Query 001336
Match_columns 1097
No_of_seqs 883 out of 4373
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 22:55:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 4.2E-68 1.4E-72 643.9 82.3 567 312-1063 8-577 (577)
2 2ymu_A WD-40 repeat protein; u 100.0 1.3E-65 4.3E-70 622.2 78.5 562 269-1011 7-577 (577)
3 1nr0_A Actin interacting prote 100.0 9.4E-66 3.2E-70 623.6 74.3 575 318-1065 17-610 (611)
4 1nr0_A Actin interacting prote 100.0 3E-64 1E-68 610.4 74.7 563 290-1013 23-610 (611)
5 3sfz_A APAF-1, apoptotic pepti 100.0 2E-63 6.9E-68 658.4 63.4 615 317-1066 613-1249(1249)
6 1pgu_A Actin interacting prote 100.0 5.3E-59 1.8E-63 569.1 69.4 555 318-1066 17-614 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 2.1E-59 7.1E-64 620.0 60.9 578 274-1013 611-1248(1249)
8 1pgu_A Actin interacting prote 100.0 6.4E-57 2.2E-61 550.7 67.9 555 276-1014 16-614 (615)
9 2oaj_A Protein SNI1; WD40 repe 100.0 1.1E-56 3.9E-61 562.5 71.1 601 312-1025 10-794 (902)
10 2oaj_A Protein SNI1; WD40 repe 100.0 5.6E-55 1.9E-59 547.2 62.4 595 377-1077 13-794 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 1.5E-46 5.2E-51 474.8 64.3 556 313-1066 6-601 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 4.2E-45 1.4E-49 461.7 54.4 465 377-1011 9-502 (814)
13 1vyh_C Platelet-activating fac 100.0 4.1E-40 1.4E-44 377.9 40.8 284 317-634 106-409 (410)
14 3ow8_A WD repeat-containing pr 100.0 4.5E-39 1.5E-43 355.6 43.1 294 311-635 23-320 (321)
15 1got_B GT-beta; complex (GTP-b 100.0 1.6E-38 5.4E-43 355.2 45.8 293 310-633 45-340 (340)
16 2pbi_B Guanine nucleotide-bind 100.0 2.4E-38 8.1E-43 355.4 43.9 295 311-633 55-354 (354)
17 3ow8_A WD repeat-containing pr 100.0 2.3E-38 7.7E-43 350.0 42.9 289 377-769 28-320 (321)
18 1vyh_C Platelet-activating fac 100.0 1.7E-38 5.9E-43 364.4 40.4 286 377-768 104-409 (410)
19 2ynn_A Coatomer subunit beta'; 100.0 6.6E-38 2.2E-42 344.1 43.3 291 312-636 5-302 (304)
20 3frx_A Guanine nucleotide-bind 100.0 7E-38 2.4E-42 346.3 43.8 300 311-637 8-318 (319)
21 4g56_B MGC81050 protein; prote 100.0 8.3E-39 2.8E-43 359.3 35.3 313 704-1068 18-345 (357)
22 1got_B GT-beta; complex (GTP-b 100.0 1.8E-37 6.2E-42 346.6 44.4 286 377-767 51-340 (340)
23 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.2E-37 7.4E-42 346.6 43.1 303 310-638 5-337 (345)
24 4g56_B MGC81050 protein; prote 100.0 3.4E-38 1.1E-42 354.4 36.1 293 317-637 40-344 (357)
25 4gqb_B Methylosome protein 50; 100.0 8.4E-38 2.9E-42 347.8 37.9 297 318-637 29-332 (344)
26 4gqb_B Methylosome protein 50; 100.0 3.7E-38 1.3E-42 350.7 34.9 295 738-1068 29-333 (344)
27 3iz6_a 40S ribosomal protein R 100.0 3.7E-38 1.3E-42 358.0 34.5 302 310-637 56-376 (380)
28 1r5m_A SIR4-interacting protei 100.0 5.8E-37 2E-41 355.2 43.2 308 311-638 37-363 (425)
29 2ynn_A Coatomer subunit beta'; 100.0 1E-36 3.5E-41 334.6 42.2 255 376-644 8-266 (304)
30 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.5E-37 2.6E-41 342.2 41.8 318 377-885 11-341 (345)
31 2pbi_B Guanine nucleotide-bind 100.0 2.1E-36 7.1E-41 339.5 43.3 287 377-767 60-354 (354)
32 4ery_A WD repeat-containing pr 100.0 5.6E-36 1.9E-40 330.7 46.0 292 311-635 14-311 (312)
33 3iz6_a 40S ribosomal protein R 100.0 4.3E-37 1.5E-41 349.2 38.0 318 542-1016 48-377 (380)
34 1r5m_A SIR4-interacting protei 100.0 1.5E-36 5E-41 351.8 42.7 348 378-878 42-424 (425)
35 3frx_A Guanine nucleotide-bind 100.0 9E-36 3.1E-40 329.4 45.0 295 377-769 13-316 (319)
36 1erj_A Transcriptional repress 100.0 3.9E-36 1.3E-40 343.0 43.1 309 311-636 56-389 (393)
37 2pm9_A Protein WEB1, protein t 100.0 1E-37 3.6E-42 360.4 29.7 299 315-637 8-338 (416)
38 2hes_X YDR267CP; beta-propelle 100.0 4.9E-36 1.7E-40 333.3 41.8 298 311-636 5-328 (330)
39 1k32_A Tricorn protease; prote 100.0 5.3E-35 1.8E-39 376.5 55.8 523 318-1016 13-639 (1045)
40 4ery_A WD repeat-containing pr 100.0 2.3E-35 7.8E-40 325.8 43.8 289 377-768 19-310 (312)
41 2xzm_R RACK1; ribosome, transl 100.0 1.6E-35 5.4E-40 331.5 42.2 300 311-637 12-341 (343)
42 4aow_A Guanine nucleotide-bind 100.0 2.3E-35 7.9E-40 330.4 43.2 303 310-638 28-339 (340)
43 1gxr_A ESG1, transducin-like e 100.0 9.7E-36 3.3E-40 332.9 40.1 286 318-637 8-297 (337)
44 2xzm_R RACK1; ribosome, transl 100.0 4.1E-35 1.4E-39 328.1 43.4 293 551-1016 12-342 (343)
45 2hes_X YDR267CP; beta-propelle 100.0 6.8E-35 2.3E-39 324.1 43.6 306 549-1014 3-328 (330)
46 1gxr_A ESG1, transducin-like e 100.0 1.5E-34 5.2E-39 323.2 45.6 316 288-634 12-335 (337)
47 2pm9_A Protein WEB1, protein t 100.0 1.1E-36 3.9E-41 351.7 26.8 338 563-1015 14-415 (416)
48 1k32_A Tricorn protease; prote 100.0 1.2E-33 4.2E-38 363.7 57.6 530 380-1068 13-639 (1045)
49 3gre_A Serine/threonine-protei 100.0 6.6E-36 2.3E-40 347.6 31.6 357 378-918 60-437 (437)
50 3vl1_A 26S proteasome regulato 100.0 1.5E-35 5.2E-40 342.7 34.3 283 321-637 58-366 (420)
51 3vl1_A 26S proteasome regulato 100.0 5.3E-35 1.8E-39 338.1 36.4 345 382-921 57-419 (420)
52 1erj_A Transcriptional repress 100.0 4.6E-34 1.6E-38 325.9 43.4 249 379-644 62-348 (393)
53 3dm0_A Maltose-binding peripla 100.0 3.6E-34 1.2E-38 353.0 43.2 298 312-635 374-692 (694)
54 3ei3_B DNA damage-binding prot 100.0 4.5E-34 1.5E-38 325.7 39.9 296 310-636 63-382 (383)
55 3v7d_B Cell division control p 100.0 1.5E-33 5.2E-38 330.5 45.5 341 377-918 117-460 (464)
56 4aow_A Guanine nucleotide-bind 100.0 5E-33 1.7E-37 311.3 47.0 228 399-637 10-247 (340)
57 3v7d_B Cell division control p 100.0 3.8E-33 1.3E-37 327.1 47.4 346 551-1011 112-460 (464)
58 2j04_B YDR362CP, TAU91; beta p 100.0 1.1E-35 3.8E-40 347.2 24.6 268 328-620 170-458 (524)
59 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6E-33 2E-37 323.2 47.6 320 318-770 117-442 (445)
60 2j04_B YDR362CP, TAU91; beta p 100.0 3.1E-35 1.1E-39 343.4 27.8 350 380-879 132-517 (524)
61 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.4E-33 3.2E-37 321.5 46.7 316 421-921 113-442 (445)
62 3zwl_B Eukaryotic translation 100.0 7.1E-33 2.4E-37 313.9 43.8 286 316-637 29-347 (369)
63 1sq9_A Antiviral protein SKI8; 100.0 1.8E-33 6E-38 322.7 37.8 299 313-637 9-396 (397)
64 3k26_A Polycomb protein EED; W 100.0 1.2E-33 4.1E-38 320.0 34.7 290 318-635 17-365 (366)
65 4e54_B DNA damage-binding prot 100.0 3.8E-34 1.3E-38 331.7 30.7 293 317-637 117-431 (435)
66 3i2n_A WD repeat-containing pr 100.0 2.1E-33 7.2E-38 316.8 35.0 294 313-637 11-354 (357)
67 1k8k_C P40, ARP2/3 complex 41 100.0 2.2E-33 7.5E-38 318.7 33.9 290 318-639 7-364 (372)
68 4a11_B DNA excision repair pro 100.0 4.2E-33 1.4E-37 320.7 36.6 349 541-1067 24-406 (408)
69 3odt_A Protein DOA1; ubiquitin 100.0 1.4E-32 4.6E-37 303.8 39.2 288 310-637 8-297 (313)
70 3gre_A Serine/threonine-protei 100.0 1.7E-33 5.8E-38 327.2 33.0 314 293-633 35-437 (437)
71 4h5i_A Guanine nucleotide-exch 100.0 2.4E-33 8.3E-38 315.6 32.7 304 316-638 11-345 (365)
72 3zwl_B Eukaryotic translation 100.0 5.5E-32 1.9E-36 306.6 43.9 302 376-771 27-347 (369)
73 3ei3_B DNA damage-binding prot 100.0 2.6E-32 8.9E-37 311.1 41.1 308 544-1014 57-382 (383)
74 4e54_B DNA damage-binding prot 100.0 3E-33 1E-37 324.1 31.3 303 553-1018 112-434 (435)
75 1sq9_A Antiviral protein SKI8; 100.0 2.5E-32 8.5E-37 313.1 37.5 256 376-645 11-330 (397)
76 3dm0_A Maltose-binding peripla 100.0 3.5E-32 1.2E-36 335.2 41.4 256 376-645 377-640 (694)
77 1k8k_C P40, ARP2/3 complex 41 100.0 8.5E-33 2.9E-37 313.8 33.1 324 558-1018 6-365 (372)
78 4gga_A P55CDC, cell division c 100.0 2.5E-31 8.5E-36 306.6 43.1 282 321-637 107-396 (420)
79 4h5i_A Guanine nucleotide-exch 100.0 2.5E-32 8.7E-37 307.3 33.9 203 805-1015 132-344 (365)
80 2pm7_B Protein transport prote 100.0 3.9E-32 1.3E-36 296.9 34.5 252 377-636 5-285 (297)
81 4aez_A CDC20, WD repeat-contai 100.0 9.3E-32 3.2E-36 308.2 39.1 286 321-639 95-383 (401)
82 3dwl_C Actin-related protein 2 100.0 3.8E-33 1.3E-37 317.3 27.0 294 738-1064 10-377 (377)
83 3dwl_C Actin-related protein 2 100.0 7.5E-34 2.6E-38 323.2 21.1 286 318-634 10-377 (377)
84 3k26_A Polycomb protein EED; W 100.0 4.6E-32 1.6E-36 307.0 35.1 250 376-637 13-319 (366)
85 4ggc_A P55CDC, cell division c 100.0 1.2E-30 4E-35 289.0 43.4 282 322-637 28-316 (318)
86 3i2n_A WD repeat-containing pr 100.0 9.3E-32 3.2E-36 303.3 34.7 252 376-637 13-292 (357)
87 3odt_A Protein DOA1; ubiquitin 100.0 8.8E-31 3E-35 289.2 41.6 295 593-1022 8-304 (313)
88 2j04_A TAU60, YPL007P, hypothe 100.0 1.6E-32 5.6E-37 309.2 27.3 315 318-759 14-350 (588)
89 2j04_A TAU60, YPL007P, hypothe 100.0 4.1E-33 1.4E-37 314.1 22.3 320 468-1002 13-349 (588)
90 4a11_B DNA excision repair pro 100.0 2E-31 6.8E-36 306.7 36.9 365 449-921 22-405 (408)
91 2pm7_B Protein transport prote 100.0 2.6E-31 9E-36 290.3 34.6 254 805-1074 8-292 (297)
92 3dw8_B Serine/threonine-protei 100.0 2.8E-31 9.6E-36 309.7 35.1 296 316-634 25-444 (447)
93 4gga_A P55CDC, cell division c 100.0 1.5E-30 5E-35 300.1 40.5 294 730-1069 96-398 (420)
94 3bg1_A Protein SEC13 homolog; 100.0 1.5E-31 5E-36 295.1 29.0 251 376-636 8-293 (316)
95 4aez_A CDC20, WD repeat-contai 100.0 2E-30 6.8E-35 297.1 38.0 286 739-1072 93-386 (401)
96 4ggc_A P55CDC, cell division c 100.0 6.3E-30 2.2E-34 283.1 39.6 283 741-1068 27-317 (318)
97 2aq5_A Coronin-1A; WD40 repeat 100.0 6E-31 2.1E-35 301.7 31.4 296 321-637 36-343 (402)
98 3bg1_A Protein SEC13 homolog; 100.0 3E-31 1E-35 292.7 26.8 256 805-1074 12-300 (316)
99 1p22_A F-BOX/WD-repeat protein 100.0 2.6E-30 9E-35 299.6 35.8 272 318-637 132-415 (435)
100 3mmy_A MRNA export factor; mRN 100.0 3E-30 1E-34 292.2 35.0 292 308-634 27-344 (368)
101 1yfq_A Cell cycle arrest prote 100.0 2E-30 6.7E-35 290.5 32.5 280 318-633 10-321 (342)
102 3dw8_B Serine/threonine-protei 100.0 9.7E-30 3.3E-34 296.6 36.8 250 379-638 26-375 (447)
103 3f3f_A Nucleoporin SEH1; struc 100.0 1.3E-29 4.3E-34 284.6 35.5 253 376-637 6-338 (351)
104 3mmy_A MRNA export factor; mRN 100.0 3E-29 1E-33 283.9 36.9 250 376-637 34-305 (368)
105 1yfq_A Cell cycle arrest prote 100.0 3.4E-29 1.2E-33 280.4 35.9 248 377-637 7-283 (342)
106 1p22_A F-BOX/WD-repeat protein 100.0 4.6E-29 1.6E-33 289.2 37.7 235 377-637 129-366 (435)
107 3jrp_A Fusion protein of prote 100.0 4.7E-29 1.6E-33 283.7 35.1 254 376-637 6-288 (379)
108 3f3f_A Nucleoporin SEH1; struc 100.0 1.2E-28 4E-33 276.7 34.6 261 317-600 9-345 (351)
109 3jrp_A Fusion protein of prote 100.0 1.1E-28 3.8E-33 280.6 34.8 259 314-598 5-293 (379)
110 2aq5_A Coronin-1A; WD40 repeat 100.0 6.1E-29 2.1E-33 285.0 31.3 248 382-638 35-301 (402)
111 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.1E-27 3.6E-32 279.0 37.4 300 320-637 5-392 (450)
112 1l0q_A Surface layer protein; 100.0 1.1E-26 3.7E-31 265.4 44.6 278 332-647 2-285 (391)
113 2w18_A PALB2, fancn, partner a 100.0 5.1E-27 1.7E-31 248.2 37.6 293 429-919 42-355 (356)
114 3vu4_A KMHSV2; beta-propeller 100.0 1.9E-27 6.5E-32 266.7 35.6 240 377-637 15-272 (355)
115 3bws_A Protein LP49; two-domai 100.0 1.1E-26 3.7E-31 269.5 42.0 235 382-626 123-365 (433)
116 1l0q_A Surface layer protein; 100.0 4.2E-26 1.4E-30 260.6 45.3 328 442-957 4-364 (391)
117 2xyi_A Probable histone-bindin 100.0 1.3E-27 4.6E-32 276.0 33.1 267 311-593 120-411 (430)
118 3bws_A Protein LP49; two-domai 100.0 9.1E-27 3.1E-31 270.1 39.5 295 310-635 113-431 (433)
119 3vu4_A KMHSV2; beta-propeller 100.0 1.6E-27 5.5E-32 267.2 31.8 281 313-637 12-337 (355)
120 2w18_A PALB2, fancn, partner a 100.0 6E-27 2E-31 247.6 33.7 221 805-1065 110-356 (356)
121 2xyi_A Probable histone-bindin 100.0 6.9E-27 2.4E-31 270.0 36.4 252 377-637 124-411 (430)
122 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.2E-26 4.2E-31 269.9 37.7 242 382-634 5-337 (450)
123 3lrv_A PRE-mRNA-splicing facto 100.0 2E-27 6.8E-32 265.7 29.4 280 433-921 43-333 (343)
124 3jro_A Fusion protein of prote 100.0 1.3E-27 4.4E-32 295.8 30.0 254 376-637 4-286 (753)
125 3jro_A Fusion protein of prote 100.0 2.4E-27 8.1E-32 293.4 31.5 258 805-1077 8-295 (753)
126 4gq1_A NUP37; propeller, trans 100.0 2.5E-27 8.6E-32 269.8 27.7 307 316-634 12-387 (393)
127 3lrv_A PRE-mRNA-splicing facto 100.0 7E-27 2.4E-31 261.3 28.6 268 327-637 44-334 (343)
128 4gq1_A NUP37; propeller, trans 100.0 5E-27 1.7E-31 267.3 24.6 299 748-1065 27-388 (393)
129 1nir_A Nitrite reductase; hemo 99.9 8.2E-25 2.8E-29 257.9 39.1 340 568-1023 144-523 (543)
130 1nir_A Nitrite reductase; hemo 99.9 5E-25 1.7E-29 259.7 37.2 341 522-978 145-522 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.8E-24 1.3E-28 244.8 32.7 284 320-637 63-388 (415)
132 2ecf_A Dipeptidyl peptidase IV 99.9 1.7E-23 5.8E-28 260.6 35.2 304 319-636 36-413 (741)
133 2ecf_A Dipeptidyl peptidase IV 99.9 2E-22 6.8E-27 250.9 38.9 245 381-635 36-366 (741)
134 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.4E-22 8.1E-27 229.9 33.9 280 300-618 95-410 (415)
135 1xfd_A DIP, dipeptidyl aminope 99.9 3.5E-23 1.2E-27 257.0 26.0 287 321-636 18-393 (723)
136 3u4y_A Uncharacterized protein 99.9 4.3E-21 1.5E-25 213.3 36.3 280 325-637 3-305 (331)
137 2z3z_A Dipeptidyl aminopeptida 99.9 4E-21 1.4E-25 237.6 38.0 238 383-635 27-341 (706)
138 1xfd_A DIP, dipeptidyl aminope 99.9 6.4E-22 2.2E-26 245.7 28.5 273 741-1053 62-427 (723)
139 2z3z_A Dipeptidyl aminopeptida 99.9 4.7E-21 1.6E-25 237.0 36.1 244 807-1068 121-437 (706)
140 3vgz_A Uncharacterized protein 99.9 1.7E-20 6E-25 210.5 36.3 279 313-627 34-335 (353)
141 3u4y_A Uncharacterized protein 99.9 1.8E-20 6.3E-25 208.2 32.8 289 746-1072 4-310 (331)
142 1ri6_A Putative isomerase YBHE 99.9 6E-20 2.1E-24 205.1 36.4 274 331-635 4-307 (343)
143 1ri6_A Putative isomerase YBHE 99.9 1.4E-20 5E-25 210.1 30.8 280 705-1017 8-313 (343)
144 2ojh_A Uncharacterized protein 99.9 1.3E-20 4.3E-25 205.5 26.1 257 337-627 17-293 (297)
145 3vgz_A Uncharacterized protein 99.9 2.2E-19 7.6E-24 201.4 35.6 272 739-1056 40-334 (353)
146 1pby_B Quinohemoprotein amine 99.9 1.3E-19 4.6E-24 201.6 30.8 278 334-646 3-319 (337)
147 1pby_B Quinohemoprotein amine 99.9 3.5E-19 1.2E-23 198.3 32.8 303 485-891 2-322 (337)
148 3hfq_A Uncharacterized protein 99.9 3.6E-19 1.2E-23 199.1 31.8 249 805-1069 38-320 (347)
149 1z68_A Fibroblast activation p 99.8 6.9E-20 2.4E-24 226.9 26.3 329 566-1022 20-451 (719)
150 2ojh_A Uncharacterized protein 99.8 1.6E-19 5.6E-24 196.6 26.0 254 538-912 20-293 (297)
151 3o4h_A Acylamino-acid-releasin 99.8 6.1E-20 2.1E-24 221.1 24.5 272 319-634 21-313 (582)
152 1z68_A Fibroblast activation p 99.8 1.1E-19 3.8E-24 225.1 27.0 286 742-1068 62-445 (719)
153 2oit_A Nucleoporin 214KDA; NH2 99.8 1.7E-18 5.8E-23 198.4 33.7 314 739-1066 36-405 (434)
154 2oit_A Nucleoporin 214KDA; NH2 99.8 1.3E-18 4.4E-23 199.3 32.3 258 319-591 36-332 (434)
155 3o4h_A Acylamino-acid-releasin 99.8 6.5E-19 2.2E-23 212.1 28.5 237 380-634 20-274 (582)
156 3hfq_A Uncharacterized protein 99.8 2.6E-17 9E-22 183.9 38.5 245 380-635 38-316 (347)
157 4a5s_A Dipeptidyl peptidase 4 99.8 4.4E-18 1.5E-22 210.5 32.0 274 321-637 18-354 (740)
158 3scy_A Hypothetical bacterial 99.8 8E-17 2.8E-21 181.1 38.2 178 806-992 154-360 (361)
159 3pe7_A Oligogalacturonate lyas 99.8 1.8E-17 6.3E-22 188.5 33.3 298 311-634 21-380 (388)
160 4a5s_A Dipeptidyl peptidase 4 99.8 3E-17 1E-21 203.0 37.7 330 563-1021 18-456 (740)
161 1jmx_B Amine dehydrogenase; ox 99.8 1.2E-17 4E-22 186.9 30.6 284 324-646 4-334 (349)
162 3scy_A Hypothetical bacterial 99.8 1.3E-16 4.6E-21 179.2 37.1 271 334-635 15-336 (361)
163 3pe7_A Oligogalacturonate lyas 99.8 7.7E-18 2.6E-22 191.6 26.4 254 377-637 26-330 (388)
164 1jmx_B Amine dehydrogenase; ox 99.8 1E-17 3.5E-22 187.4 26.6 241 811-1073 4-332 (349)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.2E-16 3.9E-21 179.8 31.2 248 380-637 38-342 (365)
166 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.8E-16 1.6E-20 174.7 32.7 271 541-922 15-342 (365)
167 2oiz_A Aromatic amine dehydrog 99.7 8.8E-16 3E-20 171.4 32.3 312 483-903 14-360 (361)
168 2oiz_A Aromatic amine dehydrog 99.7 1.4E-15 4.7E-20 169.8 33.5 219 808-1045 109-358 (361)
169 3c5m_A Oligogalacturonate lyas 99.7 2.5E-16 8.5E-21 179.6 28.0 282 322-634 38-380 (396)
170 3c5m_A Oligogalacturonate lyas 99.7 3.6E-16 1.2E-20 178.3 24.7 307 517-976 38-390 (396)
171 2gop_A Trilobed protease; beta 99.7 5.9E-15 2E-19 164.7 30.5 263 320-635 15-330 (347)
172 3fvz_A Peptidyl-glycine alpha- 99.7 5.1E-15 1.8E-19 163.4 27.6 252 806-1068 23-324 (329)
173 1q7f_A NHL, brain tumor CG1071 99.7 2.7E-14 9.1E-19 154.4 31.2 242 805-1066 28-280 (286)
174 3azo_A Aminopeptidase; POP fam 99.7 5.2E-15 1.8E-19 181.2 27.3 252 375-635 17-322 (662)
175 1qks_A Cytochrome CD1 nitrite 99.7 7.3E-13 2.5E-17 155.1 43.8 275 332-637 167-478 (567)
176 4a2l_A BT_4663, two-component 99.7 1.1E-10 3.9E-15 145.2 65.8 533 319-1012 87-657 (795)
177 3azo_A Aminopeptidase; POP fam 99.7 1E-14 3.5E-19 178.6 28.5 285 318-637 22-370 (662)
178 1qks_A Cytochrome CD1 nitrite 99.7 8.6E-13 2.9E-17 154.5 42.9 189 441-637 168-374 (567)
179 4a2l_A BT_4663, two-component 99.6 6.2E-10 2.1E-14 138.6 70.6 592 319-1067 42-660 (795)
180 1q7f_A NHL, brain tumor CG1071 99.6 2.5E-13 8.7E-18 146.7 33.3 246 378-637 26-281 (286)
181 3fvz_A Peptidyl-glycine alpha- 99.6 2E-13 6.8E-18 150.6 32.7 247 320-592 24-322 (329)
182 2xdw_A Prolyl endopeptidase; a 99.6 1.3E-13 4.4E-18 169.6 34.5 250 378-638 121-416 (710)
183 2gop_A Trilobed protease; beta 99.6 1E-13 3.5E-18 154.6 27.7 220 808-1065 60-330 (347)
184 2dg1_A DRP35, lactonase; beta 99.6 2.6E-13 9E-18 150.3 29.8 271 320-627 6-301 (333)
185 3v9f_A Two-component system se 99.6 5.3E-09 1.8E-13 129.9 67.9 540 320-1014 66-656 (781)
186 3v9f_A Two-component system se 99.6 1.7E-08 5.8E-13 125.3 71.9 595 319-1068 18-658 (781)
187 2xdw_A Prolyl endopeptidase; a 99.6 3.6E-13 1.2E-17 165.7 29.2 246 321-594 126-416 (710)
188 2bkl_A Prolyl endopeptidase; m 99.6 2.5E-13 8.5E-18 166.5 26.5 249 378-638 117-399 (695)
189 2z2n_A Virginiamycin B lyase; 99.6 2.9E-11 1E-15 131.3 39.8 281 738-1068 13-297 (299)
190 3e5z_A Putative gluconolactona 99.5 1.5E-12 5.1E-17 141.4 28.7 241 318-595 26-289 (296)
191 2z2n_A Virginiamycin B lyase; 99.5 4E-11 1.4E-15 130.1 40.1 282 318-637 13-296 (299)
192 2dg1_A DRP35, lactonase; beta 99.5 9.9E-13 3.4E-17 145.6 27.6 241 382-635 6-262 (333)
193 3dsm_A Uncharacterized protein 99.5 4.4E-12 1.5E-16 139.5 31.7 278 340-645 15-309 (328)
194 2mad_H Methylamine dehydrogena 99.5 3.1E-11 1E-15 134.4 38.5 203 810-1021 128-357 (373)
195 3e5z_A Putative gluconolactona 99.5 1.9E-12 6.6E-17 140.5 28.1 237 377-636 23-286 (296)
196 2bkl_A Prolyl endopeptidase; m 99.5 3E-13 1E-17 165.7 24.0 243 805-1069 119-400 (695)
197 3dsm_A Uncharacterized protein 99.5 2.8E-12 9.7E-17 141.0 27.8 242 807-1072 44-307 (328)
198 3no2_A Uncharacterized protein 99.5 8.3E-12 2.8E-16 132.9 29.7 243 334-612 7-272 (276)
199 1yr2_A Prolyl oligopeptidase; 99.5 2.4E-12 8.2E-17 158.9 28.4 247 378-637 159-442 (741)
200 3sjl_D Methylamine dehydrogena 99.5 1.4E-11 4.8E-16 134.5 31.0 248 745-1024 83-373 (386)
201 1rwi_B Serine/threonine-protei 99.5 5.5E-12 1.9E-16 134.8 26.7 240 808-1069 25-267 (270)
202 3no2_A Uncharacterized protein 99.5 6.7E-12 2.3E-16 133.6 26.3 250 816-1080 3-266 (276)
203 1rwi_B Serine/threonine-protei 99.5 5.5E-12 1.9E-16 134.8 25.8 241 321-595 25-267 (270)
204 2qc5_A Streptogramin B lactona 99.5 2.6E-10 8.9E-15 123.7 39.0 278 318-634 18-298 (300)
205 2mad_H Methylamine dehydrogena 99.5 1.6E-10 5.6E-15 128.6 37.8 278 327-643 28-356 (373)
206 3sjl_D Methylamine dehydrogena 99.5 2.8E-11 9.4E-16 132.2 29.9 281 308-616 67-384 (386)
207 3c75_H MADH, methylamine dehyd 99.4 4E-11 1.4E-15 133.7 29.5 205 810-1021 180-409 (426)
208 2qc5_A Streptogramin B lactona 99.4 1.1E-09 3.7E-14 118.9 38.9 278 738-1065 18-299 (300)
209 1yr2_A Prolyl oligopeptidase; 99.4 1.6E-11 5.4E-16 151.6 25.0 244 321-594 164-443 (741)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.8E-10 6.3E-15 126.0 28.9 242 381-636 17-299 (314)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.6E-10 5.5E-15 126.5 27.4 245 740-1014 18-299 (314)
212 3c75_H MADH, methylamine dehyd 99.3 2.5E-10 8.6E-15 127.2 26.5 279 329-644 82-409 (426)
213 3g4e_A Regucalcin; six bladed 99.3 1.2E-09 4.3E-14 118.0 28.6 229 740-1003 13-261 (297)
214 3iuj_A Prolyl endopeptidase; h 99.3 4.7E-10 1.6E-14 136.9 27.9 249 320-596 129-409 (693)
215 3g4e_A Regucalcin; six bladed 99.3 2.1E-09 7.2E-14 116.2 29.3 229 381-626 12-262 (297)
216 2qe8_A Uncharacterized protein 99.3 2.6E-10 8.8E-15 126.3 22.4 274 320-630 17-315 (343)
217 3hrp_A Uncharacterized protein 99.3 1.5E-09 5.1E-14 122.7 29.0 240 320-590 131-408 (409)
218 3hrp_A Uncharacterized protein 99.2 3.5E-09 1.2E-13 119.6 30.7 239 382-634 131-408 (409)
219 3iuj_A Prolyl endopeptidase; h 99.2 4.2E-10 1.4E-14 137.4 24.7 245 378-637 125-406 (693)
220 3dr2_A Exported gluconolactona 99.2 1.6E-09 5.3E-14 117.8 26.0 230 318-584 43-299 (305)
221 1mda_H Methylamine dehydrogena 99.2 3.7E-10 1.3E-14 123.9 21.0 200 810-1024 127-356 (368)
222 4a0p_A LRP6, LRP-6, low-densit 99.2 2.3E-05 7.9E-10 92.8 66.4 532 395-1021 8-556 (628)
223 1xip_A Nucleoporin NUP159; bet 99.2 2E-10 6.8E-15 126.1 17.4 173 807-1000 38-230 (388)
224 2qe8_A Uncharacterized protein 99.2 2.5E-10 8.7E-15 126.3 17.8 271 740-1060 17-315 (343)
225 2ghs_A AGR_C_1268P; regucalcin 99.2 2E-08 6.9E-13 110.0 31.8 225 383-626 50-292 (326)
226 1xip_A Nucleoporin NUP159; bet 99.2 7.6E-10 2.6E-14 121.5 19.8 183 321-533 39-232 (388)
227 3s94_A LRP-6, low-density lipo 99.2 1.9E-05 6.4E-10 93.5 58.8 526 402-1015 17-552 (619)
228 2ghs_A AGR_C_1268P; regucalcin 99.2 2.1E-08 7.1E-13 109.9 31.1 223 321-580 50-290 (326)
229 1kb0_A Quinohemoprotein alcoho 99.1 2.1E-08 7.1E-13 120.9 32.4 192 442-638 79-348 (677)
