999 7777777888888
Q ss_pred EECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCC----------c----eeeecCCCCceEEE
Q 001336 455 WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG----------S----RVDYDAPGHSSTMM 520 (1097)
Q Consensus 455 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----------~----~~~~~~~~~~v~~~ 520 (1097)
.+ .+...+.+..-+.... .. ...++.|..+.=.-|.=..++ . ...+. ....-..+
T Consensus 147 mt-~~fd~i~E~~l~~~~~-------~~--~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~I 215 (928)
T PF04762_consen 147 MT-RDFDPISEVPLDSDDF-------GE--SKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRI 215 (928)
T ss_pred Ee-ccceEEEEeecCcccc-------CC--CceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEE
Confidence 76 6666666554332211 00 122332222111111000000 0 01111 23345678
Q ss_pred EEccCCCEEEEeeeCCC-C-CceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCce
Q 001336 521 AYSADGARLFSCGTNKE-G-ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD---EFMIKFWDMDNVNL 595 (1097)
Q Consensus 521 ~~s~~~~~l~~~~~~~~-~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~ 595 (1097)
+|-.||.++++.+.+.. + ...+++|+-+ |.+..+-+...+ --..++|-|.|++|++... ...|.+|..+. -.
T Consensus 216 SWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~g-Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG-Lr 292 (928)
T PF04762_consen 216 SWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDG-LEGALSWRPSGNLIASSQRLPDRHDVVFFERNG-LR 292 (928)
T ss_pred EECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCC-ccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC-cE
Confidence 99999999999886333 2 5789999965 665444442222 4456899999999998763 45677887553 33
Q ss_pred EEEEecC--CCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCcc
Q 001336 596 LASIDAD--GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANA 673 (1097)
Q Consensus 596 ~~~~~~~--~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1097)
-..+... .....|..+.|++|+..||..-.|. |.+|-..+-+-.++..-.
T Consensus 293 hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~--------------------------- 344 (928)
T PF04762_consen 293 HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIR--------------------------- 344 (928)
T ss_pred eeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEE---------------------------
Confidence 3333322 2355789999999999999987664 999988776433332110
Q ss_pred ccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccC-Cc
Q 001336 674 NVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS-GL 752 (1097)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-g~ 752 (1097)
++ ....+..+.|+|. ..
T Consensus 345 -----------------------------------------------------------~~---~~~~~~~~~Wdpe~p~ 362 (928)
T PF04762_consen 345 -----------------------------------------------------------FS---SSESVNFVKWDPEKPL 362 (928)
T ss_pred -----------------------------------------------------------cc---CCCCCCceEECCCCCC
Confidence 00 1112223666664 33
Q ss_pred eeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEcc-CCCEEEEEeCCeEEE
Q 001336 753 AILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK-NDSYVMSASGGKISL 831 (1097)
Q Consensus 753 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~la~~sdg~i~i 831 (1097)
.|...+.+|.+..+++. |+...+.. .+| |...+++..+.++.+
T Consensus 363 ~L~v~t~~g~~~~~~~~------------------~~v~~s~~------------------~~~~D~g~vaVIDG~~lll 406 (928)
T PF04762_consen 363 RLHVLTSNGQYEIYDFA------------------WDVSRSPG------------------SSPNDNGTVAVIDGNKLLL 406 (928)
T ss_pred EEEEEecCCcEEEEEEE------------------EEEEecCC------------------CCccCceEEEEEeCCeEEE
Confidence 45566665666655432 11111110 011 222344444566777
Q ss_pred EEcCCCc-----eeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceE--------EEEec----------c
Q 001336 832 FNMMTFK-----TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV--------KTKLK----------G 888 (1097)
Q Consensus 832 wd~~~~~-----~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~--------~~~l~----------~ 888 (1097)
-.+.... +...+. -...|.+++|++ ++..+|+-..||.|.+|....... ...+. .
T Consensus 407 Tpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (928)
T PF04762_consen 407 TPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSEL 484 (928)
T ss_pred ecccccCCCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccccccccccccc
Confidence 7665432 123333 357899999999 676789999999999998644211 11111 1
Q ss_pred cccCeEEEEEecCCCEEEEEeCC---CcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-EeCCeEE
Q 001336 889 HQKRITGLAFSNTLNVLVSSGAD---SQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIA 964 (1097)
Q Consensus 889 h~~~V~~l~~s~dg~~l~s~~~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~~d~~v~ 964 (1097)
-...+..++|..+...++....+ ..+.++++...+.. .......... ..+..+...++...++. ..+|.+.
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~q~~~G~v~ 559 (928)
T PF04762_consen 485 PLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENS-ASVESSTEVD----GVVLIISSSPDSGSLYIQTNDGKVF 559 (928)
T ss_pred ccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCc-eeEEEEeccC----ceEEEEeeCCCCcEEEEEECCCEEE
Confidence 23457888998888777766654 57888887543211 1111111111 23444445555543444 6788888
Q ss_pred EEeCCCccee-eeeeccCCCCCEEEEEEecCCC---EEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEE
Q 001336 965 IYEAPKLECL-KQFVPREASGPITHATYSCDSQ---SIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVI 1040 (1097)
Q Consensus 965 vwd~~~~~~~-~~~~~~~h~~~v~~v~~s~dg~---~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i 1040 (1097)
.++....... ..+. . .-.-..++...+.. .++.-+..|.+++ +++.++ ..+++..+
T Consensus 560 ~~~~~~~~~~~~~fp--~-~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la-------------~~~tSF~v 619 (928)
T PF04762_consen 560 QLSSDGELSQIVKFP--Q-PCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA-------------SNCTSFAV 619 (928)
T ss_pred EeecCCCccccccCC--C-CCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEe-------------cCCceEEE
Confidence 7766643322 1222 1 11222233333333 3443344444442 333331 33555544
Q ss_pred EEcCCCCCEEEEEecCCcEEEEecC
Q 001336 1041 AGNPTDPNQFALGLTDGGVYIIEPL 1065 (1097)
Q Consensus 1041 ~~~p~~~~~l~s~~~Dg~v~~W~~~ 1065 (1097)
. +.+|+.......+++..+.
T Consensus 620 ~-----~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 620 T-----DSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred E-----cCEEEEEecCceEEEEECc
Confidence 3 4566667777889999998
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=3.1e-13 Score=135.37 Aligned_cols=261 Identities=12% Similarity=0.133 Sum_probs=164.1
Q ss_pred CccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccC
Q 001336 738 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 817 (1097)
Q Consensus 738 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 817 (1097)
....|++++|-|.+..-++.+-.+.|.+|........-. .++ -..++.. ..+.+.+| .+|+.|+|.+|
T Consensus 139 sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r-------~~~--~~s~~~~--qvl~~pgh-~pVtsmqwn~d 206 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR-------NIR--MMSTHHL--QVLQDPGH-NPVTSMQWNED 206 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc-------ccc--cccccch--hheeCCCC-ceeeEEEEcCC
Confidence 346789999999876555555566789997663211000 000 0011111 11222234 88999999999
Q ss_pred CCEEEEEe--CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEccc-ceEEEEecccccCeE
Q 001336 818 DSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-DEVKTKLKGHQKRIT 894 (1097)
Q Consensus 818 g~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~-~~~~~~l~~h~~~V~ 894 (1097)
|..+++++ +..|.|||.+++..+.......+.++-+.||| |+.+|..+.-|+..++|+... ..... ..--++.|.
T Consensus 207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~er-w~lgsgrvq 284 (445)
T KOG2139|consen 207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKER-WILGSGRVQ 284 (445)
T ss_pred CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecc-eeccCCcee
Confidence 99999998 67899999999887766655667899999999 899999999999999996543 33322 223345899
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCCCcccc--------eeeE--------eecCCCCCCccCCeEEEEcCCCcEEEEE
Q 001336 895 GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQA--------SKFL--------TIPNGRTASALADTRVQFHLDQTHLLAV 958 (1097)
Q Consensus 895 ~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~--------~~~~--------~~~~~~~~~~~~v~~l~~s~dg~~l~~~ 958 (1097)
...|+|+|++|..+.. |.-++|.+...+... ...+ .+..+.....+++.+++|+|.|.+||+.
T Consensus 285 tacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~ 363 (445)
T KOG2139|consen 285 TACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVI 363 (445)
T ss_pred eeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEE
Confidence 9999999987665443 223444433211100 0111 1112222234678999999999999996
Q ss_pred eCC---------eEEEEeCCCcceeeeeecc-CCCCCEEEEEEec---CCCEEEEEecCCeEEEEeCC
Q 001336 959 HET---------QIAIYEAPKLECLKQFVPR-EASGPITHATYSC---DSQSIYVAFEEGSVGVLTAS 1013 (1097)
Q Consensus 959 ~d~---------~v~vwd~~~~~~~~~~~~~-~h~~~v~~v~~s~---dg~~l~s~s~Dg~v~vwd~~ 1013 (1097)
..+ .|.+||....-.+....++ ........++|.| +|.+|..+=..|.+.-|++.
T Consensus 364 fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 364 FKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 333 3566776654333322110 0122244556654 67777777777888887764
No 220
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.60 E-value=1e-11 Score=141.71 Aligned_cols=199 Identities=16% Similarity=0.152 Sum_probs=155.8
Q ss_pred CcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCe--EEEeecccCCccEEEEEcCCCeEEEEEcCCC
Q 001336 427 GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV--YSICPHHKENIQFIFSTATDGKIKAWLYDNL 504 (1097)
Q Consensus 427 ~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 504 (1097)
+.|....+..+.+ .++.++.++.+-+||...+.....+....... .++-+-...+.-++++|+.-+.|.+|+....
T Consensus 88 ~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 88 DWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred ccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc
Confidence 3444456666677 68888889999999998887776665322211 1122222444478999999999999999866
Q ss_pred CceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeE-EecCCCCcceEEEEEcCCCCEEEEEeCCC
Q 001336 505 GSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR-TYHGLGKRSVGVVQFDTTKNRFLAAGDEF 583 (1097)
Q Consensus 505 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 583 (1097)
+....+.+|.+.|.++.++.||+++++++.|. .+++|++.+.+... ..-+|.. .++.++|.|+ .++++++|.
T Consensus 166 n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDR----siRlW~i~s~~~~~~~~fgHsa-Rvw~~~~~~n--~i~t~gedc 238 (967)
T KOG0974|consen 166 NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDR----SIRLWPIDSREVLGCTGFGHSA-RVWACCFLPN--RIITVGEDC 238 (967)
T ss_pred CCcceecccCCceEEEEEccCCcEEEEEecCc----ceeeeecccccccCcccccccc-eeEEEEeccc--eeEEeccce
Confidence 66666889999999999999999999999755 69999999998776 5566766 8999999998 999999999
Q ss_pred cEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001336 584 MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 636 (1097)
Q Consensus 584 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~ 636 (1097)
+.++|+.+ ++.+..+..|. ...+..++..++...+++++.|+.+++|+...
T Consensus 239 tcrvW~~~-~~~l~~y~~h~-g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 239 TCRVWGVN-GTQLEVYDEHS-GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEEEecc-cceehhhhhhh-hcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99999765 44445666554 34688999999999999999999999999755
No 221
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=3.2e-13 Score=155.30 Aligned_cols=265 Identities=16% Similarity=0.199 Sum_probs=181.9
Q ss_pred CceEEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCcee---eeeeeeEeeccccCccccccccCCCCCCe
Q 001336 309 PKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERI---AVKSFKVWELGACSMPLQASLSSDYTASV 384 (1097)
Q Consensus 309 ~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 384 (1097)
.+.++..+. |...|..++.++....++++||.||+|+|||...-..- .+-.+ .+......+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~l---------------tys~~~sr~ 1101 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSEL---------------TYSPEGSRV 1101 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeE---------------EEeccCCce
Confidence 456666776 99999999999888668899999999999998642211 11010 123356789
Q ss_pred EEEEEccCCCEEEEEECCCEEEEEEccCC--eeee--e--eeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECC
Q 001336 385 NRVMWSPDGTLFGVAYSKHIVHLYTYHGG--DELR--N--HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 458 (1097)
Q Consensus 385 ~~v~~spd~~~las~~~dg~i~iwd~~~~--~~~~--~--~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~ 458 (1097)
.++.+.+.+..+|+++.||.|++.+++.. +... + ...+..-...|..-+|....+...++.+..-+.|..||+.
T Consensus 1102 ~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1102 EKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred EEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch
Confidence 99999999999999999999999998762 1111 0 0011122223444455444333368888889999999998
Q ss_pred CCceeEEee--cCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCC-CceEEEEEcc---CCCEEEEe
Q 001336 459 TGTKQYIFE--GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSA---DGARLFSC 532 (1097)
Q Consensus 459 ~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~---~~~~l~~~ 532 (1097)
......+++ ...+.|++++. ++.+++++.|...|.+.+||++-......+.... .++..+..+| .....+++
T Consensus 1182 ~~~~~w~lk~~~~hG~vTSi~i--dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~ 1259 (1431)
T KOG1240|consen 1182 MRHDAWRLKNQLRHGLVTSIVI--DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSA 1259 (1431)
T ss_pred hhhhHHhhhcCccccceeEEEe--cCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEe
Confidence 776555443 34577999998 5566899999999999999999877766655433 3666666554 44566666
Q ss_pred eeCCCCCceEEEEeCCCCeeeEEecCCCC------------------cceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001336 533 GTNKEGESYLVEWNESEGAVKRTYHGLGK------------------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 592 (1097)
Q Consensus 533 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 592 (1097)
+.. +.+.|.+|++.+|.....+-.... ......++...+..+++|+.|..|+.||...
T Consensus 1260 ~~~--~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1260 GSS--SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred ccc--CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 542 355699999999866655533211 0111233444557899999999999999754
No 222
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=8.3e-14 Score=159.22 Aligned_cols=214 Identities=14% Similarity=0.093 Sum_probs=148.8
Q ss_pred CCCCeeEEEEccCCCEEEEEe-C---CeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEE-CCCcEEEE--Ec
Q 001336 805 PEDAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM-EDSSIQIY--NV 877 (1097)
Q Consensus 805 h~~~v~~l~~s~dg~~la~~s-d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~-~dg~v~vw--d~ 877 (1097)
+...+..++|||||+.|+..+ + ..|++||+.+++.... ....+....++|+| |++.|+++. .+|.+.|| |+
T Consensus 202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSP-DGSRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECC-CCCEEEEEEecCCcEEEEEEEC
Confidence 667899999999999999876 3 3699999988754322 11223345789999 888777764 68866555 55
Q ss_pred ccceEEEEecccccCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEE
Q 001336 878 RVDEVKTKLKGHQKRITGLAFSNTLNVLVSSG-ADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL 956 (1097)
Q Consensus 878 ~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 956 (1097)
.+++ ...+..|...+....|+|||+.|+.++ .++...||++....... ..+ .+. . ....|+|||++|+
T Consensus 280 ~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l----~~~---~--~~~~~SpDG~~ia 348 (429)
T PRK01742 280 NGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLV----GGR---G--YSAQISADGKTLV 348 (429)
T ss_pred CCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe----cCC---C--CCccCCCCCCEEE
Confidence 5555 455666777788999999999877555 57888888875432111 111 111 1 3468999999998
Q ss_pred EEeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCC--CCceeeeeCCCCcCCCCCCCc
Q 001336 957 AVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAS--TLRLRCRINPTAYLPTNPSLR 1034 (1097)
Q Consensus 957 ~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~--~~~~~~~~~~~~~~~~~h~~~ 1034 (1097)
......+.+||+.+++...... .+ ....+.|+|||++|+.++.++.+.+|++. +|+...++. +|.+.
T Consensus 349 ~~~~~~i~~~Dl~~g~~~~lt~--~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~-------~~~g~ 417 (429)
T PRK01742 349 MINGDNVVKQDLTSGSTEVLSS--TF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP-------GSDGQ 417 (429)
T ss_pred EEcCCCEEEEECCCCCeEEecC--CC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc-------CCCCC
Confidence 8655667779999887543221 21 23567899999999999999999988863 566665554 34455
Q ss_pred eeeEEEEEcC
Q 001336 1035 VYPLVIAGNP 1044 (1097)
Q Consensus 1035 v~~l~i~~~p 1044 (1097)
+... +|+|
T Consensus 418 ~~~p--~wsp 425 (429)
T PRK01742 418 VKFP--AWSP 425 (429)
T ss_pred CCCc--ccCC
Confidence 5544 7777
No 223
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=3e-12 Score=126.65 Aligned_cols=238 Identities=14% Similarity=0.172 Sum_probs=168.6
Q ss_pred CeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCc--EEEEEEecCCCcEEEEEEeCC------CcEEE
Q 001336 383 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGS--VNDLAFSYPNKQLSVVTCGED------RVIKV 454 (1097)
Q Consensus 383 ~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~--V~~l~~s~d~~~~~l~s~s~d------~~i~i 454 (1097)
...+++|+.|...+++|..+| .+||+.+--++.. .-.-+.+. +.-+-| -.+. +.+.||.+ +.|.|
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLf--R~N~-laLVGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLF--RSNY-LALVGGGSRPKYPPNKVII 79 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhh--hhce-EEEecCCCCCCCCCceEEE
Confidence 455599999999999999888 7999987532211 11122222 222333 2343 33344433 48999
Q ss_pred EECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcC-CCCceeeecCCCC--ceEEEEEccCCCEEEE
Q 001336 455 WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD-NLGSRVDYDAPGH--SSTMMAYSADGARLFS 531 (1097)
Q Consensus 455 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~ 531 (1097)
||-...+++.++. ...+|.++.+. . ..|+.. ..+.|.+|.+. +.+....+..... ...+++-..+-.+|+.
T Consensus 80 WDD~k~~~i~el~-f~~~I~~V~l~--r--~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 80 WDDLKERCIIELS-FNSEIKAVKLR--R--DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAF 153 (346)
T ss_pred EecccCcEEEEEE-eccceeeEEEc--C--CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEc
Confidence 9977888888886 67889999884 3 245444 35899999887 4444444443332 3333333333334444
Q ss_pred eeeCCCCCceEEEEeCCCCee--eEEecCCCCcceEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceEEEEecCCCCCCc
Q 001336 532 CGTNKEGESYLVEWNESEGAV--KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM-IKFWDMDNVNLLASIDADGGLQAS 608 (1097)
Q Consensus 532 ~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v 608 (1097)
-| ...+.|.+-|+...+. ...+..|.. .|.+++.+-+|..++++|..|+ |+|||..+|+++..+.-......|
T Consensus 154 Pg---~k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 154 PG---FKTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred CC---CccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 33 2356799999876655 467778876 9999999999999999998887 799999999999999755556679
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 609 PCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 609 ~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
.+++|||+..+||++|+.|++.|+.+...
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999999988664
No 224
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.57 E-value=3e-10 Score=118.02 Aligned_cols=526 Identities=13% Similarity=0.112 Sum_probs=281.7
Q ss_pred ceEEEEeecCCCeeEEEEccCCCeEEEE----E--eCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCC
Q 001336 310 KTVVMTLNQGSAVKSMDFHPVQQILLVV----G--TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 383 (1097)
Q Consensus 310 ~~~~~~~~h~~~V~~v~fspdg~~lla~----g--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 383 (1097)
.+..+...+-+-|+...|+|||+.++.+ | ...+.+.+.+.+.|+.... + .+ | ..
T Consensus 69 g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi-T----------------yf-G--r~ 128 (668)
T COG4946 69 GKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI-T----------------YF-G--RR 128 (668)
T ss_pred CCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE-E----------------Ee-c--cc
Confidence 4445555578889999999999987552 2 2334677777788876442 1 12 2 23
Q ss_pred eEE-EEEccCCCEEEEEECCCEE----EEEEccCCee-eeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCC-------
Q 001336 384 VNR-VMWSPDGTLFGVAYSKHIV----HLYTYHGGDE-LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR------- 450 (1097)
Q Consensus 384 V~~-v~~spd~~~las~~~dg~i----~iwd~~~~~~-~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~------- 450 (1097)
-+. .-|+|||+.+++...-.-. .+|.+..... ..+ | .-++.+.+.+- ||. ++.|-..-
T Consensus 129 fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~---L--nlGpathiv~~-dg~---ivigRntydLP~WK~ 199 (668)
T COG4946 129 FTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEP---L--NLGPATHIVIK-DGI---IVIGRNTYDLPHWKG 199 (668)
T ss_pred cceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeee---c--cCCceeeEEEe-CCE---EEEccCcccCccccc
Confidence 333 4599999999887553322 3444432211 111 1 23445555553 342 33332111
Q ss_pred -----cEEEEECCC-CceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCC--ceEEEEE
Q 001336 451 -----VIKVWDAVT-GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH--SSTMMAY 522 (1097)
Q Consensus 451 -----~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~ 522 (1097)
.=++|--.. |+.-..+-.-.+.|.+-.+ -.+ +.......+|.=.+|..+-...-. ..|.. .-.+-..
T Consensus 200 YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmI--V~~-RvYFlsD~eG~GnlYSvdldGkDl--rrHTnFtdYY~R~~ 274 (668)
T COG4946 200 YKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMI--VGE-RVYFLSDHEGVGNLYSVDLDGKDL--RRHTNFTDYYPRNA 274 (668)
T ss_pred ccCCccceEEEEecCCcceeeeeecCCCcCCceE--Ecc-eEEEEecccCccceEEeccCCchh--hhcCCchhcccccc
Confidence 123443222 2122222222222332221 111 222333444444444433222111 11111 2233345
Q ss_pred ccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecC---C---CCcc-eEE---E-EEcC-CCCEEEEEeCCCcEEEEEC
Q 001336 523 SADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG---L---GKRS-VGV---V-QFDT-TKNRFLAAGDEFMIKFWDM 590 (1097)
Q Consensus 523 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~---~~~~-v~~---~-~~~~-~~~~l~~~~~dg~i~iwd~ 590 (1097)
+.||+.++... .+-|.+||..+..+.+.--+ . .... +.- + .|++ +|++++..|. |+..+.+.
T Consensus 275 nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~ 348 (668)
T COG4946 275 NSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRP 348 (668)
T ss_pred CCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECC
Confidence 67999888753 22499999887654332211 0 0000 100 1 1222 5677777775 67777776
Q ss_pred CCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCC-cEEEEEcCCCceEEEEecccccccccccccccccCCcccccc
Q 001336 591 DNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN-GIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFG 669 (1097)
Q Consensus 591 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1097)
..+-.++. ++...|.-..+..++.-++.|..|| .+-|++..++. .+.+.
T Consensus 349 ~~~~~iqv----~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~e------------------------ 398 (668)
T COG4946 349 WDGYSIQV----GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRIE------------------------ 398 (668)
T ss_pred CCCeeEEc----CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEee------------------------
Confidence 66655443 2244577777877888889999998 89999988762 11111
Q ss_pred cCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEcc
Q 001336 670 SANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTN 749 (1097)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 749 (1097)
..-+.|.++..++
T Consensus 399 -------------------------------------------------------------------~~lg~I~av~vs~ 411 (668)
T COG4946 399 -------------------------------------------------------------------KDLGNIEAVKVSP 411 (668)
T ss_pred -------------------------------------------------------------------CCccceEEEEEcC
Confidence 1346788999999
Q ss_pred CCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CC-
Q 001336 750 SGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GG- 827 (1097)
Q Consensus 750 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg- 827 (1097)
||+.++++.....+.+.|+. +|.....+-. ..+-|+.++|+|+++++|-+- +|
T Consensus 412 dGK~~vvaNdr~el~vidid----------------------ngnv~~idkS---~~~lItdf~~~~nsr~iAYafP~gy 466 (668)
T COG4946 412 DGKKVVVANDRFELWVIDID----------------------NGNVRLIDKS---EYGLITDFDWHPNSRWIAYAFPEGY 466 (668)
T ss_pred CCcEEEEEcCceEEEEEEec----------------------CCCeeEeccc---ccceeEEEEEcCCceeEEEecCcce
Confidence 99999999888877776554 4443333221 467799999999999999886 54
Q ss_pred ---eEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEE--EecccccCeEEEE----E
Q 001336 828 ---KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKT--KLKGHQKRITGLA----F 898 (1097)
Q Consensus 828 ---~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~--~l~~h~~~V~~l~----~ 898 (1097)
.|+++|+.+++....- ...+.-.+-+|.| ++++|..-+.- -.|....+.+. .+..|+.+...+- .
T Consensus 467 ~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~-d~ryLYfLs~R----sLdPs~Drv~fnf~f~~vskPylv~L~~g~~ 540 (668)
T COG4946 467 YTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDP-DGRYLYFLSAR----SLDPSNDRVIFNFSFQRVSKPYLVVLGRGYY 540 (668)
T ss_pred eeeeEEEEecCCCeEEEec-CCcccccCcccCC-CCcEEEEEecc----ccCCCCCeeEEEEEEeeeccceEEEecCCCC
Confidence 5999999887765543 3555667789999 88888765521 12222222221 1122222211110 1
Q ss_pred ecCCCEEE-EEeCCCcEEEEEcCCCcccceeeEeecCCCCCCc-----cCCeEEEEcCCCcEEEE--E--eCCeEEEEeC
Q 001336 899 SNTLNVLV-SSGADSQLCVWSTDGWEKQASKFLTIPNGRTASA-----LADTRVQFHLDQTHLLA--V--HETQIAIYEA 968 (1097)
Q Consensus 899 s~dg~~l~-s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~v~~l~~s~dg~~l~~--~--~d~~v~vwd~ 968 (1097)
||-.+..- .-++++.+-+=+++. ....+.+.++..... +.|.-..+--.|.+-.. + .-|.+.+||+
T Consensus 541 sP~~q~p~~~~~ea~e~dle~ie~----r~eP~pVee~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydl 616 (668)
T COG4946 541 SPFNQPPDEANSEAGEVDLEGIED----RVEPFPVEEGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDL 616 (668)
T ss_pred ChhhcCchhcCccccceehhhhcc----cccccccCccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEec
Confidence 11111111 112333332222222 111222222211000 00111111112221111 2 3477899999
Q ss_pred CCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCC
Q 001336 969 PKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1014 (1097)
Q Consensus 969 ~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~ 1014 (1097)
++.+.... ...+.++..|+||+.+.. -.||.+++++++.
T Consensus 617 etkk~~e~------k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 617 ETKKVEEY------KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred chhhHHHH------hcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 87654322 358899999999999887 7899999999976
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=2e-12 Score=147.37 Aligned_cols=237 Identities=13% Similarity=0.106 Sum_probs=157.7
Q ss_pred eEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEEC---CCEEEEEEccCCeeeeee
Q 001336 343 DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS---KHIVHLYTYHGGDELRNH 419 (1097)
Q Consensus 343 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~---dg~i~iwd~~~~~~~~~~ 419 (1097)
.|.+||........ +..+...+.+.+|||||+.||..+. +..|.+|++.+|+. ...
T Consensus 180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-~~l 238 (429)
T PRK03629 180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQV 238 (429)
T ss_pred eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-EEc
Confidence 68888877554322 3446678999999999999987653 45799999988763 222
Q ss_pred eeeecccCcEEEEEEecCCCcEEEEEEeCCC--cEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcC-CCeE
Q 001336 420 LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DGKI 496 (1097)
Q Consensus 420 ~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i 496 (1097)
..+. +.+...+|+|||+. ++++.+.++ .|++||+.+++..... .+...+....| ++||+.|+..+. ++..
T Consensus 239 ~~~~---~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~w--SPDG~~I~f~s~~~g~~ 311 (429)
T PRK03629 239 ASFP---RHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTW--FPDSQNLAYTSDQAGRP 311 (429)
T ss_pred cCCC---CCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEE--CCCCCEEEEEeCCCCCc
Confidence 2233 33456899999995 233444444 5999999888765443 34455667777 556677766654 4555
Q ss_pred EEE--EcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCC
Q 001336 497 KAW--LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN 574 (1097)
Q Consensus 497 ~iw--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 574 (1097)
.+| |+..+.. ..+...........|+|||++++..+.++ +...|.+||+.++.... +.... ......|+|||+
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~~~~-Lt~~~--~~~~p~~SpDG~ 386 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQV-LTDTF--LDETPSIAPNGT 386 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCCeEE-eCCCC--CCCCceECCCCC
Confidence 555 5554433 23333444566789999999998876543 35579999998886443 33221 234578999999
Q ss_pred EEEEEeCCCc---EEEEECCCCceEEEEecCCCCCCcceEEEcC
Q 001336 575 RFLAAGDEFM---IKFWDMDNVNLLASIDADGGLQASPCIRFNK 615 (1097)
Q Consensus 575 ~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 615 (1097)
.|+.++.++. +++++++ |.....+..+ ...+...+|+|
T Consensus 387 ~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~--~~~~~~p~Wsp 427 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVSTD-GRFKARLPAT--DGQVKFPAWSP 427 (429)
T ss_pred EEEEEEcCCCceEEEEEECC-CCCeEECccC--CCCcCCcccCC
Confidence 9999887654 6777874 5555666543 45678888887
No 226
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=5.2e-15 Score=163.16 Aligned_cols=216 Identities=17% Similarity=0.233 Sum_probs=159.0
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEe-CCC-cEEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDR-VIKV 454 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s-~d~-~i~i 454 (1097)
+..|+...+|++||-+.+.|+.|+..|.|+++++.+|.... ...+|..+|+.+.-+.||.. +++.+ ... -..+
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~--~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST--QLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce--eeeeccccCchHHH
Confidence 67789999999999999999999999999999999998665 47789999999999999994 44443 333 5779
Q ss_pred EECC-CCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeec-CC---CCceEEEEEccCCCEE
Q 001336 455 WDAV-TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-AP---GHSSTMMAYSADGARL 529 (1097)
Q Consensus 455 wd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~---~~~v~~~~~s~~~~~l 529 (1097)
|++. ++...++|.+ -.++.|+... +.-+.|.......+||+.+......+. .. ...-....|+|+.+++
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred hccccccCccccccc----cceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 9986 4555566653 2456665442 333444444667899999877665522 11 1134677899999888
Q ss_pred EEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcc
Q 001336 530 FSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASP 609 (1097)
Q Consensus 530 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 609 (1097)
+--| .+||.+..+.++.|..... ...-.|+|.|..++..++ |||+++-++++.+..- .-.
T Consensus 1246 lndG---------vLWDvR~~~aIh~FD~ft~--~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~L----dqc 1305 (1516)
T KOG1832|consen 1246 LNDG---------VLWDVRIPEAIHRFDQFTD--YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSL----DQC 1305 (1516)
T ss_pred eeCc---------eeeeeccHHHHhhhhhhee--cccccccCCCceEEeech-----hhhhHHHHHHhcCccc----cce
Confidence 7533 5899999888887765542 123469999999999887 9999999888877532 225
Q ss_pred eEEEcCCCCEEEEE
Q 001336 610 CIRFNKEGILLAVS 623 (1097)
Q Consensus 610 ~v~~s~~~~~l~s~ 623 (1097)
.|.|+..|..++..
T Consensus 1306 ~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYAM 1319 (1516)
T ss_pred EEEeccCccchhhh
Confidence 78899888777643
No 227
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=6e-13 Score=141.05 Aligned_cols=289 Identities=13% Similarity=0.156 Sum_probs=209.2
Q ss_pred eEEEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEc
Q 001336 311 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 390 (1097)
Q Consensus 311 ~~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 390 (1097)
++++.|.+...-+.|..+|||+|++|+|..--.|++||+..-.+...+. -....|.-.-+|
T Consensus 43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh-------------------lDae~V~feiLs 103 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH-------------------LDAEVVDFEILS 103 (703)
T ss_pred HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec-------------------ccccceeEEEec
Confidence 4667778888999999999999999999999999999998765433211 122345556666
Q ss_pred cCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCC
Q 001336 391 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 470 (1097)
Q Consensus 391 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~ 470 (1097)
.|-..++.-..|.+|.+-.-- |..... .+. ..-..++++.-... |+.++....|+-.+++.|+.+..|....
T Consensus 104 DD~SK~v~L~~DR~IefHak~-G~hy~~--RIP---~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~ 175 (703)
T KOG2321|consen 104 DDYSKSVFLQNDRTIEFHAKY-GRHYRT--RIP---KFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDS 175 (703)
T ss_pred cchhhheEeecCceeeehhhc-Ceeeee--ecC---cCCccccccCCCcc--EEEeecCcceEEEEcccccccccccccc
Confidence 677777777788877654322 211110 111 11234444444442 5555566689999999999999998888
Q ss_pred cCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCC------C-----ceEEEEEccCCCEEEEeeeCCCCC
Q 001336 471 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG------H-----SSTMMAYSADGARLFSCGTNKEGE 539 (1097)
Q Consensus 471 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~-----~v~~~~~s~~~~~l~~~~~~~~~~ 539 (1097)
+.++++.+++.. .+|++|+.+|.|.+||.+.......+.... + .|+++.|+.+|-.+++|.. .
T Consensus 176 ~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~ 249 (703)
T KOG2321|consen 176 GELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----T 249 (703)
T ss_pred ccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----C
Confidence 999999885543 689999999999999998766544433221 1 5899999999999999876 4
Q ss_pred ceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCC
Q 001336 540 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK--NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 617 (1097)
Q Consensus 540 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 617 (1097)
+.+.+||+++.+++..-.....-+|..+.|.+.+ +.+++. +...++|||-.+|+....+.. ...++.+++-|++
T Consensus 250 G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~s 325 (703)
T KOG2321|consen 250 GSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGS 325 (703)
T ss_pred CcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc---cCCcCceeeecCC
Confidence 4699999999887665444334478888886653 444443 567899999999999988864 4468999999999
Q ss_pred CEEEEEECCCcEEEEEcCC
Q 001336 618 ILLAVSTNDNGIKILANAD 636 (1097)
Q Consensus 618 ~~l~s~~~dg~i~iw~~~~ 636 (1097)
.+++++-.++.+..|=+..
T Consensus 326 Gm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 326 GMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ceEEEecCCCcceeEEccc
Confidence 9999999888877765543
No 228
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.55 E-value=3.6e-13 Score=141.70 Aligned_cols=117 Identities=23% Similarity=0.395 Sum_probs=105.4
Q ss_pred CCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEE
Q 001336 806 EDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKT 884 (1097)
Q Consensus 806 ~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~ 884 (1097)
.+.|...+|||||++||+.+ ||.+||+|..+.+++..++.--+...|++||| ||++|++|++|-.|.||.+..++++.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 34788899999999999999 99999999999998888887788999999999 99999999999999999999999999
Q ss_pred EecccccCeEEEEEec-----------------------------------CC-------------CEEEEEeCCCcEEE
Q 001336 885 KLKGHQKRITGLAFSN-----------------------------------TL-------------NVLVSSGADSQLCV 916 (1097)
Q Consensus 885 ~l~~h~~~V~~l~~s~-----------------------------------dg-------------~~l~s~~~Dg~i~i 916 (1097)
.=++|.+.|..|+|.| ++ -.+.+.|.|..+++
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL 448 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL 448 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence 9999999999999972 01 24678899999999
Q ss_pred EEcCCCc
Q 001336 917 WSTDGWE 923 (1097)
Q Consensus 917 wd~~~~~ 923 (1097)
||+....
T Consensus 449 WDlteD~ 455 (636)
T KOG2394|consen 449 WDLTEDV 455 (636)
T ss_pred Eecchhh
Confidence 9998754
No 229
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=2.5e-12 Score=127.26 Aligned_cols=241 Identities=12% Similarity=0.150 Sum_probs=169.5
Q ss_pred CCeeEEEEccCCCEEEEEeCCeEEEEEcCCCceeEEeCCCCCC--eEEEEEeCCCCCEEEE-EECC------CcEEEEEc
Q 001336 807 DAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPA--ATFLAFHPQDNNIIAI-GMED------SSIQIYNV 877 (1097)
Q Consensus 807 ~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~--i~~l~~sp~~~~~la~-g~~d------g~v~vwd~ 877 (1097)
.....++|+.|..-++++.+...+||+.+-.+.....+.+.+. +..+-|- .++||. |+.+ ..|.|||=
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEec
Confidence 3445699999999999999988999998765443333323332 3333332 245544 4333 37999996
Q ss_pred ccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcC--CCcEE
Q 001336 878 RVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHL--DQTHL 955 (1097)
Q Consensus 878 ~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--dg~~l 955 (1097)
...+++.++. ...+|.++.++++ .|+..- .+.|+||.+...- +....+...... .+ -++..| ...+|
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~-k~l~~~et~~NP----kG--lC~~~~~~~k~~L 151 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNP-KLLHVIETRSNP----KG--LCSLCPTSNKSLL 151 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCCh-hheeeeecccCC----Cc--eEeecCCCCceEE
Confidence 6677777776 6688999999865 455543 5779999998522 111222222111 12 234444 34455
Q ss_pred EE-E-eCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCe-EEEEeCCCCceeeeeCCCCcCCCCCC
Q 001336 956 LA-V-HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGS-VGVLTASTLRLRCRINPTAYLPTNPS 1032 (1097)
Q Consensus 956 ~~-~-~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~-v~vwd~~~~~~~~~~~~~~~~~~~h~ 1032 (1097)
|. + .-|+|+|-|+...+.-.......|.+.|.|++++-+|.++||+|..|+ |||||..+|+.++.+..+. ..
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-----d~ 226 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-----DR 226 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-----ch
Confidence 55 5 559999999987666333333489999999999999999999999997 8999999999998887553 33
Q ss_pred CceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCCCc
Q 001336 1033 LRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEG 1069 (1097)
Q Consensus 1033 ~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~~~ 1069 (1097)
+.|++| +|+| +..+|++.|+.|+|+++.+.....
T Consensus 227 A~iy~i--aFSp-~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 227 ADIYCI--AFSP-NSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred heEEEE--EeCC-CccEEEEEcCCCeEEEEEeecCCC
Confidence 557765 9999 789999999999999999987653
No 230
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.53 E-value=4.2e-14 Score=145.99 Aligned_cols=288 Identities=16% Similarity=0.155 Sum_probs=220.3
Q ss_pred CCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEE
Q 001336 319 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 398 (1097)
Q Consensus 319 ~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 398 (1097)
....+.+.|+-+|++| +.|+.-|.|..+|+.++++..... -...|..+.|-.+..++|+
T Consensus 129 eFGPY~~~ytrnGrhl-llgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AV 187 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHL-LLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAV 187 (545)
T ss_pred ccCCeeeeecCCccEE-EecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHh
Confidence 4456789999999987 577788999999999998765321 2347888999999999998
Q ss_pred EECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEee
Q 001336 399 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICP 478 (1097)
Q Consensus 399 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 478 (1097)
+- ...++|||-.. .++.+ +..| ..|..+.|.|-.- +|++++..|.++.-|+.+|+.+..+..-.+.+..++-
T Consensus 188 AQ-K~y~yvYD~~G-tElHC---lk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~q 259 (545)
T KOG1272|consen 188 AQ-KKYVYVYDNNG-TELHC---LKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQ 259 (545)
T ss_pred hh-hceEEEecCCC-cEEee---hhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhc
Confidence 84 55689999664 44554 4334 4589999999876 8999999999999999999999999888888888876
Q ss_pred cccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecC
Q 001336 479 HHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG 558 (1097)
Q Consensus 479 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 558 (1097)
+|. ...+-+|...|+|.+|.....+....+..|.++|.++++.++|+|+++.|.|. .+.|||++....+.++..
T Consensus 260 NP~--NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr----~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 260 NPY--NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDR----KVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred CCc--cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccccc----ceeEeeeccccccceeec
Confidence 443 36888899999999999999999999999999999999999999999998754 699999999887777665
Q ss_pred CCCcceEEEEEcCCCCEEEEEeCCCcEEEEE-CCCC--ceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001336 559 LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD-MDNV--NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 559 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~ 635 (1097)
.. ....+++|..| +++.+....|.||. .-.+ ..-..+-.|.-...|..+.|.|-...|-.|...|.-.|.-..
T Consensus 334 p~--~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPG 409 (545)
T KOG1272|consen 334 PH--PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPG 409 (545)
T ss_pred CC--Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccC
Confidence 22 56677887655 55555566899994 3221 111222223334578999999988888888877766665555
Q ss_pred CCceEEEEec
Q 001336 636 DGIRLLRTVE 645 (1097)
Q Consensus 636 ~~~~~~~~~~ 645 (1097)
.|..-...+.
T Consensus 410 sGePN~Ds~e 419 (545)
T KOG1272|consen 410 SGEPNYDSLE 419 (545)
T ss_pred CCCCCcchhc
Confidence 5544343333
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=4.2e-12 Score=145.86 Aligned_cols=222 Identities=13% Similarity=0.033 Sum_probs=152.4
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEC---CCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCc--
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYS---KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV-- 451 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~---dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~-- 451 (1097)
+..|...+.+.+|||||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|+|||+. ++++.+.++.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 271 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE----LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTD 271 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----EeecCCCcccCcEECCCCCE-EEEEEecCCCce
Confidence 4567889999999999999998764 468999999988643 25556777889999999995 3456666654
Q ss_pred EEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEc-CCC--eEEEEEcCCCCceeeecCCCCceEEEEEccCCCE
Q 001336 452 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDG--KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGAR 528 (1097)
Q Consensus 452 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 528 (1097)
|.+||+.+++. ..+..+........| ++||+.|+..+ .+| .|.+||++..... .+......+....|+|+|+.
T Consensus 272 Iy~~d~~~~~~-~~Lt~~~~~~~~~~~--spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 272 IYTMDLRSGTT-TRLTDSPAIDTSPSY--SPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDL 347 (435)
T ss_pred EEEEECCCCce-EEccCCCCccCceeE--cCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCE
Confidence 77889887765 445556655666777 55667777665 333 5777787654433 33333445667889999999
Q ss_pred EEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceEEEEecC
Q 001336 529 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE------FMIKFWDMDNVNLLASIDAD 602 (1097)
Q Consensus 529 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~ 602 (1097)
|+....+. +...|.+||+..+.. +.+... ..+....|+|+|+.|+..+.+ ..++++|+..+.. ..+..
T Consensus 348 ia~~~~~~-~~~~i~~~d~~~~~~-~~lt~~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~- 421 (435)
T PRK05137 348 IAFTKQGG-GQFSIGVMKPDGSGE-RILTSG--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT- 421 (435)
T ss_pred EEEEEcCC-CceEEEEEECCCCce-EeccCC--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccC-
Confidence 99876432 346799999865543 333321 145678999999988776532 3588888876654 34432
Q ss_pred CCCCCcceEEEcC
Q 001336 603 GGLQASPCIRFNK 615 (1097)
Q Consensus 603 ~~~~~v~~v~~s~ 615 (1097)
...+...+|+|
T Consensus 422 --~~~~~~p~Wsp 432 (435)
T PRK05137 422 --PGDASDPAWSP 432 (435)
T ss_pred --CCCccCcccCC
Confidence 22356777876
No 232
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.53 E-value=3.9e-09 Score=129.09 Aligned_cols=577 Identities=12% Similarity=0.130 Sum_probs=307.1
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEE----EcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCC
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLW----EVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 393 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~ 393 (1097)
....|.++.|-++...+ +.+..+|.|.+. +..+..... ...-...|.|++||||+
T Consensus 74 ~~~~ivs~~yl~d~~~l-~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESL-CIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCCcE-EEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCc
Confidence 35689999999998854 677889999999 555444322 23345799999999999
Q ss_pred CEEEEEECCCEEEEEEccCCeeeeeeeeeecc---cCcEEEEEEecCCCcEEEEEEeCCCcE-E-EEECCCC-ceeEEee
Q 001336 394 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAH---VGSVNDLAFSYPNKQLSVVTCGEDRVI-K-VWDAVTG-TKQYIFE 467 (1097)
Q Consensus 394 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h---~~~V~~l~~s~d~~~~~l~s~s~d~~i-~-iwd~~~~-~~~~~~~ 467 (1097)
..||..+.++++.+-+- +-+.+... .+... ...-..+-|-....+ .=|+..+.. + +=|..-. .....+.
T Consensus 133 Ella~vT~~~~l~~mt~-~fd~i~E~-~l~~~~~~~~~~VsVGWGkKeTQ---F~Gs~gK~aa~~~~~p~~~~~d~~~~s 207 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTR-DFDPISEV-PLDSDDFGESKHVSVGWGKKETQ---FHGSAGKAAARQLRDPTVPKVDEGKLS 207 (928)
T ss_pred CEEEEEeCCCEEEEEec-cceEEEEe-ecCccccCCCceeeeccCcccCc---cCcchhhhhhhhccCCCCCccccCccc
Confidence 99999999998887642 22222211 11110 011222333222221 111110000 0 0000000 0001122
Q ss_pred cCCcCeEEEeecccCCccEEEEEcC---C---CeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCce
Q 001336 468 GHESPVYSICPHHKENIQFIFSTAT---D---GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 541 (1097)
Q Consensus 468 ~h~~~v~~~~~~~~~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 541 (1097)
+.+.-..++| .+||.++++.+. . ..+|+|+-+ +.....-+.-.+--.+++|-|.|+++++... ......
T Consensus 208 -~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~ 282 (928)
T PF04762_consen 208 -WDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHD 282 (928)
T ss_pred -cCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcE
Confidence 3334445666 889999988764 2 579999755 3333323323333457899999999999875 333456
Q ss_pred EEEEeCCCCeeeEEecC---CCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE--EEEecCCCCCCcceEEEcCC
Q 001336 542 LVEWNESEGAVKRTYHG---LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL--ASIDADGGLQASPCIRFNKE 616 (1097)
Q Consensus 542 i~~wd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~ 616 (1097)
|.+|. ++|-....|.- .....+..+.|++++..|+..-.|. |.+|...+..-. +.+.... ...+..+.|+|.
T Consensus 283 VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~-~~~~~~~~Wdpe 359 (928)
T PF04762_consen 283 VVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS-SESVNFVKWDPE 359 (928)
T ss_pred EEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC-CCCCCceEECCC
Confidence 76776 34443333332 2344789999999999999987665 999998876532 3333221 234556999994
Q ss_pred -CCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCC
Q 001336 617 -GILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND 695 (1097)
Q Consensus 617 -~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1097)
...|...+.+|.+..++..-. ...+......
T Consensus 360 ~p~~L~v~t~~g~~~~~~~~~~-----v~~s~~~~~~------------------------------------------- 391 (928)
T PF04762_consen 360 KPLRLHVLTSNGQYEIYDFAWD-----VSRSPGSSPN------------------------------------------- 391 (928)
T ss_pred CCCEEEEEecCCcEEEEEEEEE-----EEecCCCCcc-------------------------------------------
Confidence 456777777777776654211 1101000000
Q ss_pred CCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCc
Q 001336 696 SRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNS 775 (1097)
Q Consensus 696 ~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~ 775 (1097)
....+..-...++.+-.+....-+...-...+. -...|.+++|++++..+++...||.+.+|.+.......
T Consensus 392 ------D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~---~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~ 462 (928)
T PF04762_consen 392 ------DNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE---LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWS 462 (928)
T ss_pred ------CceEEEEEeCCeEEEecccccCCCchHhceEEc---CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCccc
Confidence 000000000123333333322222222111111 24679999999999989999999999999866432211
Q ss_pred cCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-C---CeEEEEEcCCCc---eeEEeCCCCC
Q 001336 776 TGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFK---TMTTFMPPPP 848 (1097)
Q Consensus 776 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-d---g~i~iwd~~~~~---~~~~~~~~~~ 848 (1097)
....... .............. .....+..++|..+..+++... + ..+.++++...+ .......-.+
T Consensus 463 ~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 535 (928)
T PF04762_consen 463 VKPPKLL-----SSISLDSMDISDSE--LPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDG 535 (928)
T ss_pred ccCcchh-----hhcccccccccccc--cccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCc
Confidence 0000000 00000000000000 1345678899988888777766 3 458888874332 2333333345
Q ss_pred CeEEEEEeCCCCCEEEEEECCCcEEEEEcccceE-EEEecccccCeEEEEEecCCC---EEEEEeCCCcEEEEEcCCCcc
Q 001336 849 AATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV-KTKLKGHQKRITGLAFSNTLN---VLVSSGADSQLCVWSTDGWEK 924 (1097)
Q Consensus 849 ~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~-~~~l~~h~~~V~~l~~s~dg~---~l~s~~~Dg~i~iwd~~~~~~ 924 (1097)
.+..+...+ +...++.-..+|.+...+...... +..+..-... ..+....+.. .++.-+..|.+++ .. .
T Consensus 536 ~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~-~~~~~~~~~~~~~~~~GLs~~~~Ly~---n~-~- 608 (928)
T PF04762_consen 536 VVLIISSSP-DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPW-MEVCQINGSEDKRVLFGLSSNGRLYA---NS-R- 608 (928)
T ss_pred eEEEEeeCC-CCcEEEEEECCCEEEEeecCCCccccccCCCCCcE-EEEEEECCccceeEEEEECCCCEEEE---CC-E-
Confidence 555555555 444577777899888666554321 1222222122 2222222222 4444444444432 11 0
Q ss_pred cceeeEeecCCCCCCccCCeEEEEcCCCcEE-EEEeCCeEEEEeCCC-cceeeeeeccC----CCCCEEEEEEecCCCEE
Q 001336 925 QASKFLTIPNGRTASALADTRVQFHLDQTHL-LAVHETQIAIYEAPK-LECLKQFVPRE----ASGPITHATYSCDSQSI 998 (1097)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l-~~~~d~~v~vwd~~~-~~~~~~~~~~~----h~~~v~~v~~s~dg~~l 998 (1097)
.+. ..++++.+. +.+| ++.....+++.++.. .+.+.... .. +...+ .--..|..|
T Consensus 609 ----~la---------~~~tSF~v~--~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~-~~~~~~~de~~---R~VERGsri 669 (928)
T PF04762_consen 609 ----LLA---------SNCTSFAVT--DSFLLFTTTQHTLKFVHLNSSVEDLEIPP-DSPENSYDERC---RRVERGSRI 669 (928)
T ss_pred ----EEe---------cCCceEEEE--cCEEEEEecCceEEEEECcCchhhccccc-Ccccccccccc---ccCccCCEE
Confidence 111 235666664 3444 446778899999882 11111111 01 11222 334578888
Q ss_pred EEEecCCeEEEEeCCCCcee
Q 001336 999 YVAFEEGSVGVLTASTLRLR 1018 (1097)
Q Consensus 999 ~s~s~Dg~v~vwd~~~~~~~ 1018 (1097)
+++--..+=-|..+..|.+.
T Consensus 670 Vt~vp~~~~vVLQmPRGNLE 689 (928)
T PF04762_consen 670 VTAVPSDTSVVLQMPRGNLE 689 (928)
T ss_pred EEEeCCCceEEEEcCCCchh
Confidence 88876666667888888764
No 233
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=4.6e-13 Score=140.92 Aligned_cols=214 Identities=14% Similarity=0.159 Sum_probs=153.1
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCCceeEEeC----CCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccc
Q 001336 816 KNDSYVMSAS-GGKISLFNMMTFKTMTTFM----PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQ 890 (1097)
Q Consensus 816 ~dg~~la~~s-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~ 890 (1097)
+.+--+.++- -|.|.+.|....+..+.+. -....++|+.|-|.+...+.++-.+|.+++||.. +.
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~----------~~ 252 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE----------IV 252 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc----------cc
Confidence 4555666665 6888888875532222121 1236799999999666777788899999999862 11
Q ss_pred cCeEEEEEe--cCCCEEEEEeC-----CCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-EeCCe
Q 001336 891 KRITGLAFS--NTLNVLVSSGA-----DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQ 962 (1097)
Q Consensus 891 ~~V~~l~~s--~dg~~l~s~~~-----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~~d~~ 962 (1097)
...+...|. +++..++..-. +.-+.-|-+.. +.|...+|||||++||+ +.||.
T Consensus 253 ~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~-------------------g~in~f~FS~DG~~LA~VSqDGf 313 (636)
T KOG2394|consen 253 CGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGE-------------------GSINEFAFSPDGKYLATVSQDGF 313 (636)
T ss_pred ccCCCCcccccCCCCeeEEeeeeccccCCccceeEecc-------------------ccccceeEcCCCceEEEEecCce
Confidence 222222222 34444432211 11222232222 35888999999999999 79999
Q ss_pred EEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEE
Q 001336 963 IAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAG 1042 (1097)
Q Consensus 963 v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~ 1042 (1097)
++|+|..+.+++..+. ..-+...|++|||||+||++|++|.-|.||.+...+.+++-. ||.+.|..+ +|
T Consensus 314 LRvF~fdt~eLlg~mk--SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq-------GHkSWVs~V--aF 382 (636)
T KOG2394|consen 314 LRIFDFDTQELLGVMK--SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ-------GHKSWVSVV--AF 382 (636)
T ss_pred EEEeeccHHHHHHHHH--hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc-------ccccceeeE--ee
Confidence 9999999988877665 456889999999999999999999999999999999998876 788888877 44
Q ss_pred cC-------------------------------C----------------CCCEEEEEecCCcEEEEecCCCCc
Q 001336 1043 NP-------------------------------T----------------DPNQFALGLTDGGVYIIEPLEAEG 1069 (1097)
Q Consensus 1043 ~p-------------------------------~----------------~~~~l~s~~~Dg~v~~W~~~~~~~ 1069 (1097)
.| + ....|.+.+.|-.+.+||+.+..-
T Consensus 383 Dpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 383 DPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred cccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence 31 0 113788999999999999998874
No 234
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=8.8e-12 Score=135.07 Aligned_cols=519 Identities=11% Similarity=0.103 Sum_probs=305.2
Q ss_pred CCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCee------------eeeeeeeecccCcEEEEEEecCCCcEEEEEE
Q 001336 379 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE------------LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTC 446 (1097)
Q Consensus 379 ~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~------------~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~ 446 (1097)
.......|++|+....|+|+|+.||.++|-.+.+... +.-..++.||.+.|.-+.|+.+.+ .|-|.
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtS 89 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTS 89 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--ccccc
Confidence 3456789999999999999999999999998865321 111235889999999999998887 68999
Q ss_pred eCCCcEEEEECCCCceeEEe--ecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEcc
Q 001336 447 GEDRVIKVWDAVTGTKQYIF--EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA 524 (1097)
Q Consensus 447 s~d~~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 524 (1097)
..+|.|.+|-+-.|.....+ ......|.+++| +.+|..+.....||.|.+=.++ +....-....+.....+.|++
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW--n~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg~~l~hv~ws~ 166 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW--NLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKGQLLAHVLWSE 166 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEE--cCCCcEEEEEEccCCEEEEeec-cceecchhcchheccceeecc
Confidence 99999999999888765433 234566788888 6677888888889888776554 333333334444566789999
Q ss_pred CCCEEEEeeeCCCCCceEEEEeCCCCe-------eeEEecCC---CCcceEEEEE--------cCCCCEEEEEeCCCcEE
Q 001336 525 DGARLFSCGTNKEGESYLVEWNESEGA-------VKRTYHGL---GKRSVGVVQF--------DTTKNRFLAAGDEFMIK 586 (1097)
Q Consensus 525 ~~~~l~~~~~~~~~~~~i~~wd~~~~~-------~~~~~~~~---~~~~v~~~~~--------~~~~~~l~~~~~dg~i~ 586 (1097)
|.+.++.+-.+ +.+++||.+..- +.-...+. ....+..+.| -|+...|+.+-.+|.+.
T Consensus 167 D~~~~Lf~~an----ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q 242 (1189)
T KOG2041|consen 167 DLEQALFKKAN----GETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ 242 (1189)
T ss_pred cHHHHHhhhcC----CcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence 99988776543 358888876421 10011110 0112334444 35778999999999998
Q ss_pred EEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCccc
Q 001336 587 FWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIG 666 (1097)
Q Consensus 587 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1097)
|-.-.+...-..+.. ...+..+.|+++|..||+++.+..-.- +..+..-.+...-|+
T Consensus 243 iMR~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~da~~-~~d~n~v~Fysp~G~------------------- 299 (1189)
T KOG2041|consen 243 IMRSENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDSDADE-PTDSNKVHFYSPYGH------------------- 299 (1189)
T ss_pred hhhhcCCCCCeEEec---ccEeecceecCCCcEEEEccCcccccC-ccccceEEEeccchh-------------------
Confidence 876554433333332 235778999999999999987632100 000000000000000
Q ss_pred ccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEE
Q 001336 667 TFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLI 746 (1097)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 746 (1097)
....+.. ....|++++
T Consensus 300 ------------------------------------------------------------i~gtlkv----pg~~It~ls 315 (1189)
T KOG2041|consen 300 ------------------------------------------------------------IVGTLKV----PGSCITGLS 315 (1189)
T ss_pred ------------------------------------------------------------heEEEec----CCceeeeeE
Confidence 0001111 224455555
Q ss_pred EccCCceeeeeccCcEEEEeccCCC----------CCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEcc
Q 001336 747 YTNSGLAILALASNAVHKLWKWPRN----------ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK 816 (1097)
Q Consensus 747 ~spdg~~l~~~~~dg~i~vw~~~~~----------~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 816 (1097)
|-..|-.++.+- |+.|.+=++... .+.-.+.......+..||..+.+..... -....+++++.
T Consensus 316 WEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~------V~~~~~~a~~~ 388 (1189)
T KOG2041|consen 316 WEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKT------VTHFENMAFYR 388 (1189)
T ss_pred EcCCceEEEEEe-cceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhh------hcceeehheec
Confidence 555554444332 223332222111 0000111111223456777666543322 23345677777
Q ss_pred CCCEEEEEe-CCeEEEEEc-CCCceeEEeC-----C--CCC---CeEEEEEeCCCCCEEEEEECCCcEEEEEcccceE--
Q 001336 817 NDSYVMSAS-GGKISLFNM-MTFKTMTTFM-----P--PPP---AATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV-- 882 (1097)
Q Consensus 817 dg~~la~~s-dg~i~iwd~-~~~~~~~~~~-----~--~~~---~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~-- 882 (1097)
+--.|+.-. ++.+.=++. ++...+..+. + -+. .|.-.-..- ++..++.++.+ .+.+|.....+.
T Consensus 389 ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e-~~~iWhy~~pK~~s 466 (1189)
T KOG2041|consen 389 EHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEE-RYFIWHYVLPKFNS 466 (1189)
T ss_pred ccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEeccc-cEEEEEEeccchhh
Confidence 666666555 565554422 1211111111 0 011 122111111 56677777765 488887532111
Q ss_pred ------------------------------EEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEee
Q 001336 883 ------------------------------KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTI 932 (1097)
Q Consensus 883 ------------------------------~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~ 932 (1097)
..++.|-.++|.+++.| .++|..+-..|.|.-+.+...-... .
T Consensus 467 ~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n-----~ 539 (1189)
T KOG2041|consen 467 VLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTN-----S 539 (1189)
T ss_pred hhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeee-----c
Confidence 12344566788888876 5688888889999999988733111 1
Q ss_pred cCCCCCCccCCeEEEEcCCCcEEEE-EeCCeEEEEeCC---CcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEE
Q 001336 933 PNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAP---KLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVG 1008 (1097)
Q Consensus 933 ~~~~~~~~~~v~~l~~s~dg~~l~~-~~d~~v~vwd~~---~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~ 1008 (1097)
. +....+..+.+.-....+++ -.-|.+.+.|+. +|..+..+.. .....|+.+.|..|...|+.-.+.-.+.
T Consensus 540 y----~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~-~errDVWd~~Wa~dNp~llAlmeKtrmy 614 (1189)
T KOG2041|consen 540 Y----PVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYT-SERRDVWDYEWAQDNPNLLALMEKTRMY 614 (1189)
T ss_pred c----ccCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeeh-hhhhhhhhhhhccCCchHHhhhhhceEE
Confidence 1 11135777888777777777 456788888776 3444443321 2367899999999888877666666777
Q ss_pred EEeCCC
Q 001336 1009 VLTAST 1014 (1097)
Q Consensus 1009 vwd~~~ 1014 (1097)
|++-.+
T Consensus 615 ifrgnd 620 (1189)
T KOG2041|consen 615 IFRGND 620 (1189)
T ss_pred EecCcC
Confidence 887544
No 235
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.2e-10 Score=126.55 Aligned_cols=511 Identities=14% Similarity=0.141 Sum_probs=294.0
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
......|++|+....|+ |+|+.||.++|-.+.+...-.... .+...+.-.....+.||++.|.-+.|+.+.+.|-
T Consensus 13 nnvkL~c~~WNke~gyI-AcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYI-ACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCCeE-EeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEecccccccc
Confidence 34567799999998865 999999999999987653221100 0111111122235899999999999999999999
Q ss_pred EEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC---------cee-----
Q 001336 398 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG---------TKQ----- 463 (1097)
Q Consensus 398 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~---------~~~----- 463 (1097)
+...+|-|.||-+-.|.-...+ .-......|.+++|..||. .++..-.||.|.+=.++.. ..+
T Consensus 88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~w 164 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLW 164 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchheccceee
Confidence 9999999999998777533221 1223456789999999988 5666666665544222111 000
Q ss_pred ------------------EE--------------------eecCCcCeEEEeecc------cCCccEEEEEcCCCeEEEE
Q 001336 464 ------------------YI--------------------FEGHESPVYSICPHH------KENIQFIFSTATDGKIKAW 499 (1097)
Q Consensus 464 ------------------~~--------------------~~~h~~~v~~~~~~~------~~~~~~l~s~~~dg~i~iw 499 (1097)
.. +......|-.++|.. .|+...++.+-.+|.+.+-
T Consensus 165 s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiM 244 (1189)
T KOG2041|consen 165 SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIM 244 (1189)
T ss_pred cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhh
Confidence 00 000111133333321 2355788999999999888
Q ss_pred EcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCC-----CceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCC
Q 001336 500 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG-----ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN 574 (1097)
Q Consensus 500 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-----~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 574 (1097)
.-.+......+.. +-.+....|+++|..|+++|.+.+. .+.|..|. .-|+.+.+++.... .|+.++|-..|-
T Consensus 245 R~eND~~Pvv~dt-gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~-~It~lsWEg~gL 321 (1189)
T KOG2041|consen 245 RSENDPEPVVVDT-GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS-CITGLSWEGTGL 321 (1189)
T ss_pred hhcCCCCCeEEec-ccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc-eeeeeEEcCCce
Confidence 7666555555443 3578899999999999999975432 22455554 34777777777665 889999977775
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccc
Q 001336 575 RFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRV 654 (1097)
Q Consensus 575 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 654 (1097)
.++.+ .|+.|++=+++..-....+.. .+.+--.+.- .....|.+||..+.+..++...+-
T Consensus 322 riA~A-vdsfiyfanIRP~ykWgy~e~--------TvVy~y~~~e----~p~y~i~Fwdtk~nek~vK~V~~~------- 381 (1189)
T KOG2041|consen 322 RIAIA-VDSFIYFANIRPEYKWGYIEE--------TVVYVYQKEE----LPQYGIMFWDTKTNEKTVKTVTHF------- 381 (1189)
T ss_pred EEEEE-ecceEEEEeecccceEEEeee--------EEEEEEccCC----CcceEEEEEecccChhhhhhhcce-------
Confidence 55554 467888877654322222210 1111100100 012357789988775444433221
Q ss_pred cccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccC
Q 001336 655 ASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLP 734 (1097)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 734 (1097)
T Consensus 382 -------------------------------------------------------------------------------- 381 (1189)
T KOG2041|consen 382 -------------------------------------------------------------------------------- 381 (1189)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEE
Q 001336 735 DNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFAL 814 (1097)
Q Consensus 735 ~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~ 814 (1097)
.+++|..+--.|+.-..+|.+.-++.-.. ++ +...+.+-+ .-|..+. - .-..|.-.-.
T Consensus 382 --------~~~a~~~ehCvL~~~~d~~~i~e~s~le~-~~------~~~~l~LCN-SIGT~lD----~--kytdirP~Fv 439 (1189)
T KOG2041|consen 382 --------ENMAFYREHCVLINRQDDGVIPEYSTLEN-RS------RVYFLQLCN-SIGTSLD----Y--KYTDIRPKFV 439 (1189)
T ss_pred --------eehheecccEEEEeccccCCCcchhhhhc-cc------ceEEEeeec-ccCCcCC----C--CcceeeeeEE
Confidence 11111111111222222222211100000 00 000000000 0000000 0 1112222222
Q ss_pred ccCCCEEEEEeCCeEEEEEcCCCc--------------------------------eeEEeCCCCCCeEEEEEeCCCCCE
Q 001336 815 SKNDSYVMSASGGKISLFNMMTFK--------------------------------TMTTFMPPPPAATFLAFHPQDNNI 862 (1097)
Q Consensus 815 s~dg~~la~~sdg~i~iwd~~~~~--------------------------------~~~~~~~~~~~i~~l~~sp~~~~~ 862 (1097)
.-++..++.++...+.+|.....+ -..++.+...+|.+++.+. ++
T Consensus 440 ~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~sd---k~ 516 (1189)
T KOG2041|consen 440 CVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCISD---KF 516 (1189)
T ss_pred EecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeecc---eE
Confidence 346677777787777788642110 0133455667788888864 79
Q ss_pred EEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCC-CcccceeeEeecCCCCCCcc
Q 001336 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG-WEKQASKFLTIPNGRTASAL 941 (1097)
Q Consensus 863 la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~ 941 (1097)
|.++-..|.|+-|.+.+.-...... -+..|..++.+-+...+|.-..-|.+.+.|+.- ........+...+. .
T Consensus 517 l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~er-----r 590 (1189)
T KOG2041|consen 517 LMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSER-----R 590 (1189)
T ss_pred EEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhh-----h
Confidence 9999999999999999877665544 345688899988888899888889899888873 11111111211111 3
Q ss_pred CCeEEEEcCCCcEEEE-EeCCeEEEEeCCC
Q 001336 942 ADTRVQFHLDQTHLLA-VHETQIAIYEAPK 970 (1097)
Q Consensus 942 ~v~~l~~s~dg~~l~~-~~d~~v~vwd~~~ 970 (1097)
.|..+.|..|...|++ -....++|++-..
T Consensus 591 DVWd~~Wa~dNp~llAlmeKtrmyifrgnd 620 (1189)
T KOG2041|consen 591 DVWDYEWAQDNPNLLALMEKTRMYIFRGND 620 (1189)
T ss_pred hhhhhhhccCCchHHhhhhhceEEEecCcC
Confidence 4788888888776665 3445677776543
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=2.3e-12 Score=147.72 Aligned_cols=238 Identities=13% Similarity=0.082 Sum_probs=158.7
Q ss_pred CeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECC---CEEEEEEccCCeeeee
Q 001336 342 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRN 418 (1097)
Q Consensus 342 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~d---g~i~iwd~~~~~~~~~ 418 (1097)
..|.+||........ +..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 468888886543322 44567789999999999999988743 479999998876432
Q ss_pred eeeeecccCcEEEEEEecCCCcEEEEEEeCCC--cEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEc-CCCe
Q 001336 419 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDGK 495 (1097)
Q Consensus 419 ~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~ 495 (1097)
+..+.+...+.+|+|||+. ++++.+.++ .|++||+.+++. ..+..+.......+| ++||+.|+..+ .+|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~--spDG~~l~f~sd~~g~ 315 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTW--APDGKSIYFTSDRGGR 315 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEE--CCCCCEEEEEECCCCC
Confidence 3334455568899999995 344555555 699999988875 445555555566777 55667776655 4555
Q ss_pred --EEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCC
Q 001336 496 --IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK 573 (1097)
Q Consensus 496 --i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 573 (1097)
|.++++.+++.. .+...+......+|+|||++++....+ ++...|.+||+.+++......+. ......|+|+|
T Consensus 316 ~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~~Lt~~~---~~~~p~~spdG 390 (433)
T PRK04922 316 PQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVRTLTPGS---LDESPSFAPNG 390 (433)
T ss_pred ceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeEECCCCC---CCCCceECCCC
Confidence 555565554432 222333445578999999999887643 33557999999887655332221 23456899999
Q ss_pred CEEEEEeC---CCcEEEEECCCCceEEEEecCCCCCCcceEEEcC
Q 001336 574 NRFLAAGD---EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 615 (1097)
Q Consensus 574 ~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 615 (1097)
+.++..+. .+.|++++++. .....+..+ ...+...+|+|
T Consensus 391 ~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~--~g~~~~p~wsp 432 (433)
T PRK04922 391 SMVLYATREGGRGVLAAVSTDG-RVRQRLVSA--DGEVREPAWSP 432 (433)
T ss_pred CEEEEEEecCCceEEEEEECCC-CceEEcccC--CCCCCCCccCC
Confidence 98887764 34688888854 445555433 34566777876
No 237
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=5.3e-12 Score=143.87 Aligned_cols=236 Identities=10% Similarity=0.068 Sum_probs=154.4
Q ss_pred cceeecCCCCceEEEEeecCCCeeEEEEccCCCeEEEEEe--CCCeEEEEEcCCCceeeeeeeeEeeccccCcccccccc
Q 001336 300 QSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGT--NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLS 377 (1097)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (1097)
|.+++.|+..... ...+...+.+.+|||||+.|+.+.. .+..|.+|++.+++... +
T Consensus 181 l~~~d~dg~~~~~--lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l 238 (429)
T PRK03629 181 LRVSDYDGYNQFV--VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------V 238 (429)
T ss_pred EEEEcCCCCCCEE--eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------c
Confidence 5555555533222 2346678999999999998765543 24579999998876432 1
Q ss_pred CCCCCCeEEEEEccCCCEEEEE-ECCC--EEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeC-CC--c
Q 001336 378 SDYTASVNRVMWSPDGTLFGVA-YSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DR--V 451 (1097)
Q Consensus 378 ~~h~~~V~~v~~spd~~~las~-~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~-d~--~ 451 (1097)
....+.+..++|||||+.|+.. +.+| .|.+||+.+++... +..+...+....|+|||+ .|+..+. ++ .
T Consensus 239 ~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~ 312 (429)
T PRK03629 239 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQ 312 (429)
T ss_pred cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCC--EEEEEeCCCCCce
Confidence 1222334568999999999875 4444 58999998876432 444555678899999999 5655554 34 4
Q ss_pred EEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCC---CeEEEEEcCCCCceeeecCCCCceEEEEEccCCCE
Q 001336 452 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATD---GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGAR 528 (1097)
Q Consensus 452 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 528 (1097)
|.++|+.+++. ..+..+.......+| ++||++|+..+.+ ..|.+||++++.... +.. ........|+|||+.
T Consensus 313 Iy~~d~~~g~~-~~lt~~~~~~~~~~~--SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~ 387 (429)
T PRK03629 313 VYKVNINGGAP-QRITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTM 387 (429)
T ss_pred EEEEECCCCCe-EEeecCCCCccCEEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCE
Confidence 55557766654 334334444555666 5666777765443 357888987765432 222 223456789999999
Q ss_pred EEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcC
Q 001336 529 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT 571 (1097)
Q Consensus 529 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 571 (1097)
|+..+.++. ...+.++++. +...+.+.++.. .+...+|+|
T Consensus 388 i~~~s~~~~-~~~l~~~~~~-G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 388 VIYSSSQGM-GSVLNLVSTD-GRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEEEEcCCC-ceEEEEEECC-CCCeEECccCCC-CcCCcccCC
Confidence 999887543 4568888884 555566666554 677777876
No 238
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=5e-12 Score=144.31 Aligned_cols=225 Identities=14% Similarity=0.072 Sum_probs=149.0
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECC---CEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 453 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 453 (1097)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 34567789999999999999987743 469999999886432 3334455678999999994 344667787766
Q ss_pred EEE--CCCCceeEEeecCCcCeEEEeecccCCccEEEEEc-CCCeEEEEEcCCCC-ceeeecCCCCceEEEEEccCCCEE
Q 001336 454 VWD--AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDGKIKAWLYDNLG-SRVDYDAPGHSSTMMAYSADGARL 529 (1097)
Q Consensus 454 iwd--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l 529 (1097)
||. +.++. ...+..+........| ++||+.|+..+ .+|...+|.++... ....+...+.......|+|||+++
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~w--SpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~I 342 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFF--SPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLL 342 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEE--cCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEE
Confidence 664 44444 5556556555566777 55667776554 45677777664322 222222233344567899999999
Q ss_pred EEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceEEEEecCCCCC
Q 001336 530 FSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF---MIKFWDMDNVNLLASIDADGGLQ 606 (1097)
Q Consensus 530 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~ 606 (1097)
+..+.++ +...|.+||+.+++........ ......|+|+|+.|+.++.++ .+++.+. +++....+..+ ..
T Consensus 343 a~~s~~~-g~~~I~v~d~~~g~~~~lt~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~--~g 415 (427)
T PRK02889 343 AYISRVG-GAFKLYVQDLATGQVTALTDTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQ--GG 415 (427)
T ss_pred EEEEccC-CcEEEEEEECCCCCeEEccCCC---CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecC--CC
Confidence 9876543 3457999999888654433321 335679999999988887443 3566666 45656666543 34
Q ss_pred CcceEEEcCC
Q 001336 607 ASPCIRFNKE 616 (1097)
Q Consensus 607 ~v~~v~~s~~ 616 (1097)
.+...+|+|-
T Consensus 416 ~~~~p~wsp~ 425 (427)
T PRK02889 416 DVREPSWGPF 425 (427)
T ss_pred CCCCCccCCC
Confidence 5677888873
No 239
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.49 E-value=2.8e-10 Score=126.12 Aligned_cols=208 Identities=16% Similarity=0.210 Sum_probs=132.7
Q ss_pred CeeEEEEccCCCEEEEEe--CCeEEEEEcCC-CceeEE---e----------CCCCCCeEEEEEeCCCCCEEEEEE-CCC
Q 001336 808 AVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMTT---F----------MPPPPAATFLAFHPQDNNIIAIGM-EDS 870 (1097)
Q Consensus 808 ~v~~l~~s~dg~~la~~s--dg~i~iwd~~~-~~~~~~---~----------~~~~~~i~~l~~sp~~~~~la~g~-~dg 870 (1097)
....++++|++++|+++. +|.|.++++.. +..... + +.......++.|+| +++++++.. ...
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence 345677777777777776 57777777765 332222 1 11234578999999 888777765 344
Q ss_pred cEEEEEcccce--EE--EEec-ccccCeEEEEEecCCCEEEEEeC-CCcEEEEEcC--CCcccceeeEeecCCCCCCccC
Q 001336 871 SIQIYNVRVDE--VK--TKLK-GHQKRITGLAFSNTLNVLVSSGA-DSQLCVWSTD--GWEKQASKFLTIPNGRTASALA 942 (1097)
Q Consensus 871 ~v~vwd~~~~~--~~--~~l~-~h~~~V~~l~~s~dg~~l~s~~~-Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~ 942 (1097)
.|++|++.... +. ..+. .....-+.++|+||+++++...+ ++.|.++++. .++......+............
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 79999997654 31 2222 23344689999999998876654 6789999998 4433222233322211111135
Q ss_pred CeEEEEcCCCcEEEEE--eCCeEEEEeCC--Ccce--eeeeeccCCCCCEEEEEEecCCCEEEEEec-CCeEEEEeC--C
Q 001336 943 DTRVQFHLDQTHLLAV--HETQIAIYEAP--KLEC--LKQFVPREASGPITHATYSCDSQSIYVAFE-EGSVGVLTA--S 1013 (1097)
Q Consensus 943 v~~l~~s~dg~~l~~~--~d~~v~vwd~~--~~~~--~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~-Dg~v~vwd~--~ 1013 (1097)
...++++|||++|.++ ..+.|.+|+++ +++. +..+.. .....+.++++|||++|+++.. ++.|.+|++ +
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence 7889999999999996 56789999994 2333 333332 2345899999999999998875 578999976 4
Q ss_pred CCcee
Q 001336 1014 TLRLR 1018 (1097)
Q Consensus 1014 ~~~~~ 1018 (1097)
+|.+.
T Consensus 325 tG~l~ 329 (345)
T PF10282_consen 325 TGKLT 329 (345)
T ss_dssp TTEEE
T ss_pred CCcEE
Confidence 66654
No 240
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=8.3e-11 Score=125.51 Aligned_cols=284 Identities=16% Similarity=0.232 Sum_probs=182.1
Q ss_pred ceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCE
Q 001336 741 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY 820 (1097)
Q Consensus 741 ~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 820 (1097)
.+..+.|+|-|.+|.+--.- .+|. .+-.....+++|+.+++.... .+......+ ++..|+.|..+
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~---~i~~---------~~~~~~pn~~v~~vet~~~~s-~~q~k~Q~~--W~~qfs~dEsl 139 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPW---AIYG---------PKNASNPNVLVYNVETGVQRS-QIQKKMQNG--WVPQFSIDESL 139 (566)
T ss_pred eeeeeeeccccccccccccc---cccc---------CCCCCCCceeeeeeccceehh-heehhhhcC--cccccccchhh
Confidence 45677788888776543211 0110 000012345677777744322 222111222 58999999888
Q ss_pred EEEEeCCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCC--CEEEE-----EECCCcEEEEEcccceEEEEe--cc-cc
Q 001336 821 VMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDN--NIIAI-----GMEDSSIQIYNVRVDEVKTKL--KG-HQ 890 (1097)
Q Consensus 821 la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~--~~la~-----g~~dg~v~vwd~~~~~~~~~l--~~-h~ 890 (1097)
.|--..+.+.+|++.+.+.+..- -|...|+.+++|| ++ ..+|+ ++.-+.|+||.+.....-..+ +. ..
T Consensus 140 ~arlv~nev~f~~~~~f~~~~~k-l~~~~i~~f~lSp-gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFk 217 (566)
T KOG2315|consen 140 AARLVSNEVQFYDLGSFKTIQHK-LSVSGITMLSLSP-GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFK 217 (566)
T ss_pred hhhhhcceEEEEecCCccceeee-eeccceeeEEecC-CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccc
Confidence 77666889999999875433322 2678899999999 53 34443 344568999987632211111 00 11
Q ss_pred cCeEEEEEecCCCE---EEEEeCCC---------cEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-
Q 001336 891 KRITGLAFSNTLNV---LVSSGADS---------QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA- 957 (1097)
Q Consensus 891 ~~V~~l~~s~dg~~---l~s~~~Dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~- 957 (1097)
..=..+.|++-|.- |++..-|. ++++.++++.+ ..+.... . ++|.++.|+++|+.+++
T Consensus 218 adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s----~~V~L~k--~---GPVhdv~W~~s~~EF~Vv 288 (566)
T KOG2315|consen 218 ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES----VSVPLLK--E---GPVHDVTWSPSGREFAVV 288 (566)
T ss_pred cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce----EEEecCC--C---CCceEEEECCCCCEEEEE
Confidence 11234667776652 33333343 57788877322 2222221 1 67999999999988877
Q ss_pred -E-eCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecC---CeEEEEeCCCCceeeeeCCCCcCCCCCC
Q 001336 958 -V-HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEE---GSVGVLTASTLRLRCRINPTAYLPTNPS 1032 (1097)
Q Consensus 958 -~-~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~D---g~v~vwd~~~~~~~~~~~~~~~~~~~h~ 1032 (1097)
| .-..+.|||++ +..+..+. .++-.++-|+|.|++|+.++-+ |.|.|||+.+.+++..+....
T Consensus 289 yGfMPAkvtifnlr-~~~v~df~----egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~------- 356 (566)
T KOG2315|consen 289 YGFMPAKVTIFNLR-GKPVFDFP----EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN------- 356 (566)
T ss_pred EecccceEEEEcCC-CCEeEeCC----CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-------
Confidence 4 66899999997 55665554 5778899999999999888764 889999999988887777443
Q ss_pred CceeeEEEEEcCCCCCEEEEEec------CCcEEEEecCCC
Q 001336 1033 LRVYPLVIAGNPTDPNQFALGLT------DGGVYIIEPLEA 1067 (1097)
Q Consensus 1033 ~~v~~l~i~~~p~~~~~l~s~~~------Dg~v~~W~~~~~ 1067 (1097)
+..+.|+| ||.+|+|+.. |+.++||+....
T Consensus 357 ----tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 357 ----TTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ----ceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecCc
Confidence 23459999 7888888776 789999998743
No 241
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.48 E-value=1.8e-12 Score=129.23 Aligned_cols=344 Identities=14% Similarity=0.206 Sum_probs=223.4
Q ss_pred CeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEE-ECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCc
Q 001336 550 GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFW-DMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNG 628 (1097)
Q Consensus 550 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~ 628 (1097)
..+++.++|+.+ .++....-|..+-+++.++|.++++| ..+.++....+.. ....+++++.+.++...|++|-..|+
T Consensus 14 p~ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 14 PELLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred hhhhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecce
Confidence 345667788876 77777777888899999999999999 4556666555543 33567889999999999999999998
Q ss_pred EEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCccccc
Q 001336 629 IKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIAD 708 (1097)
Q Consensus 629 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1097)
+.-+.+.........
T Consensus 92 vtefs~sedfnkm~~----------------------------------------------------------------- 106 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTF----------------------------------------------------------------- 106 (404)
T ss_pred EEEEEhhhhhhhcch-----------------------------------------------------------------
Confidence 877765433111100
Q ss_pred ccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCccc
Q 001336 709 EAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLW 788 (1097)
Q Consensus 709 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w 788 (1097)
++.| ..|...+..+.|+-.-.++++.+.|..+. |-..