230 1kb0_A Quinohemoprotein alcoho 99.1 8.4E-09 2.9E-13 124.4 28.7 203 851-1066 246-567 (677)
231 1yiq_A Quinohemoprotein alcoho 99.1 9.4E-09 3.2E-13 124.2 28.4 327 485-907 71-534 (689)
232 3dr2_A Exported gluconolactona 99.1 1.6E-08 5.5E-13 109.7 27.3 233 379-630 42-301 (305)
233 1mda_H Methylamine dehydrogena 99.1 2.8E-09 9.7E-14 116.8 20.8 269 332-645 32-354 (368)
234 1yiq_A Quinohemoprotein alcoho 99.1 1.4E-08 4.9E-13 122.6 28.9 169 852-1024 239-515 (689)
235 2ece_A 462AA long hypothetical 99.1 2E-08 7E-13 109.8 25.8 238 749-1002 93-399 (462)
236 3q7m_A Lipoprotein YFGL, BAMB; 99.1 3.2E-07 1.1E-11 102.9 36.9 149 442-601 55-216 (376)
237 3q7m_A Lipoprotein YFGL, BAMB; 99.0 3E-07 1E-11 103.2 33.3 224 392-637 52-297 (376)
238 2ece_A 462AA long hypothetical 99.0 1E-07 3.4E-12 104.4 26.3 266 299-580 44-399 (462)
239 3hxj_A Pyrrolo-quinoline quino 98.9 3.9E-08 1.3E-12 108.2 21.8 180 432-637 25-204 (330)
240 1fwx_A Nitrous oxide reductase 98.9 3.3E-08 1.1E-12 112.2 20.7 244 811-1071 89-436 (595)
241 3s94_A LRP-6, low-density lipo 98.9 0.00033 1.1E-08 82.9 61.1 455 380-923 38-512 (619)
242 2hz6_A Endoplasmic reticulum t 98.9 2E-09 7E-14 119.9 7.6 190 392-601 8-201 (369)
243 3hxj_A Pyrrolo-quinoline quino 98.9 1.9E-07 6.3E-12 102.7 23.3 266 319-636 59-324 (330)
244 1fwx_A Nitrous oxide reductase 98.9 6E-08 2.1E-12 110.1 19.1 272 524-923 99-433 (595)
245 2hz6_A Endoplasmic reticulum t 98.8 7.8E-10 2.7E-14 123.3 2.9 186 817-1022 8-200 (369)
246 3ei3_A DNA damage-binding prot 98.8 0.0015 5E-08 82.7 66.0 287 320-635 327-635 (1158)
247 1npe_A Nidogen, entactin; glyc 98.8 1.1E-05 3.7E-10 85.3 33.4 224 382-618 36-263 (267)
248 1kv9_A Type II quinohemoprotei 98.8 3.4E-06 1.2E-10 101.5 32.5 169 852-1024 234-498 (668)
249 2iwa_A Glutamine cyclotransfer 98.7 1E-06 3.5E-11 90.9 22.2 216 838-1068 10-239 (266)
250 4a0p_A LRP6, LRP-6, low-densit 98.7 0.0013 4.6E-08 77.7 67.3 528 333-978 8-557 (628)
251 1kv9_A Type II quinohemoprotei 98.7 1.8E-06 6.1E-11 104.0 27.7 191 442-638 68-335 (668)
252 2iwa_A Glutamine cyclotransfer 98.7 2E-06 6.7E-11 88.7 23.5 201 807-1015 21-238 (266)
253 1w6s_A Methanol dehydrogenase 98.7 1.8E-05 6.2E-10 92.8 33.7 168 852-1024 245-513 (599)
254 1npe_A Nidogen, entactin; glyc 98.7 5.2E-05 1.8E-09 80.0 33.4 241 394-645 2-246 (267)
255 3ei3_A DNA damage-binding prot 98.6 0.0044 1.5E-07 78.4 58.6 452 382-921 514-999 (1158)
256 2ad6_A Methanol dehydrogenase 98.6 2E-05 6.9E-10 92.6 32.2 198 811-1024 239-504 (571)
257 3nol_A Glutamine cyclotransfer 98.6 2.4E-06 8.3E-11 86.7 19.8 185 807-1003 43-244 (262)
258 3ott_A Two-component system se 98.6 0.0046 1.6E-07 76.0 60.4 526 319-1013 62-625 (758)
259 3nol_A Glutamine cyclotransfer 98.6 4.9E-06 1.7E-10 84.5 20.6 210 838-1064 32-254 (262)
260 3ott_A Two-component system se 98.6 0.0053 1.8E-07 75.4 74.9 574 319-1068 21-628 (758)
261 3nok_A Glutaminyl cyclase; bet 98.5 3E-06 1E-10 85.9 18.6 205 838-1060 44-260 (268)
262 3nok_A Glutaminyl cyclase; bet 98.5 6.4E-06 2.2E-10 83.5 20.9 185 806-1002 54-253 (268)
263 2ad6_A Methanol dehydrogenase 98.5 1.9E-05 6.4E-10 93.0 28.3 109 485-601 63-194 (571)
264 2fp8_A Strictosidine synthase; 98.5 2.2E-05 7.7E-10 85.5 27.2 238 808-1069 20-316 (322)
265 3mbr_X Glutamine cyclotransfer 98.5 2.8E-05 9.5E-10 78.3 24.6 211 838-1065 10-234 (243)
266 2xe4_A Oligopeptidase B; hydro 98.5 1.1E-05 3.9E-10 98.7 26.4 248 321-595 175-461 (751)
267 1w6s_A Methanol dehydrogenase 98.5 4.8E-05 1.6E-09 89.2 30.3 111 485-601 63-200 (599)
268 1flg_A Protein (quinoprotein e 98.5 0.00023 8E-09 83.6 35.8 379 442-906 70-544 (582)
269 2fp8_A Strictosidine synthase; 98.5 4.7E-05 1.6E-09 82.9 27.2 252 741-1014 20-313 (322)
270 1k3i_A Galactose oxidase precu 98.4 1.6E-05 5.3E-10 96.1 25.0 280 323-625 189-530 (656)
271 2p4o_A Hypothetical protein; p 98.4 0.00023 8E-09 76.6 31.6 229 382-627 32-279 (306)
272 1flg_A Protein (quinoprotein e 98.4 0.00099 3.4E-08 78.3 39.1 205 393-602 68-365 (582)
273 3mbr_X Glutamine cyclotransfer 98.4 3.7E-05 1.3E-09 77.4 22.9 188 806-1003 20-223 (243)
274 2p4o_A Hypothetical protein; p 98.4 0.00018 6.2E-09 77.5 30.3 228 740-1005 32-279 (306)
275 1ijq_A LDL receptor, low-densi 98.3 0.00079 2.7E-08 72.6 32.9 207 806-1022 29-246 (316)
276 2xbg_A YCF48-like protein; pho 98.3 0.0017 5.8E-08 70.4 35.0 279 739-1064 35-320 (327)
277 3v64_C Agrin; beta propeller, 98.3 0.0023 7.7E-08 70.1 35.6 248 320-600 34-283 (349)
278 3v64_C Agrin; beta propeller, 98.3 0.00084 2.9E-08 73.5 32.1 205 807-1022 73-283 (349)
279 2xbg_A YCF48-like protein; pho 98.3 0.0032 1.1E-07 68.2 36.1 282 317-633 33-319 (327)
280 1ijq_A LDL receptor, low-densi 98.3 0.0022 7.6E-08 69.1 33.9 232 395-637 3-239 (316)
281 3v65_B Low-density lipoprotein 98.2 0.0007 2.4E-08 75.4 30.3 205 807-1022 116-326 (386)
282 3v65_B Low-density lipoprotein 98.2 0.0018 6.3E-08 71.9 32.7 246 322-600 79-326 (386)
283 3tc9_A Hypothetical hydrolase; 98.2 0.00039 1.3E-08 78.5 27.4 246 808-1065 138-429 (430)
284 3qqz_A Putative uncharacterize 98.2 0.001 3.4E-08 68.1 27.6 191 319-532 26-241 (255)
285 4hw6_A Hypothetical protein, I 98.2 0.00032 1.1E-08 79.3 26.1 248 808-1065 140-432 (433)
286 1k3i_A Galactose oxidase precu 98.2 0.0001 3.4E-09 89.0 23.2 235 386-626 190-476 (656)
287 3p5b_L Low density lipoprotein 98.2 0.0023 7.9E-08 71.4 32.5 208 806-1022 111-328 (400)
288 2xe4_A Oligopeptidase B; hydro 98.1 0.00033 1.1E-08 85.7 27.2 245 378-637 169-459 (751)
289 3p5b_L Low density lipoprotein 98.1 0.0058 2E-07 68.2 34.3 232 395-637 85-321 (400)
290 3qqz_A Putative uncharacterize 98.1 0.0011 3.6E-08 67.9 25.5 203 805-1012 25-251 (255)
291 3amr_A 3-phytase; beta-propell 98.0 0.0014 4.8E-08 69.5 24.8 197 817-1022 39-272 (355)
292 3tc9_A Hypothetical hydrolase; 98.0 0.0014 4.7E-08 74.0 26.5 241 382-635 137-429 (430)
293 3m0c_C LDL receptor, low-densi 97.9 0.01 3.6E-07 71.7 33.6 207 806-1021 423-639 (791)
294 4hw6_A Hypothetical protein, I 97.9 0.0036 1.2E-07 70.5 27.8 240 382-634 139-431 (433)
295 3sov_A LRP-6, low-density lipo 97.9 0.0052 1.8E-07 66.0 27.2 204 808-1022 36-246 (318)
296 3sov_A LRP-6, low-density lipo 97.8 0.023 8E-07 60.8 31.3 208 383-600 36-246 (318)
297 3m0c_C LDL receptor, low-densi 97.8 0.024 8.2E-07 68.6 33.5 232 395-637 397-633 (791)
298 1n7d_A LDL receptor, low-densi 97.8 0.00017 5.7E-09 86.9 14.6 208 807-1023 406-623 (699)
299 3kya_A Putative phosphatase; s 97.7 0.009 3.1E-07 67.3 26.8 253 740-1017 139-478 (496)
300 3kya_A Putative phosphatase; s 97.7 0.024 8.2E-07 63.8 29.5 245 383-637 140-476 (496)
301 3amr_A 3-phytase; beta-propell 97.7 0.019 6.5E-07 60.9 26.6 194 442-644 42-271 (355)
302 2xzh_A Clathrin heavy chain 1; 97.7 0.076 2.6E-06 55.0 32.5 261 539-923 48-334 (365)
303 2p9w_A MAL S 1 allergenic prot 97.5 0.021 7.3E-07 59.9 23.6 203 807-1014 13-265 (334)
304 2xzh_A Clathrin heavy chain 1; 97.5 0.14 4.7E-06 53.1 31.2 232 811-1067 71-333 (365)
305 1n7d_A LDL receptor, low-densi 97.4 0.0011 3.7E-08 79.9 14.8 232 402-644 385-621 (699)
306 1bpo_A Protein (clathrin); cla 97.4 0.24 8.3E-06 53.5 35.2 261 539-923 47-333 (494)
307 2ism_A Putative oxidoreductase 97.3 0.068 2.3E-06 58.2 26.8 196 808-1015 32-298 (352)
308 3a9g_A Putative uncharacterize 97.3 0.069 2.4E-06 58.1 26.4 228 807-1054 29-330 (354)
309 2ism_A Putative oxidoreductase 97.3 0.041 1.4E-06 60.0 24.7 230 382-624 31-333 (352)
310 2p9w_A MAL S 1 allergenic prot 97.2 0.066 2.2E-06 56.2 23.1 163 321-503 14-215 (334)
311 3a9g_A Putative uncharacterize 97.1 0.23 7.9E-06 53.9 28.3 233 382-624 29-330 (354)
312 3ii7_A Kelch-like protein 7; p 97.1 0.072 2.5E-06 56.8 24.0 234 332-596 12-276 (306)
313 2vpj_A Kelch-like protein 12; 97.0 0.029 9.8E-07 59.8 19.8 194 392-594 62-280 (301)
314 2g8s_A Glucose/sorbosone dehyd 97.0 0.12 4E-06 56.4 24.6 238 808-1064 19-350 (353)
315 2xn4_A Kelch-like protein 2; s 97.0 0.089 3E-06 55.9 23.3 232 818-1076 16-284 (302)
316 2vpj_A Kelch-like protein 12; 97.0 0.042 1.4E-06 58.5 20.5 233 392-637 14-279 (301)
317 2xn4_A Kelch-like protein 2; s 97.0 0.042 1.4E-06 58.5 20.3 230 393-637 16-277 (302)
318 3ii7_A Kelch-like protein 7; p 96.9 0.06 2.1E-06 57.4 21.4 232 394-637 13-273 (306)
319 1bpo_A Protein (clathrin); cla 96.9 0.61 2.1E-05 50.4 34.0 261 342-637 48-332 (494)
320 3sre_A PON1, serum paraoxonase 96.9 0.092 3.1E-06 56.5 21.9 185 808-1004 51-287 (355)
321 3pbp_A Nucleoporin NUP82; beta 96.9 0.028 9.6E-07 60.7 17.3 152 811-965 25-207 (452)
322 4asc_A Kelch repeat and BTB do 96.8 0.19 6.6E-06 53.7 24.3 230 825-1079 11-288 (315)
323 2g8s_A Glucose/sorbosone dehyd 96.7 0.55 1.9E-05 50.9 27.2 235 382-623 18-340 (353)
324 3das_A Putative oxidoreductase 96.7 0.81 2.8E-05 48.9 27.4 231 807-1054 32-326 (347)
325 3sre_A PON1, serum paraoxonase 96.6 0.97 3.3E-05 48.5 29.1 207 383-600 51-308 (355)
326 1zgk_A Kelch-like ECH-associat 96.5 0.14 4.7E-06 54.7 20.3 237 816-1078 23-297 (308)
327 4asc_A Kelch repeat and BTB do 96.5 0.15 5E-06 54.6 20.4 227 396-637 8-278 (315)
328 3das_A Putative oxidoreductase 96.5 1.2 4.1E-05 47.6 32.3 99 809-909 204-326 (347)
329 1zgk_A Kelch-like ECH-associat 96.4 0.13 4.5E-06 54.8 19.3 231 391-637 23-288 (308)
330 3pbp_A Nucleoporin NUP82; beta 96.3 0.17 5.9E-06 54.7 18.7 149 859-1009 31-207 (452)
331 1cru_A Protein (soluble quinop 96.3 1 3.5E-05 50.6 26.3 104 807-910 27-163 (454)
332 2woz_A Kelch repeat and BTB do 96.2 0.34 1.2E-05 51.8 21.0 154 388-551 52-233 (318)
333 2woz_A Kelch repeat and BTB do 95.9 0.4 1.4E-05 51.2 20.0 230 395-637 18-288 (318)
334 2uvk_A YJHT; unknown function, 95.9 0.31 1E-05 53.2 19.3 241 817-1077 19-351 (357)
335 1xi4_A Clathrin heavy chain; a 95.9 0.35 1.2E-05 60.4 20.7 234 811-1067 70-332 (1630)
336 3sbq_A Nitrous-oxide reductase 95.7 0.61 2.1E-05 52.1 19.8 114 807-923 323-480 (638)
337 1tl2_A L10, protein (tachylect 95.6 0.13 4.5E-06 50.1 12.6 148 808-965 42-205 (236)
338 3s25_A Hypothetical 7-bladed b 95.6 1.6 5.6E-05 45.8 22.4 182 324-551 57-257 (302)
339 1xi4_A Clathrin heavy chain; a 95.5 0.77 2.6E-05 57.5 21.8 89 539-637 47-135 (1630)
340 1tl2_A L10, protein (tachylect 95.5 0.067 2.3E-06 52.1 10.2 147 848-1006 41-202 (236)
341 2be1_A Serine/threonine-protei 95.5 0.15 5.2E-06 54.3 14.0 199 861-1071 11-236 (339)
342 2uvk_A YJHT; unknown function, 95.4 0.73 2.5E-05 50.1 20.0 147 450-602 168-352 (357)
343 1cru_A Protein (soluble quinop 94.4 4.3 0.00015 45.4 23.0 110 891-1003 27-163 (454)
344 2wg3_C Hedgehog-interacting pr 93.2 13 0.00044 41.6 27.2 110 382-493 14-159 (463)
345 3qhy_B Beta-lactamase inhibito 93.1 3.4 0.00012 42.8 17.9 223 808-1067 25-247 (282)
346 2be1_A Serine/threonine-protei 92.7 0.47 1.6E-05 50.4 10.6 191 442-639 12-234 (339)
347 2zwa_A Leucine carboxyl methyl 91.6 6.8 0.00023 46.7 20.2 199 816-1018 396-639 (695)
348 3s25_A Hypothetical 7-bladed b 89.9 21 0.0007 37.3 30.2 179 387-594 58-257 (302)
349 2wg3_C Hedgehog-interacting pr 89.7 29 0.00099 38.7 28.6 54 563-616 15-79 (463)
350 2zwa_A Leucine carboxyl methyl 89.7 10 0.00035 45.2 19.3 196 436-637 396-636 (695)
351 3qhy_B Beta-lactamase inhibito 89.6 19 0.00064 37.1 19.0 183 808-1015 64-247 (282)
352 3b7f_A Glycosyl hydrolase, BNR 88.0 33 0.0011 37.3 25.6 261 806-1076 54-380 (394)
353 3q6k_A 43.2 kDa salivary prote 88.0 17 0.00059 39.0 17.5 173 828-1002 124-342 (381)
354 4hvt_A Ritya.17583.B, post-pro 87.8 50 0.0017 39.1 26.0 245 324-594 133-431 (711)
355 4hvt_A Ritya.17583.B, post-pro 87.6 27 0.00092 41.4 20.7 243 385-635 132-429 (711)
356 3sbq_A Nitrous-oxide reductase 87.5 42 0.0014 37.8 23.5 233 396-636 73-408 (638)
357 2nxp_A Transcription initiatio 86.5 0.9 3.1E-05 42.0 5.6 78 35-112 52-136 (156)
358 2j4b_A TAF5, transcription ini 85.6 0.51 1.7E-05 42.5 3.3 77 35-112 33-116 (138)
359 3no0_A DNA gyrase subunit A; D 85.1 36 0.0012 34.8 21.1 205 849-1066 25-246 (276)
360 3q6k_A 43.2 kDa salivary prote 84.6 47 0.0016 35.6 21.9 165 451-621 124-339 (381)
361 2j49_A Transcription initiatio 79.7 0.59 2E-05 42.6 1.4 77 35-112 35-118 (148)
362 3uc1_A DNA gyrase subunit A; D 76.2 80 0.0027 33.1 25.0 157 806-969 94-278 (327)
363 3b7f_A Glycosyl hydrolase, BNR 69.3 1.3E+02 0.0044 32.4 30.3 237 381-630 54-366 (394)
364 4gq2_M Nucleoporin NUP120; bet 69.0 27 0.00092 43.2 12.8 41 983-1023 235-275 (950)
365 3kci_A Probable E3 ubiquitin-p 65.9 1.5E+02 0.0051 31.9 24.0 203 849-1065 106-344 (389)
366 3no0_A DNA gyrase subunit A; D 65.2 1.2E+02 0.0042 30.7 22.6 201 808-1019 25-251 (276)
367 3uc1_A DNA gyrase subunit A; D 64.7 1.4E+02 0.0048 31.2 26.3 168 847-1020 94-285 (327)
368 2zux_A YESW protein; beta-prop 64.3 1.9E+02 0.0065 32.5 26.4 179 425-616 177-424 (591)
369 1wp5_A Topoisomerase IV; broke 59.4 1.7E+02 0.0059 30.4 25.6 239 749-1016 3-279 (323)
370 1suu_A DNA gyrase subunit A; t 59.0 1.7E+02 0.0058 30.3 27.8 239 816-1066 6-283 (312)
371 2wpv_A GET4, UPF0363 protein Y 57.0 15 0.00052 38.2 6.2 108 2-148 18-126 (312)
372 2zuy_A YESX protein; beta-prop 57.0 2.6E+02 0.0087 31.7 25.6 68 549-616 355-428 (620)
373 4gq2_M Nucleoporin NUP120; bet 54.0 1.4E+02 0.0048 36.8 15.4 36 892-927 237-272 (950)
374 3zwu_A Alkaline phosphatase PH 48.1 44 0.0015 38.4 8.7 60 942-1002 477-549 (592)
375 3lpz_A GET4 (YOR164C homolog); 46.5 31 0.001 36.1 6.5 23 1-23 16-41 (336)
376 4a9v_A PHOX; hydrolase, beta-p 45.1 60 0.002 36.8 8.9 62 941-1003 476-550 (592)
377 3kci_A Probable E3 ubiquitin-p 44.5 3.2E+02 0.011 29.2 25.5 203 850-1065 55-292 (389)
378 1wp5_A Topoisomerase IV; broke 42.3 3.1E+02 0.011 28.4 26.6 240 816-1066 3-277 (323)
379 3zwu_A Alkaline phosphatase PH 42.0 75 0.0026 36.4 9.4 64 516-579 477-548 (592)
380 1zi0_A DNA gyrase subunit A; b 40.4 3.2E+02 0.011 28.0 27.1 164 847-1016 94-279 (307)
381 3f7f_A Nucleoporin NUP120; nuc 39.6 92 0.0031 36.4 9.6 37 985-1023 223-259 (729)
382 4fhn_B Nucleoporin NUP120; pro 36.9 16 0.00053 46.6 3.1 40 985-1024 239-278 (1139)
383 2zux_A YESW protein; beta-prop 34.7 5.4E+02 0.018 29.0 25.4 289 318-635 177-531 (591)
384 1zi0_A DNA gyrase subunit A; b 32.8 4.2E+02 0.014 27.1 28.3 237 817-1066 2-277 (307)
385 4a9v_A PHOX; hydrolase, beta-p 31.6 1.6E+02 0.0054 33.4 9.6 65 516-580 477-549 (592)
386 3ma5_A Tetratricopeptide repea 31.4 44 0.0015 27.4 4.2 53 7-65 17-69 (100)
387 4fhn_B Nucleoporin NUP120; pro 30.2 1E+02 0.0034 39.1 8.9 38 428-467 239-276 (1139)
388 4gco_A Protein STI-1; structur 30.0 52 0.0018 28.5 4.6 70 7-83 23-92 (126)
389 1suu_A DNA gyrase subunit A; t 26.8 5.3E+02 0.018 26.4 29.9 241 749-1014 6-283 (312)
390 3l6v_A GYRA, DNA gyrase subuni 26.3 6E+02 0.021 26.9 27.3 152 748-921 4-180 (370)
391 4ga2_A E3 SUMO-protein ligase 25.2 84 0.0029 28.1 5.3 70 8-84 42-111 (150)
392 4gco_A Protein STI-1; structur 25.1 90 0.0031 26.9 5.2 17 46-62 22-38 (126)
393 1hxi_A PEX5, peroxisome target 24.1 1E+02 0.0035 26.2 5.4 71 6-83 26-96 (121)
394 3mvd_K Regulator of chromosome 22.6 7.3E+02 0.025 26.6 29.8 202 848-1065 127-373 (423)
395 3upv_A Heat shock protein STI1 22.2 1.1E+02 0.0039 25.8 5.4 72 6-84 13-84 (126)
396 3l6v_A GYRA, DNA gyrase subuni 21.3 7.4E+02 0.025 26.1 29.3 238 816-1065 5-315 (370)
397 3f7f_A Nucleoporin NUP120; nuc 21.0 1.2E+02 0.0039 35.6 6.2 37 849-888 223-259 (729)
398 2nsz_A Programmed cell death p 20.7 1.1E+02 0.0036 26.9 4.6 21 42-62 12-32 (129)
399 2lni_A Stress-induced-phosphop 20.3 1.3E+02 0.0045 25.3 5.4 71 6-83 25-95 (133)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.2e-68 Score=643.93 Aligned_cols=567 Identities=23% Similarity=0.368 Sum_probs=486.7
Q ss_pred EEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEc
Q 001336 312 VVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 390 (1097)
Q Consensus 312 ~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 390 (1097)
..+.|. |.+.|++|+|||||++ ||+|+.|++|+|||. +++.+.. +.+|...|++++|+
T Consensus 8 e~~~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fs 66 (577)
T 2ymu_A 8 ERNRLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFS 66 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEEC
T ss_pred EeeEECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEEC
Confidence 335565 9999999999999996 589999999999995 5555442 67899999999999
Q ss_pred cCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCC
Q 001336 391 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 470 (1097)
Q Consensus 391 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~ 470 (1097)
||+++||+++.|++|+|||+. ++.+. .+.+|...|.+++|+|+++ +|++++.|+.+++|+.. ........+|.
T Consensus 67 pdg~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~ 139 (577)
T 2ymu_A 67 PDGQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHS 139 (577)
T ss_dssp TTSSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCS
T ss_pred CCCCEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCC
Confidence 999999999999999999975 44443 5889999999999999999 89999999999999964 55567778899
Q ss_pred cCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC
Q 001336 471 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 550 (1097)
Q Consensus 471 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 550 (1097)
..|.++.+ .+++..+++++.++.+++|+... ........+...+..+.++|+++++++++.+ +.|++||. ++
T Consensus 140 ~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~v~~w~~-~~ 211 (577)
T 2ymu_A 140 SSVWGVAF--SPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDD----KTVKLWNR-NG 211 (577)
T ss_dssp SCEEEEEE--CTTSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEETT----SEEEEECT-TS
T ss_pred Cceeeeee--ecCCccceecccccceeccccce-eeeeeccCCCcceeeeeecCCCCEEEEEcCC----CEEEEEeC-CC
Confidence 99999988 45567899999999999998653 4455566677899999999999999999864 47999995 57
Q ss_pred eeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001336 551 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK 630 (1097)
Q Consensus 551 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~ 630 (1097)
+.+..+.+|.. .+.+++|+|++++|++++.|+.|++||. +++.+..+..| ...|.+++|+|++..+++++.|+.|+
T Consensus 212 ~~~~~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i~ 287 (577)
T 2ymu_A 212 QLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTVK 287 (577)
T ss_dssp CEEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cEEEEEecCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence 78888888876 8999999999999999999999999996 46777777755 67899999999999999999999999
Q ss_pred EEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCccccccc
Q 001336 631 ILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEA 710 (1097)
Q Consensus 631 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1097)
+|+.... ....+.
T Consensus 288 ~w~~~~~--~~~~~~----------------------------------------------------------------- 300 (577)
T 2ymu_A 288 LWNRNGQ--LLQTLT----------------------------------------------------------------- 300 (577)
T ss_dssp EEETTSC--EEEEEC-----------------------------------------------------------------
T ss_pred EEeCCCc--EEEEEe-----------------------------------------------------------------
Confidence 9996432 222221
Q ss_pred ccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCC
Q 001336 711 VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP 790 (1097)
Q Consensus 711 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~ 790 (1097)
+|...|.+++|+|+++.+++++.||.+++|++...
T Consensus 301 --------------------------~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~------------------- 335 (577)
T 2ymu_A 301 --------------------------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ------------------- 335 (577)
T ss_dssp --------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-------------------
T ss_pred --------------------------cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-------------------
Confidence 26678999999999999999999999999976421
Q ss_pred CCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECC
Q 001336 791 PSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED 869 (1097)
Q Consensus 791 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~d 869 (1097)
.+.. +.+ |...|.+++|+|+|++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|
T Consensus 336 ---~~~~--~~~--~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d 406 (577)
T 2ymu_A 336 ---HLQT--LTG--HSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDD 406 (577)
T ss_dssp ---EEEE--ECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETT
T ss_pred ---eeEE--EeC--CCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCC
Confidence 1111 233 889999999999999999999 899999996 6788899999999999999999 89999999999
Q ss_pred CcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEc
Q 001336 870 SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFH 949 (1097)
Q Consensus 870 g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 949 (1097)
+.|++||. +++.+..+.+|...|++++|+||+++|++++.|+.|++||... + .+....+|. ..|.+++|+
T Consensus 407 ~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~-----~~~~~~~~~---~~v~~~~~s 476 (577)
T 2ymu_A 407 KTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHS---SSVRGVAFS 476 (577)
T ss_dssp SEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C-----EEEEEECCS---SCEEEEEEC
T ss_pred CEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C-----EEEEEcCCC---CCEEEEEEc
Confidence 99999995 5788889999999999999999999999999999999999754 2 233333444 579999999
Q ss_pred CCCcEEEE-EeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCC
Q 001336 950 LDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLP 1028 (1097)
Q Consensus 950 ~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~ 1028 (1097)
||+++|++ +.|+.|++||. +++++..+. +|...|++++|+|||++|++++.||+|++||. +++.+..+.
T Consensus 477 pd~~~las~~~d~~i~iw~~-~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~------ 546 (577)
T 2ymu_A 477 PDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT------ 546 (577)
T ss_dssp TTSCEEEEEETTSEEEEEET-TSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE------
T ss_pred CCCCEEEEEeCCCEEEEEcC-CCCEEEEEe--CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc------
Confidence 99999999 58899999995 577777776 89999999999999999999999999999996 567666665
Q ss_pred CCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEe
Q 001336 1029 TNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIE 1063 (1097)
Q Consensus 1029 ~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~ 1063 (1097)
+|.+.|..+ +|+| |+++|++++.|++|++||
T Consensus 547 -~h~~~v~~~--~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 547 -GHSSSVWGV--AFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp -CCSSCEEEE--EECT-TSSCEEEEETTSCEEEEC
T ss_pred -CCCCCEEEE--EEcC-CCCEEEEEeCCCEEEEeC
Confidence 789999877 8899 789999999999999997
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.3e-65 Score=622.17 Aligned_cols=562 Identities=23% Similarity=0.367 Sum_probs=482.8
Q ss_pred hhccCcCCCccccccccccccceeeCCCCCCcceeecCC------CCceEEEEee-cCCCeeEEEEccCCCeEEEEEeCC
Q 001336 269 LKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDD------LPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNM 341 (1097)
Q Consensus 269 ~~~~~~~~h~~~v~~l~~~~~~~~~s~~~~~~~~~~~~~------~~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~d 341 (1097)
.++.||+||++.|. +++|+|+|+++++.+.|. ...+++.++. |...|++++|+|||++ ||+|+.|
T Consensus 7 ~e~~~L~GH~~~V~-------~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~-las~~~d 78 (577)
T 2ymu_A 7 KERNRLEAHSSSVR-------GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT-IASASDD 78 (577)
T ss_dssp CEEEEECCCSSCEE-------EEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSE-EEEEETT
T ss_pred EEeeEECCCCCcEE-------EEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCCE-EEEEeCC
Confidence 35678889999998 677999999998886654 3566777887 9999999999999995 5899999
Q ss_pred CeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeee
Q 001336 342 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLE 421 (1097)
Q Consensus 342 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~ 421 (1097)
++|+|||+. ++.+.. +.+|...|.+++|+||+++|++++.|+.+++|+....... .
T Consensus 79 ~~i~vWd~~-~~~~~~-------------------~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~----~ 134 (577)
T 2ymu_A 79 KTVKLWNRN-GQLLQT-------------------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ----T 134 (577)
T ss_dssp SCEEEEETT-SCEEEE-------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE----E
T ss_pred CEEEEEECC-CCEEEE-------------------EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceee----e
Confidence 999999964 444432 6789999999999999999999999999999998765432 3
Q ss_pred eecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEc
Q 001336 422 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 501 (1097)
Q Consensus 422 l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 501 (1097)
..+|...|.++.|+|++. .+++++.++.+++|+. ..........|...|.++++ .+++.++++++.|+.|++||.
T Consensus 135 ~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~v~~w~~ 209 (577)
T 2ymu_A 135 LTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF--SPDGQTIASASDDKTVKLWNR 209 (577)
T ss_dssp ECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEE--CTTSSCEEEEETTSEEEEECT
T ss_pred ccCCCCceeeeeeecCCc--cceecccccceecccc-ceeeeeeccCCCcceeeeee--cCCCCEEEEEcCCCEEEEEeC
Confidence 678999999999999999 7999999999999994 55667777889999999988 556689999999999999996
Q ss_pred CCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeC
Q 001336 502 DNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD 581 (1097)
Q Consensus 502 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 581 (1097)
. .+....+..+...|.+++|+|++++|++++.++ .|++||. +++.+..+.+|.. .+.+++|+|+++.+++++.
T Consensus 210 ~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~----~i~~w~~-~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~ 282 (577)
T 2ymu_A 210 N-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK----TVKLWNR-NGQLLQTLTGHSS-SVNGVAFRPDGQTIASASD 282 (577)
T ss_dssp T-SCEEEEEECCSSCEEEEEECTTSSCEEEEETTS----CEEEECT-TSCEEEEECCCSS-CEEEEEECTTSSEEEEEET
T ss_pred C-CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCC----EEEEEeC-CCCEEEEEecCCC-CEEEEEEcCCCCEEEEEeC
Confidence 4 556667778888999999999999999998644 6999995 4677888888876 8999999999999999999
Q ss_pred CCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEeccccccccccccccccc
Q 001336 582 EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVK 661 (1097)
Q Consensus 582 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1097)
|+.|++|+. +++.+..+..| ...|.+++|+|++.+|++++.|+.|++|+.... .+..+.
T Consensus 283 d~~i~~w~~-~~~~~~~~~~h--~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~--~~~~~~---------------- 341 (577)
T 2ymu_A 283 DKTVKLWNR-NGQLLQTLTGH--SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--HLQTLT---------------- 341 (577)
T ss_dssp TSCEEEEET-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--EEEEEC----------------
T ss_pred CCEEEEEeC-CCcEEEEEecC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--eeEEEe----------------
Confidence 999999996 46777777755 678999999999999999999999999997543 111111
Q ss_pred CCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccc
Q 001336 662 APAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMR 741 (1097)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1097)
+|...
T Consensus 342 ---------------------------------------------------------------------------~~~~~ 346 (577)
T 2ymu_A 342 ---------------------------------------------------------------------------GHSSS 346 (577)
T ss_dssp ---------------------------------------------------------------------------CCSSC
T ss_pred ---------------------------------------------------------------------------CCCCC
Confidence 26678
Q ss_pred eEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEE
Q 001336 742 VSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYV 821 (1097)
Q Consensus 742 i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 821 (1097)
|.+++|+|+|+.+++++.||.+++|+... +.+. .+.+ |...|.+++|+|||++|
T Consensus 347 v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-----------------------~~~~-~~~~--~~~~v~~~~~s~dg~~l 400 (577)
T 2ymu_A 347 VWGVAFSPDGQTIASASDDKTVKLWNRNG-----------------------QLLQ-TLTG--HSSSVRGVAFSPDGQTI 400 (577)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTC-----------------------CEEE-EEEC--CSSCEEEEEECTTSSCE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEcCCC-----------------------CEEE-EecC--CCCCeEEEEECCCCCEE
Confidence 89999999999999999999999997431 1111 1233 88999999999999999
Q ss_pred EEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEec
Q 001336 822 MSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSN 900 (1097)
Q Consensus 822 a~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~ 900 (1097)
++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+|
T Consensus 401 ~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~sp 477 (577)
T 2ymu_A 401 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP 477 (577)
T ss_dssp EEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT
T ss_pred EEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcC
Confidence 9999 899999996 6788899999999999999999 8999999999999999996 5678889999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-EeCCeEEEEeCCCcceeeeeec
Q 001336 901 TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVP 979 (1097)
Q Consensus 901 dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~ 979 (1097)
|+++|++++.|+.|++||... + .+....+|. ..|.+++|+|||++|++ +.|+.|++||. +++++..+.
T Consensus 478 d~~~las~~~d~~i~iw~~~~-~-----~~~~~~~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~- 546 (577)
T 2ymu_A 478 DGQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT- 546 (577)
T ss_dssp TSCEEEEEETTSEEEEEETTS-C-----EEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-
T ss_pred CCCEEEEEeCCCEEEEEcCCC-C-----EEEEEeCCC---CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-
Confidence 999999999999999999643 3 333444554 57999999999999999 57899999996 577777776
Q ss_pred cCCCCCEEEEEEecCCCEEEEEecCCeEEEEe
Q 001336 980 REASGPITHATYSCDSQSIYVAFEEGSVGVLT 1011 (1097)
Q Consensus 980 ~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd 1011 (1097)
+|.+.|++++|+|||++|+|++.|++|++||
T Consensus 547 -~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 547 -GHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp -CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -CCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 8999999999999999999999999999997
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.4e-66 Score=623.65 Aligned_cols=575 Identities=14% Similarity=0.134 Sum_probs=461.3
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
+.+.+.+++|+|||++| |+++ ++.|+|||+.+++.... +.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~~l-~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDKI-QYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSSEE-EEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCCEE-EeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEEE
Confidence 46678899999999965 6766 57999999987765543 789999999999999999999
Q ss_pred EEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCC----CcEEEEECCCCceeEEeecCCcCe
Q 001336 398 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED----RVIKVWDAVTGTKQYIFEGHESPV 473 (1097)
Q Consensus 398 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~~h~~~v 473 (1097)
+|+.||+|+|||+.+++... ...+.+|.+.|.+++|+||++ .|++++.+ +.|++|| +++.+..+.+|...|
T Consensus 76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence 99999999999997654332 235789999999999999999 78887765 3666676 677888899999999
Q ss_pred EEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeee
Q 001336 474 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 553 (1097)
Q Consensus 474 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 553 (1097)
.+++|+++.. ..|++++.|++|++||....+....+..|...|.+++|+|+|++|++++.|+ .|++||..+++.+
T Consensus 151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~----~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG----TIVLYNGVDGTKT 225 (611)
T ss_dssp EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEEEEETTTCCEE
T ss_pred eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCC----cEEEEECCCCcEe
Confidence 9999965431 3699999999999999988777778888999999999999999999998754 6999999999988
Q ss_pred EEec-------CCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC-CCCCcceEEEcCCCCEEEEEEC
Q 001336 554 RTYH-------GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG-GLQASPCIRFNKEGILLAVSTN 625 (1097)
Q Consensus 554 ~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~s~~~ 625 (1097)
..+. +|.. .|.+++|+|++++|++++.|++|++||+.+++.+..+..+. ....+..+.| ++..+++++.
T Consensus 226 ~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~ 302 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISA 302 (611)
T ss_dssp EECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEET
T ss_pred eeeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeC
Confidence 8884 5665 89999999999999999999999999999999988886431 1223345556 6789999999
Q ss_pred CCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcc
Q 001336 626 DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPK 705 (1097)
Q Consensus 626 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1097)
|+.+++|+...+ .....+.
T Consensus 303 d~~i~~~~~~~~-~~~~~~~------------------------------------------------------------ 321 (611)
T 1nr0_A 303 NGFINFVNPELG-SIDQVRY------------------------------------------------------------ 321 (611)
T ss_dssp TCCEEEEETTTT-EEEEEEC------------------------------------------------------------
T ss_pred CCcEEEEeCCCC-CcceEEc------------------------------------------------------------
Confidence 999999998766 2222221
Q ss_pred cccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCC
Q 001336 706 IADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAP 785 (1097)
Q Consensus 706 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 785 (1097)
+|...|.+++|+|||++|++++.|+.|++||+..
T Consensus 322 -------------------------------gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~--------------- 355 (611)
T 1nr0_A 322 -------------------------------GHNKAITALSSSADGKTLFSADAEGHINSWDIST--------------- 355 (611)
T ss_dssp -------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------------
T ss_pred -------------------------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC---------------
Confidence 3778899999999999999999999999997653
Q ss_pred cccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEE---eCCCCCCeEEEEEeCCCCC
Q 001336 786 QLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTT---FMPPPPAATFLAFHPQDNN 861 (1097)
Q Consensus 786 ~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~---~~~~~~~i~~l~~sp~~~~ 861 (1097)
+........ +|...|.+++|++++. +++++ |+++++|++.++..... .........+++|+| +++
T Consensus 356 -------~~~~~~~~~--~h~~~v~~~~~s~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~ 424 (611)
T 1nr0_A 356 -------GISNRVFPD--VHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGD 424 (611)
T ss_dssp -------CCEEECSSC--SCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSS
T ss_pred -------Cceeeeccc--CCcceEEEEEECCCCc-EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCc
Confidence 222221112 3889999999998775 55555 99999999876543210 001234568899999 787
Q ss_pred EEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCcc
Q 001336 862 IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASAL 941 (1097)
Q Consensus 862 ~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 941 (1097)
+++++ .++.+++|+ .++ +..+. |...+.+++|+|||++|++++.|++|++||+.+++... ... .+|. .
T Consensus 425 ~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~---~ 492 (611)
T 1nr0_A 425 IAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHP---A 492 (611)
T ss_dssp CEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECS---S
T ss_pred EEEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCC---C
Confidence 77777 467899998 445 55554 88889999999999999999999999999998754211 122 2333 5
Q ss_pred CCeEEEEcCCCcEEEE-EeCCeEEEEeCCC-cceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceee
Q 001336 942 ADTRVQFHLDQTHLLA-VHETQIAIYEAPK-LECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRC 1019 (1097)
Q Consensus 942 ~v~~l~~s~dg~~l~~-~~d~~v~vwd~~~-~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~ 1019 (1097)
.|.+++|||||++|++ +.|++|++|++.+ ++........+|...|.+++|+|||++|++++.|++|++|++.++....
T Consensus 493 ~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~ 572 (611)
T 1nr0_A 493 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP 572 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCC
T ss_pred ceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccccc
Confidence 7999999999999999 5889999999987 5554432233599999999999999999999999999999998865321
Q ss_pred eeCCCCcCCCCC-CCceeeEEEEEcCCCCCEEEEEecCCcEEEEecC
Q 001336 1020 RINPTAYLPTNP-SLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1065 (1097)
Q Consensus 1020 ~~~~~~~~~~~h-~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~ 1065 (1097)
. ....+| .+.|.++ +|+| ++. |++++.|++|++|+++
T Consensus 573 ~-----~~~~~h~~~~v~~v--~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 573 I-----IIKGAHAMSSVNSV--IWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp E-----EETTSSTTSCEEEE--EEEE-TTE-EEEEETTSCEEEEECC
T ss_pred c-----hhhccCcccCeeEE--EEcC-CCE-EEEecCCCCEEEEecc
Confidence 0 112367 7888877 8888 556 9999999999999974
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3e-64 Score=610.42 Aligned_cols=563 Identities=15% Similarity=0.186 Sum_probs=454.9
Q ss_pred ceeeCCCCCCcceeecCCC------CceEEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeE
Q 001336 290 PVAYTPQSLGQSSYSTDDL------PKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKV 362 (1097)
Q Consensus 290 ~~~~s~~~~~~~~~~~~~~------~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~ 362 (1097)
+++|+|+|+.+++...+.. ......++. |...|++++|||||++ ||+|+.||+|+|||+.+++.....
T Consensus 23 ~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~-lasg~~d~~v~lWd~~~~~~~~~~---- 97 (611)
T 1nr0_A 23 VLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYY-CASGDVHGNVRIWDTTQTTHILKT---- 97 (611)
T ss_dssp CCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEESSSTTCCEEE----
T ss_pred EEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcE-EEEEeCCCCEEEeECCCCcceeeE----
Confidence 5679999998776642211 234455565 9999999999999995 599999999999999765433211
Q ss_pred eeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECC----CEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCC
Q 001336 363 WELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPN 438 (1097)
Q Consensus 363 ~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~ 438 (1097)
.+.+|.+.|.+++|+|||++||+++.+ +.|++||. ++... .+.+|...|.+++|+|++
T Consensus 98 -------------~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~---~l~gh~~~v~~v~f~p~~ 159 (611)
T 1nr0_A 98 -------------TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNG---NLTGQARAMNSVDFKPSR 159 (611)
T ss_dssp -------------EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCB---CCCCCSSCEEEEEECSSS
T ss_pred -------------eecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcc---eecCCCCCceEEEECCCC
Confidence 156799999999999999999999875 47888874 44333 588999999999999998
Q ss_pred CcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeec-------
Q 001336 439 KQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD------- 511 (1097)
Q Consensus 439 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------- 511 (1097)
.. .|++|+.|++|++||..+++++.++.+|...|.+++|+ ++|++|++++.|++|++||+.+++....+.
T Consensus 160 ~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fs--pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~ 236 (611)
T 1nr0_A 160 PF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN--PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV 236 (611)
T ss_dssp SC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSC
T ss_pred Ce-EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEEC--CCCCEEEEEECCCcEEEEECCCCcEeeeecccccccc
Confidence 74 59999999999999999999999999999999999994 567899999999999999998887766663
Q ss_pred CCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCC--cceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001336 512 APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK--RSVGVVQFDTTKNRFLAAGDEFMIKFWD 589 (1097)
Q Consensus 512 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd 589 (1097)
.|...|.+++|+|++++|++++.| +.|++||+.+++.+..+..+.. .....+.| ++..+++++.|+.|++|+
T Consensus 237 ~h~~~V~~v~~spdg~~l~s~s~D----~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~ 310 (611)
T 1nr0_A 237 AHSGSVFGLTWSPDGTKIASASAD----KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVN 310 (611)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETT----SEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEE
T ss_pred ccCCCEEEEEECCCCCEEEEEeCC----CeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEe
Confidence 577899999999999999999864 4799999999998888865422 13445555 678999999999999999
Q ss_pred CCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccc
Q 001336 590 MDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFG 669 (1097)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1097)
..+++....+.+| ...|.+++|+|++++|++++.|++|++||+.++. ....+
T Consensus 311 ~~~~~~~~~~~gh--~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~-~~~~~------------------------- 362 (611)
T 1nr0_A 311 PELGSIDQVRYGH--NKAITALSSSADGKTLFSADAEGHINSWDISTGI-SNRVF------------------------- 362 (611)
T ss_dssp TTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEECS-------------------------
T ss_pred CCCCCcceEEcCC--CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-eeeec-------------------------
Confidence 9999888777755 7789999999999999999999999999998762 11110
Q ss_pred cCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEcc
Q 001336 670 SANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTN 749 (1097)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 749 (1097)
..+|...|.+++|++
T Consensus 363 -----------------------------------------------------------------~~~h~~~v~~~~~s~ 377 (611)
T 1nr0_A 363 -----------------------------------------------------------------PDVHATMITGIKTTS 377 (611)
T ss_dssp -----------------------------------------------------------------SCSCSSCEEEEEECT
T ss_pred -----------------------------------------------------------------ccCCcceEEEEEECC
Confidence 013778899999997
Q ss_pred CCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEeCCeE
Q 001336 750 SGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKI 829 (1097)
Q Consensus 750 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sdg~i 829 (1097)
++ .+++++.|+.+++|++...... ........ .......++|+|+|+.++++.++.+
T Consensus 378 ~~-~l~s~s~d~~v~~w~~~~~~~~-----------------~~~~~~~~-----~~~~~~~~~~s~dg~~~~~~~~~~v 434 (611)
T 1nr0_A 378 KG-DLFTVSWDDHLKVVPAGGSGVD-----------------SSKAVANK-----LSSQPLGLAVSADGDIAVAACYKHI 434 (611)
T ss_dssp TS-CEEEEETTTEEEEECSSSSSSC-----------------TTSCCEEE-----CSSCEEEEEECTTSSCEEEEESSEE
T ss_pred CC-cEEEEEcCCceEEeecCCcccc-----------------ccceeeee-----cCCCCcEEEEeCCCcEEEEEeCceE
Confidence 76 5889999999999987642210 00000001 2345678999999999988889999
Q ss_pred EEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceE--EEEecccccCeEEEEEecCCCEEEE
Q 001336 830 SLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV--KTKLKGHQKRITGLAFSNTLNVLVS 907 (1097)
Q Consensus 830 ~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s 907 (1097)
++|+ .++ +..+. |...+.+++|+| ++++||+|+.|++|++||+.+++. +.. .+|...|++++|+|||++|++
T Consensus 435 ~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las 508 (611)
T 1nr0_A 435 AIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVA 508 (611)
T ss_dssp EEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEE
T ss_pred EEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEE
Confidence 9998 344 55554 788899999999 999999999999999999988653 334 679999999999999999999
Q ss_pred EeCCCcEEEEEcCC-CcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-EeCCeEEEEeCCCcceeeeeeccCC-CC
Q 001336 908 SGADSQLCVWSTDG-WEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREA-SG 984 (1097)
Q Consensus 908 ~~~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h-~~ 984 (1097)
++.|++|++|++.+ ++.... ....+|. ..|.+++|+|||++|++ +.|++|++||+++++........+| ..
T Consensus 509 ~s~d~~v~~w~~~~~~~~~~~---~~~~~H~---~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~ 582 (611)
T 1nr0_A 509 TDQSRKVIPYSVANNFELAHT---NSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMS 582 (611)
T ss_dssp EETTSCEEEEEGGGTTEESCC---CCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTS
T ss_pred EcCCCCEEEEEcCCCCceeee---eeeeecc---cceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCccc
Confidence 99999999999986 332110 0112233 67999999999999999 5899999999998764331223478 89
Q ss_pred CEEEEEEecCCCEEEEEecCCeEEEEeCC
Q 001336 985 PITHATYSCDSQSIYVAFEEGSVGVLTAS 1013 (1097)
Q Consensus 985 ~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~ 1013 (1097)
.|.+++|+||++ |++++.|++|++|++.
T Consensus 583 ~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 583 SVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp CEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred CeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 999999999998 9999999999999973
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2e-63 Score=658.43 Aligned_cols=615 Identities=16% Similarity=0.186 Sum_probs=504.6
Q ss_pred ecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEE
Q 001336 317 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 396 (1097)
Q Consensus 317 ~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 396 (1097)
.|.+.|++++|+|+|++ +++|+.||+|+|||+.+++.+.. +.+|...|.+++|+|+|++|
T Consensus 613 ~h~~~v~~~~~s~~~~~-l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~~l 672 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQR-IASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDDSYI 672 (1249)
T ss_dssp CCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred cccccEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCCCEE
Confidence 49999999999999995 58999999999999999987664 67899999999999999999
Q ss_pred EEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEE
Q 001336 397 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 476 (1097)
Q Consensus 397 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 476 (1097)
|+|+.||.|+|||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|.+.|.++
T Consensus 673 ~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~ 749 (1249)
T 3sfz_A 673 ATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749 (1249)
T ss_dssp EEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEE
T ss_pred EEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEE
Confidence 999999999999999998665 57899999999999996554489999999999999999999999999999999999
Q ss_pred eecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCC-------------CCceEEEEEccCCCEEEEeeeCCCCCceEE
Q 001336 477 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP-------------GHSSTMMAYSADGARLFSCGTNKEGESYLV 543 (1097)
Q Consensus 477 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 543 (1097)
+|+ +++.++++++.||.|++||+.+......+... ...+.+++|+|+|+.+++++ ++.+.
T Consensus 750 ~~s--p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~~v~ 822 (1249)
T 3sfz_A 750 RFS--PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KNKVL 822 (1249)
T ss_dssp EEC--SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TTEEE
T ss_pred EEe--cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----CCcEE
Confidence 995 46689999999999999999887665544321 22678899999999999986 33699
Q ss_pred EEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEE
Q 001336 544 EWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 623 (1097)
Q Consensus 544 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~ 623 (1097)
+||..++.....+...+...+.+++|+|++.++++++.||.|++||+.++..+..+..| ...|.+++|+|++.+++++
T Consensus 823 ~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spdg~~l~s~ 900 (1249)
T 3sfz_A 823 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH--LSWVHGVMFSPDGSSFLTA 900 (1249)
T ss_dssp EEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEE
T ss_pred EEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC--ccceEEEEECCCCCEEEEE
Confidence 99999998888877444458999999999999999999999999999999999888865 7789999999999999999
Q ss_pred ECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccC
Q 001336 624 TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVK 703 (1097)
Q Consensus 624 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1097)
+.||.|++|++.+..... ...... .. ...+ .....
T Consensus 901 s~dg~v~vw~~~~~~~~~-~~~~~~-~~-------------------------------------~~~~------~~~~~ 935 (1249)
T 3sfz_A 901 SDDQTIRVWETKKVCKNS-AIVLKQ-EI-------------------------------------DVVF------QENET 935 (1249)
T ss_dssp ETTSCEEEEEHHHHHSCC-SSSEEE-EE-------------------------------------EEEE------ETTEE
T ss_pred eCCCeEEEEEccccceee-eecccc-ee-------------------------------------eEEE------cCCCc
Confidence 999999999976431100 000000 00 0000 00111
Q ss_pred cccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCcccccc
Q 001336 704 PKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQ 783 (1097)
Q Consensus 704 ~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 783 (1097)
.++.....+.+.+|..... .... .+...+.+++|+|+++++++++.+|.|.+|++..
T Consensus 936 ~~~~~~~~~~~~~~~~~~~----~~~~------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~------------- 992 (1249)
T 3sfz_A 936 MVLAVDNIRGLQLIAGKTG----QIDY------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN------------- 992 (1249)
T ss_dssp EEEEEESSSSEEEEEESSC----CEEE------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT-------------
T ss_pred EEEEecCCcceEEEecCcc----eEEE------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC-------------
Confidence 2222233334444433211 1111 1356799999999999999999999999997653
Q ss_pred CCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCE
Q 001336 784 APQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNI 862 (1097)
Q Consensus 784 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~ 862 (1097)
+.... .+.+ |...|.+++|+|+|++|++++ |+.|++||+.+++... +..|...|.+++|+| ++ .
T Consensus 993 ---------~~~~~-~~~~--h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~ 1057 (1249)
T 3sfz_A 993 ---------NRVFS-SGVG--HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-R 1057 (1249)
T ss_dssp ---------TSCEE-ECCC--CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-E
T ss_pred ---------Cceee-eccc--CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-c
Confidence 22222 1233 899999999999999999999 9999999999988764 557899999999998 55 6
Q ss_pred EEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccC
Q 001336 863 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALA 942 (1097)
Q Consensus 863 la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1097)
+++++.||.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.|++|++||+.+++. +....+|. ..
T Consensus 1058 l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~-----~~~l~~h~---~~ 1129 (1249)
T 3sfz_A 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-----LHELKGHN---GC 1129 (1249)
T ss_dssp EEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC-----SBCCCCCS---SC
T ss_pred EEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce-----eeeeccCC---Cc
Confidence 78899999999999999999999999999999999999999999999999999999988663 23334444 57
Q ss_pred CeEEEEcCCCcEEEEE-eCCeEEEEeCCCcceeeeee-------ccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCC
Q 001336 943 DTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFV-------PREASGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1014 (1097)
Q Consensus 943 v~~l~~s~dg~~l~~~-~d~~v~vwd~~~~~~~~~~~-------~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~ 1014 (1097)
|.+++|+|||++|+++ .||.|++||+.+++.+..+. ..+|.+.|++++|+|||++|++++ |.|++||+.+
T Consensus 1130 v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~ 1207 (1249)
T 3sfz_A 1130 VRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVAT 1207 (1249)
T ss_dssp EEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSS
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCC
Confidence 9999999999999995 78999999999998876651 136889999999999999999885 8999999999
Q ss_pred CceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCC
Q 001336 1015 LRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1066 (1097)
Q Consensus 1015 ~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~ 1066 (1097)
++.+..+. +|.+.|.++ +|+| ++.+|++++.||.|++|++.+
T Consensus 1208 g~~~~~~~-------~~~~~i~~~--~~s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1208 GDSSQTFY-------TNGTNLKKI--HVSP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp CBCCCCCC-------CSSCCCCCC--EECS-SSCCEEEECTTCCEEEECCCC
T ss_pred Cceeeeee-------ccCCcccEE--EECC-CCCEEEEecCCcEEEEEeecC
Confidence 98876554 566778776 8889 789999999999999999863
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.3e-59 Score=569.14 Aligned_cols=555 Identities=10% Similarity=0.142 Sum_probs=470.7
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCC----ceeeeeeeeEeeccccCccccccccCCCCCC-eEEEEEcc-
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSR----ERIAVKSFKVWELGACSMPLQASLSSDYTAS-VNRVMWSP- 391 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~v~~sp- 391 (1097)
|...|++++|+|||++| ++++ ++.|.|||+.++ +.... +.+|... |++++|+|
T Consensus 17 ~~~~v~~~~~spdg~~l-~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~sp~ 75 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAI-AYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFSPI 75 (615)
T ss_dssp CTTCCCCCEEETTTTEE-EEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEECSS
T ss_pred ccCceeEEEECCCCCEE-EEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEECcC
Confidence 77899999999999965 5665 889999999987 54442 7889999 99999999
Q ss_pred -CCCEEEEEECCCEEEEEEccCC------eeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCC----CcEEEEECCCC
Q 001336 392 -DGTLFGVAYSKHIVHLYTYHGG------DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED----RVIKVWDAVTG 460 (1097)
Q Consensus 392 -d~~~las~~~dg~i~iwd~~~~------~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d----~~i~iwd~~~~ 460 (1097)
++++||+|+.||.|+|||+.++ + ......+.+|...|.+++|+|+++ +|++++.+ +.|++|| .+
T Consensus 76 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~ 150 (615)
T 1pgu_A 76 KGSQYLCSGDESGKVIVWGWTFDKESNSVE-VNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SG 150 (615)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEE-EEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TC
T ss_pred CCCCEEEEecCCCEEEEEeCCCCccccccc-ccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CC
Confidence 9999999999999999999765 2 223335788999999999999999 78998887 6788887 77
Q ss_pred ceeEEeecCCcCeEEEeecccCCcc-EEEEEcCCCeEEEEEcCCCCceeeecCCCC---ceEEEEEccC-CCEEEEeeeC
Q 001336 461 TKQYIFEGHESPVYSICPHHKENIQ-FIFSTATDGKIKAWLYDNLGSRVDYDAPGH---SSTMMAYSAD-GARLFSCGTN 535 (1097)
Q Consensus 461 ~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~~~~~ 535 (1097)
+.+..+.+|...|.+++|++ ++. .+++++.|+.|++||+.+.+....+..+.. .|.+++|+|+ ++++++++.+
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD 228 (615)
T ss_dssp CEEEECCSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred CcceeeecCCccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC
Confidence 88999999999999999955 445 899999999999999998888888888888 8999999999 9999999864
Q ss_pred CCCCceEEEEeCCCCeeeEEe-c---CCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC--CCCCcc
Q 001336 536 KEGESYLVEWNESEGAVKRTY-H---GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG--GLQASP 609 (1097)
Q Consensus 536 ~~~~~~i~~wd~~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~ 609 (1097)
+ .|++||+.+++.+..+ . .|.. .+.+++|+ ++.+|++++.|+.|++||+.+++.+..+..+. ....+.
T Consensus 229 g----~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 302 (615)
T 1pgu_A 229 R----KISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 302 (615)
T ss_dssp C----CEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEE
T ss_pred C----eEEEEECCCCCEeEEecccccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCcee
Confidence 4 6999999999999998 5 6665 89999999 99999999999999999999999999887652 124566
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCcccccccccccccccccc
Q 001336 610 CIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAM 689 (1097)
Q Consensus 610 ~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1097)
++.|+ ++.++++++.||.|++|++.++ +....+.
T Consensus 303 ~~~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~-------------------------------------------- 336 (615)
T 1pgu_A 303 GVVAT-GNGRIISLSLDGTLNFYELGHD-EVLKTIS-------------------------------------------- 336 (615)
T ss_dssp EEEEE-ETTEEEEEETTSCEEEEETTEE-EEEEEEC--------------------------------------------
T ss_pred EEEeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEe--------------------------------------------
Confidence 77885 8899999999999999998765 3333222
Q ss_pred ccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccC
Q 001336 690 VGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWP 769 (1097)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~ 769 (1097)
+|...|.+++| |+ +++++.||.|++|++.
T Consensus 337 -----------------------------------------------~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 337 -----------------------------------------------GHNKGITALTV-NP---LISGSYDGRIMEWSSS 365 (615)
T ss_dssp -----------------------------------------------CCSSCEEEEET-TT---TEEEETTSCEEETTTT
T ss_pred -----------------------------------------------CCCCCEEEEEe-cC---cEEECCCCeEEEEEch
Confidence 26678999999 88 9999999999999653
Q ss_pred CCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCC
Q 001336 770 RNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPP 848 (1097)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~ 848 (1097)
.+. . .|...|.+++| +++..|++++ |+.|++|++.+++...