T Consensus 107 -----~r~~------------------~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~------------------- 143 (404)
T KOG1409|consen 107 -----LKDY------------------LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCT------------------- 143 (404)
T ss_pred -----hhhh------------------hhhhcceeeEEecCCceeEEEeccccceE-EEee-------------------
Confidence 1111 13788899999999999999999986654 3211
Q ss_pred CCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEc--CCCceeEEeCCCCCCeEEEEEeCCCCCEEEE
Q 001336 789 QPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNM--MTFKTMTTFMPPPPAATFLAFHPQDNNIIAI 865 (1097)
Q Consensus 789 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~--~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~ 865 (1097)
+.+..+.... .....+++.+.-. +...|. .|.|.+-.+ .....+.++.+|.+.+++++|.+ ..++|.+
T Consensus 144 --e~~~~lg~Y~----~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfS 214 (404)
T KOG1409|consen 144 --ESGNRLGGYN----FETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFS 214 (404)
T ss_pred --ccCCcccceE----eeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEe
Confidence 1111111000 0111111222111 333444 455544433 45678889999999999999999 8899999
Q ss_pred EECCCcEEEEEcccce-EEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEe-------------
Q 001336 866 GMEDSSIQIYNVRVDE-VKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLT------------- 931 (1097)
Q Consensus 866 g~~dg~v~vwd~~~~~-~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~------------- 931 (1097)
|..|..+.+||+...+ ...++.+|.+.|..+...+--+.|++++.||.|.+|+.+.........+.
T Consensus 215 g~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffw 294 (404)
T KOG1409|consen 215 GASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFW 294 (404)
T ss_pred ccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHH
Confidence 9999999999997654 34678899999999999888899999999999999998764432211100
Q ss_pred ------------ecCCCCCCc-cCCeEEEEcCCCcEEEEEeCCeEEEEeCCCc-------ceeeeeeccCCCCCEEEEEE
Q 001336 932 ------------IPNGRTASA-LADTRVQFHLDQTHLLAVHETQIAIYEAPKL-------ECLKQFVPREASGPITHATY 991 (1097)
Q Consensus 932 ------------~~~~~~~~~-~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~-------~~~~~~~~~~h~~~v~~v~~ 991 (1097)
+...+.... ..+...+-|....+...+.+-.+++-|.-.. ..++.+. .-...|+.+.+
T Consensus 295 n~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~ph--ei~tgItamhl 372 (404)
T KOG1409|consen 295 NFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPH--EIKTGITAMHL 372 (404)
T ss_pred HHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccc--ccccceeEEEh
Confidence 000010000 1111222222222223344444555443211 1122222 11457999999
Q ss_pred ecCCCEEEEEecCCeEEEEeCCC
Q 001336 992 SCDSQSIYVAFEEGSVGVLTAST 1014 (1097)
Q Consensus 992 s~dg~~l~s~s~Dg~v~vwd~~~ 1014 (1097)
..+-.+|+|++.|..|+|||+.+
T Consensus 373 qetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 373 QETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred hhhccceeecCCceEEEEEechh
Confidence 99999999999999999999865
No 242
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.47 E-value=4.6e-11 Score=125.61 Aligned_cols=283 Identities=14% Similarity=0.105 Sum_probs=189.4
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
...++..+.|||.|++| ++. .-..|.+|.-.....+.. -....|..+.|||+++||.
T Consensus 31 ~~~p~~~~~~SP~G~~l-~~~-~~~~V~~~~g~~~~~l~~---------------------~~~~~V~~~~fSP~~kYL~ 87 (561)
T COG5354 31 ENWPVAYVSESPLGTYL-FSE-HAAGVECWGGPSKAKLVR---------------------FRHPDVKYLDFSPNEKYLV 87 (561)
T ss_pred cCcchhheeecCcchhe-ehh-hccceEEccccchhheee---------------------eecCCceecccCcccceee
Confidence 45578899999999975 443 344599998876654432 1235799999999999999
Q ss_pred EEECCC---------------EEEEEEccCCeeeeeeeeeecccCc--EE-EEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001336 398 VAYSKH---------------IVHLYTYHGGDELRNHLEIEAHVGS--VN-DLAFSYPNKQLSVVTCGEDRVIKVWDAVT 459 (1097)
Q Consensus 398 s~~~dg---------------~i~iwd~~~~~~~~~~~~l~~h~~~--V~-~l~~s~d~~~~~l~s~s~d~~i~iwd~~~ 459 (1097)
+=+..+ .+.+||+.+|..+.. +.+...+ .+ -+.|+-+++ +++-- ....++|+++ +
T Consensus 88 tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~s---f~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~-t 160 (561)
T COG5354 88 TWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFS---FNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEI-T 160 (561)
T ss_pred eeccCCccChhhccCCccccCceeEEeccCceeEee---ccccCCcccccceeeeeecch--hhhhh-ccCeEEEEec-C
Confidence 965433 499999999986653 4444444 45 688999988 33333 3457999997 4
Q ss_pred Ccee-EEeecC-CcCeEEEeecccCCccEEEE-----EcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEe
Q 001336 460 GTKQ-YIFEGH-ESPVYSICPHHKENIQFIFS-----TATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC 532 (1097)
Q Consensus 460 ~~~~-~~~~~h-~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 532 (1097)
+... ..+..- ...|....|+|..++..|+. .+.++++++|.+...........-...-..+.|.+.|++|+.-
T Consensus 161 ~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 161 DNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVL 240 (561)
T ss_pred CccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEE
Confidence 4322 111111 24566777777766666554 4667889999888555544443333344568899999987754
Q ss_pred eeC-------CCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEecCC
Q 001336 533 GTN-------KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADG 603 (1097)
Q Consensus 533 ~~~-------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~ 603 (1097)
... --++..+.++++....+.-.. ... ++|...+|.|.++.+++.+ .+..+.++|++.. +...+.
T Consensus 241 ~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~-~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--- 314 (561)
T COG5354 241 VMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLK-DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--- 314 (561)
T ss_pred EEEeeecccceeccceEEEEeecccccceec-ccc-ccceeeeecccCCceeEEecccccceeecccccc-eEEecC---
Confidence 321 112456788888744332222 223 3899999999998877665 7788999999865 444443
Q ss_pred CCCCcceEEEcCCCCEEEEEECC---CcEEEEEcCCC
Q 001336 604 GLQASPCIRFNKEGILLAVSTND---NGIKILANADG 637 (1097)
Q Consensus 604 ~~~~v~~v~~s~~~~~l~s~~~d---g~i~iw~~~~~ 637 (1097)
...=+.+.|+|.+++++.++-| |.+-+|+....
T Consensus 315 -e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 315 -EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred -CcccccccccCcccEEEEecCCccccceEEeccCCc
Confidence 2344688999999999997765 57888887655
No 243
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=8e-12 Score=143.32 Aligned_cols=236 Identities=13% Similarity=0.136 Sum_probs=151.9
Q ss_pred cceeecCCCCceEEEEeecCCCeeEEEEccCCCeEEEEEeC--CCeEEEEEcCCCceeeeeeeeEeeccccCcccccccc
Q 001336 300 QSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTN--MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLS 377 (1097)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (1097)
+..++.+.. .......+...+.+.+|+|||++|+.+... ...|.+||+.+++... +
T Consensus 186 l~i~D~~g~--~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l 243 (433)
T PRK04922 186 LQVADSDGY--NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------V 243 (433)
T ss_pred EEEECCCCC--CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------e
Confidence 444444432 222333477789999999999987655433 3479999998876532 2
Q ss_pred CCCCCCeEEEEEccCCCEEEE-EECCC--EEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEe-CCCc--
Q 001336 378 SDYTASVNRVMWSPDGTLFGV-AYSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRV-- 451 (1097)
Q Consensus 378 ~~h~~~V~~v~~spd~~~las-~~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s-~d~~-- 451 (1097)
....+...+++|||||+.|+. .+.+| .|++||+.+++... +..+.......+|+|||+ .|+..+ .++.
T Consensus 244 ~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~----lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~ 317 (433)
T PRK04922 244 ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR----LTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQ 317 (433)
T ss_pred ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE----CccCCCCccceEECCCCC--EEEEEECCCCCce
Confidence 233344567899999998864 45555 69999998876432 555665667889999999 455544 4444
Q ss_pred EEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCC---eEEEEEcCCCCceeeecCCCCceEEEEEccCCCE
Q 001336 452 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDG---KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGAR 528 (1097)
Q Consensus 452 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 528 (1097)
|+++|+.+++... +..+.......+| +++|+.|+..+.++ .|.+||+.++... .+. +........|+|||+.
T Consensus 318 iy~~dl~~g~~~~-lt~~g~~~~~~~~--SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~ 392 (433)
T PRK04922 318 IYRVAASGGSAER-LTFQGNYNARASV--SPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSM 392 (433)
T ss_pred EEEEECCCCCeEE-eecCCCCccCEEE--CCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCE
Confidence 7777877776433 2223333445677 55667777654332 6899998766544 332 2234556799999999
Q ss_pred EEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcC
Q 001336 529 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT 571 (1097)
Q Consensus 529 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 571 (1097)
++..+..+ +...|.+++... ...+.+..+.. .+...+|+|
T Consensus 393 i~~~s~~~-g~~~L~~~~~~g-~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 393 VLYATREG-GRGVLAAVSTDG-RVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred EEEEEecC-CceEEEEEECCC-CceEEcccCCC-CCCCCccCC
Confidence 98887653 456788998854 34444443332 455566665
No 244
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=1.2e-11 Score=131.37 Aligned_cols=197 Identities=12% Similarity=0.206 Sum_probs=157.6
Q ss_pred eEEEEc-cCCCEEEEEeCCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEec-
Q 001336 810 PCFALS-KNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK- 887 (1097)
Q Consensus 810 ~~l~~s-~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~- 887 (1097)
..++++ |.-.+++.|+...|+-++++.|+-+..+....+.++++..++ ...+|++|+.+|.|..||..+...+..+.
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~ 215 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDA 215 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeec
Confidence 345555 445566777788899999999999999998889999999999 88899999999999999998765554443
Q ss_pred -----cccc-----CeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCC--CcEE
Q 001336 888 -----GHQK-----RITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD--QTHL 955 (1097)
Q Consensus 888 -----~h~~-----~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d--g~~l 955 (1097)
.|.+ .|+++.|+.||-.+++|..+|.|.|||+.+.+. +.+..... ..+|..+.|.+. +..+
T Consensus 216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p-----l~~kdh~~--e~pi~~l~~~~~~~q~~v 288 (703)
T KOG2321|consen 216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP-----LLVKDHGY--ELPIKKLDWQDTDQQNKV 288 (703)
T ss_pred ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc-----eeecccCC--ccceeeecccccCCCceE
Confidence 3443 399999999999999999999999999998552 22222111 156888999665 4566
Q ss_pred EEEeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCce
Q 001336 956 LAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRL 1017 (1097)
Q Consensus 956 ~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~ 1017 (1097)
++.....++|||-.+|+....+.. ...+..+|+-|++.+++++-+++.+..|-++..-.
T Consensus 289 ~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGP 347 (703)
T KOG2321|consen 289 VSMDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGP 347 (703)
T ss_pred EecchHHhhhcccccCCceeeccc---cCCcCceeeecCCceEEEecCCCcceeEEccccCC
Confidence 666778999999999999888864 45699999999999999999999888888776543
No 245
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.45 E-value=2.4e-13 Score=140.56 Aligned_cols=231 Identities=14% Similarity=0.119 Sum_probs=184.0
Q ss_pred CCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEE
Q 001336 806 EDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKT 884 (1097)
Q Consensus 806 ~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~ 884 (1097)
....+.+.++.+|++|+.++ .|.|-.+|..++++...+. -...|..+.|-. +.+++|++- ...++||| ..|..++
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LH-neq~~AVAQ-K~y~yvYD-~~GtElH 204 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLH-NEQFFAVAQ-KKYVYVYD-NNGTELH 204 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhc-chHHHHhhh-hceEEEec-CCCcEEe
Confidence 45567899999999999998 8999999999999888875 456789999988 788888874 67899999 5688889
Q ss_pred EecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeE
Q 001336 885 KLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQI 963 (1097)
Q Consensus 885 ~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v 963 (1097)
.++.| .+|..+.|-|..-+|++++..|.++.-|+.+|+.... +.... +.+..++-.|-...+-+| ..|+|
T Consensus 205 Clk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~--~~t~~------G~~~vm~qNP~NaVih~GhsnGtV 275 (545)
T KOG1272|consen 205 CLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS--IRTGA------GRTDVMKQNPYNAVIHLGHSNGTV 275 (545)
T ss_pred ehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHH--HHccC------CccchhhcCCccceEEEcCCCceE
Confidence 99877 4599999999999999999999999999999874331 11111 456778888888888886 78999
Q ss_pred EEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEc
Q 001336 964 AIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGN 1043 (1097)
Q Consensus 964 ~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~ 1043 (1097)
.+|.....+.+..+. .|.++|.++++.++|+|+||++.|..++|||+..-..+..+..+. | ...+ +++
T Consensus 276 SlWSP~skePLvKiL--cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~--~------a~~l--s~S 343 (545)
T KOG1272|consen 276 SLWSPNSKEPLVKIL--CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH--P------ASNL--SLS 343 (545)
T ss_pred EecCCCCcchHHHHH--hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC--C------cccc--ccc
Confidence 999999999888777 799999999999999999999999999999999877655544221 1 1233 332
Q ss_pred CCCCCEEEEEecCCcEEEEec
Q 001336 1044 PTDPNQFALGLTDGGVYIIEP 1064 (1097)
Q Consensus 1044 p~~~~~l~s~~~Dg~v~~W~~ 1064 (1097)
+..+|+.+-.| .|.+|.=
T Consensus 344 --qkglLA~~~G~-~v~iw~d 361 (545)
T KOG1272|consen 344 --QKGLLALSYGD-HVQIWKD 361 (545)
T ss_pred --cccceeeecCC-eeeeehh
Confidence 34455555544 6899954
No 246
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=2.7e-10 Score=116.08 Aligned_cols=277 Identities=10% Similarity=0.094 Sum_probs=185.0
Q ss_pred ccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccC---cEEEEeccCCCCCCccCccccccCCcc
Q 001336 711 VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN---AVHKLWKWPRNERNSTGKATTNQAPQL 787 (1097)
Q Consensus 711 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~ 787 (1097)
++.|..|+++.....-.... . -......+-++++|+++.|.++..+ |.|..|.++
T Consensus 15 s~gI~v~~ld~~~g~l~~~~--~--v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD------------------ 72 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ--L--VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRID------------------ 72 (346)
T ss_pred CCceEEEEEeCcccccchhh--h--ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEc------------------
Confidence 46788998874322211111 1 1256778899999999988887764 666666543
Q ss_pred cCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEcCC-CceeEE--eCCCCCC----------eEE
Q 001336 788 WQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMTT--FMPPPPA----------ATF 852 (1097)
Q Consensus 788 w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~-~~~~~~--~~~~~~~----------i~~ 852 (1097)
..+|++....-.. ....+.+.++++++|++++++. .|.|.++-+.. |.+... ...|.+. +..
T Consensus 73 --~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 73 --PDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred --CCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 3444432211100 0234448899999999999998 68999999855 432221 1224433 888
Q ss_pred EEEeCCCCCEEEEEEC-CCcEEEEEcccceEEE----EecccccCeEEEEEecCCCEEEEEeC-CCcEEEEEcCC--Ccc
Q 001336 853 LAFHPQDNNIIAIGME-DSSIQIYNVRVDEVKT----KLKGHQKRITGLAFSNTLNVLVSSGA-DSQLCVWSTDG--WEK 924 (1097)
Q Consensus 853 l~~sp~~~~~la~g~~-dg~v~vwd~~~~~~~~----~l~~h~~~V~~l~~s~dg~~l~s~~~-Dg~i~iwd~~~--~~~ 924 (1097)
..+.| ++++|++.+- --.|.+|++..|++.. .++ ....-+.|.|+|++++.....+ +++|.+|..+. ++.
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~ 227 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF 227 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE
Confidence 99999 8888887752 2369999999876432 222 2344588999999999887665 89999999987 444
Q ss_pred cceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE--eCCeEEEEeCCCcce-eeee-eccCCCCCEEEEEEecCCCEEEE
Q 001336 925 QASKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLEC-LKQF-VPREASGPITHATYSCDSQSIYV 1000 (1097)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~--~d~~v~vwd~~~~~~-~~~~-~~~~h~~~v~~v~~s~dg~~l~s 1000 (1097)
.....+...........+...+.+++||++|.++ ....|.+|.+..... +... ....+....+...|+++|++|++
T Consensus 228 ~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Lia 307 (346)
T COG2706 228 EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIA 307 (346)
T ss_pred EEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEE
Confidence 4444444444444444678899999999999997 345888888764322 2111 11133445789999999999999
Q ss_pred EecC-CeEEEEeCCC
Q 001336 1001 AFEE-GSVGVLTAST 1014 (1097)
Q Consensus 1001 ~s~D-g~v~vwd~~~ 1014 (1097)
+.+| ..|.||..+.
T Consensus 308 a~q~sd~i~vf~~d~ 322 (346)
T COG2706 308 ANQKSDNITVFERDK 322 (346)
T ss_pred EccCCCcEEEEEEcC
Confidence 9986 5688998754
No 247
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.5e-10 Score=123.53 Aligned_cols=331 Identities=15% Similarity=0.173 Sum_probs=204.6
Q ss_pred CCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEE-----eC-----CC
Q 001336 514 GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAA-----GD-----EF 583 (1097)
Q Consensus 514 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~-----dg 583 (1097)
...+...+++++|++++.+. +..+.|++..+...+.+.... .+..+.|+|.+++|.+- .. .-
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~p 105 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKNASNP 105 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCCCCCC
Confidence 33567889999999999875 335899998888544433332 57889999999988762 11 24
Q ss_pred cEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCC
Q 001336 584 MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAP 663 (1097)
Q Consensus 584 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (1097)
.+.+|++.++.....+......+ .+..|+.|..+.| --..+.+.+|+..+-......+........
T Consensus 106 n~~v~~vet~~~~s~~q~k~Q~~--W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~kl~~~~i~~f----------- 171 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKKMQNG--WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHKLSVSGITML----------- 171 (566)
T ss_pred ceeeeeeccceehhheehhhhcC--cccccccchhhhh-hhhcceEEEEecCCccceeeeeeccceeeE-----------
Confidence 57899999976666665432222 5888998765433 233457899998775444444332211110
Q ss_pred cccccccCccccccccccccccccccccCCCCCCCccccCccccccccccccccccccc--CCCceeeEeccCCCcCccc
Q 001336 664 AIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEI--TEPSQCRSLRLPDNLTAMR 741 (1097)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~--~~~~~~~~~~~~~~~~~~~ 741 (1097)
.++|.. ....+..+.++... .-..+++|..... ......+.+ ....
T Consensus 172 ----------~lSpgp-----~~~~vAvyvPe~kG-----------aPa~vri~~~~~~~~~~~~a~ksF------Fkad 219 (566)
T KOG2315|consen 172 ----------SLSPGP-----EPPFVAVYVPEKKG-----------APASVRIYKYPEEGQHQPVANKSF------FKAD 219 (566)
T ss_pred ----------EecCCC-----CCceEEEEccCCCC-----------CCcEEEEeccccccccchhhhccc------cccc
Confidence 122211 11122223332221 2245666665511 111111111 1122
Q ss_pred eEEEEEccCCceeeee-cc--CcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCC
Q 001336 742 VSRLIYTNSGLAILAL-AS--NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND 818 (1097)
Q Consensus 742 i~~l~~spdg~~l~~~-~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 818 (1097)
=..+.|++-|.-|+.. +. |.+ +.......++.+.++. |.-....+. ..++|.++.|+++|
T Consensus 220 kvqm~WN~~gt~LLvLastdVDkt-------------n~SYYGEq~Lyll~t~-g~s~~V~L~---k~GPVhdv~W~~s~ 282 (566)
T KOG2315|consen 220 KVQMKWNKLGTALLVLASTDVDKT-------------NASYYGEQTLYLLATQ-GESVSVPLL---KEGPVHDVTWSPSG 282 (566)
T ss_pred eeEEEeccCCceEEEEEEEeecCC-------------CccccccceEEEEEec-CceEEEecC---CCCCceEEEECCCC
Confidence 2345666666543322 22 211 1112222233344444 333333343 47999999999999
Q ss_pred CEEEEEe---CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECC---CcEEEEEcccceEEEEecccccC
Q 001336 819 SYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED---SSIQIYNVRVDEVKTKLKGHQKR 892 (1097)
Q Consensus 819 ~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~d---g~v~vwd~~~~~~~~~l~~h~~~ 892 (1097)
+-+++.. -.++.|+|+ .+..+..+ ..++-+++-|+| .|++|+.++-+ |.+.|||+.+.+++..+..-..
T Consensus 283 ~EF~VvyGfMPAkvtifnl-r~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t- 357 (566)
T KOG2315|consen 283 REFAVVYGFMPAKVTIFNL-RGKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT- 357 (566)
T ss_pred CEEEEEEecccceEEEEcC-CCCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCCc-
Confidence 9888876 378999998 45565555 577888999999 89999888755 6999999999888888876554
Q ss_pred eEEEEEecCCCEEEEEeC------CCcEEEEEcCC
Q 001336 893 ITGLAFSNTLNVLVSSGA------DSQLCVWSTDG 921 (1097)
Q Consensus 893 V~~l~~s~dg~~l~s~~~------Dg~i~iwd~~~ 921 (1097)
+-+.|+|||++++|+.. |..++||++..
T Consensus 358 -t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 358 -TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred -eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 45789999999998775 67899999887
No 248
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=4.5e-11 Score=126.55 Aligned_cols=314 Identities=11% Similarity=0.172 Sum_probs=206.4
Q ss_pred eeeCCCCCCcceeecCCC------CceEEEEeecCCCeeEEEEccCCCeEEEEEe----------CCCeEEEEEcCCCce
Q 001336 291 VAYTPQSLGQSSYSTDDL------PKTVVMTLNQGSAVKSMDFHPVQQILLVVGT----------NMGDVMLWEVGSRER 354 (1097)
Q Consensus 291 ~~~s~~~~~~~~~~~~~~------~~~~~~~~~h~~~V~~v~fspdg~~lla~gs----------~dg~i~iwd~~~~~~ 354 (1097)
+.|||.|.++.+.-..+. .-..++.|.| -.|.-+.|||+.+||+.-+. ....++|||+.+|..
T Consensus 216 v~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~l 294 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLL 294 (698)
T ss_pred EEecCCceEEEEEeccceeeecCccHHHHHhccC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccch
Confidence 669999999888765554 1223344444 46889999999998754331 125799999999987
Q ss_pred eeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEE
Q 001336 355 IAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF 434 (1097)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 434 (1097)
...... +.+....=.-..||.|++|+|.-..| .|.||+..+-..+.. ..+ .-..|....|
T Consensus 295 krsF~~----------------~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~-Ksl--ki~gIr~Fsw 354 (698)
T KOG2314|consen 295 KRSFPV----------------IKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDK-KSL--KISGIRDFSW 354 (698)
T ss_pred hcceec----------------cCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecc-ccc--CCccccCccc
Confidence 654221 11121222346899999999998775 489999876432221 111 2345888999
Q ss_pred ecCCCcEEEEEEeC--C---CcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEE----------cCCCeEEEE
Q 001336 435 SYPNKQLSVVTCGE--D---RVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST----------ATDGKIKAW 499 (1097)
Q Consensus 435 s~d~~~~~l~s~s~--d---~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------~~dg~i~iw 499 (1097)
+|.+. +|+-=.. + ..+.+-.+.+++.+++-.-|. |..+..+...+|.+|+.- +.-..+.|+
T Consensus 355 sP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIf 430 (698)
T KOG2314|consen 355 SPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIF 430 (698)
T ss_pred CCCcc--eEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEE
Confidence 99988 5553322 1 256677777777777655443 555555667777777642 222345677
Q ss_pred EcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCC-C---eeeEEecCCCCcceEEEEEcCCCCE
Q 001336 500 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE-G---AVKRTYHGLGKRSVGVVQFDTTKNR 575 (1097)
Q Consensus 500 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~---~~~~~~~~~~~~~v~~~~~~~~~~~ 575 (1097)
.++..........-...|...+|-|.|+.+++.+.+ +...++.+|..++ . +++..+.. ...+.+.|+|.|++
T Consensus 431 rireKdIpve~velke~vi~FaWEP~gdkF~vi~g~-~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG~f 506 (698)
T KOG2314|consen 431 RIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN-TVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKGRF 506 (698)
T ss_pred EeeccCCCceeeecchheeeeeeccCCCeEEEEEcc-ccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCCcE
Confidence 777666555544445678899999999988887654 3466788888773 2 34444443 25678999999999
Q ss_pred EEEEe---CCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECC------CcEEEEEcC
Q 001336 576 FLAAG---DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND------NGIKILANA 635 (1097)
Q Consensus 576 l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d------g~i~iw~~~ 635 (1097)
++.+. ..|.+.++|+....+..+-.. . ....+.+.|.|.|+++++++.- ..-+||++.
T Consensus 507 vvva~l~s~~g~l~F~D~~~a~~k~~~~~-e-h~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 507 VVVAALVSRRGDLEFYDTDYADLKDTASP-E-HFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred EEEEEecccccceEEEecchhhhhhccCc-c-ccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 98865 578999999885333222211 2 2345789999999999998753 344555543
No 249
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=2.1e-11 Score=139.31 Aligned_cols=224 Identities=17% Similarity=0.184 Sum_probs=144.1
Q ss_pred EeecCCCeeEEEEccCCCeEEEEEeCC--CeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccC
Q 001336 315 TLNQGSAVKSMDFHPVQQILLVVGTNM--GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 392 (1097)
Q Consensus 315 ~~~h~~~V~~v~fspdg~~lla~gs~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 392 (1097)
...+...+.+.+|||||+.|+.+...+ ..|.+||+.+++... +....+.+.+.+||||
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~~~SPD 250 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAPAWSPD 250 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEECCC
Confidence 345778899999999999876554333 469999999886533 2223345668999999
Q ss_pred CCEEEE-EECCCEEEEEEc--cCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEe-CCCcEEEEE--CCCCceeEEe
Q 001336 393 GTLFGV-AYSKHIVHLYTY--HGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWD--AVTGTKQYIF 466 (1097)
Q Consensus 393 ~~~las-~~~dg~i~iwd~--~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s-~d~~i~iwd--~~~~~~~~~~ 466 (1097)
|+.|+. .+.+|...||.+ .++. .. .+..+...+....|+|||+. |+..+ .++...+|. +.+++... +
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~--l~f~s~~~g~~~Iy~~~~~~g~~~~-l 323 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS--IYFTSDRGGAPQIYRMPASGGAAQR-V 323 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE--EEEEecCCCCcEEEEEECCCCceEE-E
Confidence 998875 567777666654 4443 23 25556666677899999994 44444 455556664 44554322 2
Q ss_pred ecCCcCeEEEeecccCCccEEEEEcCCC---eEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEE
Q 001336 467 EGHESPVYSICPHHKENIQFIFSTATDG---KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 543 (1097)
Q Consensus 467 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 543 (1097)
..+.......+| +++|++|+..+.++ .|.+||+.+++..... .........|+|||+.|+..+.++ +...+.
T Consensus 324 t~~g~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt--~~~~~~~p~~spdg~~l~~~~~~~-g~~~l~ 398 (427)
T PRK02889 324 TFTGSYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQVTALT--DTTRDESPSFAPNGRYILYATQQG-GRSVLA 398 (427)
T ss_pred ecCCCCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc--CCCCccCceECCCCCEEEEEEecC-CCEEEE
Confidence 222223334566 56778887766544 6999999876544322 223446789999999999988654 345677
Q ss_pred EEeCCCCeeeEEecCCCCcceEEEEEcCC
Q 001336 544 EWNESEGAVKRTYHGLGKRSVGVVQFDTT 572 (1097)
Q Consensus 544 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~ 572 (1097)
+.+. .+...+.+..+.. .+...+|+|-
T Consensus 399 ~~~~-~g~~~~~l~~~~g-~~~~p~wsp~ 425 (427)
T PRK02889 399 AVSS-DGRIKQRLSVQGG-DVREPSWGPF 425 (427)
T ss_pred EEEC-CCCceEEeecCCC-CCCCCccCCC
Confidence 7777 4555555544333 5566677663
No 250
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=2.1e-11 Score=124.08 Aligned_cols=273 Identities=11% Similarity=0.114 Sum_probs=189.9
Q ss_pred cCCCeeEEEEccCCCeEEEEEe-CCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGT-NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 396 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 396 (1097)
....|+.++|--|++.=+..+. .|-.+............. .|+.. .....+..|..++.. ...|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg~L 118 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DGTL 118 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CCEE
Confidence 4567778888776654334444 555566666655543322 11111 133445566666553 3467
Q ss_pred EEEECCCEEEEEEccCCeeeee-eeeeecccCcEEEEEEecCCCcEEEEEEeCC--CcEEEEECCCCceeEEeecC----
Q 001336 397 GVAYSKHIVHLYTYHGGDELRN-HLEIEAHVGSVNDLAFSYPNKQLSVVTCGED--RVIKVWDAVTGTKQYIFEGH---- 469 (1097)
Q Consensus 397 as~~~dg~i~iwd~~~~~~~~~-~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d--~~i~iwd~~~~~~~~~~~~h---- 469 (1097)
.+|-.+|.+.+|..+.+..-.. ...+..+ ..+..|.-++...+ ++++|+.. ..+.+||+++.+.+.+-+.-
T Consensus 119 itc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~ 196 (412)
T KOG3881|consen 119 ITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDR 196 (412)
T ss_pred EEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCcc
Confidence 7888999999999985431110 1113223 45777777777775 67779998 89999999988665443221
Q ss_pred ---C--cCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCce-eeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEE
Q 001336 470 ---E--SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR-VDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 543 (1097)
Q Consensus 470 ---~--~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 543 (1097)
. -.++++.|.+..+...+++++.-+.+++||.+.+... ..+.....+++++...|+|++++++.. .+.+.
T Consensus 197 L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~ 272 (412)
T KOG3881|consen 197 LGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLA 272 (412)
T ss_pred ccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhh
Confidence 1 2345667765544689999999999999999876554 456667789999999999999999854 44699
Q ss_pred EEeCCCCeeeEE-ecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcC
Q 001336 544 EWNESEGAVKRT-YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 615 (1097)
Q Consensus 544 ~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 615 (1097)
.+|++.++.... +.+..+ .++++..+|.+.+++++|-|..|+|+|+.+.+++...-. ....+++-+.+
T Consensus 273 ~FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv---Ks~lt~il~~~ 341 (412)
T KOG3881|consen 273 KFDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV---KSRLTFILLRD 341 (412)
T ss_pred eecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh---hccccEEEecC
Confidence 999999998877 666665 899999999999999999999999999999877766543 22345555544
No 251
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=9.1e-11 Score=134.83 Aligned_cols=236 Identities=12% Similarity=0.054 Sum_probs=152.6
Q ss_pred cceeecCCCCceEEEEeecCCCeeEEEEccCCCeEEEEEeC--CCeEEEEEcCCCceeeeeeeeEeeccccCcccccccc
Q 001336 300 QSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTN--MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLS 377 (1097)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (1097)
|.+++.++ ........+...+.+.+|||||++|+.+... +..|.+||+.+++... +
T Consensus 184 l~~~d~dg--~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l 241 (435)
T PRK05137 184 LAIMDQDG--ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------V 241 (435)
T ss_pred EEEECCCC--CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------e
Confidence 44444443 2222333477899999999999987655432 4689999998886532 3
Q ss_pred CCCCCCeEEEEEccCCCEEEE-EECCC--EEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEe-CCC--c
Q 001336 378 SDYTASVNRVMWSPDGTLFGV-AYSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDR--V 451 (1097)
Q Consensus 378 ~~h~~~V~~v~~spd~~~las-~~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s-~d~--~ 451 (1097)
..+.+.+.+.+|||||+.|+. .+.++ .|.+||+.+++.. .+..+........|+|||+ .|+..+ .++ .
T Consensus 242 ~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~--~i~f~s~~~g~~~ 315 (435)
T PRK05137 242 GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGS--QIVFESDRSGSPQ 315 (435)
T ss_pred ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCC--EEEEEECCCCCCe
Confidence 345567788999999998764 45555 4777888887643 2555666678899999999 455544 333 6
Q ss_pred EEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCC---CeEEEEEcCCCCceeeecCCCCceEEEEEccCCCE
Q 001336 452 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATD---GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGAR 528 (1097)
Q Consensus 452 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 528 (1097)
|++||+.+++.. .+..+...+....| +++|+.|+..+.+ ..|.+||+...... .+. ....+..+.|+|||+.
T Consensus 316 Iy~~d~~g~~~~-~lt~~~~~~~~~~~--SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~~ 390 (435)
T PRK05137 316 LYVMNADGSNPR-RISFGGGRYSTPVW--SPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGRV 390 (435)
T ss_pred EEEEECCCCCeE-EeecCCCcccCeEE--CCCCCEEEEEEcCCCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCCE
Confidence 888898766544 34334455566667 5566777766543 36778887544332 222 2335678899999999
Q ss_pred EEEeeeCCCCC--ceEEEEeCCCCeeeEEecCCCCcceEEEEEcC
Q 001336 529 LFSCGTNKEGE--SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT 571 (1097)
Q Consensus 529 l~~~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 571 (1097)
|+..+.+.... ..+.++|+..+.. +.+.. .. .+...+|+|
T Consensus 391 i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~-~~~~p~Wsp 432 (435)
T PRK05137 391 IMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PG-DASDPAWSP 432 (435)
T ss_pred EEEEEccCCCCCcceEEEEECCCCce-EEccC-CC-CccCcccCC
Confidence 98876543221 4688888876544 33332 11 345556665
No 252
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.38 E-value=1.3e-10 Score=116.03 Aligned_cols=357 Identities=15% Similarity=0.243 Sum_probs=215.0
Q ss_pred cCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-----eeEEeecCC------------cCeEEEeecccCCccEEE
Q 001336 426 VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-----KQYIFEGHE------------SPVYSICPHHKENIQFIF 488 (1097)
Q Consensus 426 ~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~-----~~~~~~~h~------------~~v~~~~~~~~~~~~~l~ 488 (1097)
..-|.++.|...|. +|+||..+|.|.++.-.... ....++.|. ..|..+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 45689999999999 89999999999999743222 223455553 357778888888888888
Q ss_pred EEcCCCeEEEEEcCCCCceee-----ecCCCCceEEEEE---ccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCC
Q 001336 489 STATDGKIKAWLYDNLGSRVD-----YDAPGHSSTMMAY---SADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG 560 (1097)
Q Consensus 489 s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~v~~~~~---s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 560 (1097)
..+.|.+|++|.+........ .......++++.. .+....+ ...+.+.+...+
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~v-------------------ea~prRv~aNaH 163 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEV-------------------EASPRRVYANAH 163 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeecccccee-------------------eeeeeeeccccc
Confidence 889999999998875444331 1111112222221 1111111 123445555545
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEecCCC-----CCCcceEEEcC-CCCEEEEEECCCcEEEEE
Q 001336 561 KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV-NLLASIDADGG-----LQASPCIRFNK-EGILLAVSTNDNGIKILA 633 (1097)
Q Consensus 561 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~-----~~~v~~v~~s~-~~~~l~s~~~dg~i~iw~ 633 (1097)
...|.++.++.|+..++++ +|=.|.+|+++-- +....+....+ ..-|++..|+| ...+++..+..|+|++-|
T Consensus 164 tyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred eeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 5589999999998887776 4678999998742 22222221111 22478899999 446788888899999999
Q ss_pred cCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccc
Q 001336 634 NADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEK 713 (1097)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 713 (1097)
+....-+. ..
T Consensus 243 mR~~aLCd----------------------------------------------------------------------~h 252 (433)
T KOG1354|consen 243 MRQSALCD----------------------------------------------------------------------AH 252 (433)
T ss_pred chhhhhhc----------------------------------------------------------------------ch
Confidence 86441000 00
Q ss_pred cccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCC
Q 001336 714 SRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSG 793 (1097)
Q Consensus 714 i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~ 793 (1097)
-+++... . .|..+
T Consensus 253 sKlfEep--------------e------------dp~~r----------------------------------------- 265 (433)
T KOG1354|consen 253 SKLFEEP--------------E------------DPSSR----------------------------------------- 265 (433)
T ss_pred hhhhccc--------------c------------CCcch-----------------------------------------
Confidence 0111100 0 00000
Q ss_pred ccccccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEc-CCCceeEEeCCCC------------CCe---EEEEEeC
Q 001336 794 ILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNM-MTFKTMTTFMPPP------------PAA---TFLAFHP 857 (1097)
Q Consensus 794 ~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sdg~i~iwd~-~~~~~~~~~~~~~------------~~i---~~l~~sp 857 (1097)
.. +.+ --..|..+.|+++|+++++-+--+|++||+ ...+++.++..|. ..| ..++|+.
T Consensus 266 sf----fse--iIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 266 SF----FSE--IISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred hh----HHH--HhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 00 000 234577889999999998888889999998 4556666665543 122 4578988
Q ss_pred CCCCEEEEEECCCcEEEEEcccceEE-EEecccccC--eEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecC
Q 001336 858 QDNNIIAIGMEDSSIQIYNVRVDEVK-TKLKGHQKR--ITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPN 934 (1097)
Q Consensus 858 ~~~~~la~g~~dg~v~vwd~~~~~~~-~~l~~h~~~--V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~ 934 (1097)
++.++++|+....+++|++..|... .++..-... ...+ ..-+.+.+++......+|-.. ..
T Consensus 340 -~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd~------------ld 403 (433)
T KOG1354|consen 340 -NDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVDA------------LD 403 (433)
T ss_pred -CcceEecccccceEEEecCCCCcceeecccccccCCccccc---ccceeeecCCCccccccccch------------hh
Confidence 7889999999999999997766422 222221111 1111 112334444444332221100 00
Q ss_pred CCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEe
Q 001336 935 GRTASALADTRVQFHLDQTHLLAVHETQIAIYE 967 (1097)
Q Consensus 935 ~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd 967 (1097)
.. .-+...+|+|..+.+|++.-+.++||.
T Consensus 404 f~----kkilh~aWhp~en~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 404 FR----KKILHTAWHPKENSIAVAATNNLYIFQ 432 (433)
T ss_pred hh----hHHHhhccCCccceeeeeecCceEEec
Confidence 00 125668999999999998777787764
No 253
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.38 E-value=3.9e-11 Score=119.66 Aligned_cols=155 Identities=12% Similarity=0.226 Sum_probs=108.6
Q ss_pred EEEEEeCCCCCEEEEEEC----------CCcEEEEEccc-ceEEEEecc-cccCeEEEEEecCCCEEEEE--eCCCcEEE
Q 001336 851 TFLAFHPQDNNIIAIGME----------DSSIQIYNVRV-DEVKTKLKG-HQKRITGLAFSNTLNVLVSS--GADSQLCV 916 (1097)
Q Consensus 851 ~~l~~sp~~~~~la~g~~----------dg~v~vwd~~~-~~~~~~l~~-h~~~V~~l~~s~dg~~l~s~--~~Dg~i~i 916 (1097)
..+.|++ .|.+|++-.. -+...+|.++. +..+..+.- ..++|.+++|+|+|+.+|+. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4567888 6665554332 12355555532 223333332 34579999999999987654 45789999
Q ss_pred EEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEe----CCeEEEEeCCCcceeeeeeccCCCCCEEEEEEe
Q 001336 917 WSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVH----ETQIAIYEAPKLECLKQFVPREASGPITHATYS 992 (1097)
Q Consensus 917 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~----d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s 992 (1097)
||++. + ....... ..+..+.|||+|++|+++. .|.|.+||.++.+.+.... ...++.++||
T Consensus 88 yd~~~-~----~i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~Ws 152 (194)
T PF08662_consen 88 YDVKG-K----KIFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWS 152 (194)
T ss_pred EcCcc-c----EeEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEc
Confidence 99973 1 1222222 3467899999999999942 4789999999888887764 3458999999
Q ss_pred cCCCEEEEEec------CCeEEEEeCCCCceeeeeC
Q 001336 993 CDSQSIYVAFE------EGSVGVLTASTLRLRCRIN 1022 (1097)
Q Consensus 993 ~dg~~l~s~s~------Dg~v~vwd~~~~~~~~~~~ 1022 (1097)
|||++|+++.. |+.++||++. |+++.+..
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 99999998875 7889999984 66665544
No 254
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.37 E-value=3.3e-09 Score=113.57 Aligned_cols=204 Identities=9% Similarity=0.086 Sum_probs=126.5
Q ss_pred EEEEccCCCEEEEEe---CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEccc-ceEE-E-
Q 001336 811 CFALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-DEVK-T- 884 (1097)
Q Consensus 811 ~l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~-~~~~-~- 884 (1097)
.++++|||++|.+.. ++.|.+.|+.+++.+.++.... ...-...++ ...+ +-+.||......+.+ |+.. .
T Consensus 109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e--~~~~-~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN--DTFF-MHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC--CccE-EEeecCceEEEEecCCCceEEee
Confidence 467777777777664 4678888888888777766422 222222222 1122 222344444433322 2211 1
Q ss_pred --EecccccCeE-EEEEec-CCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCC----CCccCCeEEEEcCCCcEEE
Q 001336 885 --KLKGHQKRIT-GLAFSN-TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT----ASALADTRVQFHLDQTHLL 956 (1097)
Q Consensus 885 --~l~~h~~~V~-~l~~s~-dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~l~~s~dg~~l~ 956 (1097)
.+.+-..++. .-.|++ ||+++....+ |+|.+-|+...+......+....... -.......+++++|++.++
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 1111001110 014566 8888877766 99999997665433333333221110 0114455699999999988
Q ss_pred EEe---C--------CeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCC-EEEEEe-cCCeEEEEeCCCCceeeeeC
Q 001336 957 AVH---E--------TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQ-SIYVAF-EEGSVGVLTASTLRLRCRIN 1022 (1097)
Q Consensus 957 ~~~---d--------~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~s-~Dg~v~vwd~~~~~~~~~~~ 1022 (1097)
+.. . +.|.++|..+++.+..+.. ...+..+++|+||+ +|++.+ .++.|.|.|+.+++.+..+.
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 832 1 5799999999999999875 35899999999999 777666 57889999999999988773
No 255
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.36 E-value=1.7e-09 Score=114.19 Aligned_cols=359 Identities=12% Similarity=0.166 Sum_probs=225.3
Q ss_pred EEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEE
Q 001336 497 KAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF 576 (1097)
Q Consensus 497 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 576 (1097)
.+|+..+......+....-++..+++||.|.+|++.... .|.+|+-..+..+..+... .|..+.|+|.+++|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-----~V~~~~g~~~~~l~~~~~~---~V~~~~fSP~~kYL 86 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-----GVECWGGPSKAKLVRFRHP---DVKYLDFSPNEKYL 86 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhcc-----ceEEccccchhheeeeecC---CceecccCccccee
Confidence 355555444444444455578899999999999987543 4999998776644444432 68889999999999
Q ss_pred EEEeCCC---------------cEEEEECCCCceEEEEecCCCCCCcc-eEEEcCCCCEEEEEECCCcEEEEEcCCCceE
Q 001336 577 LAAGDEF---------------MIKFWDMDNVNLLASIDADGGLQASP-CIRFNKEGILLAVSTNDNGIKILANADGIRL 640 (1097)
Q Consensus 577 ~~~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 640 (1097)
.+-+..+ .+.+||..+|..+..+.......... -+.|+-+..++|-.. ...+.|+++... .
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t~n--~ 163 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEITDN--I 163 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEecCCc--c
Confidence 9876443 49999999999999887653322233 678888777666542 346888876221 0
Q ss_pred EEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCccccccccccccccccc
Q 001336 641 LRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLT 720 (1097)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~ 720 (1097)
. .+.....
T Consensus 164 ~----~~p~~~l-------------------------------------------------------------------- 171 (561)
T COG5354 164 E----EHPFKNL-------------------------------------------------------------------- 171 (561)
T ss_pred c----cCchhhc--------------------------------------------------------------------
Confidence 0 0000000
Q ss_pred ccCCCceeeEeccCCCcCccceEEEEEccCCc--eeee-----eccCcEEEEeccCCCCCCccCccccccCCcccCCCCC
Q 001336 721 EITEPSQCRSLRLPDNLTAMRVSRLIYTNSGL--AILA-----LASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSG 793 (1097)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~--~l~~-----~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~ 793 (1097)
....|..+.++|.|. .|+. .+..+.+++|.+..+
T Consensus 172 -----------------r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~---------------------- 212 (561)
T COG5354 172 -----------------RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN---------------------- 212 (561)
T ss_pred -----------------cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC----------------------
Confidence 112344455555431 1121 223456666655421
Q ss_pred cccc-ccCCCCCCCCCeeEEEEccCCCEEEEEe------------CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCC
Q 001336 794 ILMT-NDISDTNPEDAVPCFALSKNDSYVMSAS------------GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDN 860 (1097)
Q Consensus 794 ~~~~-~~~~~~~h~~~v~~l~~s~dg~~la~~s------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~ 860 (1097)
..+. ..+ ..-.-..+.|.+.|++|++-- ...++|+++....+ .....-.++|...+|.| .+
T Consensus 213 s~l~tk~l----fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p-~S 286 (561)
T COG5354 213 SVLVTKNL----FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEP-LS 286 (561)
T ss_pred Ceeeeeee----EeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecc-cC
Confidence 1111 001 112223567777787766421 24588999874443 33335678999999999 55
Q ss_pred CEEEEE--ECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCC---CcEEEEEcCCCcccceeeEeecCC
Q 001336 861 NIIAIG--MEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGAD---SQLCVWSTDGWEKQASKFLTIPNG 935 (1097)
Q Consensus 861 ~~la~g--~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~D---g~i~iwd~~~~~~~~~~~~~~~~~ 935 (1097)
+.+++. -.+..+-++|+... +...+ ....=..+.|||.+++++.++-| |.|-+||..... .+.....+
T Consensus 287 ~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf----~~~~~~~~ 359 (561)
T COG5354 287 SRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF----KVAGAFNG 359 (561)
T ss_pred CceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCce----EEEEEeec
Confidence 555443 47778999998865 33332 33444667899999999998887 579999987732 23322222
Q ss_pred CCCCccCCeEEEEcCCCcEEEEE-------eCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCC
Q 001336 936 RTASALADTRVQFHLDQTHLLAV-------HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEG 1005 (1097)
Q Consensus 936 ~~~~~~~v~~l~~s~dg~~l~~~-------~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg 1005 (1097)
. ....+.|+||+.++.+. .|..|.|||+...... ..+.+.|-|.|++.-+.+.+.
T Consensus 360 ~-----n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f----------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 360 L-----NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF----------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred C-----CceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh----------hhhhccccCCcccceeeccCC
Confidence 2 24667899999998873 3678999999744332 456678888888877776654
No 256
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.35 E-value=3e-10 Score=113.45 Aligned_cols=264 Identities=13% Similarity=0.195 Sum_probs=173.9
Q ss_pred eecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEee---ccccCccccccccCCCCCCeEEEEEccC
Q 001336 316 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWE---LGACSMPLQASLSSDYTASVNRVMWSPD 392 (1097)
Q Consensus 316 ~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~h~~~V~~v~~spd 392 (1097)
+...+-|.+|.|..+|.+ ||+|..+|.|.++.-..... .+++++. ...+...+.. .-.-...|..+.|.++
T Consensus 22 vteadiis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~---~ey~~~t~fqshepEFDYLk--SleieEKinkIrw~~~ 95 (433)
T KOG1354|consen 22 VTEADIISAVEFDHYGER-LATGDKGGRVVLFEREKLYK---GEYNFQTEFQSHEPEFDYLK--SLEIEEKINKIRWLDD 95 (433)
T ss_pred echhcceeeEEeecccce-EeecCCCCeEEEeecccccc---cceeeeeeeeccCcccchhh--hhhhhhhhhhceecCC
Confidence 335567899999999996 59999999999997543221 0111111 1111111111 1123457889999986
Q ss_pred CC--EEEEEECCCEEEEEEccCCeeee--------------------------------eeee-eecccCcEEEEEEecC
Q 001336 393 GT--LFGVAYSKHIVHLYTYHGGDELR--------------------------------NHLE-IEAHVGSVNDLAFSYP 437 (1097)
Q Consensus 393 ~~--~las~~~dg~i~iwd~~~~~~~~--------------------------------~~~~-l~~h~~~V~~l~~s~d 437 (1097)
++ .++..+.|.+|++|.+....... +... -.+|..-|.++.++.|
T Consensus 96 ~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD 175 (433)
T KOG1354|consen 96 GNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD 175 (433)
T ss_pred CCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc
Confidence 54 56777899999999985422100 0011 2367888999999999
Q ss_pred CCcEEEEEEeCCCcEEEEECCCCcee---EEeecC-----CcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCC----
Q 001336 438 NKQLSVVTCGEDRVIKVWDAVTGTKQ---YIFEGH-----ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG---- 505 (1097)
Q Consensus 438 ~~~~~l~s~s~d~~i~iwd~~~~~~~---~~~~~h-----~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---- 505 (1097)
.. .++++ .|=.|.+|+++--... .-++.+ +.-|++..|+|... +.++-.+..|+|++.|++...
T Consensus 176 ~E--t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~ 251 (433)
T KOG1354|consen 176 KE--TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDA 251 (433)
T ss_pred cc--eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcc
Confidence 98 45554 5678999998743222 222333 34578888988765 577777888999999998321
Q ss_pred -cee-ee----------cCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeC-CCCeeeEEecCCCC-----------
Q 001336 506 -SRV-DY----------DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE-SEGAVKRTYHGLGK----------- 561 (1097)
Q Consensus 506 -~~~-~~----------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~-~~~~~~~~~~~~~~----------- 561 (1097)
... .. ..--..|..+.|+++|+++++-. -.+|.+||+ ...+++.+++.|..
T Consensus 252 hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEn 326 (433)
T KOG1354|consen 252 HSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEN 326 (433)
T ss_pred hhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhc
Confidence 111 10 01112678899999999999854 246999999 45567777766532
Q ss_pred cc---eEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001336 562 RS---VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN 594 (1097)
Q Consensus 562 ~~---v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 594 (1097)
.. -..++|+.++.++++|+....+++++...|.
T Consensus 327 D~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 327 DAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred cchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 11 2347899999999999999999999965543
No 257
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.34 E-value=1.6e-08 Score=112.23 Aligned_cols=246 Identities=13% Similarity=0.178 Sum_probs=162.2
Q ss_pred CCCeEEEEEccCCCEEEEEEC----CCEEEEEEccCC-eeeeeeeeeecccCcEEEEEEecCCCcEEEEEEe-CCCcEEE
Q 001336 381 TASVNRVMWSPDGTLFGVAYS----KHIVHLYTYHGG-DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKV 454 (1097)
Q Consensus 381 ~~~V~~v~~spd~~~las~~~----dg~i~iwd~~~~-~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s-~d~~i~i 454 (1097)
......++++|++++|.++.. ++.|..|++... ..+...............++++|+++ +|+++. .+|.|.+
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~--~l~vany~~g~v~v 113 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGR--FLYVANYGGGSVSV 113 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSS--EEEEEETTTTEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCC--EEEEEEccCCeEEE
Confidence 345677999999999999877 579999998864 23443333433445567899999999 555554 6899999
Q ss_pred EECCC-CceeEE---ee----------cCCcCeEEEeecccCCccEEEEEc-CCCeEEEEEcCCCCcee----e-ecCCC
Q 001336 455 WDAVT-GTKQYI---FE----------GHESPVYSICPHHKENIQFIFSTA-TDGKIKAWLYDNLGSRV----D-YDAPG 514 (1097)
Q Consensus 455 wd~~~-~~~~~~---~~----------~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~----~-~~~~~ 514 (1097)
+++.. |..... +. .......++.+ +++|+++++.. ....|.+|+++...... . ....+
T Consensus 114 ~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~--~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G 191 (345)
T PF10282_consen 114 FPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF--SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG 191 (345)
T ss_dssp EEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE---TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred EEccCCcccceeeeecccCCCCCcccccccccceeEEE--CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC
Confidence 99986 443322 21 12344677877 55667776653 34689999998765211 1 22345
Q ss_pred CceEEEEEccCCCEEEEeeeCCCCCceEEEEeCC--CCe--eeEEecCC----CC-cceEEEEEcCCCCEEEEEe-CCCc
Q 001336 515 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNES--EGA--VKRTYHGL----GK-RSVGVVQFDTTKNRFLAAG-DEFM 584 (1097)
Q Consensus 515 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~--~~~~~~~~----~~-~~v~~~~~~~~~~~l~~~~-~dg~ 584 (1097)
...+.+.|+|+++++++... ....|.++++. ++. .+..+... .. .....+.++|+|++|+++. .++.
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s 268 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS 268 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred CCCcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence 57889999999999988764 24568887776 443 23333221 11 1467899999999988877 7788
Q ss_pred EEEEECC--CCce--EEEEecCCCCCCcceEEEcCCCCEEEEEE-CCCcEEEEEcC
Q 001336 585 IKFWDMD--NVNL--LASIDADGGLQASPCIRFNKEGILLAVST-NDNGIKILANA 635 (1097)
Q Consensus 585 i~iwd~~--~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-~dg~i~iw~~~ 635 (1097)
|.+|+++ ++++ +..+... ...-..++++|+|++|+++. .++.|.+|++.
T Consensus 269 I~vf~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 269 ISVFDLDPATGTLTLVQTVPTG--GKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEEECTTTTTEEEEEEEEES--SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEecCCCceEEEEEEeCC--CCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 9999984 3443 3333322 23457999999999999887 46789999774
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=6.7e-10 Score=128.12 Aligned_cols=223 Identities=13% Similarity=0.078 Sum_probs=143.4
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECC---CEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCC--c
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--V 451 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~ 451 (1097)
+..+...+...+|||||+.|+..+.+ ..|.+|++.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 34566789999999999999887644 379999999886432 3333344567899999995 333555555 6
Q ss_pred EEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEc-CCC--eEEEEEcCCCCceeeecCCCCceEEEEEccCCCE
Q 001336 452 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDG--KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGAR 528 (1097)
Q Consensus 452 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 528 (1097)
|++||+.+++.. .+..+........| ++||+.|+..+ .++ .|.++++.+++... +...........|+|+|+.
T Consensus 269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~--spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 269 IYVMDLASRQLS-RVTNHPAIDTEPFW--GKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKT 344 (430)
T ss_pred EEEEECCCCCeE-EcccCCCCcCCeEE--CCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 888899887654 45545555555666 55666665544 344 46666766554332 2222333446789999999
Q ss_pred EEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEEEecCCCC
Q 001336 529 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE---FMIKFWDMDNVNLLASIDADGGL 605 (1097)
Q Consensus 529 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~ 605 (1097)
++...... +...|.++|+.+++........ ......|+|+|+.++..+.+ ..|++++++. .....+..+ .
T Consensus 345 i~~~~~~~-~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~--~ 417 (430)
T PRK00178 345 LVMVHRQD-GNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTA--Q 417 (430)
T ss_pred EEEEEccC-CceEEEEEECCCCCEEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCC--C
Confidence 98876532 3556899999887654332221 12245899999998877643 3577777754 334444432 3
Q ss_pred CCcceEEEcC
Q 001336 606 QASPCIRFNK 615 (1097)
Q Consensus 606 ~~v~~v~~s~ 615 (1097)
..+...+|+|
T Consensus 418 g~~~~p~ws~ 427 (430)
T PRK00178 418 GEVREPSWSP 427 (430)
T ss_pred CCcCCCccCC
Confidence 3456677776
No 259
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.6e-09 Score=114.99 Aligned_cols=328 Identities=10% Similarity=0.166 Sum_probs=197.8
Q ss_pred ceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeC-----------CCc
Q 001336 516 SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD-----------EFM 584 (1097)
Q Consensus 516 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~ 584 (1097)
.-+-+.|||.|.||++-..-| |.+|--.+...++.|... .+.-+.|||+.+||++-+. ...
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-----I~lWGG~~f~r~~RF~Hp---~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-----IALWGGESFDRIQRFYHP---GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-----eeeecCccHHHHHhccCC---CceeeecCCccceEEEecCCccccCcccCCCce
Confidence 346689999999999987543 999987776666666532 6788999999999998652 257
Q ss_pred EEEEECCCCceEEEEecCCCC-CCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCC
Q 001336 585 IKFWDMDNVNLLASIDADGGL-QASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAP 663 (1097)
Q Consensus 585 i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (1097)
++|||+.+|.+...+...... ..-.-..||.|++++|.-..+ .|.||+..+- ..+.+..
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf----~lld~Ks--------------- 343 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSF----MLLDKKS--------------- 343 (698)
T ss_pred EEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCce----eeecccc---------------
Confidence 999999999998888653222 223467899999999887764 7888876432 1111100
Q ss_pred cccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceE
Q 001336 664 AIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVS 743 (1097)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~ 743 (1097)
+ .-..|.
T Consensus 344 --------------------------------------------------l-----------------------ki~gIr 350 (698)
T KOG2314|consen 344 --------------------------------------------------L-----------------------KISGIR 350 (698)
T ss_pred --------------------------------------------------c-----------------------CCcccc
Confidence 0 124466
Q ss_pred EEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEE
Q 001336 744 RLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMS 823 (1097)
Q Consensus 744 ~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~ 823 (1097)
.+.|+|.+..|+.-... +.. -...++-+.+ |.++.|-
T Consensus 351 ~FswsP~~~llAYwtpe-------------------------------~~~----------~parvtL~ev-Ps~~~iR- 387 (698)
T KOG2314|consen 351 DFSWSPTSNLLAYWTPE-------------------------------TNN----------IPARVTLMEV-PSKREIR- 387 (698)
T ss_pred CcccCCCcceEEEEccc-------------------------------ccC----------CcceEEEEec-Cccceee-
Confidence 77788876655432211 100 0111111111 2222221
Q ss_pred EeCCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEE----------ECCCcEEEEEcccceEEEEecccccCe
Q 001336 824 ASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIG----------MEDSSIQIYNVRVDEVKTKLKGHQKRI 893 (1097)
Q Consensus 824 ~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g----------~~dg~v~vwd~~~~~~~~~l~~h~~~V 893 (1097)
+..++++.+. .+.|-. .|.+|+.- +.=-.+.|+.+......-..-.-...|
T Consensus 388 ----t~nlfnVsDc--------------kLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v 448 (698)
T KOG2314|consen 388 ----TKNLFNVSDC--------------KLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV 448 (698)
T ss_pred ----eccceeeecc--------------EEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe
Confidence 1223333222 223332 33333321 112246677766544322222345678
Q ss_pred EEEEEecCCCEEEEEeCC---CcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE----eCCeEEEE
Q 001336 894 TGLAFSNTLNVLVSSGAD---SQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV----HETQIAIY 966 (1097)
Q Consensus 894 ~~l~~s~dg~~l~s~~~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~----~d~~v~vw 966 (1097)
...+|-|.|..+++-+.. .++.+|.+++... ....+..... .....+.|+|.|++++++ ..|.+.+|
T Consensus 449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~-~~~lVk~~dk-----~~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK-KPSLVKELDK-----KFANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred eeeeeccCCCeEEEEEccccccceeEEEeecCCC-chhhhhhhcc-----cccceEEEcCCCcEEEEEEecccccceEEE
Confidence 999999999887765443 5688998885221 1122222222 236789999999999873 57899999
Q ss_pred eCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEec------CCeEEEEeCCC
Q 001336 967 EAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFE------EGSVGVLTAST 1014 (1097)
Q Consensus 967 d~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~------Dg~v~vwd~~~ 1014 (1097)
|.....+...-. ..| -..+.+.|.|.|+|++|++. |.-.++|++..
T Consensus 523 D~~~a~~k~~~~-~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 523 DTDYADLKDTAS-PEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred ecchhhhhhccC-ccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 998533322211 123 35678899999999999885 45566777654
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=7.3e-10 Score=126.86 Aligned_cols=223 Identities=13% Similarity=0.053 Sum_probs=142.3
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECC-C--EEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCc--
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSK-H--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV-- 451 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~d-g--~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~-- 451 (1097)
+..+...+.+.+|||||+.|+..+.+ + .|.+||+.+++.. ....+ .+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~---~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSF---PGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCC---CCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 34466788999999999999887543 2 6889999887642 22222 233457899999995 3445566664
Q ss_pred EEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEc-CCCe--EEEEEcCCCCceeeecCCCCceEEEEEccCCCE
Q 001336 452 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDGK--IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGAR 528 (1097)
Q Consensus 452 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 528 (1097)
|++||+.+++.. .+..+.......+|+ +||+.|+..+ .++. |.++|+.+++.. .+..........+|+|||++
T Consensus 288 Iy~~dl~tg~~~-~lt~~~~~~~~p~wS--pDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 288 IYVVDIATKALT-RITRHRAIDTEPSWH--PDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRS 363 (448)
T ss_pred EEEEECCCCCeE-ECccCCCCccceEEC--CCCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCE
Confidence 888898877653 444455555667774 5566665544 3444 555566554432 22223333455789999999
Q ss_pred EEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEe-CCC--cEEEEECCCCceEEEEecCCCC
Q 001336 529 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEF--MIKFWDMDNVNLLASIDADGGL 605 (1097)
Q Consensus 529 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~ 605 (1097)
++..+.. .+...|.++|+.+++........ ......|+|+|+.|+..+ .++ .+++++. +|+....+..+ .
T Consensus 364 l~~~~~~-~g~~~I~~~dl~~g~~~~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~--~ 436 (448)
T PRK04792 364 MIMVNRT-NGKFNIARQDLETGAMQVLTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAG--Q 436 (448)
T ss_pred EEEEEec-CCceEEEEEECCCCCeEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCC--C
Confidence 9887654 33456888898887653322221 122357999999887766 333 3777787 45666666543 3
Q ss_pred CCcceEEEcC
Q 001336 606 QASPCIRFNK 615 (1097)
Q Consensus 606 ~~v~~v~~s~ 615 (1097)
..+...+|+|
T Consensus 437 g~~~~p~Wsp 446 (448)
T PRK04792 437 GEVKSPAWSP 446 (448)
T ss_pred CCcCCCccCC
Confidence 3566778887
No 261
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.32 E-value=1.1e-10 Score=116.34 Aligned_cols=111 Identities=18% Similarity=0.328 Sum_probs=91.9
Q ss_pred CCCCeeEEEEccCCCEEEEEe---CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECC---CcEEEEEcc
Q 001336 805 PEDAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED---SSIQIYNVR 878 (1097)
Q Consensus 805 h~~~v~~l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~d---g~v~vwd~~ 878 (1097)
..++|.+++|+|+|+.+|+.. +..|.+||++ ++.+..+. ...+..+.|+| +|++|++|+.+ |.|.+||..
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECC
Confidence 356799999999999987653 5789999996 66666664 56788999999 89999998754 679999999
Q ss_pred cceEEEEecccccCeEEEEEecCCCEEEEEeC------CCcEEEEEcCC
Q 001336 879 VDEVKTKLKGHQKRITGLAFSNTLNVLVSSGA------DSQLCVWSTDG 921 (1097)
Q Consensus 879 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~------Dg~i~iwd~~~ 921 (1097)
+.+.+.... |. .++.++|||||++++++.. |..++||++..
T Consensus 134 ~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 134 KKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 988887765 43 3789999999999998874 78899999976
No 262
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.32 E-value=6.6e-10 Score=128.22 Aligned_cols=210 Identities=15% Similarity=0.087 Sum_probs=139.5
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECC---CEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCC--c
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--V 451 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~ 451 (1097)
+..+...+...+|||||++||.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 34566679999999999999988654 479999999876432 3445666778999999985 334555444 6
Q ss_pred EEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcC-CC--eEEEEEcCCCCceeeecCCCCceEEEEEccCCCE
Q 001336 452 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DG--KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGAR 528 (1097)
Q Consensus 452 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 528 (1097)
|++||+.++... .+..+........| .++|+.|+..+. ++ .|.++|+.+.+. ..+...........|+|+|++
T Consensus 260 i~~~d~~~~~~~-~l~~~~~~~~~~~~--s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 260 IYVMDLDGKQLT-RLTNGPGIDTEPSW--SPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEEEECCCCCEE-ECCCCCCCCCCEEE--CCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCE
Confidence 999998877643 34445444445566 456677765543 33 577777765443 333334556778899999999
Q ss_pred EEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceEEEEe
Q 001336 529 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF---MIKFWDMDNVNLLASID 600 (1097)
Q Consensus 529 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~ 600 (1097)
++....+. +...|.+||+.++.... +.... ......|+|+++.|+..+.++ .+++.+.. ++....+.
T Consensus 336 i~~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 336 IAFVHREG-GGFNIAVMDLDGGGERV-LTDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEEccC-CceEEEEEeCCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 99887543 35579999998765432 32221 234468999999988877543 35555543 44445454
No 263
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1.1e-09 Score=124.29 Aligned_cols=228 Identities=13% Similarity=0.080 Sum_probs=141.9
Q ss_pred cCCCCCCeEEEEEccCCCEEE---EEECCC--EEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeC---
Q 001336 377 SSDYTASVNRVMWSPDGTLFG---VAYSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE--- 448 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~la---s~~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~--- 448 (1097)
+......+..-+|||||+.++ +...+| .|.+.++.+|+..+ +....+.....+|||||+. ++++...
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~-Laf~s~~~g~ 254 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKL-LAFISDRYGN 254 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCE-EEEEECCCCC
Confidence 333455667889999998532 344443 57888888876432 3334445567899999995 2333332
Q ss_pred -CCcEEEEECCCC---ceeEEeecCCcCeEEEeecccCCccEEEEEc-CCCeEEEEEc--CC-CCceeeecCCCCceEEE
Q 001336 449 -DRVIKVWDAVTG---TKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDGKIKAWLY--DN-LGSRVDYDAPGHSSTMM 520 (1097)
Q Consensus 449 -d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~--~~-~~~~~~~~~~~~~v~~~ 520 (1097)
|-.+.+|++.++ +......++.+.....+| ++||+.|+..+ .+|...+|.+ +. ......+......+...
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w--SPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p 332 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF--SPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP 332 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEE--CCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence 223455777653 333333333333455666 56777666554 5676666654 32 22233344444566788
Q ss_pred EEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceEE
Q 001336 521 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD---EFMIKFWDMDNVNLLA 597 (1097)
Q Consensus 521 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~ 597 (1097)
.|+|||+.|+..+.. .+...|.+||+.+++....... . ..+....|+|+|+.|+.... ...|++||+.+++...
T Consensus 333 ~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~-~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 333 AWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P-ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred eECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 999999999987654 2456799999998876544333 2 24567899999998876542 3578999998877655
Q ss_pred EEecCCCCCCcceEEEcCCC
Q 001336 598 SIDADGGLQASPCIRFNKEG 617 (1097)
Q Consensus 598 ~~~~~~~~~~v~~v~~s~~~ 617 (1097)
.... ...+...+|+|-.
T Consensus 410 Lt~~---~g~~~~p~Ws~~~ 426 (428)
T PRK01029 410 IVIG---SGEKRFPSWGAFP 426 (428)
T ss_pred eecC---CCcccCceecCCC
Confidence 4432 2345678888743
No 264
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=1.8e-10 Score=117.36 Aligned_cols=245 Identities=9% Similarity=0.119 Sum_probs=180.1
Q ss_pred CCCCeEEEEEccCCC--EEEEEECCCEEEEEEccCCeeeeee---eeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001336 380 YTASVNRVMWSPDGT--LFGVAYSKHIVHLYTYHGGDELRNH---LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 454 (1097)
Q Consensus 380 h~~~V~~v~~spd~~--~las~~~dg~i~iwd~~~~~~~~~~---~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~i 454 (1097)
....|..++|.-|++ .+..++.|..+....+......... .....-.++|..++.. |+ .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 456788888887654 4555557777777777665533321 1233455667777665 44 5899999999999
Q ss_pred EECCCCc----eeEEeecCCcCeEEEeecccCCccEEEEEcCC--CeEEEEEcCCCCceeeecCCC---------CceEE
Q 001336 455 WDAVTGT----KQYIFEGHESPVYSICPHHKENIQFIFSTATD--GKIKAWLYDNLGSRVDYDAPG---------HSSTM 519 (1097)
Q Consensus 455 wd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~---------~~v~~ 519 (1097)
|..+.+. .+..+..+ ..+..+.-++.. -.++++|+.. ..+.+||++...+.+.-.... -++++
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~-p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTD-PYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCCC-CceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 9988443 33334333 345555433222 2577779988 889999999875544422211 15778
Q ss_pred EEEccC--CCEEEEeeeCCCCCceEEEEeCCCC-eeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE
Q 001336 520 MAYSAD--GARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL 596 (1097)
Q Consensus 520 ~~~s~~--~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 596 (1097)
+.|-+. ...+++++. -.++++||.+.+ +++..+..... ++.++...|.++++++|..-|.+..||.+.++..
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E~-~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLEN-PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEeccccC-cceeeeecCCCcEEEEecccchhheecccCceee
Confidence 899887 788888864 457999999876 56777776665 8999999999999999999999999999999888
Q ss_pred EE-EecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 597 AS-IDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 597 ~~-~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
.. +.+- .+.|.++..+|.++++++++-|+.+||+|+.+.
T Consensus 283 g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 283 GCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 77 5543 678999999999999999999999999999885
No 265
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=7.5e-10 Score=127.69 Aligned_cols=225 Identities=11% Similarity=0.087 Sum_probs=142.4
Q ss_pred EEeecCCCeeEEEEccCCCeEEEEEeCC--CeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc
Q 001336 314 MTLNQGSAVKSMDFHPVQQILLVVGTNM--GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 391 (1097)
Q Consensus 314 ~~~~h~~~V~~v~fspdg~~lla~gs~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 391 (1097)
....+...+...+|||||++|+.+...+ ..|.+||+.+++... +....+.+...+|||
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~~~Sp 252 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAPAWSP 252 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCeEECC
Confidence 3345778899999999999886665444 368899998886533 222233455789999
Q ss_pred CCCEEEE-EECCC--EEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCC--cEEEEECCCCceeEEe
Q 001336 392 DGTLFGV-AYSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIF 466 (1097)
Q Consensus 392 d~~~las-~~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~ 466 (1097)
||+.|+. ...+| .|.+||+.+++... +..+........|+|||+. ++++...++ .|+++|+.+++.....
T Consensus 253 DG~~la~~~~~~g~~~Iy~~d~~~~~~~~----lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 253 DGSKLAFVLSKDGNPEIYVMDLASRQLSR----VTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGRAERVT 327 (430)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCeEE----cccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCCEEEee
Confidence 9998875 44454 68888998876332 4456666777899999995 233333333 6888888887754322
Q ss_pred ecCCcCeEEEeecccCCccEEEEEcC-CC--eEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEE
Q 001336 467 EGHESPVYSICPHHKENIQFIFSTAT-DG--KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 543 (1097)
Q Consensus 467 ~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 543 (1097)
. .........| +++|+.|+..+. ++ .|.+||+.++..... .. ........|+|||+.++..+..+ +...|.
T Consensus 328 ~-~~~~~~~~~~--Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l-t~-~~~~~~p~~spdg~~i~~~~~~~-g~~~l~ 401 (430)
T PRK00178 328 F-VGNYNARPRL--SADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL-TD-TSLDESPSVAPNGTMLIYATRQQ-GRGVLM 401 (430)
T ss_pred c-CCCCccceEE--CCCCCEEEEEEccCCceEEEEEECCCCCEEEc-cC-CCCCCCceECCCCCEEEEEEecC-CceEEE
Confidence 1 1122233456 456677766654 33 577888877654332 22 22233568999999998887543 355688
Q ss_pred EEeCCCCeeeEEecCCCCcceEEEEEcC
Q 001336 544 EWNESEGAVKRTYHGLGKRSVGVVQFDT 571 (1097)
Q Consensus 544 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 571 (1097)
+++...+ ..+.+..... .+...+|+|
T Consensus 402 ~~~~~g~-~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 402 LVSINGR-VRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEECCCC-ceEECcCCCC-CcCCCccCC
Confidence 8887543 3334443322 455556665
No 266
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=9.7e-10 Score=124.70 Aligned_cols=226 Identities=11% Similarity=0.079 Sum_probs=140.5
Q ss_pred cCCCeeEEEEccCCCeE--EEEEeCCC--eEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCC
Q 001336 318 QGSAVKSMDFHPVQQIL--LVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 393 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~l--la~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~ 393 (1097)
....+..-+|||||+.+ +++...+| .|.+.++.+++... +....+.....+|||||
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTFSPRK 242 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEECCCC
Confidence 45567788999999863 33544444 57777888776433 22233445568999999
Q ss_pred CEEEEEEC-----CCEEEEEEccCCe--eeeeeeeeecccCcEEEEEEecCCCcEEEEEE-eCCCcEEEE--ECCC-Cce
Q 001336 394 TLFGVAYS-----KHIVHLYTYHGGD--ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTC-GEDRVIKVW--DAVT-GTK 462 (1097)
Q Consensus 394 ~~las~~~-----dg~i~iwd~~~~~--~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~-s~d~~i~iw--d~~~-~~~ 462 (1097)
+.||..+. +..+.+|++.++. .... ...++.......+|+|||+. |+.. ..++...+| ++.. +..
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~--Laf~s~~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTR--LVFVSNKDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCE--EEEEECCCCCceEEEEECcccccc
Confidence 99987653 2234557776531 1221 12223344567899999994 4444 356654555 4432 333
Q ss_pred eEEeecCCcCeEEEeecccCCccEEEEEcCC---CeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCC
Q 001336 463 QYIFEGHESPVYSICPHHKENIQFIFSTATD---GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE 539 (1097)
Q Consensus 463 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 539 (1097)
...+..+...+....| ++||+.|+..+.+ ..|.+||+.+++..... .....+....|+|||+.|+..... .+.
T Consensus 319 ~~~lt~~~~~~~~p~w--SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~-~g~ 394 (428)
T PRK01029 319 PRLLTKKYRNSSCPAW--SPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGN-SNE 394 (428)
T ss_pred eEEeccCCCCccceeE--CCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECC-CCC
Confidence 4445555556667777 5566777765433 46899999876654332 223456789999999998876543 345
Q ss_pred ceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCC
Q 001336 540 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK 573 (1097)
Q Consensus 540 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 573 (1097)
..|.++|+..++......+. ..+...+|+|..
T Consensus 395 ~~L~~vdl~~g~~~~Lt~~~--g~~~~p~Ws~~~ 426 (428)
T PRK01029 395 SELYLISLITKKTRKIVIGS--GEKRFPSWGAFP 426 (428)
T ss_pred ceEEEEECCCCCEEEeecCC--CcccCceecCCC
Confidence 67999999887665544332 245566777643
No 267
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=8.1e-10 Score=126.48 Aligned_cols=223 Identities=12% Similarity=0.104 Sum_probs=139.0
Q ss_pred eecCCCeeEEEEccCCCeEEEEEeCCC--eEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCC
Q 001336 316 LNQGSAVKSMDFHPVQQILLVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 393 (1097)
Q Consensus 316 ~~h~~~V~~v~fspdg~~lla~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~ 393 (1097)
..+...+.+..|||||++|+.+...++ .|.+||+.+++... +....+.....+|||||
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~~g~~~~~~wSPDG 273 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSFPGINGAPRFSPDG 273 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCCCCCcCCeeECCCC
Confidence 346778899999999998866655444 58888988876432 11112233468999999
Q ss_pred CEEEE-EECCCE--EEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCC--cEEEEECCCCceeEEeec
Q 001336 394 TLFGV-AYSKHI--VHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIFEG 468 (1097)
Q Consensus 394 ~~las-~~~dg~--i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~ 468 (1097)
+.|+. .+.+|. |.+||+.+++. . .+..+.......+|+|||+. ++++...++ .|.++|+.+++.... ..
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~-~---~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~ 347 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKAL-T---RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSRL-TF 347 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCe-E---ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEEE-ec
Confidence 98876 455664 77788887763 2 24455566778899999994 233443344 577778877765432 21
Q ss_pred CCcCeEEEeecccCCccEEEEEcC-CCe--EEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEE
Q 001336 469 HESPVYSICPHHKENIQFIFSTAT-DGK--IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 545 (1097)
Q Consensus 469 h~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 545 (1097)
........+| ++||++|+..+. ++. |.++|++++.... +.. ........|+|+|+.|+.....+ +...+.++
T Consensus 348 ~g~~~~~~~~--SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~-~~~d~~ps~spdG~~I~~~~~~~-g~~~l~~~ 422 (448)
T PRK04792 348 EGEQNLGGSI--TPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTS-TRLDESPSVAPNGTMVIYSTTYQ-GKQVLAAV 422 (448)
T ss_pred CCCCCcCeeE--CCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccC-CCCCCCceECCCCCEEEEEEecC-CceEEEEE
Confidence 2222334566 556667766544 444 4445666554332 221 12233458999999998877543 45568888
Q ss_pred eCCCCeeeEEecCCCCcceEEEEEcC
Q 001336 546 NESEGAVKRTYHGLGKRSVGVVQFDT 571 (1097)
Q Consensus 546 d~~~~~~~~~~~~~~~~~v~~~~~~~ 571 (1097)
+. ++...+.+..+.. .+...+|+|
T Consensus 423 ~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 423 SI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EC-CCCceEECcCCCC-CcCCCccCC
Confidence 87 4555565655433 556667766
No 268
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.26 E-value=1e-09 Score=126.71 Aligned_cols=210 Identities=16% Similarity=0.166 Sum_probs=138.7
Q ss_pred EeecCCCeeEEEEccCCCeEEEEEeCC--CeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccC
Q 001336 315 TLNQGSAVKSMDFHPVQQILLVVGTNM--GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 392 (1097)
Q Consensus 315 ~~~h~~~V~~v~fspdg~~lla~gs~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 392 (1097)
.+.+...+...+|||||++|+.+...+ ..|.+||+.+++... +..+...+.+++|+||
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~~~~spD 244 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGAPAFSPD 244 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEECCC
Confidence 334666799999999999876554433 579999998876432 2234456777999999
Q ss_pred CCEEEEE-ECCC--EEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeC-CC--cEEEEECCCCceeEEe
Q 001336 393 GTLFGVA-YSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DR--VIKVWDAVTGTKQYIF 466 (1097)
Q Consensus 393 ~~~las~-~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~-d~--~i~iwd~~~~~~~~~~ 466 (1097)
|+.|+.. +.++ .|++|++.+++... +..+........|+|||+ .|+..+. ++ .|.++|+.+++.. .+
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~s~dg~--~l~~~s~~~g~~~iy~~d~~~~~~~-~l 317 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGKQLTR----LTNGPGIDTEPSWSPDGK--SIAFTSDRGGSPQIYMMDADGGEVR-RL 317 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCCCEEE----CCCCCCCCCCEEECCCCC--EEEEEECCCCCceEEEEECCCCCEE-Ee
Confidence 9988754 4444 58889988775322 444555566789999999 4554443 33 6888898777643 34
Q ss_pred ecCCcCeEEEeecccCCccEEEEEcCCC---eEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEE
Q 001336 467 EGHESPVYSICPHHKENIQFIFSTATDG---KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 543 (1097)
Q Consensus 467 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 543 (1097)
..+...+....| +++|.+++.++.++ .|.+||+.+..... +.. ........|+|+|+.|+....++ +...+.
T Consensus 318 ~~~~~~~~~~~~--spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~p~~spdg~~l~~~~~~~-~~~~l~ 392 (417)
T TIGR02800 318 TFRGGYNASPSW--SPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTD-TGLDESPSFAPNGRMILYATTRG-GRGVLG 392 (417)
T ss_pred ecCCCCccCeEE--CCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccC-CCCCCCceECCCCCEEEEEEeCC-CcEEEE
Confidence 444555666777 55667888777765 78888887644332 222 22345568999999999887653 344566
Q ss_pred EEeCCCCeeeEEec
Q 001336 544 EWNESEGAVKRTYH 557 (1097)
Q Consensus 544 ~wd~~~~~~~~~~~ 557 (1097)
+.+.. +.....+.