T Consensus 366 -------------------------~~~---~--~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~------- 407 (615)
T 1pgu_A 366 -------------------------SMH---Q--DHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS------- 407 (615)
T ss_dssp -------------------------EEE---C--CCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS-------
T ss_pred -------------------------hhc---C--cccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC-------
Confidence 011 1 38999999999 6677888887 9999999987655432
Q ss_pred CeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeC-CCcEEEEEcCCCcccce
Q 001336 849 AATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGA-DSQLCVWSTDGWEKQAS 927 (1097)
Q Consensus 849 ~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~-Dg~i~iwd~~~~~~~~~ 927 (1097)
.+.+++|+| ++.+++++ .++.+++|++.+++.+..+. |...+++++|+ +++|++++. |+.|++||+.+++...
T Consensus 408 ~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~- 481 (615)
T 1pgu_A 408 QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF- 481 (615)
T ss_dssp CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE-
T ss_pred CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc-
Confidence 688999999 88888777 88999999999999888877 88999999999 889999999 9999999998854211
Q ss_pred eeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEEEEeCCCcceeeeeeccC-CCCCEEEEEEec----------CC
Q 001336 928 KFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPRE-ASGPITHATYSC----------DS 995 (1097)
Q Consensus 928 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~-h~~~v~~v~~s~----------dg 995 (1097)
....++. ..|.+++|+|++++|+++ .|+.|++||+.+++.+..+. + |...|++++|+| |+
T Consensus 482 ---~~~~~~~---~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~~~~~~ 553 (615)
T 1pgu_A 482 ---DLKTPLR---AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW--AFRTSKINAISWKPAEKGANEEEIEE 553 (615)
T ss_dssp ---ECSSCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS--CCCSSCEEEEEECCCC------CCSC
T ss_pred ---cccCCcc---CceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEee--cCCCCceeEEEEcCccccccccccCC
Confidence 3333333 679999999999999995 78999999999999988765 5 899999999999 99
Q ss_pred CEEEEEecCCeEEEEeCCCC-ceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCC
Q 001336 996 QSIYVAFEEGSVGVLTASTL-RLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1066 (1097)
Q Consensus 996 ~~l~s~s~Dg~v~vwd~~~~-~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~ 1066 (1097)
++|++++.||+|++||+.++ +.+..+. +|.+.|..+ +|+| ++. |++++.||+|++|++..
T Consensus 554 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------~h~~~v~~l--~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 554 DLVATGSLDTNIFIYSVKRPMKIIKALN-------AHKDGVNNL--LWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp CEEEEEETTSCEEEEESSCTTCCEEETT-------SSTTCEEEE--EEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred CEEEEEcCCCcEEEEECCCCceechhhh-------cCccceEEE--EEcC-CCC-eEEecCCceEEEEeeec
Confidence 99999999999999999998 5555444 788899877 8889 567 99999999999999864
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.1e-59 Score=620.02 Aligned_cols=578 Identities=15% Similarity=0.217 Sum_probs=475.4
Q ss_pred cCCCccccccccccccceeeCCCCCCcceeecCCC-------CceEEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEE
Q 001336 274 PFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDL-------PKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVM 345 (1097)
Q Consensus 274 ~~~h~~~v~~l~~~~~~~~~s~~~~~~~~~~~~~~-------~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~ 345 (1097)
+.+|.+.|+ +++|+|+|+.+++.+.|+. ....+.++. |...|++++|+|+|++ +++|+.||.|+
T Consensus 611 ~~~h~~~v~-------~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~d~~v~ 682 (1249)
T 3sfz_A 611 VRPHTDAVY-------HACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY-IATCSADKKVK 682 (1249)
T ss_dssp ECCCSSCEE-------EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEE
T ss_pred EecccccEE-------EEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCE-EEEEeCCCeEE
Confidence 448999888 6779999999988877663 456677777 9999999999999995 58999999999
Q ss_pred EEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc--CCCEEEEEECCCEEEEEEccCCeeeeeeeeee
Q 001336 346 LWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE 423 (1097)
Q Consensus 346 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~ 423 (1097)
|||+.+++.+.. +.+|...|.+++|+| ++.++++|+.||.|++||+.+++.+. .+.
T Consensus 683 vwd~~~~~~~~~-------------------~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~ 740 (1249)
T 3sfz_A 683 IWDSATGKLVHT-------------------YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN---TMF 740 (1249)
T ss_dssp EEETTTCCEEEE-------------------EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE---EEC
T ss_pred EEECCCCceEEE-------------------EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh---eec
Confidence 999999987664 668999999999999 56699999999999999999988665 477
Q ss_pred cccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeec-------------CCcCeEEEeecccCCccEEEEE
Q 001336 424 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG-------------HESPVYSICPHHKENIQFIFST 490 (1097)
Q Consensus 424 ~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-------------h~~~v~~~~~~~~~~~~~l~s~ 490 (1097)
+|.+.|++++|+|+++ ++++++.||.|++||+.+++....+.. +...+.+++| .++|..++++
T Consensus 741 ~h~~~v~~~~~sp~~~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~dg~~l~~~ 816 (1249)
T 3sfz_A 741 GHTNSVNHCRFSPDDE--LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW--SADGDKIIVA 816 (1249)
T ss_dssp CCSSCEEEEEECSSTT--EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB--CTTSSEEEEE
T ss_pred CCCCCEEEEEEecCCC--EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE--CCCCCEEEEE
Confidence 9999999999999999 899999999999999999988776642 2236777877 5566888887
Q ss_pred cCCCeEEEEEcCCCCceeeec-CCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEE
Q 001336 491 ATDGKIKAWLYDNLGSRVDYD-APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQF 569 (1097)
Q Consensus 491 ~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~ 569 (1097)
+ ++.+.+||+.+......+. .+...+.+++|+|+++++++++.++ .|++||+.++..+..+.+|.. .|.+++|
T Consensus 817 ~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg----~v~vwd~~~~~~~~~~~~h~~-~v~~v~~ 890 (1249)
T 3sfz_A 817 A-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQY----CVELWNIDSRLKVADCRGHLS-WVHGVMF 890 (1249)
T ss_dssp E-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSS----CEEEEETTTTEEEEEECCCSS-CEEEEEE
T ss_pred c-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCC----eEEEEEcCCCceeeecCCCcc-ceEEEEE
Confidence 7 6899999999888776655 6677999999999999999997644 699999999999999999987 8999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceEEE-----------------------------EecC------CCCCCcceEEEc
Q 001336 570 DTTKNRFLAAGDEFMIKFWDMDNVNLLAS-----------------------------IDAD------GGLQASPCIRFN 614 (1097)
Q Consensus 570 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------------------------~~~~------~~~~~v~~v~~s 614 (1097)
+|+++++++++.||.|++|++.++..... .... .....+.+++|+
T Consensus 891 spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 970 (1249)
T 3sfz_A 891 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS 970 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEc
Confidence 99999999999999999999754211100 0000 012345566666
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCC
Q 001336 615 KEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSN 694 (1097)
Q Consensus 615 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1097)
|++.++++|+.+|.|++|++.++ .....+
T Consensus 971 p~g~~l~~g~~~g~i~i~d~~~~-~~~~~~-------------------------------------------------- 999 (1249)
T 3sfz_A 971 PHLEYVAFGDEDGAIKIIELPNN-RVFSSG-------------------------------------------------- 999 (1249)
T ss_dssp TTSSEEEEEETTSCCEEEETTTT-SCEEEC--------------------------------------------------
T ss_pred CCCCEEEEEcCCCCEEEEEcCCC-ceeeec--------------------------------------------------
Confidence 66666666666666666665544 111111
Q ss_pred CCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCC
Q 001336 695 DSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERN 774 (1097)
Q Consensus 695 ~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~ 774 (1097)
.+|...|.+++|+|+|+++++++.||.|++|++..
T Consensus 1000 -----------------------------------------~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~---- 1034 (1249)
T 3sfz_A 1000 -----------------------------------------VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT---- 1034 (1249)
T ss_dssp -----------------------------------------CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT----
T ss_pred -----------------------------------------ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC----
Confidence 23778899999999999999999999999997653
Q ss_pred ccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEcCCCceeEEeCCCCCCeEEEE
Q 001336 775 STGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLA 854 (1097)
Q Consensus 775 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 854 (1097)
+.... +. .|...|.+++|++++.+++.+.|++|++||+.+++....+.+|...|.+++
T Consensus 1035 ------------------~~~~~--~~--~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~ 1092 (1249)
T 3sfz_A 1035 ------------------GDYVF--LQ--AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCA 1092 (1249)
T ss_dssp ------------------TEEEC--CB--CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEE
T ss_pred ------------------CceEE--Ee--cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEE
Confidence 22221 22 288999999999988765555599999999999999999999999999999
Q ss_pred EeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccee-eEeec
Q 001336 855 FHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASK-FLTIP 933 (1097)
Q Consensus 855 ~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~-~~~~~ 933 (1097)
|+| +++++++++.||.|++||+.+++.+..+.+|.+.|++++|+|||++|++++.||.|++||+.+++..... .....
T Consensus 1093 ~s~-d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~ 1171 (1249)
T 3sfz_A 1093 ISS-DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVE 1171 (1249)
T ss_dssp ECS-SSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC--
T ss_pred ECC-CCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccc
Confidence 999 8999999999999999999999999999999999999999999999999999999999999987744321 11111
Q ss_pred CCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCC
Q 001336 934 NGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAS 1013 (1097)
Q Consensus 934 ~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~ 1013 (1097)
.....+...|.+++|+|||++|+++. |.|++||+.+++.+..+. .|...|.+++|+|||++|++++.||.|++|++.
T Consensus 1172 ~~~~~~~~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~~~~--~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1172 EGTATHGGWVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQTFY--TNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp -----CCSCCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCCCCC--CSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred ccccccCceEEEEEECCCCCEEEECC-CeEEEEECCCCceeeeee--ccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 11112236799999999999998874 999999999999988776 788999999999999999999999999999974
No 8
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.4e-57 Score=550.68 Aligned_cols=555 Identities=12% Similarity=0.160 Sum_probs=464.6
Q ss_pred CCccccccccccccceeeCCCCCCcceeecCC------CCc----eEEEEee-cCCC-eeEEEEcc--CCCeEEEEEeCC
Q 001336 276 GISDEVNNLSVNILPVAYTPQSLGQSSYSTDD------LPK----TVVMTLN-QGSA-VKSMDFHP--VQQILLVVGTNM 341 (1097)
Q Consensus 276 ~h~~~v~~l~~~~~~~~~s~~~~~~~~~~~~~------~~~----~~~~~~~-h~~~-V~~v~fsp--dg~~lla~gs~d 341 (1097)
.|...|. +++|+|+|+.++...... ... .....+. |... |++++|+| ++++ |++|+.|
T Consensus 16 ~~~~~v~-------~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~-l~s~~~d 87 (615)
T 1pgu_A 16 TQRNFTT-------HLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY-LCSGDES 87 (615)
T ss_dssp CCTTCCC-------CCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCE-EEEEETT
T ss_pred CccCcee-------EEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCE-EEEecCC
Confidence 5666666 677999998776654111 123 4566666 8899 99999999 9985 5899999
Q ss_pred CeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECC----CEEEEEEccCCeeee
Q 001336 342 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK----HIVHLYTYHGGDELR 417 (1097)
Q Consensus 342 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~d----g~i~iwd~~~~~~~~ 417 (1097)
|.|+|||+.+++.......+ ....+.+|...|.+++|+|++++|++++.+ +.|++|| .++.+.
T Consensus 88 g~v~vw~~~~~~~~~~~~~~-----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~ 154 (615)
T 1pgu_A 88 GKVIVWGWTFDKESNSVEVN-----------VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG 154 (615)
T ss_dssp SEEEEEEEEEEGGGTEEEEE-----------EEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE
T ss_pred CEEEEEeCCCCccccccccc-----------ccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce
Confidence 99999999765110000000 000256799999999999999999999988 7888888 444343
Q ss_pred eeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCc---CeEEEeecccCC-ccEEEEEcCC
Q 001336 418 NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES---PVYSICPHHKEN-IQFIFSTATD 493 (1097)
Q Consensus 418 ~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~---~v~~~~~~~~~~-~~~l~s~~~d 493 (1097)
.+.+|...|.+++|+|+++. ++++++.|+.|++||+.+++.+..+.+|.. .|.+++|++ + +++|++++.|
T Consensus 155 ---~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d 228 (615)
T 1pgu_A 155 ---EVSGHSQRINACHLKQSRPM-RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP--DSGEFVITVGSD 228 (615)
T ss_dssp ---ECCSCSSCEEEEEECSSSSC-EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS--TTCCEEEEEETT
T ss_pred ---eeecCCccEEEEEECCCCCc-EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC--CCCCEEEEEeCC
Confidence 57899999999999999975 699999999999999999999999999999 999999954 5 6899999999
Q ss_pred CeEEEEEcCCCCceeee-c---CCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCC---CcceEE
Q 001336 494 GKIKAWLYDNLGSRVDY-D---APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG---KRSVGV 566 (1097)
Q Consensus 494 g~i~iwd~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~---~~~v~~ 566 (1097)
|.|++||+++.+....+ . .+...|.+++|+ +++++++++.+ +.|++||+.+++.+..+..+. ...+..
T Consensus 229 g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 303 (615)
T 1pgu_A 229 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD----ATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 303 (615)
T ss_dssp CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT----SEEEEEETTTTEEEEEEECCTTCGGGCEEE
T ss_pred CeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCC----CcEEEEECCCCcEEEEEcCCCCcccCceeE
Confidence 99999999988888777 5 778899999999 99999999864 479999999999999888762 236777
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecc
Q 001336 567 VQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVES 646 (1097)
Q Consensus 567 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 646 (1097)
+.+. +++++++++.||.|++||+.+++.+..+..| ...|.+++| |+ +++++.||.|++|++. .+.
T Consensus 304 ~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~--~~~v~~~~~-~~---l~~~~~dg~i~~w~~~----~~~---- 368 (615)
T 1pgu_A 304 VVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGH--NKGITALTV-NP---LISGSYDGRIMEWSSS----SMH---- 368 (615)
T ss_dssp EEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCC--SSCEEEEET-TT---TEEEETTSCEEETTTT----EEE----
T ss_pred EEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCC--CCCEEEEEe-cC---cEEECCCCeEEEEEch----hhc----
Confidence 7775 8899999999999999999999999888865 678999999 88 9999999999999865 110
Q ss_pred cccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCc
Q 001336 647 RTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPS 726 (1097)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~ 726 (1097)
T Consensus 369 -------------------------------------------------------------------------------- 368 (615)
T 1pgu_A 369 -------------------------------------------------------------------------------- 368 (615)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCC
Q 001336 727 QCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPE 806 (1097)
Q Consensus 727 ~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~ 806 (1097)
..|...|.+++| +++..+++++.|+.+++|++.... ..
T Consensus 369 ---------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~--------------------------------~~ 406 (615)
T 1pgu_A 369 ---------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHE--------------------------------FG 406 (615)
T ss_dssp ---------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEE--------------------------------CS
T ss_pred ---------CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCc--------------------------------cc
Confidence 126678999999 678889999999999999765321 11
Q ss_pred CCeeEEEEccCCCEEEEEeCCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEEC-CCcEEEEEcccceEE-E
Q 001336 807 DAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME-DSSIQIYNVRVDEVK-T 884 (1097)
Q Consensus 807 ~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~-dg~v~vwd~~~~~~~-~ 884 (1097)
..+.+++++|++.+++++.++.+.+|+..+++.+..+. +...+.+++|+ +++|++++. |+.|++||+.+++.. .
T Consensus 407 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~ 482 (615)
T 1pgu_A 407 SQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFD 482 (615)
T ss_dssp SCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEE
T ss_pred CCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEeecCCCeEEEEECCCcccccc
Confidence 25789999999999998889999999999999998887 88899999998 579999999 999999999988766 7
Q ss_pred EecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCC-CCCCccCCeEEEEcC----------CCc
Q 001336 885 KLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNG-RTASALADTRVQFHL----------DQT 953 (1097)
Q Consensus 885 ~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~s~----------dg~ 953 (1097)
.+.+|...|++++|+|++++|++++.|+.|++||+.+++. +....+ |. ..|.+++|+| +++
T Consensus 483 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~h~---~~v~~~~~sp~~~~~~~~~~~~~ 554 (615)
T 1pgu_A 483 LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV-----KTSRWAFRT---SKINAISWKPAEKGANEEEIEED 554 (615)
T ss_dssp CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----EECCSCCCS---SCEEEEEECCCC------CCSCC
T ss_pred ccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc-----eeEeecCCC---CceeEEEEcCccccccccccCCC
Confidence 7889999999999999999999999999999999998653 333333 43 6799999999 999
Q ss_pred EEEEE-eCCeEEEEeCCCc-ceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCC
Q 001336 954 HLLAV-HETQIAIYEAPKL-ECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1014 (1097)
Q Consensus 954 ~l~~~-~d~~v~vwd~~~~-~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~ 1014 (1097)
+|+++ .|+.|++||+.++ +.+..+. +|...|++++|+||++ |++++.||+|++|++..
T Consensus 555 ~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 555 LVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEEETTSCEEEEESSCTTCCEEETT--SSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEEEEcCCCcEEEEECCCCceechhhh--cCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 99995 7899999999988 6666654 8999999999999999 99999999999999875
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-56 Score=562.53 Aligned_cols=601 Identities=11% Similarity=0.078 Sum_probs=444.4
Q ss_pred EEEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc
Q 001336 312 VVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 391 (1097)
Q Consensus 312 ~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 391 (1097)
....++|...|++++|+|+|+ +||+|+.||+|+||+..+.+... ...|...|.+++|+|
T Consensus 10 ~~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp 68 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK 68 (902)
T ss_dssp EEEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET
T ss_pred cccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC
Confidence 344567999999999999998 56999999999999988766543 234788999999999
Q ss_pred CCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee--------
Q 001336 392 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ-------- 463 (1097)
Q Consensus 392 d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~-------- 463 (1097)
|++|++++.|++|+|||+.+++.+.. +. |...|++++|+|+++ +|++|+.||.|++||+.++++.
T Consensus 69 -g~~L~S~s~D~~v~lWd~~~~~~~~~---~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~ 141 (902)
T 2oaj_A 69 -GIYLVVINAKDTVYVLSLYSQKVLTT---VF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ 141 (902)
T ss_dssp -TTEEEEEETTCEEEEEETTTCSEEEE---EE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHH
T ss_pred -CCEEEEEECcCeEEEEECCCCcEEEE---Ec-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceecccc
Confidence 88999999999999999999886653 43 778999999999999 8999999999999999988764
Q ss_pred ---EEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCC------------------CCceEEEEE
Q 001336 464 ---YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP------------------GHSSTMMAY 522 (1097)
Q Consensus 464 ---~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~ 522 (1097)
..+.+|.+.|.+++|++. ++..+++|+.||.| +||+++.+....+..+ ...|.+++|
T Consensus 142 ~~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f 219 (902)
T 2oaj_A 142 KSSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY 219 (902)
T ss_dssp HHHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE
T ss_pred ccccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE
Confidence 234679999999999763 23689999999999 9999988776666544 357999999
Q ss_pred ccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEE--ec---CC------------CCcceEEEEEc----CCC-CEEEEEe
Q 001336 523 SADGARLFSCGTNKEGESYLVEWNESEGAVKRT--YH---GL------------GKRSVGVVQFD----TTK-NRFLAAG 580 (1097)
Q Consensus 523 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~--~~---~~------------~~~~v~~~~~~----~~~-~~l~~~~ 580 (1097)
+|+|++|++++.|+ .|++||+++++++.. +. .| +...|.+++|+ |++ ..+++|+
T Consensus 220 spdg~~lasgs~Dg----~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~ 295 (902)
T 2oaj_A 220 HPNSLHIITIHEDN----SLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHK 295 (902)
T ss_dssp CTTSSEEEEEETTC----CEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred cCCCCEEEEEECCC----eEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCC
Confidence 99999999998754 699999999887654 21 12 12369999995 443 4567776
Q ss_pred CC-----CcEEEEECC------------------CCceEEEEecCCCCCCcceEEEcC----------CCCEEEEEECCC
Q 001336 581 DE-----FMIKFWDMD------------------NVNLLASIDADGGLQASPCIRFNK----------EGILLAVSTNDN 627 (1097)
Q Consensus 581 ~d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~s~----------~~~~l~s~~~dg 627 (1097)
.| +.+.+|++. +.+....+.. .+...|..+.+.+ +...+++++.||
T Consensus 296 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg 374 (902)
T 2oaj_A 296 SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL-PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNG 374 (902)
T ss_dssp CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC-SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTS
T ss_pred CCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEec-CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCC
Confidence 65 378899852 2233444432 1244677777755 344788999999
Q ss_pred cEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccc
Q 001336 628 GIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIA 707 (1097)
Q Consensus 628 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1097)
.|++|++.++.........+..... +..++ ...
T Consensus 375 ~l~~~~~~~g~~~~~~~~~~~~l~~-----------------------------~~~~v------------------~~~ 407 (902)
T 2oaj_A 375 EIETMLYPSGIFTDKASLFPQNLSW-----------------------------LRPLA------------------TTS 407 (902)
T ss_dssp CEEEEETTTCCEECCGGGSCGGGTT-----------------------------BTTBE------------------EEE
T ss_pred cEEEEECCCCCcccccccCCCcccc-----------------------------cCCCe------------------eEE
Confidence 9999999776322211111100000 00000 000
Q ss_pred cccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcc
Q 001336 708 DEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQL 787 (1097)
Q Consensus 708 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 787 (1097)
...+...++|+......... ..+..+|...+.+++|+|+++.|++++.|++|++||+..+...
T Consensus 408 ~~s~~~~~~w~~~~~~~~~~----~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~------------- 470 (902)
T 2oaj_A 408 MAASVPNKLWLGALSAAQNK----DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQ------------- 470 (902)
T ss_dssp EEEEEEHHHHHHHHHTTBCC----CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTT-------------
T ss_pred EEEEcCHHHHHHHHhcccCC----CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcccc-------------
Confidence 01112345566432111110 1233567888889999999999999999999999998754210
Q ss_pred cCCCCCccccccCC---CCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCC--------------------------
Q 001336 788 WQPPSGILMTNDIS---DTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTF-------------------------- 837 (1097)
Q Consensus 788 w~~~~~~~~~~~~~---~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~-------------------------- 837 (1097)
........+. +.+|...|.+++|+|||++||+|+ ||+|+||++.++
T Consensus 471 ----~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (902)
T 2oaj_A 471 ----DNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNT 546 (902)
T ss_dssp ----TTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGS
T ss_pred ----CCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCC
Confidence 0000000000 113889999999999999999999 999999999765
Q ss_pred -------------------ceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEE-----Eec-ccccC
Q 001336 838 -------------------KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKT-----KLK-GHQKR 892 (1097)
Q Consensus 838 -------------------~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~-----~l~-~h~~~ 892 (1097)
+++.++.+|.+.|++++||| +| +||+|+.|++|+|||+.++..+. .+. +|.+.
T Consensus 547 ~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~ 624 (902)
T 2oaj_A 547 NGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSAC 624 (902)
T ss_dssp SCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCC
T ss_pred ccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccc
Confidence 24678889999999999999 88 99999999999999998887664 233 89999
Q ss_pred eEEEEEe-----cCC---CEEEEEeCCCcEEEEEc---CCCcccceeeEeecCCCCC--CccCCeEEE-Ec---------
Q 001336 893 ITGLAFS-----NTL---NVLVSSGADSQLCVWST---DGWEKQASKFLTIPNGRTA--SALADTRVQ-FH--------- 949 (1097)
Q Consensus 893 V~~l~~s-----~dg---~~l~s~~~Dg~i~iwd~---~~~~~~~~~~~~~~~~~~~--~~~~v~~l~-~s--------- 949 (1097)
|++++|+ ||| .+|++++.|++|++||+ .+++... ...++.. +.+.|..+. |+
T Consensus 625 V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a 699 (902)
T 2oaj_A 625 VTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDV-----QLMDITNVTSKGPIHKIDAFSKETKSSCLA 699 (902)
T ss_dssp EEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEE-----EEEEEEECCSSCCCCEEEEEETTTCCBCBC
T ss_pred eEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEE-----EecCceecCCCCceEEEEeEecCCCCcccC
Confidence 9999999 886 89999999999999999 5655322 2222210 114455565 65
Q ss_pred -------------CCCcEEEEEeCCeEEEEeCCCcceeeeeeccCCCCCEEEE---E------EecCCCEEEEEecCCeE
Q 001336 950 -------------LDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHA---T------YSCDSQSIYVAFEEGSV 1007 (1097)
Q Consensus 950 -------------~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v---~------~s~dg~~l~s~s~Dg~v 1007 (1097)
+++..|++ .+..|+||++.++++..+.. +|.-.+.++ . |+++|..|++++.||+|
T Consensus 700 ~~~~~~~l~~~~~~~~~~l~~-~~~~ir~~~~~~~k~~~k~~--~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i 776 (902)
T 2oaj_A 700 TIPKMQNLSKGLCIPGIVLIT-GFDDIRLITLGKSKSTHKGF--KYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHL 776 (902)
T ss_dssp BHHHHHGGGGTCCCCEEEEEE-CSSEEEEECTTCCCEEEEEC--SSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEE
T ss_pred CHHHHhccCCCCCCCeEEEEE-eccceEEEeCccccceeeEc--ccceeeeEEEEEEeccccccccCceEEEEEeCCCcE
Confidence 45555554 48899999999999887764 555666666 5 78999999999999999
Q ss_pred EEEeCCCCceeeeeCCCC
Q 001336 1008 GVLTASTLRLRCRINPTA 1025 (1097)
Q Consensus 1008 ~vwd~~~~~~~~~~~~~~ 1025 (1097)
++|++.+++.+..+....
T Consensus 777 ~~~s~p~l~~~~~~~~~~ 794 (902)
T 2oaj_A 777 RVFTIPDFKEQMSEHIPF 794 (902)
T ss_dssp EEEETTTCCEEEEEECSS
T ss_pred EEEECcchHHHhhccCCc
Confidence 999999999988777443
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-55 Score=547.22 Aligned_cols=595 Identities=10% Similarity=0.089 Sum_probs=437.1
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 456 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 456 (1097)
..+|...|++++|+|++++||+|+.||+|+||+..+++... ...|...|.+++|+| ++ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 45899999999999999999999999999999998776443 235888999999999 77 799999999999999
Q ss_pred CCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCce-----------eeecCCCCceEEEEEccC
Q 001336 457 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR-----------VDYDAPGHSSTMMAYSAD 525 (1097)
Q Consensus 457 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~v~~~~~s~~ 525 (1097)
+.+++++..+. |...|++++| ++++++|++|+.||.|++||+++.... .....|...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~--sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDT--DASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEEC--CTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEE--CCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 99999999886 7789999998 456689999999999999999876542 123456679999999996
Q ss_pred C-CEEEEeeeCCCCCceEEEEeCCCCeeeEEecCC-----------------CCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 001336 526 G-ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL-----------------GKRSVGVVQFDTTKNRFLAAGDEFMIKF 587 (1097)
Q Consensus 526 ~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i 587 (1097)
+ ..+++++. ++.| +||+++++.++.+..+ +...|.+++|+|+|.+|++++.||.|++
T Consensus 163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 67777654 4468 9999999999888765 1237999999999999999999999999
Q ss_pred EECCCCceEEEEe-----cC-----------CCCCCcceEEEc----CCC-CEEEEEECCC-----cEEEEEcCCCceEE
Q 001336 588 WDMDNVNLLASID-----AD-----------GGLQASPCIRFN----KEG-ILLAVSTNDN-----GIKILANADGIRLL 641 (1097)
Q Consensus 588 wd~~~~~~~~~~~-----~~-----------~~~~~v~~v~~s----~~~-~~l~s~~~dg-----~i~iw~~~~~~~~~ 641 (1097)
||+.+++++.... .| .+...|++++|+ |++ .++++|+.|. .+++|++....
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~--- 314 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTP--- 314 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECC---
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCC---
Confidence 9999998876522 12 123469999995 443 5677787663 67777742110
Q ss_pred EEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccc
Q 001336 642 RTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTE 721 (1097)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~ 721 (1097)
...+++.+....+|+-.
T Consensus 315 --------------------------------------------------------------~~~~~s~~~~~~~~~~~- 331 (902)
T 2oaj_A 315 --------------------------------------------------------------RYSITSYEGMKNYYANP- 331 (902)
T ss_dssp --------------------------------------------------------------CGGGCCHHHHHHHHHSC-
T ss_pred --------------------------------------------------------------CccccchhhhhhhhcCc-
Confidence 00111222222222210
Q ss_pred cCCCceeeEeccCCCcCccceEEEEEcc----------CCceeeeeccCcEEEEeccCCCCCCcc---------Cc---c
Q 001336 722 ITEPSQCRSLRLPDNLTAMRVSRLIYTN----------SGLAILALASNAVHKLWKWPRNERNST---------GK---A 779 (1097)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~i~~l~~sp----------dg~~l~~~~~dg~i~vw~~~~~~~~~~---------~~---~ 779 (1097)
...+.+.. .+...|..+.+.+ +...+++++.||.+++|++..+..... +. .