T Consensus 393 ~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 393 LVSTD-GRFRARLP 405 (417)
T ss_pred EEECC-CceeeECC
Confidence 66644 44444443
No 269
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=5.9e-10 Score=120.23 Aligned_cols=193 Identities=15% Similarity=0.173 Sum_probs=154.9
Q ss_pred cCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEe------c------------CCCcEEEEEEeCCCcE
Q 001336 391 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS------Y------------PNKQLSVVTCGEDRVI 452 (1097)
Q Consensus 391 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s------~------------d~~~~~l~s~s~d~~i 452 (1097)
|-..|+|....||.++||+...++....+.....-.+..++..|. | .+...+++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 456789999999999999999987544333333334555566652 1 1223378899999999
Q ss_pred EEEECCCCceeEEee--cCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEE
Q 001336 453 KVWDAVTGTKQYIFE--GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF 530 (1097)
Q Consensus 453 ~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 530 (1097)
.++++..|+....+. .|.++|+++.++ .+-..|.+++.|+.+..|+................+.+++++|||+.++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~--~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDA--QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecc--cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 999999999888775 699999999774 3446899999999999999998888888888888999999999999999
Q ss_pred EeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCC-----CCEEEEEe-CCCcEEEEECCC
Q 001336 531 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT-----KNRFLAAG-DEFMIKFWDMDN 592 (1097)
Q Consensus 531 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~-~dg~i~iwd~~~ 592 (1097)
+++. +|.+||+++++.+.+|.||.. +|+++.|... |.+++++. .+..+.+|-.+.
T Consensus 161 ~as~------~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TASR------QIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eccc------eEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9864 699999999999999999997 9999998776 67777655 566677886554
No 270
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.23 E-value=2.3e-09 Score=115.79 Aligned_cols=189 Identities=16% Similarity=0.308 Sum_probs=147.4
Q ss_pred EEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEE--------------------ccCC
Q 001336 334 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW--------------------SPDG 393 (1097)
Q Consensus 334 lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~--------------------spd~ 393 (1097)
++|....||.++|||...++...... +. ..-++.-++..| +-|-
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~-----------p~-----~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t 70 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFA-----------PI-----ASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDT 70 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeec-----------cc-----hhccCcceeEEEEEEeccchHHHHhHHHHhhccCCc
Confidence 56889999999999999887654211 00 011222233333 2244
Q ss_pred CEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCe
Q 001336 394 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV 473 (1097)
Q Consensus 394 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v 473 (1097)
..++-|...|.|.+|++..|+. .....-..|.+.|.++.++.+-. .|.|++.|+.+..|+...++.++.++.....+
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~i-t~~~st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~ 147 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEI-TAKLSTDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKEQKPLV 147 (541)
T ss_pred eEEEeecCCccEEEEEecCCeE-EEEEecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeeccCCCcc
Confidence 5778899999999999999884 43334468999999999998888 89999999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccC-----CCEEEEeeeCCCCCceEEEEeCC
Q 001336 474 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD-----GARLFSCGTNKEGESYLVEWNES 548 (1097)
Q Consensus 474 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~~~~~~~~i~~wd~~ 548 (1097)
.++++ .+||..+++++ +.|++||+++.+....+.+|.++|++++|..+ |.++++... .+..+.+|-..
T Consensus 148 ~sl~i--s~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~---~~r~i~~w~v~ 220 (541)
T KOG4547|consen 148 SSLCI--SPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA---AERGITVWVVE 220 (541)
T ss_pred ceEEE--cCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc---cccceeEEEEE
Confidence 99998 55578899888 79999999999999999999999999999877 778777642 23345666543
No 271
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=7.3e-08 Score=98.62 Aligned_cols=290 Identities=15% Similarity=0.181 Sum_probs=185.8
Q ss_pred CCcceeecCCCC--ceEEEEeecCCCeeEEEEccCCCeEEEEEeC--CCeEEEEEcCC--CceeeeeeeeEeeccccCcc
Q 001336 298 LGQSSYSTDDLP--KTVVMTLNQGSAVKSMDFHPVQQILLVVGTN--MGDVMLWEVGS--RERIAVKSFKVWELGACSMP 371 (1097)
Q Consensus 298 ~~~~~~~~~~~~--~~~~~~~~h~~~V~~v~fspdg~~lla~gs~--dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~ 371 (1097)
+.+.+|..+... ......+.+.+.++-++|+|++++|.++... +|.|.-|.++. |++.....
T Consensus 16 ~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~------------ 83 (346)
T COG2706 16 QGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR------------ 83 (346)
T ss_pred CceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec------------
Confidence 346666666433 2344455588999999999999988766655 68898888875 55433111
Q ss_pred ccccccCCCCCCeEEEEEccCCCEEEEEEC-CCEEEEEEccCCeeeeeeeeeecccCc----------EEEEEEecCCCc
Q 001336 372 LQASLSSDYTASVNRVMWSPDGTLFGVAYS-KHIVHLYTYHGGDELRNHLEIEAHVGS----------VNDLAFSYPNKQ 440 (1097)
Q Consensus 372 ~~~~~~~~h~~~V~~v~~spd~~~las~~~-dg~i~iwd~~~~~~~~~~~~l~~h~~~----------V~~l~~s~d~~~ 440 (1097)
....++ +-+.++++++|++|+++.. -|.|.++-+.....+.....+..|.+. +.+..|.|+++
T Consensus 84 ---~~~~g~--~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~- 157 (346)
T COG2706 84 ---QTLPGS--PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR- 157 (346)
T ss_pred ---cccCCC--CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC-
Confidence 112232 3389999999999999865 578999999663334333334456666 89999999999
Q ss_pred EEEEEEeC-CCcEEEEECCCCceeE----EeecCCcCeEEEeecccCCccEEEEE-cCCCeEEEEEcCCCCcee-eecC-
Q 001336 441 LSVVTCGE-DRVIKVWDAVTGTKQY----IFEGHESPVYSICPHHKENIQFIFST-ATDGKIKAWLYDNLGSRV-DYDA- 512 (1097)
Q Consensus 441 ~~l~s~s~-d~~i~iwd~~~~~~~~----~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~-~~~~- 512 (1097)
+|++.+- --.|.+|++..|+... .+ .....-..|.|++ ++++.... -.+++|.+|.++...... .++.
T Consensus 158 -~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHp--n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i 233 (346)
T COG2706 158 -YLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHP--NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI 233 (346)
T ss_pred -EEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcC--CCcEEEEEeccCCEEEEEEEcCCCceEEEeeee
Confidence 5665543 3369999999876543 22 2344556788865 44666544 468999999988742222 1111
Q ss_pred --------CCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCC--CCeee--EEecCCCCcceEEEEEcCCCCEEEEEe
Q 001336 513 --------PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES--EGAVK--RTYHGLGKRSVGVVQFDTTKNRFLAAG 580 (1097)
Q Consensus 513 --------~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~ 580 (1097)
...+...+.+++||++|.++-. +...|.++.+. ++++. .....+.. .-+...|++.+++|+++.
T Consensus 234 ~tlP~dF~g~~~~aaIhis~dGrFLYasNR---g~dsI~~f~V~~~~g~L~~~~~~~teg~-~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 234 DTLPEDFTGTNWAAAIHISPDGRFLYASNR---GHDSIAVFSVDPDGGKLELVGITPTEGQ-FPRDFNINPSGRFLIAAN 309 (346)
T ss_pred ccCccccCCCCceeEEEECCCCCEEEEecC---CCCeEEEEEEcCCCCEEEEEEEeccCCc-CCccceeCCCCCEEEEEc
Confidence 1236778999999999998753 23367777654 34322 22222222 456788999999999998
Q ss_pred -CCCcEEEEECC--CCceEEEEecCCCCCCcceEEEc
Q 001336 581 -DEFMIKFWDMD--NVNLLASIDADGGLQASPCIRFN 614 (1097)
Q Consensus 581 -~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s 614 (1097)
.+..|.+|..+ +|++-..... .......|+.|.
T Consensus 310 q~sd~i~vf~~d~~TG~L~~~~~~-~~~p~Pvcv~f~ 345 (346)
T COG2706 310 QKSDNITVFERDKETGRLTLLGRY-AVVPEPVCVKFL 345 (346)
T ss_pred cCCCcEEEEEEcCCCceEEecccc-cCCCCcEEEEEc
Confidence 44568888665 4554333221 112234466654
No 272
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.22 E-value=1.9e-09 Score=105.77 Aligned_cols=251 Identities=17% Similarity=0.078 Sum_probs=166.3
Q ss_pred cCCCeeEEEEcc---CCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCC---CCeEEEEEcc
Q 001336 318 QGSAVKSMDFHP---VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT---ASVNRVMWSP 391 (1097)
Q Consensus 318 h~~~V~~v~fsp---dg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~V~~v~~sp 391 (1097)
..+.+..+.|.- +|...++-...+|.|.++.......... ++ + +..-. ....++.|++
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~---------~-----ls~~ki~~~~~lslD~~~ 131 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LR---------G-----LSSKKISVVEALSLDIST 131 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ec---------c-----cchhhhhheeeeEEEeec
Confidence 445666666652 4444566677788888887664432221 00 0 11111 1346788999
Q ss_pred CCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECC-CCceeEE-eecC
Q 001336 392 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV-TGTKQYI-FEGH 469 (1097)
Q Consensus 392 d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~-~~~~~~~-~~~h 469 (1097)
.+..++++-.+|.+.+-+..... +.....+++|.-..+...|+....+ ++.+|+.|+.+..||++ .++.+.. .+-|
T Consensus 132 ~~~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH 209 (339)
T KOG0280|consen 132 SGTKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVH 209 (339)
T ss_pred cCceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceee
Confidence 99999999999999855554433 4444568899999999999987776 89999999999999998 4455543 5668
Q ss_pred CcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCC--EEEEeeeCCCCCceEEEEeC
Q 001336 470 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGA--RLFSCGTNKEGESYLVEWNE 547 (1097)
Q Consensus 470 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~i~~wd~ 547 (1097)
...|.+|.-++ +.+.+|++|+.|-.|++||.++......-..-.+.|..+..+|.-. .|+++-.+| .++-+.
T Consensus 210 ~~GV~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~ 283 (339)
T KOG0280|consen 210 TSGVVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDS 283 (339)
T ss_pred ecceEEEecCC-CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEe
Confidence 89999987544 4568999999999999999998777766666667899999998543 333333222 444444
Q ss_pred CCC--e---eeEEecCCCCcceEEEEEcCCCCEEEEEe-CCCcEE-EEECCCC
Q 001336 548 SEG--A---VKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIK-FWDMDNV 593 (1097)
Q Consensus 548 ~~~--~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~-iwd~~~~ 593 (1097)
+.+ + .......|.. -+..-.|......|++++ .|+.++ +|-.-++
T Consensus 284 ~~~~~e~~~~~~s~~~hdS-l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 284 SDKVLEFQIVLPSDKIHDS-LCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cccccchheeeeccccccc-eeeccccccccceeeeeeccccceeeeeeeccC
Confidence 433 2 2233344433 233333433335688877 777754 7755444
No 273
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.21 E-value=6.6e-08 Score=103.68 Aligned_cols=267 Identities=12% Similarity=0.076 Sum_probs=165.9
Q ss_pred ceEEEEeecCCCeeEEEEccCCCeEEEEEe---------CCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCC
Q 001336 310 KTVVMTLNQGSAVKSMDFHPVQQILLVVGT---------NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDY 380 (1097)
Q Consensus 310 ~~~~~~~~h~~~V~~v~fspdg~~lla~gs---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 380 (1097)
.+.+.++.-......+ +||||+.|+++.+ .+..|.|||..+.+.+....+ +..+.. + .
T Consensus 37 ~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~-------p~~p~~---~--~ 103 (352)
T TIGR02658 37 GRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIEL-------PEGPRF---L--V 103 (352)
T ss_pred CEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEcc-------CCCchh---h--c
Confidence 6666777744444555 9999999988888 789999999999988764221 000000 0 1
Q ss_pred CCCeEEEEEccCCCEEEEEE-C-CCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECC
Q 001336 381 TASVNRVMWSPDGTLFGVAY-S-KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 458 (1097)
Q Consensus 381 ~~~V~~v~~spd~~~las~~-~-dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~ 458 (1097)
......+++||||++|++.. . +..|.+.|+.+++.+..... .+...-...++++. ..-+.||......+.
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v----p~~~~vy~t~e~~~----~~~~~Dg~~~~v~~d 175 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV----PDCYHIFPTANDTF----FMHCRDGSLAKVGYG 175 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC----CCCcEEEEecCCcc----EEEeecCceEEEEec
Confidence 22345789999999999876 3 68999999999987764322 11222222222221 122233433332222
Q ss_pred -CCcee-E---EeecCCcCeEEE-eecccCCccEEEEEcCCCeEEEEEcCCCCcee----e-ecC-------CCCceEEE
Q 001336 459 -TGTKQ-Y---IFEGHESPVYSI-CPHHKENIQFIFSTATDGKIKAWLYDNLGSRV----D-YDA-------PGHSSTMM 520 (1097)
Q Consensus 459 -~~~~~-~---~~~~h~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~-~~~-------~~~~v~~~ 520 (1097)
+|+.. . .+.+-..++..- .|. ..+|.++..... |+|.+.|+....... . +.. ......-+
T Consensus 176 ~~g~~~~~~~~vf~~~~~~v~~rP~~~-~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 176 TKGNPKIKPTEVFHPEDEYLINHPAYS-NKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred CCCceEEeeeeeecCCccccccCCceE-cCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 22211 0 111101111100 121 225566666666 999999965432211 1 111 12234459
Q ss_pred EEccCCCEEEEeeeC------CCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCC-EEEEEe-CCCcEEEEECCC
Q 001336 521 AYSADGARLFSCGTN------KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAG-DEFMIKFWDMDN 592 (1097)
Q Consensus 521 ~~s~~~~~l~~~~~~------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~ 592 (1097)
+++++++++++.... +++...|.++|..+++.+..+.... .+..++++||++ .|++.. .++.|.++|..+
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH--EIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 999999988874311 1233579999999999999887543 688999999999 888776 688899999999
Q ss_pred CceEEEEec
Q 001336 593 VNLLASIDA 601 (1097)
Q Consensus 593 ~~~~~~~~~ 601 (1097)
++.+..+..
T Consensus 332 ~k~i~~i~~ 340 (352)
T TIGR02658 332 GKELSSVNQ 340 (352)
T ss_pred CeEEeeecc
Confidence 999998843
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.21 E-value=7.2e-10 Score=111.02 Aligned_cols=203 Identities=16% Similarity=0.243 Sum_probs=133.1
Q ss_pred eeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECC-CCceeEEee-cCCcCeEEEeecccCCccEEEEEcCCCeEEE
Q 001336 421 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV-TGTKQYIFE-GHESPVYSICPHHKENIQFIFSTATDGKIKA 498 (1097)
Q Consensus 421 ~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 498 (1097)
.++||.+.|++...-|... -+++.+.|.+++||--. .++.-..+. ....++.++.+ ..+...|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y--~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEY--VSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeee--eccceEEEEEEecceEEE
Confidence 4789999999888888777 58999999999999533 333322222 12345666766 445578999999999988
Q ss_pred EEcC----CCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCC
Q 001336 499 WLYD----NLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN 574 (1097)
Q Consensus 499 wd~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 574 (1097)
+.+. ..........|...+..+.|+.....+++.+.|+. +.---.+.+..+..+.-.. ......+.- .
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~----~~~hc~e~~~~lg~Y~~~~--~~t~~~~d~--~ 166 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQ----FAWHCTESGNRLGGYNFET--PASALQFDA--L 166 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccc----eEEEeeccCCcccceEeec--cCCCCceee--E
Confidence 8543 33334445566778999999999999999887542 2222223332222111100 000011111 1
Q ss_pred EEEEEeCCCcEEEEECC--CCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 575 RFLAAGDEFMIKFWDMD--NVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 575 ~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
+.+.|...|.|.+-.+. .-.++.++.+| ...+.+++|.+....+++|..|..+.+||+.-.
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~ 229 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR 229 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEeccCC
Confidence 44555566666665543 34566666654 789999999999999999999999999998655
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.09 E-value=8.7e-08 Score=108.59 Aligned_cols=304 Identities=12% Similarity=0.045 Sum_probs=180.8
Q ss_pred cEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcce
Q 001336 485 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV 564 (1097)
Q Consensus 485 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 564 (1097)
..++.++.++.|..+|..+++................. ++..+++++. ++.+..+|..+|+.+....... .+
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~----~g~l~ald~~tG~~~W~~~~~~--~~ 137 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTE----KGEVIALDAEDGKELWRAKLSS--EV 137 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcC----CCEEEEEECCCCcEeeeeccCc--ee
Confidence 57888888899999999888887776655432222222 4566666654 3469999999998877655432 22
Q ss_pred EE-EEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCC---cceEEEcCCCCEEEEEECCCcEEEEEcCCCceE
Q 001336 565 GV-VQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQA---SPCIRFNKEGILLAVSTNDNGIKILANADGIRL 640 (1097)
Q Consensus 565 ~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 640 (1097)
.+ ... .+..++.++.+|.|+.||.++|+.+........... ....... +..++.+..++.+..+|..+|...
T Consensus 138 ~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 138 LSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred ecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe
Confidence 21 122 245777888899999999999998877654321100 0111121 346778888899999999888322
Q ss_pred EEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCccccccccccccccccc
Q 001336 641 LRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLT 720 (1097)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~ 720 (1097)
. ........ + .. ...++.+.
T Consensus 214 W-~~~~~~~~---------------------------------------------------g------~~-~~~~~~~~- 233 (377)
T TIGR03300 214 W-EQRVALPK---------------------------------------------------G------RT-ELERLVDV- 233 (377)
T ss_pred e-eeccccCC---------------------------------------------------C------CC-chhhhhcc-
Confidence 2 11100000 0 00 00000000
Q ss_pred ccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccC
Q 001336 721 EITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDI 800 (1097)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 800 (1097)
... ..+ .+..+++++.+|.+..||..+++ .+|....+
T Consensus 234 -----------------~~~----p~~--~~~~vy~~~~~g~l~a~d~~tG~-------------~~W~~~~~------- 270 (377)
T TIGR03300 234 -----------------DGD----PVV--DGGQVYAVSYQGRVAALDLRSGR-------------VLWKRDAS------- 270 (377)
T ss_pred -----------------CCc----cEE--ECCEEEEEEcCCEEEEEECCCCc-------------EEEeeccC-------
Confidence 000 011 13456667778888888765321 23432210
Q ss_pred CCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCC-CCeEEEEEeCCCCCEEEEEECCCcEEEEEcc
Q 001336 801 SDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIGMEDSSIQIYNVR 878 (1097)
Q Consensus 801 ~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~ 878 (1097)
. . ...+ .++..+++++ +|.+..+|..+++.+....... ......... +..|++++.+|.|+++|..
T Consensus 271 -~--~----~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~---g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 271 -S--Y----QGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV---GGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred -C--c----cCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE---CCEEEEEeCCCEEEEEECC
Confidence 0 1 1112 2345555555 8999999999998876653222 222333332 3588889999999999999
Q ss_pred cceEEEEecccccCeEE-EEEecCCCEEEEEeCCCcEEEE
Q 001336 879 VDEVKTKLKGHQKRITG-LAFSNTLNVLVSSGADSQLCVW 917 (1097)
Q Consensus 879 ~~~~~~~l~~h~~~V~~-l~~s~dg~~l~s~~~Dg~i~iw 917 (1097)
+|+.+.+++.+...+.. ..+. + ..|+.++.||.|..|
T Consensus 339 tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 339 DGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 99999888876654433 2333 3 358888999988765
No 276
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.03 E-value=2.6e-08 Score=98.03 Aligned_cols=198 Identities=12% Similarity=0.067 Sum_probs=136.4
Q ss_pred eeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeE--EeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcc-cceEEE
Q 001336 809 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMT--TFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVR-VDEVKT 884 (1097)
Q Consensus 809 v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~-~~~~~~ 884 (1097)
..++.|++.+..++++. +|.+.+-+........ .+++|.-++....|+..+.+++.+|+.|+.+..||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45778889898888886 7888866655554444 7889999999999998788899999999999999998 445554
Q ss_pred E-ecccccCeEEEEEec-CCCEEEEEeCCCcEEEEEcCC-CcccceeeEeecCCCCCCccCCeEEEEcCCCc--EEEEEe
Q 001336 885 K-LKGHQKRITGLAFSN-TLNVLVSSGADSQLCVWSTDG-WEKQASKFLTIPNGRTASALADTRVQFHLDQT--HLLAVH 959 (1097)
Q Consensus 885 ~-l~~h~~~V~~l~~s~-dg~~l~s~~~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~--~l~~~~ 959 (1097)
. .+.|...|.++.-+| .+.+++||+.|-.|++||... ++. +.. ....++|..+..+|.-. .|++..
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP-------l~~--~~v~GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP-------LFK--AKVGGGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc-------ccc--CccccceEEEEecchhhhHHHHHHH
Confidence 4 567889999998885 578999999999999999874 221 111 11226789999988543 444444
Q ss_pred CCeEEEEeCCCccee---eeeeccCCCCCEEEEEEecCCCEEEEEe-cCCeEE-EEeCCCC
Q 001336 960 ETQIAIYEAPKLECL---KQFVPREASGPITHATYSCDSQSIYVAF-EEGSVG-VLTASTL 1015 (1097)
Q Consensus 960 d~~v~vwd~~~~~~~---~~~~~~~h~~~v~~v~~s~dg~~l~s~s-~Dg~v~-vwd~~~~ 1015 (1097)
-+..+|-+.+.+... .......|.+-...-.|.....+|+|++ .|+.++ +|-..++
T Consensus 275 h~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 275 HNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred hcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 555566666544322 1111224555555555544445688765 466644 7765554
No 277
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.03 E-value=3.9e-07 Score=103.26 Aligned_cols=183 Identities=11% Similarity=0.038 Sum_probs=116.3
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEE
Q 001336 442 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA 521 (1097)
Q Consensus 442 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 521 (1097)
.++.++.++.|..+|..+|+.+-.+.-......... -++..++.++.++.+..+|.++++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~----v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG----ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE----EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 588888999999999999998876654332222222 2336788888999999999998888776654332111111
Q ss_pred EccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcce-----EEEEEcCCCCEEEEEeCCCcEEEEECCCCceE
Q 001336 522 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV-----GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL 596 (1097)
Q Consensus 522 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 596 (1097)
. .+..++.+.. ++.+..+|.++|+.+-.+..... .+ ...... +..++.+..+|.+..+|..+|+.+
T Consensus 143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe
Confidence 2 2345555443 44699999999988776654322 11 111111 247788888999999999999877
Q ss_pred EEEecCCCC--CC---cceEEEcC--CCCEEEEEECCCcEEEEEcCCC
Q 001336 597 ASIDADGGL--QA---SPCIRFNK--EGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 597 ~~~~~~~~~--~~---v~~v~~s~--~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
......... .. ...+.-+| .+..+++++.+|.++.||..++
T Consensus 214 W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 214 WEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred eeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 654321100 00 00111111 3557888888999999999887
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.97 E-value=3.5e-07 Score=114.63 Aligned_cols=261 Identities=9% Similarity=0.031 Sum_probs=162.4
Q ss_pred EEEEEccC-CceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEE
Q 001336 743 SRLIYTNS-GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYV 821 (1097)
Q Consensus 743 ~~l~~spd-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 821 (1097)
..++++++ +..+++-+.++.|.+|+........-+.. + ......|..-. ..-.....+++++++..|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~---g---~~G~~dG~~~~------a~f~~P~GIavd~~gn~L 638 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGST---G---EEGLRDGSFED------ATFNRPQGLAYNAKKNLL 638 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccC---C---CcCCCCCchhc------cccCCCcEEEEeCCCCEE
Confidence 46788874 66677777788899987653210000000 0 00000111000 122346789999998877
Q ss_pred EEEe--CCeEEEEEcCCCceeEEeCCC-----------------CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceE
Q 001336 822 MSAS--GGKISLFNMMTFKTMTTFMPP-----------------PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV 882 (1097)
Q Consensus 822 a~~s--dg~i~iwd~~~~~~~~~~~~~-----------------~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~ 882 (1097)
.++. .+.|+++|..++. +.++.+. -.....++|+|+++.++++...++.|++||..++..
T Consensus 639 YVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v 717 (1057)
T PLN02919 639 YVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT 717 (1057)
T ss_pred EEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence 7766 4779999987754 3333211 112467999995566777777889999999887754
Q ss_pred EEEecc---------c------ccCeEEEEEecCCCE-EEEEeCCCcEEEEEcCCCccccee---------eEeec--CC
Q 001336 883 KTKLKG---------H------QKRITGLAFSNTLNV-LVSSGADSQLCVWSTDGWEKQASK---------FLTIP--NG 935 (1097)
Q Consensus 883 ~~~l~~---------h------~~~V~~l~~s~dg~~-l~s~~~Dg~i~iwd~~~~~~~~~~---------~~~~~--~~ 935 (1097)
. .+.+ + -.....|+++|++.. +++.+.++.|++||+.++...... ..... .+
T Consensus 718 ~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 718 R-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred E-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 3 2211 1 123467999999984 455566789999999875421100 00000 00
Q ss_pred C--CCCccCCeEEEEcCCCcEEEE-EeCCeEEEEeCCCcceeeeeecc-----------CCCCCEEEEEEecCCCEEEEE
Q 001336 936 R--TASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPR-----------EASGPITHATYSCDSQSIYVA 1001 (1097)
Q Consensus 936 ~--~~~~~~v~~l~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~-----------~h~~~v~~v~~s~dg~~l~s~ 1001 (1097)
. .........++++++|.++++ ..++.|++||..++......... ++-.....+++++||+++++-
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred chhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence 0 000123468999999987666 57899999999887654322110 112357889999999999988
Q ss_pred ecCCeEEEEeCCCCce
Q 001336 1002 FEEGSVGVLTASTLRL 1017 (1097)
Q Consensus 1002 s~Dg~v~vwd~~~~~~ 1017 (1097)
+.+++|++||+.+++.
T Consensus 877 t~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 877 TNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCEEEEEECCCCcc
Confidence 8999999999998765
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.96 E-value=4.5e-07 Score=113.64 Aligned_cols=254 Identities=11% Similarity=0.064 Sum_probs=159.6
Q ss_pred eEEEEccCCC-EEEEEe-CCeEEEEEcCCCceeEEeCC--C------------CCCeEEEEEeCCCCCEEEEEE-CCCcE
Q 001336 810 PCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMTTFMP--P------------PPAATFLAFHPQDNNIIAIGM-EDSSI 872 (1097)
Q Consensus 810 ~~l~~s~dg~-~la~~s-dg~i~iwd~~~~~~~~~~~~--~------------~~~i~~l~~sp~~~~~la~g~-~dg~v 872 (1097)
..+++++++. ++++-. ++.|++||.. +..+..+.+ . -.....+++++ ++..|+++. ..+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 5688987644 444444 6889999985 444444332 1 12357899998 666555554 45789
Q ss_pred EEEEcccceEEEEeccc-----------------ccCeEEEEEec-CCCEEEEEeCCCcEEEEEcCCCcccceee---Ee
Q 001336 873 QIYNVRVDEVKTKLKGH-----------------QKRITGLAFSN-TLNVLVSSGADSQLCVWSTDGWEKQASKF---LT 931 (1097)
Q Consensus 873 ~vwd~~~~~~~~~l~~h-----------------~~~V~~l~~s~-dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~---~~ 931 (1097)
+++|+.++.. .++.+- -..-..++|+| ++..+++.+.++.|++||..++....... ..
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999887653 333210 11236799999 56667777788999999987754211000 00
Q ss_pred ecCCCC---CCccCCeEEEEcCCCcEEEEE--eCCeEEEEeCCCcceeeee-----------eccC--------CCCCEE
Q 001336 932 IPNGRT---ASALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLECLKQF-----------VPRE--------ASGPIT 987 (1097)
Q Consensus 932 ~~~~~~---~~~~~v~~l~~s~dg~~l~~~--~d~~v~vwd~~~~~~~~~~-----------~~~~--------h~~~v~ 987 (1097)
...+.. ........++++|+|.+|+++ .++.|++||++++...... .... .-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 000100 011345679999999866663 6789999999876532111 0000 011346
Q ss_pred EEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCc-CC-----CCCCCceeeEEEEEcCCCCCEEEEEecCCcEEE
Q 001336 988 HATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAY-LP-----TNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYI 1061 (1097)
Q Consensus 988 ~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~-~~-----~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~ 1061 (1097)
+++++++|.++++-+.+++|++||..++........... .. .+.-.. +..+++++ +|.++++-+.++.|++
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~--P~GIavd~-dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSE--PAGLALGE-NGRLFVADTNNSLIRY 884 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCC--ceEEEEeC-CCCEEEEECCCCEEEE
Confidence 899999999989888899999999988766543332110 00 011112 33457778 6789999999999999
Q ss_pred EecCCCCc
Q 001336 1062 IEPLEAEG 1069 (1097)
Q Consensus 1062 W~~~~~~~ 1069 (1097)
||+...+.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99987653
No 280
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.94 E-value=1e-08 Score=112.48 Aligned_cols=279 Identities=16% Similarity=0.259 Sum_probs=184.3
Q ss_pred ceeeCCCCCCcceeecCCC-------CceEEEEeec--CCCeeEEEEccCCC-eEEEEEeCCCeEEEEEcCCCceeeeee
Q 001336 290 PVAYTPQSLGQSSYSTDDL-------PKTVVMTLNQ--GSAVKSMDFHPVQQ-ILLVVGTNMGDVMLWEVGSRERIAVKS 359 (1097)
Q Consensus 290 ~~~~s~~~~~~~~~~~~~~-------~~~~~~~~~h--~~~V~~v~fspdg~-~lla~gs~dg~i~iwd~~~~~~~~~~~ 359 (1097)
.+..+|.|+.++.++..++ +...-+-+.| .-.|-.+.|||.-. -+-++......-.||++....-..
T Consensus 29 a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~a--- 105 (1081)
T KOG0309|consen 29 AVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNA--- 105 (1081)
T ss_pred ceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccc---
Confidence 3458888888777655543 2222233333 34677888887542 123444555566788876433221
Q ss_pred eeEeeccccCccccccccCCCCCCeEEEEEccC-CCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCC
Q 001336 360 FKVWELGACSMPLQASLSSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPN 438 (1097)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~ 438 (1097)
..-++.||+.+|+.+-|.|. -..||+++.|-.+..||+.+... .+.....-...-+.++|+...
T Consensus 106 -------------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~ 170 (1081)
T KOG0309|consen 106 -------------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKD 170 (1081)
T ss_pred -------------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCceeeecccC
Confidence 11247899999999999995 45789999999999999988642 222344444556789999877
Q ss_pred CcEEEEEEeCCCcEEEEECCCC-ceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecC-CCCc
Q 001336 439 KQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-PGHS 516 (1097)
Q Consensus 439 ~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~ 516 (1097)
. .+...+..+.|++||.+.| .++..+++|...|+.+.|..-.. ..+.+.+.||+|++||.+.......... ...+
T Consensus 171 p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~p 247 (1081)
T KOG0309|consen 171 P--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFP 247 (1081)
T ss_pred c--chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCc
Confidence 6 4667777889999999865 67789999999999998754333 4688999999999999986554443332 3346
Q ss_pred eEEEEEccCCCEEEEeeeCCCCCceEEE---------EeCCC-CeeeEEecCCCCcceEEEEEcC--------C--CCEE
Q 001336 517 STMMAYSADGARLFSCGTNKEGESYLVE---------WNESE-GAVKRTYHGLGKRSVGVVQFDT--------T--KNRF 576 (1097)
Q Consensus 517 v~~~~~s~~~~~l~~~~~~~~~~~~i~~---------wd~~~-~~~~~~~~~~~~~~v~~~~~~~--------~--~~~l 576 (1097)
|.--.+.|-|+-.++--..| ...+.+ |+..+ .+.+..|.||.+ .|...-|-. + .-.|
T Consensus 248 iw~~r~~Pfg~g~~~mp~~G--~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~rdfQL 324 (1081)
T KOG0309|consen 248 IWRGRYLPFGEGYCIMPMVG--GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSRDFQL 324 (1081)
T ss_pred ceeccccccCceeEeccccC--CeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCccceeE
Confidence 66666777555443332222 223333 33333 367899999987 443332221 1 2369
Q ss_pred EEEeCCCcEEEEECCC
Q 001336 577 LAAGDEFMIKFWDMDN 592 (1097)
Q Consensus 577 ~~~~~dg~i~iwd~~~ 592 (1097)
++-+.|..+++|-+.+
T Consensus 325 VTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 325 VTWSKDQTLRLWPIDS 340 (1081)
T ss_pred EEeecCCceEeeeccH
Confidence 9999999999998754
No 281
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.94 E-value=4.4e-07 Score=90.22 Aligned_cols=207 Identities=15% Similarity=0.136 Sum_probs=139.1
Q ss_pred EEEEccCCCEEEEEeCCeEEEEEcCCC--ceeEE---eCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEE
Q 001336 811 CFALSKNDSYVMSASGGKISLFNMMTF--KTMTT---FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK 885 (1097)
Q Consensus 811 ~l~~s~dg~~la~~sdg~i~iwd~~~~--~~~~~---~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~ 885 (1097)
.++.+.||++||+..|..|.|-..++. ..+.. .+.....-+.++||| |+.+||.+...|+|++||+...+ +..
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFV 79 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccce-eEE
Confidence 467889999999999999888766442 12222 233345578999999 99999999999999999988644 333
Q ss_pred ecc-------cccCeEEEEEecCC------CEEEEEeCCCcEEEEEcCCCc---ccceeeEeecCCCCCCccCCeEEEEc
Q 001336 886 LKG-------HQKRITGLAFSNTL------NVLVSSGADSQLCVWSTDGWE---KQASKFLTIPNGRTASALADTRVQFH 949 (1097)
Q Consensus 886 l~~-------h~~~V~~l~~s~dg------~~l~s~~~Dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~l~~s 949 (1097)
+.. -...|.++.|.+-. ..|+.-..+|.++=|-+..+. ......+....... .+|.++.++
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp---~Gi~~~vy~ 156 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP---HGINSAVYH 156 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC---CceeEEEEc
Confidence 322 12457777775432 245566778888877764332 22222222222222 579999999
Q ss_pred CCCcEEEEE--e---CC-------eEEEEeCCCcceeee---------------------e-----ec-cCCCCCEEEEE
Q 001336 950 LDQTHLLAV--H---ET-------QIAIYEAPKLECLKQ---------------------F-----VP-REASGPITHAT 990 (1097)
Q Consensus 950 ~dg~~l~~~--~---d~-------~v~vwd~~~~~~~~~---------------------~-----~~-~~h~~~v~~v~ 990 (1097)
|..++|+++ . ++ .+..|.+-++..--. . .. ......|..+.
T Consensus 157 p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmS 236 (282)
T PF15492_consen 157 PKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMS 236 (282)
T ss_pred CCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEE
Confidence 999988884 1 11 366666543311000 0 00 11256889999
Q ss_pred EecCCCEEEEEecCCeEEEEeCCCCceeeeeC
Q 001336 991 YSCDSQSIYVAFEEGSVGVLTASTLRLRCRIN 1022 (1097)
Q Consensus 991 ~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~ 1022 (1097)
.||||++||+...+|.|.+|++.+.++.....
T Consensus 237 lSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 237 LSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred ECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 99999999999999999999999998876665
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=4.4e-07 Score=102.34 Aligned_cols=216 Identities=10% Similarity=-0.008 Sum_probs=133.4
Q ss_pred CcceeecCCCCceEEEEeecCCCeeEEEEccCCCeEEEEEeC---CCeEEEEEcCCCceeeeeeeeEeeccccCcccccc
Q 001336 299 GQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTN---MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQAS 375 (1097)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (1097)
.|.+.+.|....+ .+.....+....|||||+.+++..+. +..|.++|+.+++...
T Consensus 170 ~l~~~d~dg~~~~---~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~------------------- 227 (419)
T PRK04043 170 NIVLADYTLTYQK---VIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK------------------- 227 (419)
T ss_pred eEEEECCCCCcee---EEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-------------------
Confidence 3556666654322 22222378899999999974454333 3578999998886543
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEE-CC--CEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCC--
Q 001336 376 LSSDYTASVNRVMWSPDGTLFGVAY-SK--HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR-- 450 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd~~~las~~-~d--g~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~-- 450 (1097)
+....+.+....|||||+.|+... .+ ..|.++|+.+++. ++ +..+........|+|||+.+++ +....+
T Consensus 228 -lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~---LT~~~~~d~~p~~SPDG~~I~F-~Sdr~g~~ 301 (419)
T PRK04043 228 -IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQ---ITNYPGIDVNGNFVEDDKRIVF-VSDRLGYP 301 (419)
T ss_pred -EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EE---cccCCCccCccEECCCCCEEEE-EECCCCCc
Confidence 223445566788999999877643 23 4688888887763 32 3334433445689999996333 332333
Q ss_pred cEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCC---------CeEEEEEcCCCCceeeecCCCCceEEEE
Q 001336 451 VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATD---------GKIKAWLYDNLGSRVDYDAPGHSSTMMA 521 (1097)
Q Consensus 451 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~ 521 (1097)
.|.+.|+.+|+..+.... ... ...| +++|+.|+..... ..|.+.|++++.... +... .......
T Consensus 302 ~Iy~~dl~~g~~~rlt~~-g~~--~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~ 374 (419)
T PRK04043 302 NIFMKKLNSGSVEQVVFH-GKN--NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPR 374 (419)
T ss_pred eEEEEECCCCCeEeCccC-CCc--CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeE
Confidence 688889888876443321 111 1355 5666777665543 257777877655432 3222 2334688
Q ss_pred EccCCCEEEEeeeCCCCCceEEEEeCCCC
Q 001336 522 YSADGARLFSCGTNKEGESYLVEWNESEG 550 (1097)
Q Consensus 522 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 550 (1097)
|+|||+.++..... .+...+.+.++...
T Consensus 375 ~SPDG~~I~f~~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 375 FSSDGGSIMFIKYL-GNQSALGIIRLNYN 402 (419)
T ss_pred ECCCCCEEEEEEcc-CCcEEEEEEecCCC
Confidence 99999999888754 34556777777654
No 283
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.92 E-value=8.2e-09 Score=123.92 Aligned_cols=200 Identities=14% Similarity=0.243 Sum_probs=161.8
Q ss_pred CCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001336 378 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 457 (1097)
Q Consensus 378 ~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~ 457 (1097)
..+-..|.++.=+|...+-++|+.||.|++|....++.+....+. |. ..|+.+.|+.+|+ .+..+..||.+.+|.+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeeccc
Confidence 345567888888899999999999999999999999887765443 34 8899999999999 7899999999999996
Q ss_pred CCCceeEEeecCCcCeEEEeecccCCccEEEEEc---CCCeEEEEEcCCCC-ceeeecCCCCceEEEEEccCCCEEEEee
Q 001336 458 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA---TDGKIKAWLYDNLG-SRVDYDAPGHSSTMMAYSADGARLFSCG 533 (1097)
Q Consensus 458 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 533 (1097)
. .+.....+.|.....+..|.. ..+++++ .++.+.+||.-... .-.....|.+.++++++.|....+++||
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred C-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 5 677778888998888888754 3466654 57889999865332 2233477888999999999999999998
Q ss_pred eCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 001336 534 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 601 (1097)
Q Consensus 534 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 601 (1097)
.+| .|.+||++..++++.++. +. ...+|++|+..|.|+||++..-.++..+..
T Consensus 2356 r~G----~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 RKG----EVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CcC----cEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 754 599999999888877765 23 457899999999999999998877777643
No 284
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.87 E-value=2.8e-08 Score=102.47 Aligned_cols=159 Identities=14% Similarity=0.069 Sum_probs=112.8
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE----EeCCeEEEEeC
Q 001336 893 ITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA----VHETQIAIYEA 968 (1097)
Q Consensus 893 V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~----~~d~~v~vwd~ 968 (1097)
...+..++.+++||.+..+....++++..... ..+.+...... ..-+++.|..+.....+ +....+.+|..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~----~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVP----KRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecc----cCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 34456677888888887777776777665332 22222222211 12455666655555444 24467777777
Q ss_pred CCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCC
Q 001336 969 PKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPN 1048 (1097)
Q Consensus 969 ~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~ 1048 (1097)
..+.+...+ ||-..++.++||||+++|+++..|..|+|=.+..-..+ .-++.||..-|..+++. +++
T Consensus 140 ~~~~~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I------esfclGH~eFVS~isl~----~~~ 206 (390)
T KOG3914|consen 140 DSGRCEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI------ESFCLGHKEFVSTISLT----DNY 206 (390)
T ss_pred cccCcchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccch------hhhccccHhheeeeeec----cCc
Confidence 765554444 89999999999999999999999999999887664333 23455899999999875 678
Q ss_pred EEEEEecCCcEEEEecCCCCc
Q 001336 1049 QFALGLTDGGVYIIEPLEAEG 1069 (1097)
Q Consensus 1049 ~l~s~~~Dg~v~~W~~~~~~~ 1069 (1097)
.|+++|.|++|++||+.++..
T Consensus 207 ~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred eeeecCCCCcEEEEecccCCc
Confidence 899999999999999988764
No 285
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=8.9e-09 Score=108.88 Aligned_cols=220 Identities=15% Similarity=0.238 Sum_probs=161.9
Q ss_pred eEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEccc-------ceEEEEecccccCeEEEEEecCCCEEEEEeCCC
Q 001336 840 MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-------DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS 912 (1097)
Q Consensus 840 ~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg 912 (1097)
+..+.+|...|+.++--. +.+-+++++.|++|++|.++. ..+..+++.|..+|.++.|-.+-+.++++ ||
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 445778998898887665 677889999999999999863 24677889999999999999999888866 78
Q ss_pred cEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcC--CCcEEEE--EeCCeEEEEeCCCcceeeeeec---cCCCCC
Q 001336 913 QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHL--DQTHLLA--VHETQIAIYEAPKLECLKQFVP---REASGP 985 (1097)
Q Consensus 913 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--dg~~l~~--~~d~~v~vwd~~~~~~~~~~~~---~~h~~~ 985 (1097)
.|.+||.--++... ++...... +.+..+..-+ |...+.+ +...+|+++|...++-...+.. .+..+-
T Consensus 805 giHlWDPFigr~La----q~~dapk~--~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLA----QMEDAPKE--GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred cceeecccccchhH----hhhcCccc--CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence 99999977655322 11111111 2223332222 4444444 4678999999999988777763 233567
Q ss_pred EEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEE-Eec
Q 001336 986 ITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYI-IEP 1064 (1097)
Q Consensus 986 v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~-W~~ 1064 (1097)
+++++.-+.|.+|+.+-..|+|.+.|.++|+.+..+.+.. .....+ + .| ..+.|+....|.++.+ |-.
T Consensus 879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme-------cdllql--a-ap-sdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 879 TRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME-------CDLLQL--A-AP-SDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred eeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc-------chhhhh--c-Cc-hhHHHHhhcccceeEeeehh
Confidence 9999999999999999999999999999999876665332 111112 2 24 3467888888999999 999
Q ss_pred CCCCcccCCCCCCCC
Q 001336 1065 LEAEGRWGTSPPNEN 1079 (1097)
Q Consensus 1065 ~~~~~~~~~~~~~~~ 1079 (1097)
.++-+....-||.+.
T Consensus 948 ldgimh~q~kpppep 962 (1034)
T KOG4190|consen 948 LDGIMHLQDKPPPEP 962 (1034)
T ss_pred cCCeeeeccCCCCcc
Confidence 999888888887754
No 286
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.82 E-value=0.00082 Score=78.15 Aligned_cols=576 Identities=12% Similarity=0.123 Sum_probs=283.5
Q ss_pred EccCCCEEEEEECCCEEEEEEcc-CCeeeee---eeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee-
Q 001336 389 WSPDGTLFGVAYSKHIVHLYTYH-GGDELRN---HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ- 463 (1097)
Q Consensus 389 ~spd~~~las~~~dg~i~iwd~~-~~~~~~~---~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~- 463 (1097)
...+|...+.|..+|.+...-+. +++...- ....-|...-..|+..-++| .+.+||.-|.=.+-.+.+....
T Consensus 265 v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng---~lFvGS~~gdSqLi~L~~e~d~g 341 (1096)
T KOG1897|consen 265 VDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG---VLFVGSRFGDSQLIKLNTEPDVG 341 (1096)
T ss_pred ccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc---eEEEeccCCceeeEEccccCCCC
Confidence 45577788888888877655544 3332221 11233455556777777777 5888888776566655443222
Q ss_pred ------EEeecCCcCeEEEeecccC--CccEEEEEc---CCCeEEEEEcCCCCce---eeecCCCCceEEEE--------
Q 001336 464 ------YIFEGHESPVYSICPHHKE--NIQFIFSTA---TDGKIKAWLYDNLGSR---VDYDAPGHSSTMMA-------- 521 (1097)
Q Consensus 464 ------~~~~~h~~~v~~~~~~~~~--~~~~l~s~~---~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~-------- 521 (1097)
.++. .-++|.+++..... .+..+++++ .||++|+..-.-+-.. ..+.+ -..+..+.
T Consensus 342 sy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d 419 (1096)
T KOG1897|consen 342 SYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYD 419 (1096)
T ss_pred chhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCC
Confidence 2232 34678888764433 233455543 5889988843211110 01111 01122222
Q ss_pred ---------------------------EccCCCEEEEeeeCCCC-----CceEEEEeCCCCeeeEEecCCCCcceEEEEE
Q 001336 522 ---------------------------YSADGARLFSCGTNKEG-----ESYLVEWNESEGAVKRTYHGLGKRSVGVVQF 569 (1097)
Q Consensus 522 ---------------------------~s~~~~~l~~~~~~~~~-----~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~ 569 (1097)
|+.+...+++....++. ...|++++-. ..+..+.... .++....
T Consensus 420 ~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~p~--~~ti~~~ 495 (1096)
T KOG1897|consen 420 NYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRPPG--KITIGVV 495 (1096)
T ss_pred cEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccCCC--ceEEEEE
Confidence 12222222222211110 1113333322 1112222222 2333334
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCC--C----CEEEEEECCCcEEEEEcCCCceEEEE
Q 001336 570 DTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE--G----ILLAVSTNDNGIKILANADGIRLLRT 643 (1097)
Q Consensus 570 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~----~~l~s~~~dg~i~iw~~~~~~~~~~~ 643 (1097)
+.+...++.++.++.+...+...+. +.....+.....|.|+.++|- + +++++|..+..+.+.-..........
T Consensus 496 ~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~ 574 (1096)
T KOG1897|consen 496 SANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITH 574 (1096)
T ss_pred eecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeee
Confidence 4444567777777777777777665 333333344567899999984 2 27888877766655443332122211
Q ss_pred ecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccC
Q 001336 644 VESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEIT 723 (1097)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~ 723 (1097)
.+-.... +|..- -...+.+ +..++.++..||.+..+-++..+
T Consensus 575 ~~l~~~~---iPRSI-----------------------------l~~~~e~------d~~yLlvalgdG~l~~fv~d~~t 616 (1096)
T KOG1897|consen 575 EQLSGEI---IPRSI-----------------------------LLTTFEG------DIHYLLVALGDGALLYFVLDINT 616 (1096)
T ss_pred eccCCCc---cchhe-----------------------------eeEEeec------cceEEEEEcCCceEEEEEEEccc
Confidence 1110000 00000 0111222 25678888888888766554322
Q ss_pred --CCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCC
Q 001336 724 --EPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS 801 (1097)
Q Consensus 724 --~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 801 (1097)
.....+. .....++.=-.|+..++.-+.+.+|.-..+|.. ++++....+.
T Consensus 617 g~lsd~Kk~-----~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-----------------------n~kLv~spls 668 (1096)
T KOG1897|consen 617 GQLSDRKKV-----TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS-----------------------NGKLVYSPLS 668 (1096)
T ss_pred ceEcccccc-----ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-----------------------CCcEEEeccc
Confidence 1111100 112334444456655555555555544444421 1111111110
Q ss_pred CCCCCCCee-EEEEcc--CCCEEEEEeCCeEEEEEcCCCce--eEEeCCCCCCeEEEEEeCCCCCEEEEEEC--------
Q 001336 802 DTNPEDAVP-CFALSK--NDSYVMSASGGKISLFNMMTFKT--MTTFMPPPPAATFLAFHPQDNNIIAIGME-------- 868 (1097)
Q Consensus 802 ~~~h~~~v~-~l~~s~--dg~~la~~sdg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~sp~~~~~la~g~~-------- 868 (1097)
-..+. .+.|+. -...++++..+.+++.-++.-+. ++++. -......+++.+ ....+++.+.
T Consensus 669 ----~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~ 742 (1096)
T KOG1897|consen 669 ----LKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEY 742 (1096)
T ss_pred ----hHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhh
Confidence 01111 112222 23467777777788777654332 23322 223455566654 3334433321
Q ss_pred ---C---CcEEEEEcccceEEEEecc--c--ccCeEEEEEecC-CCEEEEEeC----------CCcEEEEEcCCCcccce
Q 001336 869 ---D---SSIQIYNVRVDEVKTKLKG--H--QKRITGLAFSNT-LNVLVSSGA----------DSQLCVWSTDGWEKQAS 927 (1097)
Q Consensus 869 ---d---g~v~vwd~~~~~~~~~l~~--h--~~~V~~l~~s~d-g~~l~s~~~----------Dg~i~iwd~~~~~~~~~ 927 (1097)
. ..++++|-++-+.+...+- . .-.|.++.|..| +.+++.|.. .|.|.++.+.......
T Consensus 743 ~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~- 821 (1096)
T KOG1897|consen 743 YGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLE- 821 (1096)
T ss_pred cCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCcee-
Confidence 1 1366666666554433221 1 123556668877 666766642 4677777776622111
Q ss_pred eeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeE
Q 001336 928 KFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSV 1007 (1097)
Q Consensus 928 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v 1007 (1097)
.+ .+.... +.+.++ ---...++++-...|++|++.+.+.++.-. .|..++..+...-.|..+++|..-+++
T Consensus 822 -~v--~e~~v~--Gav~aL--~~fngkllA~In~~vrLye~t~~~eLr~e~--~~~~~~~aL~l~v~gdeI~VgDlm~Si 892 (1096)
T KOG1897|consen 822 -LV--AETVVK--GAVYAL--VEFNGKLLAGINQSVRLYEWTTERELRIEC--NISNPIIALDLQVKGDEIAVGDLMRSI 892 (1096)
T ss_pred -ee--eeeeec--cceeeh--hhhCCeEEEecCcEEEEEEccccceehhhh--cccCCeEEEEEEecCcEEEEeeccceE
Confidence 11 110000 112222 222234555678899999999886655444 678899999999999999999988877
Q ss_pred EEEeCCC--CceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCC
Q 001336 1008 GVLTAST--LRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1066 (1097)
Q Consensus 1008 ~vwd~~~--~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~ 1066 (1097)
.+..... |...-... .+ +.....++.+- +++.++-+..+|.+++-...+
T Consensus 893 tll~y~~~eg~f~evAr--D~----~p~Wmtaveil----~~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 893 TLLQYKGDEGNFEEVAR--DY----NPNWMTAVEIL----DDDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred EEEEEeccCCceEEeeh--hh----CccceeeEEEe----cCceEEeecccccEEEEEecC
Confidence 7655444 33432222 00 11223333332 456777777788877776653
No 287
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.80 E-value=2.3e-06 Score=88.21 Aligned_cols=184 Identities=13% Similarity=0.147 Sum_probs=128.8
Q ss_pred eEEEEccCCCEEEEEe-C-----CeEEEEEcC-CCceeEEeCCCCCCeEEEEEeCCCCCEEEEEEC--------------
Q 001336 810 PCFALSKNDSYVMSAS-G-----GKISLFNMM-TFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME-------------- 868 (1097)
Q Consensus 810 ~~l~~s~dg~~la~~s-d-----g~i~iwd~~-~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~-------------- 868 (1097)
-.-+||+||++|.+.. | |.|-|||.. +.+.+.++..+.-....+.+.| |++.|+++..
T Consensus 54 GHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLN 132 (305)
T PF07433_consen 54 GHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLN 132 (305)
T ss_pred cCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecC
Confidence 3578999999999874 2 679999998 7788888887777778888999 8877777631
Q ss_pred ----CCcEEEEEcccceEEEE--e--cccccCeEEEEEecCCCEEEEEeCCC-------cEEEEEcCCCcccceeeEeec
Q 001336 869 ----DSSIQIYNVRVDEVKTK--L--KGHQKRITGLAFSNTLNVLVSSGADS-------QLCVWSTDGWEKQASKFLTIP 933 (1097)
Q Consensus 869 ----dg~v~vwd~~~~~~~~~--l--~~h~~~V~~l~~s~dg~~l~s~~~Dg-------~i~iwd~~~~~~~~~~~~~~~ 933 (1097)
+-.+-..|..+|+++.+ + ..|...|..+++.++|..++-.-..| .|-+++-.. . ...+..+
T Consensus 133 l~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~--~~~~~~p 208 (305)
T PF07433_consen 133 LDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--A--LRLLPAP 208 (305)
T ss_pred hhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--c--ceeccCC
Confidence 12455567788888766 4 34888999999999987666543332 133333222 1 1112221
Q ss_pred CCC-CCCccCCeEEEEcCCCcEEEEE--eCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEec
Q 001336 934 NGR-TASALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFE 1003 (1097)
Q Consensus 934 ~~~-~~~~~~v~~l~~s~dg~~l~~~--~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~ 1003 (1097)
... ......+-++++++++.+++++ ..+.+.+||..+++.+.... -..+..++-.+++ ++++.+.
T Consensus 209 ~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 209 EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-eEEeCCC
Confidence 111 1122568999999999999885 56899999999999988776 3467777777777 6665553
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.80 E-value=5.9e-08 Score=100.18 Aligned_cols=163 Identities=17% Similarity=0.141 Sum_probs=110.5
Q ss_pred eeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEE--
Q 001336 322 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA-- 399 (1097)
Q Consensus 322 V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~-- 399 (1097)
+..+..+|+++ |+|++..+....+.++..... ..+.++.. ... ..-+++.|-.+...+..+
T Consensus 65 ~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~---------~v~---~~~~ai~~~~~~~sv~v~dk 127 (390)
T KOG3914|consen 65 PALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVS---------CVP---KRPTAISFIREDTSVLVADK 127 (390)
T ss_pred ccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEe---------ecc---cCcceeeeeeccceEEEEee
Confidence 33556667776 567777777766666654432 11111110 011 122334444444444444
Q ss_pred -ECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEe-ecCCcCeEEEe
Q 001336 400 -YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGHESPVYSIC 477 (1097)
Q Consensus 400 -~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~ 477 (1097)
+....+.+|+...+.+. .+-||-..++.++|+||++ .|+++..|..|++-....-..+..| -||+.-|..++
T Consensus 128 agD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is 201 (390)
T KOG3914|consen 128 AGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS 201 (390)
T ss_pred cCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeee
Confidence 44556667776654433 2668999999999999999 8999999999999887766666554 57999999998
Q ss_pred ecccCCccEEEEEcCCCeEEEEEcCCCCceeee
Q 001336 478 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY 510 (1097)
Q Consensus 478 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 510 (1097)
... + ..|+++|.|++|++||+.+++....+
T Consensus 202 l~~--~-~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 202 LTD--N-YLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred ecc--C-ceeeecCCCCcEEEEecccCCccccc
Confidence 733 2 57999999999999999998877544
No 289
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=5.2e-07 Score=100.79 Aligned_cols=508 Identities=12% Similarity=0.137 Sum_probs=252.2
Q ss_pred EEEEccCCCeEEEEEeC----CCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEE
Q 001336 324 SMDFHPVQQILLVVGTN----MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 399 (1097)
Q Consensus 324 ~v~fspdg~~lla~gs~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 399 (1097)
-..|+|... ++|+++. .|.|.||- ++|+....- .-.-.+++++|+|..-.||.|
T Consensus 20 i~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~V--------------------t~P~hatSLCWHpe~~vLa~g 77 (1416)
T KOG3617|consen 20 ISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDV--------------------TYPVHATSLCWHPEEFVLAQG 77 (1416)
T ss_pred ccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCccc--------------------ccceehhhhccChHHHHHhhc
Confidence 456888887 4566653 47788874 344432211 012246679999999999999
Q ss_pred ECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE--EeecC--CcCeEE
Q 001336 400 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY--IFEGH--ESPVYS 475 (1097)
Q Consensus 400 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~h--~~~v~~ 475 (1097)
..-|.+.+|...+.+.-. ....|..+|..+.||++|. .++|+..-|.|.+|....-..+. .+-.| ...++-
T Consensus 78 we~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl 152 (1416)
T KOG3617|consen 78 WEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTL 152 (1416)
T ss_pred cccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeE
Confidence 999999999988754322 2456999999999999999 89999999999999876322222 12223 233444
Q ss_pred EeecccCCcc------EEEEEcCCCeEE-EEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCC
Q 001336 476 ICPHHKENIQ------FIFSTATDGKIK-AWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 548 (1097)
Q Consensus 476 ~~~~~~~~~~------~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 548 (1097)
++|--..++. ..+..++++.+- .++++.......... .=.|+|..++.++.+| +|+-.|-
T Consensus 153 ~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~k--------sgv~~g~~F~~~~~~G----tVyyvdq- 219 (1416)
T KOG3617|consen 153 WCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEK--------SGVPKGTEFLFAGKSG----TVYYVDQ- 219 (1416)
T ss_pred EEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccc--------cCCCCCcEEEEEcCCc----eEEEEcC-
Confidence 4443333321 223334444433 443332111111110 1136677666666543 4554442
Q ss_pred CCeeeEEecCCCCcceEEEEEcCCCCEEEEE------------------------------eCCCcEEEEECCCCce--E
Q 001336 549 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAA------------------------------GDEFMIKFWDMDNVNL--L 596 (1097)
Q Consensus 549 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------------------------------~~dg~i~iwd~~~~~~--~ 596 (1097)
.|++........ .|. +-|.+...-+++. +..|.|.+=... |-+ -
T Consensus 220 ~g~~~~V~k~dS--~vQ-mLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEss-GvLr~~ 295 (1416)
T KOG3617|consen 220 NGRQRTVHKLDS--EVQ-MLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESS-GVLRKS 295 (1416)
T ss_pred CCcEEEEEEccc--hHH-HHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccc-ccccCC
Confidence 233322222111 000 1111111111111 111111111100 100 0
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccc
Q 001336 597 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVG 676 (1097)
Q Consensus 597 ~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1097)
..+. ......++|++++..+..++.|...|.+.+|.-... .+.+
T Consensus 296 eKyg-~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~-----~f~g------------------------------ 339 (1416)
T KOG3617|consen 296 EKYG-LELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNK-----GFQG------------------------------ 339 (1416)
T ss_pred cchh-hhcCCceEEEEEeccceEEEecccCCcEEEeeecCc-----cccC------------------------------
Confidence 0010 012346789999999999999999999999953221 0111
Q ss_pred cccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeee
Q 001336 677 TSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILA 756 (1097)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~ 756 (1097)
+.++..|.+.+.. ...+.|+.+.|.|-...++.
T Consensus 340 ----------------------------------~p~~d~w~l~~~~-------------e~~g~I~~i~Wg~~k~~~av 372 (1416)
T KOG3617|consen 340 ----------------------------------DPTIDVWTLNGKR-------------ESLGKISLIRWGPIKSTAAV 372 (1416)
T ss_pred ----------------------------------CCCcceEEecCch-------------hhccceEEEEeccccchhhh
Confidence 0134455554321 13467888888886665555
Q ss_pred eccCcEEEEeccCCCCCCccCcccc----ccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEE
Q 001336 757 LASNAVHKLWKWPRNERNSTGKATT----NQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLF 832 (1097)
Q Consensus 757 ~~~dg~i~vw~~~~~~~~~~~~~~~----~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sdg~i~iw 832 (1097)
-+....+.+=.-+ -.....++..+ +..+.+-..-+|.... +. ..-++..++.+. +.++...+.+|..|
T Consensus 373 n~~~~v~ll~E~~-l~~~h~~~~~A~q~ss~S~~L~hc~sGv~~~--l~---~~~~~~gi~l~e--~~lvvwNgr~v~~y 444 (1416)
T KOG3617|consen 373 NTEEDVVLLGENS-LTVKHRGKMAAIQTSSNSFTLLHCTSGVSQD--LK---LSIPSAGICLGE--KQLVVWNGRTVVTY 444 (1416)
T ss_pred hhhhheeeeccCc-hHHHHhhhhHHhhhcCCceEEEeeccchhhh--hh---hccchhhheecc--ceEEEEcCceEEEE
Confidence 4443333321000 00000000000 0001111111121111 00 122333444432 34555556778888
Q ss_pred EcCCCceeEEe--CCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEe--cccccCeEEEEEecCCCEEEEE
Q 001336 833 NMMTFKTMTTF--MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL--KGHQKRITGLAFSNTLNVLVSS 908 (1097)
Q Consensus 833 d~~~~~~~~~~--~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l--~~h~~~V~~l~~s~dg~~l~s~ 908 (1097)
++.+...+.+. .......+.++.. +.++...++.+ |.++.+. |.+.+.+ ..-.+.|..+..+ |.+++..
T Consensus 445 ~lq~SG~la~~~~~tF~cet~~la~~--nqN~ycies~~--Vfvrt~q-Gtv~q~i~~seiEg~~~~ldi~--g~~l~v~ 517 (1416)
T KOG3617|consen 445 DLQTSGSLATIQCTTFSCETTSLAIV--NQNLYCIESDK--VFVRTLQ-GTVRQEISLSEIEGVVVLLDIM--GELLIVQ 517 (1416)
T ss_pred EecccchhHHHhhhhhccccchHhHh--hcceEEeccCc--EEEEecc-hhhhhhccchhccCceehhhhc--cceeEEe
Confidence 88532211111 1112233444444 23444444444 4444433 3333322 2233445555544 7888888
Q ss_pred eCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE---Ee----CCeEEEEeCCCcce
Q 001336 909 GADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA---VH----ETQIAIYEAPKLEC 973 (1097)
Q Consensus 909 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~---~~----d~~v~vwd~~~~~~ 973 (1097)
...+.++-+|+...+...........+.....+....+..+..|..+.+ +. -.++.+||.+.+..
T Consensus 518 t~~~~~k~~dvsr~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~ 589 (1416)
T KOG3617|consen 518 TVSTVAKRLDVSRAELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRF 589 (1416)
T ss_pred ehHHHHHHhhhhhhcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhH
Confidence 8888888888887665443333333333333356677777766654433 22 25799999987654
No 290
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.78 E-value=2.9e-08 Score=119.45 Aligned_cols=221 Identities=13% Similarity=0.184 Sum_probs=163.3
Q ss_pred CEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeec-CCcC
Q 001336 394 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG-HESP 472 (1097)
Q Consensus 394 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-h~~~ 472 (1097)
+..+....++...-|..+.+... +..|-..|.++.=+|... +.+||+.||.|++|....+..+..++. -...
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~~-----~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~ 2253 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVM-----IKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSR 2253 (2439)
T ss_pred ccCCcccCCccccceecccceeE-----eecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcch
Confidence 33344444555555555443321 334556688888888887 789999999999999999988887753 2377
Q ss_pred eEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC--
Q 001336 473 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-- 550 (1097)
Q Consensus 473 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-- 550 (1097)
|+.+.| ...|+.+..+..||.+.+|... .+.......|......+.|-. ..+++.+.+.+ ++.+.+||..-.
T Consensus 2254 vtr~~f--~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~~ 2327 (2439)
T KOG1064|consen 2254 VTRSRF--NHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPPM 2327 (2439)
T ss_pred hhhhhh--cccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCcc
Confidence 888887 4556788888999999999877 455556667777777777765 66777776654 557999996432
Q ss_pred -eeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcE
Q 001336 551 -AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI 629 (1097)
Q Consensus 551 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i 629 (1097)
.++. ..|.. .++++++.|....|++||.+|.|++||++..++++.++. ++ ...++++|+..|.+
T Consensus 2328 ~s~v~--~~H~~-gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~i 2392 (2439)
T KOG1064|consen 2328 NSLVH--TCHDG-GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNI 2392 (2439)
T ss_pred cceee--eecCC-CceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccce
Confidence 2333 55555 899999999999999999999999999998887776653 33 46799999999999
Q ss_pred EEEEcCCCceEEEE
Q 001336 630 KILANADGIRLLRT 643 (1097)
Q Consensus 630 ~iw~~~~~~~~~~~ 643 (1097)
+||++..- ..+..
T Consensus 2393 kIw~~s~~-~ll~~ 2405 (2439)
T KOG1064|consen 2393 KIWRLSEF-GLLHT 2405 (2439)
T ss_pred EEEEcccc-chhhc
Confidence 99998764 34433
No 291
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=2.5e-06 Score=95.60 Aligned_cols=339 Identities=15% Similarity=0.133 Sum_probs=186.8
Q ss_pred EEEEEccCCCEEEEEE----CCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001336 385 NRVMWSPDGTLFGVAY----SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 460 (1097)
Q Consensus 385 ~~v~~spd~~~las~~----~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 460 (1097)
+-.+|+|...++|+++ ..|.|-||- ++|++-+ ..+..-| +++++|+|..- +|+.|-.-|.+.+|...+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr-~Vt~P~h---atSLCWHpe~~--vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR-DVTYPVH---ATSLCWHPEEF--VLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc-cccccee---hhhhccChHHH--HHhhccccceeEEEecCCc
Confidence 3467999999998886 357888884 4454222 1122223 56799999876 7889989999999997777
Q ss_pred ceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCC----C--ceEEEEEccCCCEE-----
Q 001336 461 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG----H--SSTMMAYSADGARL----- 529 (1097)
Q Consensus 461 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~--~v~~~~~s~~~~~l----- 529 (1097)
+.-.....|..+|..+.| +++|..++++..-|.+.+|..+..+.......-. . ...+...++++.-+
T Consensus 92 e~htv~~th~a~i~~l~w--S~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laK 169 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDW--SHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAK 169 (1416)
T ss_pred eeeeeccCCCCCceeEEe--cCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhh
Confidence 666666789999999999 5667899999999999999887443332211111 1 23444556664321
Q ss_pred -EEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCc
Q 001336 530 -FSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS 608 (1097)
Q Consensus 530 -~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 608 (1097)
++.+ |...--...-|..+.. .+... -.-.|+|..++.++.+|+|+--|- .|+.....+... .
T Consensus 170 aaVtg-De~alD~~fnwk~~~a--~rs~~---------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS---~- 232 (1416)
T KOG3617|consen 170 AAVTG-DESALDEPFNWKESLA--ERSDE---------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDS---E- 232 (1416)
T ss_pred hhccC-chhhhcccccCccchh--hcccc---------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccc---h-
Confidence 1221 1111001112221111 11110 112467888999999999988774 455555554321 1
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEEc-CCCceEEEEecccccccccccccccccCCcccccccCcccccccccccccccc
Q 001336 609 PCIRFNKEGILLAVSTNDNGIKILAN-ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAA 687 (1097)
Q Consensus 609 ~~v~~s~~~~~l~s~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1097)
..+-|.+...-+.+.-.+-++.++-. .+| .......
T Consensus 233 vQmLf~~~~eai~~i~e~lr~~l~~v~~~G---------~~ee~~~---------------------------------- 269 (1416)
T KOG3617|consen 233 VQMLFMGYCEAISIIIEFLRDCLIFVLAKG---------TSEERCA---------------------------------- 269 (1416)
T ss_pred HHHHHhcccceEEEEeeeceeeEEEecCCC---------chHHhhh----------------------------------
Confidence 23455554444444333333333222 111 0000000
Q ss_pred ccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEec
Q 001336 688 AMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 767 (1097)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~ 767 (1097)
+.+++. .......++++...|.++ +.. .........+.|++|+..+..+..+...|.+.+|.
T Consensus 270 --vk~sgk--~GgrqGgiA~sEssGvLr---------~~e-----Kyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~ 331 (1416)
T KOG3617|consen 270 --VKVSGK--LGGRQGGIACSESSGVLR---------KSE-----KYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWL 331 (1416)
T ss_pred --hhhccc--cCCccCcccccccccccc---------CCc-----chhhhcCCceEEEEEeccceEEEecccCCcEEEee
Confidence 000000 000001122222222111 000 00112457899999999999999999999999995
Q ss_pred cCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe
Q 001336 768 WPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS 825 (1097)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s 825 (1097)
-.... .....++..|.+.+... ..+.|+.+.|.|-...+++.+
T Consensus 332 ~v~~~------f~g~p~~d~w~l~~~~e---------~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 332 DVNKG------FQGDPTIDVWTLNGKRE---------SLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred ecCcc------ccCCCCcceEEecCchh---------hccceEEEEeccccchhhhhh
Confidence 33221 22222345565543322 346788899988666655544
No 292
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=4.1e-08 Score=103.96 Aligned_cols=309 Identities=10% Similarity=0.140 Sum_probs=188.3
Q ss_pred CCCCcceeecCCC-----------CceEEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCC-ceeeeeeeeE
Q 001336 296 QSLGQSSYSTDDL-----------PKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSR-ERIAVKSFKV 362 (1097)
Q Consensus 296 ~~~~~~~~~~~~~-----------~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~-~~~~~~~~~~ 362 (1097)
.|++++.|..... ....+..+. |...|..++--.+.+. +++++.|.+|++|.++.. ..+.+.
T Consensus 700 kGn~lA~W~~ets~~e~dt~~ln~~~irL~nf~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~ts---- 774 (1034)
T KOG4190|consen 700 KGNLLAVWCAETSAAECDTDNLNFDHIRLCNFTGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGTS---- 774 (1034)
T ss_pred ccchHHHHHhhhhHhhcCCcccccceeeeecccCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCccccc----
Confidence 5667777744332 122233333 8888998875555543 478999999999998743 222111
Q ss_pred eeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecC-CCcE
Q 001336 363 WELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP-NKQL 441 (1097)
Q Consensus 363 ~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d-~~~~ 441 (1097)
.|.. .+..|+.+|..+.|-.|-++++++ ||-|++||.--|..+.++..- ...+.+..+..-++ ...+
T Consensus 775 ----aCQf-----TY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~da-pk~~a~~~ikcl~nv~~~i 842 (1034)
T KOG4190|consen 775 ----ACQF-----TYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDA-PKEGAGGNIKCLENVDRHI 842 (1034)
T ss_pred ----eeee-----EhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcC-cccCCCceeEecccCcchh
Confidence 1111 256799999999999999998876 788999998777655433211 12223333333344 3332
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEee-----cCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCc
Q 001336 442 SVVTCGEDRVIKVWDAVTGTKQYIFE-----GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHS 516 (1097)
Q Consensus 442 ~l~s~s~d~~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 516 (1097)
+++.|+...+|+++|.+.++...+++ +..+-+.++++ .+.|+.++.+-.+|.|.+.|.+++.....+....-.
T Consensus 843 liAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV--a~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecd 920 (1034)
T KOG4190|consen 843 LIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV--ADKGNKLAAALSNGCIAILDARNGKVINSWRPMECD 920 (1034)
T ss_pred eeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe--ccCcchhhHHhcCCcEEEEecCCCceeccCCcccch
Confidence 44455889999999999988777664 34456788887 455688999999999999999987766554443332
Q ss_pred eEEEEEccCCCEEEEeeeCCCCCceEEE-EeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECC----
Q 001336 517 STMMAYSADGARLFSCGTNKEGESYLVE-WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD---- 591 (1097)
Q Consensus 517 v~~~~~s~~~~~l~~~~~~~~~~~~i~~-wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---- 591 (1097)
...++ .|....++.... +..+.+ |-...+........... +.. ..-.-|..+++......+.+|.-.
T Consensus 921 llqla-apsdq~L~~sal----dHslaVnWhaldgimh~q~kpppe-pah--flqsvgpSLV~a~~Gn~lgVYad~a~~h 992 (1034)
T KOG4190|consen 921 LLQLA-APSDQALAQSAL----DHSLAVNWHALDGIMHLQDKPPPE-PAH--FLQSVGPSLVTAQNGNILGVYADSAELH 992 (1034)
T ss_pred hhhhc-CchhHHHHhhcc----cceeEeeehhcCCeeeeccCCCCc-chh--hhhccCceeEEeccCcEEEEEecchhhh
Confidence 22222 244444444332 234555 76666654444332221 111 111234567777766777777421
Q ss_pred CCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEE
Q 001336 592 NVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI 631 (1097)
Q Consensus 592 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~i 631 (1097)
....+..+......+..++++.-|-+.-+..|...|.|.+
T Consensus 993 a~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 993 AESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 1222334444344556678888886666677888888765
No 293
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.76 E-value=6.7e-06 Score=84.90 Aligned_cols=254 Identities=14% Similarity=0.181 Sum_probs=154.8
Q ss_pred eEEEEccCCCeEEEEEeCCC-eEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEE-
Q 001336 323 KSMDFHPVQQILLVVGTNMG-DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY- 400 (1097)
Q Consensus 323 ~~v~fspdg~~lla~gs~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~- 400 (1097)
-.++.+|+....++.+-.-| ...+||..+++...... .-....|.|| -.||+||++|.+.-
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytTEn 70 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTTEN 70 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEecc
Confidence 37888887766778887766 57799999998765311 0111235666 68999999999963
Q ss_pred ----CCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEE
Q 001336 401 ----SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 476 (1097)
Q Consensus 401 ----~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 476 (1097)
..|.|-|||...+ +.+..++..|.-.-..+.+.|||+. |+.+- |-|.- ..++|+....+..-
T Consensus 71 d~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~t--LvVAN--GGI~T-hpd~GR~kLNl~tM------- 136 (305)
T PF07433_consen 71 DYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGET--LVVAN--GGIET-HPDSGRAKLNLDTM------- 136 (305)
T ss_pred ccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCE--EEEEc--CCCcc-CcccCceecChhhc-------
Confidence 3578999999933 4555678778777888999999984 44442 11211 11233332222211
Q ss_pred eecccCCccEEEEEcCCCe-EEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCC---CceEEEEeCCCCee
Q 001336 477 CPHHKENIQFIFSTATDGK-IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG---ESYLVEWNESEGAV 552 (1097)
Q Consensus 477 ~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~---~~~i~~wd~~~~~~ 552 (1097)
.+ .+.+.-..+|. +.-|.+.. ..+...|+.+++.++|..++..-..++. ...|-+++.. +.
T Consensus 137 ----~p--sL~~ld~~sG~ll~q~~Lp~-------~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~ 201 (305)
T PF07433_consen 137 ----QP--SLVYLDARSGALLEQVELPP-------DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GA 201 (305)
T ss_pred ----CC--ceEEEecCCCceeeeeecCc-------cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--Cc
Confidence 11 12222122232 22222210 2344578899999999877776544331 2234444432 22
Q ss_pred eEEecCC------CCcceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEEC
Q 001336 553 KRTYHGL------GKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN 625 (1097)
Q Consensus 553 ~~~~~~~------~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~ 625 (1097)
+..+... -...+-+|+++.++..+++.+ ..+.+.+||..+++.+...... .+..++-.+++ ++++.+
T Consensus 202 ~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG- 275 (305)
T PF07433_consen 202 LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP----DACGVAPTDDG-FLVSSG- 275 (305)
T ss_pred ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC----ceeeeeecCCc-eEEeCC-
Confidence 3333221 113788999999999887777 7889999999999999887643 44566666665 555444
Q ss_pred CCc
Q 001336 626 DNG 628 (1097)
Q Consensus 626 dg~ 628 (1097)
.|.
T Consensus 276 ~G~ 278 (305)
T PF07433_consen 276 QGQ 278 (305)
T ss_pred Ccc
Confidence 344
No 294
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.75 E-value=5.6e-06 Score=93.44 Aligned_cols=197 Identities=11% Similarity=0.001 Sum_probs=123.4
Q ss_pred CeEEEEEccCCCE-EEEEECC---CEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCC--CcEEEEE
Q 001336 383 SVNRVMWSPDGTL-FGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED--RVIKVWD 456 (1097)
Q Consensus 383 ~V~~v~~spd~~~-las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d--~~i~iwd 456 (1097)
.+....|||||+. ++..+.+ ..|.++|+.+++... +....+.+....|+|||+. ++++.+.+ ..|.++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----lt~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----IASSQGMLVVSDVSKDGSK-LLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----EecCCCcEEeeEECCCCCE-EEEEEccCCCcEEEEEE
Confidence 7788999999985 6654443 478999998886432 3334555677889999986 34444444 4688889
Q ss_pred CCCCceeEEeecCCcCeEEEeecccCCccEEEEEc-CCC--eEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEee
Q 001336 457 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDG--KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG 533 (1097)
Q Consensus 457 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 533 (1097)
+.+++.. .+..+........| ++||+.|+..+ ..+ .|.+.|+++++...... .+.. ...|+|||+.++...
T Consensus 264 l~~g~~~-~LT~~~~~d~~p~~--SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 264 TNTKTLT-QITNYPGIDVNGNF--VEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NSSVSTYKNYIVYSS 337 (419)
T ss_pred CCCCcEE-EcccCCCccCccEE--CCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--CceECCCCCEEEEEE
Confidence 8777643 34434332233456 55666565544 334 56666776655432222 1211 248999999998887
Q ss_pred eCCC-----CCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCC---CcEEEEECCCC
Q 001336 534 TNKE-----GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE---FMIKFWDMDNV 593 (1097)
Q Consensus 534 ~~~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~ 593 (1097)
...+ +...|.+.|+.++.... +.... ......|+|||+.++..+.+ ..+.+.+++..
T Consensus 338 ~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~--~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 338 RETNNEFGKNTFNLYLISTNSDYIRR-LTANG--VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred cCCCcccCCCCcEEEEEECCCCCeEE-CCCCC--CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 5432 22578999998886543 33221 22357899999988776632 24666777543
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.73 E-value=1.3e-05 Score=79.95 Aligned_cols=247 Identities=10% Similarity=0.108 Sum_probs=137.5
Q ss_pred EEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCC
Q 001336 324 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 403 (1097)
Q Consensus 324 ~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg 403 (1097)
.++.++||+.| |+ -.|..|.|=..++.-.....++. +.+...-.=..++||||+.+||.+...|
T Consensus 2 ~~~~~~~Gk~l-Ai-~qd~~iEiRsa~Ddf~si~~kcq--------------VpkD~~PQWRkl~WSpD~tlLa~a~S~G 65 (282)
T PF15492_consen 2 HLALSSDGKLL-AI-LQDQCIEIRSAKDDFSSIIGKCQ--------------VPKDPNPQWRKLAWSPDCTLLAYAESTG 65 (282)
T ss_pred ceeecCCCcEE-EE-EeccEEEEEeccCCchheeEEEe--------------cCCCCCchheEEEECCCCcEEEEEcCCC
Confidence 46778899844 33 46677777766554322222221 2333444556799999999999999999
Q ss_pred EEEEEEccCCeeeeee--eeee-cccCcEEEEEEecCC-----CcEEEEEEeCCCcEEEEECCCC-----ceeEEee--c
Q 001336 404 IVHLYTYHGGDELRNH--LEIE-AHVGSVNDLAFSYPN-----KQLSVVTCGEDRVIKVWDAVTG-----TKQYIFE--G 468 (1097)
Q Consensus 404 ~i~iwd~~~~~~~~~~--~~l~-~h~~~V~~l~~s~d~-----~~~~l~s~s~d~~i~iwd~~~~-----~~~~~~~--~ 468 (1097)
+|+++|+......... .... .-...|..+.|.+-. .. -|+.-..+|.++-+-+..| +..+++. .
T Consensus 66 ~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~-ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~ 144 (282)
T PF15492_consen 66 TIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY-ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSS 144 (282)
T ss_pred eEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccce-eEEEEeccceeeeEEEEcccCCcceeeEEEEecc
Confidence 9999999865432210 0011 123567777776532 11 3666677787777765322 3334443 2
Q ss_pred -CCcCeEEEeecccCCccEEEEEcCCCe-EEEEEcCCCCceeeecCCCCceEEEEEccCCCEEE--EeeeCCCC--CceE
Q 001336 469 -HESPVYSICPHHKENIQFIFSTATDGK-IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF--SCGTNKEG--ESYL 542 (1097)
Q Consensus 469 -h~~~v~~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--~~~~~~~~--~~~i 542 (1097)
+...|.++.+++.. ++|+.||.... -..+ ......+++-.+-.+..+.. +...+.-. ..+.
T Consensus 145 ~yp~Gi~~~vy~p~h--~LLlVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~ 211 (282)
T PF15492_consen 145 HYPHGINSAVYHPKH--RLLLVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRR 211 (282)
T ss_pred cCCCceeEEEEcCCC--CEEEEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEEccccCcccccccccc
Confidence 46789999996654 56666653221 0000 01111222222211111111 11111000 0012
Q ss_pred EEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 001336 543 VEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 601 (1097)
Q Consensus 543 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 601 (1097)
.+|.+-+.+... ..+.....|..+..+|||..|++...+|.|.+|++.+-+.......
T Consensus 212 ~~~~~~~~~~fs-~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 212 GLLRIPSFKFFS-RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred ceeeccceeeee-ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 233322222111 1233345899999999999999999999999999998777766654
No 296
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.73 E-value=1.7e-06 Score=84.23 Aligned_cols=148 Identities=9% Similarity=-0.010 Sum_probs=107.2
Q ss_pred eEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001336 384 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ 463 (1097)
Q Consensus 384 V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~ 463 (1097)
+.++++|+|++++++.+....|..|.+................+.=.+..|+.... .++++..||++.|||++.-...
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence 88999999999999999999999999976544322223444555567889998888 7999999999999999865433
Q ss_pred E-----EeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCC--------CceEEEEEccCCCEEE
Q 001336 464 Y-----IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG--------HSSTMMAYSADGARLF 530 (1097)
Q Consensus 464 ~-----~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~ 530 (1097)
. +-..|.+.+..+.|++.+.-.+|+..-.-+.+.+.|+++......+.... ..|....|+.++..+.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence 2 22358899999999765444567766667899999999876544332221 1366666776666555
Q ss_pred Eee
Q 001336 531 SCG 533 (1097)
Q Consensus 531 ~~~ 533 (1097)
+..
T Consensus 319 v~~ 321 (344)
T KOG4532|consen 319 VKN 321 (344)
T ss_pred ccc
Confidence 543
No 297
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.73 E-value=1.6e-05 Score=83.92 Aligned_cols=218 Identities=19% Similarity=0.225 Sum_probs=140.8
Q ss_pred EEEEcc-CCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEe-cCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001336 386 RVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS-YPNKQLSVVTCGEDRVIKVWDAVTGTKQ 463 (1097)
Q Consensus 386 ~v~~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s-~d~~~~~l~s~s~d~~i~iwd~~~~~~~ 463 (1097)
+++|.+ ++.++++--..+.|..|+..+++... +... . ...+++. +++. ++.+..++ +.++|..+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~~~-~-~~G~~~~~~~g~---l~v~~~~~-~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----IDLP-G-PNGMAFDRPDGR---LYVADSGG-IAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EESS-S-EEEEEEECTTSE---EEEEETTC-EEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----EecC-C-CceEEEEccCCE---EEEEEcCc-eEEEecCCCcEE
Confidence 578888 66777776678999999999876432 2211 2 6677777 6654 55555544 455599988655
Q ss_pred EEeec-----CCcCeEEEeecccCCccEEEEEcCC--------CeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEE
Q 001336 464 YIFEG-----HESPVYSICPHHKENIQFIFSTATD--------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF 530 (1097)
Q Consensus 464 ~~~~~-----h~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 530 (1097)
..... .....+.+++ +++|.+.++.... |.|..++.+ .........-.....++|+|+++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~v--d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAV--DPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE---TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEE--cCCCCEEEEecCCCccccccccceEEECCC--CeEEEEecCcccccceEECCcchhee
Confidence 43332 3455778887 6667766665433 456666655 22222222334578999999999887
Q ss_pred EeeeCCCCCceEEEEeCCC--Cee--eEEe---cCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC
Q 001336 531 SCGTNKEGESYLVEWNESE--GAV--KRTY---HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG 603 (1097)
Q Consensus 531 ~~~~~~~~~~~i~~wd~~~--~~~--~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 603 (1097)
.+.. ....|..+++.. ... .+.+ .... .....+++..+|+..++....+.|.+++.+ |+.+..+...
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p- 223 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGP-GYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP- 223 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSS-CEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S-
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCC-cCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC-
Confidence 6543 345688888753 211 2222 2222 147789999999988888889999999988 9999988876
Q ss_pred CCCCcceEEEc-CCCCEEEEEE
Q 001336 604 GLQASPCIRFN-KEGILLAVST 624 (1097)
Q Consensus 604 ~~~~v~~v~~s-~~~~~l~s~~ 624 (1097)
...+++++|. ++...|+..+
T Consensus 224 -~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 224 -VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -SSSEEEEEEESTTSSEEEEEE
T ss_pred -CCCEEEEEEECCCCCEEEEEe
Confidence 3478899994 5666665543
No 298
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.70 E-value=4.3e-06 Score=81.52 Aligned_cols=240 Identities=12% Similarity=0.059 Sum_probs=153.3
Q ss_pred CCEEEEEe-CCeEEEEEcCCCce-eEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEeccccc--Ce
Q 001336 818 DSYVMSAS-GGKISLFNMMTFKT-MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQK--RI 893 (1097)
Q Consensus 818 g~~la~~s-dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~--~V 893 (1097)
-.+||.|+ .|...+|...+.+. .+....+...|+-+.-.-+...-+..++.|.++++.++..+..... .|.. .+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~--~h~~~~~~ 161 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA--VHNQNLTQ 161 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce--eeccccce
Confidence 34677776 89999999986543 3333334443332211111223466778899999998875433222 2333 37
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-EeCCeEEEEeCCCcc
Q 001336 894 TGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLE 972 (1097)
Q Consensus 894 ~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~~d~~v~vwd~~~~~ 972 (1097)
.++++++|++++++.+....|..|.++.......+.. ..... +.-.+..|+.....+|+ ..||++.|||+....
T Consensus 162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~---~a~t~--D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY---EAPTS--DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE---ecccC--CCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence 8899999999999999999999999987543332211 11111 34577889998888888 589999999998765
Q ss_pred eeeeee---ccCCCCCEEEEEEecCCCE--EEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCc-eeeEEEEEcCCC
Q 001336 973 CLKQFV---PREASGPITHATYSCDSQS--IYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLR-VYPLVIAGNPTD 1046 (1097)
Q Consensus 973 ~~~~~~---~~~h~~~v~~v~~s~dg~~--l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~-v~~l~i~~~p~~ 1046 (1097)
...... -..|.+.++.+.||+-|.+ |+..-.-+.+.|-|++++....++..+.-....|... ++.- .|+- +
T Consensus 237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt--~f~~-~ 313 (344)
T KOG4532|consen 237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGT--NFNN-E 313 (344)
T ss_pred cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccc--cccC-C
Confidence 433222 2358999999999986654 4444456889999999988766655333221223333 5544 3444 4
Q ss_pred CCEEEEEecCCcEEEEecCCCC
Q 001336 1047 PNQFALGLTDGGVYIIEPLEAE 1068 (1097)
Q Consensus 1047 ~~~l~s~~~Dg~v~~W~~~~~~ 1068 (1097)
++-..+.+++ .+.-|++.+..
T Consensus 314 n~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 314 NESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred Ccccccccch-hhheeeccccc
Confidence 4445545555 45677776544
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.70 E-value=3.2e-06 Score=89.09 Aligned_cols=224 Identities=15% Similarity=0.153 Sum_probs=139.6
Q ss_pred CCeEEEEEcCCCceeEEeCCC--CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCC
Q 001336 826 GGKISLFNMMTFKTMTTFMPP--PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLN 903 (1097)
Q Consensus 826 dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 903 (1097)
+|+|..||..+|+.+...... .....+..+. ++..+++++.++.++.||..+|+.+.+... .+++.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 578999999999998887531 1223322332 355777778999999999999998877664 22222112 22355
Q ss_pred EEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEEEEeCCCcceeeeeeccCC
Q 001336 904 VLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPREA 982 (1097)
Q Consensus 904 ~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h 982 (1097)
.++.++.|+.|..+|..+++..-.......... ..........++..++++ .++.|..+|..+|+.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeecccccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 667777888999999988874221111110100 111222233336666665 589999999999999887764221
Q ss_pred C--C------CEEEEEEecCCCEEEEEecCCe-EEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEE
Q 001336 983 S--G------PITHATYSCDSQSIYVAFEEGS-VGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALG 1053 (1097)
Q Consensus 983 ~--~------~v~~v~~s~dg~~l~s~s~Dg~-v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~ 1053 (1097)
. . .+..-....++ .+..++.++. +.+ |+.+++.+.... .. .+..+ ... ++..++.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~--------~~~~~---~~~-~~~~l~~~ 218 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-IS--------GIYSL---PSV-DGGTLYVT 218 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS---------ECEC---EEC-CCTEEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CC--------CccCC---cee-eCCEEEEE
Confidence 1 1 12233333355 6666777775 556 999998654322 11 12221 123 56778888
Q ss_pred ecCCcEEEEecCCCCcccC
Q 001336 1054 LTDGGVYIIEPLEAEGRWG 1072 (1097)
Q Consensus 1054 ~~Dg~v~~W~~~~~~~~~~ 1072 (1097)
+.|+.|..||+.+++..|.
T Consensus 219 ~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 219 SSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ETTTEEEEEETTTTEEEEE
T ss_pred eCCCEEEEEECCCCCEEeE
Confidence 8999999999999998885
No 300
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.68 E-value=4.4e-07 Score=89.83 Aligned_cols=249 Identities=15% Similarity=0.233 Sum_probs=163.5
Q ss_pred CCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCe--eeeeeeeeeccc------------CcEEEEEEecCCCcEEEEE
Q 001336 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD--ELRNHLEIEAHV------------GSVNDLAFSYPNKQLSVVT 445 (1097)
Q Consensus 380 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~--~~~~~~~l~~h~------------~~V~~l~~s~d~~~~~l~s 445 (1097)
....|+++.|...|.|||+|...|.|.+|.-.... +.+-+..+++|. ..|..+.|..++....++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999765432 122222356664 3588899988776657888
Q ss_pred EeCCCcEEEEECCCCce-------------------e-----------------------EEe-ecCCcCeEEEeecccC
Q 001336 446 CGEDRVIKVWDAVTGTK-------------------Q-----------------------YIF-EGHESPVYSICPHHKE 482 (1097)
Q Consensus 446 ~s~d~~i~iwd~~~~~~-------------------~-----------------------~~~-~~h~~~v~~~~~~~~~ 482 (1097)
.+.|.+|++|.+..... + +.. ..|...|+++.+ ..
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~--Ns 182 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF--NS 182 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee--cC
Confidence 88999999998754310 0 011 245666777777 45
Q ss_pred CccEEEEEcCCCeEEEEEcCCCCceee---ecCCC-----CceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeee-
Q 001336 483 NIQFIFSTATDGKIKAWLYDNLGSRVD---YDAPG-----HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK- 553 (1097)
Q Consensus 483 ~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~-----~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~- 553 (1097)
|.+.++++ .|=.|.+|+++....... +..+. .-|++..|+|....+..-+.+ .+.|++-|++...+.
T Consensus 183 D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS---kG~Ikl~DlRq~alcd 258 (460)
T COG5170 183 DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS---KGEIKLNDLRQSALCD 258 (460)
T ss_pred chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC---CCcEEehhhhhhhhcc
Confidence 54566654 578899998875443322 22222 157888899966544433322 446999998843211
Q ss_pred ---E----EecCC-------CCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEecCCC----------CCCc
Q 001336 554 ---R----TYHGL-------GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDADGG----------LQAS 608 (1097)
Q Consensus 554 ---~----~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~----------~~~v 608 (1097)
. .+.+. -...|..+.|+++|+++++-+. -+|++||.+. ..++.++..|.. ...|
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDai 337 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI 337 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccce
Confidence 0 11111 0125677899999988887764 6899999985 456776654321 1122
Q ss_pred ---ceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001336 609 ---PCIRFNKEGILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 609 ---~~v~~s~~~~~l~s~~~dg~i~iw~~~ 635 (1097)
..+.|+-|...+.+|+..+...|+-..
T Consensus 338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeEEEEecCCcccccccccccceeeeccc
Confidence 257788888999999998888888643
No 301
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.67 E-value=1.6e-05 Score=90.51 Aligned_cols=307 Identities=11% Similarity=0.076 Sum_probs=167.7
Q ss_pred cEEEEEcCCCeEEEEEcCCCCceeeecCCCC----------ce-EEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeee
Q 001336 485 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGH----------SS-TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 553 (1097)
Q Consensus 485 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~v-~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 553 (1097)
..++.++.++.+.-+|.++++.......... .+ ..+.. ++..++.++. ++.+..+|.++|+.+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~----~g~l~ald~~tG~~~ 143 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSE----KGQVYALNAEDGEVA 143 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcC----CCEEEEEECCCCCCc
Confidence 4566677777777777777777666544321 00 00111 3445555543 346999999999887
Q ss_pred EEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCC---cceEEEcCCCCEEEEEECCCcEE
Q 001336 554 RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQA---SPCIRFNKEGILLAVSTNDNGIK 630 (1097)
Q Consensus 554 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~v~~s~~~~~l~s~~~dg~i~ 630 (1097)
-+...... ....... .+..++.+..++.|+.+|..+|+.+........... ...... .+..++.++.+|.+.
T Consensus 144 W~~~~~~~-~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~ 218 (394)
T PRK11138 144 WQTKVAGE-ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVS 218 (394)
T ss_pred ccccCCCc-eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEE
Confidence 76654322 1111122 245677788899999999999999887764311000 011111 134567778888998
Q ss_pred EEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCccccccc
Q 001336 631 ILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEA 710 (1097)
Q Consensus 631 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1097)
.++..+|.... ........ + ..
T Consensus 219 a~d~~~G~~~W-~~~~~~~~---------------------------------------------------~------~~ 240 (394)
T PRK11138 219 AVLMEQGQLIW-QQRISQPT---------------------------------------------------G------AT 240 (394)
T ss_pred EEEccCChhhh-eeccccCC---------------------------------------------------C------cc
Confidence 88888873221 11100000 0 00
Q ss_pred ccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCC
Q 001336 711 VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP 790 (1097)
Q Consensus 711 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~ 790 (1097)
..-+++++ ...++ + .+..+++++.+|.+..+|..+++ .+|..
T Consensus 241 -~~~~~~~~------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~-------------~~W~~ 282 (394)
T PRK11138 241 -EIDRLVDV------------------DTTPV----V--VGGVVYALAYNGNLVALDLRSGQ-------------IVWKR 282 (394)
T ss_pred -chhccccc------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCCCC-------------EEEee
Confidence 00000000 00011 0 13345555666777666554321 13332
Q ss_pred CCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCC-CCeEEEEEeCCCCCEEEEEEC
Q 001336 791 PSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIGME 868 (1097)
Q Consensus 791 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~~la~g~~ 868 (1097)
..+ . ...+.. ++..+..++ +|.+..+|..+++.+....... ....+..+. + .+|+.++.
T Consensus 283 ~~~-----------~---~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~ 343 (394)
T PRK11138 283 EYG-----------S---VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N-GYLVVGDS 343 (394)
T ss_pred cCC-----------C---ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C-CEEEEEeC
Confidence 211 0 011222 344444454 8999999999988765443211 223333333 3 46778899
Q ss_pred CCcEEEEEcccceEEEEecccccCeEE-EEEecCCCEEEEEeCCCcEEEEEc
Q 001336 869 DSSIQIYNVRVDEVKTKLKGHQKRITG-LAFSNTLNVLVSSGADSQLCVWST 919 (1097)
Q Consensus 869 dg~v~vwd~~~~~~~~~l~~h~~~V~~-l~~s~dg~~l~s~~~Dg~i~iwd~ 919 (1097)
||.++++|..+|+.+.+.+.....+.+ ..+ .+..|+.++.||.|+.++.
T Consensus 344 ~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 344 EGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 999999999999988776644333332 222 2457888899998887764
No 302
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.66 E-value=2.9e-07 Score=91.10 Aligned_cols=119 Identities=15% Similarity=0.274 Sum_probs=87.2
Q ss_pred CCCCCeeEEEEccCCCEEEEEeCCeEEEEEcCCCc---eeEEeCCCCC-----CeEEEEEeCCCCCEEEEEECCCcEEEE
Q 001336 804 NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFK---TMTTFMPPPP-----AATFLAFHPQDNNIIAIGMEDSSIQIY 875 (1097)
Q Consensus 804 ~h~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~---~~~~~~~~~~-----~i~~l~~sp~~~~~la~g~~dg~v~vw 875 (1097)
.|...|.++.|..|...++++.|=.|.+|++.-.. .+..+++|.- -|++..|+|.....+...+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 48888999999999999999999999999985432 2333455542 389999999777888899999999999
Q ss_pred EcccceE------EE--E--------ecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc
Q 001336 876 NVRVDEV------KT--K--------LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 923 (1097)
Q Consensus 876 d~~~~~~------~~--~--------l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~ 923 (1097)
|++...+ +. . +.+-...|..+.|+++|+++++-+. -+|++||+...+
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 9873210 10 0 1122355777888888888887654 458888887643
No 303
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.66 E-value=3e-05 Score=88.20 Aligned_cols=210 Identities=12% Similarity=0.031 Sum_probs=121.0
Q ss_pred CCeEEEEEcCCCceeEEeCCCCCC-----eEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEeccccc-------Ce
Q 001336 826 GGKISLFNMMTFKTMTTFMPPPPA-----ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQK-------RI 893 (1097)
Q Consensus 826 dg~i~iwd~~~~~~~~~~~~~~~~-----i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~-------~V 893 (1097)
++.|.-+|.++|+.+......... ....... ++ .++.++.+|.+..+|..+|+.+........ ..
T Consensus 169 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 169 NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence 666777777777766655432111 0111222 22 466677889999999998886654321100 01
Q ss_pred EEEEEec--CCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCc
Q 001336 894 TGLAFSN--TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKL 971 (1097)
Q Consensus 894 ~~l~~s~--dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~ 971 (1097)
..+.-+| .+..++.++.+|.+.-+|..+++.. + ....+. ...+.. .++...+.+.++.+..+|..+|
T Consensus 246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~-W---~~~~~~------~~~~~~-~~~~vy~~~~~g~l~ald~~tG 314 (394)
T PRK11138 246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV-W---KREYGS------VNDFAV-DGGRIYLVDQNDRVYALDTRGG 314 (394)
T ss_pred cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE-E---eecCCC------ccCcEE-ECCEEEEEcCCCeEEEEECCCC
Confidence 1111122 2456777788999999999987632 1 111111 111222 2344444467899999999998
Q ss_pred ceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCcee-eEEEEEcCCCCCEE
Q 001336 972 ECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVY-PLVIAGNPTDPNQF 1050 (1097)
Q Consensus 972 ~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~-~l~i~~~p~~~~~l 1050 (1097)
+.+-......+ ....+... .+.+|+.++.||.+.+.|..+|+.+.+..... ..+. +..+. +..|
T Consensus 315 ~~~W~~~~~~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~-------~~~~s~P~~~-----~~~l 379 (394)
T PRK11138 315 VELWSQSDLLH-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS-------SGFLSEPVVA-----DDKL 379 (394)
T ss_pred cEEEcccccCC-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC-------CcceeCCEEE-----CCEE
Confidence 76543321111 11222222 24567788999999999999999887765321 1111 11122 4578
Q ss_pred EEEecCCcEEEEec
Q 001336 1051 ALGLTDGGVYIIEP 1064 (1097)
Q Consensus 1051 ~s~~~Dg~v~~W~~ 1064 (1097)
+.++.||.|+.+++
T Consensus 380 ~v~t~~G~l~~~~~ 393 (394)
T PRK11138 380 LIQARDGTVYAITR 393 (394)
T ss_pred EEEeCCceEEEEeC
Confidence 88999999998875
No 304
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.65 E-value=4.2e-07 Score=88.07 Aligned_cols=209 Identities=14% Similarity=0.231 Sum_probs=125.0
Q ss_pred eeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEEC
Q 001336 322 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS 401 (1097)
Q Consensus 322 V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~ 401 (1097)
|+.+.|+-+ ++|++|..++.+......++.+.. .|+......++ ..+..|+..-.+-+.+-.++.+++++.
T Consensus 39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~--~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPF--KVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhh--heeecccchhheeeeccceEEEec-----hhhcccCcCce--eeeeccCCCCCcccccccCCceEecCC
Confidence 666666655 457888888887777766554432 22222111111 123344444444455556788999999
Q ss_pred CCEEEEEEccCCeeeeeeeeee-cccCcEEEEEEecCCCcEEEEEEe-----CCCcEEEEECCCCceeEEeecCCcCeEE
Q 001336 402 KHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCG-----EDRVIKVWDAVTGTKQYIFEGHESPVYS 475 (1097)
Q Consensus 402 dg~i~iwd~~~~~~~~~~~~l~-~h~~~V~~l~~s~d~~~~~l~s~s-----~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 475 (1097)
||.+.+.+.+.- ++....+. .|.+. .+.+....+. .+.++. .-+..++|+++..+.+..-..-...|.+
T Consensus 110 dg~~~v~s~~~~--~~~~~~i~~~~~~~-as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKD--LALMSRIPSIHSGS-ASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHH--Hhhhhhcccccccc-cccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 999999998762 22111111 12221 1222333344 333322 1234556665543322222222344888
Q ss_pred EeecccCCccEEEEEcCCCeEEEEEcCCCCcee-eecCCCCceEEEEEcc-CCCEEEEeeeCCCCCceEEEEeCCC
Q 001336 476 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV-DYDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNESE 549 (1097)
Q Consensus 476 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~ 549 (1097)
++-+|... +.+++|+.||.+-+||+++..... .+..|..++..+.|+| ++..|++++.++ .++.||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedG----slw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDG----SLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCC----cEEEEcCCC
Confidence 98877665 688999999999999999874433 3556777999999998 567888888655 499998664
No 305
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.63 E-value=6.2e-05 Score=78.78 Aligned_cols=204 Identities=15% Similarity=0.166 Sum_probs=130.7
Q ss_pred EEEccCCCEEEEEe---CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcc-cceEEEEe-
Q 001336 812 FALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVR-VDEVKTKL- 886 (1097)
Q Consensus 812 l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~-~~~~~~~l- 886 (1097)
+++|.||+++.+.. ...|.|-|+...+.+.++.. ..+..+--+ .++-+.+-|.||.+....+. .|+...+.
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PGC~~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t 175 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PGCWLIYPS--GNRGFSMLCGDGSLLTVTLDADGKEAQKST 175 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TSEEEEEEE--ETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CCEEEEEec--CCCceEEEecCCceEEEEECCCCCEeEeec
Confidence 56777888777765 36689999999888887752 233333223 34567788899999999987 45544221
Q ss_pred ---cccccCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCC---CCC-ccCCeEEEEcCCCcEEEEE
Q 001336 887 ---KGHQKRIT-GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGR---TAS-ALADTRVQFHLDQTHLLAV 958 (1097)
Q Consensus 887 ---~~h~~~V~-~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~-~~~v~~l~~s~dg~~l~~~ 958 (1097)
..-..++. .-+++..+..++-.+.+|.|+--|+............+.... ..+ .+.-..+++++....|.+-
T Consensus 176 ~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvL 255 (342)
T PF06433_consen 176 KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVL 255 (342)
T ss_dssp EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEE
T ss_pred cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEE
Confidence 11222232 344555666666678899999888887664433333322111 111 1556778998877666652
Q ss_pred ----eCC-------eEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCC-EEEEEe-cCCeEEEEeCCCCceeeeeC
Q 001336 959 ----HET-------QIAIYEAPKLECLKQFVPREASGPITHATYSCDSQ-SIYVAF-EEGSVGVLTASTLRLRCRIN 1022 (1097)
Q Consensus 959 ----~d~-------~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~s-~Dg~v~vwd~~~~~~~~~~~ 1022 (1097)
.++ .|.+||+.+++.+..+... .++.+++.|.|.+ +|++.+ .++.+.|||..+|+++.++.
T Consensus 256 Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 256 MHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred ecCCCCCCccCCceEEEEEECCCCeEEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 222 4999999999999999863 4688999999888 454444 57999999999999998877
No 306
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.60 E-value=9.4e-07 Score=97.54 Aligned_cols=294 Identities=11% Similarity=0.159 Sum_probs=182.6
Q ss_pred EEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCC--CCCeEEEEEcc
Q 001336 314 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDY--TASVNRVMWSP 391 (1097)
Q Consensus 314 ~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~v~~sp 391 (1097)
..+.-.+.+.++..+|.|+.+ |.++.-| +.|-|+...-.... .-.| .-.|..+.|||
T Consensus 19 lsl~v~~~~~a~si~p~grdi-~lAsr~g-l~i~dld~p~~ppr-------------------~l~h~tpw~vad~qws~ 77 (1081)
T KOG0309|consen 19 LSLKVDGGFNAVSINPSGRDI-VLASRQG-LYIIDLDDPFTPPR-------------------WLHHITPWQVADVQWSP 77 (1081)
T ss_pred eEEEecCcccceeeccccchh-hhhhhcC-eEEEeccCCCCCce-------------------eeeccCcchhcceeccc
Confidence 345567788999999999976 5555544 44445543211110 0011 12466677877
Q ss_pred CC--CEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEeec
Q 001336 392 DG--TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEG 468 (1097)
Q Consensus 392 d~--~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~ 468 (1097)
.. .+-++......-.+|++.....-.....+.||...|+.+.|.|.... .+++++.|-.+..||+++. ..+..+..
T Consensus 78 h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~ 156 (1081)
T KOG0309|consen 78 HPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSS 156 (1081)
T ss_pred CCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeec
Confidence 42 34444445555689998654333333357899999999999998876 7999999999999999876 44555554
Q ss_pred CCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCcee-eecCCCCceEEEEEccC-CCEEEEeeeCCCCCceEEEEe
Q 001336 469 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV-DYDAPGHSSTMMAYSAD-GARLFSCGTNKEGESYLVEWN 546 (1097)
Q Consensus 469 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd 546 (1097)
-...-..++|+... ..+.+.+..+.|++||.+.+.... .+..+...|..+.|..- ...+.+++. +++|..||
T Consensus 157 w~s~asqVkwnyk~--p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~----d~tvkfw~ 230 (1081)
T KOG0309|consen 157 WRSAASQVKWNYKD--PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN----DGTVKFWD 230 (1081)
T ss_pred ccccCceeeecccC--cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCC----CCceeeec
Confidence 44455667776433 235555667889999998766544 45555556777777542 234455443 55799999
Q ss_pred CCCCeeeEEecCCCCcceEEEEEcCCCCEEEEE--eCCCcEEEEEC---------CC-CceEEEEecCCCCCCcceEEEc
Q 001336 547 ESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAA--GDEFMIKFWDM---------DN-VNLLASIDADGGLQASPCIRFN 614 (1097)
Q Consensus 547 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~---------~~-~~~~~~~~~~~~~~~v~~v~~s 614 (1097)
..+.............++..-++.|-|.-.++- -.+..+.+++. .+ .++++.+.+| ...|....|-
T Consensus 231 y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH--~D~V~eFlWR 308 (1081)
T KOG0309|consen 231 YSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGH--DDVVLEFLWR 308 (1081)
T ss_pred ccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCc--chHHHHHhhh
Confidence 876543333333333466666676765433321 12224444433 22 3567777755 5556554443
Q ss_pred CC----------CCEEEEEECCCcEEEEEcCCC
Q 001336 615 KE----------GILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 615 ~~----------~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
.. .-.|++=+.|.++++|-+.+.
T Consensus 309 ~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 309 KRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred hcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 21 237899999999999988653
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.58 E-value=0.0002 Score=75.57 Aligned_cols=220 Identities=17% Similarity=0.126 Sum_probs=143.6
Q ss_pred EEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEc-cCCCEEEEEECC
Q 001336 324 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS-PDGTLFGVAYSK 402 (1097)
Q Consensus 324 ~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-pd~~~las~~~d 402 (1097)
++.|.+....|+.+.-..+.|..|+..+++.... ... ....+++. +++ .|+.+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~~~--~~~G~~~~~~~g-~l~v~~~~ 60 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------DLP--GPNGMAFDRPDG-RLYVADSG 60 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------ESS--SEEEEEEECTTS-EEEEEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------ecC--CCceEEEEccCC-EEEEEEcC
Confidence 6789985556778888889999999998865431 111 27777887 564 55555565
Q ss_pred CEEEEEEccCCeeeeeeeeee--c-ccCcEEEEEEecCCCcEEEEEEeCC--------CcEEEEECCCCceeEEeecCCc
Q 001336 403 HIVHLYTYHGGDELRNHLEIE--A-HVGSVNDLAFSYPNKQLSVVTCGED--------RVIKVWDAVTGTKQYIFEGHES 471 (1097)
Q Consensus 403 g~i~iwd~~~~~~~~~~~~l~--~-h~~~V~~l~~s~d~~~~~l~s~s~d--------~~i~iwd~~~~~~~~~~~~h~~ 471 (1097)
+ +.++|..+++. ....... . .....+.+++.++|. +.++.... +.|..++.. ++...... .-.
T Consensus 61 ~-~~~~d~~~g~~-~~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~ 134 (246)
T PF08450_consen 61 G-IAVVDPDTGKV-TVLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLG 134 (246)
T ss_dssp C-EEEEETTTTEE-EEEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EES
T ss_pred c-eEEEecCCCcE-EEEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Ccc
Confidence 5 45559988863 3333332 2 345689999999999 56665543 457777866 55444333 345
Q ss_pred CeEEEeecccCCccEE-EEEcCCCeEEEEEcCCCCc-----eeeecCCC--CceEEEEEccCCCEEEEeeeCCCCCceEE
Q 001336 472 PVYSICPHHKENIQFI-FSTATDGKIKAWLYDNLGS-----RVDYDAPG--HSSTMMAYSADGARLFSCGTNKEGESYLV 543 (1097)
Q Consensus 472 ~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~-----~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 543 (1097)
..+.++|+ ++++.| ++-+..+.|..++++.... ........ ...-.+++..+|+..++... ...|.
T Consensus 135 ~pNGi~~s--~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I~ 208 (246)
T PF08450_consen 135 FPNGIAFS--PDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRIV 208 (246)
T ss_dssp SEEEEEEE--TTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEEE
T ss_pred cccceEEC--CcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEEE
Confidence 56889985 455655 5677889999999875443 11122222 24788999999987776542 44799
Q ss_pred EEeCCCCeeeEEecCCCCcceEEEEE-cCCCCEEEEEe
Q 001336 544 EWNESEGAVKRTYHGLGKRSVGVVQF-DTTKNRFLAAG 580 (1097)
Q Consensus 544 ~wd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~ 580 (1097)
++|.. |+.+..+..... .+++++| .++.+.|+..+
T Consensus 209 ~~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEEE
T ss_pred EECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEEe
Confidence 99988 888888877644 7889999 46666666544
No 308
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.56 E-value=7.7e-08 Score=107.74 Aligned_cols=255 Identities=14% Similarity=0.111 Sum_probs=171.3
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
|....+|++||-+.++ |++|+..|.|+++++.+|..... ...|.++|+.+.=|.||..++
T Consensus 1100 ~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~dgs~~L 1159 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSVDGSTQL 1159 (1516)
T ss_pred cccceeeEEeecCCce-EEeeeccceEEEEEccCcccccc-------------------ccccccccccccccCCcceee
Confidence 6788999999999986 58999999999999999987654 678999999999999999887
Q ss_pred EEECCC--EEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEe-ec---CCc
Q 001336 398 VAYSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EG---HES 471 (1097)
Q Consensus 398 s~~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~---h~~ 471 (1097)
+.+.-. -..+|++.+- .....++. .-.++.|+....+ -+.|..-..+.+||++++..+.++ .+ ...
T Consensus 1160 tsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~--r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y 1231 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF--RALGTEADDALLYDVQTCSPLQTYLTDTVTSSY 1231 (1516)
T ss_pred eeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH--HHhcccccceEEEecccCcHHHHhcCcchhhhh
Confidence 765543 3679998752 22222232 3467889876553 334444457899999999887763 22 122
Q ss_pred CeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCe
Q 001336 472 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 551 (1097)
Q Consensus 472 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 551 (1097)
.-++..|+ |+..+++ .||. +||.+..+.+..+..-... -.-.|+|.|..++..+ .+||+++.+
T Consensus 1232 ~~n~a~Fs--P~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS---------EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1232 SNNLAHFS--PCDTLIL---NDGV--LWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS---------EIWDMRTFK 1294 (1516)
T ss_pred hccccccC--CCcceEe---eCce--eeeeccHHHHhhhhhheec-ccccccCCCceEEeec---------hhhhhHHHH
Confidence 22455564 4434554 3454 8999877655554332211 1235899999998864 589999999
Q ss_pred eeEEecCCCCcceEEEEEcCCCCEEEEEe--CC---------------CcEEEEECCCCceEEEEecCCCCCCcceEEEc
Q 001336 552 VKRTYHGLGKRSVGVVQFDTTKNRFLAAG--DE---------------FMIKFWDMDNVNLLASIDADGGLQASPCIRFN 614 (1097)
Q Consensus 552 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 614 (1097)
.++....-.+ ..+.|+..|+.++..- .| ...+-++....+.+.++.. ...+..++-.
T Consensus 1295 lLh~VP~Ldq---c~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v---~R~~~Dlct~ 1368 (1516)
T KOG1832|consen 1295 LLHSVPSLDQ---CAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV---DRCLLDLCTE 1368 (1516)
T ss_pred HHhcCccccc---eEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec---ccchhhhhcC
Confidence 8887776544 5678888887666543 11 1244455555666666654 2345566666
Q ss_pred CCCCEEEEE
Q 001336 615 KEGILLAVS 623 (1097)
Q Consensus 615 ~~~~~l~s~ 623 (1097)
|...++++-
T Consensus 1369 ~~D~~l~vI 1377 (1516)
T KOG1832|consen 1369 PTDSFLGVI 1377 (1516)
T ss_pred CccceEEEE
Confidence 666666554
No 309
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.56 E-value=1e-07 Score=90.89 Aligned_cols=133 Identities=21% Similarity=0.233 Sum_probs=99.1
Q ss_pred hhhhhhhcccChHHHHHHhccccccCCccccceeeehhhHhhhhHHHhcCChhHHHHHHHhccccccccChHHHHHHHHh
Q 001336 2 RYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQL 81 (1097)
Q Consensus 2 ~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~E~l~~~~~~~a~~~l~~~l~~l~~~~~~~~~~l~~l 81 (1097)
..++++|++||+++|+..+....+.-...... +.|.|++|+|+|+|..++..+|+.+.|+.|.|......+.++++..|
T Consensus 6 ~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~-L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~l 84 (145)
T PF10607_consen 6 KKIRQAILNGDIDPAIEWLNENFPELLKRNSS-LEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMSL 84 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCc-hhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 46889999999999999998874322222223 89999999999999999999999999999987744467788899999
Q ss_pred hccccccc--hhhhhccCCchHHHHHHHHHHHhhcccCcCcccccCCCCCc-hhHHHHHHhhchhhh
Q 001336 82 LTLENFRD--NEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLK-NSRLRTLINQSLNWQ 145 (1097)
Q Consensus 82 l~~~~~~~--~~~~~~~~~~~~~r~~l~~~~~~~i~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q 145 (1097)
|.+.+..+ ...+..+-+ ...|..|.+.+.+.+-...- +| ...|+.++++....+
T Consensus 85 L~~~~~~~~~~s~~~~l~~-~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 85 LAYPDPEEPLPSPYKELLS-PERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHcCCcccccchHHHHHhC-hHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 98877654 223332323 36678999999987755332 33 567888888775543
No 310
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.54 E-value=2.8e-07 Score=92.81 Aligned_cols=164 Identities=15% Similarity=0.086 Sum_probs=122.3
Q ss_pred EEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCCEE
Q 001336 326 DFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIV 405 (1097)
Q Consensus 326 ~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i 405 (1097)
+||-+-.-.-++.+.+-.|-+-|+++|.... + .-.+.|.++.|.-.++++..|.++|.|
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRngeI 276 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRNGEI 276 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccCCcE
Confidence 6664322222344556678899998886543 2 256789999999999999999999999
Q ss_pred EEEEccCCee--eeeeeeeecccCcEEEEEEec-CCCcEEEEEEeCCCcEEEEECCCCce---eEEeecCCcCeEEEeec
Q 001336 406 HLYTYHGGDE--LRNHLEIEAHVGSVNDLAFSY-PNKQLSVVTCGEDRVIKVWDAVTGTK---QYIFEGHESPVYSICPH 479 (1097)
Q Consensus 406 ~iwd~~~~~~--~~~~~~l~~h~~~V~~l~~s~-d~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~h~~~v~~~~~~ 479 (1097)
...|++.+.. ..+.. ---|...|+++.... +++ +|++.+.+|.|++||.+--++ +.++.||-+.-.-+-++
T Consensus 277 ~~iDLR~rnqG~~~~a~-rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~ 353 (425)
T KOG2695|consen 277 FVIDLRCRNQGNGWCAQ-RLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAH 353 (425)
T ss_pred EEEEeeecccCCCcceE-EEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccccccc
Confidence 9999986511 01111 224899999998877 555 799999999999999986666 88999997766556555
Q ss_pred ccCCccEEEEEcCCCeEEEEEcCCCCceeeecCC
Q 001336 480 HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP 513 (1097)
Q Consensus 480 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 513 (1097)
-.+....++++++|-..|||.++.+.....+...
T Consensus 354 v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 354 VKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 5666678999999999999999987766655443
No 311
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.7e-06 Score=88.87 Aligned_cols=256 Identities=14% Similarity=0.076 Sum_probs=173.8
Q ss_pred CCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeC-CCcEEEEEC
Q 001336 379 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DRVIKVWDA 457 (1097)
Q Consensus 379 ~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~-d~~i~iwd~ 457 (1097)
-|.+.|+.+.-+ -.+++.+++.||.++.|.-..-.-+.-...+..|...|.+++.+.++- ++.|.+. |..++++|+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEe
Confidence 488888877654 567999999999999997654222332334667999999999999998 7888777 999999999
Q ss_pred CCCceeEEeec--CCcCeEEEeecccCCc--cEEEEEcCCCeEEEEEcCCCCcee--eecCCCCceEEEEEccCCCEEEE
Q 001336 458 VTGTKQYIFEG--HESPVYSICPHHKENI--QFIFSTATDGKIKAWLYDNLGSRV--DYDAPGHSSTMMAYSADGARLFS 531 (1097)
Q Consensus 458 ~~~~~~~~~~~--h~~~v~~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~ 531 (1097)
++-..+..++- -.+.+..+ ...++- ..-++.-.++.+.++|-....+.. ....|..+|..+.+.+-+..+++
T Consensus 84 En~DminmiKL~~lPg~a~wv--~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEWV--TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred eccchhhhcccccCCCceEEe--cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence 87655533221 11222221 111111 223344567899999876655433 33456779999999999998888
Q ss_pred eeeCCCCCceEEEEeCCC------CeeeEEecCC--------CCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 001336 532 CGTNKEGESYLVEWNESE------GAVKRTYHGL--------GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA 597 (1097)
Q Consensus 532 ~~~~~~~~~~i~~wd~~~------~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 597 (1097)
.-. .+.|.-|.... .++...++.. ......++.|+|++..+.+-+.|..|++++..+|++++
T Consensus 162 iD~----~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 162 IDI----SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ccc----cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 643 45799998773 1111111110 11256789999999999999999999999999998776
Q ss_pred EEecCC-------------------------------CCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEec
Q 001336 598 SIDADG-------------------------------GLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVE 645 (1097)
Q Consensus 598 ~~~~~~-------------------------------~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 645 (1097)
.+.... +...-..+.|...+++|..|+-=| |++.++.++ +..+.+-
T Consensus 238 eiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn-~v~ri~g 314 (558)
T KOG0882|consen 238 EIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTN-TVVRILG 314 (558)
T ss_pred hhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecC-eEEEEec
Confidence 543110 011224567888888888887664 788999888 6666553
No 312
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.1e-06 Score=89.74 Aligned_cols=298 Identities=14% Similarity=0.153 Sum_probs=191.8
Q ss_pred CccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccC
Q 001336 738 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 817 (1097)
Q Consensus 738 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 817 (1097)
|...|+.+..+ -.+++++++-||.++.|.-.. .+|......+. .|-..|.+++.+-|
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~--------------------isGvEfVKhFr--aHL~~I~sl~~S~d 64 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSR--------------------ISGVEFVKHFR--AHLGVILSLAVSYD 64 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCC--------------------ccceeehhhhH--HHHHHHHhhhcccc
Confidence 55555555433 567899999999999994321 01211111122 27788899999999
Q ss_pred CCEEEEEe--CCeEEEEEcCCCceeEEeCCCCC-CeEEEEEeCCCC-CEEE-EEECCCcEEEEEcccc--eEEEEecccc
Q 001336 818 DSYVMSAS--GGKISLFNMMTFKTMTTFMPPPP-AATFLAFHPQDN-NIIA-IGMEDSSIQIYNVRVD--EVKTKLKGHQ 890 (1097)
Q Consensus 818 g~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~~~-~~la-~g~~dg~v~vwd~~~~--~~~~~l~~h~ 890 (1097)
|.++++.+ |..++++|+.+...+.-++...- .-.+...++.+. ..|| +.-.+|.+.|+|-... +....-.-|.
T Consensus 65 g~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~ 144 (558)
T KOG0882|consen 65 GWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHF 144 (558)
T ss_pred ceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccccc
Confidence 99999966 78899999988766544432221 122223333111 1333 3446789999996543 3344445699
Q ss_pred cCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceee-Eee-------cCCCCCCccCCeEEEEcCCCcEEEE-EeCC
Q 001336 891 KRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKF-LTI-------PNGRTASALADTRVQFHLDQTHLLA-VHET 961 (1097)
Q Consensus 891 ~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~-~~~-------~~~~~~~~~~v~~l~~s~dg~~l~~-~~d~ 961 (1097)
.+|..+.+++-+..+++....|.|.-|..+. ..+..+. +.. .-+.........++.|+|+|..+.+ +.|.
T Consensus 145 sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr 223 (558)
T KOG0882|consen 145 SPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR 223 (558)
T ss_pred CceEEEEeeccccceeeccccceeEeecCCC-cccCccccccccccccchhhcccccccCccceEEccccCcccccCccc
Confidence 9999999999999999999999999999874 1110000 000 0011111245789999999999998 7899
Q ss_pred eEEEEeCCCcceeeeeec------------------------------cCC-CCCEEEEEEecCCCEEEEEecCCeEEEE
Q 001336 962 QIAIYEAPKLECLKQFVP------------------------------REA-SGPITHATYSCDSQSIYVAFEEGSVGVL 1010 (1097)
Q Consensus 962 ~v~vwd~~~~~~~~~~~~------------------------------~~h-~~~v~~v~~s~dg~~l~s~s~Dg~v~vw 1010 (1097)
.|++++..+|+.+..+.. ..| ...-+.+.|...|.+|+.++-=| |+|.
T Consensus 224 kVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvi 302 (558)
T KOG0882|consen 224 KVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVI 302 (558)
T ss_pred EEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEE
Confidence 999999999876654321 112 23446788999999999888766 8999
Q ss_pred eCCCCceeeeeCCCCcC-------CCC----C------CCceeeEEEEEcCCCCCEEEEEecCCcEEEE
Q 001336 1011 TASTLRLRCRINPTAYL-------PTN----P------SLRVYPLVIAGNPTDPNQFALGLTDGGVYII 1062 (1097)
Q Consensus 1011 d~~~~~~~~~~~~~~~~-------~~~----h------~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W 1062 (1097)
++.+++..+.+..-... ..+ + .+..+++ +.+.+ |+.+++++-..+.++++
T Consensus 303 n~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~-~~~~~-dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 303 NLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPL-LEFQK-DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcc-cccCC-CCeEEEeeeecceEEEE
Confidence 99998876655422110 000 0 1111121 23444 67788888888888877
No 313
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.49 E-value=0.0066 Score=70.99 Aligned_cols=633 Identities=13% Similarity=0.114 Sum_probs=302.2
Q ss_pred EeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccC--
Q 001336 315 TLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-- 392 (1097)
Q Consensus 315 ~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-- 392 (1097)
.++..+-..|+.+-++| ++.+||.-|.=.+-.+.+....... ..+ .. -...-++|..++.-.+
T Consensus 302 ~lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy-~~i----------le--t~~NLgPI~Dm~Vvd~d~ 366 (1096)
T KOG1897|consen 302 YLGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSY-VVI----------LE--TFVNLGPIVDMCVVDLDR 366 (1096)
T ss_pred ecCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCch-hhh----------hh--hcccccceeeEEEEeccc
Confidence 33355566778888888 4688888776566665543322100 000 00 0112347777766542
Q ss_pred --CCEEEEEE---CCCEEEEEEccCCeeeeeeeeeecccCcEEEEE--EecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001336 393 --GTLFGVAY---SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLA--FSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI 465 (1097)
Q Consensus 393 --~~~las~~---~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~--~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 465 (1097)
+..+++|+ .||+++|....-+-.......+.| -..++.+. +.++-.. +|+.+-.+ .-++..+...-....
T Consensus 367 q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~-eTrvl~i~~e~ee~~ 443 (1096)
T KOG1897|consen 367 QGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFIS-ETRVLNISEEVEETE 443 (1096)
T ss_pred cCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEecc-ceEEEEEccceEEec
Confidence 23455543 488999987554422222234556 44577777 5443333 33333322 234444322211111
Q ss_pred eecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEE
Q 001336 466 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 545 (1097)
Q Consensus 466 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 545 (1097)
..+.......+..+.- +|+.|+=.. ...||+++-. .....+.... .++....+.+...++.++.+ ..+...
T Consensus 444 ~~gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~~----~~l~y~ 514 (1096)
T KOG1897|consen 444 DPGFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPG-KITIGVVSANASQVVVAGGG----LALFYL 514 (1096)
T ss_pred cccccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCC-ceEEEEEeecceEEEEecCc----cEEEEE
Confidence 2222222222322211 222332222 1456666543 2233333333 33333334444455555432 235555
Q ss_pred eCCCCeeeEEecCCCCcceEEEEEcCCC------CEEEEEeCCCcEEE-EECCCCceEEEE--ecCCCCCCcceEEEcCC
Q 001336 546 NESEGAVKRTYHGLGKRSVGVVQFDTTK------NRFLAAGDEFMIKF-WDMDNVNLLASI--DADGGLQASPCIRFNKE 616 (1097)
Q Consensus 546 d~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~dg~i~i-wd~~~~~~~~~~--~~~~~~~~v~~v~~s~~ 616 (1097)
++..+.+....+..-...+.|+.++|-| +.++.|..+..+.+ .-..+...+... ....-...|.-.++-.|
T Consensus 515 ~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d 594 (1096)
T KOG1897|consen 515 EIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD 594 (1096)
T ss_pred EeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc
Confidence 6655553333333333478888888753 26777765444433 333344333322 21111223444555566
Q ss_pred CCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCcc--cc-cccccc---------ccc
Q 001336 617 GILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANA--NV-GTSLGE---------RTA 684 (1097)
Q Consensus 617 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~---------~~~ 684 (1097)
..+|.++..||.+.-|.+..+.-.+...+....-.... .+..+.+... -+ ..+.+. ...
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~---------~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~s 665 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPI---------SLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYS 665 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCc---------EEEEEeeCCceEEEEeCCCCEEEEecCCcEEEe
Confidence 88999999999988765544321221111111000000 0110100000 00 000000 001
Q ss_pred c-----ccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeecc
Q 001336 685 P-----AAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS 759 (1097)
Q Consensus 685 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 759 (1097)
| +..+..|+.+ ...-.+.....+.+++..++....-. .+. .|. ....+.+++.+....+.+.+.
T Consensus 666 pls~kev~~~c~f~s~-----a~~d~l~~~~~~~l~i~tid~iqkl~-irt--vpl---~~~prrI~~q~~sl~~~v~s~ 734 (1096)
T KOG1897|consen 666 PLSLKEVNHMCPFNSD-----AYPDSLASANGGALTIGTIDEIQKLH-IRT--VPL---GESPRRICYQESSLTFGVLSN 734 (1096)
T ss_pred ccchHHhhhhcccccc-----cCCceEEEecCCceEEEEecchhhcc-eee--ecC---CCChhheEecccceEEEEEec
Confidence 1 1111112111 11112222223455555554322211 111 222 234556677775554544443
Q ss_pred CcEEEEeccCCCCCCccCccccccCCcccCCCCCccccc-cCCCCCCCCCeeEEEEccC-CCEEEEEe-----------C
Q 001336 760 NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTN-DISDTNPEDAVPCFALSKN-DSYVMSAS-----------G 826 (1097)
Q Consensus 760 dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~h~~~v~~l~~s~d-g~~la~~s-----------d 826 (1097)
...... + . .+.......++++|..+-+.+.. .+....-...|.++.|..| ++++++|. .
T Consensus 735 r~e~~~------~-~-~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~ 806 (1096)
T KOG1897|consen 735 RIESSA------E-Y-YGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVN 806 (1096)
T ss_pred ccccch------h-h-cCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCccc
Confidence 211110 0 0 01111111345556665554332 1111011233445557777 77888773 1
Q ss_pred CeEEEEEcCCCceeEEeCCC--CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCE
Q 001336 827 GKISLFNMMTFKTMTTFMPP--PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNV 904 (1097)
Q Consensus 827 g~i~iwd~~~~~~~~~~~~~--~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~ 904 (1097)
|.|.|+....+..+.....+ .+.+.++..- ++++||. -...|++|+..+.+.++.-..|..++..+...-.|..
T Consensus 807 GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gde 882 (1096)
T KOG1897|consen 807 GRIIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDE 882 (1096)
T ss_pred ceEEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcE
Confidence 66888888774444433222 3455555443 5666654 4678999999998778777788899999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCc----------cee
Q 001336 905 LVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKL----------ECL 974 (1097)
Q Consensus 905 l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~----------~~~ 974 (1097)
++.|.-=+.+.+-..+..+- ....+...-.+ .+.+++.+-.+..|+.+-.+|.+.+-..++. +..
T Consensus 883 I~VgDlm~Sitll~y~~~eg---~f~evArD~~p--~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~ 957 (1096)
T KOG1897|consen 883 IAVGDLMRSITLLQYKGDEG---NFEEVARDYNP--NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEV 957 (1096)
T ss_pred EEEeeccceEEEEEEeccCC---ceEEeehhhCc--cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccce
Confidence 99998888877766655331 12222222222 5678888888888887767777776655421 111
Q ss_pred eeeecc------CCCCCEEE--EEEecCCCEEEEEecCCeEEEEe
Q 001336 975 KQFVPR------EASGPITH--ATYSCDSQSIYVAFEEGSVGVLT 1011 (1097)
Q Consensus 975 ~~~~~~------~h~~~v~~--v~~s~dg~~l~s~s~Dg~v~vwd 1011 (1097)
..|..+ .|..-|.+ -..+|-+.-+..|..+|+|-+--
T Consensus 958 ~~~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i~ 1002 (1096)
T KOG1897|consen 958 GKFHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFGTVNGSIGIIV 1002 (1096)
T ss_pred eeEEeccceeeeeecceEeeccccccCCCCcEEEEEccceEEEEE
Confidence 111110 13333333 13344455577788888887643
No 314
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.4e-05 Score=81.02 Aligned_cols=249 Identities=12% Similarity=0.101 Sum_probs=148.2
Q ss_pred ccCCCCCCeEEEEEccCCC-EEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001336 376 LSSDYTASVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 454 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd~~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~i 454 (1097)
++.+|...|..++|||..+ ++..++.+.+|+|.|+++...+. .+..| ..+++++|.-|..+ +|..|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5778999999999999777 88899999999999999976554 35556 78999999998876 8999999999999
Q ss_pred EECCCCce-eEEeec--CCcCeEEEeeccc----CCccEEEEEcCCCeEEEEEcCCCCc--eeeecCC-CCceEEEEEcc
Q 001336 455 WDAVTGTK-QYIFEG--HESPVYSICPHHK----ENIQFIFSTATDGKIKAWLYDNLGS--RVDYDAP-GHSSTMMAYSA 524 (1097)
Q Consensus 455 wd~~~~~~-~~~~~~--h~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~-~~~v~~~~~s~ 524 (1097)
+|++..+- +..+.+ ...+|..++.-+. +.|.+++....+ +..|++..... ....+.. .+...++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986542 223322 2344554432111 112344444433 34665543221 2222222 33555666777
Q ss_pred CCCEEEEeeeCCCCCceEEE----EeCCCCeeeEEec----CCCCcce---EEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q 001336 525 DGARLFSCGTNKEGESYLVE----WNESEGAVKRTYH----GLGKRSV---GVVQFDTTKNRFLAAG-DEFMIKFWDMDN 592 (1097)
Q Consensus 525 ~~~~l~~~~~~~~~~~~i~~----wd~~~~~~~~~~~----~~~~~~v---~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 592 (1097)
..+.++.......+..+++. .|-.+|..+-.-. +.....+ ..+.-.++.++++..+ +.+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 66666655543221111111 2222332221111 1110011 1122234556666544 678899999999
Q ss_pred CceEEEEecCCCCCCcceEEEcC-CC-CEEEEEECCCcEEEEEcC
Q 001336 593 VNLLASIDADGGLQASPCIRFNK-EG-ILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 593 ~~~~~~~~~~~~~~~v~~v~~s~-~~-~~l~s~~~dg~i~iw~~~ 635 (1097)
++.++++... .+|..++... ++ .+|++-.+ ..++||..+
T Consensus 421 ~evvQ~l~~~---epv~Dicp~~~n~~syLa~LTd-~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALS---EPVLDICPNDTNGSSYLALLTD-DRVHIYKNE 461 (463)
T ss_pred hheeeecccC---cceeecceeecCCcchhhheec-ceEEEEecC
Confidence 9999998763 4566665544 33 46665554 478887654
No 315
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.49 E-value=6e-05 Score=85.31 Aligned_cols=348 Identities=11% Similarity=0.086 Sum_probs=190.3
Q ss_pred EEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEE
Q 001336 396 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 475 (1097)
Q Consensus 396 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 475 (1097)
+.||+..|.|+|+-+.+++.++.+..|..-.. +.=-++...+. ++..+..|....|. . .|.-.+..
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~--~G~G~~~esk~--~l~~~~~~~~~~~g-D---------~HHp~~s~ 134 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSA--TGWGITNESKK--VLGEGARGGKYLNG-D---------THHPHMSF 134 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCC--cccCCchhHHH--HhhccccCCcccCC-C---------cCCCcccc
Confidence 56788999999999999988776544432111 11112222231 22222222222232 1 12111110
Q ss_pred EeecccCCccEEEEEcC-CCeEEEEEcCCCCceeeecCCC-CceEEEEEc--cCCCEEEEeeeCCCCCceEEEEeCCCCe
Q 001336 476 ICPHHKENIQFIFSTAT-DGKIKAWLYDNLGSRVDYDAPG-HSSTMMAYS--ADGARLFSCGTNKEGESYLVEWNESEGA 551 (1097)
Q Consensus 476 ~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s--~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 551 (1097)
- ...-||++|+.-.. +.+|-..+++..++....+... ..+..+++- |+..+++.++.
T Consensus 135 t--~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e----------------- 195 (635)
T PRK02888 135 T--DGTYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGE----------------- 195 (635)
T ss_pred c--CCccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcc-----------------
Confidence 0 12335677777664 5666666777666555444333 245555553 66667666542
Q ss_pred eeEEecCCCCcceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001336 552 VKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK 630 (1097)
Q Consensus 552 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~ 630 (1097)
..+-++++|+.+...+ ..+.+.+.|.++.+....+...+ ....++++++|.++++.+.+.
T Consensus 196 -------------~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg---npd~v~~spdGk~afvTsyNs--- 256 (635)
T PRK02888 196 -------------FRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG---NLDNVDTDYDGKYAFSTCYNS--- 256 (635)
T ss_pred -------------cccccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC---CcccceECCCCCEEEEeccCc---
Confidence 1123455665554333 56778888999888877776543 335789999999998876421
Q ss_pred EEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCccccccc
Q 001336 631 ILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEA 710 (1097)
Q Consensus 631 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1097)
+.+. .+..+... ..
T Consensus 257 ----E~G~-tl~em~a~-------------------------------------------------------------e~ 270 (635)
T PRK02888 257 ----EEGV-TLAEMMAA-------------------------------------------------------------ER 270 (635)
T ss_pred ----ccCc-ceeeeccc-------------------------------------------------------------cC
Confidence 1110 00000000 00
Q ss_pred ccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCC
Q 001336 711 VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP 790 (1097)
Q Consensus 711 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~ 790 (1097)
..+..++... + -++.++|++.... ++.|.+.|.....
T Consensus 271 -d~~vvfni~~--------------------i--ea~vkdGK~~~V~--gn~V~VID~~t~~------------------ 307 (635)
T PRK02888 271 -DWVVVFNIAR--------------------I--EEAVKAGKFKTIG--GSKVPVVDGRKAA------------------ 307 (635)
T ss_pred -ceEEEEchHH--------------------H--HHhhhCCCEEEEC--CCEEEEEECCccc------------------
Confidence 0111111110 0 0234466655542 4456665433100
Q ss_pred CCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEcCCCce------------eEEeCCCCCCeEEEEEe
Q 001336 791 PSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT------------MTTFMPPPPAATFLAFH 856 (1097)
Q Consensus 791 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~------------~~~~~~~~~~i~~l~~s 856 (1097)
..+..+...++ -......+.+||||+++++++ ++++.|.|+.+.+. ..+..- .......+|.
T Consensus 308 ~~~~~v~~yIP---VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFD 383 (635)
T PRK02888 308 NAGSALTRYVP---VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFD 383 (635)
T ss_pred cCCcceEEEEE---CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEEC
Confidence 00111111121 245667899999999999887 78999999987553 222221 2334567898
Q ss_pred CCCCCEEEEEECCCcEEEEEccc----------ceEEEEecccccCeEEE-----EEecCCCEEEEEe
Q 001336 857 PQDNNIIAIGMEDSSIQIYNVRV----------DEVKTKLKGHQKRITGL-----AFSNTLNVLVSSG 909 (1097)
Q Consensus 857 p~~~~~la~g~~dg~v~vwd~~~----------~~~~~~l~~h~~~V~~l-----~~s~dg~~l~s~~ 909 (1097)
+ +|....+-.-|..|..||+.+ ...+.++.-|..+..-. .-.|||++|++..
T Consensus 384 g-~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 384 G-RGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred C-CCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 8 788888888999999999986 34556666555432211 2258999998864
No 316
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.46 E-value=9.1e-05 Score=77.99 Aligned_cols=222 Identities=16% Similarity=0.095 Sum_probs=138.8
Q ss_pred CCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecc
Q 001336 401 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH 480 (1097)
Q Consensus 401 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 480 (1097)
.+|+|..||..+|+.+-... +..-.....+.. .+++. .+++++.++.|..||..+|+.+..+.. ...+...-
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~-~~~~~~~~~~~~-~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~--- 72 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYD-LGPGIGGPVATA-VPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP--- 72 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEE-CSSSCSSEEETE-EEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE---
T ss_pred CCCEEEEEECCCCCEEEEEE-CCCCCCCccceE-EEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee---
Confidence 36889999999998776542 221122222222 22455 577778999999999999998877764 22221111
Q ss_pred cCCccEEEEEcCCCeEEEEEcCCCCceeee-cCCC--C-ceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEe
Q 001336 481 KENIQFIFSTATDGKIKAWLYDNLGSRVDY-DAPG--H-SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY 556 (1097)
Q Consensus 481 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~--~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 556 (1097)
...+..++.++.++.+..+|..+++..... .... . .........++..++++.. ...|..+|+++|+.+..+
T Consensus 73 ~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 73 VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEE
T ss_pred eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEe
Confidence 112245677778889999999999888874 3221 1 1122233334777777654 346999999999998887
Q ss_pred cCCCCcc---------eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCC
Q 001336 557 HGLGKRS---------VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 627 (1097)
Q Consensus 557 ~~~~~~~---------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg 627 (1097)
....... +..-....++ .++.++.++.+..+|+.+++.+.... . ..+.. ....++..+++++.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~---~~~~~-~~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 149 PVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-I---SGIYS-LPSVDGGTLYVTSSDG 222 (238)
T ss_dssp ESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-S---S-ECE-CEECCCTEEEEEETTT
T ss_pred ecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-C---CCccC-CceeeCCEEEEEeCCC
Confidence 6643211 1122222234 77778777864444999999664333 1 12222 1345678888888999
Q ss_pred cEEEEEcCCCceE
Q 001336 628 GIKILANADGIRL 640 (1097)
Q Consensus 628 ~i~iw~~~~~~~~ 640 (1097)
.|..||..++...
T Consensus 223 ~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 223 RLYALDLKTGKVV 235 (238)
T ss_dssp EEEEEETTTTEEE
T ss_pred EEEEEECCCCCEE
Confidence 9999999999443
No 317
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.46 E-value=0.00018 Score=80.21 Aligned_cols=256 Identities=16% Similarity=0.164 Sum_probs=134.8
Q ss_pred ccCCCeEEEEE--------eCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEE
Q 001336 328 HPVQQILLVVG--------TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 399 (1097)
Q Consensus 328 spdg~~lla~g--------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 399 (1097)
|||++++|+.- +..+.+.|||+++++... +......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 68888776633 234678899999876543 22225678899999999999998
Q ss_pred ECCCEEEEEEccCCeeeeeeeeeec-------c---------cCcEEEEEEecCCCcEEEEEEe-CCCcEEEEECCCCce
Q 001336 400 YSKHIVHLYTYHGGDELRNHLEIEA-------H---------VGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGTK 462 (1097)
Q Consensus 400 ~~dg~i~iwd~~~~~~~~~~~~l~~-------h---------~~~V~~l~~s~d~~~~~l~s~s-~d~~i~iwd~~~~~~ 462 (1097)
. ++.|.+++..+++..+. +..| - -+.-..+.||||+++ |+... .+..|+.+.+.
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~~~---- 131 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYPLP---- 131 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEEEE----
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEEee----
Confidence 5 56899999888754332 2223 0 112356889999995 44433 33444444321
Q ss_pred eEEeecCC---cCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCcee-ee----cCCCCceEEEEEccCCCEEEEeee
Q 001336 463 QYIFEGHE---SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV-DY----DAPGHSSTMMAYSADGARLFSCGT 534 (1097)
Q Consensus 463 ~~~~~~h~---~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~----~~~~~~v~~~~~s~~~~~l~~~~~ 534 (1097)
...... ..+..+.+ |.+.. -.. .-.+.++|+.+++... .. .....-+..+.|+++++.++..-.
T Consensus 132 --~~~~~~~~yp~~~~~~Y-Pk~G~-~np----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~ 203 (353)
T PF00930_consen 132 --DYSPPDSQYPEVESIRY-PKAGD-PNP----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWL 203 (353)
T ss_dssp --EESSSTESS-EEEEEE---BTTS--------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEE
T ss_pred --ccCCccccCCccccccc-CCCCC-cCC----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEc
Confidence 111111 12334443 22211 110 1235567777665432 11 123446889999999994444443
Q ss_pred CC-CCCceEEEEeCCCCeeeEEecCCCCcce---EEEEEc-CCCCEEEEEe-CCCc--EEEEECCCCceEEEEecCCCCC
Q 001336 535 NK-EGESYLVEWNESEGAVKRTYHGLGKRSV---GVVQFD-TTKNRFLAAG-DEFM--IKFWDMDNVNLLASIDADGGLQ 606 (1097)
Q Consensus 535 ~~-~~~~~i~~wd~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~ 606 (1097)
++ .....+.+.|..++.....+.......+ ....+. +++..++..+ .+|. |++++...+... .+. .+.-
T Consensus 204 nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT--~G~~ 280 (353)
T PF00930_consen 204 NRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLT--SGDW 280 (353)
T ss_dssp ETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS---SSS
T ss_pred ccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccc--cCce
Confidence 33 3445577788877754433333222222 234444 6665555444 6665 555566655533 333 2233
Q ss_pred Ccc-eEEEcCCCCEEEEE
Q 001336 607 ASP-CIRFNKEGILLAVS 623 (1097)
Q Consensus 607 ~v~-~v~~s~~~~~l~s~ 623 (1097)
.|. .+.++++++.|+..
T Consensus 281 ~V~~i~~~d~~~~~iyf~ 298 (353)
T PF00930_consen 281 EVTSILGWDEDNNRIYFT 298 (353)
T ss_dssp -EEEEEEEECTSSEEEEE
T ss_pred eecccceEcCCCCEEEEE
Confidence 443 46677776655443
No 318
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.44 E-value=0.00033 Score=68.50 Aligned_cols=146 Identities=14% Similarity=0.079 Sum_probs=94.1
Q ss_pred EccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCCEEE
Q 001336 327 FHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVH 406 (1097)
Q Consensus 327 fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~ 406 (1097)
.-+|.+.+++.|+..+.+.--|..+|+..-... -...|-+-+.- -|++++.|...|.++
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i--------------------lg~RiE~sa~v-vgdfVV~GCy~g~lY 76 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI--------------------LGVRIECSAIV-VGDFVVLGCYSGGLY 76 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh--------------------hCceeeeeeEE-ECCEEEEEEccCcEE
Confidence 345666788999999999999999998754311 12233332222 577899999999999
Q ss_pred EEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccE
Q 001336 407 LYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQF 486 (1097)
Q Consensus 407 iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 486 (1097)
+-+.++|.....+..+..-. + .....+++. ++..|+.|++.+..|..+..++...+--.+...+-++.+. + ..
T Consensus 77 fl~~~tGs~~w~f~~~~~vk--~-~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~-~s 149 (354)
T KOG4649|consen 77 FLCVKTGSQIWNFVILETVK--V-RAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-D-GS 149 (354)
T ss_pred EEEecchhheeeeeehhhhc--c-ceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-C-ce
Confidence 99999997665443322211 1 223456777 8999999999999999999999886643322222233222 2 23
Q ss_pred EEEEcCCCeEEEEE
Q 001336 487 IFSTATDGKIKAWL 500 (1097)
Q Consensus 487 l~s~~~dg~i~iwd 500 (1097)
|+.+...|.+.--.
T Consensus 150 ly~a~t~G~vlavt 163 (354)
T KOG4649|consen 150 LYAAITAGAVLAVT 163 (354)
T ss_pred EEEEeccceEEEEc
Confidence 44444445554433
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.43 E-value=7.2e-05 Score=88.51 Aligned_cols=279 Identities=11% Similarity=0.168 Sum_probs=159.6
Q ss_pred CCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEE
Q 001336 319 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 398 (1097)
Q Consensus 319 ~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 398 (1097)
...|.++.|.-++..+ ..+..+|.|.+-|.++..... ...-...|.+++||||++.++.
T Consensus 68 d~~i~s~~fl~d~~~i-~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSI-CVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLAL 126 (1265)
T ss_pred CcceEEEEEecccceE-EEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEE
Confidence 3589999999998865 677888999999888776543 2335678999999999999999
Q ss_pred EECCCEEEEEEccCCeeeeeeeeee---cccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEeecCCcCeE
Q 001336 399 AYSKHIVHLYTYHGGDELRNHLEIE---AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVY 474 (1097)
Q Consensus 399 ~~~dg~i~iwd~~~~~~~~~~~~l~---~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~ 474 (1097)
.+..+++.+-+.. -..+... .+. ...+....+-|-....+ +-|+. |....-+.... +.+....-+. .=.
T Consensus 127 iT~~~tll~mT~~-f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs~-gr~~~~~~~~~ek~~~~~~~~~-~~~ 199 (1265)
T KOG1920|consen 127 ITGRQTLLFMTKD-FEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGSE-GRQAARQKIEKEKALEQIEQDD-HKT 199 (1265)
T ss_pred EeCCcEEEEEecc-ccchhcc-ccccccccccccceeccccccee---eecch-hhhcccccccccccccchhhcc-CCc
Confidence 9998887665431 1111100 010 00111222333222221 11111 11111110000 0000001111 223
Q ss_pred EEeecccCCccEEEEE-----cCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCC
Q 001336 475 SICPHHKENIQFIFST-----ATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 549 (1097)
Q Consensus 475 ~~~~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 549 (1097)
+++| .+||+++++. ..-+.|++||-+ +.....-....+.-.+++|-|.|..+++.....+ +..|.++.-..
T Consensus 200 ~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErNG 275 (1265)
T KOG1920|consen 200 SISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERNG 275 (1265)
T ss_pred eEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecCC
Confidence 4666 7888888873 223899999876 3222222233334568999999999999876554 44687776332
Q ss_pred ---CeeeEEecCCCCcceEEEEEcCCCCEEEE---EeCCCcEEEEECCCCceE--EEEecCCCCCCcceEEEcCCC-CEE
Q 001336 550 ---GAVKRTYHGLGKRSVGVVQFDTTKNRFLA---AGDEFMIKFWDMDNVNLL--ASIDADGGLQASPCIRFNKEG-ILL 620 (1097)
Q Consensus 550 ---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~~-~~l 620 (1097)
|.....+..... .+..++|+.++..|+. ......|++|...+..-. +.+... ...-+.|+|.. ..+
T Consensus 276 L~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~----~~~~~~W~p~~~~~L 350 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS----QKALLMWDPVTEKTL 350 (1265)
T ss_pred ccccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecc----ccccccccCCCceeE
Confidence 222222333332 4889999999999888 446666999998775433 223322 11238898833 344
Q ss_pred EEEECCCcEEEEEc
Q 001336 621 AVSTNDNGIKILAN 634 (1097)
Q Consensus 621 ~s~~~dg~i~iw~~ 634 (1097)
.+-..+|...++++
T Consensus 351 ~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 351 HVLRESGQRLVRDF 364 (1265)
T ss_pred EEEecCCcEEEEEE
Confidence 44446666666554
No 320
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.42 E-value=1.5e-06 Score=84.26 Aligned_cols=198 Identities=16% Similarity=0.144 Sum_probs=121.2
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEcccceEE------------EEecccccCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001336 850 ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK------------TKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917 (1097)
Q Consensus 850 i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~------------~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iw 917 (1097)
++.+.++ ....|+++..++.+..+....+.+. ..+..|+.+-..=+.+--+..++++..||.+.++
T Consensus 39 ~~~~~~v--~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLS--AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeech--hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 5666666 3456777777776666655444332 2222333332222333346779999999999999
Q ss_pred EcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE------eCCeEEEEeCCCcceeeeeeccCCCCCEEEEEE
Q 001336 918 STDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV------HETQIAIYEAPKLECLKQFVPREASGPITHATY 991 (1097)
Q Consensus 918 d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~------~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~ 991 (1097)
+.+.-. .. ..+++..+. ...+.+.-..++++.++ .-+..+.|+++..+.+..-. .-...|.+++-
T Consensus 117 s~~~~~-~~--~~~i~~~~~----~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~--~~~~~v~~l~~ 187 (319)
T KOG4714|consen 117 STDKDL-AL--MSRIPSIHS----GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK--KALDAVTALCS 187 (319)
T ss_pred echHHH-hh--hhhcccccc----cccccceeecccEEecCCcceEeeccceeeecccccccccccc--cccccchhhhC
Confidence 977611 11 111111111 12233333445555542 34556677766433322111 11334889998
Q ss_pred ecCCCE-EEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCC
Q 001336 992 SCDSQS-IYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1066 (1097)
Q Consensus 992 s~dg~~-l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~ 1066 (1097)
.|..+. +++|+.||.+.+||.++.... ..+...|...++-+ -|+|.++..|+++++||++.-||.+.
T Consensus 188 hp~qq~~v~cgt~dg~~~l~d~rn~~~p------~S~l~ahk~~i~eV--~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 188 HPAQQHLVCCGTDDGIVGLWDARNVAMP------VSLLKAHKAEIWEV--HFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CcccccEEEEecCCCeEEEEEcccccch------HHHHHHhhhhhhhe--eccCCCchheeEecCCCcEEEEcCCC
Confidence 886655 667888999999999887432 22233577888866 89999999999999999999999884
No 321
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.42 E-value=7.7e-05 Score=84.48 Aligned_cols=187 Identities=9% Similarity=0.007 Sum_probs=122.2
Q ss_pred EEEccCCCEEEEEe--CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECC---C-cEEEEEcccceEEEE
Q 001336 812 FALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED---S-SIQIYNVRVDEVKTK 885 (1097)
Q Consensus 812 l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~d---g-~v~vwd~~~~~~~~~ 885 (1097)
+=+++||+.+...+ .+.+.+.|.++.+...++.- .+....++++| +++++++.+.+ | ++..-+..+...+..
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 34567898775555 57789999998887777653 33567789999 88888877632 1 333333222211111
Q ss_pred ecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccc-ceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE--eCCe
Q 001336 886 LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQ-ASKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQ 962 (1097)
Q Consensus 886 l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~--~d~~ 962 (1097)
+.-. .+ -++.++|++... .++.|.+.|..+.... ......++.+.. ...+.+||||++++++ .+.+
T Consensus 276 fni~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKs-----PHGV~vSPDGkylyVanklS~t 344 (635)
T PRK02888 276 FNIA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKN-----PHGVNTSPDGKYFIANGKLSPT 344 (635)
T ss_pred EchH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCC-----ccceEECCCCCEEEEeCCCCCc
Confidence 1100 00 133567877665 3677999998871000 012223333333 5779999999999995 6799
Q ss_pred EEEEeCCCcce------------eeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCC
Q 001336 963 IAIYEAPKLEC------------LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1014 (1097)
Q Consensus 963 v~vwd~~~~~~------------~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~ 1014 (1097)
|.|+|+++.+. ..+... ...-...+|+++|....|...|..|..|++..
T Consensus 345 VSVIDv~k~k~~~~~~~~~~~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 345 VTVIDVRKLDDLFDGKIKPRDAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEEEChhhhhhhhccCCccceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 99999998663 333332 34556789999999888999999999999886
No 322
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.39 E-value=1e-06 Score=61.93 Aligned_cols=39 Identities=28% Similarity=0.543 Sum_probs=37.2
Q ss_pred ceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001336 880 DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918 (1097)
Q Consensus 880 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd 918 (1097)
++++..+.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 323
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.36 E-value=0.0016 Score=63.92 Aligned_cols=137 Identities=9% Similarity=-0.098 Sum_probs=91.0
Q ss_pred cEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcce
Q 001336 485 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV 564 (1097)
Q Consensus 485 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 564 (1097)
.+++.|+..+.+.--|..+++...+..... .+.+-+.- -|++++.++.++ .+++.+..+|.....+..... .-
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~-RiE~sa~v-vgdfVV~GCy~g----~lYfl~~~tGs~~w~f~~~~~-vk 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGV-RIECSAIV-VGDFVVLGCYSG----GLYFLCVKTGSQIWNFVILET-VK 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCc-eeeeeeEE-ECCEEEEEEccC----cEEEEEecchhheeeeeehhh-hc
Confidence 567777777777777777766665543322 33322222 477788888644 599999999988877765543 22
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001336 565 GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK 630 (1097)
Q Consensus 565 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~ 630 (1097)
......+++..+.+|+.|+..+..|..+...+...+..+. ...+-++.|-...|+.+...|.+.
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCCceEEEEeccceEE
Confidence 3345678899999999999999999999999988775433 233445556333444455555443
No 324
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.29 E-value=1.3e-05 Score=91.17 Aligned_cols=182 Identities=15% Similarity=0.180 Sum_probs=133.6
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEE
Q 001336 817 NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITG 895 (1097)
Q Consensus 817 dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 895 (1097)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|.++.+.++++..|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 344566666 778889999988887777655556666665 6789999999999999999999999999999999987
Q ss_pred EEEecCCCEEEEEeC---------CCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCC--CcEEEEEeCCeEE
Q 001336 896 LAFSNTLNVLVSSGA---------DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD--QTHLLAVHETQIA 964 (1097)
Q Consensus 896 l~~s~dg~~l~s~~~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d--g~~l~~~~d~~v~ 964 (1097)
+.. .|+.|+++|. |.-|+|||+..-+.. ..++.+.+. .-+.|.|. .++.+++..|+..
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral--~PI~~~~~P-------~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL--SPIQFPYGP-------QFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhcc--CCcccccCc-------hhhhhcccccceEEEEeccccee
Confidence 555 6899999985 566899999874422 223333322 33667774 3444447889999
Q ss_pred EEeCCCcc-e-eeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeC
Q 001336 965 IYEAPKLE-C-LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTA 1012 (1097)
Q Consensus 965 vwd~~~~~-~-~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~ 1012 (1097)
+-|..+.. . ...+........+..+++|++|..|+.|..+|.|-+|.-
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 99944321 1 112221122456999999999999999999999999983
No 325
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.29 E-value=3.2e-07 Score=71.24 Aligned_cols=52 Identities=31% Similarity=0.552 Sum_probs=42.6
Q ss_pred hhhhhhhcccChHHHHHHhccccccCCccccceeeehhhHhhhhHHHhcCChh
Q 001336 2 RYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRA 54 (1097)
Q Consensus 2 ~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~E~l~~~~~~ 54 (1097)
..++++|++|+|++|++.+...........+. +.|.|++|+|+||++.++..
T Consensus 6 ~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~-l~f~L~~q~~lell~~~~~~ 57 (58)
T smart00668 6 KRIRELILKGDWDEALEWLSSLKPPLLERNSK-LEFELRKQKFLELVRQGKLE 57 (58)
T ss_pred HHHHHHHHcCCHHHHHHHHHHcCHHHhccCCC-chhHHHHHHHHHHHHcCCcC
Confidence 57899999999999999999885543333333 99999999999999987653
No 326
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.27 E-value=0.00013 Score=81.62 Aligned_cols=282 Identities=15% Similarity=0.076 Sum_probs=161.5
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
+...|.--+++..++++ +.|+.-|.+.+|+-..++.+..+ ..+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~l-~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYL-AMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCceE-EEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhh
Confidence 44455566677777865 89999999999999888765421 234556677788999999999
Q ss_pred EEECCCEEEEEEccCCeeeeeee--e-eecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC----ceeEEeecCC
Q 001336 398 VAYSKHIVHLYTYHGGDELRNHL--E-IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG----TKQYIFEGHE 470 (1097)
Q Consensus 398 s~~~dg~i~iwd~~~~~~~~~~~--~-l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~h~ 470 (1097)
.|+..|.|.|+-+..+....... . -..|...|++++|++|+. .+++|...|.|..-.+.+. -..+.+....
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 99999999999887643322111 1 123788999999999999 7999999999999888772 1122333345
Q ss_pred cCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCc--eEEEEEccC----CCEEEEeeeCCCCCceEEE
Q 001336 471 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHS--STMMAYSAD----GARLFSCGTNKEGESYLVE 544 (1097)
Q Consensus 471 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~s~~----~~~l~~~~~~~~~~~~i~~ 544 (1097)
..|-.+.+. ++.+|++.. -.. .+++.+.......-...... -...+|-|. .+-.+.++..| .++
T Consensus 171 s~IVQlD~~---q~~LLVStl-~r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-----~Rl 240 (726)
T KOG3621|consen 171 SEIVQLDYL---QSYLLVSTL-TRC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-----LRL 240 (726)
T ss_pred cceEEeecc---cceehHhhh-hhh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-----Cce
Confidence 666666542 223333333 232 34554433321111111111 334555553 33444444333 677
Q ss_pred EeCCC-CeeeEEecCCC------C----------c------------ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001336 545 WNESE-GAVKRTYHGLG------K----------R------------SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL 595 (1097)
Q Consensus 545 wd~~~-~~~~~~~~~~~------~----------~------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 595 (1097)
|...- |+.+++..-.. . . ....+.+ -.+..+++-++-| |+|++.++.+.
T Consensus 241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~-l~~~~vLa~te~G-iyv~d~~~~~v 318 (726)
T KOG3621|consen 241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSST-LHSDRVLAWTEVG-IYVFDSNNSQV 318 (726)
T ss_pred EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEE-eecceEEEeecce-EEEEEeccceE
Confidence 76542 33333321100 0 0 0000111 1122444444444 88888877665
Q ss_pred EEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 596 LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 596 ~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
+.-... ...|..|+ ..++-|++-..|+.+++..+.+.
T Consensus 319 ~l~se~---~~DI~dVs--~~~neiFvL~~d~~l~~~sv~s~ 355 (726)
T KOG3621|consen 319 YLWSEG---GHDILDVS--HCGNEIFVLNLDRGLKVESVASR 355 (726)
T ss_pred EEeecC---CCceeEEe--ecCceEEEEecCCceeEEEeehh
Confidence 544422 22343433 34666777777777777666554
No 327
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.25 E-value=0.00036 Score=73.25 Aligned_cols=284 Identities=10% Similarity=0.100 Sum_probs=157.8
Q ss_pred eEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceEEEEecCCC-----C
Q 001336 541 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG----------DEFMIKFWDMDNVNLLASIDADGG-----L 605 (1097)
Q Consensus 541 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~-----~ 605 (1097)
++.++|..+++.+-.+.... ...+..+|+++.+++++ ..-.|.+||..+-.+...+..+.. .
T Consensus 18 rv~viD~d~~k~lGmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEETTTTEEEEEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred eEEEEECCCCcEEEEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 58999999998887776543 34467899999988754 234699999999988887765432 1
Q ss_pred CCcceEEEcCCCCEEEEE--ECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCcccccccccccc
Q 001336 606 QASPCIRFNKEGILLAVS--TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERT 683 (1097)
Q Consensus 606 ~~v~~v~~s~~~~~l~s~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1097)
...+..+++.|++++++. +-...|.|.|+... +.+..+.-+.....