T Consensus 332 ----~~~~~~~~---~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v 404 (902)
T 2oaj_A 332 ----KQMKIFPL---PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLA 404 (902)
T ss_dssp ----SEEEEECC---SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBE
T ss_pred ----cceEEEec---CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCe
Confidence 11111111 2456777888765 344688888999999999864421000 00 0
Q ss_pred ----ccccCCcccCCCC---CccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCcee--EEe------
Q 001336 780 ----TTNQAPQLWQPPS---GILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--TTF------ 843 (1097)
Q Consensus 780 ----~~~~~~~~w~~~~---~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~--~~~------ 843 (1097)
......++|+... +.. ...+.+ |...+..++|+||+++|++++ |++|++||+.++... ..+
T Consensus 405 ~~~~~s~~~~~~w~~~~~~~~~~-~~~l~G--~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~ 481 (902)
T 2oaj_A 405 TTSMAASVPNKLWLGALSAAQNK-DYLLKG--GVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSR 481 (902)
T ss_dssp EEEEEEEEEHHHHHHHHHTTBCC-CCSCCC--SBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHH
T ss_pred eEEEEEEcCHHHHHHHHhcccCC-CCcccC--CcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechh
Confidence 0000112232110 111 113444 778888899999999999999 999999999887431 111
Q ss_pred ---CCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccc----------------------------------------
Q 001336 844 ---MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD---------------------------------------- 880 (1097)
Q Consensus 844 ---~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~---------------------------------------- 880 (1097)
.+|...|.+++|+| ++++||+|+.||+|+||++.++
T Consensus 482 ~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (902)
T 2oaj_A 482 TLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG 560 (902)
T ss_dssp HTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTT
T ss_pred hcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCC
Confidence 17889999999999 9999999999999999999876
Q ss_pred -----eEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeec-CCCCCCccCCeEEEEc-----
Q 001336 881 -----EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIP-NGRTASALADTRVQFH----- 949 (1097)
Q Consensus 881 -----~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~s----- 949 (1097)
+++..+.+|.+.|++|+||||| +||+|+.|++|++||+.+........+... .+|. ..|++++|+
T Consensus 561 ~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~---~~V~sv~Fs~~~~~ 636 (902)
T 2oaj_A 561 VRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS---ACVTCIEFVIMEYG 636 (902)
T ss_dssp CSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC---CCEEEEEEEEEECT
T ss_pred CCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc---cceEEEEEEEEecC
Confidence 3477889999999999999999 999999999999999987542211011112 1444 679999999
Q ss_pred CCC---cEEEE-EeCCeEEEEeC---CCcceeeeeecc---CCCCCEEEEE-Ee----------------------cCCC
Q 001336 950 LDQ---THLLA-VHETQIAIYEA---PKLECLKQFVPR---EASGPITHAT-YS----------------------CDSQ 996 (1097)
Q Consensus 950 ~dg---~~l~~-~~d~~v~vwd~---~~~~~~~~~~~~---~h~~~v~~v~-~s----------------------~dg~ 996 (1097)
||| ++|++ +.|++|++||+ .+|++...+... .|.++|.+++ |+ ++|.
T Consensus 637 ~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 716 (902)
T 2oaj_A 637 DDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGI 716 (902)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEE
T ss_pred CCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeE
Confidence 886 78888 58999999999 788887777621 1357787777 66 5665
Q ss_pred EEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEE-EE------EcCCCCCEEEEEecCCcEEEEecCCCCc
Q 001336 997 SIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLV-IA------GNPTDPNQFALGLTDGGVYIIEPLEAEG 1069 (1097)
Q Consensus 997 ~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~-i~------~~p~~~~~l~s~~~Dg~v~~W~~~~~~~ 1069 (1097)
+|+++ +..|+||++.+++...... +|...+.+++ +. |++ ++..|++++.||+|++|++++.+.
T Consensus 717 ~l~~~--~~~ir~~~~~~~k~~~k~~-------~~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~ 786 (902)
T 2oaj_A 717 VLITG--FDDIRLITLGKSKSTHKGF-------KYPLAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKE 786 (902)
T ss_dssp EEEEC--SSEEEEECTTCCCEEEEEC-------SSCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEe--ccceEEEeCccccceeeEc-------ccceeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHH
Confidence 55554 7899999999998876653 2333344431 24 566 678999999999999999998887
Q ss_pred ccCCCCCC
Q 001336 1070 RWGTSPPN 1077 (1097)
Q Consensus 1070 ~~~~~~~~ 1077 (1097)
.-....|.
T Consensus 787 ~~~~~~~~ 794 (902)
T 2oaj_A 787 QMSEHIPF 794 (902)
T ss_dssp EEEEECSS
T ss_pred HhhccCCc
Confidence 66555555
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.5e-46 Score=474.83 Aligned_cols=556 Identities=16% Similarity=0.211 Sum_probs=420.4
Q ss_pred EEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc
Q 001336 313 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 391 (1097)
Q Consensus 313 ~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 391 (1097)
..++. |.+.|++++|||+|++ +|+|+.||.|+|||+.+++.+.. +.+|...|.+++|+|
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~-la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s~ 65 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPW-VLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFIA 65 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEG
T ss_pred ceeeecCCCceEEEEECCCCCE-EEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEeC
Confidence 44555 9999999999999995 58899999999999999887653 668999999999999
Q ss_pred CCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEeecCC
Q 001336 392 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHE 470 (1097)
Q Consensus 392 d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~ 470 (1097)
++++||+|+.||.|+|||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.|+.|++||+.++ .....+.+|.
T Consensus 66 ~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 140 (814)
T 3mkq_A 66 RKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHE 140 (814)
T ss_dssp GGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCC
Confidence 99999999999999999999987665 4788999999999999999 8999999999999999987 6778899999
Q ss_pred cCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCC-CceEEEEEcc--CCCEEEEeeeCCCCCceEEEEeC
Q 001336 471 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSA--DGARLFSCGTNKEGESYLVEWNE 547 (1097)
Q Consensus 471 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~ 547 (1097)
..|.+++|++. ++..+++++.||.|++||+........+..+. ..+..++|+| ++.++++++.+ +.|++||+
T Consensus 141 ~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~i~~~d~ 215 (814)
T 3mkq_A 141 HFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD----LTIKIWDY 215 (814)
T ss_dssp SCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT----SEEEEEET
T ss_pred CcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC----CEEEEEEC
Confidence 99999999651 55799999999999999998877777766555 7899999999 99999998754 47999999
Q ss_pred CCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCC--EEEEEEC
Q 001336 548 SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI--LLAVSTN 625 (1097)
Q Consensus 548 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~s~~~ 625 (1097)
.+++.+..+.+|.. .+.+++|+|+++++++++.||.|++||+.+++.+..+..+ ...+.+++|+|++. ++++++
T Consensus 216 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~- 291 (814)
T 3mkq_A 216 QTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG--LERSWCIATHPTGRKNYIASGF- 291 (814)
T ss_dssp TTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS--SSSEEEEEECTTCGGGEEEEEE-
T ss_pred CCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC--CCcEEEEEEccCCCceEEEEEe-
Confidence 99999999998876 8999999999999999999999999999999999998865 56899999999986 455554
Q ss_pred CCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcc
Q 001336 626 DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPK 705 (1097)
Q Consensus 626 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1097)
++.+.+|++..+.
T Consensus 292 ~~~~~~~~~~~~~------------------------------------------------------------------- 304 (814)
T 3mkq_A 292 DNGFTVLSLGNDE------------------------------------------------------------------- 304 (814)
T ss_dssp TTEEEEEECSCCS-------------------------------------------------------------------
T ss_pred CCCEEEEEcCCCC-------------------------------------------------------------------
Confidence 6678888765431
Q ss_pred cccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcE---EEEeccCCCCCCccCccccc
Q 001336 706 IADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAV---HKLWKWPRNERNSTGKATTN 782 (1097)
Q Consensus 706 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~---i~vw~~~~~~~~~~~~~~~~ 782 (1097)
..+.++|+|+.+++++.+.. +..-.+
T Consensus 305 -------------------------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------- 333 (814)
T 3mkq_A 305 -------------------------------------PTLSLDPVGKLVWSGGKNAAASDIFTAVI-------------- 333 (814)
T ss_dssp -------------------------------------CCEEECSSSEEEEECCTTSCTTCEEEEEC--------------
T ss_pred -------------------------------------ceeEECCCCCEEEECcccccceeeeeeec--------------
Confidence 12345566666665554321 000000
Q ss_pred cCCcccCCCCCccccc---cCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCC
Q 001336 783 QAPQLWQPPSGILMTN---DISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQD 859 (1097)
Q Consensus 783 ~~~~~w~~~~~~~~~~---~~~~~~h~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~ 859 (1097)
...|++..+..... .+. .+...+.+++|+|+|+++++++++.+.+|++....... .+.+.+++|+| +
T Consensus 334 --~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~sp-d 403 (814)
T 3mkq_A 334 --RGNEEVEQDEPLSLQTKELG--SVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVWGP-D 403 (814)
T ss_dssp --CSCCCCCSSSCBCCCCEEEC--CCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEECT-T
T ss_pred --ccccccccCccceeeeecCC--CCccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEEeC-C
Confidence 01123333322211 112 26678899999999999999999999999986554332 35688999999 8
Q ss_pred CCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCC---CEEEEEeCCCcEEEEEcCCCcccceeeEeecCCC
Q 001336 860 NNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTL---NVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGR 936 (1097)
Q Consensus 860 ~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg---~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 936 (1097)
++++|+++.+|.|++|+ .+.+|...+.+++|+|++ ..|++++.|+.|++||+.+++ .+.....+
T Consensus 404 g~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~-----~~~~~~~~ 470 (814)
T 3mkq_A 404 SNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGT-----LVRRIDVN 470 (814)
T ss_dssp SSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCC-----EEEEESSC
T ss_pred CCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCc-----EEEEEecC
Confidence 99999999999999996 345688889999999998 688999999999999999865 23333332
Q ss_pred CCCccCCeEEEEcCCCcEEEEE------eCCeEEEEeCCCcce------------------eeeeeccCCCCCEEEEEEe
Q 001336 937 TASALADTRVQFHLDQTHLLAV------HETQIAIYEAPKLEC------------------LKQFVPREASGPITHATYS 992 (1097)
Q Consensus 937 ~~~~~~v~~l~~s~dg~~l~~~------~d~~v~vwd~~~~~~------------------~~~~~~~~h~~~v~~v~~s 992 (1097)
. ..+.|+|||++|+++ .+..+.++....+.. ...+. .....|.+..|.
T Consensus 471 ~------~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~s~~w~ 542 (814)
T 3mkq_A 471 A------KDVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLY--ELSESITSGKWV 542 (814)
T ss_dssp E------EEEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEE--EECSCCSEEEEE
T ss_pred C------CEEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeee--EeccEEEeeEEe
Confidence 2 389999999999997 666677664432111 01110 002334455554
Q ss_pred cCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCC
Q 001336 993 CDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1066 (1097)
Q Consensus 993 ~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~ 1066 (1097)
+..++..+..+.+..+-......+.. ....++.+ .|.+ ++..++....++.++.|++..
T Consensus 543 --~~~~i~~t~~~~~~~~~~~~~~~~~~----------~~~~~~~~--~~~~-~~~~l~~~d~~~~~~~~~l~~ 601 (814)
T 3mkq_A 543 --GDVFIFTTATNRLNYFVGGKTYNLAH----------YTKEMYLL--GYLA-RDNKVYLADREVHVYGYEISL 601 (814)
T ss_dssp --TTEEEEECTTSEEEEEETTEEEEEEE----------CSSCCEEE--EEEG-GGTEEEEECTTCCEEEEECCH
T ss_pred --CCEEEEEcCCCeEEEEeCCeeEEEEE----------CCccEEEE--EEEe-cCCEEEEEcCCCCEEEEEECc
Confidence 33333333233343332111111111 12334433 5556 578888899999999999863
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.2e-45 Score=461.68 Aligned_cols=465 Identities=16% Similarity=0.198 Sum_probs=384.5
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 456 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 456 (1097)
+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+. .+.+|..+|.+++|+|+++ +|++++.|+.|++||
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 67899999999999999999999999999999999987665 4778999999999999999 899999999999999
Q ss_pred CCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCC-CceeeecCCCCceEEEEEcc-CCCEEEEeee
Q 001336 457 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSA-DGARLFSCGT 534 (1097)
Q Consensus 457 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 534 (1097)
+.+++.+..+.+|.+.|.+++|+ +++.+|++++.||.|++||+++. .....+..+...|.+++|+| +++.+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVH--PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEEC--SSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcEEEEEecCCCCEEEEEEe--CCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 99999999999999999999994 56689999999999999999886 45566777888999999999 8889999876
Q ss_pred CCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEE
Q 001336 535 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT--TKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR 612 (1097)
Q Consensus 535 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 612 (1097)
+ +.|++||+.++.....+..+....+.+++|+| ++.++++++.||.|++||+.+++.+..+..| ...|.+++
T Consensus 162 d----g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~v~~~~ 235 (814)
T 3mkq_A 162 D----RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH--MSNVSFAV 235 (814)
T ss_dssp T----SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC--SSCEEEEE
T ss_pred C----CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC--CCCEEEEE
Confidence 4 47999999999888888877755899999999 9999999999999999999999999998865 66899999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccC
Q 001336 613 FNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM 692 (1097)
Q Consensus 613 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1097)
|+|++.++++++.||.|++|+..++ .....+.
T Consensus 236 ~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~----------------------------------------------- 267 (814)
T 3mkq_A 236 FHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLN----------------------------------------------- 267 (814)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTC-SEEEEEC-----------------------------------------------
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCC-cEEEEee-----------------------------------------------
Confidence 9999999999999999999999876 3333221
Q ss_pred CCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCcee-eeeccCcEEEEeccCCC
Q 001336 693 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAI-LALASNAVHKLWKWPRN 771 (1097)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l-~~~~~dg~i~vw~~~~~ 771 (1097)
.+...+.+++|+|+|..+ ++++.++.+.+|++..
T Consensus 268 --------------------------------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 302 (814)
T 3mkq_A 268 --------------------------------------------VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN- 302 (814)
T ss_dssp --------------------------------------------CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC-
T ss_pred --------------------------------------------cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC-
Confidence 145678999999999853 5566677777775431
Q ss_pred CCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCe---EE------EEEcCCCce--
Q 001336 772 ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGK---IS------LFNMMTFKT-- 839 (1097)
Q Consensus 772 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~---i~------iwd~~~~~~-- 839 (1097)
....+.++|+|+.+++++ +.. +. .|++..+..
T Consensus 303 ------------------------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (814)
T 3mkq_A 303 ------------------------------------DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLS 346 (814)
T ss_dssp ------------------------------------CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBC
T ss_pred ------------------------------------CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccce
Confidence 123578899999998876 321 22 233333332
Q ss_pred --eEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001336 840 --MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917 (1097)
Q Consensus 840 --~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iw 917 (1097)
...+..+...+.+++|+| +++++++++ |+.+.+|++...... +.+.+.+++|+||++++++++.|+.|++|
T Consensus 347 ~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg~~la~~~~~g~v~l~ 419 (814)
T 3mkq_A 347 LQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDSNSYALIDETGQIKYY 419 (814)
T ss_dssp CCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTSSCEEEECTTCCEEEE
T ss_pred eeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCCCeEEEEeCCCcEEEE
Confidence 233455677899999999 999999998 899999998765432 35678899999999999999999999999
Q ss_pred EcCCCcccceeeEeecCCCCCCccCCeEEEEcCCC---cEEEE-EeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEec
Q 001336 918 STDGWEKQASKFLTIPNGRTASALADTRVQFHLDQ---THLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSC 993 (1097)
Q Consensus 918 d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg---~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~ 993 (1097)
+.-. ++. ..+..+.|+||| .+|++ +.++.|++||+.+++.+..+. .|.. .++|+|
T Consensus 420 ~~~~-------------~~~---~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~--~~~~---~v~~s~ 478 (814)
T 3mkq_A 420 KNFK-------------EVT---SWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRID--VNAK---DVIWSD 478 (814)
T ss_dssp ETTE-------------ECT---TCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEES--SCEE---EEEECT
T ss_pred ECCC-------------Ccc---ceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEe--cCCC---EEEEcC
Confidence 6332 111 347788999998 35555 799999999999999888876 4433 999999
Q ss_pred CCCEEEEE------ecCCeEEEEe
Q 001336 994 DSQSIYVA------FEEGSVGVLT 1011 (1097)
Q Consensus 994 dg~~l~s~------s~Dg~v~vwd 1011 (1097)
||++|+++ +.++.+.+|.
T Consensus 479 dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 479 NGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp TSSEEEEEECCCSSCSCSEEEEEE
T ss_pred CCCEEEEEEcCcccCCceEEEEEe
Confidence 99999999 6666555554
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.1e-40 Score=377.88 Aligned_cols=284 Identities=20% Similarity=0.378 Sum_probs=263.0
Q ss_pred ecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEE
Q 001336 317 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 396 (1097)
Q Consensus 317 ~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 396 (1097)
+|...|++++|+|+++ ++++|+.||+|+|||+.+++.... +.+|...|.+++|+|++++|
T Consensus 106 gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~~~~l 165 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSGKLL 165 (410)
T ss_dssp CCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred ccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCCCCEE
Confidence 4899999999999998 569999999999999999887653 77899999999999999999
Q ss_pred EEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEE
Q 001336 397 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 476 (1097)
Q Consensus 397 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 476 (1097)
++|+.|++|+|||+.+++++. .+.+|...|.+++|+|+++ +|++|+.|++|++||+.++.++.++.+|...|.++
T Consensus 166 ~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~ 240 (410)
T 1vyh_C 166 ASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240 (410)
T ss_dssp EEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEE
Confidence 999999999999999887665 5789999999999999999 89999999999999999999999999999999999
Q ss_pred eecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccC--------------------CCEEEEeeeCC
Q 001336 477 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD--------------------GARLFSCGTNK 536 (1097)
Q Consensus 477 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~~~ 536 (1097)
++ .+++.+|++++.|++|++||+.+......+..+...|.+++|+|+ +.+|++++.|
T Consensus 241 ~~--~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D- 317 (410)
T 1vyh_C 241 RP--NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD- 317 (410)
T ss_dssp EE--CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT-
T ss_pred EE--CCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC-
Confidence 88 556789999999999999999999888888889999999999996 6789998864
Q ss_pred CCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCC
Q 001336 537 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 616 (1097)
Q Consensus 537 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 616 (1097)
+.|++||+.++.++..+.+|.. .|.+++|+|++.+|++++.||.|++||+.+++++..+..| ...|.+++|+|+
T Consensus 318 ---~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~ 391 (410)
T 1vyh_C 318 ---KTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH--EHFVTSLDFHKT 391 (410)
T ss_dssp ---SEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC--SSCEEEEEECSS
T ss_pred ---CeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC--CCcEEEEEEcCC
Confidence 4799999999999999999887 8999999999999999999999999999999999999866 668999999999
Q ss_pred CCEEEEEECCCcEEEEEc
Q 001336 617 GILLAVSTNDNGIKILAN 634 (1097)
Q Consensus 617 ~~~l~s~~~dg~i~iw~~ 634 (1097)
+.+|++|+.||+|++|+.
T Consensus 392 ~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 392 APYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSCEEEEETTSEEEEEC-
T ss_pred CCEEEEEeCCCcEEEEeC
Confidence 999999999999999985
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.5e-39 Score=355.62 Aligned_cols=294 Identities=16% Similarity=0.195 Sum_probs=262.2
Q ss_pred eEEEEee-cCCCeeEEEEccCCC---eEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEE
Q 001336 311 TVVMTLN-QGSAVKSMDFHPVQQ---ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNR 386 (1097)
Q Consensus 311 ~~~~~~~-h~~~V~~v~fspdg~---~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 386 (1097)
.+...+. |.+.|++++|+|+++ .+|++|+.|++|+|||+..++..... .+.+|...|.+
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~-----------------~l~gh~~~v~~ 85 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQW-----------------SLEGHQLGVVS 85 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEE-----------------EECCCSSCEEE
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeee-----------------eeccCCCCEEE
Confidence 3344444 999999999998632 36799999999999999876543211 26799999999
Q ss_pred EEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEe
Q 001336 387 VMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 466 (1097)
Q Consensus 387 v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 466 (1097)
++|+|++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++||+.+++....+
T Consensus 86 ~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~~ 160 (321)
T 3ow8_A 86 VDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSL 160 (321)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEEe
Confidence 9999999999999999999999999998665 4778899999999999999 8999999999999999999999999
Q ss_pred ecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEe
Q 001336 467 EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWN 546 (1097)
Q Consensus 467 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 546 (1097)
..|...|.+++| .+++++|++++.||.|++||+++++....+..+...|.+++|+|++++|++++.|+ .|++||
T Consensus 161 ~~~~~~v~~~~~--spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg----~i~iwd 234 (321)
T 3ow8_A 161 DTRGKFILSIAY--SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG----YIKIYD 234 (321)
T ss_dssp ECSSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTS----CEEEEE
T ss_pred cCCCceEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCC----eEEEEE
Confidence 999999999999 55678999999999999999999888888888888999999999999999998644 699999
Q ss_pred CCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECC
Q 001336 547 ESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 626 (1097)
Q Consensus 547 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d 626 (1097)
+++++....+.+|.. .|.+++|+|++.+|++++.|+.|++||+.+++++..+..| ...|.+++|+|++.+|++++.|
T Consensus 235 ~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h--~~~v~~v~~s~~g~~l~s~~~d 311 (321)
T 3ow8_A 235 VQHANLAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH--QDQVWGVKYNGNGSKIVSVGDD 311 (321)
T ss_dssp TTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETT
T ss_pred CCCcceeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEEEeCC
Confidence 999999999999987 8999999999999999999999999999999999998865 6789999999999999999999
Q ss_pred CcEEEEEcC
Q 001336 627 NGIKILANA 635 (1097)
Q Consensus 627 g~i~iw~~~ 635 (1097)
|.|++||..
T Consensus 312 ~~i~vwd~p 320 (321)
T 3ow8_A 312 QEIHIYDCP 320 (321)
T ss_dssp CCEEEEECC
T ss_pred CeEEEEeCC
Confidence 999999963
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.6e-38 Score=355.19 Aligned_cols=293 Identities=18% Similarity=0.300 Sum_probs=260.9
Q ss_pred ceEEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEE
Q 001336 310 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 388 (1097)
Q Consensus 310 ~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 388 (1097)
.....++. |...|++++|+|||++ |++|+.||+|+|||+.+++.+.. +..|...|.+++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~-l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~ 104 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRL-LLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA 104 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSE-EEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCE-EEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEE
Confidence 34556666 9999999999999994 68999999999999998877653 567899999999
Q ss_pred EccCCCEEEEEECCCEEEEEEccCCee-eeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEee
Q 001336 389 WSPDGTLFGVAYSKHIVHLYTYHGGDE-LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE 467 (1097)
Q Consensus 389 ~spd~~~las~~~dg~i~iwd~~~~~~-~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 467 (1097)
|+|++++|++|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++++..+.
T Consensus 105 ~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp ECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEc
Confidence 999999999999999999999987642 223345789999999999998875 8999999999999999999999999
Q ss_pred cCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeC
Q 001336 468 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 547 (1097)
Q Consensus 468 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 547 (1097)
+|.+.|.+++|+ +++.++++|+.|++|++||+++......+..|...|.+++|+|++++|++++.|+ .|++||+
T Consensus 182 ~h~~~v~~~~~~--~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~----~v~iwd~ 255 (340)
T 1got_B 182 GHTGDVMSLSLA--PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA----TCRLFDL 255 (340)
T ss_dssp CCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEEEEET
T ss_pred CCCCceEEEEEC--CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC----cEEEEEC
Confidence 999999999995 4668999999999999999999988888888999999999999999999998654 6999999
Q ss_pred CCCeeeEEecCCC-CcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECC
Q 001336 548 SEGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 626 (1097)
Q Consensus 548 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d 626 (1097)
++++.+..+.... ...+.+++|+|++++|++|+.||.|++||+.+++.+..+.+| ...|.+++|+|++.+|++|+.|
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h--~~~v~~~~~s~dg~~l~s~s~D 333 (340)
T 1got_B 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH--DNRVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECTTSSCEEEEETT
T ss_pred CCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecC--CCcEEEEEEcCCCCEEEEEcCC
Confidence 9998877775432 236899999999999999999999999999999999998866 6789999999999999999999
Q ss_pred CcEEEEE
Q 001336 627 NGIKILA 633 (1097)
Q Consensus 627 g~i~iw~ 633 (1097)
+.|+|||
T Consensus 334 ~~i~iWd 340 (340)
T 1got_B 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred ccEEecC
Confidence 9999996
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.4e-38 Score=355.36 Aligned_cols=295 Identities=15% Similarity=0.237 Sum_probs=262.2
Q ss_pred eEEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEE
Q 001336 311 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 389 (1097)
Q Consensus 311 ~~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 389 (1097)
....++. |...|++++|+|++++ |++|+.||+|+|||..+++.... +..|...|.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~-l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 114 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRR-IVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAY 114 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEE
Confidence 4455666 9999999999999984 69999999999999988876553 4568889999999
Q ss_pred ccCCCEEEEEECCCEEEEEEccCCee---eeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEe
Q 001336 390 SPDGTLFGVAYSKHIVHLYTYHGGDE---LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 466 (1097)
Q Consensus 390 spd~~~las~~~dg~i~iwd~~~~~~---~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 466 (1097)
+|+|++||+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .|++++.|++|++||+.+++++.++
T Consensus 115 sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 99999999999999999999865321 122235778999999999999999 7999999999999999999999999
Q ss_pred ecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEe
Q 001336 467 EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWN 546 (1097)
Q Consensus 467 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 546 (1097)
.+|...|.++++++.+++.+|++|+.||+|++||++++.....+..|...|.+++|+|++++|++++.|+ .|++||
T Consensus 193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~----~v~lwd 268 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDA----TCRLYD 268 (354)
T ss_dssp ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEEEEE
T ss_pred cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCC----eEEEEE
Confidence 9999999999998887889999999999999999999988888888999999999999999999998654 699999
Q ss_pred CCCCeeeEEecCCC-CcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEEC
Q 001336 547 ESEGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN 625 (1097)
Q Consensus 547 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~ 625 (1097)
++.++.+..+..+. ...+.+++|+|++.+|++++.|+.|++||+.+++.+..+..| ...|.+++|+|++.+|++|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h--~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH--ENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC--SSCEEEEEECTTSSCEEEEET
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC--CCcEEEEEECCCCCEEEEEcC
Confidence 99988877776542 236789999999999999999999999999999999888765 778999999999999999999
Q ss_pred CCcEEEEE
Q 001336 626 DNGIKILA 633 (1097)
Q Consensus 626 dg~i~iw~ 633 (1097)
||+|++|+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999995
No 17
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.3e-38 Score=349.97 Aligned_cols=289 Identities=16% Similarity=0.255 Sum_probs=259.6
Q ss_pred cCCCCCCeEEEEEccC----CCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcE
Q 001336 377 SSDYTASVNRVMWSPD----GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 452 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd----~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i 452 (1097)
+.+|.+.|++++|+|+ +.+|++|+.|++|+||++.+++. .....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 5789999999999985 67999999999999999988763 23345889999999999999999 89999999999
Q ss_pred EEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEe
Q 001336 453 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC 532 (1097)
Q Consensus 453 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 532 (1097)
++||+.+++++..+..|...+.+++| .+++++|++++.||.|++|++++......+..+...+.+++|+|++++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~--spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAF--SPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEE--CTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEE--CCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 99999999999999999999999998 5567899999999999999999998888888888899999999999999999
Q ss_pred eeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEE
Q 001336 533 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR 612 (1097)
Q Consensus 533 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 612 (1097)
+.++ .|++||+++++.+..+.+|.. .|.+++|+|++++|++++.|+.|++||+.+++.+..+..| ...|.+++
T Consensus 183 ~~dg----~i~iwd~~~~~~~~~~~~h~~-~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~ 255 (321)
T 3ow8_A 183 AIDG----IINIFDIATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH--ASWVLNVA 255 (321)
T ss_dssp ETTS----CEEEEETTTTEEEEEECCCSS-CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC--SSCEEEEE
T ss_pred cCCC----eEEEEECCCCcEEEEEcccCC-ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC--CCceEEEE
Confidence 8654 699999999999999999887 8999999999999999999999999999999999888865 67899999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccC
Q 001336 613 FNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM 692 (1097)
Q Consensus 613 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1097)
|+|++.+|++++.|++|++||+.++ ..+..+.
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~----------------------------------------------- 287 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGTR-TCVHTFF----------------------------------------------- 287 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTT-EEEEEEC-----------------------------------------------
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCC-EEEEEEc-----------------------------------------------
Confidence 9999999999999999999999877 4444332
Q ss_pred CCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccC
Q 001336 693 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWP 769 (1097)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~ 769 (1097)
+|...|.+++|+|+++.|++++.||.|++||++
T Consensus 288 --------------------------------------------~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 288 --------------------------------------------DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp --------------------------------------------CCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred --------------------------------------------CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 266789999999999999999999999999864
No 18
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-38 Score=364.42 Aligned_cols=286 Identities=20% Similarity=0.317 Sum_probs=260.5
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 456 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 456 (1097)
+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++... .+.+|...|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 67999999999999999999999999999999999987654 5889999999999999999 899999999999999
Q ss_pred CCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCC
Q 001336 457 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 536 (1097)
Q Consensus 457 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 536 (1097)
+.+++++.++.+|...|.+++|++ ++.+|++++.|++|++||++++.....+..|...|.++.++|+++++++++.|+
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~ 256 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 256 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCC
Confidence 999999999999999999999954 568999999999999999999998888889999999999999999999998654
Q ss_pred CCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCC--------------------CCEEEEEeCCCcEEEEECCCCceE
Q 001336 537 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT--------------------KNRFLAAGDEFMIKFWDMDNVNLL 596 (1097)
Q Consensus 537 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~~~~~~ 596 (1097)
.|++||+.+++....+.+|.. .|.+++|+|+ +.+|++|+.|+.|++||+.+++++
T Consensus 257 ----~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 257 ----TVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp ----CEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred ----eEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 699999999999999999887 8999999996 678999999999999999999999
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccc
Q 001336 597 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVG 676 (1097)
Q Consensus 597 ~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1097)
..+.+| ...|.+++|+|++.+|++++.||.|++||+.++ +.+..+.