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~-kvv~ei~~PGC~~i------------------------------- 142 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK-KVVGEIDTPGCWLI------------------------------- 142 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT-EEEEEEEGTSEEEE-------------------------------
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCC-ceeeeecCCCEEEE-------------------------------
Confidence 123456777777776664 23446777777666 44444432211100
Q ss_pred ccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEE
Q 001336 684 APAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVH 763 (1097)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i 763 (1097)
.| ...+.+.+-+.||++....++......+... ..-......-+..-++..++..++..+-+|.|
T Consensus 143 yP--------------~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t-~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v 207 (342)
T PF06433_consen 143 YP--------------SGNRGFSMLCGDGSLLTVTLDADGKEAQKST-KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNV 207 (342)
T ss_dssp EE--------------EETTEEEEEETTSCEEEEEETSTSSEEEEEE-EESSTTTS-B-S--EEETTTTEEEEEBTTSEE
T ss_pred Ee--------------cCCCceEEEecCCceEEEEECCCCCEeEeec-cccCCCCcccccccceECCCCeEEEEecCCEE
Confidence 00 0012355666677777777764433322111 11111122223344455555556666777777
Q ss_pred EEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe----CC-------eEEEE
Q 001336 764 KLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS----GG-------KISLF 832 (1097)
Q Consensus 764 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s----dg-------~i~iw 832 (1097)
+--++....... ..-|.+.+........ -.+.-.-+++++....|.+.- ++ .|.++
T Consensus 208 ~~~dlsg~~~~~---------~~~~~~~t~~e~~~~W----rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 208 YSADLSGDSAKF---------GKPWSLLTDAEKADGW----RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp EEEEETTSSEEE---------EEEEESS-HHHHHTTE----EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred EEEeccCCcccc---------cCcccccCccccccCc----CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 776665432111 1123322211110000 112234477776665555432 22 38889
Q ss_pred EcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEE-CCCcEEEEEcccceEEEEecc
Q 001336 833 NMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM-EDSSIQIYNVRVDEVKTKLKG 888 (1097)
Q Consensus 833 d~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~-~dg~v~vwd~~~~~~~~~l~~ 888 (1097)
|+.+++.+..+.. ..++.+++.+.++..+|...+ .++.+.+||..+|+.++++.+
T Consensus 275 D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 275 DLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 9999999998863 346889999995555775544 578999999999999988774
No 328
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.23 E-value=0.0016 Score=69.86 Aligned_cols=228 Identities=12% Similarity=0.058 Sum_probs=114.8
Q ss_pred EEEccCCCEEEEEEC-C--CEEEEEEccCCeeeeeeeeeecccC-cEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001336 387 VMWSPDGTLFGVAYS-K--HIVHLYTYHGGDELRNHLEIEAHVG-SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK 462 (1097)
Q Consensus 387 v~~spd~~~las~~~-d--g~i~iwd~~~~~~~~~~~~l~~h~~-~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~ 462 (1097)
=+|.+||+.|+.++. | ..+.+.|+.+++..+ |..+.+ ......++++++ .++-......|+-.|+++.+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--E
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCcE
Confidence 467889987777665 4 467888999987443 433321 122456778888 455455567899999999887
Q ss_pred eEEeecCCcCeEEEeecccCCccEEEEEcC----------------------CCeEEEEEcCCCCceeeecCCCCceEEE
Q 001336 463 QYIFEGHESPVYSICPHHKENIQFIFSTAT----------------------DGKIKAWLYDNLGSRVDYDAPGHSSTMM 520 (1097)
Q Consensus 463 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 520 (1097)
...+.-....+....|..+.++..++..-. ...|.--|+.+++....+. ....+..+
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~ 193 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHV 193 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEE
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCc
Confidence 666665666665566655666665543211 1234445666655544444 44577889
Q ss_pred EEccCCCEEEEeeeCCCCCc---eEEEEeCCCCeeeEEecCCC-CcceEEEEEcCCCCEEEEEe-----CCCcEEEEECC
Q 001336 521 AYSADGARLFSCGTNKEGES---YLVEWNESEGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAG-----DEFMIKFWDMD 591 (1097)
Q Consensus 521 ~~s~~~~~l~~~~~~~~~~~---~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-----~dg~i~iwd~~ 591 (1097)
.|+|....++.-+..+..+. .|.+.+.. +...+.+..+. ...+.-=.|.|+|..+.--+ .+..|.-+|+.
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 99997766666555443332 35444533 33333333332 22444557899997766533 34467778898
Q ss_pred CCceEEEEecCCCCCCcceEEEcCCCCEEEEEECC
Q 001336 592 NVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 626 (1097)
Q Consensus 592 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d 626 (1097)
+++........ .....-.++||.+++-=+.|
T Consensus 273 t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 273 TGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp T--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 88765444322 34456667899888764444
No 329
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.22 E-value=0.0023 Score=68.69 Aligned_cols=281 Identities=14% Similarity=0.122 Sum_probs=140.8
Q ss_pred EEEEccCCCeEEEEEeCCCe--EEEEEcCCCceeeeeeeeEeeccccCccccccccCCCC-CCeEEEEEccCCCEEEEEE
Q 001336 324 SMDFHPVQQILLVVGTNMGD--VMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT-ASVNRVMWSPDGTLFGVAY 400 (1097)
Q Consensus 324 ~v~fspdg~~lla~gs~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spd~~~las~~ 400 (1097)
.=+|.+||+.||.++..||. +.+.|+.+++... ++... .......++|+++.++...
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~ 99 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVK 99 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEE
Confidence 34688999999998888774 5555677776554 22222 2233567789999988877
Q ss_pred CCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEe--cCCCcEEEEEEe----------------------CCCcEEEEE
Q 001336 401 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS--YPNKQLSVVTCG----------------------EDRVIKVWD 456 (1097)
Q Consensus 401 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s--~d~~~~~l~s~s----------------------~d~~i~iwd 456 (1097)
....|+--|+.+.+.. .+ +......+-...|. .|+. .++..- ..+.|.-.|
T Consensus 100 ~~~~l~~vdL~T~e~~-~v--y~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id 174 (386)
T PF14583_consen 100 NGRSLRRVDLDTLEER-VV--YEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID 174 (386)
T ss_dssp TTTEEEEEETTT--EE-EE--EE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred CCCeEEEEECCcCcEE-EE--EECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence 7788999999997643 32 33445555556664 3444 332221 123566667
Q ss_pred CCCCceeEEeecCCcCeEEEeecccCCccEEEEEc---CCCe-EEEEEcCCCCceeee-cC--CCCceEEEEEccCCCEE
Q 001336 457 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA---TDGK-IKAWLYDNLGSRVDY-DA--PGHSSTMMAYSADGARL 529 (1097)
Q Consensus 457 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~-i~iwd~~~~~~~~~~-~~--~~~~v~~~~~s~~~~~l 529 (1097)
+.+|+....+. -...+..+.|+|..+ ..|+-|- .+.. -|||-+++....... .. ....+..=-|.|||..+
T Consensus 175 l~tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 175 LKTGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTI 252 (386)
T ss_dssp TTT--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-E
T ss_pred CCCCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEE
Confidence 88877554444 455667777766543 3444442 2222 367766544332221 11 12234445689999988
Q ss_pred EEeee-CCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCC----------------cEEEEECCC
Q 001336 530 FSCGT-NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF----------------MIKFWDMDN 592 (1097)
Q Consensus 530 ~~~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------------~i~iwd~~~ 592 (1097)
...+. .+..+..|.-+|+.+++........ .......+++|++++-=+.|. -|+++++..
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~ 329 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEA 329 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTT
T ss_pred EEEeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecccc
Confidence 87654 3334667888899887654433321 344556678887776544332 467788887
Q ss_pred CceEEEEecC-------C-CCCCcceEEEcCCCCEEEEEE-CCCcEEEEEc
Q 001336 593 VNLLASIDAD-------G-GLQASPCIRFNKEGILLAVST-NDNGIKILAN 634 (1097)
Q Consensus 593 ~~~~~~~~~~-------~-~~~~v~~v~~s~~~~~l~s~~-~dg~i~iw~~ 634 (1097)
++........ + ....-..+.|+|||++++..| ..|...||-+
T Consensus 330 ~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 330 GRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp TEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred CceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 6654322210 0 001224789999998776655 4666666643
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.21 E-value=0.0002 Score=84.89 Aligned_cols=248 Identities=10% Similarity=0.046 Sum_probs=147.4
Q ss_pred CCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001336 381 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 460 (1097)
Q Consensus 381 ~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 460 (1097)
.+.|.++.|--++.-++.+..+|.|.+-|..+..... ...-...|.+++||||++ +++-.+.++++.+-+ .+-
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei----vg~vd~GI~aaswS~Dee--~l~liT~~~tll~mT-~~f 140 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI----VGNVDNGISAASWSPDEE--LLALITGRQTLLFMT-KDF 140 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee----eeeccCceEEEeecCCCc--EEEEEeCCcEEEEEe-ccc
Confidence 3689999999999999999999999999888765321 334567899999999999 677777677776654 333
Q ss_pred ceeEEeecCC-----cCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeC
Q 001336 461 TKQYIFEGHE-----SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 535 (1097)
Q Consensus 461 ~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 535 (1097)
.++..-.-+. +..-.+-|-... .=+-|+. |....-+................-+++.|--||+++++....
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrke---Tqfrgs~-gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKE---TQFRGSE-GRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred cchhccccccccccccccceecccccc---eeeecch-hhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEe
Confidence 3332211111 111112221100 0111111 111111100000000000111233568999999999986544
Q ss_pred CCCC-ceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEe---CCCcEEEEECCC---CceEEEEecCCCCCCc
Q 001336 536 KEGE-SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG---DEFMIKFWDMDN---VNLLASIDADGGLQAS 608 (1097)
Q Consensus 536 ~~~~-~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~---~~~~~~~~~~~~~~~v 608 (1097)
...+ ..|++||-+ |.+-.. .......-.+++|-|.|..+++-. .|+.|.+|..+. |+...... .....|
T Consensus 217 ~~~~~RkirV~drE-g~Lns~-se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p--~de~~v 292 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-GALNST-SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP--LDEKEV 292 (1265)
T ss_pred ccCCceeEEEeccc-chhhcc-cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCc--ccccch
Confidence 3333 789999977 433222 222222446789999999888864 566899998654 22222222 224448
Q ss_pred ceEEEcCCCCEEEE---EECCCcEEEEEcCCCceEEEE
Q 001336 609 PCIRFNKEGILLAV---STNDNGIKILANADGIRLLRT 643 (1097)
Q Consensus 609 ~~v~~s~~~~~l~s---~~~dg~i~iw~~~~~~~~~~~ 643 (1097)
..++|+.++..||+ ......|++|-+.+-+-.++.
T Consensus 293 e~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq 330 (1265)
T KOG1920|consen 293 EELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQ 330 (1265)
T ss_pred heeeecCCCCceeeeecccccceEEEEEecCeEEEEEE
Confidence 99999999999988 445556999998876544443
No 331
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.21 E-value=5e-06 Score=58.35 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=34.4
Q ss_pred ceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEe
Q 001336 972 ECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLT 1011 (1097)
Q Consensus 972 ~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd 1011 (1097)
+++..+. +|...|.+++|+|++.+|++++.|++|++||
T Consensus 2 ~~~~~~~--~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFR--GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEE--SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEc--CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4556665 8999999999999999999999999999997
No 332
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=7.3e-05 Score=77.57 Aligned_cols=244 Identities=13% Similarity=0.149 Sum_probs=137.0
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCC-CEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG-TLF 396 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~-~~l 396 (1097)
+...|..++|||..+-|+..++.+..|.|.|+++...... +..| ..+++++|.-|. .+|
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDLDERHVI 251 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeeccCCccee
Confidence 7788999999999988889999999999999998876653 3344 799999999865 567
Q ss_pred EEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEE------ecCCCcEEEEEEeCCCcEEEEECC--CCceeEEee-
Q 001336 397 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF------SYPNKQLSVVTCGEDRVIKVWDAV--TGTKQYIFE- 467 (1097)
Q Consensus 397 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~------s~d~~~~~l~s~s~d~~i~iwd~~--~~~~~~~~~- 467 (1097)
..|-.+|.|.|||++..+.......-+-...+|..++. .+-+. +++..+. .+..|++. .+....+++
T Consensus 252 YaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt--~l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALT--VLQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred EEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeeh--hhhhhhhhccccCCCccccc
Confidence 77888999999999865433211111112334444433 23344 3444433 24566653 222222222
Q ss_pred cCCcCeEEEeecccCCccEEEEEcCCC------eEEEE-EcCCCCceeeec-CC-CC------ceEEEEEccCCCEEEEe
Q 001336 468 GHESPVYSICPHHKENIQFIFSTATDG------KIKAW-LYDNLGSRVDYD-AP-GH------SSTMMAYSADGARLFSC 532 (1097)
Q Consensus 468 ~h~~~v~~~~~~~~~~~~~l~s~~~dg------~i~iw-d~~~~~~~~~~~-~~-~~------~v~~~~~s~~~~~l~~~ 532 (1097)
+..+...++.+++..+ ..|++.-.+. .|-.. |...+....... .. +. .-..+.-.++.++++..
T Consensus 328 e~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~ 406 (463)
T KOG1645|consen 328 EPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV 406 (463)
T ss_pred CCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEe
Confidence 1233444454443332 2333332210 00000 111111111100 00 00 11122234566666665
Q ss_pred eeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEc-CCCCEEEEEeCCCcEEEEECC
Q 001336 533 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFD-TTKNRFLAAGDEFMIKFWDMD 591 (1097)
Q Consensus 533 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~ 591 (1097)
+. ..+.+.+||..+++.++++.... ++..++.. -++.-++..-.|..++||..+
T Consensus 407 gd---~tn~lil~D~~s~evvQ~l~~~e--pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 407 GD---STNELILQDPHSFEVVQTLALSE--PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cC---CcceeEEeccchhheeeecccCc--ceeecceeecCCcchhhheecceEEEEecC
Confidence 43 35679999999999999988763 66666543 344444444456678887654
No 333
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=3e-06 Score=85.63 Aligned_cols=139 Identities=16% Similarity=0.224 Sum_probs=104.5
Q ss_pred EEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc-C
Q 001336 314 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-D 392 (1097)
Q Consensus 314 ~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d 392 (1097)
+.|..++.|.++.|.-.+. |+..|...|.|..+|++.+.+-.. | .. .---|.+.|+++..-. +
T Consensus 247 qsf~sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~-----~---------~a-~rlyh~Ssvtslq~Lq~s 310 (425)
T KOG2695|consen 247 QSFQSKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNG-----W---------CA-QRLYHDSSVTSLQILQFS 310 (425)
T ss_pred cccccchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCC-----c---------ce-EEEEcCcchhhhhhhccc
Confidence 3444677899999999887 778999999999999986621110 0 00 0123889999998877 8
Q ss_pred CCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeec
Q 001336 393 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 468 (1097)
Q Consensus 393 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 468 (1097)
+.+|.+.+.+|+|++||.+--++-+...++.||.+.-..+-+.-+...-.+++++.|...|||.++.|..+.++.-
T Consensus 311 ~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 311 QQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred cceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 8999999999999999998766533455788997765555544332222789999999999999999999988764
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00033 Score=80.06 Aligned_cols=198 Identities=14% Similarity=0.157 Sum_probs=138.3
Q ss_pred EEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCC-eEEEEEeCCCCCEEEEEECCC-----cEEEEEcccc----
Q 001336 812 FALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPA-ATFLAFHPQDNNIIAIGMEDS-----SIQIYNVRVD---- 880 (1097)
Q Consensus 812 l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~~~~~la~g~~dg-----~v~vwd~~~~---- 880 (1097)
-++++.+..++.|+ +|.|.+++- +.+.++.++.+... |+.+-... +..+|++.+.|+ .++||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 35778889999998 899888874 44555778877777 45454443 446788777665 4899998642
Q ss_pred --eEE--EEecc-----cccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCC
Q 001336 881 --EVK--TKLKG-----HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD 951 (1097)
Q Consensus 881 --~~~--~~l~~-----h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 951 (1097)
+++ ..+.. ...++..+++|.+-+.+|.|-.||.|..+.-+--+.+..+..-...+. .+|+.+++..|
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence 333 12222 246788999999999999999999999886443333333333333333 56999999999
Q ss_pred CcE-EEEEeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCce
Q 001336 952 QTH-LLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRL 1017 (1097)
Q Consensus 952 g~~-l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~ 1017 (1097)
+.. ++++.-.+|.+|.+.... ........|...+.|..|++...-+++++ +..+.+|+.+....
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGP 247 (933)
T ss_pred CceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcce
Confidence 987 555788899999998444 33333457788999999987655466555 45699999875443
No 335
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=3.7e-05 Score=86.86 Aligned_cols=190 Identities=16% Similarity=0.167 Sum_probs=134.1
Q ss_pred CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccc
Q 001336 847 PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQA 926 (1097)
Q Consensus 847 ~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~ 926 (1097)
...++|++++ +++++.|+.+|.|++++... .. .....|+.. ..+|.+++||+.||+|.|-.+.+.+...
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 3457788886 47999999999999999763 33 444446554 5689999999999999999988865322
Q ss_pred eeeEeecCCCCCCccCCeEEEEcCC-----CcEEEEEeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEE
Q 001336 927 SKFLTIPNGRTASALADTRVQFHLD-----QTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVA 1001 (1097)
Q Consensus 927 ~~~~~~~~~~~~~~~~v~~l~~s~d-----g~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~ 1001 (1097)
...-+ .++.+++++|| .+.++++....+.++.-+-...........-.++|.++.|- |.++|=+
T Consensus 108 -----~~df~----rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWa 176 (846)
T KOG2066|consen 108 -----QYDFK----RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWA 176 (846)
T ss_pred -----eEecC----CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEec--CcEEEEe
Confidence 11111 35889999998 45566654433888876644433333333347899999995 7799988
Q ss_pred ecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecC
Q 001336 1002 FEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1065 (1097)
Q Consensus 1002 s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~ 1065 (1097)
+.+| |+|||+.+.+.+..+.++...+ ....++-.+.|.+ ...|+.|=.| +|++..+.
T Consensus 177 nd~G-v~vyd~~~~~~l~~i~~p~~~~---R~e~fpphl~W~~--~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 177 NDDG-VKVYDTPTRQRLTNIPPPSQSV---RPELFPPHLHWQD--EDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred cCCC-cEEEeccccceeeccCCCCCCC---CcccCCCceEecC--CCeEEEecCC-eEEEEEEe
Confidence 8777 9999999999988888665222 2233444567766 4677777666 68888887
No 336
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.16 E-value=0.0012 Score=73.68 Aligned_cols=299 Identities=11% Similarity=0.069 Sum_probs=152.5
Q ss_pred ccCCCEEEEeeeC-----CCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 001336 523 SADGARLFSCGTN-----KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA 597 (1097)
Q Consensus 523 s~~~~~l~~~~~~-----~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 597 (1097)
|||+++++..... .+....+.++|+.+++....... ...+....|+|+|+.++... ++.|++++..++...+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence 5788887774321 01234588999999866554444 23677899999999998887 4789999988874433
Q ss_pred EEecCCC----------------CCCcceEEEcCCCCEEEEEEC-CCcEEEEEc---CCCce---EEEEecccccccccc
Q 001336 598 SIDADGG----------------LQASPCIRFNKEGILLAVSTN-DNGIKILAN---ADGIR---LLRTVESRTFDASRV 654 (1097)
Q Consensus 598 ~~~~~~~----------------~~~v~~v~~s~~~~~l~s~~~-dg~i~iw~~---~~~~~---~~~~~~~~~~~~~~~ 654 (1097)
+...+. ...-..+.||||+++||.... +..|+.+.+ ..... ....+.-
T Consensus 78 -lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~Y-------- 148 (353)
T PF00930_consen 78 -LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRY-------- 148 (353)
T ss_dssp -SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE---------
T ss_pred -eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCccccccc--------
Confidence 332220 122357889999999987654 344444433 21111 1111110
Q ss_pred cccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCccccccccc--ccccccccccCCCceeeEec
Q 001336 655 ASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVE--KSRIWKLTEITEPSQCRSLR 732 (1097)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~~w~~~~~~~~~~~~~~~ 732 (1097)
-..|+..- .+.++++.+.... .+.
T Consensus 149 --------------------------------------------------Pk~G~~np~v~l~v~~~~~~~~~----~~~ 174 (353)
T PF00930_consen 149 --------------------------------------------------PKAGDPNPRVSLFVVDLASGKTT----ELD 174 (353)
T ss_dssp ---------------------------------------------------BTTS---EEEEEEEESSSTCCC----EE-
T ss_pred --------------------------------------------------CCCCCcCCceEEEEEECCCCcEE----Eee
Confidence 00111111 2333444332211 112
Q ss_pred cCC--CcCccceEEEEEccCCceeeeecc--C-cEEEEeccCCCCCCccCccccccCCcccCCCCCccccc--cCCCCCC
Q 001336 733 LPD--NLTAMRVSRLIYTNSGLAILALAS--N-AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTN--DISDTNP 805 (1097)
Q Consensus 733 ~~~--~~~~~~i~~l~~spdg~~l~~~~~--d-g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~--~~~~~~h 805 (1097)
.+. ......+..+.|.++++.++..-. + ..+.+.. .|..++..... .... +-
T Consensus 175 ~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~--------------------~d~~tg~~~~~~~e~~~-~W 233 (353)
T PF00930_consen 175 PPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVL--------------------CDASTGETRVVLEETSD-GW 233 (353)
T ss_dssp --HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEE--------------------EEECTTTCEEEEEEESS-SS
T ss_pred eccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEE--------------------EECCCCceeEEEEecCC-cc
Confidence 220 124567889999999984443332 2 2233321 12222221110 0000 01
Q ss_pred CCCeeEEEEc-cCCCEEEEEe--CC--eEEEEEcCCCceeEEeCCCCCCeEE-EEEeCCCCCEEEEEECCC----cEEEE
Q 001336 806 EDAVPCFALS-KNDSYVMSAS--GG--KISLFNMMTFKTMTTFMPPPPAATF-LAFHPQDNNIIAIGMEDS----SIQIY 875 (1097)
Q Consensus 806 ~~~v~~l~~s-~dg~~la~~s--dg--~i~iwd~~~~~~~~~~~~~~~~i~~-l~~sp~~~~~la~g~~dg----~v~vw 875 (1097)
-..-....|. +++..++..+ +| .|.+++..++. .+.+....-.|+. +.++++++.+..++..++ .|+.-
T Consensus 234 v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 234 VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence 1122345554 7777666555 55 47777776665 3455545556744 778884455555666533 45555
Q ss_pred EcccceEEEEecccccCeEEEEEecCCCEEEEEe
Q 001336 876 NVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSG 909 (1097)
Q Consensus 876 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~ 909 (1097)
++.++..+..+....+.-..+.|||+|++++-..
T Consensus 313 ~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 313 SLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp ETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred EeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 6662344556654444336899999999887543
No 337
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.00018 Score=82.01 Aligned_cols=205 Identities=16% Similarity=0.168 Sum_probs=131.0
Q ss_pred EEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccC-eEEEEEecCCCEEEEEeCCCc-----EEEEEcCCCcccc-
Q 001336 854 AFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR-ITGLAFSNTLNVLVSSGADSQ-----LCVWSTDGWEKQA- 926 (1097)
Q Consensus 854 ~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~l~s~~~Dg~-----i~iwd~~~~~~~~- 926 (1097)
+|++ ++..+|.|+.+|.|.+++ .+-+.++.++++... |+.+....+..+|++.++|+. |+||+++.-+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 3556 778999999999888877 334555788888777 555555555579999888865 8999998753222
Q ss_pred eeeE---ee---cCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEEEEeCCC--cceeeeeeccCCCCCEEEEEEecCCCE
Q 001336 927 SKFL---TI---PNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPK--LECLKQFVPREASGPITHATYSCDSQS 997 (1097)
Q Consensus 927 ~~~~---~~---~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~vwd~~~--~~~~~~~~~~~h~~~v~~v~~s~dg~~ 997 (1097)
..++ .+ ..+. ...++..++.|.+-+.+|+| .+|.|..+.-+- .+..+.-....-..+|+.+++-.|++.
T Consensus 108 P~c~~~~ri~~~~np~--~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPT--NPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred cceeeeeeeeccCCCC--CCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 2222 22 2221 22678999999998888988 788998885431 111111111123789999999999998
Q ss_pred EEEEecCCeEEEEeCCCCce-eeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCCCcccCC
Q 001336 998 IYVAFEEGSVGVLTASTLRL-RCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGT 1073 (1097)
Q Consensus 998 l~s~s~Dg~v~vwd~~~~~~-~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~~~~~~~ 1073 (1097)
++-+.....|.+|.+..... .+.+. .|...+. |.+|++..++ |++++. ..|.+|+.+..+.-|.-
T Consensus 186 ~lFv~Tt~~V~~y~l~gr~p~~~~ld-------~~G~~ln--Css~~~~t~q-fIca~~-e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLSGRTPSLKVLD-------NNGISLN--CSSFSDGTYQ-FICAGS-EFLYFYDSDGRGPCFAF 251 (933)
T ss_pred eEEEEecceeEEEEecCCCcceeeec-------cCCccce--eeecCCCCcc-EEEecC-ceEEEEcCCCcceeeee
Confidence 44445567899999884331 11122 2334444 4466664332 444433 35899998876665543
No 338
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.04 E-value=0.00012 Score=80.79 Aligned_cols=83 Identities=18% Similarity=0.321 Sum_probs=68.4
Q ss_pred CceEEEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEE
Q 001336 309 PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 388 (1097)
Q Consensus 309 ~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 388 (1097)
..-.+..+.....|.|++++|+.+. ++.|+.||.|++||...+.... ....-.++.++
T Consensus 249 qrvsvtsipL~s~v~~ca~sp~E~k-LvlGC~DgSiiLyD~~~~~t~~---------------------~ka~~~P~~ia 306 (545)
T PF11768_consen 249 QRVSVTSIPLPSQVICCARSPSEDK-LVLGCEDGSIILYDTTRGVTLL---------------------AKAEFIPTLIA 306 (545)
T ss_pred eEEEEEEEecCCcceEEecCcccce-EEEEecCCeEEEEEcCCCeeee---------------------eeecccceEEE
Confidence 3445556668999999999999996 4899999999999998774432 22445688999
Q ss_pred EccCCCEEEEEECCCEEEEEEccCC
Q 001336 389 WSPDGTLFGVAYSKHIVHLYTYHGG 413 (1097)
Q Consensus 389 ~spd~~~las~~~dg~i~iwd~~~~ 413 (1097)
|+|+|..+++|+..|.+.+||+.-.
T Consensus 307 WHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 307 WHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999999999999999999998654
No 339
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.01 E-value=0.0002 Score=79.05 Aligned_cols=137 Identities=15% Similarity=0.101 Sum_probs=96.0
Q ss_pred eeecCCCCceEEEEeecCCCeeEEEEccCCCeEEEEE----eCCCe----EEEEEcCCCceeeeeeeeEeeccccCcccc
Q 001336 302 SYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVG----TNMGD----VMLWEVGSRERIAVKSFKVWELGACSMPLQ 373 (1097)
Q Consensus 302 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~g----s~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (1097)
.+...+..-+.+....-+....++.||-...+.+.+- +.+|. -.+|++..++.... .+
T Consensus 188 L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrv-sv------------- 253 (545)
T PF11768_consen 188 LLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRV-SV------------- 253 (545)
T ss_pred EEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEE-EE-------------
Confidence 3333333455666666667778899987555444432 23443 35677765543221 11
Q ss_pred ccccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEE
Q 001336 374 ASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 453 (1097)
Q Consensus 374 ~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 453 (1097)
..-...+.|.|++++|+.+.|+.|+.||+|++||...+... +..+.-..+.++|+|+|. ++++|+..|.+.
T Consensus 254 --tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ 324 (545)
T PF11768_consen 254 --TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQ 324 (545)
T ss_pred --EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEE
Confidence 12246789999999999999999999999999999876322 223455688999999999 899999999999
Q ss_pred EEECCCCc
Q 001336 454 VWDAVTGT 461 (1097)
Q Consensus 454 iwd~~~~~ 461 (1097)
+||+.-..
T Consensus 325 ~FD~ALsp 332 (545)
T PF11768_consen 325 CFDMALSP 332 (545)
T ss_pred EEEeecCc
Confidence 99976543
No 340
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.00 E-value=0.00011 Score=84.16 Aligned_cols=185 Identities=14% Similarity=0.129 Sum_probs=141.1
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEE
Q 001336 442 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA 521 (1097)
Q Consensus 442 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 521 (1097)
.++-|+....+..+|+.+.+..+...-..+.|.-++. +++.+.+|...|+|.+-|.++.+....+..|.+.|..+
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf- 223 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF- 223 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceeee-
Confidence 5788888888999999998888777655555766653 44789999999999999999999999999999888764
Q ss_pred EccCCCEEEEeeeCCCC-----CceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCC-CEEEEEeCCCcEEEEECCC-Cc
Q 001336 522 YSADGARLFSCGTNKEG-----ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDN-VN 594 (1097)
Q Consensus 522 ~s~~~~~l~~~~~~~~~-----~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~ 594 (1097)
+-.|+.|++||.+... +..|.+||++..+.+..+.-+.+ -..+.|.|.- ..+++++..|...+-|..+ +.
T Consensus 224 -Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 -DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred -eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhcccccceEEEEecccceeeccccccCC
Confidence 5579999999976432 55689999998877766655543 2446677754 5788888899999988432 22
Q ss_pred e-EEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001336 595 L-LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 634 (1097)
Q Consensus 595 ~-~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~ 634 (1097)
+ ......+.....+..++++++++.+|.|..+|.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 2 222222223445889999999999999999999999973
No 341
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.97 E-value=0.00083 Score=75.34 Aligned_cols=81 Identities=10% Similarity=0.100 Sum_probs=59.2
Q ss_pred ecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001336 556 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 556 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~ 635 (1097)
+++.....+.--+++..+++++.|+.-|.+++|+...++....-. .+....+.....+++..++|.|+..|.|.++.+.
T Consensus 28 ~~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~-~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 28 QPGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN-EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred ccccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccc-cCccceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence 333333345555777888999999999999999988776554433 2334456677888888899999999999988765
Q ss_pred CC
Q 001336 636 DG 637 (1097)
Q Consensus 636 ~~ 637 (1097)
.+
T Consensus 107 ~~ 108 (726)
T KOG3621|consen 107 KE 108 (726)
T ss_pred cc
Confidence 43
No 342
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.00049 Score=78.17 Aligned_cols=186 Identities=13% Similarity=0.153 Sum_probs=123.9
Q ss_pred ceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCE
Q 001336 741 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY 820 (1097)
Q Consensus 741 ~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 820 (1097)
.+++.+++ ++.++.|+.+|.+.+++.+.. . ...+. |+.. ..+|.+
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~-----------------------~-~~~~~---~s~~------~~~Gey 85 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGN-----------------------P-KTNFD---HSSS------ILEGEY 85 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCc-----------------------c-ccccc---cccc------ccCCce
Confidence 34444444 667999999999999865521 0 00010 2222 568999
Q ss_pred EEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCC----CCCEEEEEECCCcEEEEEccc-c-eEEEEecccccCe
Q 001336 821 VMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ----DNNIIAIGMEDSSIQIYNVRV-D-EVKTKLKGHQKRI 893 (1097)
Q Consensus 821 la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~----~~~~la~g~~dg~v~vwd~~~-~-~~~~~l~~h~~~V 893 (1097)
+++++ ||+|.|-.+.+.+...++. -..++.+++++|+ ..+.+++|+.-| +.++.-.= | +.-..+..-.++|
T Consensus 86 ~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I 163 (846)
T KOG2066|consen 86 VASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPI 163 (846)
T ss_pred EEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccce
Confidence 99999 9999999998887766654 4568999999993 256788898888 77775321 1 1111455667899
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCC
Q 001336 894 TGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAP 969 (1097)
Q Consensus 894 ~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~ 969 (1097)
.++.|. |+++|-++.+| |++||+.+++.... ++.+........-...+.|.++.+ |+.|-..+|+|..+.
T Consensus 164 ~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~--i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 164 HSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTN--IPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred EEEEec--CcEEEEecCCC-cEEEeccccceeec--cCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 999995 88999988877 99999988653221 111221111113345677887765 555666678887776
No 343
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.96 E-value=0.011 Score=68.93 Aligned_cols=110 Identities=14% Similarity=0.091 Sum_probs=66.7
Q ss_pred cEEEEEcCCCeEEEEEcCCCCceeeecCCCC------ce--EEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEe
Q 001336 485 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGH------SS--TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY 556 (1097)
Q Consensus 485 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~v--~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 556 (1097)
..++.++.++.|.-.|..+++.......... .+ ..+.+. ++..++.+.. ++.|.-+|.++|+.+-.+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence 4577777788888888888877776554332 00 011111 2245555543 446999999999988776
Q ss_pred cCCCCc----ceE-EEEEcCCCCEEEEEe---------CCCcEEEEECCCCceEEEEec
Q 001336 557 HGLGKR----SVG-VVQFDTTKNRFLAAG---------DEFMIKFWDMDNVNLLASIDA 601 (1097)
Q Consensus 557 ~~~~~~----~v~-~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~ 601 (1097)
...... .+. ...+. +..++.++ .+|.|+.+|..+|+.+-....
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 543220 011 11222 24455553 368899999999998887754
No 344
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.95 E-value=0.01 Score=68.23 Aligned_cols=250 Identities=14% Similarity=0.107 Sum_probs=138.7
Q ss_pred eeEEEEccCCCeEEEEEeCCC----eEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 322 VKSMDFHPVQQILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 322 V~~v~fspdg~~lla~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
+....+||||++++.+-+..| .++|.|+.+|+.+.. .+. ...-..+.|.+|++.|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i~-------------------~~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GIE-------------------NPKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EEE-------------------EEESEEEEECTTSSEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-ccc-------------------ccccceEEEeCCCCEEE
Confidence 336789999998876655555 599999999976642 111 11123499999998877
Q ss_pred EEECCC-----------EEEEEEccCCeeeeeeeeeecccCc--EEEEEEecCCCcEEEEEEeCC---CcEEEEECCCC-
Q 001336 398 VAYSKH-----------IVHLYTYHGGDELRNHLEIEAHVGS--VNDLAFSYPNKQLSVVTCGED---RVIKVWDAVTG- 460 (1097)
Q Consensus 398 s~~~dg-----------~i~iwd~~~~~~~~~~~~l~~h~~~--V~~l~~s~d~~~~~l~s~s~d---~~i~iwd~~~~- 460 (1097)
....+. .|+.|++.++..-. ...+.+.... ...+..++|++.+ ++..... ..+.+.|+..+
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l-~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYL-FISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEE-EEEEESSSSEEEEEEEECCCTT
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEE-EEEEEccccCCeEEEEeccccC
Confidence 765332 47788877654221 1124443333 6788999999963 3333332 35888888775
Q ss_pred ---ceeEEeecCCcCeE-EEeecccCCccEEEEEc---CCCeEEEEEcCCCCc---eeeecCCCCceEEEEEccCCCEEE
Q 001336 461 ---TKQYIFEGHESPVY-SICPHHKENIQFIFSTA---TDGKIKAWLYDNLGS---RVDYDAPGHSSTMMAYSADGARLF 530 (1097)
Q Consensus 461 ---~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~ 530 (1097)
.....+......+. .+.. . ++.+++... .++.|...++..... ...+..+...+.-..+...+++|+
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~-~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDH-H--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLV 340 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEE-E--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEc-c--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEE
Confidence 23333333333343 3332 2 223444332 346677777776653 223334443333333344566666
Q ss_pred EeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEE--Ee--CCCcEEEEECCCCceEE
Q 001336 531 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLA--AG--DEFMIKFWDMDNVNLLA 597 (1097)
Q Consensus 531 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~--~dg~i~iwd~~~~~~~~ 597 (1097)
..... ++...|.++++..+...........+.+..+...++++.+.. .| .-++++.||+.+++...
T Consensus 341 l~~~~-~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 341 LSYRE-NGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEEE-TTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEEEE-CCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 65543 457789999999455555554444435666665565554333 23 45678889998887543
No 345
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.91 E-value=0.0069 Score=70.68 Aligned_cols=247 Identities=11% Similarity=0.107 Sum_probs=143.4
Q ss_pred CEEEEEe-CCeEEEEEcCCCceeEEeCCCCCC-----e-EEEEEeCCCCCEEEEEE---------CCCcEEEEEcccceE
Q 001336 819 SYVMSAS-GGKISLFNMMTFKTMTTFMPPPPA-----A-TFLAFHPQDNNIIAIGM---------EDSSIQIYNVRVDEV 882 (1097)
Q Consensus 819 ~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~-----i-~~l~~sp~~~~~la~g~---------~dg~v~vwd~~~~~~ 882 (1097)
..++.++ ++.|.-+|.++|+.+..+...... + ....+. + .++++++ .+|.+.-+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 4555555 899999999999998887643321 2 222333 2 3455554 367899999999998
Q ss_pred EEEeccccc--------------------Ce-EEEEEecCCCEEEEEeCCC------------------cEEEEEcCCCc
Q 001336 883 KTKLKGHQK--------------------RI-TGLAFSNTLNVLVSSGADS------------------QLCVWSTDGWE 923 (1097)
Q Consensus 883 ~~~l~~h~~--------------------~V-~~l~~s~dg~~l~s~~~Dg------------------~i~iwd~~~~~ 923 (1097)
+-++..... .| ...++.+.+..++.++.|+ .|.-+|.++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 876643211 11 1234445566777777665 68888888877
Q ss_pred ccceeeEeecCCCCCC----ccCCeEEEE-cCCCc---EEEE-EeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecC
Q 001336 924 KQASKFLTIPNGRTAS----ALADTRVQF-HLDQT---HLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCD 994 (1097)
Q Consensus 924 ~~~~~~~~~~~~~~~~----~~~v~~l~~-s~dg~---~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~d 994 (1097)
.. +.. +.. .+... .....-... .-+|. .+++ +.+|.+...|.++|+.+-..... ...++.++
T Consensus 268 ~~-W~~-~~~-~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~- 338 (488)
T cd00216 268 VK-WFY-QTT-PHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP- 338 (488)
T ss_pred EE-EEe-eCC-CCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC-
Confidence 32 111 111 11000 000000011 12343 3444 46899999999999988766421 11233343
Q ss_pred CCEEEEE------------------ecCCeEEEEeCCCCceeeeeCCCCcCCCC-CCCce--eeEEEEEcCCCCCEEEEE
Q 001336 995 SQSIYVA------------------FEEGSVGVLTASTLRLRCRINPTAYLPTN-PSLRV--YPLVIAGNPTDPNQFALG 1053 (1097)
Q Consensus 995 g~~l~s~------------------s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~-h~~~v--~~l~i~~~p~~~~~l~s~ 1053 (1097)
..+..+ ..+|.+.-.|+.+|+.+.+.......... -.... .++.+ .+.+++.+
T Consensus 339 -~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-----~g~~v~~g 412 (488)
T cd00216 339 -GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-----AGNLVFAG 412 (488)
T ss_pred -ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-----cCCeEEEE
Confidence 222222 23578888999999888776643110000 00001 12222 35788889
Q ss_pred ecCCcEEEEecCCCCcccCCCCCCCCCCCC
Q 001336 1054 LTDGGVYIIEPLEAEGRWGTSPPNENGAGP 1083 (1097)
Q Consensus 1054 ~~Dg~v~~W~~~~~~~~~~~~~~~~~~~~~ 1083 (1097)
+.||.|+.+|..+++..|...-|....+.|
T Consensus 413 ~~dG~l~ald~~tG~~lW~~~~~~~~~a~P 442 (488)
T cd00216 413 AADGYFRAFDATTGKELWKFRTPSGIQATP 442 (488)
T ss_pred CCCCeEEEEECCCCceeeEEECCCCceEcC
Confidence 999999999999999999987655444444
No 346
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.0022 Score=72.00 Aligned_cols=193 Identities=15% Similarity=0.139 Sum_probs=120.8
Q ss_pred eecccCcEEEEEEecCCCcEEEEEEeCCC--cEEEEECCCCceeEEe--ecCCcCeEEEeecccCCccE-EEEEcCCCeE
Q 001336 422 IEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIF--EGHESPVYSICPHHKENIQF-IFSTATDGKI 496 (1097)
Q Consensus 422 l~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~-l~s~~~dg~i 496 (1097)
+..-...+..-+|+|+++.+..++-...+ .+.++|+.+++....+ .++. ..-.| ++||+. +++...||..
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~f--spDG~~l~f~~~rdg~~ 262 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAF--SPDGSKLAFSSSRDGSP 262 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccC--CCCCCEEEEEECCCCCc
Confidence 33344567778999999964333333333 5999999988765544 3333 23355 455554 4566677776
Q ss_pred EEE--EcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCC
Q 001336 497 KAW--LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN 574 (1097)
Q Consensus 497 ~iw--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 574 (1097)
.+| |+.... ...+....+.-..-.|+|||+.++..+ |..+...|.+++.+.+...+....... -..-.++|+|+
T Consensus 263 ~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~~riT~~~~~--~~~p~~SpdG~ 338 (425)
T COG0823 263 DIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQVTRLTFSGGG--NSNPVWSPDGD 338 (425)
T ss_pred cEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCceeEeeccCCC--CcCccCCCCCC
Confidence 666 555444 222333333334778999999999986 556777899999887765333322222 22678999999
Q ss_pred EEEEEeC-CCc--EEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECC
Q 001336 575 RFLAAGD-EFM--IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 626 (1097)
Q Consensus 575 ~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d 626 (1097)
+++..+. +|. |.+.++.++..+..+.. ......-.|.+++..+...+..
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~---~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILTS---TYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEccc---cccCCCCCcCCCCceEEEeccC
Confidence 9988874 344 67777776665555543 2233466788888877765544
No 347
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.86 E-value=0.0062 Score=67.76 Aligned_cols=241 Identities=13% Similarity=0.074 Sum_probs=136.6
Q ss_pred CeEEEEEccCCCEEEEEECCCEEEEEEccCCeee----------------------------------------eeeeee
Q 001336 383 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDEL----------------------------------------RNHLEI 422 (1097)
Q Consensus 383 ~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~----------------------------------------~~~~~l 422 (1097)
.|+++.|+++...||+|...|.|.||.+...+.. .+..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 6899999999999999999999999977533211 111123
Q ss_pred ecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEe--ec------CCcCeEEEeec---ccCCc---cEEE
Q 001336 423 EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF--EG------HESPVYSICPH---HKENI---QFIF 488 (1097)
Q Consensus 423 ~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~------h~~~v~~~~~~---~~~~~---~~l~ 488 (1097)
....++|++++.|.-| +++.|..+|.+.|.|++....++.- .. ....|+++.|. ...|+ -.++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 3346889999998655 7999999999999999888877652 22 23457777664 23333 5788
Q ss_pred EEcCCCeEEEEEcCC-CCceee------ecCCCCceEEEE-EccC---------------------CCEEEEeeeCCCCC
Q 001336 489 STATDGKIKAWLYDN-LGSRVD------YDAPGHSSTMMA-YSAD---------------------GARLFSCGTNKEGE 539 (1097)
Q Consensus 489 s~~~dg~i~iwd~~~-~~~~~~------~~~~~~~v~~~~-~s~~---------------------~~~l~~~~~~~~~~ 539 (1097)
+|...|.+.+|.+.- ...... ...+...+..+. ++.+ ..++++++ +
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-----e 234 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-----E 234 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE------S
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-----c
Confidence 899999999997752 221111 112333444333 3211 11444444 3
Q ss_pred ceEEEEeCCCCeeeEEecCCCCcceEEEEEc-----CCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC--CCCcceEE
Q 001336 540 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFD-----TTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG--LQASPCIR 612 (1097)
Q Consensus 540 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~ 612 (1097)
..++++...+.+...+...... ....+++- ..+..|++-..+|.|+++.+-.-+.+..+..... ...+....
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~-~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPF-LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-E-EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred cceEEEeCCCCcccceeecccc-ccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 3599999888776665552211 33334442 3456788888999999999999998888876421 12345677
Q ss_pred EcCCCCEEEEEECCCcEEEEE
Q 001336 613 FNKEGILLAVSTNDNGIKILA 633 (1097)
Q Consensus 613 ~s~~~~~l~s~~~dg~i~iw~ 633 (1097)
++++|..++-.+.. .+.++.
T Consensus 314 is~~Gdi~~~~gps-E~~l~s 333 (395)
T PF08596_consen 314 ISRNGDIFYWTGPS-EIQLFS 333 (395)
T ss_dssp E-TTS-EEEE-SSS-EEEEEE
T ss_pred ECCCCCEEEEeCcc-cEEEEE
Confidence 78888866665543 344433
No 348
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.83 E-value=0.0042 Score=69.08 Aligned_cols=253 Identities=14% Similarity=0.156 Sum_probs=132.1
Q ss_pred CeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceee------e------------eeeeEeeccccCc------cccccc
Q 001336 321 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIA------V------------KSFKVWELGACSM------PLQASL 376 (1097)
Q Consensus 321 ~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~------~------------~~~~~~~~~~~~~------~~~~~~ 376 (1097)
.|+++.|+++..-| ++|...|.|.||.+..++.-. . ..-++.|+..... -.+..+
T Consensus 3 ~v~~vs~a~~t~El-av~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLEL-AVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEE-EEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceE-EEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 58899999997754 899999999999986543221 0 0112333322111 122334
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeec------ccCcEEEEEEec-----CC-CcEEEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEA------HVGSVNDLAFSY-----PN-KQLSVV 444 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~------h~~~V~~l~~s~-----d~-~~~~l~ 444 (1097)
+....++|++++.| |=-++|.|..+|.+.|.|++....+.. ..+.. ....|+++.|+- |+ ..+.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 56668999999998 666999999999999999987765543 22333 344688898872 22 224788
Q ss_pred EEeCCCcEEEEECC-C--Ccee----EEeecCCcCeEEEeecccCCc-------------------cEEEEEcCCCeEEE
Q 001336 445 TCGEDRVIKVWDAV-T--GTKQ----YIFEGHESPVYSICPHHKENI-------------------QFIFSTATDGKIKA 498 (1097)
Q Consensus 445 s~s~d~~i~iwd~~-~--~~~~----~~~~~h~~~v~~~~~~~~~~~-------------------~~l~s~~~dg~i~i 498 (1097)
.|...|.+.+|.+. . +... .....+.++|..+..-...+| .-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 99999999999764 1 2221 122246677766653211111 12333344688999
Q ss_pred EEcCCCCceeeecCCCCceEEEEEc-----cCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCC---cceEEEEEc
Q 001336 499 WLYDNLGSRVDYDAPGHSSTMMAYS-----ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK---RSVGVVQFD 570 (1097)
Q Consensus 499 wd~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~~ 570 (1097)
+...+.+...+..........+.+- ..+..|++... ++.++++.+..-+.+..+.-... ..+...+++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9887766655554222233344442 24445555543 44699999998887776655321 123335566
Q ss_pred CCCCEEEEEe
Q 001336 571 TTKNRFLAAG 580 (1097)
Q Consensus 571 ~~~~~l~~~~ 580 (1097)
++|..++-.+
T Consensus 316 ~~Gdi~~~~g 325 (395)
T PF08596_consen 316 RNGDIFYWTG 325 (395)
T ss_dssp TTS-EEEE-S
T ss_pred CCCCEEEEeC
Confidence 6666555444
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.81 E-value=0.0037 Score=70.48 Aligned_cols=219 Identities=18% Similarity=0.170 Sum_probs=118.3
Q ss_pred CCCeeEEEEccCCCEEEEEeCCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEE
Q 001336 806 EDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK 885 (1097)
Q Consensus 806 ~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~ 885 (1097)
......+.++|+|++++++++|...|+.....+.... +.-...+|.+ .+ .+|+-...+.|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n-~yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RN-RYAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SS-EEEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Cc-cEEEEECCCeEEEEEcCccccceE
Confidence 3447889999999999999999999998655444332 3456688987 55 466677788999974322222223
Q ss_pred ecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEE
Q 001336 886 LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAI 965 (1097)
Q Consensus 886 l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~v 965 (1097)
++.. ..+..+-. |.+|...+.+ .|.+||..+++. +....- ..|..+.|+++|.+++...+..+.|
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~-----i~~i~v-----~~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKL-----IRRIDV-----SAVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--E-----EEEESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcce-----eeEEec-----CCCcEEEEECCCCEEEEEeCCeEEE
Confidence 3321 12344333 8888877655 799999998652 222211 2378999999999999988889999
Q ss_pred EeCCCc-----------ceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCc--eeeeeCCCCcCCCCCC
Q 001336 966 YEAPKL-----------ECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLR--LRCRINPTAYLPTNPS 1032 (1097)
Q Consensus 966 wd~~~~-----------~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~--~~~~~~~~~~~~~~h~ 1032 (1097)
++.+.. +.+..+. .-...|.+.+|..| -++.| +.. .++.+ ..|+ .++.+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~--E~~~~IkSg~W~~d-~fiYt-T~~-~lkYl--~~Ge~~~i~~ld---------- 232 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIH--EISERIKSGCWVED-CFIYT-TSN-HLKYL--VNGETGIIAHLD---------- 232 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEE--EE-S--SEEEEETT-EEEEE--TT-EEEEE--ETTEEEEEEE-S----------
T ss_pred EEecchhcccccccCchhceEEEE--EecceeEEEEEEcC-EEEEE-cCC-eEEEE--EcCCcceEEEcC----------
Confidence 887644 0112221 11468889999877 33443 333 67663 3333 233333
Q ss_pred CceeeEEEEEcCCCCCEEEEEecCCcEEEEecCC
Q 001336 1033 LRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1066 (1097)
Q Consensus 1033 ~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~ 1066 (1097)
..++-+ .+.| ..+.+.....|+.|..+.++-
T Consensus 233 ~~~yll--gy~~-~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 233 KPLYLL--GYLP-KENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp S--EEE--EEET-TTTEEEEE-TT--EEEEE--H
T ss_pred CceEEE--EEEc-cCCEEEEEECCCCEEEEEECH
Confidence 223444 4445 357888888999998887764
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.80 E-value=0.012 Score=60.48 Aligned_cols=191 Identities=7% Similarity=0.111 Sum_probs=112.3
Q ss_pred CCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEE
Q 001336 319 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 398 (1097)
Q Consensus 319 ~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 398 (1097)
...++.++|+|+...|+++....+.|...+.+ |+.+.... +.+ .+..-.|++.-++.++++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVLS 81 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEEE
Confidence 45699999999988899999999999999974 66665422 233 356778888888888887
Q ss_pred EECCCEEEEEEccCCee---eee--eeeee---cccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCC---CceeEEe-
Q 001336 399 AYSKHIVHLYTYHGGDE---LRN--HLEIE---AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT---GTKQYIF- 466 (1097)
Q Consensus 399 ~~~dg~i~iwd~~~~~~---~~~--~~~l~---~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~---~~~~~~~- 466 (1097)
--+++.+.+.++..... ... ...+. .+...+..++|.+.++. |+.+-......++.+.. +..+...
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeecc
Confidence 77799999999843211 111 11111 35567999999999884 55556666666665543 2222111
Q ss_pred -------ecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCC---------CceEEEEEccCCCEEE
Q 001336 467 -------EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG---------HSSTMMAYSADGARLF 530 (1097)
Q Consensus 467 -------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~ 530 (1097)
......+.++++++. .+.+++.......|..+| ..++....+.... .....++|.++|+..+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred ccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 123345778888765 457888888889999998 3445444433332 2578899999997776
Q ss_pred Ee
Q 001336 531 SC 532 (1097)
Q Consensus 531 ~~ 532 (1097)
+.
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 65
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.80 E-value=0.013 Score=66.34 Aligned_cols=199 Identities=14% Similarity=0.159 Sum_probs=110.5
Q ss_pred EEEccCCCEEEEEeCC------------eEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEccc
Q 001336 812 FALSKNDSYVMSASGG------------KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV 879 (1097)
Q Consensus 812 l~~s~dg~~la~~sdg------------~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~ 879 (1097)
++.+|.|..+|...|. .|+||+. .|+.+..+.-..+.|.++.|+. +. .|++-..||.+++||+.
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~- 109 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLF- 109 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCC-
Confidence 4556666666666543 5899987 5666666544448999999997 54 55566789999999986
Q ss_pred ceE-------EEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCC--CccCCeE-EEEc
Q 001336 880 DEV-------KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTA--SALADTR-VQFH 949 (1097)
Q Consensus 880 ~~~-------~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~-l~~s 949 (1097)
|+. +....-....+....+..+|-.+.+ .++.+.+-+--............+..... ....... ..++
T Consensus 110 G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 110 GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred CceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEee
Confidence 333 1111222233333344446633333 34444433222211000000011111110 0001111 3345
Q ss_pred CCCcEEEE-EeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeC
Q 001336 950 LDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRIN 1022 (1097)
Q Consensus 950 ~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~ 1022 (1097)
.+....+. ..++.+.+.+....+. + ...+++..+++||+|++||.-..+|.+.|...+-.+..+.+.
T Consensus 188 ~~~~~~i~~~~g~~i~~i~~~~~~~---i---~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 188 SDRVVEILLANGETIYIIDENSFKQ---I---DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred cCcceEEEEecCCEEEEEEcccccc---c---cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 55544444 4556666444432211 1 124689999999999999999999999998877666666665
No 352
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.79 E-value=0.15 Score=59.81 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=42.2
Q ss_pred CeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEeccc
Q 001336 827 GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGH 889 (1097)
Q Consensus 827 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h 889 (1097)
|.|.=+|+.+++.+................ .+.+++.++.||.++.+|.++|+.+.+.+-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 457778888888877665332222222222 3457777888999999999999999877654
No 353
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.78 E-value=0.0018 Score=72.92 Aligned_cols=222 Identities=10% Similarity=0.120 Sum_probs=118.0
Q ss_pred cceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCC
Q 001336 740 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS 819 (1097)
Q Consensus 740 ~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 819 (1097)
.....+.++|+|+.+++ ..+|...||.... ... ...+.-...+|.+.++
T Consensus 33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~----------------------~r~--------k~~G~g~~~vw~~~n~ 81 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALA----------------------WRN--------KAFGSGLSFVWSSRNR 81 (443)
T ss_dssp S--SEEEE-TTSSEEEE-EETTEEEEEETTT----------------------TEE--------EEEEE-SEEEE-TSSE
T ss_pred cCCeeEEECCCCCEEEE-EcCCEEEEEEccC----------------------Ccc--------cccCceeEEEEecCcc
Confidence 34678999999998888 5567777764110 000 0224446688999666
Q ss_pred EEEEEeCCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEe
Q 001336 820 YVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS 899 (1097)
Q Consensus 820 ~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s 899 (1097)
+.+.-..++|.|+.--+.+....++.. ..+..+- .|.+|...+.+ .|.+||..+++.++++... +|..+.|+
T Consensus 82 yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If----~G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws 153 (443)
T PF04053_consen 82 YAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIF----GGNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS 153 (443)
T ss_dssp EEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred EEEEECCCeEEEEEcCccccceEEcCC-cccceEE----cCcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence 444444788999743233332344322 2344443 26777777654 8999999999999998744 38999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCC---------cccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCC
Q 001336 900 NTLNVLVSSGADSQLCVWSTDGW---------EKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPK 970 (1097)
Q Consensus 900 ~dg~~l~s~~~Dg~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~ 970 (1097)
++|.+++..+.+ .+.|++.+.. -......+ .+-. ..|.+.+|..| -++.++ .+.++. +-.
T Consensus 154 ~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~--~E~~----~~IkSg~W~~d-~fiYtT-~~~lkY--l~~ 222 (443)
T PF04053_consen 154 DDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI--HEIS----ERIKSGCWVED-CFIYTT-SNHLKY--LVN 222 (443)
T ss_dssp TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE--EEE-----S--SEEEEETT-EEEEE--TTEEEE--EET
T ss_pred CCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE--EEec----ceeEEEEEEcC-EEEEEc-CCeEEE--EEc
Confidence 999999999866 4888776543 00011111 1101 35888999888 444444 336666 333
Q ss_pred cce--eeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCc
Q 001336 971 LEC--LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLR 1016 (1097)
Q Consensus 971 ~~~--~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~ 1016 (1097)
|+. +..+ ..++.=+.+.+....+.....|+.|..+.++...
T Consensus 223 Ge~~~i~~l-----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 223 GETGIIAHL-----DKPLYLLGYLPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp TEEEEEEE------SS--EEEEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred CCcceEEEc-----CCceEEEEEEccCCEEEEEECCCCEEEEEECHHH
Confidence 333 2222 4567777788877788888888888888776543
No 354
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=97.73 E-value=4.8e-05 Score=74.18 Aligned_cols=130 Identities=18% Similarity=0.254 Sum_probs=89.3
Q ss_pred hhhhhhcccChHHHHHHhccccc--cCCccccceeeehhhHhhhhHHHhcCChhHHHHHHHhccccccccChHHHHHHHH
Q 001336 3 YFEDMVTNGEWDEVEKYLSGFTK--VDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQ 80 (1097)
Q Consensus 3 ~~~~~i~~g~w~~~~~~l~~~~~--~~~~~~~~~~~~~i~~q~~~E~l~~~~~~~a~~~l~~~l~~l~~~~~~~~~~l~~ 80 (1097)
..|.+|..|+-++|+..+..+.+ ++.+ .. +.|.+.+|+++|++..+...+|+.|++++|.|+...+...++.|..
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n--~~-l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~ 146 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLNPEILDTN--RE-LFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELER 146 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhChHHHccc--hh-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHH
Confidence 46889999999999999998843 2322 22 7899999999999999999999999999999997777666666655
Q ss_pred hh---ccccccchhhhhccCCchHHHHHHHHHHHhhcccCcCcccccCCCCCchhHHHHHHhhchhhh
Q 001336 81 LL---TLENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLNWQ 145 (1097)
Q Consensus 81 ll---~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~i~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q 145 (1097)
.| ..+.....+...-| ....|.++.+.++..|=...- . --..+|..||+.-+..|
T Consensus 147 ~l~lLvf~~~~~sp~~~l~--~~s~R~kvA~~vN~aiL~~~~---~-----~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 147 TLALLVFELSQESPSAELL--SQSLRQKVASEVNSAILASQE---H-----ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHHHHcCCcccCcHHHHH--HHHHHHHHHHHHHHHHHHHhc---c-----cccchHHHHHHHHHHHH
Confidence 44 44322222221111 234577888888877733111 0 11457888885554444
No 355
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.68 E-value=0.0034 Score=70.48 Aligned_cols=189 Identities=12% Similarity=0.138 Sum_probs=113.0
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCC---CeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCC
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNM---GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT 394 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~ 394 (1097)
....+..-+|+|+++.+....-.. ..+.++|+++++.....+ -.+.-..-+|||||+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~~P~fspDG~ 250 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNGAPAFSPDGS 250 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccCCccCCCCCC
Confidence 567788899999999875554333 359999999887544211 223344578999999
Q ss_pred EEEEEE-CCCE--EEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCC--cEEEEECCCCceeEEeecC
Q 001336 395 LFGVAY-SKHI--VHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIFEGH 469 (1097)
Q Consensus 395 ~las~~-~dg~--i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~h 469 (1097)
+||.+. .||. |.+.|+.++.. .+ +..-.+.-+.=.|+|||+. ++.+.+..| .|.+.|++.+...+ +...
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~-~~---Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~ 324 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNL-PR---LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQVTR-LTFS 324 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCcc-ee---cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCceeE-eecc
Confidence 887764 4564 66667777663 22 3333333336789999996 344455555 46666765555432 2222
Q ss_pred CcCeEEEeecccCCccEEEEEcC-CCe--EEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeC
Q 001336 470 ESPVYSICPHHKENIQFIFSTAT-DGK--IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 535 (1097)
Q Consensus 470 ~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 535 (1097)
.+.-..-.+ ++||++++..+. +|. |.+.|+.+... ..............+.++|+.++..+..
T Consensus 325 ~~~~~~p~~--SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 325 GGGNSNPVW--SPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCCCcCccC--CCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEeccC
Confidence 211112333 677778777664 344 55555555443 2222233344566788899888877643
No 356
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.67 E-value=0.0084 Score=70.46 Aligned_cols=216 Identities=11% Similarity=0.034 Sum_probs=115.9
Q ss_pred CCCeEEEEEeCCCCCEEEEEE------CCC--cEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCC-CcEEEE
Q 001336 847 PPAATFLAFHPQDNNIIAIGM------EDS--SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGAD-SQLCVW 917 (1097)
Q Consensus 847 ~~~i~~l~~sp~~~~~la~g~------~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~D-g~i~iw 917 (1097)
...+...+++| +++.+|... .|. .|.+++. .+.......+. ..+.-.|+|||..|++.... ..+++.
T Consensus 349 ~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 349 MGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence 34678999999 777776655 244 4555554 23322223332 37888999999988877543 222222
Q ss_pred EcCCCcccceeeEeecCCCC--CCccCCeEEEEcCCCcEEEEEeCCeEEE---EeCCCcceee----eeeccCCCCCEEE
Q 001336 918 STDGWEKQASKFLTIPNGRT--ASALADTRVQFHLDQTHLLAVHETQIAI---YEAPKLECLK----QFVPREASGPITH 988 (1097)
Q Consensus 918 d~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~s~dg~~l~~~~d~~v~v---wd~~~~~~~~----~~~~~~h~~~v~~ 988 (1097)
+-.... ....+.+..+.. .....|..+.|||||..++...+++|++ -....|+... .+. .+-...+.+
T Consensus 425 ~~~~~g--ql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~-~~l~~~~~~ 501 (591)
T PRK13616 425 RDPATG--QLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVG-PGLGDTAVS 501 (591)
T ss_pred ccCCCc--eEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEee-cccCCcccc
Confidence 221100 000011111000 1124699999999999999976788887 5545554111 111 122334688
Q ss_pred EEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCCC
Q 001336 989 ATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1068 (1097)
Q Consensus 989 v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~~ 1068 (1097)
+.|..++.++ ++..++...+|.+.-.-......... +....+..+ +-.+ ..++....+|.+.+=.-....
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~----n~~~~v~~v--aa~~---~~iyv~~~~g~~~l~~~~~~~ 571 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSR----NLSAPVVAV--AASP---STVYVTDARAVLQLPNSDSGD 571 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEEEecCCccccccCCC----CccCceEEE--ecCC---ceEEEEcCCceEEecCCCCCC
Confidence 9999999965 55555555566643221111111111 123445444 4333 356666777744433333445
Q ss_pred cccCCCCCCCC
Q 001336 1069 GRWGTSPPNEN 1079 (1097)
Q Consensus 1069 ~~~~~~~~~~~ 1079 (1097)
..|...|+-.+
T Consensus 572 ~~W~ev~~l~g 582 (591)
T PRK13616 572 QYWREVPGLMG 582 (591)
T ss_pred CCceECccccC
Confidence 67987776544
No 357
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.64 E-value=2e-05 Score=86.50 Aligned_cols=205 Identities=14% Similarity=0.219 Sum_probs=130.5
Q ss_pred cCCCeeEEEEccCCC-eEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc-CCCE
Q 001336 318 QGSAVKSMDFHPVQQ-ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTL 395 (1097)
Q Consensus 318 h~~~V~~v~fspdg~-~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~ 395 (1097)
....+.|++++-+.+ .|+++|..+|.|.+-.+....--. ..+..+|....++++|++ |.+.
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs-----------------~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS-----------------AEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCccccc-----------------ceecccccccccccccccccHHH
Confidence 445677888776554 688999999999998876533210 112457888999999999 7778
Q ss_pred EEEEE----CCCEEEEEEccCCeee-eeeeeeec-ccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCce-eEEeec
Q 001336 396 FGVAY----SKHIVHLYTYHGGDEL-RNHLEIEA-HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QYIFEG 468 (1097)
Q Consensus 396 las~~----~dg~i~iwd~~~~~~~-~~~~~l~~-h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~ 468 (1097)
||+|- .|..+.|||+.++-.+ +....+.+ ......+++|..+.+ ++++|...+.+.++|++.... ...+
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv-- 193 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV-- 193 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--
Confidence 88873 3567999999886211 11111222 344566889998887 789999999999999873321 1112
Q ss_pred CCcCeEEEeecccCCccEEEEEcCCCeEEEEE-cCCCCceeeecCC-----CCceEEEEEccCCCE-EEEeeeCCCCCce
Q 001336 469 HESPVYSICPHHKENIQFIFSTATDGKIKAWL-YDNLGSRVDYDAP-----GHSSTMMAYSADGAR-LFSCGTNKEGESY 541 (1097)
Q Consensus 469 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~-l~~~~~~~~~~~~ 541 (1097)
.+..+..+.+.|- .++++++-. ||.|-+|| ...-+.......+ ...+..++|.|...- +++...+ ..+
T Consensus 194 nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd---S~t 268 (783)
T KOG1008|consen 194 NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD---SIT 268 (783)
T ss_pred hhhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC---cce
Confidence 2223444555431 225666555 99999999 4433332222222 125889999996654 3444332 457
Q ss_pred EEEEeCC
Q 001336 542 LVEWNES 548 (1097)
Q Consensus 542 i~~wd~~ 548 (1097)
|+++|+.
T Consensus 269 Irlydi~ 275 (783)
T KOG1008|consen 269 IRLYDIC 275 (783)
T ss_pred EEEeccc
Confidence 8888875
No 358
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.017 Score=65.02 Aligned_cols=209 Identities=13% Similarity=0.145 Sum_probs=146.4
Q ss_pred CeeEEEEccCCCEEEEEe--CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEEC---CCcEEEEEcccceE
Q 001336 808 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME---DSSIQIYNVRVDEV 882 (1097)
Q Consensus 808 ~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~---dg~v~vwd~~~~~~ 882 (1097)
....+++++++..+.... ++.|.+.|..+.+....... ......+++++ +++.+.++.. ++++.+.|..+++.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-ccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE
Confidence 345678889988666655 68999999877777666542 22677899999 6655555544 68999999998888
Q ss_pred EEEecccccCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeC-
Q 001336 883 KTKLKGHQKRITGLAFSNTLNVLVSSG-ADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHE- 960 (1097)
Q Consensus 883 ~~~l~~h~~~V~~l~~s~dg~~l~s~~-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d- 960 (1097)
+.....-..+ ..++++|+|..++.+. .++.|.+.|........ .. .............+.++++|.++.+..+
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~---~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS---VGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc---cccccccCCCCceEEECCCCCEEEEEecc
Confidence 7775544445 8899999999666554 78899999977744221 00 0000111134577999999998877422
Q ss_pred ---CeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEec-CCeEEEEeCCCCceeeeeCCC
Q 001336 961 ---TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFE-EGSVGVLTASTLRLRCRINPT 1024 (1097)
Q Consensus 961 ---~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~-Dg~v~vwd~~~~~~~~~~~~~ 1024 (1097)
+.+...|..++.....-...+-. ....+.++|+|+.+.+... .+.+.+-|..+......+...
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 58999999988877662221222 5667899999999887744 488999999888777665533
No 359
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.60 E-value=0.028 Score=57.93 Aligned_cols=202 Identities=10% Similarity=0.054 Sum_probs=112.6
Q ss_pred CCCCeeEEEEccCCCEEEEEe--CCeEEEEEcCCCceeEEeCCC-CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccc-
Q 001336 805 PEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPP-PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD- 880 (1097)
Q Consensus 805 h~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~- 880 (1097)
-...+..++|.|+.+.|++.. .+.|.-++. +|+.++.+.-. .+..-.+++.. ++.++++--.++.+.++++...
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEeccc
Confidence 455699999999877666555 577877886 57888776533 35688899986 6766666556899999998432
Q ss_pred -----eEEEEec-----ccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCC--C-cccceeeEeecCCCCCCccCCeEEE
Q 001336 881 -----EVKTKLK-----GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG--W-EKQASKFLTIPNGRTASALADTRVQ 947 (1097)
Q Consensus 881 -----~~~~~l~-----~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~--~-~~~~~~~~~~~~~~~~~~~~v~~l~ 947 (1097)
.....+. .+...+-.++|.+.++.|+.+-+..-..++.+.. . ....................+..++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 1112221 2455688999999988888887777777777764 1 1111000000000111114578899
Q ss_pred EcCCCcEEEE-E-eCCeEEEEeCCCcceeeeeeccC--C-----CCCEEEEEEecCCCEEEEEecCCeEEEE
Q 001336 948 FHLDQTHLLA-V-HETQIAIYEAPKLECLKQFVPRE--A-----SGPITHATYSCDSQSIYVAFEEGSVGVL 1010 (1097)
Q Consensus 948 ~s~dg~~l~~-~-~d~~v~vwd~~~~~~~~~~~~~~--h-----~~~v~~v~~s~dg~~l~s~s~Dg~v~vw 1010 (1097)
++|....|.+ + ....|.++| ..|+.+..+.... | -...-.|+|.++|++.+ .++-+..++|
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 9997655444 5 557888888 5577666655432 1 23578899999997655 5566666655
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.15 Score=57.32 Aligned_cols=264 Identities=15% Similarity=0.120 Sum_probs=168.5
Q ss_pred ceEEEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEE
Q 001336 310 KTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 389 (1097)
Q Consensus 310 ~~~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 389 (1097)
......+.-......+.+.|+|..+.++-.....+.+-+......... ...-...-..++.
T Consensus 21 ~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~-------------------~~~g~~~p~~i~v 81 (381)
T COG3391 21 NKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQS-------------------LSVGGVYPAGVAV 81 (381)
T ss_pred cEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeee-------------------ccCCCccccceee
Confidence 344444444447778899999976666654444444444431111100 0111134557889
Q ss_pred ccCCCEEEEE-ECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEe-CCCcEEEEECCCCceeEEee
Q 001336 390 SPDGTLFGVA-YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGTKQYIFE 467 (1097)
Q Consensus 390 spd~~~las~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~ 467 (1097)
++++..+... ..+..|.+.|..+....... ..+. ....++++++++.++++-.. .++++.+.|..+++.+.+..
T Consensus 82 ~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~--~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~ 157 (381)
T COG3391 82 NPAGNKVYVTTGDSNTVSVIDTATNTVLGSI--PVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP 157 (381)
T ss_pred CCCCCeEEEecCCCCeEEEEcCcccceeeEe--eecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence 9988855554 45688999997776544422 2222 56789999999863333333 47899999999998888755
Q ss_pred cCCcCeEEEeecccCCccEEEEE-cCCCeEEEEEcCCCCcee-e---ecCCCCceEEEEEccCCCEEEEeeeCCCCCceE
Q 001336 468 GHESPVYSICPHHKENIQFIFST-ATDGKIKAWLYDNLGSRV-D---YDAPGHSSTMMAYSADGARLFSCGTNKEGESYL 542 (1097)
Q Consensus 468 ~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 542 (1097)
.-..+ ..+++ +++|..++.. ..++.|.+.|........ . .......-..+.++|+|.++...... +.+..+
T Consensus 158 vG~~P-~~~a~--~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~-~~~~~v 233 (381)
T COG3391 158 VGNTP-TGVAV--DPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG-SGSNNV 233 (381)
T ss_pred cCCCc-ceEEE--CCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc-CCCceE
Confidence 43344 66777 5666755444 578999999966544332 0 11122245678899999977766432 223578
Q ss_pred EEEeCCCCeeeEE-ecCCCCcceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEec
Q 001336 543 VEWNESEGAVKRT-YHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDA 601 (1097)
Q Consensus 543 ~~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 601 (1097)
...|..++..... +..... ....+.+.|+|..++... ..+.+.+.|..+.........
T Consensus 234 ~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 234 LKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred EEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 8999888876665 333332 345688999999988885 558899999988887776643
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.57 E-value=0.11 Score=59.59 Aligned_cols=245 Identities=14% Similarity=0.128 Sum_probs=128.9
Q ss_pred CeEEEEEccCCCEEEEE-ECCC----EEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeC---------
Q 001336 383 SVNRVMWSPDGTLFGVA-YSKH----IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE--------- 448 (1097)
Q Consensus 383 ~V~~v~~spd~~~las~-~~dg----~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~--------- 448 (1097)
.+...++||||++||.+ +..| .++++|+.+|+.+... +.... -..+.|.+|++. ++.+...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--i~~~~--~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--IENPK--FSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--EEEEE--SEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc--ccccc--cceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 44578899999999876 3333 6999999999765432 22211 123999999985 3344322
Q ss_pred -CCcEEEEECCCCcee--EEeecCCcC--eEEEeecccCCccEEEEEc-C--C-CeEEEEEcCCC----CceeeecCCCC
Q 001336 449 -DRVIKVWDAVTGTKQ--YIFEGHESP--VYSICPHHKENIQFIFSTA-T--D-GKIKAWLYDNL----GSRVDYDAPGH 515 (1097)
Q Consensus 449 -d~~i~iwd~~~~~~~--~~~~~h~~~--v~~~~~~~~~~~~~l~s~~-~--d-g~i~iwd~~~~----~~~~~~~~~~~ 515 (1097)
...|+.|.+.++..- ..+...... ...+.. +.++++|+... . + ..+.+.++... .....+.....
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~--s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSR--SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEe--cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 224788888776432 455554444 334444 56667765432 2 2 34666677653 12222222222
Q ss_pred ceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCee---eEEecCCCC-cceEEEEEcCCCCEEEEEe-CCC--cEEEE
Q 001336 516 SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV---KRTYHGLGK-RSVGVVQFDTTKNRFLAAG-DEF--MIKFW 588 (1097)
Q Consensus 516 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~dg--~i~iw 588 (1097)
.+....-+. +..+...+..+.....|...++..... ...+..+.. ..+..+. ..+++|+... .++ .|+++
T Consensus 278 ~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 278 GVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp S-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCEEEEEEEECCccEEEEE
Confidence 333222222 444444443445567788888877652 223333332 1344443 3455666554 444 58899
Q ss_pred ECCCCceEEEEecCCCCCCcceEEEcCCCCEEEE-EEC---CCcEEEEEcCCCc
Q 001336 589 DMDNVNLLASIDADGGLQASPCIRFNKEGILLAV-STN---DNGIKILANADGI 638 (1097)
Q Consensus 589 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s-~~~---dg~i~iw~~~~~~ 638 (1097)
++..+.....+.... .+.|..+...+++..+.. .+. -+++.-||+.++.
T Consensus 355 ~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 355 DLDDGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp ETT-TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred ECCCCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 998455555555432 334555555555544333 221 3578888888874
No 362
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.50 E-value=0.05 Score=54.76 Aligned_cols=254 Identities=12% Similarity=0.135 Sum_probs=140.3
Q ss_pred EEEEEcCCCCE-EEEEeCCCc-EEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECC-----CcEEEEEcCCC
Q 001336 565 GVVQFDTTKNR-FLAAGDEFM-IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND-----NGIKILANADG 637 (1097)
Q Consensus 565 ~~~~~~~~~~~-l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d-----g~i~iw~~~~~ 637 (1097)
..++|+|.... ++.+-.-|+ ..++|....+...++.......---.=.|||||.+|+..-+| |.|-|||...+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 44677776543 444544454 578999988877776543222222345699999999876443 67888887755
Q ss_pred ceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccc
Q 001336 638 IRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIW 717 (1097)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w 717 (1097)
.+.+-.+..
T Consensus 151 fqrvgE~~t----------------------------------------------------------------------- 159 (366)
T COG3490 151 FQRVGEFST----------------------------------------------------------------------- 159 (366)
T ss_pred cceeccccc-----------------------------------------------------------------------
Confidence 333222221
Q ss_pred cccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEe-ccCCCCCCccCccccccCCcccCCCCCccc
Q 001336 718 KLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLW-KWPRNERNSTGKATTNQAPQLWQPPSGILM 796 (1097)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw-~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 796 (1097)
|.-..-.+.+.+||+.++.+.. -|+.- ++...+.+.+.... ++-+.|..+|.++
T Consensus 160 --------------------~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsMeP---Slvlld~atG~li 214 (366)
T COG3490 160 --------------------HGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSMEP---SLVLLDAATGNLI 214 (366)
T ss_pred --------------------CCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhcCc---cEEEEeccccchh
Confidence 2222335677888888877653 34443 33322222221111 1233455566654
Q ss_pred cc-cCCCCCCCCCeeEEEEccCCCEEEEEe-CCe-----EEEEEcCCCceeEEeCCC-------CCCeEEEEEeCCCCCE
Q 001336 797 TN-DISDTNPEDAVPCFALSKNDSYVMSAS-GGK-----ISLFNMMTFKTMTTFMPP-------PPAATFLAFHPQDNNI 862 (1097)
Q Consensus 797 ~~-~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~-----i~iwd~~~~~~~~~~~~~-------~~~i~~l~~sp~~~~~ 862 (1097)
.. .++..-+.-.|..++..+||+.++.+. .|. --+=-...++.+.-+... ...|-+++....++-.
T Consensus 215 ekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV 294 (366)
T COG3490 215 EKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLV 294 (366)
T ss_pred hhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeE
Confidence 32 333212566789999999999887764 221 111112233443333322 2347788888745544
Q ss_pred EEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001336 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918 (1097)
Q Consensus 863 la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd 918 (1097)
.++.-..+...+||..+|.++..-.- .....++-. ..-++..+.+|.+.++.
T Consensus 295 ~lTSP~GN~~vi~da~tG~vv~~a~l--~daaGva~~--~~gf~vssg~G~~~~~s 346 (366)
T COG3490 295 ALTSPRGNRAVIWDAATGAVVSEAAL--PDAAGVAAA--KGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEecCCCCeEEEEEcCCCcEEecccc--cccccceec--cCceEEecCCceEEecc
Confidence 45555566788999999987754321 112233333 22344455677777763
No 363
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.49 E-value=0.0053 Score=72.14 Aligned_cols=186 Identities=10% Similarity=0.070 Sum_probs=105.3
Q ss_pred CCeeEEEEccCCCEEEEEe-------CC--eEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECC--------
Q 001336 807 DAVPCFALSKNDSYVMSAS-------GG--KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED-------- 869 (1097)
Q Consensus 807 ~~v~~l~~s~dg~~la~~s-------dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~d-------- 869 (1097)
..+...++||||+.++... |. .|.+++. .+.. ..+. .....+.-.|+| +++.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt-~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVL-EGHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeee-cCCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 4678899999999988664 33 4555565 2233 3332 122488899999 77767666432
Q ss_pred ----CcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEE---EEcCCCcccceeeEeecCCCCCCccC
Q 001336 870 ----SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCV---WSTDGWEKQASKFLTIPNGRTASALA 942 (1097)
Q Consensus 870 ----g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1097)
+.+.+.+++.++... ...+.|..+.|||||..++... ++.|.+ -....++........+..+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 233333444333222 2346799999999999988766 577777 343444311111122221111 23
Q ss_pred CeEEEEcCCCcEEEEEeCCeEEEEeCCC-cceeeeeeccCCCCCEEEEEEecCCCEEEEEecCC
Q 001336 943 DTRVQFHLDQTHLLAVHETQIAIYEAPK-LECLKQFVPREASGPITHATYSCDSQSIYVAFEEG 1005 (1097)
Q Consensus 943 v~~l~~s~dg~~l~~~~d~~v~vwd~~~-~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg 1005 (1097)
+..+.|..++.+++...++...+|.+.- |.....+.......++.+++-+++ .|+....++
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCc
Confidence 5789999999976554444444444432 222222222223567888887763 344556666
No 364
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.45 E-value=0.12 Score=55.54 Aligned_cols=232 Identities=13% Similarity=0.122 Sum_probs=131.5
Q ss_pred cCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEe----
Q 001336 391 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF---- 466 (1097)
Q Consensus 391 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---- 466 (1097)
..++.|+.|..+| +.++++........ . .+...|..+...++-+ .++.-+ |+.++++++..-.....-
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence 3678999999999 89999833222221 1 1333499999999887 344443 499999998754433311
Q ss_pred ----------ecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCC-----CceeeecCCCCceEEEEEccCCCEEEE
Q 001336 467 ----------EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-----GSRVDYDAPGHSSTMMAYSADGARLFS 531 (1097)
Q Consensus 467 ----------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~ 531 (1097)
......+...+......+...+.....+.|.+|.+... ....++.. ...+.+++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEE
Confidence 11223344444112223334444455569999888753 12233333 3577888888 566666
Q ss_pred eeeCCCCCceEEEEeCCCCeeeEEecCCCC-----------cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--E
Q 001336 532 CGTNKEGESYLVEWNESEGAVKRTYHGLGK-----------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA--S 598 (1097)
Q Consensus 532 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~ 598 (1097)
+..+ ...+.|+.++.....+..... .++..+.. +++.+|++- |..-.+.|. .|+... .
T Consensus 154 ~~~~-----~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GTSK-----GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred EeCC-----ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 6532 378889887765444322211 12333333 334555543 333333344 344333 3
Q ss_pred EecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEeccccc
Q 001336 599 IDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTF 649 (1097)
Q Consensus 599 ~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 649 (1097)
+... .....+++. ..+|+..+. +.|.||++.++ ++++.+..+..
T Consensus 225 i~W~---~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~-~lvQ~i~~~~~ 268 (275)
T PF00780_consen 225 IQWS---SAPQSVAYS--SPYLIAFSS-NSIEVRSLETG-ELVQTIPLPNI 268 (275)
T ss_pred EEcC---CchhEEEEE--CCEEEEECC-CEEEEEECcCC-cEEEEEECCCE
Confidence 3332 234566664 447776665 45999999999 78888776543
No 365
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.43 E-value=0.1 Score=61.06 Aligned_cols=251 Identities=12% Similarity=0.055 Sum_probs=140.0
Q ss_pred EEEEEe-CCeEEEEEcCCCceeEEeCCCC----CCeEE-EEEeCCCCCEEEEEE------CCCcEEEEEcccceEEEEec
Q 001336 820 YVMSAS-GGKISLFNMMTFKTMTTFMPPP----PAATF-LAFHPQDNNIIAIGM------EDSSIQIYNVRVDEVKTKLK 887 (1097)
Q Consensus 820 ~la~~s-dg~i~iwd~~~~~~~~~~~~~~----~~i~~-l~~sp~~~~~la~g~------~dg~v~vwd~~~~~~~~~l~ 887 (1097)
.++.++ ++.|.-.|..+|+.+....... ..+++ ..+. ++ .++++. .+|.|.-+|..+|+.+-++.