T Consensus 332 ~~~~~h--~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~------------------------------- 377 (410)
T 1vyh_C 332 MTLVGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLN------------------------------- 377 (410)
T ss_dssp EEEECC--SSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEE-------------------------------
T ss_pred EEEECC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEc-------------------------------
Confidence 999866 668999999999999999999999999998765 2222221
Q ss_pred cccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeee
Q 001336 677 TSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILA 756 (1097)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~ 756 (1097)
+|...|.+++|+|++.+|++
T Consensus 378 ------------------------------------------------------------~h~~~v~~l~~~~~~~~l~s 397 (410)
T 1vyh_C 378 ------------------------------------------------------------AHEHFVTSLDFHKTAPYVVT 397 (410)
T ss_dssp ------------------------------------------------------------CCSSCEEEEEECSSSSCEEE
T ss_pred ------------------------------------------------------------CCCCcEEEEEEcCCCCEEEE
Confidence 26778999999999999999
Q ss_pred eccCcEEEEecc
Q 001336 757 LASNAVHKLWKW 768 (1097)
Q Consensus 757 ~~~dg~i~vw~~ 768 (1097)
++.||.|++|++
T Consensus 398 gs~D~~i~vW~~ 409 (410)
T 1vyh_C 398 GSVDQTVKVWEC 409 (410)
T ss_dssp EETTSEEEEEC-
T ss_pred EeCCCcEEEEeC
Confidence 999999999974
No 19
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.6e-38 Score=344.06 Aligned_cols=291 Identities=18% Similarity=0.334 Sum_probs=253.1
Q ss_pred EEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEc
Q 001336 312 VVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 390 (1097)
Q Consensus 312 ~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 390 (1097)
...++. |.+.|++++|+|+|++ +++|+.||+|+|||+.++..+.. +.+|...|.+++|+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~-l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~~ 64 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPW-VLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKFI 64 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEE
T ss_pred eEEeecCCCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEEe
Confidence 345566 9999999999999995 58999999999999999876653 56799999999999
Q ss_pred cCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEeecC
Q 001336 391 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGH 469 (1097)
Q Consensus 391 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h 469 (1097)
|++++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||+.++ .....+.+|
T Consensus 65 ~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h 139 (304)
T 2ynn_A 65 ARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (304)
T ss_dssp GGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCC
T ss_pred CCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhccc
Confidence 999999999999999999999988665 5889999999999999999 8999999999999999987 455788999
Q ss_pred CcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeec-CCCCceEEEEEcc--CCCEEEEeeeCCCCCceEEEEe
Q 001336 470 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-APGHSSTMMAYSA--DGARLFSCGTNKEGESYLVEWN 546 (1097)
Q Consensus 470 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd 546 (1097)
...|.+++|++. ++..|++|+.|++|++||+........+. .+...+..+.|+| ++.+|++++.| +.|++||
T Consensus 140 ~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D----~~i~iWd 214 (304)
T 2ynn_A 140 EHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD----LTIKIWD 214 (304)
T ss_dssp CSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT----SEEEEEE
T ss_pred CCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC----CeEEEEe
Confidence 999999999653 44799999999999999998777665554 3446788899976 77899999864 4799999
Q ss_pred CCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCC--EEEEEE
Q 001336 547 ESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI--LLAVST 624 (1097)
Q Consensus 547 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~s~~ 624 (1097)
+++++++..+.+|.. .|.+++|+|++.+|++++.||.|++||..+++++..+..+ ...+.+++|+|++. ++++|+
T Consensus 215 ~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~asg~ 291 (304)
T 2ynn_A 215 YQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG--LERSWCIATHPTGRKNYIASGF 291 (304)
T ss_dssp TTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS--SSSEEEEEECTTCGGGCEEEEE
T ss_pred CCCCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC--CccEEEEEECCCCCceEEEEec
Confidence 999999999999987 8999999999999999999999999999999999999865 66899999999874 577777
Q ss_pred CCCcEEEEEcCC
Q 001336 625 NDNGIKILANAD 636 (1097)
Q Consensus 625 ~dg~i~iw~~~~ 636 (1097)
+| .+.+|++.+
T Consensus 292 ~~-g~~~~~~~~ 302 (304)
T 2ynn_A 292 DN-GFTVLSLGN 302 (304)
T ss_dssp TT-EEEEEECC-
T ss_pred CC-ceEEEEecc
Confidence 66 467777654
No 20
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7e-38 Score=346.31 Aligned_cols=300 Identities=18% Similarity=0.247 Sum_probs=257.3
Q ss_pred eEEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEE
Q 001336 311 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 389 (1097)
Q Consensus 311 ~~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 389 (1097)
.+..++. |.+.|++++|+|++..+|++|+.|++|++||+..........+ ..+.+|...|.+++|
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~--------------~~~~~h~~~v~~~~~ 73 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV--------------RSFKGHSHIVQDCTL 73 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEE--------------EEEECCSSCEEEEEE
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccc--------------eEEeCCcccEEEEEE
Confidence 3445666 9999999999998766789999999999999975433211111 126789999999999
Q ss_pred ccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecC
Q 001336 390 SPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH 469 (1097)
Q Consensus 390 spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 469 (1097)
+|++++|++|+.|++|+|||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||++ ++++..+.+|
T Consensus 74 s~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h 147 (319)
T 3frx_A 74 TADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGH 147 (319)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCC
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEecc
Confidence 9999999999999999999999998665 5889999999999999999 89999999999999985 6778889999
Q ss_pred CcCeEEEeecccC----CccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEE
Q 001336 470 ESPVYSICPHHKE----NIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 545 (1097)
Q Consensus 470 ~~~v~~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 545 (1097)
...|.++++.+.. ++..+++++.|+.|++||++.......+..|...|.+++|+|++++|++++.| +.|++|
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d----g~i~iw 223 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKD----GEIMLW 223 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETT----CEEEEE
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCC----CeEEEE
Confidence 9999999997643 34689999999999999999888888888899999999999999999999864 479999
Q ss_pred eCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC------CCCCCcceEEEcCCCCE
Q 001336 546 NESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD------GGLQASPCIRFNKEGIL 619 (1097)
Q Consensus 546 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~v~~s~~~~~ 619 (1097)
|+.+++.+..+..+. .+.+++|+|++.++++++.+ .+++|+++.+..+..+..+ .+...+.+++|+|+|++
T Consensus 224 d~~~~~~~~~~~~~~--~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 300 (319)
T 3frx_A 224 NLAAKKAMYTLSAQD--EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQT 300 (319)
T ss_dssp ETTTTEEEEEEECCS--CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSE
T ss_pred ECCCCcEEEEecCCC--cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCE
Confidence 999999999887653 79999999999999888765 5999999988877776532 12446789999999999
Q ss_pred EEEEECCCcEEEEEcCCC
Q 001336 620 LAVSTNDNGIKILANADG 637 (1097)
Q Consensus 620 l~s~~~dg~i~iw~~~~~ 637 (1097)
|++|+.||.|++|++.++
T Consensus 301 l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 301 LFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEETTSCEEEEEEEEC
T ss_pred EEEeecCceEEEEEEeec
Confidence 999999999999998754
No 21
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.3e-39 Score=359.31 Aligned_cols=313 Identities=16% Similarity=0.193 Sum_probs=231.7
Q ss_pred cccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeecc------CcEEEEeccCCCCCCccC
Q 001336 704 PKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS------NAVHKLWKWPRNERNSTG 777 (1097)
Q Consensus 704 ~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~------dg~i~vw~~~~~~~~~~~ 777 (1097)
..+.+..+.....|++.... ...|...|.+++|+|||++|++++. |+.+++|+..
T Consensus 18 ~~~~~~g~~~~~~w~~p~~~-----------p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~-------- 78 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVTA-----------PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDP-------- 78 (357)
T ss_dssp ---------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSC--------
T ss_pred eEEecCCCccccccCCCCCC-----------cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECC--------
Confidence 34455556777888775211 1358899999999999999999998 4556665443
Q ss_pred ccccccCCcccCCCCCcccccc-CCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEcCCCceeE----EeCCCCCCeEE
Q 001336 778 KATTNQAPQLWQPPSGILMTND-ISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMT----TFMPPPPAATF 852 (1097)
Q Consensus 778 ~~~~~~~~~~w~~~~~~~~~~~-~~~~~h~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~----~~~~~~~~i~~ 852 (1097)
++...... .....|...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++
T Consensus 79 --------------~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~ 144 (357)
T 4g56_B 79 --------------EGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKT 144 (357)
T ss_dssp --------------C---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEE
T ss_pred --------------CCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEE
Confidence 33221111 111137889999999999988776669999999998876543 34578999999
Q ss_pred EEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCC-EEEEEeCCCcEEEEEcCCCcccceeeEe
Q 001336 853 LAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLN-VLVSSGADSQLCVWSTDGWEKQASKFLT 931 (1097)
Q Consensus 853 l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~-~l~s~~~Dg~i~iwd~~~~~~~~~~~~~ 931 (1097)
++|+| ++++|++|+.|+.|++||+.+++++..+.+|...|++++|++++. ++++++.|++|++||+.+++..... .
T Consensus 145 v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~--~ 221 (357)
T 4g56_B 145 LSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI--D 221 (357)
T ss_dssp EEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC--C
T ss_pred EEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee--e
Confidence 99999 899999999999999999999999999999999999999999885 7899999999999999886633211 1
Q ss_pred ecCCCCCCccCCeEEEEcCCC-cEEEE-EeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCC-CEEEEEecCCeEE
Q 001336 932 IPNGRTASALADTRVQFHLDQ-THLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDS-QSIYVAFEEGSVG 1008 (1097)
Q Consensus 932 ~~~~~~~~~~~v~~l~~s~dg-~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg-~~l~s~s~Dg~v~ 1008 (1097)
. ..+ ...+.+++|+|++ .+|++ +.|+.|++||+.+++.+..+. +|...|++++|+|++ ++|++++.|++|+
T Consensus 222 ~-~~~---~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasgs~D~~i~ 295 (357)
T 4g56_B 222 F-CAS---DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA--VHSQNITGLAYSYHSSPFLASISEDCTVA 295 (357)
T ss_dssp C-TTC---CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC--CCSSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred e-ccc---cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe--ccceeEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 1 111 1468999999985 56776 478999999999999888876 889999999999998 5799999999999
Q ss_pred EEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCCC
Q 001336 1009 VLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1068 (1097)
Q Consensus 1009 vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~~ 1068 (1097)
|||+.+++.+..+ +|.+.|+++ +|+|.++.+|++|+.||+|++|++....
T Consensus 296 iwd~~~~~~~~~~--------~H~~~V~~v--afsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 296 VLDADFSEVFRDL--------SHRDFVTGV--AWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EECTTSCEEEEEC--------CCSSCEEEE--EECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EEECCCCcEeEEC--------CCCCCEEEE--EEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 9999998876433 588999876 8999889999999999999999997654
No 22
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.8e-37 Score=346.59 Aligned_cols=286 Identities=16% Similarity=0.228 Sum_probs=256.8
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 456 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 456 (1097)
+.+|.+.|++++|+||+++|++|+.||+|+|||+.+++.+. .+..|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence 78999999999999999999999999999999999987655 4778999999999999999 899999999999999
Q ss_pred CCCC----ceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEe
Q 001336 457 AVTG----TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC 532 (1097)
Q Consensus 457 ~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 532 (1097)
+.++ +....+.+|.+.|.++.|.++ ..+++++.|++|++||++++.....+..|...|.+++|+|++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCC---CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 9876 355678899999999998543 358999999999999999988888888899999999999999999999
Q ss_pred eeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEE
Q 001336 533 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR 612 (1097)
Q Consensus 533 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 612 (1097)
+.|+ .|++||++++..+..+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..+.....|.+++
T Consensus 203 ~~d~----~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 203 ACDA----SAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp ETTS----CEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred eCCC----cEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE
Confidence 8654 699999999999999999887 89999999999999999999999999999999888876555556799999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccC
Q 001336 613 FNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM 692 (1097)
Q Consensus 613 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1097)
|+|++.+|++|+.||.|++||+.++ .....+.
T Consensus 278 ~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~~----------------------------------------------- 309 (340)
T 1got_B 278 FSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLA----------------------------------------------- 309 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTC-CEEEEEE-----------------------------------------------
T ss_pred ECCCCCEEEEECCCCeEEEEEcccC-cEeeEee-----------------------------------------------
Confidence 9999999999999999999998776 2332222
Q ss_pred CCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEec
Q 001336 693 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 767 (1097)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~ 767 (1097)
+|...|.+++|+|+|.+|++++.||.|++|+
T Consensus 310 --------------------------------------------~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 310 --------------------------------------------GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp --------------------------------------------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred --------------------------------------------cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 3778899999999999999999999999995
No 23
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=346.58 Aligned_cols=303 Identities=17% Similarity=0.259 Sum_probs=248.9
Q ss_pred ceEEEEee-cCC-CeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEE
Q 001336 310 KTVVMTLN-QGS-AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 387 (1097)
Q Consensus 310 ~~~~~~~~-h~~-~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 387 (1097)
..++.++. |.. .|++++|+|+|++ ||+|+.|++|+|||+.++....... ...+|...|.++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~-las~~~D~~i~iw~~~~~~~~~~~~----------------~~~~h~~~v~~~ 67 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTL-LASCGGDRRIRIWGTEGDSWICKSV----------------LSEGHQRTVRKV 67 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSC-EEEEETTSCEEEEEEETTEEEEEEE----------------ECSSCSSCEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCE-EEEEcCCCeEEEEEcCCCcceeeee----------------eccccCCcEEEE
Confidence 34566666 776 9999999999995 5899999999999998875432111 246899999999
Q ss_pred EEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCc---eeE
Q 001336 388 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT---KQY 464 (1097)
Q Consensus 388 ~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~---~~~ 464 (1097)
+|+|++++||+|+.|++|+||++.++. ......+.+|...|.+++|+|+++ +|++|+.|++|++||+.++. ++.
T Consensus 68 ~~sp~g~~l~s~s~D~~v~iw~~~~~~-~~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~ 144 (345)
T 3fm0_A 68 AWSPCGNYLASASFDATTCIWKKNQDD-FECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVS 144 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEECCC--EEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEEEccCCC-eEEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEE
Confidence 999999999999999999999998765 233446889999999999999999 89999999999999998763 466
Q ss_pred EeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCc--eeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceE
Q 001336 465 IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL 542 (1097)
Q Consensus 465 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 542 (1097)
.+.+|...|.+++|++ ++.+|++++.|++|++||.+.... ...+..|...|.+++|+|+|++|++++.|+ .|
T Consensus 145 ~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~----~v 218 (345)
T 3fm0_A 145 VLNSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR----TV 218 (345)
T ss_dssp EECCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CE
T ss_pred EecCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC----eE
Confidence 7889999999999954 568999999999999999987653 356777888999999999999999998654 69
Q ss_pred EEEeCCC---------------CeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----eEEEE---e
Q 001336 543 VEWNESE---------------GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN----LLASI---D 600 (1097)
Q Consensus 543 ~~wd~~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~---~ 600 (1097)
++||... .+++..+.+.+...|..++|+|++..|++++.|+.|++|+...+. ....+ .
T Consensus 219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 298 (345)
T 3fm0_A 219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHL 298 (345)
T ss_dssp EEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEE
T ss_pred EEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeee
Confidence 9999632 134556666445589999999999999999999999999987643 11111 1
Q ss_pred cCCCCCCcceEEEcCCC-CEEEEEECCCcEEEEEcCCCc
Q 001336 601 ADGGLQASPCIRFNKEG-ILLAVSTNDNGIKILANADGI 638 (1097)
Q Consensus 601 ~~~~~~~v~~v~~s~~~-~~l~s~~~dg~i~iw~~~~~~ 638 (1097)
..+|...|++++|+|++ .+|++++.||+|++|++.++.
T Consensus 299 ~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 299 HQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp TTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred cccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 22457789999999987 599999999999999998873
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.4e-38 Score=354.36 Aligned_cols=293 Identities=13% Similarity=0.160 Sum_probs=237.3
Q ss_pred ecCCCeeEEEEccCCCeEEEEEeC------CCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEc
Q 001336 317 NQGSAVKSMDFHPVQQILLVVGTN------MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 390 (1097)
Q Consensus 317 ~h~~~V~~v~fspdg~~lla~gs~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 390 (1097)
.|...|++|+|||||++ ||+|+. |+.|++|+..++....... ....+|...|.+++|+
T Consensus 40 ~H~~~V~~v~fSpDG~~-las~s~d~~~~wd~~v~~~~~~~~~~~~~~~---------------~~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGAL-LLAASSLSSRTWGGSIWVFKDPEGAPNESLC---------------TAGVQTEAGVTDVAWV 103 (357)
T ss_dssp CCCSEEEEEEECSSSCE-EEEEECSSSSSCCEEEEEESSCC---CGGGC---------------SEEEECSSCEEEEEEE
T ss_pred cccCCEEEEEECCCCCE-EEEEcCCCCccccCeEEEEECCCCCcceeEe---------------cccCCCCCCEEEEEEc
Confidence 38899999999999995 578887 6788899887765432211 0135688999999999
Q ss_pred cCCCEEEEEECCCEEEEEEccCCeeeee-eeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecC
Q 001336 391 PDGTLFGVAYSKHIVHLYTYHGGDELRN-HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH 469 (1097)
Q Consensus 391 pd~~~las~~~dg~i~iwd~~~~~~~~~-~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 469 (1097)
|++++ ++++.||+|+|||+.+++.... .....+|...|++++|+|+++ +|++|+.|+.|++||+.+++++..+.+|
T Consensus 104 ~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h 180 (357)
T 4g56_B 104 SEKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAH 180 (357)
T ss_dssp TTTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 99865 5678899999999998875432 223558999999999999999 8999999999999999999999999999
Q ss_pred CcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeec--CCCCceEEEEEccCC-CEEEEeeeCCCCCceEEEEe
Q 001336 470 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD--APGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWN 546 (1097)
Q Consensus 470 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd 546 (1097)
...|.+++|++..+ .++++++.|++|++||+++.+....+. .+...+.+++|+|++ .+|++++.+ +.|++||
T Consensus 181 ~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d----~~i~~wd 255 (357)
T 4g56_B 181 SSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET----GNVSLVN 255 (357)
T ss_dssp SSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS----SCEEEEE
T ss_pred CCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecc----cceeEEE
Confidence 99999999966543 478999999999999999877665544 345579999999985 567777654 4699999
Q ss_pred CCCCeeeEEecCCCCcceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcC-CCCEEEEEE
Q 001336 547 ESEGAVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGILLAVST 624 (1097)
Q Consensus 547 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~ 624 (1097)
+++++.++.+.+|.. .|.+++|+|++ ++|++++.|++|+|||+++++++..+ +|...|++++|+| ++.+|++++
T Consensus 256 ~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 256 IKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp SSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEECSSSTTEEEEEE
T ss_pred CCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEeCCCCCEEEEEc
Confidence 999999999999887 89999999987 57889999999999999999887765 4477899999998 899999999
Q ss_pred CCCcEEEEEcCCC
Q 001336 625 NDNGIKILANADG 637 (1097)
Q Consensus 625 ~dg~i~iw~~~~~ 637 (1097)
.||+|++|++.+.
T Consensus 332 ~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 332 WDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEEECC--
T ss_pred CCCeEEEEECCCC
Confidence 9999999999765
No 25
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8.4e-38 Score=347.79 Aligned_cols=297 Identities=12% Similarity=0.117 Sum_probs=237.0
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCcc-ccccccCCCCCCeEEEEEccCCCEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMP-LQASLSSDYTASVNRVMWSPDGTLF 396 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~v~~spd~~~l 396 (1097)
+...|.+++|+|||+. |++++ |+++++||.... +|+....... ........|...|.+++|+||+ .|
T Consensus 29 ~~~~v~~~~fs~dG~~-l~~~s-d~~~r~Wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l 96 (344)
T 4gqb_B 29 MERQLEAARYRSDGAL-LLGAS-SLSGRCWAGSLW---------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GI 96 (344)
T ss_dssp CCSEEEEEEECTTSCE-EEEEE-CCSSSCCCEEEE---------EESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred ccCCEEEEEECCCCCE-EEEEe-CCceEEeeceee---------eeccccccCCcceeeeeeccCCCEEEEEEeCCC-eE
Confidence 4567999999999994 46666 778888873211 1111000000 0001123467789999999985 68
Q ss_pred EEEECCCEEEEEEccCCeeeeee-eeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEE
Q 001336 397 GVAYSKHIVHLYTYHGGDELRNH-LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 475 (1097)
Q Consensus 397 as~~~dg~i~iwd~~~~~~~~~~-~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 475 (1097)
++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+++ +|++|+.|++|++||+.+++++.++.+|.+.|.+
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~ 174 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC 174 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence 89999999999999998765432 24668999999999999999 8999999999999999999999999999999999
Q ss_pred EeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecC--CCCceEEEEEccCC-CEEEEeeeCCCCCceEEEEeCCCCee
Q 001336 476 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA--PGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWNESEGAV 552 (1097)
Q Consensus 476 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~ 552 (1097)
++|+++.. .++++++.|++|++||+++.+....+.. +...+.+++|+|++ +++++++. ++.|++||++++++
T Consensus 175 ~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 175 VAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTSC 249 (344)
T ss_dssp EEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--C
T ss_pred EEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCcE
Confidence 99965443 5889999999999999998887766543 44578999999954 56777765 44799999999999
Q ss_pred eEEecCCCCcceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCC-EEEEEECCCcEE
Q 001336 553 KRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI-LLAVSTNDNGIK 630 (1097)
Q Consensus 553 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~~~dg~i~ 630 (1097)
+..+.+|.. .|.+++|+|++ ++|++|+.|++|++||+.+++++. +. +|...|++++|+|++. +|++++.|++|+
T Consensus 250 ~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--~H~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 250 VLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--AHRDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp CEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--CCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--CCCCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 999999987 89999999998 578999999999999999987654 44 4577899999999875 678999999999
Q ss_pred EEEcCCC
Q 001336 631 ILANADG 637 (1097)
Q Consensus 631 iw~~~~~ 637 (1097)
+|++.+.
T Consensus 326 ~w~v~~~ 332 (344)
T 4gqb_B 326 HHVVPTE 332 (344)
T ss_dssp EEECCC-
T ss_pred EEECCCC
Confidence 9999765
No 26
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.7e-38 Score=350.70 Aligned_cols=295 Identities=15% Similarity=0.160 Sum_probs=232.1
Q ss_pred CccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCc-cccccCCCCCCCCCeeEEEEcc
Q 001336 738 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGI-LMTNDISDTNPEDAVPCFALSK 816 (1097)
Q Consensus 738 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~~h~~~v~~l~~s~ 816 (1097)
+...|.+++|+|||++|++++ |+++++|+... .+|+..... ..........+...|.+++|+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 567899999999999888776 67788886321 111111100 0000000011567899999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCceeEE----eCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEeccccc
Q 001336 817 NDSYVMSAS-GGKISLFNMMTFKTMTT----FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQK 891 (1097)
Q Consensus 817 dg~~la~~s-dg~i~iwd~~~~~~~~~----~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~ 891 (1097)
++. |++++ ||+|+|||+.+++.+.. +.+|...|++++|+| ++++|++|+.|++|++||+.+++++..+.+|.+
T Consensus 93 d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 93 ERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp TTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 965 55666 99999999999876554 448999999999999 999999999999999999999999999999999
Q ss_pred CeEEEEEecCC-CEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCC-CcEEEE-EeCCeEEEEeC
Q 001336 892 RITGLAFSNTL-NVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD-QTHLLA-VHETQIAIYEA 968 (1097)
Q Consensus 892 ~V~~l~~s~dg-~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~l~~-~~d~~v~vwd~ 968 (1097)
.|++++|++++ .+|++++.|++|++||+.+++.... +.. ..+ ...+.+++|+|+ +++|++ +.|+.|++||+
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~-~~~---~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IGC-SAP---GYLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC--------CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeee--eec-cee---eccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence 99999999998 4789999999999999998763321 111 111 135789999985 567777 47899999999
Q ss_pred CCcceeeeeeccCCCCCEEEEEEecCC-CEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCC
Q 001336 969 PKLECLKQFVPREASGPITHATYSCDS-QSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDP 1047 (1097)
Q Consensus 969 ~~~~~~~~~~~~~h~~~v~~v~~s~dg-~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~ 1047 (1097)
.+++++..+. +|...|++++|+||| ++|++|+.|++|+|||+.++++.. +. +|.+.|+++ +|+|++.
T Consensus 245 ~~~~~~~~~~--~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-------~H~~~V~~v--~~sp~~~ 312 (344)
T 4gqb_B 245 KSTSCVLSSA--VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-------AHRDFVRDA--TWSPLNH 312 (344)
T ss_dssp CC--CCEEEE--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-------CCSSCEEEE--EECSSST
T ss_pred CCCcEEEEEc--CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-------CCCCCEEEE--EEeCCCC
Confidence 9999998887 899999999999998 579999999999999999987643 22 799999877 8999766
Q ss_pred CEEEEEecCCcEEEEecCCCC
Q 001336 1048 NQFALGLTDGGVYIIEPLEAE 1068 (1097)
Q Consensus 1048 ~~l~s~~~Dg~v~~W~~~~~~ 1068 (1097)
.+|++|+.||+|++|++....
T Consensus 313 ~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 313 SLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TEEEEEETTSCEEEEECCC--
T ss_pred eEEEEEcCCCeEEEEECCCCC
Confidence 789999999999999998643
No 27
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.7e-38 Score=358.01 Aligned_cols=302 Identities=16% Similarity=0.270 Sum_probs=261.1
Q ss_pred ceEEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEE
Q 001336 310 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 388 (1097)
Q Consensus 310 ~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 388 (1097)
..+..++. |.+.|++++|+|+|++ |++|+.||+|+|||+.+++.... +.+|...|.+++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~ 115 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECA 115 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCE
T ss_pred eEEeecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEE
Confidence 45666777 9999999999999996 58999999999999999877653 567999999999
Q ss_pred EccCCCEEEEEECCCEEEEEEccCCee----eeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001336 389 WSPDGTLFGVAYSKHIVHLYTYHGGDE----LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY 464 (1097)
Q Consensus 389 ~spd~~~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~ 464 (1097)
|+|+|++||+|+.|+.|++|++.+... ......+.+|.+.|.++.|+|++.. .|++|+.|++|++||+.+++.+.
T Consensus 116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEE
T ss_pred ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEE
Confidence 999999999999999999999975421 1122347899999999999998654 69999999999999999999988
Q ss_pred Ee-----ecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCC-CCceeeecCCCCceEEEEEccCCCEEEEeeeCCCC
Q 001336 465 IF-----EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN-LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG 538 (1097)
Q Consensus 465 ~~-----~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 538 (1097)
.+ .+|...|.++++.+ .++.++++|+.|++|++||++. ......+..|...|.+++|+|++++|++++.|+
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~-~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~-- 271 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINS-LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG-- 271 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECS-SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSS--
T ss_pred EeecccCCCCccCeEEEEeec-CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCC--
Confidence 87 67999999999854 3558999999999999999984 456667788888999999999999999998754
Q ss_pred CceEEEEeCCCCeeeEEecCCCC------cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEec--CCCCCCcce
Q 001336 539 ESYLVEWNESEGAVKRTYHGLGK------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA--DGGLQASPC 610 (1097)
Q Consensus 539 ~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~ 610 (1097)
.|++||+++++.+..+..+.. ..+.+++|+|+|++|++|+.||.|++||..+++.+..+.. .+|...|.+
T Consensus 272 --~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 272 --TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349 (380)
T ss_dssp --CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred --eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence 699999999999888866432 2378999999999999999999999999999998887732 245778999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 611 IRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 611 v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
++|+|+|.+|++|+.|++|++|++...
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 999999999999999999999998765
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-37 Score=355.16 Aligned_cols=308 Identities=14% Similarity=0.206 Sum_probs=250.6
Q ss_pred eEEEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEc----CCCceeeeeeeeEeeccccCccccccccCCCCCCeEE
Q 001336 311 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEV----GSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNR 386 (1097)
Q Consensus 311 ~~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 386 (1097)
..+....|...|++++|+|+|+.+||+|+.||.|+|||+ .+++.+..... ...+..... ......+|...|++
T Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~v~~ 113 (425)
T 1r5m_A 37 KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTI-IAELRHPFA--LSASSGKTTNQVTC 113 (425)
T ss_dssp EECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEE-EEEEECCCC--CC------CBCEEE
T ss_pred hheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccc-ccccccccc--ccccccCCCCceEE
Confidence 334445588999999999999945689999999999999 87773110000 000000000 00012347889999
Q ss_pred EEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEe
Q 001336 387 VMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 466 (1097)
Q Consensus 387 v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 466 (1097)
++|+|++++|++|+.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+
T Consensus 114 ~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~ 187 (425)
T 1r5m_A 114 LAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHF 187 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEe
Confidence 99999999999999999999999 4455444 4778999999999999999 8999999999999999999999999
Q ss_pred ecCCcC---------------eEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEE
Q 001336 467 EGHESP---------------VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFS 531 (1097)
Q Consensus 467 ~~h~~~---------------v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 531 (1097)
..+... +.+++|++. ..+++++.||.|++||+++......+..+...|.+++|+|++++|++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 188 ELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp CCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred eccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE
Confidence 888777 888888653 46899999999999999998888888888889999999999999999
Q ss_pred eeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceE
Q 001336 532 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCI 611 (1097)
Q Consensus 532 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 611 (1097)
++.++ .|++||+.+++.+..+.+|.. .+.+++|+|++ .+++++.|+.|++||+.+++.+..+..+ ...|.++
T Consensus 265 ~~~d~----~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~ 336 (425)
T 1r5m_A 265 ASDDG----TLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD--GVPIFAG 336 (425)
T ss_dssp EETTS----CEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT--TCCEEEE
T ss_pred EcCCC----EEEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC--CccEEEE
Confidence 98644 699999999999999988876 89999999999 9999999999999999999999998865 6689999
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001336 612 RFNKEGILLAVSTNDNGIKILANADGI 638 (1097)
Q Consensus 612 ~~s~~~~~l~s~~~dg~i~iw~~~~~~ 638 (1097)
+|+|++.+|++++.||.|++|++.++.
T Consensus 337 ~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 337 RISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred EEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 999999999999999999999998763
No 29
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1e-36 Score=334.56 Aligned_cols=255 Identities=20% Similarity=0.307 Sum_probs=226.7
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001336 376 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 455 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 455 (1097)
.+.+|.+.|.+++|+|++++|++|+.||+|++||+.+++.+. .+.+|..+|.+++|+|+++ +|++|+.|++|++|
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEE
Confidence 377899999999999999999999999999999999987665 5788999999999999999 89999999999999
Q ss_pred ECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCc-eeeecCCCCceEEEEEcc-CCCEEEEee
Q 001336 456 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSA-DGARLFSCG 533 (1097)
Q Consensus 456 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 533 (1097)
|+.+++++..+.+|.+.|.+++|+ +++.+|++|+.|++|++||+++... ...+..|...|.+++|+| ++..|++++
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVH--PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEEC--SSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEc--CCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 999999999999999999999995 4568999999999999999987644 455778888999999999 678999998
Q ss_pred eCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceE
Q 001336 534 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT--TKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCI 611 (1097)
Q Consensus 534 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 611 (1097)
.|+ .|++||+.++.....+..++...+..+.|+| ++.+|++++.|+.|++||+.+++++..+.+| ...|.++
T Consensus 161 ~D~----~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h--~~~v~~~ 234 (304)
T 2ynn_A 161 LDR----TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH--MSNVSFA 234 (304)
T ss_dssp TTS----EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC--SSCEEEE
T ss_pred CCC----eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC--CCCEEEE
Confidence 644 7999999988777777655545888899976 6789999999999999999999999999866 6789999
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCceEEEEe
Q 001336 612 RFNKEGILLAVSTNDNGIKILANADGIRLLRTV 644 (1097)
Q Consensus 612 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 644 (1097)
+|+|++.+|++|+.||+|++||..++ +..+.+
T Consensus 235 ~~~p~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~ 266 (304)
T 2ynn_A 235 VFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTL 266 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTC-CEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCC-ceeeec
Confidence 99999999999999999999999887 444433
No 30
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.5e-37 Score=342.21 Aligned_cols=318 Identities=14% Similarity=0.186 Sum_probs=237.9
Q ss_pred cCCCCC-CeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001336 377 SSDYTA-SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 455 (1097)
Q Consensus 377 ~~~h~~-~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 455 (1097)
+.+|.. .|.+++|+|+|++||+|+.|++|+|||+.++..........+|...|.+++|+|+++ +|++|+.|++|++|
T Consensus 11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~iw 88 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCIW 88 (345)
T ss_dssp ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEEE
Confidence 678887 999999999999999999999999999998865433333568999999999999999 89999999999999
Q ss_pred ECCCC--ceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEee
Q 001336 456 DAVTG--TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG 533 (1097)
Q Consensus 456 d~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 533 (1097)
|+.++ +++..+.+|...|.+++|+ +++++|++++.|++|++||++.....
T Consensus 89 ~~~~~~~~~~~~~~~h~~~v~~v~~s--p~~~~l~s~s~D~~v~iwd~~~~~~~-------------------------- 140 (345)
T 3fm0_A 89 KKNQDDFECVTTLEGHENEVKSVAWA--PSGNLLATCSRDKSVWVWEVDEEDEY-------------------------- 140 (345)
T ss_dssp EECCC-EEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEEECTTSCE--------------------------
T ss_pred EccCCCeEEEEEccCCCCCceEEEEe--CCCCEEEEEECCCeEEEEECCCCCCe--------------------------
Confidence 98876 4577899999999999995 46689999999999999998642110
Q ss_pred eCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEE
Q 001336 534 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF 613 (1097)
Q Consensus 534 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 613 (1097)
..+..+.+|.. .|.+++|+|++++|++++.|+.|++||..+++........+|...|.+++|
T Consensus 141 -----------------~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~ 202 (345)
T 3fm0_A 141 -----------------ECVSVLNSHTQ-DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF 202 (345)
T ss_dssp -----------------EEEEEECCCCS-CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred -----------------EEEEEecCcCC-CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEE
Confidence 11223445554 789999999999999999999999999988764433333345779999999
Q ss_pred cCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCC
Q 001336 614 NKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMS 693 (1097)
Q Consensus 614 s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1097)
+|++++|++++.|++|++|+...... ...
T Consensus 203 sp~g~~l~s~s~D~~v~iW~~~~~~~--------~~~------------------------------------------- 231 (345)
T 3fm0_A 203 DPSGQRLASCSDDRTVRIWRQYLPGN--------EQG------------------------------------------- 231 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEEECTTC--------TTC-------------------------------------------
T ss_pred CCCCCEEEEEeCCCeEEEeccccCCC--------Ccc-------------------------------------------
Confidence 99999999999999999998643200 000
Q ss_pred CCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCC
Q 001336 694 NDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNER 773 (1097)
Q Consensus 694 ~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~ 773 (1097)
+..... .+..+.+. .
T Consensus 232 -----------~~~~~~-------------------------------------~~~~~~~~---------~-------- 246 (345)
T 3fm0_A 232 -----------VACSGS-------------------------------------DPSWKCIC---------T-------- 246 (345)
T ss_dssp -----------CCCC----------------------------------------CEEEEEE---------E--------
T ss_pred -----------ceeecc-------------------------------------CCccceeE---------E--------
Confidence 000000 00000000 0
Q ss_pred CccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCc---------eeEEe
Q 001336 774 NSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK---------TMTTF 843 (1097)
Q Consensus 774 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~---------~~~~~ 843 (1097)
+.+ .|...|.+++|+|++..|++++ |+.|++|+..... .....
T Consensus 247 --------------------------~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 299 (345)
T 3fm0_A 247 --------------------------LSG-FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLH 299 (345)
T ss_dssp --------------------------ECS-SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEET
T ss_pred --------------------------ecC-CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeec
Confidence 000 1667778888888888888777 7788888775432 11234
Q ss_pred CCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEE
Q 001336 844 MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK 885 (1097)
Q Consensus 844 ~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~ 885 (1097)
.+|...|++++|+|++..+||+|+.||+|++|++.+++....
T Consensus 300 ~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 300 QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp TSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred ccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 679999999999994346999999999999999998775544
No 31
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.1e-36 Score=339.54 Aligned_cols=287 Identities=15% Similarity=0.197 Sum_probs=255.0
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 456 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 456 (1097)
+.+|...|++++|+||+++||+|+.||+|+|||..+++... .+..|...|.+++|+|++. +|++|+.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 67999999999999999999999999999999999887554 4677999999999999999 899999999999999
Q ss_pred CCCC------ceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEcc--CCCE
Q 001336 457 AVTG------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA--DGAR 528 (1097)
Q Consensus 457 ~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~ 528 (1097)
+... .....+.+|...|.+++|+ +++..|++++.|++|++||+++++....+..|...|.+++|+| ++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFT--NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEEC--SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEe--CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8654 3456788899999999995 4557999999999999999999998888989999999999987 5789
Q ss_pred EEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCc
Q 001336 529 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS 608 (1097)
Q Consensus 529 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 608 (1097)
|++++.|+ .|++||+++++.+..+.+|.. .|.+++|+|++++|++++.|+.|++||+.+++.+..+..+.....+
T Consensus 213 l~sgs~Dg----~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 213 FVSGGCDK----KAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA 287 (354)
T ss_dssp EEEEETTS----CEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred EEEEeCCC----eEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence 99998654 699999999999999999887 8999999999999999999999999999999888877665555578
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccc
Q 001336 609 PCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAA 688 (1097)
Q Consensus 609 ~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1097)
.+++|+|++.+|++|+.|+.|++||+.++ ..+..+.
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~l~------------------------------------------- 323 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKG-SRVSILF------------------------------------------- 323 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTC-SEEEEEC-------------------------------------------
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCC-ceEEEEE-------------------------------------------
Confidence 89999999999999999999999999776 2222221
Q ss_pred cccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEec
Q 001336 689 MVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 767 (1097)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~ 767 (1097)
+|...|.+++|+|||++|++++.||.|++|+
T Consensus 324 ------------------------------------------------~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 324 ------------------------------------------------GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ------------------------------------------------CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ------------------------------------------------CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 3778899999999999999999999999994
No 32
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.6e-36 Score=330.70 Aligned_cols=292 Identities=17% Similarity=0.301 Sum_probs=255.5
Q ss_pred eEEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEE
Q 001336 311 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 389 (1097)
Q Consensus 311 ~~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 389 (1097)
....++. |...|++++|+|+|++ +++|+.||.|+||++.+++.... +.+|...|.+++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~ 73 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAW 73 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCE-EEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEE
Confidence 3445555 9999999999999995 58999999999999998876543 6789999999999
Q ss_pred ccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecC
Q 001336 390 SPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH 469 (1097)
Q Consensus 390 spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 469 (1097)
+|++++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|+.|++||+.+++++..+..|
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred cCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 9999999999999999999999987665 4789999999999999999 8999999999999999999999999999
Q ss_pred CcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeec-CCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCC
Q 001336 470 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 548 (1097)
Q Consensus 470 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 548 (1097)
..+|.+++|+ +++.++++++.||.|++||+++......+. .+...+..++|+|++++|++++.+ +.|++||+.
T Consensus 149 ~~~v~~~~~~--~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----~~i~iwd~~ 222 (312)
T 4ery_A 149 SDPVSAVHFN--RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD----NTLKLWDYS 222 (312)
T ss_dssp SSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETT----TEEEEEETT
T ss_pred CCcEEEEEEc--CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCC----CeEEEEECC
Confidence 9999999994 566899999999999999999877666554 344579999999999999999864 479999999
Q ss_pred CCeeeEEecCCCCcc--eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEE--
Q 001336 549 EGAVKRTYHGLGKRS--VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST-- 624 (1097)
Q Consensus 549 ~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-- 624 (1097)
+++.+..+.+|.... +......+++.++++++.||.|++||+.+++.+..+..| ...|.+++|+|++.++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH--TDVVISTACHPTENIIASAALE 300 (312)
T ss_dssp TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC--SSCEEEEEECSSSSEEEEEECT
T ss_pred CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc--CCcEEEEeecCcCCceEEEEcc
Confidence 999999998876522 222334467889999999999999999999999999866 67899999999999999987
Q ss_pred CCCcEEEEEcC
Q 001336 625 NDNGIKILANA 635 (1097)
Q Consensus 625 ~dg~i~iw~~~ 635 (1097)
.|++|++|+.+
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999864
No 33
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.3e-37 Score=349.23 Aligned_cols=318 Identities=14% Similarity=0.181 Sum_probs=263.9
Q ss_pred EEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEE
Q 001336 542 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 621 (1097)
Q Consensus 542 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 621 (1097)
+..|+.....+.+.+.+|.. .|.+++|+|++++|++|+.||+|++||+.+++....+..| ...|.+++|+|++++|+
T Consensus 48 ~~~~~~~~~~~~~~l~gH~~-~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h--~~~v~~~~~s~~g~~la 124 (380)
T 3iz6_a 48 AVSFNPTDLVCCRTLQGHSG-KVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLH--CPWVMECAFAPNGQSVA 124 (380)
T ss_dssp CCCCCCCCCEEEEEECCCSS-CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECC--CTTCCCCEECTTSSEEE
T ss_pred ccccccceeEEeeccccccc-EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecC--CCCEEEEEECCCCCEEE
Confidence 44577777888899999987 9999999999999999999999999999999999999866 66899999999999999
Q ss_pred EEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccc
Q 001336 622 VSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTD 701 (1097)
Q Consensus 622 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1097)
+|+.|+.+++|++.+....
T Consensus 125 s~~~d~~v~iw~~~~~~~~------------------------------------------------------------- 143 (380)
T 3iz6_a 125 CGGLDSACSIFNLSSQADR------------------------------------------------------------- 143 (380)
T ss_dssp ECCSSSCCEEEECCCCSSC-------------------------------------------------------------
T ss_pred EeeCCCcEEEEECCCCccc-------------------------------------------------------------
Confidence 9999999999998653100
Q ss_pred cCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCcccc
Q 001336 702 VKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATT 781 (1097)
Q Consensus 702 ~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 781 (1097)
++.
T Consensus 144 ------------------------------------------------~~~----------------------------- 146 (380)
T 3iz6_a 144 ------------------------------------------------DGN----------------------------- 146 (380)
T ss_dssp ------------------------------------------------CCS-----------------------------
T ss_pred ------------------------------------------------cCC-----------------------------
Confidence 000
Q ss_pred ccCCcccCCCCCccccccCCCCCCCCCeeEEEEccC-CCEEEEEe-CCeEEEEEcCCCceeEEe-----CCCCCCeEEEE
Q 001336 782 NQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN-DSYVMSAS-GGKISLFNMMTFKTMTTF-----MPPPPAATFLA 854 (1097)
Q Consensus 782 ~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~la~~s-dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~ 854 (1097)
......+.+ |...|.++.|+|+ +..|++++ |++|++||+.+++.+..+ .+|...|.+++
T Consensus 147 ------------~~~~~~~~g--h~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~ 212 (380)
T 3iz6_a 147 ------------MPVSRVLTG--HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212 (380)
T ss_dssp ------------STTCCBCCC--CSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred ------------ccceeeccC--CCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE
Confidence 000000222 7888888899886 45688888 999999999999998887 67889999999
Q ss_pred EeCCCCCEEEEEECCCcEEEEEcc-cceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeec
Q 001336 855 FHPQDNNIIAIGMEDSSIQIYNVR-VDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIP 933 (1097)
Q Consensus 855 ~sp~~~~~la~g~~dg~v~vwd~~-~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~ 933 (1097)
|++.++.+|++|+.|+.|++||+. .++.+..+.+|.+.|++++|+|++++|++++.|++|++||+.+++.... +...
T Consensus 213 ~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~--~~~~ 290 (380)
T 3iz6_a 213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV--YNRE 290 (380)
T ss_dssp ECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEE--ECCC
T ss_pred eecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE--eccc
Confidence 987678999999999999999997 4577889999999999999999999999999999999999998663221 1111
Q ss_pred CCC-CCCccCCeEEEEcCCCcEEEEE-eCCeEEEEeCCCcceeeeeec--cCCCCCEEEEEEecCCCEEEEEecCCeEEE
Q 001336 934 NGR-TASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVP--REASGPITHATYSCDSQSIYVAFEEGSVGV 1009 (1097)
Q Consensus 934 ~~~-~~~~~~v~~l~~s~dg~~l~~~-~d~~v~vwd~~~~~~~~~~~~--~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~v 1009 (1097)
... ......+.+++|+|+|++|+++ .|+.|++||+.+++.+..+.. .+|.+.|++++|+|||++|++|+.|++|++
T Consensus 291 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~i 370 (380)
T 3iz6_a 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI 370 (380)
T ss_dssp CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEE
Confidence 111 1111358999999999999995 789999999999888776631 479999999999999999999999999999
Q ss_pred EeCCCCc
Q 001336 1010 LTASTLR 1016 (1097)
Q Consensus 1010 wd~~~~~ 1016 (1097)
|++...+
T Consensus 371 W~~~~~~ 377 (380)
T 3iz6_a 371 WAFSGHR 377 (380)
T ss_dssp EECCSSS
T ss_pred EecCCCc
Confidence 9998754
No 34
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-36 Score=351.76 Aligned_cols=348 Identities=13% Similarity=0.181 Sum_probs=274.4
Q ss_pred CCCCCCeEEEEEccCCC-EEEEEECCCEEEEEEc----cCCee------eeee-eeee------cccCcEEEEEEecCCC
Q 001336 378 SDYTASVNRVMWSPDGT-LFGVAYSKHIVHLYTY----HGGDE------LRNH-LEIE------AHVGSVNDLAFSYPNK 439 (1097)
Q Consensus 378 ~~h~~~V~~v~~spd~~-~las~~~dg~i~iwd~----~~~~~------~~~~-~~l~------~h~~~V~~l~~s~d~~ 439 (1097)
..|.+.|++++|+|+++ +||+|+.||.|++|++ .+++. .... ..+. +|.+.|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34678999999999999 9999999999999999 87762 2211 1111 2688999999999999
Q ss_pred cEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCc---
Q 001336 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHS--- 516 (1097)
Q Consensus 440 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--- 516 (1097)
+|++++.|+.|++|| .+++.+..+.+|...|.+++|+ +++.+|++++.|+.|++||+.+......+..+...
T Consensus 122 --~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 122 --SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWN--KDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp --EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEEC--TTSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred --EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEEC--CCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 899999999999999 7888999999999999999994 56689999999999999999988877777766655
Q ss_pred ------------eEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCc
Q 001336 517 ------------STMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM 584 (1097)
Q Consensus 517 ------------v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 584 (1097)
+.+++|++++. +++++. ++.|.+||+.+++.+..+..|.. .+.+++|+|++++|++++.||.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~g~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~ 270 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVDDDK-FVIPGP----KGAIFVYQITEKTPTGKLIGHHG-PISVLEFNDTNKLLLSASDDGT 270 (425)
T ss_dssp ---------CCCBSCCEEEETTE-EEEECG----GGCEEEEETTCSSCSEEECCCSS-CEEEEEEETTTTEEEEEETTSC
T ss_pred eeeccccCCcceeeEEEEcCCCE-EEEEcC----CCeEEEEEcCCCceeeeeccCCC-ceEEEEECCCCCEEEEEcCCCE
Confidence 89999999865 566654 44699999999999999988876 8999999999999999999999
Q ss_pred EEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCc
Q 001336 585 IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPA 664 (1097)
Q Consensus 585 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1097)
|++||+.+++.+..+..+ ...|.+++|+|++ ++++++.|+.|++||+.++ .....+.
T Consensus 271 i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~------------------- 327 (425)
T 1r5m_A 271 LRIWHGGNGNSQNCFYGH--SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN-TLLALSI------------------- 327 (425)
T ss_dssp EEEECSSSBSCSEEECCC--SSCEEEEEEETTT-EEEEEETTSEEEEEETTTT-EEEEEEE-------------------
T ss_pred EEEEECCCCccceEecCC--CccEEEEEECCCC-EEEEEeCCCcEEEEECCCC-cEeEecc-------------------
Confidence 999999999999888755 6689999999999 9999999999999999876 3332221
Q ss_pred ccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEE
Q 001336 665 IGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSR 744 (1097)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~ 744 (1097)
.|...|.+
T Consensus 328 ------------------------------------------------------------------------~~~~~i~~ 335 (425)
T 1r5m_A 328 ------------------------------------------------------------------------VDGVPIFA 335 (425)
T ss_dssp ------------------------------------------------------------------------CTTCCEEE
T ss_pred ------------------------------------------------------------------------cCCccEEE
Confidence 14566788
Q ss_pred EEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEE
Q 001336 745 LIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSA 824 (1097)
Q Consensus 745 l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~ 824 (1097)
++|+|++++|++++.||.|++|++... .... ..+. ..
T Consensus 336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~----------------------~~~~------------~~~~---------~~ 372 (425)
T 1r5m_A 336 GRISQDGQKYAVAFMDGQVNVYDLKKL----------------------NSKS------------RSLY---------GN 372 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECHHH----------------------HC-----------------------------
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCC----------------------ccce------------eeee---------cc
Confidence 888888888888888888888876421 1000 0000 00
Q ss_pred eCCeEEEEEcCCCceeEEeCCCCC--CeEEEEEeCCCCCEEEEEECCCcEEEEEcc
Q 001336 825 SGGKISLFNMMTFKTMTTFMPPPP--AATFLAFHPQDNNIIAIGMEDSSIQIYNVR 878 (1097)
Q Consensus 825 sdg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~sp~~~~~la~g~~dg~v~vwd~~ 878 (1097)
.++. +.....+.+..+.+|.. .|++++|+| ++++|++++.||.|++|++.
T Consensus 373 ~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 373 RDGI---LNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ---------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCCEEEECC
T ss_pred cccc---cCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceEEEEeec
Confidence 1222 22223457788888876 999999999 89999999999999999985
No 35
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9e-36 Score=329.37 Aligned_cols=295 Identities=17% Similarity=0.268 Sum_probs=251.1
Q ss_pred cCCCCCCeEEEEEccCC-CEEEEEECCCEEEEEEccCCee--eeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEE
Q 001336 377 SSDYTASVNRVMWSPDG-TLFGVAYSKHIVHLYTYHGGDE--LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 453 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~-~~las~~~dg~i~iwd~~~~~~--~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 453 (1097)
+.+|.+.|++++|+|++ ++|++|+.|++|++|++..... -.....+.+|...|.+++|+|+++ +|++|+.|++|+
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v~ 90 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTLR 90 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEEE
Confidence 78999999999999965 8999999999999999975321 123446889999999999999999 899999999999
Q ss_pred EEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccC------CC
Q 001336 454 VWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD------GA 527 (1097)
Q Consensus 454 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~------~~ 527 (1097)
+||+.+++++..+.+|...|.+++|+ +++.+|++++.|++|++||++ ......+..|...|.++.++|. +.
T Consensus 91 ~wd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 167 (319)
T 3frx_A 91 LWDVATGETYQRFVGHKSDVMSVDID--KKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSV 167 (319)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEEC--TTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CC
T ss_pred EEECCCCCeeEEEccCCCcEEEEEEc--CCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCcc
Confidence 99999999999999999999999994 566899999999999999997 4556667778889999999985 44
Q ss_pred EEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCC
Q 001336 528 RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQA 607 (1097)
Q Consensus 528 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 607 (1097)
.+++++.|+ .|++||+++++....+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 168 ~l~s~~~d~----~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~ 239 (319)
T 3frx_A 168 TIISAGNDK----MVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---DE 239 (319)
T ss_dssp EEEEEETTS----CEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---SC
T ss_pred EEEEEeCCC----EEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---Cc
Confidence 788888644 699999999999999999987 8999999999999999999999999999999999888753 47
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCcccccccccccccccc
Q 001336 608 SPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAA 687 (1097)
Q Consensus 608 v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1097)
|.+++|+|++.++++++.+ .+++|++... .....+..+...
T Consensus 240 v~~~~~sp~~~~la~~~~~-~i~v~~~~~~-~~~~~~~~~~~~------------------------------------- 280 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAATAT-GIKVFSLDPQ-YLVDDLRPEFAG------------------------------------- 280 (319)
T ss_dssp EEEEEECSSSSEEEEEETT-EEEEEEETTE-EEEEEECCCCTT-------------------------------------
T ss_pred EEEEEEcCCCCEEEEEcCC-CcEEEEeCcC-eeeeccCccccc-------------------------------------
Confidence 9999999999999988765 5999998765 333333211000
Q ss_pred ccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEec
Q 001336 688 AMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 767 (1097)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~ 767 (1097)
....+...+.+++|+|||++|++++.||.|++|+
T Consensus 281 ----------------------------------------------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 281 ----------------------------------------------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp ----------------------------------------------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ----------------------------------------------cccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 0012556788999999999999999999999998
Q ss_pred cC
Q 001336 768 WP 769 (1097)
Q Consensus 768 ~~ 769 (1097)
+.
T Consensus 315 ~~ 316 (319)
T 3frx_A 315 VM 316 (319)
T ss_dssp EE
T ss_pred Ee
Confidence 75
No 36
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.9e-36 Score=343.03 Aligned_cols=309 Identities=17% Similarity=0.239 Sum_probs=249.6
Q ss_pred eEEEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEc
Q 001336 311 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 390 (1097)
Q Consensus 311 ~~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 390 (1097)
++...+.|...|++++|||||++ ||+|+ ++.++||++.+++.+.......-.... ...+.......+...|.+++|+
T Consensus 56 ~~~~~~~h~~~V~~v~fspdg~~-la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 56 ELHKSLDHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAANKD-PENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EEEEEEECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEEecCCCCEEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCEEEEecCccccccc-cccccccccCCCceeEEEEEEC
Confidence 34556779999999999999995 47776 789999999998876532110000000 0000000112344469999999
Q ss_pred cCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCC
Q 001336 391 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 470 (1097)
Q Consensus 391 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~ 470 (1097)
|||++||+|+.|+.|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.++++...+. +.
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~ 206 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IE 206 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence 999999999999999999999987654 5889999999999999999 89999999999999999999888886 56
Q ss_pred cCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeee-------cCCCCceEEEEEccCCCEEEEeeeCCCCCceEE
Q 001336 471 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-------DAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 543 (1097)
Q Consensus 471 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 543 (1097)
..+.+++|++ .++.+|++++.|+.|++||++++.....+ ..|...|.+++|+|++++|++++.| +.|+
T Consensus 207 ~~v~~~~~~~-~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d----~~v~ 281 (393)
T 1erj_A 207 DGVTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD----RSVK 281 (393)
T ss_dssp SCEEEEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT----SEEE
T ss_pred CCcEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC----CEEE
Confidence 7799999864 25689999999999999999987765554 4566789999999999999999864 4799
Q ss_pred EEeCCCC------------eeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceE
Q 001336 544 EWNESEG------------AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCI 611 (1097)
Q Consensus 544 ~wd~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 611 (1097)
+||+++. .+...+.+|.. .|.+++|++++.+|++++.|+.|++||..+++.+..+.+| ...|.++
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h--~~~v~~v 358 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH--RNSVISV 358 (393)
T ss_dssp EEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEE
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC--CCCEEEE
Confidence 9998753 34567778876 8999999999999999999999999999999999999866 6689999
Q ss_pred EEcC------CCCEEEEEECCCcEEEEEcCC
Q 001336 612 RFNK------EGILLAVSTNDNGIKILANAD 636 (1097)
Q Consensus 612 ~~s~------~~~~l~s~~~dg~i~iw~~~~ 636 (1097)
+|++ ++.+|++|+.||+|+||++..
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9886 688999999999999999754
No 37
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-37 Score=360.41 Aligned_cols=299 Identities=15% Similarity=0.248 Sum_probs=250.0
Q ss_pred EeecCCCeeEEEEccCCCeEEEEE----------eCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCe
Q 001336 315 TLNQGSAVKSMDFHPVQQILLVVG----------TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASV 384 (1097)
Q Consensus 315 ~~~h~~~V~~v~fspdg~~lla~g----------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 384 (1097)
.+.+...|.+++|+|+|+.++++| +.||.|+|||+.+++.... + ....|...|
T Consensus 8 ~l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~--~---------------~~~~~~~~v 70 (416)
T 2pm9_A 8 KLAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP--I---------------ASLQVDSKF 70 (416)
T ss_dssp --CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC--S---------------CCCCCSSCE
T ss_pred hHhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE--E---------------EEEecCCce
Confidence 344556789999999998788999 8899999999998763210 0 124688999
Q ss_pred EEEEEccCCCEEEEEECCCEEEEEEccCCee-eeeeeeeecccCcEEEEEEecC-CCcEEEEEEeCCCcEEEEECCCCc-
Q 001336 385 NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE-LRNHLEIEAHVGSVNDLAFSYP-NKQLSVVTCGEDRVIKVWDAVTGT- 461 (1097)
Q Consensus 385 ~~v~~spd~~~las~~~dg~i~iwd~~~~~~-~~~~~~l~~h~~~V~~l~~s~d-~~~~~l~s~s~d~~i~iwd~~~~~- 461 (1097)
.+++|+|++++|++|+.||.|++||+.+... ......+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++
T Consensus 71 ~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~ 148 (416)
T 2pm9_A 71 NDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTE 148 (416)
T ss_dssp EEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSS
T ss_pred EEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcc
Confidence 9999999999999999999999999987210 1122357889999999999998 66 79999999999999999887
Q ss_pred -----eeE---EeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCC------CCceEEEEEccCC-
Q 001336 462 -----KQY---IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP------GHSSTMMAYSADG- 526 (1097)
Q Consensus 462 -----~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~~- 526 (1097)
... .+.+|...|.+++|+++. +.++++++.|+.|++||+++.+....+..+ ...+.+++|+|++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (416)
T 2pm9_A 149 SPSNYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS 227 (416)
T ss_dssp CTTTCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT
T ss_pred ccccccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC
Confidence 333 346799999999996542 479999999999999999998887777766 6789999999998
Q ss_pred CEEEEeeeCCCCCceEEEEeCCCC-eeeEEec-CCCCcceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEecCC
Q 001336 527 ARLFSCGTNKEGESYLVEWNESEG-AVKRTYH-GLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNVNLLASIDADG 603 (1097)
Q Consensus 527 ~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 603 (1097)
.++++++.++ .+..|++||++++ ..+..+. +|.. .+.+++|+| ++++|++++.||.|++||+.+++.+..+..|
T Consensus 228 ~~l~~~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~- 304 (416)
T 2pm9_A 228 TRVATATGSD-NDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR- 304 (416)
T ss_dssp TEEEEEECCS-SSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS-
T ss_pred CEEEEEECCC-CCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC-
Confidence 5777776543 1236999999986 6677777 7766 899999999 8999999999999999999999999999866
Q ss_pred CCCCcceEEEcCCC-CEEEEEECCCcEEEEEcCCC
Q 001336 604 GLQASPCIRFNKEG-ILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 604 ~~~~v~~v~~s~~~-~~l~s~~~dg~i~iw~~~~~ 637 (1097)
...|.+++|+|++ .+|++++.||.|++|++.+.
T Consensus 305 -~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 305 -GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp -SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred -CCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 6689999999998 89999999999999999876
No 38
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-36 Score=333.25 Aligned_cols=298 Identities=15% Similarity=0.204 Sum_probs=232.0
Q ss_pred eEEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEE
Q 001336 311 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 389 (1097)
Q Consensus 311 ~~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 389 (1097)
+++.++. |...|++++|+|+ +||+|+.||+|+|||+..+.......+ ...+|...|.+++|
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~---------------~~~~h~~~v~~v~~ 66 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVL---------------DETAHKKAIRSVAW 66 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEE---------------CTTCCCSCEEEEEE
T ss_pred ccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEE---------------ecCCccCCEEEEEE
Confidence 4556666 9999999999998 679999999999999987632111100 02349999999999
Q ss_pred ccCCCEEEEEECCCEEEEEEccCCe----eeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCC----Cc
Q 001336 390 SPDGTLFGVAYSKHIVHLYTYHGGD----ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT----GT 461 (1097)
Q Consensus 390 spd~~~las~~~dg~i~iwd~~~~~----~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~----~~ 461 (1097)
+|++++||+|+.|++|+|||+.... .......+.+|...|.+++|+|+++ +|++|+.|++|++||+.. .+
T Consensus 67 sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~ 144 (330)
T 2hes_X 67 RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYE 144 (330)
T ss_dssp CTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCE
T ss_pred CCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeE
Confidence 9999999999999999999986431 1123345889999999999999999 899999999999999943 25
Q ss_pred eeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCC--CceeeecCCCCceEEEEEccC--CCEEEEeeeCCC
Q 001336 462 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL--GSRVDYDAPGHSSTMMAYSAD--GARLFSCGTNKE 537 (1097)
Q Consensus 462 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~~~ 537 (1097)
++..+.+|...|.+++|++ ++.+|++++.|++|++||.... .....+..|...|.+++|+|+ +.+|++++.|+
T Consensus 145 ~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~- 221 (330)
T 2hes_X 145 CISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS- 221 (330)
T ss_dssp EEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS-
T ss_pred EEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC-
Confidence 6778999999999999954 5689999999999999998765 455667788889999999998 67899988654
Q ss_pred CCceEEEEeCCCC--------eeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEecCCCCC-
Q 001336 538 GESYLVEWNESEG--------AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL--LASIDADGGLQ- 606 (1097)
Q Consensus 538 ~~~~i~~wd~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~- 606 (1097)
.|++||+..+ .....+.+.+...|.+++|++++ .|++++.||.|++|+..+++. .... ..+|..
T Consensus 222 ---~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h~~~ 296 (330)
T 2hes_X 222 ---TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCHGVY 296 (330)
T ss_dssp ---CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTTTTS
T ss_pred ---eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-ccccccc
Confidence 6999998765 44555665333489999999765 899999999999999987742 3222 123354
Q ss_pred CcceEEEcC--CCCEEEEEECCCcEEEEEcCC
Q 001336 607 ASPCIRFNK--EGILLAVSTNDNGIKILANAD 636 (1097)
Q Consensus 607 ~v~~v~~s~--~~~~l~s~~~dg~i~iw~~~~ 636 (1097)
.|++++|+| ++.+|++|+.||+|++|++..