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 444454 8999999999999887765321 11222 2222 34 344443 26899999999998876543
Q ss_pred ccc-------------------------------cCeE-EEEEecCCCEEEEEeCC-----C-----------cEEEEEc
Q 001336 888 GHQ-------------------------------KRIT-GLAFSNTLNVLVSSGAD-----S-----------QLCVWST 919 (1097)
Q Consensus 888 ~h~-------------------------------~~V~-~l~~s~dg~~l~s~~~D-----g-----------~i~iwd~ 919 (1097)
.-. +.++ .+++.+...+++.+..+ + .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 210 1111 23455555555554422 2 4666677
Q ss_pred CCCcccceeeEeecCCCCCCc--cCCeEEEEcCCCc---EEEE-EeCCeEEEEeCCCcceeeeeeccC----------CC
Q 001336 920 DGWEKQASKFLTIPNGRTASA--LADTRVQFHLDQT---HLLA-VHETQIAIYEAPKLECLKQFVPRE----------AS 983 (1097)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~~~--~~v~~l~~s~dg~---~l~~-~~d~~v~vwd~~~~~~~~~~~~~~----------h~ 983 (1097)
++++.. +....++...-... ....-+.+..+|+ .++. ..+|.+++.|..+|+.+....... ..
T Consensus 279 ~TG~~~-W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~ 357 (527)
T TIGR03075 279 DTGKIK-WHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT 357 (527)
T ss_pred ccCCEE-EeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence 777632 22222211111111 1222233345776 4444 478999999999998862211000 00
Q ss_pred -CC----------------------------EEEEEEecCCCEEEEEecC------------------------------
Q 001336 984 -GP----------------------------ITHATYSCDSQSIYVAFEE------------------------------ 1004 (1097)
Q Consensus 984 -~~----------------------------v~~v~~s~dg~~l~s~s~D------------------------------ 1004 (1097)
.+ -..++++|+..++.....+
T Consensus 358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~ 437 (527)
T TIGR03075 358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPD 437 (527)
T ss_pred CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCC
Confidence 00 0125566666655543333
Q ss_pred ---CeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCCCcccCCCCCCCCCC
Q 001336 1005 ---GSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNENGA 1081 (1097)
Q Consensus 1005 ---g~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~~~~~~~~~~~~~~~ 1081 (1097)
|.|.-+|+.+|+.+.+....... .+. .+.. .+.+++.++.||.++.+|..+++.-|..--+....+
T Consensus 438 ~~~g~l~AiD~~tGk~~W~~~~~~p~----~~~--~l~t-----~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a 506 (527)
T TIGR03075 438 DHMGSLIAWDPITGKIVWEHKEDFPL----WGG--VLAT-----AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVG 506 (527)
T ss_pred CCceeEEEEeCCCCceeeEecCCCCC----CCc--ceEE-----CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCcee
Confidence 45777888888877666532211 011 1211 356788888899999999999999998877655555
Q ss_pred CCCC
Q 001336 1082 GPST 1085 (1097)
Q Consensus 1082 ~~~~ 1085 (1097)
.|++
T Consensus 507 ~P~t 510 (527)
T TIGR03075 507 PPVT 510 (527)
T ss_pred cCEE
Confidence 5544
No 366
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.41 E-value=0.32 Score=55.09 Aligned_cols=137 Identities=18% Similarity=0.301 Sum_probs=77.7
Q ss_pred EEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEeccc-c
Q 001336 813 ALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGH-Q 890 (1097)
Q Consensus 813 ~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h-~ 890 (1097)
.++.+....+... ++.+.+.+-...+. +. ..+++..+++|| +++++|.-..+|.+.|.+.+-.+.+.++... .
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~ 259 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK 259 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence 4555555555444 56666444333211 22 346899999999 9999999999999999887666666555433 2
Q ss_pred cCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCC
Q 001336 891 KRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPK 970 (1097)
Q Consensus 891 ~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~ 970 (1097)
.....+.|. |.|..+..|+ . . ..+--+.+ ..+.|.-++..++...-..++|..-..
T Consensus 260 ~~p~~~~WC---------G~dav~l~~~--~-~----l~lvg~~~--------~~~~~~~~~~~~l~~E~DG~riit~~~ 315 (410)
T PF04841_consen 260 SPPKQMAWC---------GNDAVVLSWE--D-E----LLLVGPDG--------DSISFWYDGPVILVSEIDGVRIITSTS 315 (410)
T ss_pred CCCcEEEEE---------CCCcEEEEeC--C-E----EEEECCCC--------CceEEeccCceEEeccCCceEEEeCCc
Confidence 334455554 4455455552 1 0 01111111 224555555545555445577777666
Q ss_pred cceeeeee
Q 001336 971 LECLKQFV 978 (1097)
Q Consensus 971 ~~~~~~~~ 978 (1097)
.+.+....
T Consensus 316 ~~~l~~Vp 323 (410)
T PF04841_consen 316 HEFLQRVP 323 (410)
T ss_pred eEEEEECC
Confidence 66555543
No 367
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.33 E-value=0.11 Score=55.84 Aligned_cols=231 Identities=13% Similarity=0.137 Sum_probs=132.9
Q ss_pred cCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEeCCe
Q 001336 749 NSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGK 828 (1097)
Q Consensus 749 pdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sdg~ 828 (1097)
..++.|+.|+++| +.++++.. ...... .. +...|..+...++-+.+++-+|+.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~---------------------~~~~~~-i~----~~~~I~ql~vl~~~~~llvLsd~~ 57 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSD---------------------PSKPTR-IL----KLSSITQLSVLPELNLLLVLSDGQ 57 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecC---------------------Ccccee-Ee----ecceEEEEEEecccCEEEEEcCCc
Confidence 3577899998888 77776521 000000 01 344599999999999999999999
Q ss_pred EEEEEcCCCceeEEe--------------CCCCCCeEEEE--EeCCCCCEEEEEECCCcEEEEEcccc-----eEEEEec
Q 001336 829 ISLFNMMTFKTMTTF--------------MPPPPAATFLA--FHPQDNNIIAIGMEDSSIQIYNVRVD-----EVKTKLK 887 (1097)
Q Consensus 829 i~iwd~~~~~~~~~~--------------~~~~~~i~~l~--~sp~~~~~la~g~~dg~v~vwd~~~~-----~~~~~l~ 887 (1097)
+.++++......... ......+...+ -...+..+|+++. .+.|.+|..... +..+++.
T Consensus 58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~ 136 (275)
T PF00780_consen 58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS 136 (275)
T ss_pred cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE
Confidence 999998765443311 11223344444 1121445566555 458888887653 3445554
Q ss_pred ccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCC------CCCccCCeEEEEcCCCcEEEEEeCC
Q 001336 888 GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGR------TASALADTRVQFHLDQTHLLAVHET 961 (1097)
Q Consensus 888 ~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~------~~~~~~v~~l~~s~dg~~l~~~~d~ 961 (1097)
- ...+..++|. ++.++.+..++ ..+.|+.++..... ....... .....++..+..+ ++.+|++ .+.
T Consensus 137 l-p~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~-~~~ 208 (275)
T PF00780_consen 137 L-PDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSEL--LDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC-YDN 208 (275)
T ss_pred c-CCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEE--eCccCCcchhhhcccCCCceEEEEeC-CceEEEE-ecc
Confidence 3 3678899998 55677776555 88889987553221 1111110 0000223333333 4565654 333
Q ss_pred eEEEEeCCCcceee--eeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeC
Q 001336 962 QIAIYEAPKLECLK--QFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRIN 1022 (1097)
Q Consensus 962 ~v~vwd~~~~~~~~--~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~ 1022 (1097)
.-.+.|. .|+..+ .+. -...+.++++. ..||+..+. +.|.||++.+++++..+.
T Consensus 209 ~g~fv~~-~G~~~r~~~i~---W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 209 IGVFVNK-NGEPSRKSTIQ---WSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred eEEEEcC-CCCcCcccEEE---cCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 3333344 343332 121 13456667764 447776655 569999999999876666
No 368
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.27 E-value=0.00027 Score=77.97 Aligned_cols=200 Identities=14% Similarity=0.171 Sum_probs=129.1
Q ss_pred CCCeeEEEEccCC--CEEEEEe-CCeEEEEEcCCCce--eEEeCCCCCCeEEEEEeCCCCCEEEEEE----CCCcEEEEE
Q 001336 806 EDAVPCFALSKND--SYVMSAS-GGKISLFNMMTFKT--MTTFMPPPPAATFLAFHPQDNNIIAIGM----EDSSIQIYN 876 (1097)
Q Consensus 806 ~~~v~~l~~s~dg--~~la~~s-dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~sp~~~~~la~g~----~dg~v~vwd 876 (1097)
...+.|++..-+. -.+++|. +|.|.+-......- .....++...+++++|.+-|...||.|- .|-.+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4456677666544 3667776 88888887654322 1233456678999999997778888874 355899999
Q ss_pred cccc--eEE--EEecc-cccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcC-
Q 001336 877 VRVD--EVK--TKLKG-HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHL- 950 (1097)
Q Consensus 877 ~~~~--~~~--~~l~~-h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~- 950 (1097)
+.++ .+. ..+.+ -.....+++|-.+.+++.+|.....+.++|+....... ..+.. ..+..+..+|
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~-~svnT--------k~vqG~tVdp~ 206 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV-SSVNT--------KYVQGITVDPF 206 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh-hhhhh--------hhcccceecCC
Confidence 9876 111 12222 22345578888888899999988899999987422111 01111 2367788899
Q ss_pred CCcEEEEEeCCeEEEEeC-CCcce-eeeeecc--CCCCCEEEEEEecCCC-EEEEEecC-CeEEEEeCCC
Q 001336 951 DQTHLLAVHETQIAIYEA-PKLEC-LKQFVPR--EASGPITHATYSCDSQ-SIYVAFEE-GSVGVLTAST 1014 (1097)
Q Consensus 951 dg~~l~~~~d~~v~vwd~-~~~~~-~~~~~~~--~h~~~v~~v~~s~dg~-~l~s~s~D-g~v~vwd~~~ 1014 (1097)
.+.|++...|+.|.+||. .+-+. +..+... .-...+..++|.|-.. .|++.+.| ++|+.+++..
T Consensus 207 ~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 207 SPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 888999988999999994 32222 1111100 0123489999998543 35556655 7899999753
No 369
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.097 Score=52.78 Aligned_cols=248 Identities=14% Similarity=0.157 Sum_probs=139.8
Q ss_pred eEEEEeecCCCeeEEEEccCCCeEEEEEeCCCe-EEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEE
Q 001336 311 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGD-VMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 389 (1097)
Q Consensus 311 ~~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 389 (1097)
+++..+.-...-..++|+|.-++-++.+-.-|+ ..++|.+..+.+....- ....-+.||. .|
T Consensus 59 k~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s-----------~~~RHfyGHG------vf 121 (366)
T COG3490 59 KIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS-----------QEGRHFYGHG------VF 121 (366)
T ss_pred ceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec-----------ccCceeeccc------cc
Confidence 444444433444578899988766666666554 56889888766543110 0111245563 69
Q ss_pred ccCCCEEEEEEC-----CCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeC----------------
Q 001336 390 SPDGTLFGVAYS-----KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE---------------- 448 (1097)
Q Consensus 390 spd~~~las~~~-----dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~---------------- 448 (1097)
||||++|...-. -|.|-|||...+ +.+..++..|.-.-..+.|.+||.. ++.+..
T Consensus 122 s~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrt--lvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 122 SPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRT--LVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred CCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcE--EEEeCCceecccccCccccchh
Confidence 999999988644 368999999854 5666678888888899999999994 444321
Q ss_pred --CCcEEEEECCCCceeE--Eee--cCCcCeEEEeecccCCccEEEEEcCCCe-----EEEEEcCCCCceeeecCC----
Q 001336 449 --DRVIKVWDAVTGTKQY--IFE--GHESPVYSICPHHKENIQFIFSTATDGK-----IKAWLYDNLGSRVDYDAP---- 513 (1097)
Q Consensus 449 --d~~i~iwd~~~~~~~~--~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~---- 513 (1097)
.-++.+.|..+|..+. ++. .+...|..++. ..||..++.+-..|. -.+=-...++....+...
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~--g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~ 275 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDI--GRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQT 275 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeee--CCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHH
Confidence 1134455555555543 222 23344555554 444433332211111 000000111111111111
Q ss_pred ---CCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001336 514 ---GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 589 (1097)
Q Consensus 514 ---~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 589 (1097)
.+-|-+++.+.+...++..+..+ +...+||..+|..+..-.-... .-..+...-++..+.+|.+.++.
T Consensus 276 ~~~anYigsiA~n~~~glV~lTSP~G---N~~vi~da~tG~vv~~a~l~da-----aGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 276 AAFANYIGSIAANRRDGLVALTSPRG---NRAVIWDAATGAVVSEAALPDA-----AGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred HHHHhhhhheeecccCCeEEEecCCC---CeEEEEEcCCCcEEeccccccc-----ccceeccCceEEecCCceEEecc
Confidence 12456777777666776665433 3688999999988765443221 22233445677777788888774
No 370
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.26 E-value=0.092 Score=56.24 Aligned_cols=224 Identities=14% Similarity=0.093 Sum_probs=135.1
Q ss_pred EEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCC
Q 001336 324 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 403 (1097)
Q Consensus 324 ~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg 403 (1097)
+-.|.|+...|+.+--..+.|.-|+..+++.... .+.+.+.++..-.++..|+++...
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~---------------------~~p~~~~~~~~~d~~g~Lv~~~~g- 86 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVF---------------------PSPGGFSSGALIDAGGRLIACEHG- 86 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEE---------------------ECCCCcccceeecCCCeEEEEccc-
Confidence 4467788887888888889999999987754321 133445555555555566665443
Q ss_pred EEEEEEccCCeeeeeeeeee-cc-cCcEEEEEEecCCCcEEEEEEeCC-----C-----cEEEEECC-CCceeEEeecCC
Q 001336 404 IVHLYTYHGGDELRNHLEIE-AH-VGSVNDLAFSYPNKQLSVVTCGED-----R-----VIKVWDAV-TGTKQYIFEGHE 470 (1097)
Q Consensus 404 ~i~iwd~~~~~~~~~~~~l~-~h-~~~V~~l~~s~d~~~~~l~s~s~d-----~-----~i~iwd~~-~~~~~~~~~~h~ 470 (1097)
+.+++.+++..+....... +. ....+.+...|+|. +..+... . .-.+|-+. .+..++.+..+-
T Consensus 87 -~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~---~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~ 162 (307)
T COG3386 87 -VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR---IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL 162 (307)
T ss_pred -cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC---EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcE
Confidence 5677776665422222111 22 24566788889998 3333333 1 12344444 566677666666
Q ss_pred cCeEEEeecccCCccEEEEEc-CCCeEEEEEcCC-----CCc--eeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceE
Q 001336 471 SPVYSICPHHKENIQFIFSTA-TDGKIKAWLYDN-----LGS--RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL 542 (1097)
Q Consensus 471 ~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~-----~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 542 (1097)
..-+.++|++ |++.++.+. ..+.|.-|+++. ... ........+..-.++...+|.+-+++... ...|
T Consensus 163 ~~~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---g~~v 237 (307)
T COG3386 163 TIPNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---GGRV 237 (307)
T ss_pred EecCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---CceE
Confidence 6667889954 555665554 458888887762 111 11222233455567788888887644332 2369
Q ss_pred EEEeCCCCeeeEEecCCCCcceEEEEEc-CCCCEEEEEe
Q 001336 543 VEWNESEGAVKRTYHGLGKRSVGVVQFD-TTKNRFLAAG 580 (1097)
Q Consensus 543 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 580 (1097)
..|+.. ++++..+..... .+.+++|. ++.+.|+..+
T Consensus 238 ~~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 238 VRFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 999988 888888887754 67777774 4455555554
No 371
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.26 E-value=0.12 Score=57.06 Aligned_cols=218 Identities=14% Similarity=0.110 Sum_probs=117.1
Q ss_pred EEEEEEccCCeeeeeeeeeecccC--cEEEEEEecCC--CcEEEEEEeC----------CCcEEEEECCCC----ceeEE
Q 001336 404 IVHLYTYHGGDELRNHLEIEAHVG--SVNDLAFSYPN--KQLSVVTCGE----------DRVIKVWDAVTG----TKQYI 465 (1097)
Q Consensus 404 ~i~iwd~~~~~~~~~~~~l~~h~~--~V~~l~~s~d~--~~~~l~s~s~----------d~~i~iwd~~~~----~~~~~ 465 (1097)
.|++.|..+.+.+. ...+..... .+..+.+..+. +..+++.|+. .|.|.++++.+. ..+..
T Consensus 3 ~i~l~d~~~~~~~~-~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTTFEVLD-SFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTTSSEEE-EEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCCCeEEE-EEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 57888888777554 334554333 22333333321 2236776653 288999999884 22222
Q ss_pred e--ecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCC--CceEEEEEccCCCEEEEeeeCCCCCce
Q 001336 466 F--EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG--HSSTMMAYSADGARLFSCGTNKEGESY 541 (1097)
Q Consensus 466 ~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~~~~ 541 (1097)
+ ....++|++++.. ++.++++. ++.|.+|++...+......... ..+.++.. .+++++.+...+ ...
T Consensus 82 i~~~~~~g~V~ai~~~---~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~--sv~ 152 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF---NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMK--SVS 152 (321)
T ss_dssp EEEEEESS-EEEEEEE---TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSS--SEE
T ss_pred EEEEeecCcceEhhhh---CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEccc--CEE
Confidence 2 2357889999753 33433333 4899999998877222222222 24444444 456777764322 333
Q ss_pred EEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC-------C--ceEEEEecCCCCCCcceE-
Q 001336 542 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-------V--NLLASIDADGGLQASPCI- 611 (1097)
Q Consensus 542 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~--~~~~~~~~~~~~~~v~~v- 611 (1097)
+.-|+....+....-.......+.++.|-++++.++++..+|.|.++.... + ++......|- ...|+++
T Consensus 153 ~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l-g~~v~~~~ 231 (321)
T PF03178_consen 153 LLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL-GDIVNSFR 231 (321)
T ss_dssp EEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEE
T ss_pred EEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC-CCccceEE
Confidence 444565433333333333333678888886667899999999999998762 2 2222222222 2356666
Q ss_pred --EEcC--CC------CEEEEEECCCcEEEE
Q 001336 612 --RFNK--EG------ILLAVSTNDNGIKIL 632 (1097)
Q Consensus 612 --~~s~--~~------~~l~s~~~dg~i~iw 632 (1097)
.+.| .+ ..++.++.+|.|...
T Consensus 232 ~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 232 RGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp E--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 4444 12 247888899988844
No 372
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.26 E-value=0.051 Score=64.82 Aligned_cols=146 Identities=12% Similarity=0.094 Sum_probs=97.8
Q ss_pred CCCEEEEE-ECCCcEEEEEcccceEEEEecccccC-eEEEEEecC-------CCEEEEEeCCCcEEEEEcCCCcccceee
Q 001336 859 DNNIIAIG-MEDSSIQIYNVRVDEVKTKLKGHQKR-ITGLAFSNT-------LNVLVSSGADSQLCVWSTDGWEKQASKF 929 (1097)
Q Consensus 859 ~~~~la~g-~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~d-------g~~l~s~~~Dg~i~iwd~~~~~~~~~~~ 929 (1097)
+.++|..- .....|+-.|+..|+.+..++.|... |..+ .|+ ...-+.|-.+..+..||..-.. .++
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~ 566 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKL 566 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCC---Cce
Confidence 44444443 34578999999999999999988754 5544 443 2334556677889999987532 112
Q ss_pred EeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEE
Q 001336 930 LTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGV 1009 (1097)
Q Consensus 930 ~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~v 1009 (1097)
+..............+++-+.+|...+.+.+|.|++||-- |...++.. .+-..+|.+|..+.||++|++.+ +.++.+
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~l-p~lG~pI~~iDvt~DGkwilaTc-~tyLlL 643 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTAL-PGLGDPIIGIDVTADGKWILATC-KTYLLL 643 (794)
T ss_pred eeccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcC-CCCCCCeeEEEecCCCcEEEEee-cceEEE
Confidence 2111111122245678888888887777899999999954 33333332 25578999999999999988555 677888
Q ss_pred EeC
Q 001336 1010 LTA 1012 (1097)
Q Consensus 1010 wd~ 1012 (1097)
++.
T Consensus 644 i~t 646 (794)
T PF08553_consen 644 IDT 646 (794)
T ss_pred EEE
Confidence 885
No 373
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.14 E-value=0.075 Score=58.55 Aligned_cols=213 Identities=12% Similarity=0.048 Sum_probs=118.0
Q ss_pred eEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEE---EEEccC----CCEEEEEEC----------CCEE
Q 001336 343 DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNR---VMWSPD----GTLFGVAYS----------KHIV 405 (1097)
Q Consensus 343 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~---v~~spd----~~~las~~~----------dg~i 405 (1097)
.|+|.|..+.+.+....+. ....|.+ +.|..+ ..+|++|+. .|.|
T Consensus 3 ~i~l~d~~~~~~~~~~~l~------------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri 64 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELE------------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRI 64 (321)
T ss_dssp EEEEEETTTSSEEEEEEEE------------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEE
T ss_pred EEEEEeCCCCeEEEEEECC------------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEE
Confidence 5788888887776554432 2233444 444433 568888753 2899
Q ss_pred EEEEccCC----eeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-eeEEee-cCCcCeEEEeec
Q 001336 406 HLYTYHGG----DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIFE-GHESPVYSICPH 479 (1097)
Q Consensus 406 ~iwd~~~~----~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~-~h~~~v~~~~~~ 479 (1097)
.++++... ..++.... ....++|++++-- ++. |+.+. .+.|++|++...+ ....-. .....+.++..
T Consensus 65 ~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~---lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~- 137 (321)
T PF03178_consen 65 LVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR---LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV- 137 (321)
T ss_dssp EEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE---EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE-
T ss_pred EEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE---EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec-
Confidence 99999884 23333322 2457889998877 333 33333 4789999998877 443222 22335666654
Q ss_pred ccCCccEEEEEcCCCeEEEEEcCCCCceee---ecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCC-------
Q 001336 480 HKENIQFIFSTATDGKIKAWLYDNLGSRVD---YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE------- 549 (1097)
Q Consensus 480 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~------- 549 (1097)
.. ++++.|+....+.++.++....... .......++++.+-++++.++.+-. .+.+.++....
T Consensus 138 -~~--~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~----~gnl~~l~~~~~~~~~~~ 210 (321)
T PF03178_consen 138 -FK--NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK----DGNLFVLRYNPEIPNSRD 210 (321)
T ss_dssp -ET--TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET----TSEEEEEEE-SS-SSTTT
T ss_pred -cc--cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC----CCeEEEEEECCCCccccc
Confidence 23 5899999889998887665333222 2223447888888866665555532 34566655431
Q ss_pred C--eeeEEecCCCCcceEEE---EEcC--CCC------EEEEEeCCCcEEE
Q 001336 550 G--AVKRTYHGLGKRSVGVV---QFDT--TKN------RFLAAGDEFMIKF 587 (1097)
Q Consensus 550 ~--~~~~~~~~~~~~~v~~~---~~~~--~~~------~l~~~~~dg~i~i 587 (1097)
+ ++.....-|-+..+.++ ++.| .+. .++.++.+|.|.+
T Consensus 211 ~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 211 GDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp TTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 1 23333333434456655 3334 111 3666667777763
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.14 E-value=0.21 Score=53.50 Aligned_cols=220 Identities=15% Similarity=0.125 Sum_probs=123.6
Q ss_pred EEccCCCEE-EEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEe
Q 001336 388 MWSPDGTLF-GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 466 (1097)
Q Consensus 388 ~~spd~~~l-as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 466 (1097)
.|.++...| .+--..+.|.-|+..+++... +. +.+.+.++..-.++. .|+++.. .+.+++.+++..+..+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~----~~-~p~~~~~~~~~d~~g--~Lv~~~~--g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV----FP-SPGGFSSGALIDAGG--RLIACEH--GVRLLDPDTGGKITLL 101 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE----EE-CCCCcccceeecCCC--eEEEEcc--ccEEEeccCCceeEEe
Confidence 466766644 444557788999988765321 22 334455555555555 4555543 4566776666553322
Q ss_pred ec----C-CcCeEEEeecccCCccEEEEEcC---------CCeEEEEEcCC-CCceeeecCCCCceEEEEEccCCCEEEE
Q 001336 467 EG----H-ESPVYSICPHHKENIQFIFSTAT---------DGKIKAWLYDN-LGSRVDYDAPGHSSTMMAYSADGARLFS 531 (1097)
Q Consensus 467 ~~----h-~~~v~~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 531 (1097)
.. . ...-+...+ .++|.+.++... ...=.+|.++. +........+-..-+.++||||++.++.
T Consensus 102 ~~~~~~~~~~r~ND~~v--~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 102 AEPEDGLPLNRPNDGVV--DPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccccCCCCcCCCCceeE--cCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEE
Confidence 11 1 123344554 445555544333 01114555553 2333323222335578999999998887
Q ss_pred eeeCCCCCceEEEEeCCC--C----eeeEEecCCCCcceEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceEEEEecCCC
Q 001336 532 CGTNKEGESYLVEWNESE--G----AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF-MIKFWDMDNVNLLASIDADGG 604 (1097)
Q Consensus 532 ~~~~~~~~~~i~~wd~~~--~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~ 604 (1097)
+-. ..+.|+-|++.. + +..........+..-.++...+|++.+++..+| .|.+|+.+ |+++..+..+
T Consensus 180 aDT---~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP-- 253 (307)
T COG3386 180 ADT---PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP-- 253 (307)
T ss_pred EeC---CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC--
Confidence 643 244677776652 1 111122212223555677888888776555544 99999998 9999999876
Q ss_pred CCCcceEEEcC-CCCEEEEEE
Q 001336 605 LQASPCIRFNK-EGILLAVST 624 (1097)
Q Consensus 605 ~~~v~~v~~s~-~~~~l~s~~ 624 (1097)
...+.+++|-- +.+.|++.+
T Consensus 254 ~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 254 VKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCCCccceEeCCCcCEEEEEe
Confidence 35677888753 445554443
No 375
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0029 Score=70.31 Aligned_cols=93 Identities=18% Similarity=0.440 Sum_probs=71.5
Q ss_pred CCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeE-EEEEccCCCEEEE
Q 001336 320 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN-RVMWSPDGTLFGV 398 (1097)
Q Consensus 320 ~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~spd~~~las 398 (1097)
..|..+.|+|.-. |+|.+..+|.|.+..++ -++ +|. +.-|...|+ +++|.|||+.||+
T Consensus 21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qR-------lwt------------ip~p~~~v~~sL~W~~DGkllaV 79 (665)
T KOG4640|consen 21 INIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQR-------LWT------------IPIPGENVTASLCWRPDGKLLAV 79 (665)
T ss_pred cceEEEEEcCccc-hhheeccCCcEEEEEec-cce-------eEe------------ccCCCCccceeeeecCCCCEEEE
Confidence 4678899999887 77999999999999887 333 333 222555666 9999999999999
Q ss_pred EECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEe
Q 001336 399 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS 435 (1097)
Q Consensus 399 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s 435 (1097)
|-.||+|++-|+.++..+... ...-...|.++-|.
T Consensus 80 g~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWD 114 (665)
T ss_pred EecCCeEEEEEccCCCceecc--ccccccchheeecc
Confidence 999999999999998765432 22345567777776
No 376
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.93 E-value=0.25 Score=54.87 Aligned_cols=82 Identities=13% Similarity=0.230 Sum_probs=59.7
Q ss_pred ceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCC-----------------E-EE
Q 001336 516 SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-----------------R-FL 577 (1097)
Q Consensus 516 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------~-l~ 577 (1097)
.+.+++.+|++++.++. |.-+.|.++|+.++..++.++|..+..+.-+.....+. + ++
T Consensus 309 ~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred eEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 56789999998876664 34567999999999999999998775554443322211 2 22
Q ss_pred EEeCCCcEEEEECCCCceEEEEec
Q 001336 578 AAGDEFMIKFWDMDNVNLLASIDA 601 (1097)
Q Consensus 578 ~~~~dg~i~iwd~~~~~~~~~~~~ 601 (1097)
-+-.-|.|.||++..|..+..+..
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEEe
Confidence 344788999999999988887764
No 377
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.025 Score=61.71 Aligned_cols=200 Identities=11% Similarity=0.146 Sum_probs=118.1
Q ss_pred CCeEEEEEcc-CCCEEEEEECC------CEEEEEEccCCeeeeee----eeeecccCcEEEEEEecCCCcEEEEEEeCCC
Q 001336 382 ASVNRVMWSP-DGTLFGVAYSK------HIVHLYTYHGGDELRNH----LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR 450 (1097)
Q Consensus 382 ~~V~~v~~sp-d~~~las~~~d------g~i~iwd~~~~~~~~~~----~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~ 450 (1097)
+.|.++++.. ++..|+.+..+ ..|-|+.-+.|-++..- ....+|+-...-+-.......+++.++....
T Consensus 277 ~~i~sl~~~a~~NS~Lvv~~~ns~V~Rn~~iGVfk~ekgl~f~~~i~n~s~~~g~S~~P~K~mL~~~dsnlil~~~~~~~ 356 (644)
T KOG2395|consen 277 GGIGSLDEGALDNSFLVVGYGNSYVTRNNRIGVFKNEKGLEFKAAIKNVSDGDGKSIDPHKAMLHRADSNLILMDGGEQD 356 (644)
T ss_pred cccchhhhcccCCceEEecccceEEEecceeeeeccCCceEEEeccCcccCCCccccCcchhhhhccccceEeeCCCCcC
Confidence 4567777775 56677776553 22333332222222110 0011222111112222233344677788888
Q ss_pred cEEEEECCCCceeEEeecCCcCeEEEeecccCCccEE-----EEEcCCCeEEEEEcCCCCc-eeee-cC----CCCceEE
Q 001336 451 VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFI-----FSTATDGKIKAWLYDNLGS-RVDY-DA----PGHSSTM 519 (1097)
Q Consensus 451 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-----~s~~~dg~i~iwd~~~~~~-~~~~-~~----~~~~v~~ 519 (1097)
.++-.|++.|+.+.++.-|.. |+-+.+.++..+..+ +.|-.|+.|.-||.+-... .... +. ......|
T Consensus 357 ~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc 435 (644)
T KOG2395|consen 357 KLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSC 435 (644)
T ss_pred cceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccce
Confidence 899999999999999987776 665666555444333 3466788899999885443 1111 11 1224556
Q ss_pred EEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001336 520 MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 589 (1097)
Q Consensus 520 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 589 (1097)
.+-..+| ++++++.+|+ |++||--..+....+++... .|..+..+.+|++|++.+. ..+.+.+
T Consensus 436 ~aTT~sG-~IvvgS~~Gd----IRLYdri~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc~-tyLlLi~ 498 (644)
T KOG2395|consen 436 FATTESG-YIVVGSLKGD----IRLYDRIGRRAKTALPGLGD-AIKHVDVTADGKWILATCK-TYLLLID 498 (644)
T ss_pred eeecCCc-eEEEeecCCc----EEeehhhhhhhhhcccccCC-ceeeEEeeccCcEEEEecc-cEEEEEE
Confidence 6666665 6777776554 99999743344445666655 8999999999999888775 3444444
No 378
>PRK10115 protease 2; Provisional
Probab=96.90 E-value=0.94 Score=55.15 Aligned_cols=245 Identities=9% Similarity=0.042 Sum_probs=123.2
Q ss_pred CCeEEEEEccCCCEEEEEECC-----CEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCC-----Cc
Q 001336 382 ASVNRVMWSPDGTLFGVAYSK-----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RV 451 (1097)
Q Consensus 382 ~~V~~v~~spd~~~las~~~d-----g~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d-----~~ 451 (1097)
-.+..+.|||||++||.+... ..|++-|+.+|+.+.. .+.+ . -..++|++|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 357778999999999887432 2688889988763321 1222 1 145999999985 33333322 47
Q ss_pred EEEEECCCC--ceeEEeecCCcCeEEEeecccCCccEEEEEc---CCCeEEEEEcCC--CCceeeecCCCCceEEEEEcc
Q 001336 452 IKVWDAVTG--TKQYIFEGHESPVYSICPHHKENIQFIFSTA---TDGKIKAWLYDN--LGSRVDYDAPGHSSTMMAYSA 524 (1097)
Q Consensus 452 i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~s~ 524 (1097)
|+.+++.++ +....+........ +......++.+++..+ .++.+.+++.+. ................+. +.
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 278 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY 278 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC
Confidence 888898888 43444544333333 2222243555554433 345788888533 222222222222222222 22
Q ss_pred CCCEEEEeeeCCCCCceEEEEeCCC-CeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEecC
Q 001336 525 DGARLFSCGTNKEGESYLVEWNESE-GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDAD 602 (1097)
Q Consensus 525 ~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~ 602 (1097)
+..+...+..+.....|...++.. ++....+.......+..+.+.. +..+++...+|.-+++-++. +..+..+...
T Consensus 279 -~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~ 356 (686)
T PRK10115 279 -QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIAFD 356 (686)
T ss_pred -CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEecCC
Confidence 344444443333344566666652 3222233332333677777762 34455555677655544332 2334444311
Q ss_pred CCCCCcceEEEc--CCCC-EEEEEEC---CCcEEEEEcCCC
Q 001336 603 GGLQASPCIRFN--KEGI-LLAVSTN---DNGIKILANADG 637 (1097)
Q Consensus 603 ~~~~~v~~v~~s--~~~~-~l~s~~~---dg~i~iw~~~~~ 637 (1097)
. ...+..+.++ +++. ++++.+. -+.+..+|..++
T Consensus 357 ~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 357 D-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred C-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 1 1112223344 3333 4444332 356777887765
No 379
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.79 E-value=0.53 Score=51.46 Aligned_cols=149 Identities=13% Similarity=0.078 Sum_probs=71.6
Q ss_pred ccEEEEEc-CCCeEEEEEcCCCCcee----eecC---CC----CceEEEEEccCCCEEEEeee--CCCCCceEEEEeCCC
Q 001336 484 IQFIFSTA-TDGKIKAWLYDNLGSRV----DYDA---PG----HSSTMMAYSADGARLFSCGT--NKEGESYLVEWNESE 549 (1097)
Q Consensus 484 ~~~l~s~~-~dg~i~iwd~~~~~~~~----~~~~---~~----~~v~~~~~s~~~~~l~~~~~--~~~~~~~i~~wd~~~ 549 (1097)
.++|+..+ ..+.|.+.|+.+..... .++. .. ..-..+.--|+|+.++++-. ++++.+-+.++|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 35666665 67899999987433221 1111 00 01223344589988887654 345566789999988
Q ss_pred CeeeEEecCCCC--cceEEEEEcCCCCEEEEEeC--------------------CCcEEEEECCCCceEEEEecCCCCCC
Q 001336 550 GAVKRTYHGLGK--RSVGVVQFDTTKNRFLAAGD--------------------EFMIKFWDMDNVNLLASIDADGGLQA 607 (1097)
Q Consensus 550 ~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~~~ 607 (1097)
.+.......... ..-..+.+.|..+.+++..- ..++.+||+.+.+.++++........
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 888887766432 23345677888888887642 35799999999999999986432223
Q ss_pred cceEEEc--CCCCEEEEEE-CCCcEEEE
Q 001336 608 SPCIRFN--KEGILLAVST-NDNGIKIL 632 (1097)
Q Consensus 608 v~~v~~s--~~~~~l~s~~-~dg~i~iw 632 (1097)
...+.|. |+..+-+++. -..+|..|
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred eEEEEecCCCCccceEEEEeccceEEEE
Confidence 4456664 4444433332 23344444
No 380
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.77 E-value=0.041 Score=65.58 Aligned_cols=142 Identities=14% Similarity=0.127 Sum_probs=95.5
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeecCCcC-eEEEeeccc---CCccEEEEEcCCCeEEEEEcCCCCceeee-c----C
Q 001336 442 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESP-VYSICPHHK---ENIQFIFSTATDGKIKAWLYDNLGSRVDY-D----A 512 (1097)
Q Consensus 442 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~----~ 512 (1097)
+|........|+-.|++.|+.+..+..|... |..++-... -+....+.|-.++.+..||.+........ . .
T Consensus 496 il~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~ 575 (794)
T PF08553_consen 496 ILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS 575 (794)
T ss_pred EeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccc
Confidence 3444456788999999999999999988755 766643210 01234566777899999999875432221 1 1
Q ss_pred CCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001336 513 PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDM 590 (1097)
Q Consensus 513 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 590 (1097)
......|++-+.+| +||+|+..| .|++||--..+....+.+... +|..+..+.||+++++.+. ..+.+++.
T Consensus 576 ~~~~Fs~~aTt~~G-~iavgs~~G----~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 576 SKNNFSCFATTEDG-YIAVGSNKG----DIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred cCCCceEEEecCCc-eEEEEeCCC----cEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 23367788877777 566666544 499999543333444555554 9999999999999988875 45666554
No 381
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.75 E-value=0.0035 Score=43.01 Aligned_cols=39 Identities=33% Similarity=0.550 Sum_probs=34.6
Q ss_pred ceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001336 880 DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918 (1097)
Q Consensus 880 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd 918 (1097)
++.+..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667778999999999999999999999999999996
No 382
>PHA02713 hypothetical protein; Provisional
Probab=96.67 E-value=0.1 Score=61.90 Aligned_cols=228 Identities=13% Similarity=0.018 Sum_probs=115.3
Q ss_pred eEEEEEcCCCceeE--EeCCCCCCeEEEEEeCCCCCEEEEEECC------CcEEEEEcccceEEEEecccccCeEEEEEe
Q 001336 828 KISLFNMMTFKTMT--TFMPPPPAATFLAFHPQDNNIIAIGMED------SSIQIYNVRVDEVKTKLKGHQKRITGLAFS 899 (1097)
Q Consensus 828 ~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~~~~~la~g~~d------g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s 899 (1097)
.+..||..+.+-.. .+..... -.+++.. ++.+++.|+.+ ..+..||..+.+-...-.-....-......
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~-~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII-NYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc-ceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE
Confidence 46677776654221 1211111 1233333 67788888754 347788877654211111111111112223
Q ss_pred cCCCEEEEEeCCC-----cEEEEEcCCCcccceeeEee-cCCCCCCccCCeEEEEcCCCcEEEEE-eC------------
Q 001336 900 NTLNVLVSSGADS-----QLCVWSTDGWEKQASKFLTI-PNGRTASALADTRVQFHLDQTHLLAV-HE------------ 960 (1097)
Q Consensus 900 ~dg~~l~s~~~Dg-----~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~l~~s~dg~~l~~~-~d------------ 960 (1097)
-+|+..+.||.++ .+..||..+.+ +..+.. +.... ....+ .-+|+..+.| .+
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~---W~~~~~mp~~r~----~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~ 420 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDK---WKMLPDMPIALS----SYGMC--VLDQYIYIIGGRTEHIDYTSVHHMN 420 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCe---EEECCCCCcccc----cccEE--EECCEEEEEeCCCcccccccccccc
Confidence 4678888888764 37789987754 222111 11111 11112 2255555553 22
Q ss_pred -----------CeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecC------CeEEEEeCCC-CceeeeeC
Q 001336 961 -----------TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEE------GSVGVLTAST-LRLRCRIN 1022 (1097)
Q Consensus 961 -----------~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~D------g~v~vwd~~~-~~~~~~~~ 1022 (1097)
..+..||..+.+-...-. -........+..-+|++.+.|+.+ ..+..||..+ .+.. .+.
T Consensus 421 ~~~~~~~~~~~~~ve~YDP~td~W~~v~~--m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~-~~~ 497 (557)
T PHA02713 421 SIDMEEDTHSSNKVIRYDTVNNIWETLPN--FWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE-LIT 497 (557)
T ss_pred cccccccccccceEEEECCCCCeEeecCC--CCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCee-Ecc
Confidence 357788887654321111 111122222334467777777754 2467888887 4433 112
Q ss_pred CCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCC--cEEEEecCCCCcccCCCCCCCCCC
Q 001336 1023 PTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDG--GVYIIEPLEAEGRWGTSPPNENGA 1081 (1097)
Q Consensus 1023 ~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg--~v~~W~~~~~~~~~~~~~~~~~~~ 1081 (1097)
.+|.. ... ..+++. ++.+.++|+.|| ++..+|+...+ |....|.-...
T Consensus 498 ---~m~~~-r~~-~~~~~~----~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~~~~~~ 547 (557)
T PHA02713 498 ---TTESR-LSA-LHTILH----DNTIMMLHCYESYMLQDTFNVYTYE--WNHICHQHSNS 547 (557)
T ss_pred ---ccCcc-ccc-ceeEEE----CCEEEEEeeecceeehhhcCccccc--ccchhhhcCCc
Confidence 12211 011 122222 688999999998 78888887665 99888875433
No 383
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.66 E-value=0.49 Score=49.65 Aligned_cols=148 Identities=16% Similarity=0.074 Sum_probs=88.5
Q ss_pred CeEEEEEeCCCCCEEEEEE---CCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEE-cCCCcc
Q 001336 849 AATFLAFHPQDNNIIAIGM---EDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS-TDGWEK 924 (1097)
Q Consensus 849 ~i~~l~~sp~~~~~la~g~---~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd-~~~~~~ 924 (1097)
.+...++++ +++.+|... ....++++.... .....+.+. .++.-.|++++...+....+...+++. ...++.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~-~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGG-PVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCC-cceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 688999999 676665544 333455554332 222222333 678889999987777766666667774 233321
Q ss_pred cceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEe----CCeEEEEeCC---Cc--cee-eeeec-cCCCCCEEEEEEec
Q 001336 925 QASKFLTIPNGRTASALADTRVQFHLDQTHLLAVH----ETQIAIYEAP---KL--ECL-KQFVP-REASGPITHATYSC 993 (1097)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~----d~~v~vwd~~---~~--~~~-~~~~~-~~h~~~v~~v~~s~ 993 (1097)
.. ..+...... ..|..+.+||||..++... ++.|.+--+. .+ ..+ ..... ......++.++|.+
T Consensus 101 ~~-~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 101 EP-VEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred ee-EEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 11 112222111 1599999999999998843 6778776554 22 111 11111 12246899999999
Q ss_pred CCCEEEEEecCC
Q 001336 994 DSQSIYVAFEEG 1005 (1097)
Q Consensus 994 dg~~l~s~s~Dg 1005 (1097)
++.+++.+...+
T Consensus 176 ~~~L~V~~~~~~ 187 (253)
T PF10647_consen 176 DSTLVVLGRSAG 187 (253)
T ss_pred CCEEEEEeCCCC
Confidence 999877666544
No 384
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.61 E-value=0.34 Score=50.90 Aligned_cols=147 Identities=15% Similarity=0.057 Sum_probs=92.2
Q ss_pred CCeeEEEEccCCCEEEEEe--CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEE-cccceEE
Q 001336 807 DAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYN-VRVDEVK 883 (1097)
Q Consensus 807 ~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd-~~~~~~~ 883 (1097)
..+...++|+||+.+|... ++.-.||-...+....... ....++...|++ ++.+.+....+...+++. ..+++..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 3688999999999888766 5554444443433333332 234788899999 787777777777777774 3333221
Q ss_pred -EEecc--cccCeEEEEEecCCCEEEEEe---CCCcEEEEEcCCCccc-c---eeeEeecCCCCCCccCCeEEEEcCCCc
Q 001336 884 -TKLKG--HQKRITGLAFSNTLNVLVSSG---ADSQLCVWSTDGWEKQ-A---SKFLTIPNGRTASALADTRVQFHLDQT 953 (1097)
Q Consensus 884 -~~l~~--h~~~V~~l~~s~dg~~l~s~~---~Dg~i~iwd~~~~~~~-~---~~~~~~~~~~~~~~~~v~~l~~s~dg~ 953 (1097)
..+.. -.+.|+.+.+||||..+|... .++.|.+=-+...... . ...+.+... ....+..+.|.+++.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~---~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP---LLSDVTDVAWSDDST 178 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc---ccCcceeeeecCCCE
Confidence 12221 112899999999999888655 3567777766543322 1 111122211 114689999999999
Q ss_pred EEEEE
Q 001336 954 HLLAV 958 (1097)
Q Consensus 954 ~l~~~ 958 (1097)
+++.+
T Consensus 179 L~V~~ 183 (253)
T PF10647_consen 179 LVVLG 183 (253)
T ss_pred EEEEe
Confidence 88874
No 385
>PRK10115 protease 2; Provisional
Probab=96.58 E-value=3 Score=50.95 Aligned_cols=243 Identities=10% Similarity=0.026 Sum_probs=122.7
Q ss_pred CeeEEEEccCCCeEEEEEeCCC----eEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEE
Q 001336 321 AVKSMDFHPVQQILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 396 (1097)
Q Consensus 321 ~V~~v~fspdg~~lla~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 396 (1097)
.+..+.+||||++|+.+.+.+| .|.+-|+.+|+.+.. .+.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCEE
Confidence 4667899999997766655444 688888887763321 0111 11469999999877
Q ss_pred EEEECC------CEEEEEEccCCee-eeeeeeeecccCcEE-EEEEecCCCcEEEEEEe-CCCcEEEEECC--CCceeEE
Q 001336 397 GVAYSK------HIVHLYTYHGGDE-LRNHLEIEAHVGSVN-DLAFSYPNKQLSVVTCG-EDRVIKVWDAV--TGTKQYI 465 (1097)
Q Consensus 397 as~~~d------g~i~iwd~~~~~~-~~~~~~l~~h~~~V~-~l~~s~d~~~~~l~s~s-~d~~i~iwd~~--~~~~~~~ 465 (1097)
+....+ ..|..+++.++.. -.. .+........ .+..+.|++.+++-+.+ .++.+.+++.. ++.....
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l--v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~ 264 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL--VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVF 264 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeE--EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEE
Confidence 776542 3677888887721 111 1333333333 33334477753222222 24578888843 3443222
Q ss_pred eecCCcCeEEEeecccCCccEEEEEcC---CCeEEEEEcCC-CCceeeecCC-CCceEEEEEccCCCEEEEeeeCCCCCc
Q 001336 466 FEGHESPVYSICPHHKENIQFIFSTAT---DGKIKAWLYDN-LGSRVDYDAP-GHSSTMMAYSADGARLFSCGTNKEGES 540 (1097)
Q Consensus 466 ~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~-~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~ 540 (1097)
+..-.+....+. +. .+ .+++.... ...|...++.. ......+... ...+..+.++ ++.|+..... ++..
T Consensus 265 ~~~~~~~~~~~~-~~-~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~-~g~~ 338 (686)
T PRK10115 265 LPRRKDHEYSLD-HY-QH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQ-RGLT 338 (686)
T ss_pred EECCCCCEEEEE-eC-CC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEe-CCEE
Confidence 222222222222 21 22 33333322 22343344442 2222223332 2367777776 4455554432 3455
Q ss_pred eEEEEeCCCCeeeEEec-CCCCcceEEEEEc--CCCC-EEEEEe---CCCcEEEEECCCCc
Q 001336 541 YLVEWNESEGAVKRTYH-GLGKRSVGVVQFD--TTKN-RFLAAG---DEFMIKFWDMDNVN 594 (1097)
Q Consensus 541 ~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~--~~~~-~l~~~~---~dg~i~iwd~~~~~ 594 (1097)
.+.+++..++. +..+. .... .+..+.++ +++. .+++.+ .-+.++.+|+.+++
T Consensus 339 ~l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 339 SLRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 67888865443 33333 2111 22333344 3433 444433 45778899988765
No 386
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.58 E-value=0.16 Score=44.14 Aligned_cols=102 Identities=14% Similarity=0.152 Sum_probs=66.0
Q ss_pred eEEEEEcc-CC---CEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001336 384 VNRVMWSP-DG---TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 459 (1097)
Q Consensus 384 V~~v~~sp-d~---~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~ 459 (1097)
|+++++.. |+ +.|++|+.|..|+||+-.. .+. ++. -...|+++.-...+ .++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~---Ei~-e~~~v~~L~~~~~~---~F~Y~l~NGTVGvY~~-- 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVA---EIT-ETDKVTSLCSLGGG---RFAYALANGTVGVYDR-- 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEE---EEe-cccceEEEEEcCCC---EEEEEecCCEEEEEeC--
Confidence 66777765 33 5899999999999998653 233 232 34568888877665 4899999999999983
Q ss_pred CceeEEeecCCcCeEEEe-ecccCCc-cEEEEEcCCCeEE
Q 001336 460 GTKQYIFEGHESPVYSIC-PHHKENI-QFIFSTATDGKIK 497 (1097)
Q Consensus 460 ~~~~~~~~~h~~~v~~~~-~~~~~~~-~~l~s~~~dg~i~ 497 (1097)
...+-..+.. ..+.+++ +..+.+| .-|++|-.+|.|-
T Consensus 71 ~~RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQRLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cceeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2223333322 2255554 3333333 3688888888764
No 387
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.51 E-value=1.2 Score=45.75 Aligned_cols=188 Identities=9% Similarity=0.113 Sum_probs=115.9
Q ss_pred CCCeeEEEEccCCCEEEEEe-CC--eEEEEEcCCCceeEEeCCCCC-CeEEEEEeCCCCCEEEEEECCCcEEEEEcccce
Q 001336 806 EDAVPCFALSKNDSYVMSAS-GG--KISLFNMMTFKTMTTFMPPPP-AATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE 881 (1097)
Q Consensus 806 ~~~v~~l~~s~dg~~la~~s-dg--~i~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~ 881 (1097)
......+.|..+|.++-+.+ .| .|+.+|+.+++......-... ---.++.. ++++...--.++...+||..+.+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence 34456788888888887776 44 599999999988766543322 23345555 45666677789999999999998
Q ss_pred EEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eC
Q 001336 882 VKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HE 960 (1097)
Q Consensus 882 ~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d 960 (1097)
.+.++.- .+.=+.++ .|++.|+.......|.++|.++-+... .+.+.....+ ...+.-+.+- +|...|-. ..
T Consensus 122 ~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~--~i~V~~~g~p-v~~LNELE~i-~G~IyANVW~t 194 (264)
T PF05096_consen 122 KIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVR--TIQVTDNGRP-VSNLNELEYI-NGKIYANVWQT 194 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEE--EEE-EETTEE----EEEEEEE-TTEEEEEETTS
T ss_pred EEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEE--EEEEEECCEE-CCCcEeEEEE-cCEEEEEeCCC
Confidence 8888753 35667777 466667766666779999988755433 3333322211 1345556665 45444433 56
Q ss_pred CeEEEEeCCCcceeeeeeccC----------C---CCCEEEEEEecCCCEEEEEe
Q 001336 961 TQIAIYEAPKLECLKQFVPRE----------A---SGPITHATYSCDSQSIYVAF 1002 (1097)
Q Consensus 961 ~~v~vwd~~~~~~~~~~~~~~----------h---~~~v~~v~~s~dg~~l~s~s 1002 (1097)
..|...|.++|++...+...+ + ..-.+.+|+.|+...|...+
T Consensus 195 d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 195 DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 778888999998887654210 1 34688999988766654443
No 388
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.51 E-value=0.22 Score=58.79 Aligned_cols=235 Identities=12% Similarity=0.032 Sum_probs=126.4
Q ss_pred ccCCCEEEEEECCC------EEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCC------CcEEEEEC
Q 001336 390 SPDGTLFGVAYSKH------IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED------RVIKVWDA 457 (1097)
Q Consensus 390 spd~~~las~~~dg------~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d------~~i~iwd~ 457 (1097)
+..+.+++.||.++ .+..||..+++-. ....+. +...-.+++.. ++. +.++||.| .++..||.
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~-~~a~m~-~~r~~~~~~~~-~~~--lYv~GG~~~~~~~l~~ve~YD~ 356 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWS-SLAPMP-SPRCRVGVAVL-NGK--LYVVGGYDSGSDRLSSVERYDP 356 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEe-ecCCCC-cccccccEEEE-CCE--EEEEccccCCCcccceEEEecC
Confidence 33566777777763 6788888877422 222233 22334445554 344 78888888 36778888
Q ss_pred CCCceeEE--eecCCcCeEEEeecccCCccEEEEEcCCCe-----EEEEEcCCCCceeeecCCCCceEEE-EEccCCCEE
Q 001336 458 VTGTKQYI--FEGHESPVYSICPHHKENIQFIFSTATDGK-----IKAWLYDNLGSRVDYDAPGHSSTMM-AYSADGARL 529 (1097)
Q Consensus 458 ~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l 529 (1097)
.+++.... +........ ++ .-+|.+.+.||.||. +-.||..+.+-...-.... ..... ...-+|+..
T Consensus 357 ~~~~W~~~a~M~~~R~~~~-v~---~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iY 431 (571)
T KOG4441|consen 357 RTNQWTPVAPMNTKRSDFG-VA---VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLY 431 (571)
T ss_pred CCCceeccCCccCccccce-eE---EECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEE
Confidence 87775441 111111111 11 123467888888864 6667766544333322222 12222 223467777
Q ss_pred EEeeeCCCCC--ceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceEEEEecC
Q 001336 530 FSCGTNKEGE--SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF-----MIKFWDMDNVNLLASIDAD 602 (1097)
Q Consensus 530 ~~~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~ 602 (1097)
+++|.++..+ ..+..||..+..-...-.-.....-..++. -++...+.||.|+ +|..||..+.+-...-...
T Consensus 432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT 510 (571)
T ss_pred EEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence 7887665432 568899988775433322222111112222 3566777777666 3777888876655443222
Q ss_pred CCCCCcceEEEcCCCCEEEEEECCC-----cEEEEEcCCC
Q 001336 603 GGLQASPCIRFNKEGILLAVSTNDN-----GIKILANADG 637 (1097)
Q Consensus 603 ~~~~~v~~v~~s~~~~~l~s~~~dg-----~i~iw~~~~~ 637 (1097)
.....+..+.+ ++...++|+.|| +|..||..++
T Consensus 511 ~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 511 SPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred cccccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 12222223333 467778888776 3555555444
No 389
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.011 Score=65.90 Aligned_cols=92 Identities=14% Similarity=0.273 Sum_probs=77.1
Q ss_pred CCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeE-EEEEeCCCCCEEEEEECCCcEEEEEcccceEE
Q 001336 806 EDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAAT-FLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK 883 (1097)
Q Consensus 806 ~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~-~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~ 883 (1097)
...|.-+.|+|.-.++|.+. +|.|.+..+. .+.+.++.-|...++ +++|.| ||++||+|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 45678899999999999998 8999999987 888888887777777 999999 8999999999999999999998766
Q ss_pred EEe-cccccCeEEEEEe
Q 001336 884 TKL-KGHQKRITGLAFS 899 (1097)
Q Consensus 884 ~~l-~~h~~~V~~l~~s 899 (1097)
... ..-...|.++.|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 552 2244567777776
No 390
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.45 E-value=1.2 Score=49.01 Aligned_cols=243 Identities=15% Similarity=0.106 Sum_probs=118.8
Q ss_pred CeeEEEEccCCCEEEEEeCCeEEEEEcCCCce---eEEe----CCCCCCeEEEEEeCC---CCCEEEEEECC--------
Q 001336 808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MTTF----MPPPPAATFLAFHPQ---DNNIIAIGMED-------- 869 (1097)
Q Consensus 808 ~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~---~~~~----~~~~~~i~~l~~sp~---~~~~la~g~~d-------- 869 (1097)
..++|+|.|||+++++-..|.|++++ ..+.. +..+ .........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999988876699999999 44443 2222 123456899999982 24444444321
Q ss_pred CcEEEEEcccc-------eEE-EEecc---cccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecC-CCC
Q 001336 870 SSIQIYNVRVD-------EVK-TKLKG---HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPN-GRT 937 (1097)
Q Consensus 870 g~v~vwd~~~~-------~~~-~~l~~---h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~ 937 (1097)
..|.-|.+..+ +.+ ..+.. .......|+|.|||.+.++.+..+.- -..........+++.+.. +..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~--~~~~~~~~~~G~ilri~~dG~~ 159 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGND--DNAQDPNSLRGKILRIDPDGSI 159 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTG--GGGCSTTSSTTEEEEEETTSSB
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCc--ccccccccccceEEEecccCcC
Confidence 13444444333 111 22222 12234669999999888877765430 000000000111222111 110
Q ss_pred ---------------C---CccCCeEEEEcCC-CcEEEE--EeCCeEEEEeCCCcce-----------------------
Q 001336 938 ---------------A---SALADTRVQFHLD-QTHLLA--VHETQIAIYEAPKLEC----------------------- 973 (1097)
Q Consensus 938 ---------------~---~~~~v~~l~~s~d-g~~l~~--~~d~~v~vwd~~~~~~----------------------- 973 (1097)
. .......++|+|. |.+.++ +.+..=.|..+..|..
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 0 0022467899999 777666 3343333332322210
Q ss_pred ----eeeeeccCCCCCEEEEEEec-------CCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEE
Q 001336 974 ----LKQFVPREASGPITHATYSC-------DSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAG 1042 (1097)
Q Consensus 974 ----~~~~~~~~h~~~v~~v~~s~-------dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~ 1042 (1097)
...+.. .+...+..+.|-. .|.++++.-..+.|....+.++....... .+..+...++..+ ++
T Consensus 240 ~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~r~~~v--~~ 313 (331)
T PF07995_consen 240 PGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE---EFLGGFGGRPRDV--AQ 313 (331)
T ss_dssp TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---EECTTSSS-EEEE--EE
T ss_pred CCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE---EccccCCCCceEE--EE
Confidence 001111 2345677777764 45566665556778877776553322111 1112233345555 67
Q ss_pred cCCCCCEEEEEecCCcEE
Q 001336 1043 NPTDPNQFALGLTDGGVY 1060 (1097)
Q Consensus 1043 ~p~~~~~l~s~~~Dg~v~ 1060 (1097)
.| ||.++++-+.+|.|+
T Consensus 314 ~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 314 GP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp ET-TSEEEEEE-TTTTEE
T ss_pred cC-CCeEEEEECCCCeEe
Confidence 78 789999888888874
No 391
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.36 E-value=0.91 Score=50.59 Aligned_cols=83 Identities=7% Similarity=0.136 Sum_probs=58.0
Q ss_pred CCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCC-eEEEEEeCCCC-----------------CEEEE
Q 001336 805 PEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPA-ATFLAFHPQDN-----------------NIIAI 865 (1097)
Q Consensus 805 h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~~~-----------------~~la~ 865 (1097)
....+.+++.+|++++.|+.+ -|.|.++|+.++..++.+++-.+. +.-+....... -+++.
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 456688999999999888876 499999999999988888875443 21111111011 13455
Q ss_pred EECCCcEEEEEcccceEEEEec
Q 001336 866 GMEDSSIQIYNVRVDEVKTKLK 887 (1097)
Q Consensus 866 g~~dg~v~vwd~~~~~~~~~l~ 887 (1097)
+-.-|.|.||.+..|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 6678899999998887665543
No 392
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.34 E-value=0.87 Score=46.79 Aligned_cols=201 Identities=15% Similarity=0.158 Sum_probs=120.0
Q ss_pred CCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCcc-ccccCCCCCCCCCeeEEE
Q 001336 735 DNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGIL-MTNDISDTNPEDAVPCFA 813 (1097)
Q Consensus 735 ~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~h~~~v~~l~ 813 (1097)
..+-...++++.|+|+.+.|++......-.|+= ..+|.+ ....+.+ -.....++
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVEl----------------------t~~GdlirtiPL~g---~~DpE~Ie 135 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVEL----------------------TKEGDLIRTIPLTG---FSDPETIE 135 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEE----------------------ecCCceEEEecccc---cCChhHeE
Confidence 345556699999999999999988876655541 122332 2333433 33445678
Q ss_pred EccCCCEEEEEe-CCeEEEEEcCCCceeEE-------eC--CC-CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccce-
Q 001336 814 LSKNDSYVMSAS-GGKISLFNMMTFKTMTT-------FM--PP-PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE- 881 (1097)
Q Consensus 814 ~s~dg~~la~~s-dg~i~iwd~~~~~~~~~-------~~--~~-~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~- 881 (1097)
+..+|++.++-. +..+.++.++....+.. +. .+ +...-.++|+| ....|..+-+-.=+.||.+..+.
T Consensus 136 yig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~ 214 (316)
T COG3204 136 YIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPS 214 (316)
T ss_pred EecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCc
Confidence 888888888777 78888887755432222 11 12 45578899999 66666667666667777765332
Q ss_pred --EEEEecccc-------cCeEEEEEec-CCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCc---cCCeEEEE
Q 001336 882 --VKTKLKGHQ-------KRITGLAFSN-TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASA---LADTRVQF 948 (1097)
Q Consensus 882 --~~~~l~~h~-------~~V~~l~~s~-dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~v~~l~~ 948 (1097)
.+.....+. ..|.++.|.+ .+.+|+-+.+++.+.-.|....- ...+....+..... .....+++
T Consensus 215 ~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~---~~~lsL~~g~~gL~~dipqaEGiam 291 (316)
T COG3204 215 SLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV---IELLSLTKGNHGLSSDIPQAEGIAM 291 (316)
T ss_pred ccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe---eeeEEeccCCCCCcccCCCcceeEE
Confidence 111112222 3466777775 45677777778877777766532 11222222222111 23456788
Q ss_pred cCCCcEEEEEeCCeEE
Q 001336 949 HLDQTHLLAVHETQIA 964 (1097)
Q Consensus 949 s~dg~~l~~~~d~~v~ 964 (1097)
.++|.+-+++.-+-.+
T Consensus 292 Dd~g~lYIvSEPnlfy 307 (316)
T COG3204 292 DDDGNLYIVSEPNLFY 307 (316)
T ss_pred CCCCCEEEEecCCcce
Confidence 8888876666544433
No 393
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.31 E-value=2.6 Score=47.25 Aligned_cols=280 Identities=13% Similarity=0.115 Sum_probs=150.5
Q ss_pred CCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEcc-----CCCEEEEE
Q 001336 750 SGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK-----NDSYVMSA 824 (1097)
Q Consensus 750 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~-----dg~~la~~ 824 (1097)
+...+++|+..|.++||+-....+.+.. .++... -..+|..++.-. +...||+-
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~----------------lllE~~-----l~~PILqv~~G~F~s~~~~~~LaVL 94 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPED----------------LLLETQ-----LKDPILQVECGKFVSGSEDLQLAVL 94 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCcc----------------EEEEEe-----cCCcEEEEEeccccCCCCcceEEEe
Confidence 3467999999999999976433222111 111111 245565554431 34466666
Q ss_pred eCCeEEEEEcCC--Cc-------eeEEeCCCCC--CeEEEEEeCC----CCCEEEEEECCCcEEEEEcccceEEEEeccc
Q 001336 825 SGGKISLFNMMT--FK-------TMTTFMPPPP--AATFLAFHPQ----DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGH 889 (1097)
Q Consensus 825 sdg~i~iwd~~~--~~-------~~~~~~~~~~--~i~~l~~sp~----~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h 889 (1097)
.-.++.||.+.. +. .+..+..|.- ....+++-|- +..++.+-+-||.+.+|+-+.......+.+
T Consensus 95 hP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~- 173 (418)
T PF14727_consen 95 HPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD- 173 (418)
T ss_pred cCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence 677788887721 11 1112222221 1222222221 246889999999999999765444444443
Q ss_pred ccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccc-------------------ceeeEeecCCCCCCccCCeEEEEcC
Q 001336 890 QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQ-------------------ASKFLTIPNGRTASALADTRVQFHL 950 (1097)
Q Consensus 890 ~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~-------------------~~~~~~~~~~~~~~~~~v~~l~~s~ 950 (1097)
.---..+.+.+.-..+++++.+..+.-|....-... ...-....-|... -.+..+.++.
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~--l~i~v~~~~~ 251 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQA--LDIQVVRFSS 251 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCcee--EEEEEEEcCC
Confidence 111234678888888999988888888765320000 0000000111110 1223334444
Q ss_pred CCcEEEEEeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEe----cCCC---EEEEEecCCeEEEEeCCCCceeeeeCC
Q 001336 951 DQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYS----CDSQ---SIYVAFEEGSVGVLTASTLRLRCRINP 1023 (1097)
Q Consensus 951 dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s----~dg~---~l~s~s~Dg~v~vwd~~~~~~~~~~~~ 1023 (1097)
....+++-.++++.+.+.. |......+.... +.....|. .++. .++.++.++++.||.-.+...-+++.
T Consensus 252 ~~~~IvvLger~Lf~l~~~-G~l~~~krLd~~--p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~- 327 (418)
T PF14727_consen 252 SESDIVVLGERSLFCLKDN-GSLRFQKRLDYN--PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP- 327 (418)
T ss_pred CCceEEEEecceEEEEcCC-CeEEEEEecCCc--eeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC-
Confidence 4445555567777777764 555444443221 11111121 2322 47889999999999765544444332
Q ss_pred CCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCC
Q 001336 1024 TAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1066 (1097)
Q Consensus 1024 ~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~ 1066 (1097)
. ..| ++.++..+.-..++++-+.+|.|.+-=+-+
T Consensus 328 -~-------~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 328 -H-------VPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred -C-------CCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 0 112 455554444567999999999999876654
No 394
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.30 E-value=0.01 Score=40.51 Aligned_cols=31 Identities=23% Similarity=0.484 Sum_probs=29.1
Q ss_pred CCCCCEEEEEEecCCCEEEEEecCCeEEEEe
Q 001336 981 EASGPITHATYSCDSQSIYVAFEEGSVGVLT 1011 (1097)
Q Consensus 981 ~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd 1011 (1097)
.|...|.++.|.+++.++++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 6788999999999999999999999999996
No 395
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.016 Score=60.40 Aligned_cols=85 Identities=15% Similarity=0.237 Sum_probs=69.5
Q ss_pred hhhhhhcccChHHHHHHhccccccCCccccceeeehhhHhhhhHHHhcCChhHHHHHHHhccccccccChHHHHHHHHhh
Q 001336 3 YFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLL 82 (1097)
Q Consensus 3 ~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~E~l~~~~~~~a~~~l~~~l~~l~~~~~~~~~~l~~ll 82 (1097)
..+++|++|+...|+.-++.-...-.+. ...+-|.++.|.|+||+..+++.+|+.+.++.|.|...-..+.++....+|
T Consensus 158 ~I~~sll~~~l~~~Lswc~ehk~~LkK~-~S~lEf~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~l 236 (389)
T KOG0396|consen 158 GIRDSLLAGELEPALSWCKEHKVELKKE-ESSLEFQLRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLL 236 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHhc-cchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhh
Confidence 5678999999999998877553221111 222789999999999999999999999999999999887899999999999
Q ss_pred cccccc
Q 001336 83 TLENFR 88 (1097)
Q Consensus 83 ~~~~~~ 88 (1097)
.++...
T Consensus 237 aF~~~t 242 (389)
T KOG0396|consen 237 AFPKYT 242 (389)
T ss_pred cCcccc
Confidence 886554
No 396
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.28 E-value=0.61 Score=45.82 Aligned_cols=47 Identities=17% Similarity=0.245 Sum_probs=40.3
Q ss_pred EEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeC
Q 001336 811 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHP 857 (1097)
Q Consensus 811 ~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp 857 (1097)
.+++..+|.+.++.- .++|...|..+|+.+.+++-+...|+|++|--
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 456677888777776 79999999999999999998999999999964
No 397
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.26 E-value=0.13 Score=57.45 Aligned_cols=158 Identities=12% Similarity=0.122 Sum_probs=91.2
Q ss_pred CCCeEEEEEeCCCCCEEEEEE--CCCcEEEEEcccceEEEEecccccCeEEEEEecCC----CEEEEEeCCCcEEEEEcC
Q 001336 847 PPAATFLAFHPQDNNIIAIGM--EDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTL----NVLVSSGADSQLCVWSTD 920 (1097)
Q Consensus 847 ~~~i~~l~~sp~~~~~la~g~--~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg----~~l~s~~~Dg~i~iwd~~ 920 (1097)
-.++..++|.. +.+.+.+.- .+|.+++=| .+.+..| ..|.++.|+|-+ ..|...-....|.||.+.
T Consensus 19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 35788899984 444444432 333333322 2333333 348899999853 345556678899999987
Q ss_pred CCcccc--eeeEeecCCCCCCccCCeEEEEcCCCcEEEE-EeCCeEEEEeCCCcc--eeeeeeccCCCCCEEEEEEecCC
Q 001336 921 GWEKQA--SKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLE--CLKQFVPREASGPITHATYSCDS 995 (1097)
Q Consensus 921 ~~~~~~--~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~~d~~v~vwd~~~~~--~~~~~~~~~h~~~v~~v~~s~dg 995 (1097)
...... ...-+..+-..+...--..+.|+|....|++ +....-.++++.... ....+. -.+.|.|.+|+.||
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~---~~G~IhCACWT~DG 167 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK---TSGLIHCACWTKDG 167 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc---CCceEEEEEecCcC
Confidence 322222 2222222211111122467889999999988 433333455554333 333332 36789999999999
Q ss_pred CEEEEEecC-CeEEEEeCCCC
Q 001336 996 QSIYVAFEE-GSVGVLTASTL 1015 (1097)
Q Consensus 996 ~~l~s~s~D-g~v~vwd~~~~ 1015 (1097)
++|+++-.. =.-+|||-...
T Consensus 168 ~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CEEEEEeCCeEEEEEecCchh
Confidence 998765432 34568985543
No 398
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.11 Score=57.10 Aligned_cols=144 Identities=12% Similarity=0.098 Sum_probs=97.1
Q ss_pred EEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCE--E-----EEEeCCCcEEEEEcCCCcccceeeEeecC
Q 001336 862 IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNV--L-----VSSGADSQLCVWSTDGWEKQASKFLTIPN 934 (1097)
Q Consensus 862 ~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~--l-----~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~ 934 (1097)
+|..+.....++-.|+..|+.+.+++-|.. |+-+.+.|+.+. | +.|-.|..|+-||..-... ..+....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~---~kl~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK---NKLAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc---ceeeeee
Confidence 444555556788899999999999998877 888888887632 1 2345577899999874221 1233333
Q ss_pred CCCCC-ccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeC
Q 001336 935 GRTAS-ALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTA 1012 (1097)
Q Consensus 935 ~~~~~-~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~ 1012 (1097)
++.-. ...-.|.+-..+|..++.+.+|.|++||- .+...++.. ++-..+|..+..+.||++|+..+ +.++.+-++
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAl-PgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTAL-PGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcc-cccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 33211 12345555566666555579999999998 555444433 25678999999999999988554 667777664
No 399
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.13 E-value=3.1 Score=46.55 Aligned_cols=278 Identities=10% Similarity=0.146 Sum_probs=140.8
Q ss_pred ccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEc---c--CCCEEEEEECC
Q 001336 328 HPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS---P--DGTLFGVAYSK 402 (1097)
Q Consensus 328 spdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---p--d~~~las~~~d 402 (1097)
+++++..+++||..|.++||+...+.......+ +...-..+|..++.- + +...||+ =.-
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~ll---------------lE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP 96 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLL---------------LETQLKDPILQVECGKFVSGSEDLQLAV-LHP 96 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCccEE---------------EEEecCCcEEEEEeccccCCCCcceEEE-ecC
Confidence 344555779999999999999965442211000 012234566666643 2 2334444 455
Q ss_pred CEEEEEEccCC-------eeeeeeeeeecccCcE--EEEEEec----CCCcEEEEEEeCCCcEEEEECCCCceeEEeec-
Q 001336 403 HIVHLYTYHGG-------DELRNHLEIEAHVGSV--NDLAFSY----PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG- 468 (1097)
Q Consensus 403 g~i~iwd~~~~-------~~~~~~~~l~~h~~~V--~~l~~s~----d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~- 468 (1097)
..+.||.+... .... ...+..|.-.- ..+..-| .++. +++.=+.||.+.+++-+.-...+.+.+
T Consensus 97 ~kl~vY~v~~~~g~~~~g~~~~-L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~ 174 (418)
T PF14727_consen 97 RKLSVYSVSLVDGTVEHGNQYQ-LELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDF 174 (418)
T ss_pred CEEEEEEEEecCCCcccCcEEE-EEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCC
Confidence 67888887321 1111 11222343222 2222222 2223 788999999999999544333333333
Q ss_pred -CCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCc-----------------------eeeecCCCC--ceEEEEE
Q 001336 469 -HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-----------------------RVDYDAPGH--SSTMMAY 522 (1097)
Q Consensus 469 -h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------------------~~~~~~~~~--~v~~~~~ 522 (1097)
..++ ++|.+.. +.+++++.+..+..|....... .+.+..... .|..+.+
T Consensus 175 llPgP---l~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~ 249 (418)
T PF14727_consen 175 LLPGP---LCYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRF 249 (418)
T ss_pred CCCcC---eEEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEc
Confidence 2344 4444444 4688888888888886531100 011111111 2333334
Q ss_pred ccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcC----CC---CEEEEEeCCCcEEEEECCCCce
Q 001336 523 SADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT----TK---NRFLAAGDEFMIKFWDMDNVNL 595 (1097)
Q Consensus 523 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~----~~---~~l~~~~~dg~i~iwd~~~~~~ 595 (1097)
+.....+++-+ +..+...+.. |.+....+- .-.+.....|.. ++ ..++.++.++++.||.= .++
T Consensus 250 ~~~~~~IvvLg-----er~Lf~l~~~-G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L 320 (418)
T PF14727_consen 250 SSSESDIVVLG-----ERSLFCLKDN-GSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTL 320 (418)
T ss_pred CCCCceEEEEe-----cceEEEEcCC-CeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeE
Confidence 43334444443 3356666653 443322222 111222222211 22 24888899999999863 333
Q ss_pred EEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 596 LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 596 ~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
+.........-.+.-..|..-...|++-+.+|.+.+-=+.+.
T Consensus 321 ~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 321 VWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 333332211111222223334568889999999988766665
No 400
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.075 Score=63.21 Aligned_cols=104 Identities=19% Similarity=0.220 Sum_probs=78.8
Q ss_pred CCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCc
Q 001336 392 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES 471 (1097)
Q Consensus 392 d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 471 (1097)
.+..++.|+..|.|-..|+... +.....-..-.++|++++|+.+|. .++.|-.+|.|.+||+.+++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 5667899999999999888764 222111223457899999999999 789999999999999999999999988888
Q ss_pred CeEEEeecc-cCCccEEEEEcCCCeEEEEEc
Q 001336 472 PVYSICPHH-KENIQFIFSTATDGKIKAWLY 501 (1097)
Q Consensus 472 ~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~ 501 (1097)
+.+++-+.. ..++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 877764332 233356888888776 5654
No 401
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=0.056 Score=64.25 Aligned_cols=101 Identities=16% Similarity=0.288 Sum_probs=74.4
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCce-eEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeE
Q 001336 817 NDSYVMSAS-GGKISLFNMMTFKT-MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRIT 894 (1097)
Q Consensus 817 dg~~la~~s-dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~ 894 (1097)
.+..++.++ .|.+-..|....-. ...=..-.++|++++|+. +|++++.|-.+|.|.+||...++.++.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 455677777 57788887754211 111122357899999999 999999999999999999999999999888887776
Q ss_pred EEEEe---cCCCEEEEEeCCCcEEEEEcC
Q 001336 895 GLAFS---NTLNVLVSSGADSQLCVWSTD 920 (1097)
Q Consensus 895 ~l~~s---~dg~~l~s~~~Dg~i~iwd~~ 920 (1097)
++-+. .++..+.++..-|. +|++.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 65543 45667888777775 66654
No 402
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.05 E-value=5.6 Score=48.68 Aligned_cols=198 Identities=13% Similarity=0.139 Sum_probs=114.1
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeecCCcC--------eEEEeeccc--------------CCccEEEEEcCCCeEEEE
Q 001336 442 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESP--------VYSICPHHK--------------ENIQFIFSTATDGKIKAW 499 (1097)
Q Consensus 442 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~--------v~~~~~~~~--------------~~~~~l~s~~~dg~i~iw 499 (1097)
.++.++.++.|.-.|..+|+.+-++...... ...+++... ..+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4677777788888888888877665432210 111222211 123478888899999999
Q ss_pred EcCCCCceeeecCCCC--------ce----EEEEEcc--CCCEEEEeeeCCC------CCceEEEEeCCCCeeeEEecCC
Q 001336 500 LYDNLGSRVDYDAPGH--------SS----TMMAYSA--DGARLFSCGTNKE------GESYLVEWNESEGAVKRTYHGL 559 (1097)
Q Consensus 500 d~~~~~~~~~~~~~~~--------~v----~~~~~s~--~~~~l~~~~~~~~------~~~~i~~wd~~~~~~~~~~~~~ 559 (1097)
|.++++....+...+. .. ..+.-+| .+..+++++...+ ..+.|+-+|.++|+++-.+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9988887765432111 00 0111112 2335555543222 2567999999999887766421
Q ss_pred C----------------Ccce-EEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCceEEEEecCCC
Q 001336 560 G----------------KRSV-GVVQFDTTKNRFLAAG------------------DEFMIKFWDMDNVNLLASIDADGG 604 (1097)
Q Consensus 560 ~----------------~~~v-~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~ 604 (1097)
. ...+ ...++.++...++.+. ..+.|.-.|.++|+..-.++...|
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 0 0011 2234555544444422 235677788889988877754221
Q ss_pred C-------CCcceEEEcC-CCC---EEEEEECCCcEEEEEcCCCce
Q 001336 605 L-------QASPCIRFNK-EGI---LLAVSTNDNGIKILANADGIR 639 (1097)
Q Consensus 605 ~-------~~v~~v~~s~-~~~---~l~s~~~dg~i~iw~~~~~~~ 639 (1097)
. ....-+.+.. +|+ .++.++.+|.+.++|..+|+.
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 1 0111222322 453 788999999999999999943
No 403
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.98 E-value=0.66 Score=47.64 Aligned_cols=170 Identities=9% Similarity=0.096 Sum_probs=110.7
Q ss_pred ecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEE
Q 001336 886 LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIA 964 (1097)
Q Consensus 886 l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~ 964 (1097)
+.+-...+.++.|+|+.+.|++......-.+|=...|+......+.-. .....+.+.-+|++.++- .++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-------~DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-------SDPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-------CChhHeEEecCCEEEEEehhcceEE
Confidence 345455599999999999999988888777776666664433322221 224568888888888874 678888
Q ss_pred EEeCCCcceee-----eeec--cCC-CCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCc--
Q 001336 965 IYEAPKLECLK-----QFVP--REA-SGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLR-- 1034 (1097)
Q Consensus 965 vwd~~~~~~~~-----~~~~--~~h-~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~-- 1034 (1097)
++.++....+. .+.. ..+ +...-.++|++.+..|..+-+-+-+.||.+..+.--... .+...++..
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~----~~~~~~~~~~~ 229 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSV----HASLDPTADRD 229 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccc----ccccCcccccc
Confidence 88777553221 1221 122 567889999999999999998888888887643311000 111122222
Q ss_pred --eeeE-EEEEcCCCCCEEEEEecCCcEEEEecCC
Q 001336 1035 --VYPL-VIAGNPTDPNQFALGLTDGGVYIIEPLE 1066 (1097)
Q Consensus 1035 --v~~l-~i~~~p~~~~~l~s~~~Dg~v~~W~~~~ 1066 (1097)
+..+ .+.|++..+.+|+-+.+++.|..-|...
T Consensus 230 ~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 230 LFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred eEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 2222 3477777788888888888877766653
No 404
>PHA02713 hypothetical protein; Provisional
Probab=95.89 E-value=0.44 Score=56.56 Aligned_cols=192 Identities=7% Similarity=0.018 Sum_probs=93.8
Q ss_pred CCCcEEEEEEeCC------CcEEEEECCCCceeEE--eecCCcCeEEEeecccCCccEEEEEcCCC-----eEEEEEcCC
Q 001336 437 PNKQLSVVTCGED------RVIKVWDAVTGTKQYI--FEGHESPVYSICPHHKENIQFIFSTATDG-----KIKAWLYDN 503 (1097)
Q Consensus 437 d~~~~~l~s~s~d------~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~ 503 (1097)
++. +++.||.+ ..+..||..+...... +....... +++. -+|.+.+.||.++ .+..||..+
T Consensus 303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~---~~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV---IDDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE---ECCEEEEECCcCCCCCCceEEEEECCC
Confidence 455 66667653 3577888877754321 11111111 1221 2336667777654 477888775
Q ss_pred CCceeeecCCCCceEEEEEccCCCEEEEeeeCCCC-------------------CceEEEEeCCCCeeeEEecCCCCcce
Q 001336 504 LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG-------------------ESYLVEWNESEGAVKRTYHGLGKRSV 564 (1097)
Q Consensus 504 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-------------------~~~i~~wd~~~~~~~~~~~~~~~~~v 564 (1097)
..-...-..........+..-+|+..+.||.++.. ...+..||..+.+-...-.-... ..
T Consensus 377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r~ 455 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG-TI 455 (557)
T ss_pred CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc-cc
Confidence 43222111111111111112367777777654211 23578899887643322111111 11
Q ss_pred EEEEEcCCCCEEEEEeCC------CcEEEEECCC-CceEEEEecCCCCCCcceEEEcCCCCEEEEEECCC--cEEEEEcC
Q 001336 565 GVVQFDTTKNRFLAAGDE------FMIKFWDMDN-VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN--GIKILANA 635 (1097)
Q Consensus 565 ~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg--~i~iw~~~ 635 (1097)
......-++...+.||.+ ..+..||..+ .+-...-...........+.+ ++...++|+.++ .+..||..
T Consensus 456 ~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 456 RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence 111122345666667643 2467899887 443322222111222223333 578888898888 66667766
Q ss_pred CC
Q 001336 636 DG 637 (1097)
Q Consensus 636 ~~ 637 (1097)
++
T Consensus 534 ~~ 535 (557)
T PHA02713 534 TY 535 (557)
T ss_pred cc
Confidence 65
No 405
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.82 E-value=0.91 Score=53.76 Aligned_cols=236 Identities=12% Similarity=0.073 Sum_probs=128.0
Q ss_pred ccCCCEEEEEe-C------CeEEEEEcCCCceeEEeCC-CCCCeEEEEEeCCCCCEEEEEECC-C-----cEEEEEcccc
Q 001336 815 SKNDSYVMSAS-G------GKISLFNMMTFKTMTTFMP-PPPAATFLAFHPQDNNIIAIGMED-S-----SIQIYNVRVD 880 (1097)
Q Consensus 815 s~dg~~la~~s-d------g~i~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~~la~g~~d-g-----~v~vwd~~~~ 880 (1097)
+..+.+++.|+ . ..+..||..+++-.....- ....-.++++. ++.+.++|+.| | ++..||..+.
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 33455666665 4 3488888877643222211 22234555555 56899999999 3 6778887765
Q ss_pred eE--EEEecccccCeEEEEEecCCCEEEEEeCCCc-----EEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCc
Q 001336 881 EV--KTKLKGHQKRITGLAFSNTLNVLVSSGADSQ-----LCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQT 953 (1097)
Q Consensus 881 ~~--~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 953 (1097)
+= +..+......... -.-+|...|+||.||. |-.||..+.+-. ....... . .-..-.-.-+|+
T Consensus 360 ~W~~~a~M~~~R~~~~v--~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~---~va~m~~-~----r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGV--AVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT---PVAPMLT-R----RSGHGVAVLGGK 429 (571)
T ss_pred ceeccCCccCcccccee--EEECCEEEEEeccccccccccEEEecCCCCccc---ccCCCCc-c----eeeeEEEEECCE
Confidence 42 2222222111111 1236888899999974 667777765422 1111110 0 011122233555
Q ss_pred EEEE-EeC------CeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCC-----eEEEEeCCCCceeeee
Q 001336 954 HLLA-VHE------TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEG-----SVGVLTASTLRLRCRI 1021 (1097)
Q Consensus 954 ~l~~-~~d------~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg-----~v~vwd~~~~~~~~~~ 1021 (1097)
..++ |.+ .++..||..+++-...-... ..+...-.-.-++.+.+.|+.|+ +|..||..+.+....
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~--~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v- 506 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN--TRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV- 506 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCcc--cccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEc-
Confidence 5555 322 46889998876543322210 11111113344778888888776 377788877665432
Q ss_pred CCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCC-----cEEEEecCCCCcccCCCCC
Q 001336 1022 NPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDG-----GVYIIEPLEAEGRWGTSPP 1076 (1097)
Q Consensus 1022 ~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg-----~v~~W~~~~~~~~~~~~~~ 1076 (1097)
. ....+ .+.+ .+++. ++.+.++|+.|| +|..||+...+ |...++
T Consensus 507 ~-~m~~~---rs~~-g~~~~----~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 507 A-PMTSP---RSAV-GVVVL----GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred c-cCccc---cccc-cEEEE----CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 1 11011 1111 12222 678899999886 58888887765 988888
No 406
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.67 E-value=1.5 Score=48.04 Aligned_cols=190 Identities=16% Similarity=0.196 Sum_probs=97.2
Q ss_pred EEEccCCCEEEEEe---C----CeEEEEEcCCCceeEEeCCCCC---CeEEEEEeCCCCCEEEEEEC-------------
Q 001336 812 FALSKNDSYVMSAS---G----GKISLFNMMTFKTMTTFMPPPP---AATFLAFHPQDNNIIAIGME------------- 868 (1097)
Q Consensus 812 l~~s~dg~~la~~s---d----g~i~iwd~~~~~~~~~~~~~~~---~i~~l~~sp~~~~~la~g~~------------- 868 (1097)
+..-|+|..++++- + |.+.++|-++.+.......... --..+-|.| ..+.+++...
T Consensus 135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~ 213 (461)
T PF05694_consen 135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPE 213 (461)
T ss_dssp EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TT
T ss_pred eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChh
Confidence 44457898888763 2 4588999988888877764332 245667777 6667766532
Q ss_pred -------CCcEEEEEcccceEEEEecccc--cCeEEEEEecC--CCE-EEEEeCCCcEEEE-EcCCCcccceeeEeecCC
Q 001336 869 -------DSSIQIYNVRVDEVKTKLKGHQ--KRITGLAFSNT--LNV-LVSSGADSQLCVW-STDGWEKQASKFLTIPNG 935 (1097)
Q Consensus 869 -------dg~v~vwd~~~~~~~~~l~~h~--~~V~~l~~s~d--g~~-l~s~~~Dg~i~iw-d~~~~~~~~~~~~~~~~~ 935 (1097)
..++.+||+.+.+.++++.--. .....|.|..+ ..+ ++.+.-..+|..| ..+.++-...+++.++..
T Consensus 214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~ 293 (461)
T PF05694_consen 214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK 293 (461)
T ss_dssp THHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred HhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence 3579999999999999887533 23456777654 333 3333334445444 335555555566666543
Q ss_pred CCCC-------------ccCCeEEEEcCCCcEEEEE--eCCeEEEEeCCCc---ceeeeeeccCC--------------C
Q 001336 936 RTAS-------------ALADTRVQFHLDQTHLLAV--HETQIAIYEAPKL---ECLKQFVPREA--------------S 983 (1097)
Q Consensus 936 ~~~~-------------~~~v~~l~~s~dg~~l~~~--~d~~v~vwd~~~~---~~~~~~~~~~h--------------~ 983 (1097)
.... ..-++.+.+|.|.++|.++ ..|.|+.||+..- +.+.+....+- .
T Consensus 294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~ 373 (461)
T PF05694_consen 294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLR 373 (461)
T ss_dssp E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------
T ss_pred ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccC
Confidence 2100 1347899999999999996 7899999999854 33333332221 2
Q ss_pred CCEEEEEEecCCCEEEEEe
Q 001336 984 GPITHATYSCDSQSIYVAF 1002 (1097)
Q Consensus 984 ~~v~~v~~s~dg~~l~s~s 1002 (1097)
+...-+..|-||++|...+
T Consensus 374 GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 374 GGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp S----EEE-TTSSEEEEE-
T ss_pred CCCCeEEEccCCeEEEEEe
Confidence 2346788999999887554
No 407
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.66 E-value=0.58 Score=40.75 Aligned_cols=102 Identities=16% Similarity=0.162 Sum_probs=65.1
Q ss_pred eeEEEE---ccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEE
Q 001336 322 VKSMDF---HPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 398 (1097)
Q Consensus 322 V~~v~f---spdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 398 (1097)
|+++++ .-||..-|++||.|..|+||+-.. .+.. ..-.+.|++++-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~E--------------------i~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAE--------------------ITETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEE--------------------EecccceEEEEEcCC-CEEEE
Confidence 444444 456666778999999999998553 2221 123567888887766 66999
Q ss_pred EECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEec---CCCcEEEEEEeCCCcEE
Q 001336 399 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY---PNKQLSVVTCGEDRVIK 453 (1097)
Q Consensus 399 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~---d~~~~~l~s~s~d~~i~ 453 (1097)
+-.+|+|-+|+-... +-+ .+.. ..++++++.. ||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~R--lWR---iKSK-~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQR--LWR---IKSK-NQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcce--eee---eccC-CCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 999999999976432 111 2222 2255555543 3333 588888887663
No 408
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.62 E-value=4.6 Score=44.45 Aligned_cols=58 Identities=17% Similarity=0.083 Sum_probs=35.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEE-ec-CCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001336 573 KNRFLAAGDEFMIKFWDMDNVNLLASI-DA-DGGLQASPCIRFNKEGILLAVSTNDNGIK 630 (1097)
Q Consensus 573 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~-~~~~~~v~~v~~s~~~~~l~s~~~dg~i~ 630 (1097)
+.+|++.-..+.|....++.+..+... .. ......+..+++.|||.+.++-..+|.|+
T Consensus 271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 345555556678888887754333222 11 12223678999999999888888788764
No 409
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.55 E-value=0.045 Score=39.47 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=29.9
Q ss_pred CCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCe
Q 001336 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD 414 (1097)
Q Consensus 380 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~ 414 (1097)
....|.+++|+|...+||.|+.+|.|.++.+ +++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 3457999999999999999999999999998 443
No 410
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.34 E-value=0.054 Score=53.04 Aligned_cols=104 Identities=15% Similarity=0.211 Sum_probs=71.6
Q ss_pred CCEEEEEe-CCeEEEEEcCCC-ceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccc-cCeE
Q 001336 818 DSYVMSAS-GGKISLFNMMTF-KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQ-KRIT 894 (1097)
Q Consensus 818 g~~la~~s-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~-~~V~ 894 (1097)
+..+++|. +|.|.+|...-. .....+..-...|.++.-.-+++.+..++..||.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 44566665 999999887521 11111211223344433333256689999999999999999888888877788 6677
Q ss_pred EEEEecCCCEEEEE--eCCCcEEEEEcCC
Q 001336 895 GLAFSNTLNVLVSS--GADSQLCVWSTDG 921 (1097)
Q Consensus 895 ~l~~s~dg~~l~s~--~~Dg~i~iwd~~~ 921 (1097)
.+..+..+.+++++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 77777777788877 8888888888766
No 411
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.33 E-value=3 Score=42.99 Aligned_cols=191 Identities=9% Similarity=0.072 Sum_probs=109.4
Q ss_pred CccceEEEEEccCCceeeeeccCc--EEEEeccCCCCCCccCccccccCCcccCCCCCccc-cccCCCCCCCCCeeEEEE
Q 001336 738 TAMRVSRLIYTNSGLAILALASNA--VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILM-TNDISDTNPEDAVPCFAL 814 (1097)
Q Consensus 738 ~~~~i~~l~~spdg~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~h~~~v~~l~~ 814 (1097)
...-...+.|..+|..+-+.+.-| .++.+ |+.+|+.. ...++ ....-..++.
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~----------------------d~~tg~~~~~~~l~---~~~FgEGit~ 97 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKV----------------------DLETGKVLQSVPLP---PRYFGEGITI 97 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEEEE----------------------ETTTSSEEEEEE-T---TT--EEEEEE
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEEEE----------------------ECCCCcEEEEEECC---ccccceeEEE
Confidence 445677888988998888888866 44444 45555543 22232 2334445555
Q ss_pred ccCCCEEEEEeCCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccc----
Q 001336 815 SKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQ---- 890 (1097)
Q Consensus 815 s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~---- 890 (1097)
..|.-+..+--++...+||..+.+.+.++.- .+.=..++. +++.|+..+....++++|..+-+....+....
T Consensus 98 ~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~p 173 (264)
T PF05096_consen 98 LGDKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRP 173 (264)
T ss_dssp ETTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE
T ss_pred ECCEEEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEE
Confidence 5443333333489999999999999988863 455566663 56677777667789999988876665554321
Q ss_pred -cCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeec-------CCCCCCccCCeEEEEcCCCcEEEEE
Q 001336 891 -KRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIP-------NGRTASALADTRVQFHLDQTHLLAV 958 (1097)
Q Consensus 891 -~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~v~~l~~s~dg~~l~~~ 958 (1097)
..++-+.+- +|...|=.=....|..-|..+|+.....-+.-. ....+...-...+++.|....+.++
T Consensus 174 v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 174 VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp ---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence 235556665 565555444555677778888775443211111 1111112457889998887766664
No 412
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.29 E-value=9.9 Score=46.21 Aligned_cols=104 Identities=12% Similarity=0.140 Sum_probs=64.5
Q ss_pred EEEccCCCEEEEEeCCeEEEEEcCCCceeEEeCC--CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEc--ccceEEEEec
Q 001336 812 FALSKNDSYVMSASGGKISLFNMMTFKTMTTFMP--PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNV--RVDEVKTKLK 887 (1097)
Q Consensus 812 l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~--~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~--~~~~~~~~l~ 887 (1097)
.++.|-+.++.+|-+..+++||+...++++..+. -...|+.+.+. +..+++|+.--.|..+.. ...+.+ .+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~-~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLI-VFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEE-EEe
Confidence 4666777788888899999999987776665432 24567778774 567888876655655444 333433 332
Q ss_pred c--cccCeEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 001336 888 G--HQKRITGLAFSNTLNVLVSSGADSQLCVWSTD 920 (1097)
Q Consensus 888 ~--h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~ 920 (1097)
. -...|+++.+- |-..+|.+..=|.+.+-.+.
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 2 22336666555 44466666665666555543
No 413
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.29 E-value=0.052 Score=39.16 Aligned_cols=33 Identities=27% Similarity=0.591 Sum_probs=28.8
Q ss_pred CCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCc
Q 001336 319 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE 353 (1097)
Q Consensus 319 ~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~ 353 (1097)
...|.+++|+|... |+|.|+.+|.|.|+.+ +++
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCc
Confidence 45799999999998 7899999999999998 443
No 414
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.25 E-value=1.3 Score=43.75 Aligned_cols=142 Identities=13% Similarity=0.117 Sum_probs=84.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccc--------cCeEEEEEecCCCEE-EEEeCCCcEEEEE-
Q 001336 849 AATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQ--------KRITGLAFSNTLNVL-VSSGADSQLCVWS- 918 (1097)
Q Consensus 849 ~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~--------~~V~~l~~s~dg~~l-~s~~~Dg~i~iwd- 918 (1097)
..+.-..+| +|++.+---.|-. .++....|++..-+.+|. +--+.++|+.|.+.+ ++-+.+-.|.-||
T Consensus 110 R~NDgkvdP-~Gryy~GtMad~~-~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 110 RLNDGKVDP-DGRYYGGTMADFG-DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred ccccCccCC-CCceeeeeecccc-ccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 455566788 8888443222211 122222333333333332 223568888777654 4566677787788
Q ss_pred -cCCCcccceeeE-eecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecC
Q 001336 919 -TDGWEKQASKFL-TIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPREASGPITHATYSCD 994 (1097)
Q Consensus 919 -~~~~~~~~~~~~-~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~d 994 (1097)
..+|.....+.+ .+.............++...+|++.++. ..++|...|..+|+.+..+... ...|+++||-..
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~qitsccFgGk 264 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--TPQITSCCFGGK 264 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--CCceEEEEecCC
Confidence 666665443332 2222111111223456677788877775 7789999999999999988754 689999999643
No 415
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.23 E-value=0.56 Score=54.77 Aligned_cols=112 Identities=16% Similarity=0.220 Sum_probs=76.9
Q ss_pred cEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEee-cCCcCeEEEeecccCCccEEEEEcCCCeEEEEEc-----
Q 001336 428 SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-GHESPVYSICPHHKENIQFIFSTATDGKIKAWLY----- 501 (1097)
Q Consensus 428 ~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~----- 501 (1097)
..+-+.-|.-++ ..+.-+....+.|||...+...++-. ...+.|.++.|...++|+.+++.|..+.|.+|--
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344455555555 34444445589999998887554322 4578899999999999999999999999999842
Q ss_pred CCCCc----e--eeec-CCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeC
Q 001336 502 DNLGS----R--VDYD-APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 547 (1097)
Q Consensus 502 ~~~~~----~--~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 547 (1097)
..... . ..+. ...++|.+..|.++|..++.+|. ++.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN------qlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN------QLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC------EEEEECC
Confidence 11111 1 1122 23468999999999988877642 5888774
No 416
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.10 E-value=5.3 Score=48.87 Aligned_cols=204 Identities=13% Similarity=0.096 Sum_probs=114.1
Q ss_pred CCEEEEEECCCEEEEEEccCCeeeeeeeeeecccC------cEEEEEEe----------------cCCCcEEEEEEeCCC
Q 001336 393 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVG------SVNDLAFS----------------YPNKQLSVVTCGEDR 450 (1097)
Q Consensus 393 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~------~V~~l~~s----------------~d~~~~~l~s~s~d~ 450 (1097)
+..|..++.++.|.-.|..+|+.+-+... ..... ....+++. ..+. .++.++.|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~-~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~--rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDP-KLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR--RIILPTSDA 270 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcC-CCCcccccccccccceEEecCCcccccccccccccccCC--EEEEecCCC
Confidence 55666677777787788888776543211 11000 01112221 1233 578888999
Q ss_pred cEEEEECCCCceeEEeecCCcCeE-------------EEeecccCCccEEEEEcC----------CCeEEEEEcCCCCce
Q 001336 451 VIKVWDAVTGTKQYIFEGHESPVY-------------SICPHHKENIQFIFSTAT----------DGKIKAWLYDNLGSR 507 (1097)
Q Consensus 451 ~i~iwd~~~~~~~~~~~~h~~~v~-------------~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~ 507 (1097)
.+.-.|.++|+.+..+.. .+.|. .+.-.+.-.+..++.|+. +|.|+-+|.++++..
T Consensus 271 ~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999999999876632 22221 000001001235666642 688999999999888
Q ss_pred eeecCCC---------C--------ce-EEEEEccCCCEEEEeeeC--------------CCCCceEEEEeCCCCeeeEE
Q 001336 508 VDYDAPG---------H--------SS-TMMAYSADGARLFSCGTN--------------KEGESYLVEWNESEGAVKRT 555 (1097)
Q Consensus 508 ~~~~~~~---------~--------~v-~~~~~s~~~~~l~~~~~~--------------~~~~~~i~~wd~~~~~~~~~ 555 (1097)
..+.... . .+ ..++++++...++....+ +.-...|.-.|.++|+..-.
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 7754310 0 11 234455555554443211 11134567778888887776
Q ss_pred ecC-CCC-------cceEEEEEcC-CCC---EEEEEeCCCcEEEEECCCCceEEEEe
Q 001336 556 YHG-LGK-------RSVGVVQFDT-TKN---RFLAAGDEFMIKFWDMDNVNLLASID 600 (1097)
Q Consensus 556 ~~~-~~~-------~~v~~~~~~~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 600 (1097)
++. |++ ....-+.+.. +|+ .++.++.+|.++++|.++|+++....
T Consensus 430 ~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 655 221 0011122322 442 67778888889999988888876654
No 417
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.91 E-value=0.06 Score=52.75 Aligned_cols=110 Identities=8% Similarity=0.061 Sum_probs=63.3
Q ss_pred EEE-EeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCC
Q 001336 955 LLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSL 1033 (1097)
Q Consensus 955 l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~ 1033 (1097)
+++ +.+|.|++|..............+-......+.-..++.+..+++.||.|+.|++.-++.++......+
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~------- 145 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF------- 145 (238)
T ss_pred EEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccC-------
Confidence 444 689999999987332222222222223333344445666888999999999999998887766552221
Q ss_pred ceeeEEEEEcCCCCCEEEEEecCCcEEEEecC--CCCcccCCCCCCCCCCC
Q 001336 1034 RVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL--EAEGRWGTSPPNENGAG 1082 (1097)
Q Consensus 1034 ~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~--~~~~~~~~~~~~~~~~~ 1082 (1097)
.++..+++.+.|+.|.+|+++ .....|.|-+=.+.+++
T Consensus 146 -----------~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~~i 185 (238)
T KOG2444|consen 146 -----------ESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDESPI 185 (238)
T ss_pred -----------CCcceeEEecCCceEEeeccccchhhhhcchhhhhccCcc
Confidence 123455555555555555333 23334555554444443
No 418
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.85 E-value=6.7 Score=41.97 Aligned_cols=153 Identities=17% Similarity=0.178 Sum_probs=81.5
Q ss_pred CCCCeeEEEEccCCCEEEEEeCCe-EEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEE-cccceE
Q 001336 805 PEDAVPCFALSKNDSYVMSASGGK-ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYN-VRVDEV 882 (1097)
Q Consensus 805 h~~~v~~l~~s~dg~~la~~sdg~-i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd-~~~~~~ 882 (1097)
....+..+..++||+++++++.|. +.-||--...-...-+.....|..+.|.| ++.+.+++ ..|.|+.=+ ....+.
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCccc
Confidence 456788899999999999999655 55777532111122222467899999999 77666644 888888876 222222
Q ss_pred EEE----ecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE
Q 001336 883 KTK----LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV 958 (1097)
Q Consensus 883 ~~~----l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~ 958 (1097)
-.. +..-.-.+..++|.+++...++|+ .|++ +...+.++ .++......... ..+..+.|.++.+-++.+
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGk--tW~~~~~~~~~~---~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGK--TWQKDRVGENVP---SNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTS--S-EE-GGGTTSS---S---EEEEEETTEEEEE-
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCc--cceECccccCCC---CceEEEEEcCCCceEEEC
Confidence 111 111223378899999887777665 4533 34555554 122222111111 457889998888888889
Q ss_pred eCCeEEEE
Q 001336 959 HETQIAIY 966 (1097)
Q Consensus 959 ~d~~v~vw 966 (1097)
.+|.+.-|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 88887655
No 419
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.65 E-value=4.7 Score=41.03 Aligned_cols=206 Identities=13% Similarity=0.107 Sum_probs=137.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccee
Q 001336 849 AATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASK 928 (1097)
Q Consensus 849 ~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~ 928 (1097)
.-..++-+| ||..-.++...|.|-=.|..+|+....--+....-..|..-|||...++-+.. -|.-.|-++.+. .
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev---t 137 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV---T 137 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce---E
Confidence 345677788 88888888888888888999998776655555566778889999887765544 466667666553 3
Q ss_pred eEeecCCCCCCccCCeEEEEcCCCcEEEEEeCC----------eEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEE
Q 001336 929 FLTIPNGRTASALADTRVQFHLDQTHLLAVHET----------QIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSI 998 (1097)
Q Consensus 929 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~----------~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l 998 (1097)
.+.++..+.. .......|.++|++-+++..| .|++|+.. ....-..++.+|||..-
T Consensus 138 ~f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------qG~gpyGi~atpdGsvw 203 (353)
T COG4257 138 RFPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------QGGGPYGICATPDGSVW 203 (353)
T ss_pred EeecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------CCCCCcceEECCCCcEE
Confidence 3444443333 667889999999988885332 35555544 23456778999999998
Q ss_pred EEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCCCcccCCCCCCC
Q 001336 999 YVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNE 1078 (1097)
Q Consensus 999 ~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~~~~~~~~~~~~ 1078 (1097)
++.-.++.|..-|-.++.. ..+..+.-+ |.+. ..+ --+| -+..-++....++++-+|.+... |..=|-..
T Consensus 204 yaslagnaiaridp~~~~a-ev~p~P~~~---~~gs-Rri--wsdp-ig~~wittwg~g~l~rfdPs~~s--W~eypLPg 273 (353)
T COG4257 204 YASLAGNAIARIDPFAGHA-EVVPQPNAL---KAGS-RRI--WSDP-IGRAWITTWGTGSLHRFDPSVTS--WIEYPLPG 273 (353)
T ss_pred EEeccccceEEcccccCCc-ceecCCCcc---cccc-ccc--ccCc-cCcEEEeccCCceeeEeCccccc--ceeeeCCC
Confidence 8877888888877766622 222222211 2221 111 2223 46778888888888888888766 87776665
Q ss_pred CCCCC
Q 001336 1079 NGAGP 1083 (1097)
Q Consensus 1079 ~~~~~ 1083 (1097)
..+-+
T Consensus 274 s~arp 278 (353)
T COG4257 274 SKARP 278 (353)
T ss_pred CCCCc
Confidence 54443
No 420
>PRK13684 Ycf48-like protein; Provisional
Probab=94.61 E-value=8.9 Score=42.24 Aligned_cols=156 Identities=10% Similarity=0.069 Sum_probs=90.0
Q ss_pred CCCeEEEEEeCCCCCEEEEEECCCcEEE-EEcccceEEEE-ecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcc
Q 001336 847 PPAATFLAFHPQDNNIIAIGMEDSSIQI-YNVRVDEVKTK-LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEK 924 (1097)
Q Consensus 847 ~~~i~~l~~sp~~~~~la~g~~dg~v~v-wd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~ 924 (1097)
...+..+.+.| ++.+++++. .|.+.. ++ ..++.-.. -..-...++++.+.++++.++. +..|.+++=..+.++
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~- 246 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLE- 246 (334)
T ss_pred cceEEEEEECC-CCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCC-
Confidence 45688999998 777766654 554443 22 22221111 2233456889999999887665 456765432233332
Q ss_pred cceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeeeeec-cCCCCCEEEEEEecCCCEEEEEec
Q 001336 925 QASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVP-REASGPITHATYSCDSQSIYVAFE 1003 (1097)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~-~~h~~~v~~v~~s~dg~~l~s~s~ 1003 (1097)
.+.....+.... ...+..+.+.+++..++++.+|.+.. ..+.++.-..... .+-......+.|..+++.++ ++.
T Consensus 247 -sW~~~~~~~~~~--~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~ 321 (334)
T PRK13684 247 -SWSKPIIPEITN--GYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQ 321 (334)
T ss_pred -ccccccCCcccc--ccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECC
Confidence 111111111101 13467889999998888888876653 4455554333321 11134678888887777766 556
Q ss_pred CCeEEEEeC
Q 001336 1004 EGSVGVLTA 1012 (1097)
Q Consensus 1004 Dg~v~vwd~ 1012 (1097)
.|.|..|+-
T Consensus 322 ~G~il~~~~ 330 (334)
T PRK13684 322 RGVLLRYVG 330 (334)
T ss_pred CceEEEecC
Confidence 788887763
No 421
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.46 E-value=1 Score=52.72 Aligned_cols=119 Identities=10% Similarity=0.152 Sum_probs=76.9
Q ss_pred CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEec-ccccCeEEEEEe--cCCCEEEEEeCCCcEEEEEcCCC
Q 001336 846 PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK-GHQKRITGLAFS--NTLNVLVSSGADSQLCVWSTDGW 922 (1097)
Q Consensus 846 ~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~-~h~~~V~~l~~s--~dg~~l~s~~~Dg~i~iwd~~~~ 922 (1097)
.-..++.+.-|. -++..++-+....+.|||...+....+-. ...+.|.++.|. |||+.+.+.|....|.++.-...
T Consensus 28 ~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 28 GISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY 106 (631)
T ss_pred CCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch
Confidence 334455555555 45555554455589999999887543322 356889999986 79999999999999999864321
Q ss_pred ----cccc---eeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCC
Q 001336 923 ----EKQA---SKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAP 969 (1097)
Q Consensus 923 ----~~~~---~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~ 969 (1097)
+... .+.+.+. .+.+ .+|....|.++|.++ ++.++++.|+|-.
T Consensus 107 dy~~~~p~w~~i~~i~i~-~~T~--h~Igds~Wl~~G~Lv-V~sGNqlfv~dk~ 156 (631)
T PF12234_consen 107 DYTNKGPSWAPIRKIDIS-SHTP--HPIGDSIWLKDGTLV-VGSGNQLFVFDKW 156 (631)
T ss_pred hhhcCCcccceeEEEEee-cCCC--CCccceeEecCCeEE-EEeCCEEEEECCC
Confidence 1111 1222222 2222 468899999999754 4567888888754
No 422
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.27 E-value=17 Score=44.24 Aligned_cols=178 Identities=13% Similarity=0.073 Sum_probs=102.1
Q ss_pred cEEEEEcccceEEEEecccc----cCeEEEEEecCCC--EEEEEeC-----------CCcEEEEEcCCCcccceeeEeec
Q 001336 871 SIQIYNVRVDEVKTKLKGHQ----KRITGLAFSNTLN--VLVSSGA-----------DSQLCVWSTDGWEKQASKFLTIP 933 (1097)
Q Consensus 871 ~v~vwd~~~~~~~~~l~~h~----~~V~~l~~s~dg~--~l~s~~~-----------Dg~i~iwd~~~~~~~~~~~~~~~ 933 (1097)
.|+++|..+++.+..+.... -.|..+.|+.... +++.++. +|.++.|++-.... .+...
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~----~lell 929 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGD----KLELL 929 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCc----eeeee
Confidence 48899988887665554222 2466677765433 3333322 34455565543221 11111
Q ss_pred CCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEE--Ee
Q 001336 934 NGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGV--LT 1011 (1097)
Q Consensus 934 ~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~v--wd 1011 (1097)
.... -.-.-.++.|-..+++++....+++||+...+.++..+...-...|+.+++- +.++++|...-.|.. |+
T Consensus 930 h~T~---~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 930 HKTE---IPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred eccC---CCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEe
Confidence 1111 1123356777777888999999999999988887776653446778888875 557887776655554 44
Q ss_pred CCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCC
Q 001336 1012 ASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEA 1067 (1097)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~ 1067 (1097)
-+..+++--...+. --.|..+.+- |-+.++.+..=|.+.+-.++..
T Consensus 1005 ~~~n~l~~fadD~~------pR~Vt~~~~l----D~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1005 REDNQLIVFADDPV------PRHVTALELL----DYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred cCCCeEEEEeCCCc------cceeeEEEEe----cCCceeeccccCcEEEEECCCc
Confidence 33443332222111 1223333322 5677888888888887777643
No 423
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=2.3 Score=41.26 Aligned_cols=178 Identities=10% Similarity=0.045 Sum_probs=97.4
Q ss_pred CCCEEEEEe---CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCe
Q 001336 817 NDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRI 893 (1097)
Q Consensus 817 dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V 893 (1097)
+|.++.+.+ ...|++||+.+++.+..-.-....+..=-...-+..+.+..-.||.-.+||.++.+++.++. -.+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 455665554 35699999999988776543322222111111033445555678899999999988776654 23444
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-EeCCeEEEEeCCCcc
Q 001336 894 TGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLE 972 (1097)
Q Consensus 894 ~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~~d~~v~vwd~~~~~ 972 (1097)
+.++ .|+..|+.++...+++.-|.++-.......+ ..++... ..+.-+.|- ||...|- =....|...|.++|+
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~V-T~~g~pv--~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQV-TDDGVPV--SKLNELEWV-DGELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEE-EECCeec--ccccceeee-ccEEEEeeeeecceEEEcCCCCc
Confidence 5554 3566677666566677777666332221111 1111111 112222332 3333332 244556666666776
Q ss_pred eeeeeec----------cCCCCCEEEEEEecCC-CEEEEE
Q 001336 973 CLKQFVP----------REASGPITHATYSCDS-QSIYVA 1001 (1097)
Q Consensus 973 ~~~~~~~----------~~h~~~v~~v~~s~dg-~~l~s~ 1001 (1097)
.+.-+.. ..|..-.+.+++.|++ ++++||
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 6555442 2245567789999887 555555
No 424
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.18 E-value=9.4 Score=40.85 Aligned_cols=231 Identities=12% Similarity=0.058 Sum_probs=108.2
Q ss_pred CeeEEEEccCCCEEEEEeCCeEEEEEcCCCceeEEeC---CCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEccc-ceE-
Q 001336 808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFM---PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-DEV- 882 (1097)
Q Consensus 808 ~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~-~~~- 882 (1097)
...++.|..+ ..++++..+ +.+...+.++.=..+. .-++....+.... ++..++ ++..|. ||...+ |+.
T Consensus 63 ~l~~I~f~~~-~g~ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~--iy~T~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGA--IYRTTDGGKTW 136 (302)
T ss_dssp EEEEEEEETT-EEEEEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT----EEEESSTTSSE
T ss_pred eEEEEEecCC-ceEEEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCc--EEEeCCCCCCe
Confidence 4567777643 455555555 3334444443322221 1223334444433 333333 344554 333332 221
Q ss_pred EEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCe
Q 001336 883 KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQ 962 (1097)
Q Consensus 883 ~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~ 962 (1097)
......-.+.+..+.-++||++++++..-..+.-||-.... +........ ..|..+.|+|++.+.+++..+.
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~~~-----~riq~~gf~~~~~lw~~~~Gg~ 208 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRNSS-----RRIQSMGFSPDGNLWMLARGGQ 208 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE--SS-----S-EEEEEE-TTS-EEEEETTTE
T ss_pred eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccCcc-----ceehhceecCCCCEEEEeCCcE
Confidence 12223445778899999999988887665555677754321 222222211 4699999999999888888888
Q ss_pred EEEEe-CCCcceeee--eeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEE
Q 001336 963 IAIYE-APKLECLKQ--FVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLV 1039 (1097)
Q Consensus 963 v~vwd-~~~~~~~~~--~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 1039 (1097)
|++=+ ....+.... .....-.-.+..++|.+++...|+|+ .|.+ +...+.|+.-.+......+| +..+.+
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~----~n~~~i- 281 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVP----SNLYRI- 281 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSS----S---EE-
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCC----CceEEE-
Confidence 88877 222222211 11111234589999999988888666 4443 34566666655444322222 335555
Q ss_pred EEEcCCCCCEEEEEecCCcEEEE
Q 001336 1040 IAGNPTDPNQFALGLTDGGVYII 1062 (1097)
Q Consensus 1040 i~~~p~~~~~l~s~~~Dg~v~~W 1062 (1097)
.|.+ ++.-...+.||-|-=|
T Consensus 282 -~f~~--~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 282 -VFVN--PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp -EEEE--TTEEEEE-STTEEEEE
T ss_pred -EEcC--CCceEEECCCcEEEEe
Confidence 5654 2455556677765433
No 425
>PHA03098 kelch-like protein; Provisional
Probab=93.95 E-value=2.6 Score=50.26 Aligned_cols=193 Identities=10% Similarity=0.013 Sum_probs=91.4
Q ss_pred cCCCEEEEEECCC------EEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCC-----CcEEEEECCC
Q 001336 391 PDGTLFGVAYSKH------IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RVIKVWDAVT 459 (1097)
Q Consensus 391 pd~~~las~~~dg------~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d-----~~i~iwd~~~ 459 (1097)
.++..++.||.++ .+..||..+++- .....+.........+. -+++ +++.||.+ ..+..||..+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~R~~~~~~~--~~~~--lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSW-NKVPELIYPRKNPGVTV--FNNR--IYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCee-eECCCCCcccccceEEE--ECCE--EEEEeCCCCCEecceEEEEcCCC
Confidence 4666777776543 467788877653 22222221112222222 2455 66667755 3577888877
Q ss_pred CceeEEeecCCcC-eEEEeecccCCccEEEEEcCC------CeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEe
Q 001336 460 GTKQYIFEGHESP-VYSICPHHKENIQFIFSTATD------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC 532 (1097)
Q Consensus 460 ~~~~~~~~~h~~~-v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 532 (1097)
++....-.-.... -.+++. -++.+.+.||.+ +.+..||..+..-...-..........+...+++..+.|
T Consensus 368 ~~W~~~~~lp~~r~~~~~~~---~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 444 (534)
T PHA03098 368 SKWREEPPLIFPRYNPCVVN---VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIG 444 (534)
T ss_pred CceeeCCCcCcCCccceEEE---ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEEC
Confidence 6543311111111 111221 133566666632 457788876543222111111111111223356666666
Q ss_pred eeCCCC----CceEEEEeCCCCeeeEE--ecCCCCcceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc
Q 001336 533 GTNKEG----ESYLVEWNESEGAVKRT--YHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVN 594 (1097)
Q Consensus 533 ~~~~~~----~~~i~~wd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 594 (1097)
|.+... -..+..||..+.+-... +..... ....+.+ ++..++.||.+ ..|.+||..+.+
T Consensus 445 G~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 445 GISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRI-NASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CccCCCCCcccceEEEecCCCCceeeCCCCCcccc-cceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 643221 12488899887643322 111111 1122222 56666777643 467888877654
No 426
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=93.89 E-value=23 Score=44.22 Aligned_cols=27 Identities=19% Similarity=0.055 Sum_probs=20.1
Q ss_pred cCccceEEEEEccCCceeeeeccCcEE
Q 001336 737 LTAMRVSRLIYTNSGLAILALASNAVH 763 (1097)
Q Consensus 737 ~~~~~i~~l~~spdg~~l~~~~~dg~i 763 (1097)
.+-+.+.+++.+|||...++-..+-.|
T Consensus 659 A~lnsp~alaVsPdg~v~IAD~gN~rI 685 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIADSGNSRI 685 (1899)
T ss_pred cccCCcceEEECCCCcEEEecCCchhh
Confidence 356778899999999977766555333
No 427
>PHA03098 kelch-like protein; Provisional
Probab=93.86 E-value=2.2 Score=50.90 Aligned_cols=180 Identities=7% Similarity=-0.033 Sum_probs=81.8
Q ss_pred cEEEEECCCCceeEEe--ecCCcCeEEEeecccCCccEEEEEcCC-----CeEEEEEcCCCCceeeecCCCCceEEEEEc
Q 001336 451 VIKVWDAVTGTKQYIF--EGHESPVYSICPHHKENIQFIFSTATD-----GKIKAWLYDNLGSRVDYDAPGHSSTMMAYS 523 (1097)
Q Consensus 451 ~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 523 (1097)
.+..||..+++....- .........+.+ ++.+.+.||.+ ..+..||..+..-...-..........+..
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~----~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~ 387 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVF----NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN 387 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEE----CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE
Confidence 4677887776553211 111111111221 33667777765 346677766543222111111111111122
Q ss_pred cCCCEEEEeeeCCCC--CceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCC--------CcEEEEECCCC
Q 001336 524 ADGARLFSCGTNKEG--ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE--------FMIKFWDMDNV 593 (1097)
Q Consensus 524 ~~~~~l~~~~~~~~~--~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~ 593 (1097)
-+++..+.||....+ ...+..||+.+.+-...-..... .....+...++..++.||.+ ..+.+||..++
T Consensus 388 ~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 388 VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS-HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc-ccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 356666766643221 24688899887643322111111 11111222345566666632 23888898876
Q ss_pred ceEEEEecCCCCCCcceEEEcCCCCEEEEEECC-----CcEEEEEcCCC
Q 001336 594 NLLASIDADGGLQASPCIRFNKEGILLAVSTND-----NGIKILANADG 637 (1097)
Q Consensus 594 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d-----g~i~iw~~~~~ 637 (1097)
+-...-...........+.+ ++..++.|+.+ +.+.+||..+.
T Consensus 467 ~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 467 KWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred ceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 54332211111111112222 56677777654 46777777655
No 428
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.67 E-value=1.6 Score=47.21 Aligned_cols=160 Identities=14% Similarity=0.091 Sum_probs=99.7
Q ss_pred CCCCeeEEEEccCCCEEEEEeCCeEEEEEcCCCcee-EEe-CCCCC----CeE-EEEEeCCCCCEEEEEECCCcEEEE-E
Q 001336 805 PEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM-TTF-MPPPP----AAT-FLAFHPQDNNIIAIGMEDSSIQIY-N 876 (1097)
Q Consensus 805 h~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~-~~~-~~~~~----~i~-~l~~sp~~~~~la~g~~dg~v~vw-d 876 (1097)
...++..+-..|||+.+..-+..++.++++.+.... +.+ ....+ .|+ .+..-. ++.-|.++..||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 456778888999999999988889999988654321 111 11122 122 222223 67778888999988877 4
Q ss_pred cccc-e----EEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCC
Q 001336 877 VRVD-E----VKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD 951 (1097)
Q Consensus 877 ~~~~-~----~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 951 (1097)
+..+ . .++.++-...++..+.--.+.+-+++-...|++.++.....+. +.... -. ..+..+++||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~-----lL~~~-~~---~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL-----LLFER-AY---QAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc-----eehhh-hh---cCcceeeeCcc
Confidence 3322 1 2222332233444443333445677788888888876554331 11111 00 34677999999
Q ss_pred CcEEEEEeCCeEEEEeCCCccee
Q 001336 952 QTHLLAVHETQIAIYEAPKLECL 974 (1097)
Q Consensus 952 g~~l~~~~d~~v~vwd~~~~~~~ 974 (1097)
+.+|++-..|.|+++.+++....
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRNPE 391 (733)
T ss_pred cchheeecCCceEEEEecCCCCC
Confidence 99999988899999998865443
No 429
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.65 E-value=0.65 Score=56.01 Aligned_cols=146 Identities=13% Similarity=0.079 Sum_probs=95.7
Q ss_pred CCCeeEEEEccCCCEEEEEe--C-CeEEEEEcCCCceeE-----EeCCC------CCCeEEEEEeCCCCCEEEEEECCCc
Q 001336 806 EDAVPCFALSKNDSYVMSAS--G-GKISLFNMMTFKTMT-----TFMPP------PPAATFLAFHPQDNNIIAIGMEDSS 871 (1097)
Q Consensus 806 ~~~v~~l~~s~dg~~la~~s--d-g~i~iwd~~~~~~~~-----~~~~~------~~~i~~l~~sp~~~~~la~g~~dg~ 871 (1097)
.-+|..++..+|++..++.. + ..|..||+.+...-. .+..| ..-..++.|.|.-....|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 45667788888988776654 3 368999986543221 12222 2335778888744445677788999
Q ss_pred EEEEEcccce-EEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcC
Q 001336 872 IQIYNVRVDE-VKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHL 950 (1097)
Q Consensus 872 v~vwd~~~~~-~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 950 (1097)
|+|..+.... ....+ .-....++++|+|.|+.++.|-..|++.-|...-.... .+.-+.... ...|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~e--~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVEE--NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcCC--CcceeEEEEec
Confidence 9998775432 12222 24456899999999999999999999998876553211 111111111 25689999988
Q ss_pred CCcEEEE
Q 001336 951 DQTHLLA 957 (1097)
Q Consensus 951 dg~~l~~ 957 (1097)
...+|++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 8888877
No 430
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.42 E-value=11 Score=39.27 Aligned_cols=225 Identities=16% Similarity=0.165 Sum_probs=126.2
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEcc------cc-eEEEEecc-----cccCeEEEEEecCCC------------EE
Q 001336 850 ATFLAFHPQDNNIIAIGMEDSSIQIYNVR------VD-EVKTKLKG-----HQKRITGLAFSNTLN------------VL 905 (1097)
Q Consensus 850 i~~l~~sp~~~~~la~g~~dg~v~vwd~~------~~-~~~~~l~~-----h~~~V~~l~~s~dg~------------~l 905 (1097)
-..++++| .+.+.++....+...+||.. .. .++-.+.. -.+..+.+.|+.... .+
T Consensus 25 ~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 46799999 78888888888899999986 11 22333331 124567777764322 25
Q ss_pred EEEeCCCcEEEEEcCCCcccc-eeeEeecCCCCCCccCCeEEEEcC--CCcEEEEE--eCCeEEEEeCCCccee--eeee
Q 001336 906 VSSGADSQLCVWSTDGWEKQA-SKFLTIPNGRTASALADTRVQFHL--DQTHLLAV--HETQIAIYEAPKLECL--KQFV 978 (1097)
Q Consensus 906 ~s~~~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~l~~s~--dg~~l~~~--~d~~v~vwd~~~~~~~--~~~~ 978 (1097)
+.+++||+|.-|...-+.... ...+.+..+.. ..--..+++-. .+.+|..+ ..++|.|||-.-.... ..+.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~--gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQ--GNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCC--cceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 678899999999865433210 01122222211 12335566653 36677765 6799999987643321 1111
Q ss_pred cc----CC----------CCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEE---
Q 001336 979 PR----EA----------SGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIA--- 1041 (1097)
Q Consensus 979 ~~----~h----------~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~--- 1041 (1097)
.. +. .--|+-..-.+++..=+.+.--|.|-+||. .|+++.|+.....+ +.=+.|+++
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~L-----NaPWG~a~APa~ 255 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRL-----NAPWGLAIAPES 255 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcc-----cCCceeeeChhh
Confidence 00 00 001111111222222233334578999996 56788888744433 223444332
Q ss_pred EcCCCCCEEEEEecCCcEEEEecCCCC----------------cccCCCCCCCCCCCC
Q 001336 1042 GNPTDPNQFALGLTDGGVYIIEPLEAE----------------GRWGTSPPNENGAGP 1083 (1097)
Q Consensus 1042 ~~p~~~~~l~s~~~Dg~v~~W~~~~~~----------------~~~~~~~~~~~~~~~ 1083 (1097)
|=.-.+.+|+---.||+|..+|..+++ +-|...+.......+
T Consensus 256 FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~ 313 (336)
T TIGR03118 256 FGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGS 313 (336)
T ss_pred hCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCC
Confidence 111146799988889999999987555 336666666544444
No 431
>PRK13684 Ycf48-like protein; Provisional
Probab=93.28 E-value=15 Score=40.35 Aligned_cols=158 Identities=9% Similarity=-0.035 Sum_probs=87.9
Q ss_pred ccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCC
Q 001336 890 QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAP 969 (1097)
Q Consensus 890 ~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~ 969 (1097)
.+.+.++.+.+++.+++++ ..|.+.. ....+. ..+..+.... . ..+..+.+.++++.++++..|.+.+=..+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg-~tW~~~~~~~--~---~~l~~i~~~~~g~~~~vg~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQ-TAWTPHQRNS--S---RRLQSMGFQPDGNLWMLARGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEE-EcCCCC-CeEEEeeCCC--c---ccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence 4568899999988666554 4564432 211111 1122222211 1 45889999999998888877876543345
Q ss_pred Ccceeeeeecc--CCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCC
Q 001336 970 KLECLKQFVPR--EASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDP 1047 (1097)
Q Consensus 970 ~~~~~~~~~~~--~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~ 1047 (1097)
.|+.-...... .-...+.++.+.+++..++ ++.+|.|. ...+.++..........+ ....+.+ .|.. +
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~----~~~~~~~--~~~~--~ 313 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEV----PSNFYKI--VFLD--P 313 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCC----CcceEEE--EEeC--C
Confidence 44433322111 1124578899999887665 55677654 455555554333211111 1234444 4433 3
Q ss_pred CEEEEEecCCcEEEEecC
Q 001336 1048 NQFALGLTDGGVYIIEPL 1065 (1097)
Q Consensus 1048 ~~l~s~~~Dg~v~~W~~~ 1065 (1097)
+.....+..|.|.-|+-.
T Consensus 314 ~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 314 EKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred CceEEECCCceEEEecCC
Confidence 445667888888877643
No 432
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.20 E-value=19 Score=41.15 Aligned_cols=59 Identities=8% Similarity=0.100 Sum_probs=43.0
Q ss_pred eEEEEcCCCcEEEEE--eCCeEEEEeCCC--cceeeeeeccCCCCCEEEEEEecCCCEEEEEec
Q 001336 944 TRVQFHLDQTHLLAV--HETQIAIYEAPK--LECLKQFVPREASGPITHATYSCDSQSIYVAFE 1003 (1097)
Q Consensus 944 ~~l~~s~dg~~l~~~--~d~~v~vwd~~~--~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~ 1003 (1097)
.-++|+|....++++ .-+.|.||.+.. ...+..+.... ..+-..++|-.|.-+|+..+.
T Consensus 342 DliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~-~ERPKGiCFltdklLLilVGk 404 (671)
T PF15390_consen 342 DLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLES-NERPKGICFLTDKLLLILVGK 404 (671)
T ss_pred ceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEccc-CCCCceeeEccCCeEEEEecc
Confidence 458999999999996 447899999864 23344444423 677889999988887776653
No 433
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.09 E-value=12 Score=38.37 Aligned_cols=195 Identities=8% Similarity=0.080 Sum_probs=107.3
Q ss_pred EEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEE
Q 001336 744 RLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMS 823 (1097)
Q Consensus 744 ~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~ 823 (1097)
.+..-|||..-++-+..+..++ +.++.+.....++............|.+.|.+-.+
T Consensus 108 giv~gpdg~~Witd~~~aI~R~-----------------------dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt 164 (353)
T COG4257 108 GIVVGPDGSAWITDTGLAIGRL-----------------------DPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFT 164 (353)
T ss_pred eEEECCCCCeeEecCcceeEEe-----------------------cCcccceEEeecccccCCCcccceeeCCCccEEEe
Confidence 4556677765555544444443 55555555555554334566788999999999998
Q ss_pred EeCCeEEEEEcCCCceeEEeCCC-CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccce--EEEEecccccCeEEEEEec
Q 001336 824 ASGGKISLFNMMTFKTMTTFMPP-PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE--VKTKLKGHQKRITGLAFSN 900 (1097)
Q Consensus 824 ~sdg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~--~~~~l~~h~~~V~~l~~s~ 900 (1097)
+..|.---.|-.+ ..+.++... ...-..++..| +|...++.-.+..|-..|..++. .+-.-.+-...-..+--+|
T Consensus 165 ~q~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atp-dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdp 242 (353)
T COG4257 165 GQIGAYGRLDPAR-NVISVFPAPQGGGPYGICATP-DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDP 242 (353)
T ss_pred eccccceecCccc-CceeeeccCCCCCCcceEECC-CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCc
Confidence 8643221112211 122333222 23456778888 77777776667777777766652 2211122112234455567
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-EeCCeEEEEeCCC
Q 001336 901 TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPK 970 (1097)
Q Consensus 901 dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~~d~~v~vwd~~~ 970 (1097)
.|..-+|....+.+..+|..... +....++.... .-.++.....++.-.. ...+.|.-+|-++
T Consensus 243 ig~~wittwg~g~l~rfdPs~~s---W~eypLPgs~a----rpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 243 IGRAWITTWGTGSLHRFDPSVTS---WIEYPLPGSKA----RPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred cCcEEEeccCCceeeEeCccccc---ceeeeCCCCCC----CcceeeeccCCcEEeeccccCceeecCccc
Confidence 88888887777888888876633 33333333222 2344555555544333 3344455555443
No 434
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.04 E-value=4.9 Score=46.84 Aligned_cols=184 Identities=13% Similarity=0.175 Sum_probs=98.8
Q ss_pred eEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEE--e--cccccCeEEEEEecCCC
Q 001336 828 KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK--L--KGHQKRITGLAFSNTLN 903 (1097)
Q Consensus 828 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~--l--~~h~~~V~~l~~s~dg~ 903 (1097)
.|+||++ +|+.+..+.-..+.+..+.|+. + .-|++...+|+++||++.. +.+.. . ......|..+.|..+|-
T Consensus 65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs~-~-eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNI-SGQLLGRILWKHGELIGMGWSD-D-EELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEec-cccchHHHHhcCCCeeeecccC-C-ceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCce
Confidence 4888887 5666665544455889999996 4 4666678999999999863 32222 1 12234466666666664
Q ss_pred EEEEEeCCCcEEE-EEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcE--EEEEeCCe--EEEEeCCCcce-eeee
Q 001336 904 VLVSSGADSQLCV-WSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTH--LLAVHETQ--IAIYEAPKLEC-LKQF 977 (1097)
Q Consensus 904 ~l~s~~~Dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~--l~~~~d~~--v~vwd~~~~~~-~~~~ 977 (1097)
.+.+ .+|.+.+ -+.+...... .-.++... ..-.+...-+++.. +...-+-. ..++..+.+.. ...+
T Consensus 141 avlt--~~g~v~~i~~~~~~~~~~--~~diP~~~----~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 141 AVLT--VSGQVILINGVEEPKLRK--MPDIPYNE----LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EEEe--cCCcEEEEcCCCcchhhh--CCCCCCcc----CCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence 4443 3444433 3333211111 11111111 11123332222221 11111100 11111111111 1111
Q ss_pred eccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCC
Q 001336 978 VPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTA 1025 (1097)
Q Consensus 978 ~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~ 1025 (1097)
. .-.+.+..+..||+.++|+-=..+|.|.+-..+..+..|.+....
T Consensus 213 ~--~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~ 258 (829)
T KOG2280|consen 213 S--WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTD 258 (829)
T ss_pred C--CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCC
Confidence 1 113678899999999999999999999999998888888877444
No 435
>PHA02790 Kelch-like protein; Provisional
Probab=92.61 E-value=4.5 Score=47.22 Aligned_cols=183 Identities=10% Similarity=-0.011 Sum_probs=88.7
Q ss_pred CCCEEEEEe-C-----CeEEEEEcCCCceeE--EeCCCCCCeEEEEEeCCCCCEEEEEECCC--cEEEEEcccceE--EE
Q 001336 817 NDSYVMSAS-G-----GKISLFNMMTFKTMT--TFMPPPPAATFLAFHPQDNNIIAIGMEDS--SIQIYNVRVDEV--KT 884 (1097)
Q Consensus 817 dg~~la~~s-d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~~~~~la~g~~dg--~v~vwd~~~~~~--~~ 884 (1097)
++.++++|+ + .++..||..+.+-.. .+.........++ - ++.+.++|+.++ .+..||..+++- +.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 455556665 3 246778877654322 2211111222222 2 678888888643 678888765432 22
Q ss_pred EecccccCeEEEEEecCCCEEEEEeCCC---cEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCC
Q 001336 885 KLKGHQKRITGLAFSNTLNVLVSSGADS---QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHET 961 (1097)
Q Consensus 885 ~l~~h~~~V~~l~~s~dg~~l~s~~~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~ 961 (1097)
.+.. ..-......-+|+..+.||.++ .+..||..+.+ +....... .+ . -...+..-+|+..+.| |
T Consensus 348 ~l~~--~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~---W~~~~~m~--~~--r-~~~~~~~~~~~IYv~G--G 415 (480)
T PHA02790 348 SLLK--PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ---WQFGPSTY--YP--H-YKSCALVFGRRLFLVG--R 415 (480)
T ss_pred CCCC--CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE---EEeCCCCC--Cc--c-ccceEEEECCEEEEEC--C
Confidence 2221 1111122234677888888654 46678877644 22211111 00 0 1112223455554544 4
Q ss_pred eEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecC-----CeEEEEeCCCCc
Q 001336 962 QIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEE-----GSVGVLTASTLR 1016 (1097)
Q Consensus 962 ~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~D-----g~v~vwd~~~~~ 1016 (1097)
.+.+||.++.+-...-.. .+ .....-+..-+|+..+.|+.+ .+|.+||..+++
T Consensus 416 ~~e~ydp~~~~W~~~~~m-~~-~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDP-IY-PRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ceEEecCCCCcEeEcCCC-CC-CccccEEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 577888876543211111 11 111122223477888888754 356667766554
No 436
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.60 E-value=0.021 Score=61.66 Aligned_cols=238 Identities=16% Similarity=0.199 Sum_probs=134.2
Q ss_pred EEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEE
Q 001336 744 RLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMS 823 (1097)
Q Consensus 744 ~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~ 823 (1097)
...+.+.+..++.++.+..+..||-.. ...... ...+....++|..+|..++.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~ag----------------------q~~le~-----n~tg~aldm~wDkegdvlav 91 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAG----------------------QVILEL-----NPTGKALDMAWDKEGDVLAV 91 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhc----------------------ceeccc-----CCchhHhhhhhccccchhhh
Confidence 445667777788888887777775332 111111 13445566788888877766
Q ss_pred Ee--CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecC
Q 001336 824 AS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNT 901 (1097)
Q Consensus 824 ~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d 901 (1097)
.. .+.+.+||+.+...-..-.+-...-.-+.|++ +...++.+...|.+.|++..+.+.+...-.|..+++++++.+.
T Consensus 92 lAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE 170 (615)
T KOG2247|consen 92 LAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE 170 (615)
T ss_pred hhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEeccc
Confidence 54 68899999965432221112222233378999 8999999999999999998887766666569999999999988
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccC---CeEEEEcCCCcEEEEEeCCeEEEE--eCC--Cccee
Q 001336 902 LNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALA---DTRVQFHLDQTHLLAVHETQIAIY--EAP--KLECL 974 (1097)
Q Consensus 902 g~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---v~~l~~s~dg~~l~~~~d~~v~vw--d~~--~~~~~ 974 (1097)
+ +.+.++.|..+.+-...+.... ...+ +..+.... ...=.|..-|..+.....+.+.+. .+. .+...
T Consensus 171 d-~vil~dcd~~L~v~~qegeta~---ltev--ggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pva 244 (615)
T KOG2247|consen 171 D-YVILCDCDNTLSVTTQEGETAS---LTEV--GGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVA 244 (615)
T ss_pred c-eeeecCcHHHHHHhhhccceee---eeec--cCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccc
Confidence 7 4555666665544333321110 1111 10100000 011123333444433222221111 111 11111
Q ss_pred eeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCcee
Q 001336 975 KQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLR 1018 (1097)
Q Consensus 975 ~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~ 1018 (1097)
..+. .-.+.+.|+.|--||.++. +-.-|.|..-.+.++++.
T Consensus 245 l~fq--~~~gni~cyrwylDg~i~i-gf~ag~iV~iS~h~aeLg 285 (615)
T KOG2247|consen 245 LQFQ--EKYGNIHCYRWYLDGYILI-GFDAGYIVSISAHNAELG 285 (615)
T ss_pred eEee--ecCCceeEEEEeccccccc-cccceeEEEEeccchHHH
Confidence 1232 3357888999988886554 555566666667766653
No 437
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.24 E-value=4.2 Score=45.62 Aligned_cols=104 Identities=10% Similarity=0.079 Sum_probs=57.3
Q ss_pred cCeEEEEEecCCCEEEEEe-----------CCC-cEEEEEcCCC--cccceeeEeecCCCCCCccCCeEEEEcCCCcEEE
Q 001336 891 KRITGLAFSNTLNVLVSSG-----------ADS-QLCVWSTDGW--EKQASKFLTIPNGRTASALADTRVQFHLDQTHLL 956 (1097)
Q Consensus 891 ~~V~~l~~s~dg~~l~s~~-----------~Dg-~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 956 (1097)
.....|+|.++|+++++-. ..+ .|.+++-..+ +......+ ..+. .....+++.++| +++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf--a~~l----~~p~Gi~~~~~G-lyV 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF--AEEL----SMVTGLAVAVGG-VYV 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe--ecCC----CCccceeEecCC-EEE
Confidence 3456789999998877653 223 6777765432 22222222 1211 235779999999 444
Q ss_pred EEeCCeEEEE-eCCCc-----c--ee-eeeeccC--CCCCEEEEEEecCCCEEEEEe
Q 001336 957 AVHETQIAIY-EAPKL-----E--CL-KQFVPRE--ASGPITHATYSCDSQSIYVAF 1002 (1097)
Q Consensus 957 ~~~d~~v~vw-d~~~~-----~--~~-~~~~~~~--h~~~v~~v~~s~dg~~l~s~s 1002 (1097)
+....|..| |.+.. + .+ ..+.... +......++|.|||.+.++.+
T Consensus 87 -~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 87 -ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred -eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 444455544 54321 1 11 1122110 234577899999999877655
No 438
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.24 E-value=0.28 Score=57.35 Aligned_cols=163 Identities=15% Similarity=0.196 Sum_probs=93.2
Q ss_pred CCCeeEEEEc----cCCCeEEEEEeCCCeEEEEEcC--CCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc-
Q 001336 319 GSAVKSMDFH----PVQQILLVVGTNMGDVMLWEVG--SRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP- 391 (1097)
Q Consensus 319 ~~~V~~v~fs----pdg~~lla~gs~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp- 391 (1097)
.+.|-.++|- |.+.. .-|...|||+. .|+......+++ ...-...+.-|.|.|
T Consensus 132 ~G~v~dl~fah~~~pk~~~------~vg~lfVy~vd~l~G~iq~~l~v~~--------------~~p~gs~~~~V~wcp~ 191 (1283)
T KOG1916|consen 132 PGGVGDLQFAHTKCPKGRR------LVGELFVYDVDVLQGEIQPQLEVTP--------------ITPYGSDPQLVSWCPI 191 (1283)
T ss_pred CCCcccccccccCChHHHH------HhhhhheeehHhhccccccceEEee--------------cCcCCCCcceeeeccc
Confidence 4556666663 33331 23678899876 444433322222 222233444555554
Q ss_pred --CCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEE-----------EecCCCcEEEEEEeCCCcEEEEECC
Q 001336 392 --DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLA-----------FSYPNKQLSVVTCGEDRVIKVWDAV 458 (1097)
Q Consensus 392 --d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~-----------~s~d~~~~~l~s~s~d~~i~iwd~~ 458 (1097)
+..++..+-.++.|++..+.+... . .+.+|...++.++ .||||+ .+++++.||.++.|-+.
T Consensus 192 ~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 192 AVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeeee
Confidence 677888888899988877665432 1 2556887776665 488999 89999999988887653
Q ss_pred -----CCceeEEeecCCc-CeEEEeecccCC-------ccEEEEEc-CCCeEEEEEcCCCCce
Q 001336 459 -----TGTKQYIFEGHES-PVYSICPHHKEN-------IQFIFSTA-TDGKIKAWLYDNLGSR 507 (1097)
Q Consensus 459 -----~~~~~~~~~~h~~-~v~~~~~~~~~~-------~~~l~s~~-~dg~i~iwd~~~~~~~ 507 (1097)
.-+|++.++.|.+ +-.|.-++.... -.++++++ .+..+++|.-...++.
T Consensus 266 i~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 266 ITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3356677777773 322222221110 12344443 3456778865544443
No 439
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.23 E-value=34 Score=41.68 Aligned_cols=94 Identities=12% Similarity=0.105 Sum_probs=56.7
Q ss_pred CCCCeeEEEEccCCCEEEEEeCCeEEEEEcCC-CceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEE
Q 001336 805 PEDAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK 883 (1097)
Q Consensus 805 h~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~ 883 (1097)
....|..+.++++|+++|..+...|.|..+.. +.....+++....|.|=.+.= +..++
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~-------------------- 141 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFF-------------------- 141 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhc--------------------
Confidence 45689999999999999999866666666532 111122322222333322221 11111
Q ss_pred EEecccccCeEEEEEecC---CCEEEEEeCCCcEEEEEcCC
Q 001336 884 TKLKGHQKRITGLAFSNT---LNVLVSSGADSQLCVWSTDG 921 (1097)
Q Consensus 884 ~~l~~h~~~V~~l~~s~d---g~~l~s~~~Dg~i~iwd~~~ 921 (1097)
...+...|..+.|+|. +.+|+.-..|+++++||+..
T Consensus 142 --~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 142 --TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred --cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 0123455777888875 47788888888999999864
No 440
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.96 E-value=22 Score=38.98 Aligned_cols=163 Identities=11% Similarity=0.117 Sum_probs=92.1
Q ss_pred CCCeEEEEEeCCCCCEEEEEECCCc------EEEEEccc--c--eEE-----EEeccccc--------CeEEEEEecCCC
Q 001336 847 PPAATFLAFHPQDNNIIAIGMEDSS------IQIYNVRV--D--EVK-----TKLKGHQK--------RITGLAFSNTLN 903 (1097)
Q Consensus 847 ~~~i~~l~~sp~~~~~la~g~~dg~------v~vwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~s~dg~ 903 (1097)
-+.+..+.+.++++ .+++.+.+|. ++.+++.. + ..+ ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 45688899986344 4455566666 66555543 1 111 11221111 233788888888
Q ss_pred EEEEEeCC------CcEEEEEcCCCcccceeeEeecC---------CCCCCccCCeEEEEcCCCcEEEEE------eCC-
Q 001336 904 VLVSSGAD------SQLCVWSTDGWEKQASKFLTIPN---------GRTASALADTRVQFHLDQTHLLAV------HET- 961 (1097)
Q Consensus 904 ~l~s~~~D------g~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~v~~l~~s~dg~~l~~~------~d~- 961 (1097)
++++.=.+ ..|..++.. ++.... +.++. ..........+++++|||+.|++. .|+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~--~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRR--FPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP 174 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-Ccccce--EccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence 88876666 677777766 443221 22222 112233678899999999955542 232
Q ss_pred -e-------EEE--EeCCC-cceeeeeeccC-------CCCCEEEEEEecCCCEEEEEe-----cCCeEEEEeCC
Q 001336 962 -Q-------IAI--YEAPK-LECLKQFVPRE-------ASGPITHATYSCDSQSIYVAF-----EEGSVGVLTAS 1013 (1097)
Q Consensus 962 -~-------v~v--wd~~~-~~~~~~~~~~~-------h~~~v~~v~~s~dg~~l~s~s-----~Dg~v~vwd~~ 1013 (1097)
. +++ ||..+ ++....+...- ....|+.+.+-+|+++|+.-= ....++|+.+.
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 1 444 55554 33344433211 357899999999999877422 23456666544
No 441
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.95 E-value=23 Score=39.06 Aligned_cols=194 Identities=13% Similarity=0.158 Sum_probs=104.4
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEe--ecccCCccE--E-EEEcCC---CeEEEEEcCCCCceee-ecC
Q 001336 442 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC--PHHKENIQF--I-FSTATD---GKIKAWLYDNLGSRVD-YDA 512 (1097)
Q Consensus 442 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~~--l-~s~~~d---g~i~iwd~~~~~~~~~-~~~ 512 (1097)
+++....++-+.+||+ .|+.++.+. .++.+.+. ....-+|+. | ++...+ .+|++|.++....... +..
T Consensus 70 lIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 6788888899999996 666666664 23333332 211112222 3 333332 5799998874333222 211
Q ss_pred -------CCCceEEEEE--cc-CCCEEEEeeeCCCCCceEEEEeC---CCC----eeeEEecCCCCcceEEEEEcCCCCE
Q 001336 513 -------PGHSSTMMAY--SA-DGARLFSCGTNKEGESYLVEWNE---SEG----AVKRTYHGLGKRSVGVVQFDTTKNR 575 (1097)
Q Consensus 513 -------~~~~v~~~~~--s~-~~~~l~~~~~~~~~~~~i~~wd~---~~~----~~~~~~~~~~~~~v~~~~~~~~~~~ 575 (1097)
....++.+|+ ++ +|.+.+.... + ++.+..|.+ ..+ ++++.|.... .+..|........
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k--~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~ 221 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-K--DGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGR 221 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-T--TSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTE
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec-C--CceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCC
Confidence 1124667776 33 4665555443 2 234555544 333 5678887654 5788888888899
Q ss_pred EEEEeCCCcEEEEECCC-----CceEEEEecCCCCCCcceEEEcC--CC--CEEEEEECCCcEEEEEcCCCceEEEE
Q 001336 576 FLAAGDEFMIKFWDMDN-----VNLLASIDADGGLQASPCIRFNK--EG--ILLAVSTNDNGIKILANADGIRLLRT 643 (1097)
Q Consensus 576 l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s~--~~--~~l~s~~~dg~i~iw~~~~~~~~~~~ 643 (1097)
|+.+-++.-|.-|+.+. ++.+....+......|-.+++-. ++ .+|++.-.+++..+|+..........
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~ 298 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGS 298 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEE
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccce
Confidence 99999998888888762 22333333322344566676643 33 34444445778999998764343333
No 442
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.79 E-value=7.5 Score=47.13 Aligned_cols=76 Identities=11% Similarity=0.101 Sum_probs=54.9
Q ss_pred cCCeEEEEcCCCcEEEEEeCCeEEEEeCCC----------cce--ee-ee------eccCCCCCEEEEEEecC---CCEE
Q 001336 941 LADTRVQFHLDQTHLLAVHETQIAIYEAPK----------LEC--LK-QF------VPREASGPITHATYSCD---SQSI 998 (1097)
Q Consensus 941 ~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~----------~~~--~~-~~------~~~~h~~~v~~v~~s~d---g~~l 998 (1097)
..|..+.++++|.+|+......|.|-.+.. |+. .. .+ ....+...|..+.|.|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 458899999999999997667777766642 111 10 11 11234678999999886 5789
Q ss_pred EEEecCCeEEEEeCCCCc
Q 001336 999 YVAFEEGSVGVLTASTLR 1016 (1097)
Q Consensus 999 ~s~s~Dg~v~vwd~~~~~ 1016 (1097)
+.-..|+++|+||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 999999999999997644
No 443
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.71 E-value=21 Score=38.19 Aligned_cols=171 Identities=11% Similarity=0.062 Sum_probs=95.3
Q ss_pred eEEEEEcCCCceeEEeCCC------CCCeEEEEEeCCCC----CEEEEEE-CCCcEEEEEcccceEEEEecccc------
Q 001336 828 KISLFNMMTFKTMTTFMPP------PPAATFLAFHPQDN----NIIAIGM-EDSSIQIYNVRVDEVKTKLKGHQ------ 890 (1097)
Q Consensus 828 ~i~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~~~----~~la~g~-~dg~v~vwd~~~~~~~~~l~~h~------ 890 (1097)
+|.+||+.+.+.++++.-+ .+.+..+.+...++ .++.... ..+.|.|+|+.+++.-+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 5888999999988876432 34577788875222 2444433 33589999999987655544321
Q ss_pred -------------cCeEEEEEec---CCCEEEEEeCCCcEEEEEcCCCcccce-----e----eEeecCCCCCCccCCeE
Q 001336 891 -------------KRITGLAFSN---TLNVLVSSGADSQLCVWSTDGWEKQAS-----K----FLTIPNGRTASALADTR 945 (1097)
Q Consensus 891 -------------~~V~~l~~s~---dg~~l~s~~~Dg~i~iwd~~~~~~~~~-----~----~~~~~~~~~~~~~~v~~ 945 (1097)
+.+.+++.+| ++++|.-....+ -++|.+.+.-.... . .++.. +... .....
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g 190 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKG--SQSDG 190 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----SECE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cccC--CCCce
Confidence 2356666655 666777665544 34454443211110 0 01110 1100 23567
Q ss_pred EEEcCCCcEEEE-EeCCeEEEEeCCCcc---eeeeeeccCC-CCCEEEEEEec--CCCEEEEEe
Q 001336 946 VQFHLDQTHLLA-VHETQIAIYEAPKLE---CLKQFVPREA-SGPITHATYSC--DSQSIYVAF 1002 (1097)
Q Consensus 946 l~~s~dg~~l~~-~~d~~v~vwd~~~~~---~~~~~~~~~h-~~~v~~v~~s~--dg~~l~s~s 1002 (1097)
++++++|.+.++ ...+.|..|+..+.- ....+..... -..+.++.+.+ +|.+.+.+.
T Consensus 191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 899999998887 478999999998621 2222221122 35778899988 777766554
No 444
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.70 E-value=27 Score=39.30 Aligned_cols=152 Identities=9% Similarity=0.071 Sum_probs=86.2
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEcccceE--EEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccce
Q 001336 850 ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV--KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQAS 927 (1097)
Q Consensus 850 i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~ 927 (1097)
...+..++ ++.+++++.....++-||- |+. ...-..-...++++.|.+++..++.+ .+|.+ +|....++....
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence 34456667 7777777654433333442 221 11112234568999999999877655 56654 444444431110
Q ss_pred -eeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeeeee-ccCCCCCEEEEEEecCCCEEEEEecCC
Q 001336 928 -KFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFV-PREASGPITHATYSCDSQSIYVAFEEG 1005 (1097)
Q Consensus 928 -~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~-~~~h~~~v~~v~~s~dg~~l~s~s~Dg 1005 (1097)
.......... ...+..+.|.+++..++++..|.+.... +.|+.-.... ...-......+.|.++++.+++| .+|
T Consensus 316 ~~f~~~~~~~~--~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G 391 (398)
T PLN00033 316 FDFEEADIKSR--GFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDG 391 (398)
T ss_pred cceeecccCCC--CcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCc
Confidence 1111111100 1347889999999999889888777654 3344322222 11224678899998887777754 578
Q ss_pred eEEEE
Q 001336 1006 SVGVL 1010 (1097)
Q Consensus 1006 ~v~vw 1010 (1097)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 77655
No 445
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.30 E-value=1.7 Score=47.18 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=82.4
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
..++|.++.||+|.+ ++|+--.|++|.+.+....+....... ..+..+..|....|+.+ .-+|
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~---------------~ck~k~~~IlGF~W~~s-~e~A 127 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQ---------------ECKTKNANILGFCWTSS-TEIA 127 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHH---------------HhccCcceeEEEEEecC-eeEE
Confidence 567999999999999 679999999999999854432211100 02234556999999876 6777
Q ss_pred EEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001336 398 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 461 (1097)
Q Consensus 398 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~ 461 (1097)
.....| +-+|.+...+ +.....+.|...|..-.|+++..-.+|+|+-..+++.=+-++++.
T Consensus 128 ~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 128 FITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred EEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 777777 6777665432 222235678889999999999885333444344555444444443
No 446
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.26 E-value=8.5 Score=45.02 Aligned_cols=177 Identities=7% Similarity=0.096 Sum_probs=94.0
Q ss_pred CCCeeEEEEccCCCEEEEEeCCeEEEEEcCCCceeEEe----CCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccce
Q 001336 806 EDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTF----MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE 881 (1097)
Q Consensus 806 ~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~----~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~ 881 (1097)
...+-.+.|+.+..+|+..-+|++.+|++-. +.+... ......|..+.|.. +| +++-..+|.+.+-+-....
T Consensus 83 ~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~-~G--Vavlt~~g~v~~i~~~~~~ 158 (829)
T KOG2280|consen 83 HGELIGMGWSDDEELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFH-NG--VAVLTVSGQVILINGVEEP 158 (829)
T ss_pred CCCeeeecccCCceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEec-Cc--eEEEecCCcEEEEcCCCcc
Confidence 3478899999999999888899999999843 322221 22233455555554 44 3334445655554322222
Q ss_pred EEEEecc---cccCeEEEEEecCCC-EEEEEeCCCc--EEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEE
Q 001336 882 VKTKLKG---HQKRITGLAFSNTLN-VLVSSGADSQ--LCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHL 955 (1097)
Q Consensus 882 ~~~~l~~---h~~~V~~l~~s~dg~-~l~s~~~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 955 (1097)
.+.++.. ..-+-++-+.-+++. .......|-. ..+.-.+... .........+ ..+..+..||.+++|
T Consensus 159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~---~q~~~~~~~~----~~~~ki~VS~n~~~l 231 (829)
T KOG2280|consen 159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESR---VQLHALSWPN----SSVVKISVSPNRRFL 231 (829)
T ss_pred hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccc---ccccccCCCC----ceEEEEEEcCCcceE
Confidence 2233322 111112222222221 1111111110 1112222211 1112222222 357889999999999
Q ss_pred EE-EeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecC
Q 001336 956 LA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCD 994 (1097)
Q Consensus 956 ~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~d 994 (1097)
+. ...|.|.+-+.+..++...+.+..|..+- .++|..+
T Consensus 232 aLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~-qm~Wcgn 270 (829)
T KOG2280|consen 232 ALYTETGKIWVVSIDLSQILCEFNCTDHDPPK-QMAWCGN 270 (829)
T ss_pred EEEecCCcEEEEecchhhhhhccCCCCCCchH-hceeecC
Confidence 98 78899999999988888887765553332 6666443
No 447
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.21 E-value=6.3 Score=44.19 Aligned_cols=149 Identities=11% Similarity=0.031 Sum_probs=80.0
Q ss_pred CCeEEEEEeCCCCCEEEEEE-----------CCC-cEEEEEccc--ce--EEEEecccccCeEEEEEecCCCEEEEEeCC
Q 001336 848 PAATFLAFHPQDNNIIAIGM-----------EDS-SIQIYNVRV--DE--VKTKLKGHQKRITGLAFSNTLNVLVSSGAD 911 (1097)
Q Consensus 848 ~~i~~l~~sp~~~~~la~g~-----------~dg-~v~vwd~~~--~~--~~~~l~~h~~~V~~l~~s~dg~~l~s~~~D 911 (1097)
.....|+|.+ +|+++++-. ..+ .|.+++-.+ |+ ....+.........+++.++| +++ +..+
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 4567888988 777766642 223 677776432 32 223333333456889999998 444 4444
Q ss_pred CcEEEEEcCCCc-cc-c-eeeEeecCCC-CCCccCCeEEEEcCCCcEEEE-EeC-------------------CeEEEEe
Q 001336 912 SQLCVWSTDGWE-KQ-A-SKFLTIPNGR-TASALADTRVQFHLDQTHLLA-VHE-------------------TQIAIYE 967 (1097)
Q Consensus 912 g~i~iwd~~~~~-~~-~-~~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~~-~~d-------------------~~v~vwd 967 (1097)
...++.+..... .. . ...+...... .........++|.|||.+.++ +.. +.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 433333443311 11 1 1122212111 001134678999999987665 311 3455555
Q ss_pred CCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEe
Q 001336 968 APKLECLKQFVPREASGPITHATYSCDSQSIYVAF 1002 (1097)
Q Consensus 968 ~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s 1002 (1097)
.++++. ..+. .+ -.....++|+++|+++++-.
T Consensus 171 pdg~~~-e~~a-~G-~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKL-RVVA-HG-FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeE-EEEe-cC-cCCCccceECCCCCEEEEcc
Confidence 554442 2222 23 34567899999999887644
No 448
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.20 E-value=22 Score=37.33 Aligned_cols=209 Identities=9% Similarity=0.090 Sum_probs=121.6
Q ss_pred eeEEEEccCCCEEEEEe-CCeEEEEEcC------CC-ceeEEeCC-----CCCCeEEEEEeCCCCC------------EE
Q 001336 809 VPCFALSKNDSYVMSAS-GGKISLFNMM------TF-KTMTTFMP-----PPPAATFLAFHPQDNN------------II 863 (1097)
Q Consensus 809 v~~l~~s~dg~~la~~s-dg~i~iwd~~------~~-~~~~~~~~-----~~~~i~~l~~sp~~~~------------~l 863 (1097)
-+.|+++|.+.+-++.. -+...+||.. .. .++-++.. .....+.+.|.. ... .+
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccceeE
Confidence 47899999987777665 6889999986 12 22333332 124577788874 222 25
Q ss_pred EEEECCCcEEEEEcccceE-----EEEec-ccccCe-EEEEEecC--CCEEE-EEeCCCcEEEEEcCCCcccceeeE---
Q 001336 864 AIGMEDSSIQIYNVRVDEV-----KTKLK-GHQKRI-TGLAFSNT--LNVLV-SSGADSQLCVWSTDGWEKQASKFL--- 930 (1097)
Q Consensus 864 a~g~~dg~v~vwd~~~~~~-----~~~l~-~h~~~V-~~l~~s~d--g~~l~-s~~~Dg~i~iwd~~~~~~~~~~~~--- 930 (1097)
+.+++||+|.=|...-+.. ...+. .-.+.| ..+++... +.+|. +--..++|.++|-.-.+....-..
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 6778999999998532211 12222 112333 35666533 44444 445678899997544221000000
Q ss_pred eecCCCCCCccCCeEEEEcCCCcEEEE-E-------------eCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEec---
Q 001336 931 TIPNGRTASALADTRVQFHLDQTHLLA-V-------------HETQIAIYEAPKLECLKQFVPREASGPITHATYSC--- 993 (1097)
Q Consensus 931 ~~~~~~~~~~~~v~~l~~s~dg~~l~~-~-------------~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~--- 993 (1097)
.++.+..+ -.|..+ .+++.++ + .-|.|-+||.. |..++.+...+.=..-+.++..|
T Consensus 184 ~iPagyAP--FnIqni----g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~F 256 (336)
T TIGR03118 184 ALPAGYAP--FNVQNL----GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESF 256 (336)
T ss_pred CCCCCCCC--cceEEE----CCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhh
Confidence 01111111 111111 1222222 2 22568899987 77777776555556667788755
Q ss_pred ---CCCEEEEEecCCeEEEEeCCCCceeeeeCCCC
Q 001336 994 ---DSQSIYVAFEEGSVGVLTASTLRLRCRINPTA 1025 (1097)
Q Consensus 994 ---dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~ 1025 (1097)
.|.+|+----||+|-+||..+++.+-.+....
T Consensus 257 G~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~ 291 (336)
T TIGR03118 257 GSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPD 291 (336)
T ss_pred CCCCCCeEEeecCCceeEEecCCCCceeeeecCCC
Confidence 66778866679999999999999887777443
No 449
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.08 E-value=0.71 Score=32.26 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=27.2
Q ss_pred CCeeEEEEccCCC--eEEEEEeCCCeEEEEEcCCC
Q 001336 320 SAVKSMDFHPVQQ--ILLVVGTNMGDVMLWEVGSR 352 (1097)
Q Consensus 320 ~~V~~v~fspdg~--~lla~gs~dg~i~iwd~~~~ 352 (1097)
+.|.+++|||+.. .||+..-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999998654 67888888899999999853
No 450
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=90.83 E-value=23 Score=41.72 Aligned_cols=102 Identities=11% Similarity=0.219 Sum_probs=58.9
Q ss_pred eEEEEEccCCceeeeeccCc-----EEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEcc
Q 001336 742 VSRLIYTNSGLAILALASNA-----VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK 816 (1097)
Q Consensus 742 i~~l~~spdg~~l~~~~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 816 (1097)
-..+.|-|.|..+++.+.|| .++++.-+ | +..|..-.. . +-...+..++|+-
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErN-------G------------LrHGef~lr-~---~~dEk~~~~~wn~ 305 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERN-------G------------LRHGEFDLR-V---GCDEKAFLENWNL 305 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccC-------C------------cccCCcccc-C---CchhhhhhhhhhH
Confidence 34588999999999887654 23333211 0 111111000 0 1234455667777
Q ss_pred CCCEEEEEeCCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEE
Q 001336 817 NDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIG 866 (1097)
Q Consensus 817 dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g 866 (1097)
....++.+..+.+++|-..+..-.....-.-..+.-+.|+|.....|...
T Consensus 306 ~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~ 355 (1243)
T COG5290 306 LSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFR 355 (1243)
T ss_pred HHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEEEe
Confidence 77777777788999998876543333333445678889999444444443
No 451
>PHA02790 Kelch-like protein; Provisional
Probab=90.74 E-value=10 Score=44.30 Aligned_cols=185 Identities=9% Similarity=-0.044 Sum_probs=85.9
Q ss_pred EEEEEeCCC-----cEEEEECCCCceeEE--eecCCcCeEEEeecccCCccEEEEEcCC--CeEEEEEcCCCCceeeecC
Q 001336 442 SVVTCGEDR-----VIKVWDAVTGTKQYI--FEGHESPVYSICPHHKENIQFIFSTATD--GKIKAWLYDNLGSRVDYDA 512 (1097)
Q Consensus 442 ~l~s~s~d~-----~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~ 512 (1097)
+++.||.++ .+..||..+++.... +....... +++. -++.+.+.||.+ ..+..||..+..-...-..
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v~---~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGVP---ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEEE---ECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 556666542 566788877654332 11111111 1221 234566777654 3567777654322111111
Q ss_pred CCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001336 513 PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 592 (1097)
Q Consensus 513 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 592 (1097)
...........-+|+..+.||.++. ...+..||..+.+-...-.-... .....+..-++...+.| |.+.+||..+
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~~m~~~-r~~~~~~~~~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGPSTYYP-HYKSCALVFGRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCCCCCCc-cccceEEEECCEEEEEC---CceEEecCCC
Confidence 1111111222346777777775432 34577899876643322111111 11111222345555555 3567888877
Q ss_pred CceEEEEecCCCCCCcceEEEcCCCCEEEEEECC-----CcEEEEEcCCC
Q 001336 593 VNLLASIDADGGLQASPCIRFNKEGILLAVSTND-----NGIKILANADG 637 (1097)
Q Consensus 593 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d-----g~i~iw~~~~~ 637 (1097)
++-...-...........+. -+++..+.||.+ ..+..||..++
T Consensus 425 ~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 425 NTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 65433222211111122222 256777777754 34667776655
No 452
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.71 E-value=2.4 Score=51.48 Aligned_cols=146 Identities=12% Similarity=0.022 Sum_probs=87.4
Q ss_pred cEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee-----EEeecC------CcCeEEEeecccCCccEEEEEcCCCeE
Q 001336 428 SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ-----YIFEGH------ESPVYSICPHHKENIQFIFSTATDGKI 496 (1097)
Q Consensus 428 ~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~-----~~~~~h------~~~v~~~~~~~~~~~~~l~s~~~dg~i 496 (1097)
++..+...+|+....++..+.+-.|..+|+++-..- .-|..| .....++.|.+... ...+....|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 566666777877545555566668999998753211 111111 22344556655543 234566778888
Q ss_pred EEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCC---CCcceEEEEEcCCC
Q 001336 497 KAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL---GKRSVGVVQFDTTK 573 (1097)
Q Consensus 497 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~---~~~~v~~~~~~~~~ 573 (1097)
++..+........-..-....++++|+|.|+.++++-. .+++.-|... .+..+.+.+. ....|.+++|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n----nGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN----NGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC----CCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 88866544333333233457899999999999999854 3456666543 3333333332 23468888887776
Q ss_pred CEEEEE
Q 001336 574 NRFLAA 579 (1097)
Q Consensus 574 ~~l~~~ 579 (1097)
.+++.-
T Consensus 256 eflvvy 261 (1405)
T KOG3630|consen 256 EFLVVY 261 (1405)
T ss_pred eEEEEe
Confidence 666653
No 453
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.68 E-value=6.2 Score=43.66 Aligned_cols=152 Identities=11% Similarity=0.095 Sum_probs=91.7
Q ss_pred EEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccC------CccEEEEEcCCCeEEEEEcC
Q 001336 429 VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE------NIQFIFSTATDGKIKAWLYD 502 (1097)
Q Consensus 429 V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~~~dg~i~iwd~~ 502 (1097)
+.-+-.+.+...+++..|+....++-.|++.|+.+.++.-|...| +.|.|.. +.+.|+ |-.+..|.-.|.+
T Consensus 469 p~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR 545 (776)
T COG5167 469 PEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPR 545 (776)
T ss_pred hhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEeccc
Confidence 333444444555466677888899999999999999998887764 4443322 123444 4444555545555
Q ss_pred CCCceeeecCCCC-----ceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEE
Q 001336 503 NLGSRVDYDAPGH-----SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFL 577 (1097)
Q Consensus 503 ~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 577 (1097)
..+.......... ...+..- ...-++++++..|+ |++||--.-+....+++... .|..+..+.+|.+++
T Consensus 546 ~~gNKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~kGD----irLyDRig~rAKtalP~lG~-aIk~idvta~Gk~il 619 (776)
T COG5167 546 ARGNKIKVVESKDYKTKNKFSSGMT-TESGYIAAASRKGD----IRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHIL 619 (776)
T ss_pred ccCCceeeeeehhcccccccccccc-ccCceEEEecCCCc----eeeehhhcchhhhcCccccc-ceeeeEeecCCcEEE
Confidence 4432222211111 2223322 23457888876544 99999655454455565555 788899999999988
Q ss_pred EEeCCCcEEEEEC
Q 001336 578 AAGDEFMIKFWDM 590 (1097)
Q Consensus 578 ~~~~dg~i~iwd~ 590 (1097)
+.+. ..+.+-|+
T Consensus 620 aTCk-~yllL~d~ 631 (776)
T COG5167 620 ATCK-NYLLLTDV 631 (776)
T ss_pred Eeec-ceEEEEec
Confidence 8875 34555554
No 454
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=90.63 E-value=24 Score=40.15 Aligned_cols=275 Identities=16% Similarity=0.101 Sum_probs=135.9
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
....|.++.|.-.|.+ -+|+.|| +..||..+++.+.... .....+|..+.-+-.|+ |.
T Consensus 163 ~d~~V~aLv~D~~g~l--WvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg~-LW 220 (671)
T COG3292 163 KDTPVVALVFDANGRL--WVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQGR-LW 220 (671)
T ss_pred cCccceeeeeeccCcE--EEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcCc-EE
Confidence 5678999999999983 5677777 6677777776654210 11124555555555554 66
Q ss_pred EEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE-EeecCC--cCeE
Q 001336 398 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY-IFEGHE--SPVY 474 (1097)
Q Consensus 398 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~h~--~~v~ 474 (1097)
+|+.+| |.+.+.++.+... .. ..-..+.|..+.=..+|. +-.|+..|-.+. ....+.... ..+.|. ..|.
T Consensus 221 VGTdqG-v~~~e~~G~~~sn-~~-~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vn 293 (671)
T COG3292 221 VGTDQG-VYLQEAEGWRASN-WG-PMLPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVN 293 (671)
T ss_pred EEeccc-eEEEchhhccccc-cC-CCCcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCcccccc
Confidence 677777 6777766532111 00 111233455444444444 556666554433 223332222 222222 2344
Q ss_pred EEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEcc--CCCEEEEeeeCCCCCceEEEEeCCCCee
Q 001336 475 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA--DGARLFSCGTNKEGESYLVEWNESEGAV 552 (1097)
Q Consensus 475 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 552 (1097)
++. -+.+| -|-+++.++.+++=+-+-..........+..+...+.+| .+..+-... ..+.+.+-+..++..
T Consensus 294 sL~--~D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG~~ 366 (671)
T COG3292 294 SLW--LDTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTGEL 366 (671)
T ss_pred cee--eccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCCcE
Confidence 443 35554 355666666655433221111111111111222222222 111111110 111344555556666
Q ss_pred eEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEE
Q 001336 553 KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI 631 (1097)
Q Consensus 553 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~i 631 (1097)
++....-....|+.+++..+ ..+-.++...-+..|+..+ +.......+ -..+.|..+--.|+++ |..|+.+|.++.
T Consensus 367 v~sv~q~Rg~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~~avlde~ag-l~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 367 VRSVHQLRGMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNEWAVLDEDAG-LPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred EEEeeeccccccchhhhccC-CcEEEEecccchhhhccCCcccccccccC-CcccceeeeeecCCCC-EEEeccCCeEec
Confidence 66655444446777777764 4555666554455566655 333333332 2245677777788877 667888876554
No 455
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.55 E-value=31 Score=38.04 Aligned_cols=203 Identities=13% Similarity=0.152 Sum_probs=109.2
Q ss_pred cCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCE--EEEEe-
Q 001336 749 NSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY--VMSAS- 825 (1097)
Q Consensus 749 pdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~--la~~s- 825 (1097)
|...+++....++-+.+||+... .+.. +..|++-.. .-...+.+ +|+. |+.++
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk-------~lq~-------~~~Gr~NNV--------Dvrygf~l--~g~~vDlavas~ 121 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGK-------ELQS-------LPVGRPNNV--------DVRYGFPL--NGKTVDLAVASD 121 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--------EEEE-------E-SS-EEEE--------EEEEEEEE--TTEEEEEEEEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCc-------EEEe-------ecCCCccee--------eeecceec--CCceEEEEEEec
Confidence 45566777777888999987632 2111 111111110 11122222 3443 45554
Q ss_pred -C---CeEEEEEcC--CCceeEEeCC-------CCCCeEEEEE--eCCCCC-EEEEEECCCcEEEEEccc---c----eE
Q 001336 826 -G---GKISLFNMM--TFKTMTTFMP-------PPPAATFLAF--HPQDNN-IIAIGMEDSSIQIYNVRV---D----EV 882 (1097)
Q Consensus 826 -d---g~i~iwd~~--~~~~~~~~~~-------~~~~i~~l~~--sp~~~~-~la~g~~dg~v~vwd~~~---~----~~ 882 (1097)
+ ++|++|.+. ++. +..+.. ....+..+|+ ++.+++ ++++...+|.+..|.+.. + +.
T Consensus 122 R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~l 200 (381)
T PF02333_consen 122 RSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATL 200 (381)
T ss_dssp -CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEE
T ss_pred CcCCCCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEE
Confidence 2 469999875 333 333321 1123555665 443444 566677899999888852 2 56
Q ss_pred EEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEc--CCC-cEEEEE-
Q 001336 883 KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFH--LDQ-THLLAV- 958 (1097)
Q Consensus 883 ~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s--~dg-~~l~~~- 958 (1097)
++++..- +.+-.|........|+.+-+|.-|.-|+.+.........+....+. .....+..+++- .++ .||+++
T Consensus 201 VR~f~~~-sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~-~l~aDvEGlaly~~~~g~gYLivSs 278 (381)
T PF02333_consen 201 VREFKVG-SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGD-GLVADVEGLALYYGSDGKGYLIVSS 278 (381)
T ss_dssp EEEEE-S-S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSS-SB-S-EEEEEEEE-CCC-EEEEEEE
T ss_pred EEEecCC-CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeeccccc-ccccCccceEEEecCCCCeEEEEEc
Confidence 7777653 4688999988888999999998888887764332222333222221 112456677764 343 477775
Q ss_pred -eCCeEEEEeCCC-cceeeeee
Q 001336 959 -HETQIAIYEAPK-LECLKQFV 978 (1097)
Q Consensus 959 -~d~~v~vwd~~~-~~~~~~~~ 978 (1097)
.+++..||+.+. ...+..|.
T Consensus 279 QG~~sf~Vy~r~~~~~~~g~f~ 300 (381)
T PF02333_consen 279 QGDNSFAVYDREGPNAYVGSFR 300 (381)
T ss_dssp GGGTEEEEEESSTT--EEEEEE
T ss_pred CCCCeEEEEecCCCCcccceEE
Confidence 567899999874 34444443
No 456
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=90.19 E-value=18 Score=42.02 Aligned_cols=148 Identities=16% Similarity=0.085 Sum_probs=77.1
Q ss_pred CCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEE
Q 001336 868 EDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQ 947 (1097)
Q Consensus 868 ~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 947 (1097)
..+...++|. .|.+...+.........+...++|.+++..+ ..+..+|+.... . .....+.+.. .--..+.
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v-~--~~~~l~~~~~---~~HHD~~ 196 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKV-I--WEYDLPGGYY---DFHHDID 196 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--E-E--EEEE--TTEE----B-S-EE
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCE-E--EeeecCCccc---ccccccE
Confidence 3445555553 3454444432222111166678998887665 678888876532 1 1122222110 0123477
Q ss_pred EcCCCcEEEEEe--------------CCeEEEEeCCCcceeeeeeccCCC-------------------------CCEEE
Q 001336 948 FHLDQTHLLAVH--------------ETQIAIYEAPKLECLKQFVPREAS-------------------------GPITH 988 (1097)
Q Consensus 948 ~s~dg~~l~~~~--------------d~~v~vwd~~~~~~~~~~~~~~h~-------------------------~~v~~ 988 (1097)
.-|+|++|+.+. +..|..+| .+|+.+..|....|- --+.+
T Consensus 197 ~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns 275 (477)
T PF05935_consen 197 ELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINS 275 (477)
T ss_dssp E-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEE
T ss_pred ECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCc
Confidence 889999988754 33467777 788877776643331 24788
Q ss_pred EEEec-CCCEEEEEecCCeEEEEeCCCCceeeeeCCCC
Q 001336 989 ATYSC-DSQSIYVAFEEGSVGVLTASTLRLRCRINPTA 1025 (1097)
Q Consensus 989 v~~s~-dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~ 1025 (1097)
+.+.+ |+.+|+++-.-..|...|..+++....+....
T Consensus 276 i~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 276 IDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp EEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred cEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 99988 66666666656789999999999988888554
No 457
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.19 E-value=0.33 Score=56.73 Aligned_cols=198 Identities=12% Similarity=0.151 Sum_probs=107.9
Q ss_pred CCCCeeEEEEccCC-CEEEEEe-CCeEEEEEcC--CCcee-----EEeCCCCCCeEEEEEeCC--CCCEEEEEECCCcEE
Q 001336 805 PEDAVPCFALSKND-SYVMSAS-GGKISLFNMM--TFKTM-----TTFMPPPPAATFLAFHPQ--DNNIIAIGMEDSSIQ 873 (1097)
Q Consensus 805 h~~~v~~l~~s~dg-~~la~~s-dg~i~iwd~~--~~~~~-----~~~~~~~~~i~~l~~sp~--~~~~la~g~~dg~v~ 873 (1097)
..+.+..++|-+-. ..++ . -|.+.||+++ .|+.. .........+.-+.|.|- +.-++..+..++.|+
T Consensus 131 f~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~ 208 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIR 208 (1283)
T ss_pred CCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCcee
Confidence 55666666664311 1111 2 2678888874 23322 122222233444444431 456777888889999
Q ss_pred EEEcccceEEEEecccccCeEEEE-----------EecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccC
Q 001336 874 IYNVRVDEVKTKLKGHQKRITGLA-----------FSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALA 942 (1097)
Q Consensus 874 vwd~~~~~~~~~l~~h~~~V~~l~-----------~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1097)
+.+.++... ..+++|...++.++ .||||+.+|+++.||.+++|.+.-......+++..-+.|.. .+
T Consensus 209 lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p 285 (1283)
T KOG1916|consen 209 LLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HP 285 (1283)
T ss_pred EeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CC
Confidence 887765432 34556776665544 58999999999999999999876433233333333333332 22
Q ss_pred CeEEEEcCC-------Cc--EEEEE--eCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCE------------EE
Q 001336 943 DTRVQFHLD-------QT--HLLAV--HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQS------------IY 999 (1097)
Q Consensus 943 v~~l~~s~d-------g~--~l~~~--~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~------------l~ 999 (1097)
-.|.-|... +. +++++ .+..+++|.....+|+..+. ...|..+. -+||.. ++
T Consensus 286 ~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~----~d~v~iV~-p~~~~v~~~~~~~~~~~~~v 360 (1283)
T KOG1916|consen 286 RVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL----IDGVQIVG-PHDGEVTDLSMCQWMTTRLV 360 (1283)
T ss_pred ceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc----ccceEeec-CCCccccchhhhHHHHHHHH
Confidence 233334332 22 23333 34678899888777763332 12333333 333322 33
Q ss_pred EEecCCeEEEEeC
Q 001336 1000 VAFEEGSVGVLTA 1012 (1097)
Q Consensus 1000 s~s~Dg~v~vwd~ 1012 (1097)
+-+-|++|.+|.=
T Consensus 361 ~r~v~~~i~~~qn 373 (1283)
T KOG1916|consen 361 SRSVDGTIKIWQN 373 (1283)
T ss_pred HhhhHHHHHHhhc
Confidence 4556788888853
No 458
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.86 E-value=20 Score=39.41 Aligned_cols=157 Identities=10% Similarity=0.038 Sum_probs=92.8
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEcccc--eEEEEe-cccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccc
Q 001336 850 ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD--EVKTKL-KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQA 926 (1097)
Q Consensus 850 i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~--~~~~~l-~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~ 926 (1097)
-+.+-|.. .+....+...|.+.=|-+..- ...-.+ ....++|.++.||+|.+.||.--.|.+|.+.+....+...
T Consensus 25 sngvFfDD--aNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 25 SNGVFFDD--ANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ccceeecc--CcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 35566653 333333334455555554321 122222 2345799999999999999999999999999986544222
Q ss_pred eeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcce-eeeeeccCCCCCEEEEEEecCCCEEEEEe--c
Q 001336 927 SKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLEC-LKQFVPREASGPITHATYSCDSQSIYVAF--E 1003 (1097)
Q Consensus 927 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~-~~~~~~~~h~~~v~~v~~s~dg~~l~s~s--~ 1003 (1097)
........+ ...|....|+.. .-+|.-.+..+.+|-....+. ++... .|...|.-..|.++.+.++-++ .
T Consensus 103 ~~~~~ck~k----~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVk--s~~~nvnWy~yc~et~v~LL~t~~~ 175 (657)
T KOG2377|consen 103 EYTQECKTK----NANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVK--SHNLNVNWYMYCPETAVILLSTTVL 175 (657)
T ss_pred HHHHHhccC----cceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhh--hcccCccEEEEccccceEeeecccc
Confidence 111111111 134788899887 445655666777777654332 22222 5778899999999988744333 3
Q ss_pred CCeEEEEeCCCC
Q 001336 1004 EGSVGVLTASTL 1015 (1097)
Q Consensus 1004 Dg~v~vwd~~~~ 1015 (1097)
.+++-=+.+.++
T Consensus 176 ~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 176 ENVLNPFHFRAG 187 (657)
T ss_pred ccccccEEEeec
Confidence 444444444443
No 459
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.79 E-value=39 Score=38.02 Aligned_cols=14 Identities=21% Similarity=0.128 Sum_probs=9.2
Q ss_pred cEEEEECCCCceeE
Q 001336 451 VIKVWDAVTGTKQY 464 (1097)
Q Consensus 451 ~i~iwd~~~~~~~~ 464 (1097)
.+..||..+.+...
T Consensus 107 ~v~~YD~~~n~W~~ 120 (376)
T PRK14131 107 DVYKYDPKTNSWQK 120 (376)
T ss_pred cEEEEeCCCCEEEe
Confidence 47788887765433
No 460
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.76 E-value=1.1 Score=31.29 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=27.1
Q ss_pred CCeEEEEEccC-C--CEEEEEECCCEEEEEEccCC
Q 001336 382 ASVNRVMWSPD-G--TLFGVAYSKHIVHLYTYHGG 413 (1097)
Q Consensus 382 ~~V~~v~~spd-~--~~las~~~dg~i~iwd~~~~ 413 (1097)
++|.+++|||+ + .+|+.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 47899999984 4 58999999999999999853
No 461
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.41 E-value=19 Score=43.04 Aligned_cols=118 Identities=8% Similarity=0.051 Sum_probs=77.3
Q ss_pred CCeEEEEEcc--CCCEEEEEECCCEEEEEEccC-------C----e------eeeeeeeeecccCcEEEEEEe--cCCCc
Q 001336 382 ASVNRVMWSP--DGTLFGVAYSKHIVHLYTYHG-------G----D------ELRNHLEIEAHVGSVNDLAFS--YPNKQ 440 (1097)
Q Consensus 382 ~~V~~v~~sp--d~~~las~~~dg~i~iwd~~~-------~----~------~~~~~~~l~~h~~~V~~l~~s--~d~~~ 440 (1097)
..|+.+.... +...|+.|..||.|.+|.+++ . + .+++...+. -...++.++++ ...+
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r- 178 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR- 178 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce-
Confidence 3577776655 667899999999999997632 0 0 011222222 34478999998 5555
Q ss_pred EEEEEEeCCCcEEEEECCCC--ceeE-EeecCCcCeEEEeecccCC---cc-EEEEEcCCCeEEEEEcC
Q 001336 441 LSVVTCGEDRVIKVWDAVTG--TKQY-IFEGHESPVYSICPHHKEN---IQ-FIFSTATDGKIKAWLYD 502 (1097)
Q Consensus 441 ~~l~s~s~d~~i~iwd~~~~--~~~~-~~~~h~~~v~~~~~~~~~~---~~-~l~s~~~dg~i~iwd~~ 502 (1097)
+||.++....|.||-.... +... .-..|...|.+++|..+.. |. .+++++-.|.+.+|++.
T Consensus 179 -lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 179 -LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred -EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 7888888888887755432 2111 1113667789999876652 22 78888999999998873
No 462
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=89.36 E-value=29 Score=35.98 Aligned_cols=187 Identities=14% Similarity=0.116 Sum_probs=0.0
Q ss_pred CCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccc---eEEEEecccccCe
Q 001336 818 DSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD---EVKTKLKGHQKRI 893 (1097)
Q Consensus 818 g~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~---~~~~~l~~h~~~V 893 (1097)
+++...+. +.-++|.|+.+......+..-+-.-..-.+.- .|++..++..|.-+.+.|+.+. ++..++......-
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v-sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~ 174 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV-SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDT 174 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe-cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCc
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcce
Q 001336 894 TGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLEC 973 (1097)
Q Consensus 894 ~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~ 973 (1097)
..++.| |++-..+..|+.+.+-|+.. ..-.+..++......+..+..|++..+++.. +..+.+-|..+.+.
T Consensus 175 ~~v~IS--Gn~AYvA~~d~GL~ivDVSn------p~sPvli~~~n~g~g~~sv~vsdnr~y~vvy-~egvlivd~s~~ss 245 (370)
T COG5276 175 HDVAIS--GNYAYVAWRDGGLTIVDVSN------PHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY-DEGVLIVDVSGPSS 245 (370)
T ss_pred eeEEEe--cCeEEEEEeCCCeEEEEccC------CCCCeEEEEEecCCceEEEEecCCeeEEEEc-ccceEEEecCCCCC
Q ss_pred eeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCC
Q 001336 974 LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1014 (1097)
Q Consensus 974 ~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~ 1014 (1097)
...+-.-....++.--.+.--|++...+..++-+.+-|+.+
T Consensus 246 p~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 246 PTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred ceEeeccccCCcccccceecccceeeeeccccCceeEeccC
No 463
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.34 E-value=21 Score=35.61 Aligned_cols=158 Identities=12% Similarity=0.167 Sum_probs=84.4
Q ss_pred CeeEEEEccCCCEEEEEeCCeEEEEEcC--CCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCC------cEEEE---E
Q 001336 808 AVPCFALSKNDSYVMSASGGKISLFNMM--TFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDS------SIQIY---N 876 (1097)
Q Consensus 808 ~v~~l~~s~dg~~la~~sdg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg------~v~vw---d 876 (1097)
....++-++.+.++++++.++|.+|++. ..+.+.+|.. -+.|..++++. .|++|++--.+. .+|+| +
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence 3344555554455555668899999987 3455666653 37899999999 899999865433 45564 2
Q ss_pred cc--cceEEE-Eeccc---------------------ccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccc--eeeE
Q 001336 877 VR--VDEVKT-KLKGH---------------------QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQA--SKFL 930 (1097)
Q Consensus 877 ~~--~~~~~~-~l~~h---------------------~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~--~~~~ 930 (1097)
.. ..+.+. ++-|| ..++.+++..|-..-|+.|+ ++.+.+|.+.....+. ...+
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~l 175 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFL 175 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEE
Confidence 22 111111 22332 22355566655444444444 5669999887643211 1111
Q ss_pred eecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeC
Q 001336 931 TIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEA 968 (1097)
Q Consensus 931 ~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~ 968 (1097)
.....-..+.....-...+--+.|+|..++..+++..+
T Consensus 176 DFe~~l~~~~~~~~p~~v~ic~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 176 DFERSLIDHIDNFKPTQVAICEGYIAVMSDLEVLVLKL 213 (215)
T ss_pred echhhhhheecCceEEEEEEEeeEEEEecCCEEEEEEE
Confidence 11111000001111122223456777777777777665
No 464
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.32 E-value=12 Score=36.64 Aligned_cols=192 Identities=10% Similarity=0.077 Sum_probs=101.5
Q ss_pred EEEEeCCCCCEEEEEECCC--cEEEEEcccceEEEEecccccCeEEEEEecCCCE-EEEEeCCCcEEEEEcCCCccccee
Q 001336 852 FLAFHPQDNNIIAIGMEDS--SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNV-LVSSGADSQLCVWSTDGWEKQASK 928 (1097)
Q Consensus 852 ~l~~sp~~~~~la~g~~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~-l~s~~~Dg~i~iwd~~~~~~~~~~ 928 (1097)
.+.+. ++.++.+.+.-| .|++||+.+|+.+..-.-....+..=-...-|.. .+-.=.||.-..+|..+-+.....
T Consensus 50 GL~~~--~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~ 127 (262)
T COG3823 50 GLEYL--DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRF 127 (262)
T ss_pred ceeee--CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccc
Confidence 44454 556666655433 7999999999877654322222221111111222 222335777788887774422110
Q ss_pred eEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEEEEeCCCcceeeeeeccCCC---CCEEEEEEecCCCEEEEEecC
Q 001336 929 FLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPREAS---GPITHATYSCDSQSIYVAFEE 1004 (1097)
Q Consensus 929 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~---~~v~~v~~s~dg~~l~s~s~D 1004 (1097)
..+ -.......|++-|..+ ....++.-|.++............. ..++.+.|- ||...|-.-.+
T Consensus 128 ---~y~--------GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t 195 (262)
T COG3823 128 ---SYE--------GEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQT 195 (262)
T ss_pred ---ccC--------CcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeee
Confidence 011 1223444555555554 3345666666555444333211111 223334443 77777777777
Q ss_pred CeEEEEeCCCCceeeeeCCCCcCCC-----CCCCceeeEEEEEcCCCCCEEEEEecCCcE
Q 001336 1005 GSVGVLTASTLRLRCRINPTAYLPT-----NPSLRVYPLVIAGNPTDPNQFALGLTDGGV 1059 (1097)
Q Consensus 1005 g~v~vwd~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v 1059 (1097)
..|..-+.++|+....+..+..++. .|.+..+. |++.|+.+.++++|-.=-.+
T Consensus 196 ~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNG--IA~~~~~~r~~iTGK~wp~l 253 (262)
T COG3823 196 TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNG--IAHDPQQDRFLITGKLWPLL 253 (262)
T ss_pred cceEEEcCCCCcEEEEEEccCCchhcCccccccccccc--eeecCcCCeEEEecCcCcee
Confidence 7888888888888777664443322 13333344 48889766788877544433
No 465
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.93 E-value=40 Score=36.98 Aligned_cols=108 Identities=8% Similarity=-0.030 Sum_probs=50.8
Q ss_pred EEEEEeCC-----CcEEEEECCCCcee---EEeecCCcCe--EEEeecccCCccEEEEEcC-----CCeEEEEEcCCCCc
Q 001336 442 SVVTCGED-----RVIKVWDAVTGTKQ---YIFEGHESPV--YSICPHHKENIQFIFSTAT-----DGKIKAWLYDNLGS 506 (1097)
Q Consensus 442 ~l~s~s~d-----~~i~iwd~~~~~~~---~~~~~h~~~v--~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~ 506 (1097)
+++.|+.+ ..+..+|+.+.+.. ..+..-..+. .+++. . ++.+.+.|+. ...+..||+.+.+-
T Consensus 75 lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~--~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 75 IYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY--K-DGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred EEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE--E-CCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 56666654 35667777766531 2221111111 12222 1 2356666664 23577777765432
Q ss_pred eeeecCCC-CceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCee
Q 001336 507 RVDYDAPG-HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV 552 (1097)
Q Consensus 507 ~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 552 (1097)
...-.... ......+..-+++..+.++.++.....+..||+.+.+-
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 22111111 12222233446677777765433223467889887643
No 466
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.89 E-value=72 Score=39.83 Aligned_cols=167 Identities=14% Similarity=0.117 Sum_probs=104.4
Q ss_pred CCCCeEEEEEe---CC---CCCEEEEEECCCcEEEEEc------cc---------ceEEEEecc---cccCeEEEEEecC
Q 001336 846 PPPAATFLAFH---PQ---DNNIIAIGMEDSSIQIYNV------RV---------DEVKTKLKG---HQKRITGLAFSNT 901 (1097)
Q Consensus 846 ~~~~i~~l~~s---p~---~~~~la~g~~dg~v~vwd~------~~---------~~~~~~l~~---h~~~V~~l~~s~d 901 (1097)
...+|..|.|. .. ..++|++-. ...+.|+.. .. ...+..+.. -..+...++|+|.
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 45678888887 21 224555544 556777771 11 123333332 1235678999984
Q ss_pred -CCEEEEEeCCCcEEEEEcCCCcccceeeEe---ecCCCC-C---CccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcce
Q 001336 902 -LNVLVSSGADSQLCVWSTDGWEKQASKFLT---IPNGRT-A---SALADTRVQFHLDQTHLLAVHETQIAIYEAPKLEC 973 (1097)
Q Consensus 902 -g~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~---~~~~~~-~---~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~ 973 (1097)
...+|..+..|...||++..........+. ...|.. . ..+.-..+.|.++...|++.....+.++|+++...
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~ 236 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQ 236 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCCc
Confidence 468999999999999999322222111111 112221 0 01344588999999999999999999999998876
Q ss_pred eeeeeccCCCCCEEEEEEecC--CCEEEEEecCCeEEEEeCCCC
Q 001336 974 LKQFVPREASGPITHATYSCD--SQSIYVAFEEGSVGVLTASTL 1015 (1097)
Q Consensus 974 ~~~~~~~~h~~~v~~v~~s~d--g~~l~s~s~Dg~v~vwd~~~~ 1015 (1097)
...+........|..+.-+++ +..++. ....|...++...
T Consensus 237 ~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 237 TEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKSS 278 (765)
T ss_pred cchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccCC
Confidence 442332345678999999988 333332 3467888888774
No 467
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.75 E-value=5.5 Score=50.39 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=45.2
Q ss_pred CeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCce
Q 001336 943 DTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRL 1017 (1097)
Q Consensus 943 v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~ 1017 (1097)
+.+..+..+...+.....+.+.+|+.........+...++.. +.++..++++..||.+..||...+..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 201 SLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE-------SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC-------ccCCceEEEEEecCCEEeeecCCCce
Confidence 344444444444554555666666666555544454333222 88999999999999999999999755
No 468
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=88.33 E-value=30 Score=37.09 Aligned_cols=166 Identities=12% Similarity=0.091 Sum_probs=88.5
Q ss_pred cEEEEECCCCceeEEeec------CCcCeEEEeecccCC----ccEEEEEcCCCeEEEEEcCCCCceeeecCC-------
Q 001336 451 VIKVWDAVTGTKQYIFEG------HESPVYSICPHHKEN----IQFIFSTATDGKIKAWLYDNLGSRVDYDAP------- 513 (1097)
Q Consensus 451 ~i~iwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------- 513 (1097)
.|.+||+.+++.++++.- ....+..+.+...+. +-..++-+..+.|.++|+.+++........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 577888888888776542 234567777755332 233444455578999998876543322111
Q ss_pred ------------CCceEEEEEcc---CCCEEEEeeeCCCCCceEEEEeCCC-----C---------eeeEEecCCCCcce
Q 001336 514 ------------GHSSTMMAYSA---DGARLFSCGTNKEGESYLVEWNESE-----G---------AVKRTYHGLGKRSV 564 (1097)
Q Consensus 514 ------------~~~v~~~~~s~---~~~~l~~~~~~~~~~~~i~~wd~~~-----~---------~~~~~~~~~~~~~v 564 (1097)
...+..++.+| +++.|......+ -.+|.+.+ . ..++.+ +......
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s 188 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQS 188 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-cccCCCC
Confidence 11355666655 666776655332 12333221 1 011111 2211244
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceEEEE-ecCCCCCCcceEEEcC--CCCEEEE
Q 001336 565 GVVQFDTTKNRFLAAGDEFMIKFWDMDNV---NLLASI-DADGGLQASPCIRFNK--EGILLAV 622 (1097)
Q Consensus 565 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~-~~~~~~~~v~~v~~s~--~~~~l~s 622 (1097)
..++++++|..+++--..+.|..|+..+. +....+ ........+..+.+.+ +|.+.+.
T Consensus 189 ~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~ 252 (287)
T PF03022_consen 189 DGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL 252 (287)
T ss_dssp CEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred ceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEE
Confidence 56788898888888889999999998861 122222 2222134566777777 5544443
No 469
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.04 E-value=12 Score=41.80 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=28.8
Q ss_pred EEEcCCC--CCEEEEEecCCcEEEEecCCCCcccCCCCCCCC
Q 001336 1040 IAGNPTD--PNQFALGLTDGGVYIIEPLEAEGRWGTSPPNEN 1079 (1097)
Q Consensus 1040 i~~~p~~--~~~l~s~~~Dg~v~~W~~~~~~~~~~~~~~~~~ 1079 (1097)
.+|+|+. ...|+.-+.|+.+|+|++++...-|...+|.-+
T Consensus 171 a~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpgepgR 212 (741)
T KOG4460|consen 171 AAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPGEPGR 212 (741)
T ss_pred ccccCCccCCceEEEEecCcEEEEEecCCcchhhccCCCcCC
Confidence 4777754 567777788888888888877777776666544
No 470
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=87.87 E-value=47 Score=43.23 Aligned_cols=149 Identities=11% Similarity=0.123 Sum_probs=80.6
Q ss_pred CCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCC
Q 001336 469 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 548 (1097)
Q Consensus 469 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 548 (1097)
|...++.+.- +++|..+=. .|+.++.||.....-...-......+..+...-||+..+ .++ + .+-|+.
T Consensus 361 H~A~LTgv~~--~~~ge~lRl--Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA---k~~--~---~l~nLS 428 (1774)
T PF11725_consen 361 HIAHLTGVHT--DPDGEQLRL--HDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA---KDD--D---TLVNLS 428 (1774)
T ss_pred HHHHhhcccc--CCCCCeEEe--ecCceeeeccccceecCCCCcccchhhhhcccCCCceEe---cCC--C---ceeecC
Confidence 5555555533 444444432 456777776654321110111222455555556666555 111 1 233444
Q ss_pred CCeeeEEecCCCCcceEEEEEcCCCCE-EEEEeCCCcEEEEECCCC------ceEEEEecCCCCCCcceEEEcCCCCEEE
Q 001336 549 EGAVKRTYHGLGKRSVGVVQFDTTKNR-FLAAGDEFMIKFWDMDNV------NLLASIDADGGLQASPCIRFNKEGILLA 621 (1097)
Q Consensus 549 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 621 (1097)
.+.....+. ..+.+....+++.. ++++-+...+.+|++... +....+...++.....+|.++++ .|+
T Consensus 429 s~~~~~~~v----~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d--rLF 502 (1774)
T PF11725_consen 429 SGQMSEAEV----DKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND--RLF 502 (1774)
T ss_pred CCCcchhhh----hhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCC--eEE
Confidence 443221111 24566777888877 455556667799998753 12233443344556778888876 688
Q ss_pred EEECCCcEEEEEcC
Q 001336 622 VSTNDNGIKILANA 635 (1097)
Q Consensus 622 s~~~dg~i~iw~~~ 635 (1097)
++..+|.++.=++.
T Consensus 503 vADseGkLYsa~l~ 516 (1774)
T PF11725_consen 503 VADSEGKLYSADLP 516 (1774)
T ss_pred EEeCCCCEEecccc
Confidence 89999988876554
No 471
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.55 E-value=43 Score=36.72 Aligned_cols=56 Identities=2% Similarity=-0.125 Sum_probs=31.1
Q ss_pred CeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCC----eEEEEeCCCCce
Q 001336 961 TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEG----SVGVLTASTLRL 1017 (1097)
Q Consensus 961 ~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg----~v~vwd~~~~~~ 1017 (1097)
..+..||..+.+-...-.... .......+...++++.+.|+.++ .+.+||..+.+.
T Consensus 139 ~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 139 NKSYLFNLETQEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred ceEEEEcCCCCCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 468889988654322111101 12222333455778888887664 356788877654
No 472
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.42 E-value=38 Score=42.73 Aligned_cols=144 Identities=14% Similarity=0.206 Sum_probs=92.8
Q ss_pred ECCCcEEEEEcccceEEEEecccccCeEEEEEe--------cCCCEEEEEeCCCcEEEEEcCCCccccee-----eEeec
Q 001336 867 MEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS--------NTLNVLVSSGADSQLCVWSTDGWEKQASK-----FLTIP 933 (1097)
Q Consensus 867 ~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s--------~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~-----~~~~~ 933 (1097)
+-|..+.+|+++++.....+.+-...|..|..- |.=+++...+.--.|.++-+.-.+..... .+.+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 458889999999987788888777777776543 22244444444555777665443321111 11121
Q ss_pred CCCCCCccCCeEEEEcCCCcEEEEEeCCeEEE--EeCCCc---c-ee-------------ee-eec-cCCCCCEEEEEEe
Q 001336 934 NGRTASALADTRVQFHLDQTHLLAVHETQIAI--YEAPKL---E-CL-------------KQ-FVP-REASGPITHATYS 992 (1097)
Q Consensus 934 ~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~v--wd~~~~---~-~~-------------~~-~~~-~~h~~~v~~v~~s 992 (1097)
. .+..|.++....+|+.+.+|.||.|+- |....+ + +- .. +.. ..+..+|..++..
T Consensus 176 ~----dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 176 V----DGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred c----CCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 1 114578888899999999998885542 222221 1 10 00 001 2567899999999
Q ss_pred cCCCEEEEEecCCeEEEEeCCC
Q 001336 993 CDSQSIYVAFEEGSVGVLTAST 1014 (1097)
Q Consensus 993 ~dg~~l~s~s~Dg~v~vwd~~~ 1014 (1097)
.....|.+-++.|+|++|++..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 8888899999999999999977
No 473
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.30 E-value=13 Score=44.33 Aligned_cols=174 Identities=11% Similarity=0.136 Sum_probs=93.4
Q ss_pred CCEEEEEeCCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEE
Q 001336 818 DSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLA 897 (1097)
Q Consensus 818 g~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~ 897 (1097)
+.+++++..+.|.||+.+...... ...++..+...| ... ...|+.+..|. ..| .|+.|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~~--~~~D~~~s~~p----------~PH--tIN~i~ 107 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EFT--STPDRLISTWP----------FPH--TINFIK 107 (717)
T ss_pred CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---ccc--ccccccccCCC----------CCc--eeeEEE
Confidence 788889899999999986532211 011111222222 111 22344333332 112 133333
Q ss_pred Ee--cCCCEEEEEeCCCcEEEEEcCCCc---------cc--ceeeEeecCCCCCCccCCeEEEEc--CCCcEEEEEe-CC
Q 001336 898 FS--NTLNVLVSSGADSQLCVWSTDGWE---------KQ--ASKFLTIPNGRTASALADTRVQFH--LDQTHLLAVH-ET 961 (1097)
Q Consensus 898 ~s--~dg~~l~s~~~Dg~i~iwd~~~~~---------~~--~~~~~~~~~~~~~~~~~v~~l~~s--~dg~~l~~~~-d~ 961 (1097)
.. -+...|+.+.+||.|.+|.++.-- .. ..+....+.-+......+.++++. ...++||++. ..
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 32 234677888888888888653200 00 000000011111112457788888 8888899864 45
Q ss_pred eEEEEeCCCcc-eeeeeeccCCCCCEEEEEEecCC---C---EEEEEecCCeEEEEeC
Q 001336 962 QIAIYEAPKLE-CLKQFVPREASGPITHATYSCDS---Q---SIYVAFEEGSVGVLTA 1012 (1097)
Q Consensus 962 ~v~vwd~~~~~-~~~~~~~~~h~~~v~~v~~s~dg---~---~l~s~s~Dg~v~vwd~ 1012 (1097)
.|.||-....+ .........|...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 67776554321 11111112356789999997754 2 7888999999999887
No 474
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.08 E-value=32 Score=37.78 Aligned_cols=160 Identities=18% Similarity=0.186 Sum_probs=88.3
Q ss_pred CccceEEEEEccCCceeeeeccCcE------EEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeE
Q 001336 738 TAMRVSRLIYTNSGLAILALASNAV------HKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPC 811 (1097)
Q Consensus 738 ~~~~i~~l~~spdg~~l~~~~~dg~------i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~ 811 (1097)
.-+.++.+.+.+++..+++.+++|. +..+++..... ..+.......+.+-+.. |.... . ......+
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~-G~~~~----~--~~~D~Eg 89 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPD-GQPFP----K--NGLDPEG 89 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCC-CCcCC----c--CCCChhH
Confidence 3467889999976667777787776 54444432100 00001001011111111 11110 0 1225567
Q ss_pred EEEccCCCEEEEEe-C------CeEEEEEcCCCceeEEeC---------------CCCCCeEEEEEeCCCCCEEEEEECC
Q 001336 812 FALSKNDSYVMSAS-G------GKISLFNMMTFKTMTTFM---------------PPPPAATFLAFHPQDNNIIAIGMED 869 (1097)
Q Consensus 812 l~~s~dg~~la~~s-d------g~i~iwd~~~~~~~~~~~---------------~~~~~i~~l~~sp~~~~~la~g~~d 869 (1097)
|++.++|.++++.. + ..|..++.. |+....+. ..+...-+|+++| +++.|.++.+.
T Consensus 90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~ 167 (326)
T PF13449_consen 90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMES 167 (326)
T ss_pred eEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECc
Confidence 88888888888776 6 668888875 65544431 1234578999999 88866555432
Q ss_pred -----C--c-------EEEEEcc--c-ce----EEEEecc-----cccCeEEEEEecCCCEEEE
Q 001336 870 -----S--S-------IQIYNVR--V-DE----VKTKLKG-----HQKRITGLAFSNTLNVLVS 907 (1097)
Q Consensus 870 -----g--~-------v~vwd~~--~-~~----~~~~l~~-----h~~~V~~l~~s~dg~~l~s 907 (1097)
+ . ++++... + ++ ....+.. ....|+.+.+-+++++|+.
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 2 1 4555443 3 22 2233332 3466888888899887764
No 475
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.92 E-value=2.3 Score=29.27 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=23.6
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCC--CeEEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNM--GDVMLW 347 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~d--g~i~iw 347 (1097)
....-....|||||++|+.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 455678999999999998888887 776666
No 476
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=86.74 E-value=51 Score=35.69 Aligned_cols=239 Identities=10% Similarity=-0.007 Sum_probs=116.8
Q ss_pred CCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEeCCe-
Q 001336 750 SGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGK- 828 (1097)
Q Consensus 750 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sdg~- 828 (1097)
++++|+.|+++|...+. +... .+..... .+...|+.+...+..+.|++-+|..
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~--------------------~~~~~kl-----~~~~~v~q~~v~~~~~lLi~Lsgk~~ 65 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQ--------------------PGTLEKL-----IGRRSVTQIWVLEENNVLLMISGKKP 65 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccC--------------------CCCeEEe-----cCcCceEEEEEEhhhCEEEEEeCCcc
Confidence 34689999999977764 2210 0111111 1567899999999999988888766
Q ss_pred -EEEEEcCCCce---------------eEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccc--e--EEEEe--
Q 001336 829 -ISLFNMMTFKT---------------MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD--E--VKTKL-- 886 (1097)
Q Consensus 829 -i~iwd~~~~~~---------------~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~--~--~~~~l-- 886 (1097)
++++++..... ....-++.......+........++.+....+|.++..... + ....+
T Consensus 66 ~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~ 145 (302)
T smart00036 66 QLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFL 145 (302)
T ss_pred eEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhccccc
Confidence 99999843321 01122334434444444311223334444566777644321 1 11110
Q ss_pred -c-ccccCeEEEEEecC--CCEEEEEeCCCcEEEEEcCC--CcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeC
Q 001336 887 -K-GHQKRITGLAFSNT--LNVLVSSGADSQLCVWSTDG--WEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHE 960 (1097)
Q Consensus 887 -~-~h~~~V~~l~~s~d--g~~l~s~~~Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d 960 (1097)
. .-..++..+..+++ ...+..|+..+...+.++.. ................ ....++..-+++.+|++ .|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~---~~p~~i~~l~~~e~Llc-~~ 221 (302)
T smart00036 146 FPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETS---LKPISVVQVPRDEFLLC-YD 221 (302)
T ss_pred ccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccccc---cCceEEEEECCCeEEEE-EC
Confidence 0 11123444443433 45666676642355555533 1100000000000000 01233333444555544 44
Q ss_pred CeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeC
Q 001336 961 TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRIN 1022 (1097)
Q Consensus 961 ~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~ 1022 (1097)
....+-|....+....... .-.....++++.. .+|+.-. ++.|.|+++.+++++..+.
T Consensus 222 ~~~v~Vn~~G~~~~r~~~l-~w~~~p~~~~~~~--pyll~~~-~~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 222 EFGVFVNLYGKRRSRNPIL-HWEFMPESFAYHS--PYLLAFH-DNGIEIRSIKTGELLQELA 279 (302)
T ss_pred cEEEEEeCCCCccccceEE-EcCCcccEEEEEC--CEEEEEc-CCcEEEEECCCCceEEEEe
Confidence 4444555542121111110 1134566777763 5766555 5569999999998876665
No 477
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=86.49 E-value=49 Score=36.71 Aligned_cols=42 Identities=10% Similarity=-0.066 Sum_probs=19.5
Q ss_pred CeEEEEEcCCCCceeeecCCC-CceEEEEEccCCCEEEEeeeC
Q 001336 494 GKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSADGARLFSCGTN 535 (1097)
Q Consensus 494 g~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~ 535 (1097)
..+.+||..+..-...-.... .........-+++..+.++..
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 457788876543322211111 111112223467777777654
No 478
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.44 E-value=7 Score=48.77 Aligned_cols=167 Identities=14% Similarity=0.208 Sum_probs=98.4
Q ss_pred CceEEEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEE
Q 001336 309 PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 388 (1097)
Q Consensus 309 ~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 388 (1097)
|.+.+..++|...-+.+-+-|.=.+. =-+.|..+.+|+.+++..... +.+-...|..|.
T Consensus 68 P~el~eq~~~~~~~~~mGiFpeI~Ra--WiTiDn~L~lWny~~~~e~~~-------------------~d~~shtIl~V~ 126 (1311)
T KOG1900|consen 68 PDELLEQFSNIECKTDMGIFPEIGRA--WITIDNNLFLWNYESDNELAE-------------------YDGLSHTILKVG 126 (1311)
T ss_pred CHHHHHHhcCcceeeeeccchhhcce--EEEeCCeEEEEEcCCCCcccc-------------------ccchhhhheeee
Confidence 45555555555555666666654432 335788999999998654332 444555666655
Q ss_pred E--------ccCCCEEEEEECCCEEEEEEccCCeeeeee------eeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001336 389 W--------SPDGTLFGVAYSKHIVHLYTYHGGDELRNH------LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 454 (1097)
Q Consensus 389 ~--------spd~~~las~~~dg~i~iwd~~~~~~~~~~------~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~i 454 (1097)
. -|.=++|+....--.|.|+-+.-.+..... ..+......|.|+....+|+ +.-+|.|| .+
T Consensus 127 LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR---IF~~G~dg--~l 201 (1311)
T KOG1900|consen 127 LVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR---IFFAGRDG--NL 201 (1311)
T ss_pred eecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc---EEEeecCC--CE
Confidence 3 333345555555555676655422211111 11222345688999777887 55556666 44
Q ss_pred EECC----CC---c-ee----------------EEee-cCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCC
Q 001336 455 WDAV----TG---T-KQ----------------YIFE-GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 503 (1097)
Q Consensus 455 wd~~----~~---~-~~----------------~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 503 (1097)
|.+. +| + |- -.+. .+.++|..+++ +.....+.+-+..|+|.+||+..
T Consensus 202 yEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I--D~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 202 YELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI--DNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe--ccccceeeeeccCceEEEEEccC
Confidence 4431 11 1 11 1223 56778999988 44447899999999999999875
No 479
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.17 E-value=20 Score=45.54 Aligned_cols=34 Identities=29% Similarity=0.503 Sum_probs=27.8
Q ss_pred CCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCce
Q 001336 320 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRER 354 (1097)
Q Consensus 320 ~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~ 354 (1097)
.....++|+|... ++|.|+..|.|.+|-...-+.
T Consensus 36 ~~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve~ 69 (993)
T KOG1983|consen 36 STPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVEF 69 (993)
T ss_pred CCCcceeeccccc-eEEEEEecccEEEecccceEE
Confidence 4666899999988 679999999999998765443
No 480
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=85.94 E-value=65 Score=36.17 Aligned_cols=196 Identities=16% Similarity=0.070 Sum_probs=104.7
Q ss_pred EEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCC-cCe
Q 001336 395 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE-SPV 473 (1097)
Q Consensus 395 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~-~~v 473 (1097)
.+..+..+|.|.-.|..++..+-..... +....+..-.+..+|+ ++.++.++.++..|..+|+.+-...... ..+
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 3444467777777777777643221111 1111222222333676 8888899999999988999888776555 111
Q ss_pred EEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCC---CceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC
Q 001336 474 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG---HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 550 (1097)
Q Consensus 474 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 550 (1097)
..-.+ ..+ ..++.++.++.+...|.+++..+....... ..+..-....++. ++.+..+ . +..+.-.|..+|
T Consensus 146 ~~~~v--~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~-~-~~~~~a~~~~~G 219 (370)
T COG1520 146 ASPPV--VGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDG-Y-DGILYALNAEDG 219 (370)
T ss_pred ecCcE--EcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCC-C-cceEEEEEccCC
Confidence 11111 122 244445467888888877777766644432 1111111122332 3333221 1 225677777777
Q ss_pred eeeEEecCCCCcc---e--E-EE---EEcCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 001336 551 AVKRTYHGLGKRS---V--G-VV---QFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 601 (1097)
Q Consensus 551 ~~~~~~~~~~~~~---v--~-~~---~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 601 (1097)
...-......... + . .+ ...-+ ..++.++.++.+...|..+|+.+-....
T Consensus 220 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 220 TLKWSQKVSQTIGRTAISTTPAVDGGPVYVD-GGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred cEeeeeeeecccCcccccccccccCceEEEC-CcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 6655532211100 1 0 00 01111 2346677788899999999999888865
No 481
>PRK13613 lipoprotein LpqB; Provisional
Probab=84.99 E-value=84 Score=37.56 Aligned_cols=190 Identities=10% Similarity=-0.005 Sum_probs=102.2
Q ss_pred CeeEEEEccCCCEEEEEe-CC-eEEEEEcCCCce----eEEeCCCCCCeEEEEEeCCCCCEEEEEEC--CC--cEEEEEc
Q 001336 808 AVPCFALSKNDSYVMSAS-GG-KISLFNMMTFKT----MTTFMPPPPAATFLAFHPQDNNIIAIGME--DS--SIQIYNV 877 (1097)
Q Consensus 808 ~v~~l~~s~dg~~la~~s-dg-~i~iwd~~~~~~----~~~~~~~~~~i~~l~~sp~~~~~la~g~~--dg--~v~vwd~ 877 (1097)
.+.+++.|+++..+|... ++ .+++..+..+.. ..... ....++.-.|.+ ++. +-+... ++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~Lt~PS~d~-~g~-vWtvd~~~~~~~vl~v~~~ 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRLTSPSWDG-RGD-LWVVDRDPADPRLLWLLQG 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcccCCcCcC-CCC-EEEecCCCCCceEEEEEcC
Confidence 678899999999998877 44 466655533322 11111 133467777877 553 333322 22 2555553
Q ss_pred ccceEEEE-eccccc-CeEEEEEecCCCEEEEEeC---CCcEEEEEcCCCcccc---eeeEeecCCCCCCccCCeEEEEc
Q 001336 878 RVDEVKTK-LKGHQK-RITGLAFSNTLNVLVSSGA---DSQLCVWSTDGWEKQA---SKFLTIPNGRTASALADTRVQFH 949 (1097)
Q Consensus 878 ~~~~~~~~-l~~h~~-~V~~l~~s~dg~~l~s~~~---Dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~v~~l~~s 949 (1097)
+|+.... .....+ +|+.+..|+||..++.... .+.|.+=-+....... .....+.... ..+..+.|.
T Consensus 441 -~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l----~~v~~~~W~ 515 (599)
T PRK13613 441 -DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPEL----EDVTDMSWA 515 (599)
T ss_pred -CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCC----CccceeEEc
Confidence 4443211 112223 7999999999988776443 3556555544322111 1112222211 348999999
Q ss_pred CCCcEEEEE--eC--CeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCC-EEEEEecCCeE
Q 001336 950 LDQTHLLAV--HE--TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQ-SIYVAFEEGSV 1007 (1097)
Q Consensus 950 ~dg~~l~~~--~d--~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~s~Dg~v 1007 (1097)
.++.+++.+ .+ ..++...+......... .+.-..+..++-..+.+ .|+.+..++.|
T Consensus 516 ~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~--~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 516 GDSQLVVLGREEGGVQQARYVQVDGSTPPASA--PAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred CCCEEEEEeccCCCCcceEEEecCCcCccccc--ccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 999988754 33 33444444422221111 12345677777777766 45542455554
No 482
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=84.86 E-value=25 Score=32.01 Aligned_cols=114 Identities=11% Similarity=0.084 Sum_probs=69.5
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcCCCcccc------eeeEeecCCCCCCccCCeEEE---Ec--CCCcEEEEEeCCeEEE
Q 001336 897 AFSNTLNVLVSSGADSQLCVWSTDGWEKQA------SKFLTIPNGRTASALADTRVQ---FH--LDQTHLLAVHETQIAI 965 (1097)
Q Consensus 897 ~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~v~~l~---~s--~dg~~l~~~~d~~v~v 965 (1097)
.|......|+.++.-|.|.|.+........ ...+.+. ..|++++ |. .+...|++++...+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin-------~~italaaG~l~~~~~~D~LliGt~t~lla 77 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN-------QEITALAAGRLKPDDGRDCLLIGTQTSLLA 77 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC-------CceEEEEEEecCCCCCcCEEEEeccceEEE
Confidence 344445577777788888888766532211 1222222 2355554 43 3456788899999999
Q ss_pred EeCCCcceeeeeeccCCCCCEEEEEEec----CCCEEEEEecCCeEEEEeCCCCceeeee
Q 001336 966 YEAPKLECLKQFVPREASGPITHATYSC----DSQSIYVAFEEGSVGVLTASTLRLRCRI 1021 (1097)
Q Consensus 966 wd~~~~~~~~~~~~~~h~~~v~~v~~s~----dg~~l~s~s~Dg~v~vwd~~~~~~~~~~ 1021 (1097)
||+.....+..... ...|.++.+-. +.. |+..+-+..|.-||.+..+.+..+
T Consensus 78 YDV~~N~d~Fyke~---~DGvn~i~~g~~~~~~~~-l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 78 YDVENNSDLFYKEV---PDGVNAIVIGKLGDIPSP-LVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred EEcccCchhhhhhC---ccceeEEEEEecCCCCCc-EEEECceEEEEEeCCCCcEEEEEe
Confidence 99997765544332 45677777632 333 444555778888887766655443
No 483
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.80 E-value=1.3 Score=47.49 Aligned_cols=79 Identities=10% Similarity=0.165 Sum_probs=58.5
Q ss_pred hhhhhhhcccChHHHHHHhcccc-ccCCccccceeeehhhHhhhhHHHhcCChh--HHHHHHHhccccccccChHHHHHH
Q 001336 2 RYFEDMVTNGEWDEVEKYLSGFT-KVDDNRYSMKIFFEIRKQKYLEALDKRDRA--KAVEILVKDLKVFSAFNEDLFKEI 78 (1097)
Q Consensus 2 ~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~i~~q~~~E~l~~~~~~--~a~~~l~~~l~~l~~~~~~~~~~l 78 (1097)
.++-+++.+||-.-|++.+..-. .+.+. ... +.|.+..+.|++++..|... +|+++.|+.++|+......+++.|
T Consensus 160 ~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~-~s~-LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQkl 237 (394)
T KOG2817|consen 160 NQIVEALKERDLEPALEWAESNRQKLKEK-SSS-LEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKL 237 (394)
T ss_pred HHHHHHHHhccchhHHHHHHHhhhhhccc-ccc-HHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHH
Confidence 45677889999888888777531 22221 122 88999999999999999988 999999999999965554555555
Q ss_pred HHhh
Q 001336 79 TQLL 82 (1097)
Q Consensus 79 ~~ll 82 (1097)
--+|
T Consensus 238 m~sl 241 (394)
T KOG2817|consen 238 MGSL 241 (394)
T ss_pred HHHH
Confidence 4433
No 484
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=84.09 E-value=86 Score=35.99 Aligned_cols=139 Identities=9% Similarity=0.077 Sum_probs=72.6
Q ss_pred CCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001336 381 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 460 (1097)
Q Consensus 381 ~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 460 (1097)
...|..+.+.-.|. +-.|+.|| +..||..+++.+... ......+|.++.-+-.|. +..|+.+| |.+.+.+..
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G~ 235 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEGW 235 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhhc
Confidence 45788888887774 56677787 778888887755421 112235677777777776 67777665 666665442
Q ss_pred ceeEEeec-CCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCC---CCceEEEEEccCCCEEEE
Q 001336 461 TKQYIFEG-HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP---GHSSTMMAYSADGARLFS 531 (1097)
Q Consensus 461 ~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~ 531 (1097)
+....... ..+.|..+.- +..| .+-.|+..|..+. .............. -..|.++....+|..-+.
T Consensus 236 ~~sn~~~~lp~~~I~ll~q--D~qG-~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~ 306 (671)
T COG3292 236 RASNWGPMLPSGNILLLVQ--DAQG-ELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVG 306 (671)
T ss_pred cccccCCCCcchheeeeec--ccCC-CEEEeecccceeE-ecCCCCccccccccCCccccccceeeccCCCEeee
Confidence 22211111 2334444432 3333 4555665554322 22222222111111 124556666666665544
No 485
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.58 E-value=7.4 Score=39.66 Aligned_cols=73 Identities=8% Similarity=0.116 Sum_probs=52.3
Q ss_pred EccCCCEEEEEECCCEEEEEEccCCeeeeeeee----ee-------cccCcEEEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001336 389 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLE----IE-------AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 457 (1097)
Q Consensus 389 ~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~----l~-------~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~ 457 (1097)
+..++.+|++.+.+|.+++||+.+++.+..... +. .....|..+..+.+|. -+++-+ +|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~--PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV--PIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC--EEEEEe-CCCEEEecc
Confidence 445899999999999999999999876543211 22 3556788999998887 455554 477899986
Q ss_pred CCCceeE
Q 001336 458 VTGTKQY 464 (1097)
Q Consensus 458 ~~~~~~~ 464 (1097)
.-+..+.
T Consensus 95 ~L~~W~~ 101 (219)
T PF07569_consen 95 DLGCWIR 101 (219)
T ss_pred ccceeEE
Confidence 5554443
No 486
>PLN02193 nitrile-specifier protein
Probab=83.25 E-value=99 Score=36.05 Aligned_cols=150 Identities=10% Similarity=-0.029 Sum_probs=72.3
Q ss_pred EEEEEeCC-----CcEEEEECCCCceeEEeec---CCcC-eEEEeecccCCccEEEEEcCCC-----eEEEEEcCCCCce
Q 001336 442 SVVTCGED-----RVIKVWDAVTGTKQYIFEG---HESP-VYSICPHHKENIQFIFSTATDG-----KIKAWLYDNLGSR 507 (1097)
Q Consensus 442 ~l~s~s~d-----~~i~iwd~~~~~~~~~~~~---h~~~-v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~ 507 (1097)
+++.|+.+ +.+..+|+.+.+....-.. .... -.+++. . ++.+.+.|+.++ .+..||+.+..-.
T Consensus 231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~--~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA--D-EENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred EEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE--E-CCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 56666654 3688899887654432111 1111 122222 1 235667776543 3566776543321
Q ss_pred eeecC---CCCc-eEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecC---CCCcceEEEEEcCCCCEEEEEe
Q 001336 508 VDYDA---PGHS-STMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG---LGKRSVGVVQFDTTKNRFLAAG 580 (1097)
Q Consensus 508 ~~~~~---~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~ 580 (1097)
..... .... -..++ .-+++.++.++.++.....+.+||+.+.+-...-.. .......++ ..-+++.++.|+
T Consensus 308 ~~~~~~~~~~~R~~~~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG 385 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGG 385 (470)
T ss_pred eCCCCCCCCCCCCCcEEE-EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECC
Confidence 11100 0001 11122 235677777765443335689999987754332211 111011122 223456777777
Q ss_pred CC--------------CcEEEEECCCCceE
Q 001336 581 DE--------------FMIKFWDMDNVNLL 596 (1097)
Q Consensus 581 ~d--------------g~i~iwd~~~~~~~ 596 (1097)
.+ ..+.+||+.+.+-.
T Consensus 386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 386 EIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred ccCCccccccCccceeccEEEEEcCcCEEE
Confidence 43 24788888876543
No 487
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=83.22 E-value=86 Score=35.33 Aligned_cols=151 Identities=11% Similarity=-0.035 Sum_probs=81.3
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcc
Q 001336 893 ITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLE 972 (1097)
Q Consensus 893 V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~ 972 (1097)
...+..++||.+++.+..-..++-||-... .+..+..... ..+..+.|.+++.+++++..|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~---~W~~~~~~~~-----~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQP---YWQPHNRASA-----RRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCc---ceEEecCCCc-----cceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence 445566788877766543332233443220 0112222221 4578999999999998887777554 333343
Q ss_pred e-----eeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCC
Q 001336 973 C-----LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDP 1047 (1097)
Q Consensus 973 ~-----~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~ 1047 (1097)
. ........-...+.++.|.+|+..++ ++..|.+.... +.|+...+..... +-....+.+ .|.+ +
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~G~tW~~~~~~~----~~~~~ly~v--~f~~-~- 381 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DGGKSWKRDKGAD----NIAANLYSV--KFFD-D- 381 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CCCcceeEccccC----CCCcceeEE--EEcC-C-
Confidence 1 12111111123589999998887666 55678766553 5555543332111 122445655 5544 3
Q ss_pred CEEEEEecCCcEEEE
Q 001336 1048 NQFALGLTDGGVYII 1062 (1097)
Q Consensus 1048 ~~l~s~~~Dg~v~~W 1062 (1097)
......+.+|.|.-|
T Consensus 382 ~~g~~~G~~G~il~~ 396 (398)
T PLN00033 382 KKGFVLGNDGVLLRY 396 (398)
T ss_pred CceEEEeCCcEEEEe
Confidence 445556677776544
No 488
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.09 E-value=4.6 Score=41.17 Aligned_cols=73 Identities=11% Similarity=0.124 Sum_probs=51.3
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCCCccccee--eEeecCCCC----CCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCC
Q 001336 898 FSNTLNVLVSSGADSQLCVWSTDGWEKQASK--FLTIPNGRT----ASALADTRVQFHLDQTHLLAVHETQIAIYEAPK 970 (1097)
Q Consensus 898 ~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~--~~~~~~~~~----~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~ 970 (1097)
+..++++|+....+|.+++||+.+.+..... ...+..... .....|..+.++.+|.-|++-.+|..+.|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence 4457888999999999999999997653322 111121100 122568889999999988887778899998763
No 489
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=82.74 E-value=38 Score=30.92 Aligned_cols=115 Identities=11% Similarity=0.032 Sum_probs=70.9
Q ss_pred EEcCCCcEEEE-EeCCeEEEEeCCCcc--------eeeeeeccCCCCCEEEEEEec-----CCCEEEEEecCCeEEEEeC
Q 001336 947 QFHLDQTHLLA-VHETQIAIYEAPKLE--------CLKQFVPREASGPITHATYSC-----DSQSIYVAFEEGSVGVLTA 1012 (1097)
Q Consensus 947 ~~s~dg~~l~~-~~d~~v~vwd~~~~~--------~~~~~~~~~h~~~v~~v~~s~-----dg~~l~s~s~Dg~v~vwd~ 1012 (1097)
.|.....-|++ +..++|.|++..... .+..+. -...|++++-.+ +...|+.|+ ...+..||+
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN---in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN---INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE---CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 34444445655 577888888876332 223332 256777776544 334566665 567999999
Q ss_pred CCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCCCcccCC
Q 001336 1013 STLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGT 1073 (1097)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~~~~~~~ 1073 (1097)
....-+.... ++ +.|.++.+.-..+...-++..+...+|.=+|-.-.|..|.+
T Consensus 81 ~~N~d~Fyke----~~----DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSDLFYKE----VP----DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCchhhhhh----Cc----cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 8876543222 22 44777755433333455666777778999998888888865
No 490
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=82.38 E-value=92 Score=35.05 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=10.1
Q ss_pred cEEEEECCCCceeE
Q 001336 451 VIKVWDAVTGTKQY 464 (1097)
Q Consensus 451 ~i~iwd~~~~~~~~ 464 (1097)
.+.+||..+.+...
T Consensus 190 ~v~~YD~~t~~W~~ 203 (376)
T PRK14131 190 EVLSYDPSTNQWKN 203 (376)
T ss_pred eEEEEECCCCeeeE
Confidence 58889988776543
No 491
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=82.04 E-value=29 Score=40.44 Aligned_cols=129 Identities=12% Similarity=0.044 Sum_probs=68.6
Q ss_pred EEEcCCCcEEEEEeCCeEEEEeCCCcceeeeeeccCCC-CCEEEEEEecCCCEEEEEec-------------CCeEEEEe
Q 001336 946 VQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREAS-GPITHATYSCDSQSIYVAFE-------------EGSVGVLT 1011 (1097)
Q Consensus 946 l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~-~~v~~v~~s~dg~~l~s~s~-------------Dg~v~vwd 1011 (1097)
+.+-++|.+++... ..++.+|+. |+.+..+...+.. .-=..+..-|+|.+|+.+.. .-.|...|
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 56678888777644 888888886 5665555543310 00124667889999887772 12355666
Q ss_pred CCCCceeeeeCCCCcCC-CC-------------------CCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCCCccc
Q 001336 1012 ASTLRLRCRINPTAYLP-TN-------------------PSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRW 1071 (1097)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~-~~-------------------h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~~~~~ 1071 (1097)
.+|+.+..+....++. .. .-.++. ++.+.+.++.+++++=.-..|...|..+++..|
T Consensus 231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~N--si~yd~~dd~iivSsR~~s~V~~Id~~t~~i~W 307 (477)
T PF05935_consen 231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHIN--SIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKW 307 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EE--EEEEETTTTEEEEEETTT-EEEEEE-TTS-EEE
T ss_pred -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccC--ccEEeCCCCeEEEEcCcceEEEEEECCCCcEEE
Confidence 7777766655444331 10 112334 447778655666655555689999999999999
Q ss_pred CCCCCCCC
Q 001336 1072 GTSPPNEN 1079 (1097)
Q Consensus 1072 ~~~~~~~~ 1079 (1097)
-+.+|..-
T Consensus 308 ilg~~~~w 315 (477)
T PF05935_consen 308 ILGPPGGW 315 (477)
T ss_dssp EES-STT-
T ss_pred EeCCCCCC
Confidence 99998744
No 492
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=81.08 E-value=0.33 Score=52.99 Aligned_cols=141 Identities=18% Similarity=0.288 Sum_probs=98.0
Q ss_pred eeeCCCCCCcceeecCC------CCceEEEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEee
Q 001336 291 VAYTPQSLGQSSYSTDD------LPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWE 364 (1097)
Q Consensus 291 ~~~s~~~~~~~~~~~~~------~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~ 364 (1097)
..+-+.+..+++...+. ..++....+.-.+.--.++|.-+|..+++.+-..+.+.|||+++.....
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-------- 111 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-------- 111 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH--------
Confidence 33445554455443333 2345555666677778889999999888888889999999998654321
Q ss_pred ccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEE
Q 001336 365 LGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVV 444 (1097)
Q Consensus 365 ~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~ 444 (1097)
+-.+-+..-.-+.|++-+..++.+...|.+.|++..+.+.+. ....|...+++++|.+.+. .+
T Consensus 112 -----------LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vi 174 (615)
T KOG2247|consen 112 -----------LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VI 174 (615)
T ss_pred -----------HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---ee
Confidence 111222222238899999999999999999999987754333 2334999999999999885 77
Q ss_pred EEeCCCcEEEEE
Q 001336 445 TCGEDRVIKVWD 456 (1097)
Q Consensus 445 s~s~d~~i~iwd 456 (1097)
.++.|..+.+-.
T Consensus 175 l~dcd~~L~v~~ 186 (615)
T KOG2247|consen 175 LCDCDNTLSVTT 186 (615)
T ss_pred ecCcHHHHHHhh
Confidence 888777666544
No 493
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=80.99 E-value=1.7 Score=40.81 Aligned_cols=78 Identities=15% Similarity=0.304 Sum_probs=51.5
Q ss_pred eeehhhHhhhhHHHhcCChhHHHHHHHhccccccccChHHHHHHHHhhccccccchhhhhccCC-------chHHHHHHH
Q 001336 35 IFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGD-------TKSARGIML 107 (1097)
Q Consensus 35 ~~~~i~~q~~~E~l~~~~~~~a~~~l~~~l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l~ 107 (1097)
++|-|+-+.||+|+..|...+|-.||.+.-.-+.....+++++|..+....++.+++....++. .+.+-..|+
T Consensus 40 lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s~~lL~ 119 (142)
T PF04494_consen 40 LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDSFSLLL 119 (142)
T ss_dssp GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHHHHHHH
Confidence 8999999999999999999999999997555454445677888887666665554444333333 233334555
Q ss_pred HHHHh
Q 001336 108 AELKK 112 (1097)
Q Consensus 108 ~~~~~ 112 (1097)
..|++
T Consensus 120 ~fL~~ 124 (142)
T PF04494_consen 120 QFLQE 124 (142)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
No 494
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=80.78 E-value=8.4 Score=37.67 Aligned_cols=31 Identities=35% Similarity=0.570 Sum_probs=25.3
Q ss_pred CCeEEEEEccCC------CEEEEEECCCEEEEEEccC
Q 001336 382 ASVNRVMWSPDG------TLFGVAYSKHIVHLYTYHG 412 (1097)
Q Consensus 382 ~~V~~v~~spd~------~~las~~~dg~i~iwd~~~ 412 (1097)
..|.+++|||.| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 389999999943 3788889999999998653
No 495
>PRK13615 lipoprotein LpqB; Provisional
Probab=80.74 E-value=1.3e+02 Score=35.59 Aligned_cols=154 Identities=9% Similarity=0.003 Sum_probs=90.3
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCC-Cccccee
Q 001336 850 ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG-WEKQASK 928 (1097)
Q Consensus 850 i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~-~~~~~~~ 928 (1097)
..+++.++ ++..+|....++.++++... +.....+. ...++.-.|.++| .+-+...+...++..... ++. .
T Consensus 336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~---~ 407 (557)
T PRK13615 336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVG---H 407 (557)
T ss_pred cccceEcC-CCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCce---E
Confidence 37889999 88888888778888887655 22222222 2246667788887 555555444455554433 221 1
Q ss_pred eEeecCCCCCCccCCeEEEEcCCCcEEEEE-e---CCeEEEEeCCC-cc---ee-ee-eeccCCCCCEEEEEEecCCCEE
Q 001336 929 FLTIPNGRTASALADTRVQFHLDQTHLLAV-H---ETQIAIYEAPK-LE---CL-KQ-FVPREASGPITHATYSCDSQSI 998 (1097)
Q Consensus 929 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~---d~~v~vwd~~~-~~---~~-~~-~~~~~h~~~v~~v~~s~dg~~l 998 (1097)
.+...-. ....|..+..|+||..++.- . .++|.|--+.. +. .+ .. .....-...+.++.|..++.++
T Consensus 408 ~v~v~~~---~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~la 484 (557)
T PRK13615 408 PVAVSWT---ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVA 484 (557)
T ss_pred Eeecccc---CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEE
Confidence 1121111 12569999999999998873 2 36677644332 22 12 11 1111123488999999999986
Q ss_pred EEEe---cCCeEEEEeCCC
Q 001336 999 YVAF---EEGSVGVLTAST 1014 (1097)
Q Consensus 999 ~s~s---~Dg~v~vwd~~~ 1014 (1097)
+.+. .+..+++..+..
T Consensus 485 Vl~~~~~~~~~v~~v~v~g 503 (557)
T PRK13615 485 TLTLAPDGERQVELHQVGG 503 (557)
T ss_pred EEeccCCCCceEEEEECCC
Confidence 6552 335566666653
No 496
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=79.66 E-value=53 Score=34.87 Aligned_cols=94 Identities=12% Similarity=0.227 Sum_probs=59.4
Q ss_pred CeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEE------CCCEEEEEEccCCee
Q 001336 342 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY------SKHIVHLYTYHGGDE 415 (1097)
Q Consensus 342 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~------~dg~i~iwd~~~~~~ 415 (1097)
..|++||..+.+-.. .-.+-.+.|+.+.|..+.++++.|. ....+..||..+..
T Consensus 16 ~~lC~yd~~~~qW~~-------------------~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~- 75 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS-------------------PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT- 75 (281)
T ss_pred CEEEEEECCCCEeec-------------------CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-
Confidence 359999988776433 1334567899999997777777774 35578899998764
Q ss_pred eeeeeeeec-----ccCcEEEEEEecCCCcEEEEEEe-CCC--cEEEEECC
Q 001336 416 LRNHLEIEA-----HVGSVNDLAFSYPNKQLSVVTCG-EDR--VIKVWDAV 458 (1097)
Q Consensus 416 ~~~~~~l~~-----h~~~V~~l~~s~d~~~~~l~s~s-~d~--~i~iwd~~ 458 (1097)
... +.+ -.++|+.+.+..++...+.+.|. .++ .|..||=.
T Consensus 76 w~~---~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 76 WSS---LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred eee---cCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 221 222 34788888885433321444443 333 46666633
No 497
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=79.62 E-value=39 Score=37.82 Aligned_cols=144 Identities=11% Similarity=0.195 Sum_probs=87.7
Q ss_pred EccCCCEEEEEe--CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCC-------CCCEEEEEECCCcEEEEEcc-cceEE
Q 001336 814 LSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ-------DNNIIAIGMEDSSIQIYNVR-VDEVK 883 (1097)
Q Consensus 814 ~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~-------~~~~la~g~~dg~v~vwd~~-~~~~~ 883 (1097)
...|..+|...+ ...++-.|++.|+.+..+..|... -+.|.|. +.+.|+ |-.+..|.-.|.+ .|..+
T Consensus 475 h~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi 551 (776)
T COG5167 475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKI 551 (776)
T ss_pred ecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCce
Confidence 345556665544 467888899999999998877655 5677762 223343 4445555444543 23222
Q ss_pred EEecc----cccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEe
Q 001336 884 TKLKG----HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVH 959 (1097)
Q Consensus 884 ~~l~~----h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~ 959 (1097)
..... -.....+..-. ...++|.+|..|-|++||--...... .+. ..+..|..+..+.+|++++++.
T Consensus 552 ~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKt--alP------~lG~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 552 KVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKT--ALP------GLGDAIKHIDVTANGKHILATC 622 (776)
T ss_pred eeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhh--cCc------ccccceeeeEeecCCcEEEEee
Confidence 22111 11112222222 34589999999999999954422110 111 1125689999999999999988
Q ss_pred CCeEEEEeCC
Q 001336 960 ETQIAIYEAP 969 (1097)
Q Consensus 960 d~~v~vwd~~ 969 (1097)
...+.+-|+.
T Consensus 623 k~yllL~d~~ 632 (776)
T COG5167 623 KNYLLLTDVP 632 (776)
T ss_pred cceEEEEecc
Confidence 8888888875
No 498
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=79.41 E-value=34 Score=36.24 Aligned_cols=103 Identities=13% Similarity=0.175 Sum_probs=64.3
Q ss_pred cEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEc------CCCeEEEEEcCCCCceeeecC----CCCceEEE
Q 001336 451 VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA------TDGKIKAWLYDNLGSRVDYDA----PGHSSTMM 520 (1097)
Q Consensus 451 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~ 520 (1097)
.|++||..+.+....-.+-.+.|+++.|. .+.++++.|. ....+..||+.+..-...... -.+++..+
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~--~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWA--SNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEe--cCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 69999988877766556677889999985 3335666653 456788888876543222221 13567777
Q ss_pred EEc-cCCCEEEEeeeCCCCCceEEEEeCCCCeeeEE
Q 001336 521 AYS-ADGARLFSCGTNKEGESYLVEWNESEGAVKRT 555 (1097)
Q Consensus 521 ~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 555 (1097)
.+. .|+..+..++....+...|..||-.+...+..
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGS 130 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEeccc
Confidence 663 34544554444355677788888665554443
No 499
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=79.12 E-value=45 Score=38.05 Aligned_cols=123 Identities=15% Similarity=0.049 Sum_probs=0.0
Q ss_pred EEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCC------cEE
Q 001336 882 VKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQ------THL 955 (1097)
Q Consensus 882 ~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg------~~l 955 (1097)
.+..+...-..-+.|+|.|||++|++--..|.|++++..++.......+........ ......++|+|+- .+|
T Consensus 21 ~~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~g-e~GLlglal~PdF~~~~~n~~l 99 (454)
T TIGR03606 21 DKKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQ-HNGLLGLALHPDFMQEKGNPYV 99 (454)
T ss_pred EEEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCC-CCceeeEEECCCccccCCCcEE
Q ss_pred EEEe-----------CCeEEEEeCCCc-------ceeeeeeccCCCCCEEEEEEecCCCEEEEEecCC
Q 001336 956 LAVH-----------ETQIAIYEAPKL-------ECLKQFVPREASGPITHATYSCDSQSIYVAFEEG 1005 (1097)
Q Consensus 956 ~~~~-----------d~~v~vwd~~~~-------~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg 1005 (1097)
.++. ...|.-|.+... +.+..-........-..++|.|||.++++.++.+
T Consensus 100 Yvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 100 YISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred EEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
No 500
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=79.04 E-value=30 Score=35.70 Aligned_cols=144 Identities=12% Similarity=0.087 Sum_probs=81.1
Q ss_pred EEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCC---CeeeEEec--CCCCcceEEEEEcC
Q 001336 497 KAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE---GAVKRTYH--GLGKRSVGVVQFDT 571 (1097)
Q Consensus 497 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~--~~~~~~v~~~~~~~ 571 (1097)
.+||+.+.+.............+-.+-+||+.+.+++. .++...+++++... ........ -...........-+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 37888876554433333334555567899999998875 44677788888654 11111110 01112444566778
Q ss_pred CCCEEEEEeCCC-cEEEEECCC--CceEEE--Eec---CCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEE
Q 001336 572 TKNRFLAAGDEF-MIKFWDMDN--VNLLAS--IDA---DGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRT 643 (1097)
Q Consensus 572 ~~~~l~~~~~dg-~i~iwd~~~--~~~~~~--~~~---~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 643 (1097)
||+.|+.|+.+. ...+|.... ...... +.. ......-.-+...|+|++++.+..+. .|||..++ ..++.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n-~v~~~ 204 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN-TVVRT 204 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC-eEEee
Confidence 999999998654 345555422 111111 110 01111223567788999998887654 46687776 34444
Q ss_pred e
Q 001336 644 V 644 (1097)
Q Consensus 644 ~ 644 (1097)
+
T Consensus 205 l 205 (243)
T PF07250_consen 205 L 205 (243)
T ss_pred C
Confidence 3
Done!