T Consensus 297 ~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 297 EINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred eEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 799999999 689999999999999999864
No 39
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=5.3e-35 Score=376.45 Aligned_cols=523 Identities=12% Similarity=0.059 Sum_probs=380.0
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
+...+.+.+|||+ +| +..+. +.|.+|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~i-af~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--RI-IFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--EE-EEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--EE-EEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 3457889999964 45 44443 789999998886543 567999999999999999999
Q ss_pred EEECC------CEEEEEEccCCeeeeeeeeeecccCcE-------EEEEEecCCCcEEEEEEeCC------CcEEEEECC
Q 001336 398 VAYSK------HIVHLYTYHGGDELRNHLEIEAHVGSV-------NDLAFSYPNKQLSVVTCGED------RVIKVWDAV 458 (1097)
Q Consensus 398 s~~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~V-------~~l~~s~d~~~~~l~s~s~d------~~i~iwd~~ 458 (1097)
+++.+ ..|++|++.+++. . .+..|...+ ..++|+|||+ ++++++.+ ..|.+||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~-~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI-K---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE-E---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe-E---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88654 3799999998863 2 377888888 9999999998 77888754 468888887
Q ss_pred CCceeEEeecCCcCeEEEeecccCCccEEEEEcC------------CCeEEEEEcCCCCceeeecCCCCceEEEEEccCC
Q 001336 459 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT------------DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG 526 (1097)
Q Consensus 459 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 526 (1097)
+++... +..+. ...++|++ | ++++++. +...++|..........+..+...+.++.|+++
T Consensus 143 ~g~~~~-l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 143 GINFVP-LNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp GTEEEE-CCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred CCCeEE-ecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence 776543 33332 23456754 5 7777642 345667754444455556777889999999988
Q ss_pred CEEEEeeeCCCCCceEEEEeCCC-CeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC--
Q 001336 527 ARLFSCGTNKEGESYLVEWNESE-GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG-- 603 (1097)
Q Consensus 527 ~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-- 603 (1097)
..++++.. ++ .+.+|.+.. +...+.+..+. .+...+|+|+|+.++.+. ++.|++|++...+ +..+..+.
T Consensus 215 ~l~~~~~~--dg--~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~ 286 (1045)
T 1k32_A 215 RIYFITDI--DG--FGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLE 286 (1045)
T ss_dssp EEEEEECT--TS--SCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCC
T ss_pred EEEEEEec--cC--ceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCccc
Confidence 44444432 22 345554432 33445555554 355679999999888875 8999999995444 33444321
Q ss_pred -------CCCCcceEEEc-CCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCcccc
Q 001336 604 -------GLQASPCIRFN-KEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANV 675 (1097)
Q Consensus 604 -------~~~~v~~v~~s-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1097)
+...+.+++|+ |+|+.|++++ ++.|++|+..++. ... +.
T Consensus 287 ~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-~~~-~~------------------------------ 333 (1045)
T 1k32_A 287 SPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-VLK-VP------------------------------ 333 (1045)
T ss_dssp BCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-EEE-CS------------------------------
T ss_pred ccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-eEE-cc------------------------------
Confidence 12358899999 9999999888 7889999876651 110 10
Q ss_pred ccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCcc-ceEEEEEccCCcee
Q 001336 676 GTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAM-RVSRLIYTNSGLAI 754 (1097)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~spdg~~l 754 (1097)
.+.. .+..++|+ ||+.+
T Consensus 334 -------------------------------------------------------------~~~~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 334 -------------------------------------------------------------EPLRIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp -------------------------------------------------------------CCSCEEEEEECSS-SEEEE
T ss_pred -------------------------------------------------------------CCCcceEEeeeEc-CCCeE
Confidence 1334 67889999 99999
Q ss_pred eeeccCcEEE-EeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEE
Q 001336 755 LALASNAVHK-LWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLF 832 (1097)
Q Consensus 755 ~~~~~dg~i~-vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iw 832 (1097)
++++.++.+. +|++. ++.... +.+ |...+..++|||||++|++++ ++.|++|
T Consensus 352 ~~~s~~~~l~~~~d~~----------------------~~~~~~--l~~--~~~~~~~~~~SpDG~~la~~~~~~~v~~~ 405 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYR----------------------TGKAEK--FEE--NLGNVFAMGVDRNGKFAVVANDRFEIMTV 405 (1045)
T ss_dssp EEEETTEEEEEEEETT----------------------TCCEEE--CCC--CCCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEECCCceEEEEECC----------------------CCCceE--ecC--CccceeeeEECCCCCEEEEECCCCeEEEE
Confidence 9988877777 77654 233222 222 778899999999999999998 8899999
Q ss_pred EcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCC----------cEEEEEcccceEEEEecccccCeEEEEEecCC
Q 001336 833 NMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDS----------SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTL 902 (1097)
Q Consensus 833 d~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg----------~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg 902 (1097)
|+.+++....+.+|...+.+++|+| |+++|++++.++ .|++||+.+++ +..+..|...+..++|+|||
T Consensus 406 d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG 483 (1045)
T 1k32_A 406 DLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADS 483 (1045)
T ss_dssp ETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTS
T ss_pred ECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCC
Confidence 9999998888878999999999999 899998887654 89999999888 77788898889999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCcccce---ee--Eee-----------------------cCCC-------CCCccCCeEEE
Q 001336 903 NVLVSSGADSQLCVWSTDGWEKQAS---KF--LTI-----------------------PNGR-------TASALADTRVQ 947 (1097)
Q Consensus 903 ~~l~s~~~Dg~i~iwd~~~~~~~~~---~~--~~~-----------------------~~~~-------~~~~~~v~~l~ 947 (1097)
++|++++.++...+|+......... .. +.. ..+. ......+..++
T Consensus 484 ~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~ 563 (1045)
T 1k32_A 484 KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMII 563 (1045)
T ss_dssp CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEE
T ss_pred CEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheE
Confidence 9999999988888887543221000 00 000 0000 00114578899
Q ss_pred EcCCCcEEEE------------E--eCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCC
Q 001336 948 FHLDQTHLLA------------V--HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAS 1013 (1097)
Q Consensus 948 ~s~dg~~l~~------------~--~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~ 1013 (1097)
++|||.++++ + ....|.+||+.+++..... ..+.+++|||||++|++++.| .|++||+.
T Consensus 564 ~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~ 636 (1045)
T 1k32_A 564 PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRKDD-GKIYTFPL 636 (1045)
T ss_dssp ECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEETT-SCEEEEES
T ss_pred EcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee------cCcceEEECCCCCEEEEEcCC-cEEEEeCc
Confidence 9999997774 1 2457899999988753322 468899999999999998866 79999998
Q ss_pred CCc
Q 001336 1014 TLR 1016 (1097)
Q Consensus 1014 ~~~ 1016 (1097)
+++
T Consensus 637 ~~~ 639 (1045)
T 1k32_A 637 EKP 639 (1045)
T ss_dssp SCT
T ss_pred cCc
Confidence 876
No 40
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.3e-35 Score=325.83 Aligned_cols=289 Identities=19% Similarity=0.301 Sum_probs=255.0
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 456 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 456 (1097)
+.+|...|++++|+|++++||+|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWD 93 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEE
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEEE
Confidence 68999999999999999999999999999999999887554 4789999999999999999 899999999999999
Q ss_pred CCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCC
Q 001336 457 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 536 (1097)
Q Consensus 457 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 536 (1097)
+.+++++..+.+|...|.+++|+ +++.+|++++.|+.|++||+++.+....+..+...|.+++|+|+++++++++.++
T Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
T 4ery_A 94 VSSGKCLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171 (312)
T ss_dssp TTTCCEEEEEECCSSCEEEEEEC--SSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCcEEEEEcCCCCCEEEEEEc--CCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 99999999999999999999995 4568999999999999999999888888888888999999999999999998654
Q ss_pred CCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEc-C
Q 001336 537 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN-K 615 (1097)
Q Consensus 537 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-~ 615 (1097)
.|++||+++++.+..+.......+..++|+|++++|++++.|+.|++||+.+++.+..+..+..........++ +
T Consensus 172 ----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 172 ----LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp ----CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred ----cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence 69999999999888876666568999999999999999999999999999999999998876443333344444 5
Q ss_pred CCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCC
Q 001336 616 EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND 695 (1097)
Q Consensus 616 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1097)
++.+|++|+.||.|++||+.++ +.+..+.
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~-------------------------------------------------- 276 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTK-EIVQKLQ-------------------------------------------------- 276 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTC-CEEEEEC--------------------------------------------------
T ss_pred CCcEEEEECCCCEEEEEECCCc-hhhhhhh--------------------------------------------------
Confidence 7889999999999999999877 3443332
Q ss_pred CCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeec--cCcEEEEecc
Q 001336 696 SRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA--SNAVHKLWKW 768 (1097)
Q Consensus 696 ~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~--~dg~i~vw~~ 768 (1097)
+|...|.+++|+|++..+++++ .|+.|++|+.
T Consensus 277 -----------------------------------------~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 277 -----------------------------------------GHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp -----------------------------------------CCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred -----------------------------------------ccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 2667899999999999999886 6999999974
No 41
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.6e-35 Score=331.48 Aligned_cols=300 Identities=18% Similarity=0.294 Sum_probs=241.1
Q ss_pred eEEEEee-cCCCeeEEEE-----cc-CCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCC
Q 001336 311 TVVMTLN-QGSAVKSMDF-----HP-VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 383 (1097)
Q Consensus 311 ~~~~~~~-h~~~V~~v~f-----sp-dg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 383 (1097)
.+..++. |...|++++| ++ +++ +|++|+.|++|+|||+.+++...... .....+.+|...
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~~------------~~~~~l~~h~~~ 78 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYFG------------IPHKALTGHNHF 78 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBSE------------EEEEEECCCSSC
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccccc------------cccchhccCCCc
Confidence 3455666 9999999999 77 777 56999999999999998654211000 011137899999
Q ss_pred eEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001336 384 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ 463 (1097)
Q Consensus 384 V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~ 463 (1097)
|.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+. +...
T Consensus 79 V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~-~~~~ 152 (343)
T 2xzm_R 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNIL-GECK 152 (343)
T ss_dssp EEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESS-SCEE
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEecc-CCce
Confidence 9999999999999999999999999999987665 5789999999999999999 89999999999999987 4444
Q ss_pred EEee---cCCcCeEEEeecccCC--------ccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEe
Q 001336 464 YIFE---GHESPVYSICPHHKEN--------IQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC 532 (1097)
Q Consensus 464 ~~~~---~h~~~v~~~~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 532 (1097)
..+. +|...|.+++|++... +.++++++.|+.|++||. .......+..|...|.+++|+|+|++|+++
T Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg 231 (343)
T 2xzm_R 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATG 231 (343)
T ss_dssp EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEE
Confidence 4443 7899999999966432 268999999999999994 345556677888899999999999999999
Q ss_pred eeCCCCCceEEEEeCCC-CeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--EEec--------
Q 001336 533 GTNKEGESYLVEWNESE-GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA--SIDA-------- 601 (1097)
Q Consensus 533 ~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~-------- 601 (1097)
+.| +.|++||+.. ......+.. . ..+.+++|+|++.++++ +.|+.|++|++.+++... .+..
T Consensus 232 s~d----g~v~iwd~~~~~~~~~~~~~-~-~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 304 (343)
T 2xzm_R 232 GKD----KKLLIWDILNLTYPQREFDA-G-STINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEG 304 (343)
T ss_dssp ETT----CEEEEEESSCCSSCSEEEEC-S-SCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTT
T ss_pred cCC----CeEEEEECCCCcccceeecC-C-CcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhh
Confidence 864 4799999944 444444432 2 26999999999987764 457889999998876544 3331
Q ss_pred -CCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 602 -DGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 602 -~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
.++...|.+++|+|+|.+|++|+.||.|++|++.++
T Consensus 305 ~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 305 QKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp BCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 134667999999999999999999999999998765
No 42
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.3e-35 Score=330.40 Aligned_cols=303 Identities=19% Similarity=0.255 Sum_probs=259.4
Q ss_pred ceEEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEE
Q 001336 310 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 388 (1097)
Q Consensus 310 ~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 388 (1097)
..+..+|. |.+.|++|+|+|++..+|++|+.||+|+|||+.+++....... ..+.+|...|.+++
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~--------------~~l~~h~~~V~~~~ 93 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ--------------RALRGHSHFVSDVV 93 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEE--------------EEECCCSSCEEEEE
T ss_pred eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceee--------------EEEeCCCCCEEEEE
Confidence 35556777 9999999999999655789999999999999987654332211 13688999999999
Q ss_pred EccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee-EEee
Q 001336 389 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ-YIFE 467 (1097)
Q Consensus 389 ~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~ 467 (1097)
|+|++++|++|+.|+.|++|+...+.... ....+...+..+.+++++. +|++++.|+.+++||+...... ..+.
T Consensus 94 ~s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~ 168 (340)
T 4aow_A 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDE 168 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred ECCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEec
Confidence 99999999999999999999999876554 3567888999999999999 7999999999999998766543 4567
Q ss_pred cCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeC
Q 001336 468 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 547 (1097)
Q Consensus 468 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 547 (1097)
+|...+..++|++.+...++++++.|+.|++||+++......+..+...|.+++|+|++++|++++.| +.|++||+
T Consensus 169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D----g~i~iwd~ 244 (340)
T 4aow_A 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKD----GQAMLWDL 244 (340)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT----CEEEEEET
T ss_pred cccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCC----CeEEEEEe
Confidence 89999999999888777889999999999999999998888888899999999999999999999864 47999999
Q ss_pred CCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEec-------CCCCCCcceEEEcCCCCEE
Q 001336 548 SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA-------DGGLQASPCIRFNKEGILL 620 (1097)
Q Consensus 548 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~v~~s~~~~~l 620 (1097)
.+.+.+..+..+. .+.+++|+|++. +++++.|+.|++||++++..+..+.. ..+...|++++|+|++++|
T Consensus 245 ~~~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 321 (340)
T 4aow_A 245 NEGKHLYTLDGGD--IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTL 321 (340)
T ss_dssp TTTEEEEEEECSS--CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEE
T ss_pred ccCceeeeecCCc--eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEE
Confidence 9999999888764 789999999875 55666799999999999888777643 2456789999999999999
Q ss_pred EEEECCCcEEEEEcCCCc
Q 001336 621 AVSTNDNGIKILANADGI 638 (1097)
Q Consensus 621 ~s~~~dg~i~iw~~~~~~ 638 (1097)
++|+.||.|+||++.+|.
T Consensus 322 ~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 322 FAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEETTSCEEEEEEEC--
T ss_pred EEEeCCCEEEEEeCCCcC
Confidence 999999999999999873
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9.7e-36 Score=332.91 Aligned_cols=286 Identities=13% Similarity=0.154 Sum_probs=242.7
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
+...|.+++|+|||+.+ +++..++.+.+|+......... ..+|...|++++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~~~-~~~~~~~~~~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQ-PVPFPPDALIGPGIPRHARQIN-------------------TLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSCEE-ECCCCTTSSSSTTCCSEEEEEE-------------------EECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCCEE-EeecCCCcEeccccCCccccce-------------------eccCCCceEEEEEecCCcEEE
Confidence 56789999999999965 5666666666665443322211 347999999999999999999
Q ss_pred EEECCCEEEEEEccCCeeeeeeeeee--cccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCc--eeEEeecCCcCe
Q 001336 398 VAYSKHIVHLYTYHGGDELRNHLEIE--AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT--KQYIFEGHESPV 473 (1097)
Q Consensus 398 s~~~dg~i~iwd~~~~~~~~~~~~l~--~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h~~~v 473 (1097)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+..|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 999 9999999999876544433444 7999999999999999 89999999999999999887 667888999999
Q ss_pred EEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeee
Q 001336 474 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 553 (1097)
Q Consensus 474 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 553 (1097)
.+++|+ +++.++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++.+ +.|++||+++++.+
T Consensus 145 ~~~~~~--~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAIS--PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD----NTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT----SEEEEEETTTTEEE
T ss_pred EEEEEC--CCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC----CcEEEEECCCCceE
Confidence 999995 466899999999999999999988888888888899999999999999999864 47999999999988
Q ss_pred EEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEE
Q 001336 554 RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 633 (1097)
Q Consensus 554 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~ 633 (1097)
..+.. . ..+.+++|+|+++++++++.|+.|++||+.+++.. .+. .+...|.+++|+|++++|++++.||.|++|+
T Consensus 219 ~~~~~-~-~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 219 QQHDF-T-SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEC-S-SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeecC-C-CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEc--CCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 87753 3 37999999999999999999999999999988764 344 3467899999999999999999999999999
Q ss_pred cCCC
Q 001336 634 NADG 637 (1097)
Q Consensus 634 ~~~~ 637 (1097)
+.++
T Consensus 294 ~~~~ 297 (337)
T 1gxr_A 294 TPYG 297 (337)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 9877
No 44
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.1e-35 Score=328.09 Aligned_cols=293 Identities=12% Similarity=0.198 Sum_probs=234.6
Q ss_pred eeeEEecCCCCcceEEEEE-----cC-CCCEEEEEeCCCcEEEEECCCC-------ceEEEEecCCCCCCcceEEEcCCC
Q 001336 551 AVKRTYHGLGKRSVGVVQF-----DT-TKNRFLAAGDEFMIKFWDMDNV-------NLLASIDADGGLQASPCIRFNKEG 617 (1097)
Q Consensus 551 ~~~~~~~~~~~~~v~~~~~-----~~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~v~~v~~s~~~ 617 (1097)
+....+.+|.. .|.+++| ++ ++++|++|+.|++|++||+.++ .+...+.+| ...|.+++|+|++
T Consensus 12 ~~~~~l~gH~~-~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h--~~~V~~~~~~~~~ 88 (343)
T 2xzm_R 12 VKRGILEGHSD-WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH--NHFVSDLALSQEN 88 (343)
T ss_dssp EEEEEEECCSS-CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCC--SSCEEEEEECSST
T ss_pred eeeeeeccchh-hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccC--CCceEEEEECCCC
Confidence 45667888887 9999999 66 8999999999999999999753 345556544 7789999999999
Q ss_pred CEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCC
Q 001336 618 ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSR 697 (1097)
Q Consensus 618 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1097)
.++++++.|++|++||+.++ +....+.
T Consensus 89 ~~l~s~s~D~~v~lwd~~~~-~~~~~~~---------------------------------------------------- 115 (343)
T 2xzm_R 89 CFAISSSWDKTLRLWDLRTG-TTYKRFV---------------------------------------------------- 115 (343)
T ss_dssp TEEEEEETTSEEEEEETTSS-CEEEEEE----------------------------------------------------
T ss_pred CEEEEEcCCCcEEEEECCCC-cEEEEEc----------------------------------------------------
Confidence 99999999999999998766 1111110
Q ss_pred CccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccC
Q 001336 698 NFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTG 777 (1097)
Q Consensus 698 ~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~ 777 (1097)
T Consensus 116 -------------------------------------------------------------------------------- 115 (343)
T 2xzm_R 116 -------------------------------------------------------------------------------- 115 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeC---CCCCCeEEE
Q 001336 778 KATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFM---PPPPAATFL 853 (1097)
Q Consensus 778 ~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~---~~~~~i~~l 853 (1097)
+|...|.+++|+|++++|++++ |++|++||+.. ....... +|...|.++
T Consensus 116 --------------------------~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~ 168 (343)
T 2xzm_R 116 --------------------------GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCV 168 (343)
T ss_dssp --------------------------CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEE
T ss_pred --------------------------CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeee
Confidence 1666777777777777777777 77788887763 3333332 678889999
Q ss_pred EEeCCCC----------CEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc
Q 001336 854 AFHPQDN----------NIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 923 (1097)
Q Consensus 854 ~~sp~~~----------~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~ 923 (1097)
+|+| ++ .++++++.||.|++|| .+++....+.+|...|++++|+|+|++|++++.|+.|++||+....
T Consensus 169 ~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 169 RYSP-IMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp EECC-CCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred eecc-ccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999 55 7999999999999999 4567788899999999999999999999999999999999995433
Q ss_pred ccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceee--eee---------ccCCCCCEEEEEEe
Q 001336 924 KQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLK--QFV---------PREASGPITHATYS 992 (1097)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~--~~~---------~~~h~~~v~~v~~s 992 (1097)
.... .+ ..+ ..|.+++|+|++.+++++.|+.|++|++.+++... .+. ..+|...|.+++|+
T Consensus 247 ~~~~-~~--~~~-----~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 318 (343)
T 2xzm_R 247 YPQR-EF--DAG-----STINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN 318 (343)
T ss_dssp SCSE-EE--ECS-----SCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred ccce-ee--cCC-----CcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence 2111 11 111 34899999999999998999999999998877654 222 12688899999999
Q ss_pred cCCCEEEEEecCCeEEEEeCCCCc
Q 001336 993 CDSQSIYVAFEEGSVGVLTASTLR 1016 (1097)
Q Consensus 993 ~dg~~l~s~s~Dg~v~vwd~~~~~ 1016 (1097)
|+|++|++|+.||+|++|+++++.
T Consensus 319 p~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 319 ALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp SSSCCEEEEETTSEEEEEEEEEEE
T ss_pred CCCCeEEEecCCceEEEEEEEccC
Confidence 999999999999999999987653
No 45
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-35 Score=324.06 Aligned_cols=306 Identities=16% Similarity=0.195 Sum_probs=233.3
Q ss_pred CCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEEEEecCCCCCCcceEEEcCCCCEEEEEECC
Q 001336 549 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV--NLLASIDADGGLQASPCIRFNKEGILLAVSTND 626 (1097)
Q Consensus 549 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d 626 (1097)
..+++..+.+|.. .|.+++|+++ +|++++.|+.|++||+.++ +.+..+...+|...|.+++|+|++.+|++++.|
T Consensus 3 ~~~~~~~~~~h~~-~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 3 SINLIKSLKLYKE-KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCEEEEEEECCSS-CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccceeeccCCC-ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 4566788888887 8999999987 9999999999999999875 344555332357789999999999999999999
Q ss_pred CcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCccc
Q 001336 627 NGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKI 706 (1097)
Q Consensus 627 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (1097)
++|++|+....... ..
T Consensus 80 ~~v~iw~~~~~~~~--~~-------------------------------------------------------------- 95 (330)
T 2hes_X 80 STVSIWAKEESADR--TF-------------------------------------------------------------- 95 (330)
T ss_dssp SCEEEEEC---------C--------------------------------------------------------------
T ss_pred CcEEEEEcccCcCc--cc--------------------------------------------------------------
Confidence 99999997532000 00
Q ss_pred ccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCc
Q 001336 707 ADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQ 786 (1097)
Q Consensus 707 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 786 (1097)
..+ .+..
T Consensus 96 -------------------------------------------~~~---------~~~~--------------------- 102 (330)
T 2hes_X 96 -------------------------------------------EMD---------LLAI--------------------- 102 (330)
T ss_dssp -------------------------------------------CCE---------EEEE---------------------
T ss_pred -------------------------------------------cce---------eEEE---------------------
Confidence 000 0000
Q ss_pred ccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCC----CceeEEeCCCCCCeEEEEEeCCCCC
Q 001336 787 LWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMT----FKTMTTFMPPPPAATFLAFHPQDNN 861 (1097)
Q Consensus 787 ~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~~~~ 861 (1097)
+. +|...|.+++|+|+|++|++++ |++|++||+.. .+++..+.+|...|.+++|+| ++.
T Consensus 103 -------------~~--~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~ 166 (330)
T 2hes_X 103 -------------IE--GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEA 166 (330)
T ss_dssp -------------EC------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSS
T ss_pred -------------Ec--CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCC
Confidence 11 2788889999999999999988 88999999842 356778899999999999999 899
Q ss_pred EEEEEECCCcEEEEEcccc--eEEEEecccccCeEEEEEecC--CCEEEEEeCCCcEEEEEcCCCcccc---eeeEeecC
Q 001336 862 IIAIGMEDSSIQIYNVRVD--EVKTKLKGHQKRITGLAFSNT--LNVLVSSGADSQLCVWSTDGWEKQA---SKFLTIPN 934 (1097)
Q Consensus 862 ~la~g~~dg~v~vwd~~~~--~~~~~l~~h~~~V~~l~~s~d--g~~l~s~~~Dg~i~iwd~~~~~~~~---~~~~~~~~ 934 (1097)
+|++|+.|++|++||..++ +++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+..+.... ........
T Consensus 167 ~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 246 (330)
T 2hes_X 167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP 246 (330)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc
Confidence 9999999999999999876 678899999999999999998 7799999999999999987643211 12222222
Q ss_pred C-CCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcce--eeeeeccCCCC-CEEEEEEec--CCCEEEEEecCCeEE
Q 001336 935 G-RTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLEC--LKQFVPREASG-PITHATYSC--DSQSIYVAFEEGSVG 1008 (1097)
Q Consensus 935 ~-~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~--~~~~~~~~h~~-~v~~v~~s~--dg~~l~s~s~Dg~v~ 1008 (1097)
+ |. ..|.+++|++++.++..+.|+.|++||..+++. .... ..+|.. .|.+++|+| |+++|++|+.||+|+
T Consensus 247 ~~h~---~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~ 322 (330)
T 2hes_X 247 DVHK---RQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKR-ALCHGVYEINVVKWLELNGKTILATGGDDGIVN 322 (330)
T ss_dssp SCCS---SCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEE-SCTTTTSCEEEEEEC-----CCEEEEETTSEEE
T ss_pred cccc---cceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecc-ccccccceEEEEEEecCCCceEEEEecCCCcEE
Confidence 2 33 579999999877544447899999999987742 2222 236776 899999999 799999999999999
Q ss_pred EEeCCC
Q 001336 1009 VLTAST 1014 (1097)
Q Consensus 1009 vwd~~~ 1014 (1097)
+|++++
T Consensus 323 ~W~~~~ 328 (330)
T 2hes_X 323 FWSLEK 328 (330)
T ss_dssp EEEC--
T ss_pred EEEecc
Confidence 999865
No 46
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.5e-34 Score=323.16 Aligned_cols=316 Identities=14% Similarity=0.159 Sum_probs=264.9
Q ss_pred ccceeeCCCCCCcceeecCCC--------CceEEEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeee
Q 001336 288 ILPVAYTPQSLGQSSYSTDDL--------PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKS 359 (1097)
Q Consensus 288 ~~~~~~s~~~~~~~~~~~~~~--------~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~ 359 (1097)
+.+++|+|+|+.++....++. ....+..+.|...|++++|+|++++ +++++ ||.|+|||+.+++.....
T Consensus 12 v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~~~~-dg~i~iw~~~~~~~~~~~- 88 (337)
T 1gxr_A 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISHPGNKSPV- 88 (337)
T ss_dssp CCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSE-EEEEC-BSEEEEEETTSTTCCSCS-
T ss_pred eeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcE-EEEcC-CCeEEEEECCCCCceeee-
Confidence 347889999998765543221 2345566679999999999999995 47777 999999999887643210
Q ss_pred eeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCC
Q 001336 360 FKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 439 (1097)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~ 439 (1097)
. .....+|...|.+++|+|++++|++++.||.|++||+.+++.. ....+.+|...|.+++|+|+++
T Consensus 89 -~------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~ 154 (337)
T 1gxr_A 89 -S------------QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK 154 (337)
T ss_dssp -E------------EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS
T ss_pred -e------------cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccCCCceEEEEECCCCC
Confidence 0 0012378999999999999999999999999999999987632 2335778999999999999999
Q ss_pred cEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEE
Q 001336 440 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM 519 (1097)
Q Consensus 440 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 519 (1097)
++++++.|+.|++||+.+++.+..+.+|...|.+++|+ +++.+|++++.||.|++||+++.+....+. +...+.+
T Consensus 155 --~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~ 229 (337)
T 1gxr_A 155 --VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS--NDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFS 229 (337)
T ss_dssp --EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEE
T ss_pred --EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEEC--CCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEE
Confidence 89999999999999999999999999999999999995 466899999999999999999877666554 5668999
Q ss_pred EEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001336 520 MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI 599 (1097)
Q Consensus 520 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 599 (1097)
++|+|+++++++++.++ .|++||+.+++.. .+..|.. .+.+++|+|++++|++++.||.|++||+.+++.+...
T Consensus 230 ~~~s~~~~~l~~~~~~~----~i~~~~~~~~~~~-~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~ 303 (337)
T 1gxr_A 230 LGYCPTGEWLAVGMESS----NVEVLHVNKPDKY-QLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 303 (337)
T ss_dssp EEECTTSSEEEEEETTS----CEEEEETTSSCEE-EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEECCCCCEEEEEcCCC----cEEEEECCCCCeE-EEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe
Confidence 99999999999987644 6999999988754 5666665 8999999999999999999999999999999888665
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001336 600 DADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 634 (1097)
Q Consensus 600 ~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~ 634 (1097)
. +...+.+++|+|++++|++++.||.|++|++
T Consensus 304 ~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 304 K---ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp E---CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred c---CCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 4 2567999999999999999999999999986
No 47
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=351.73 Aligned_cols=338 Identities=13% Similarity=0.209 Sum_probs=269.3
Q ss_pred ceEEEEEcCCCC-EEEEE----------eCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEE
Q 001336 563 SVGVVQFDTTKN-RFLAA----------GDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI 631 (1097)
Q Consensus 563 ~v~~~~~~~~~~-~l~~~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~i 631 (1097)
.+.+++|+|++. +++++ +.|+.|++||+.+++....+....+...|.+++|+|++.+|++++.||.|++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 577899999986 89998 8899999999998763322222234678999999999999999999999999
Q ss_pred EEcCCC---ceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCccccc
Q 001336 632 LANADG---IRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIAD 708 (1097)
Q Consensus 632 w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1097)
|++.+. ......+
T Consensus 94 w~~~~~~~~~~~~~~~---------------------------------------------------------------- 109 (416)
T 2pm9_A 94 YSTNEANNAINSMARF---------------------------------------------------------------- 109 (416)
T ss_dssp ECCSSTTSCCCEEEEC----------------------------------------------------------------
T ss_pred eecccccccccchhhc----------------------------------------------------------------
Confidence 998762 1111111
Q ss_pred ccccccccccccccCCCceeeEeccCCCcCccceEEEEEccC-CceeeeeccCcEEEEeccCCCCCCccCccccccCCcc
Q 001336 709 EAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS-GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQL 787 (1097)
Q Consensus 709 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 787 (1097)
.+|...|.+++|+|+ +++|++++.||.|++|++..........
T Consensus 110 ---------------------------~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--------- 153 (416)
T 2pm9_A 110 ---------------------------SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY--------- 153 (416)
T ss_dssp ---------------------------CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC---------
T ss_pred ---------------------------cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc---------
Confidence 137788999999998 8999999999999999887432100000
Q ss_pred cCCCCCccccccCCCCCCCCCeeEEEEccC-CCEEEEEe-CCeEEEEEcCCCceeEEeCCC------CCCeEEEEEeCCC
Q 001336 788 WQPPSGILMTNDISDTNPEDAVPCFALSKN-DSYVMSAS-GGKISLFNMMTFKTMTTFMPP------PPAATFLAFHPQD 859 (1097)
Q Consensus 788 w~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~la~~s-dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~~ 859 (1097)
......... .|...|.+++|+|+ +.+|++++ |+.|++||+.+++.+..+..+ ...|.+++|+|++
T Consensus 154 -----~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (416)
T 2pm9_A 154 -----TPLTPGQSM--SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN 226 (416)
T ss_dssp -----CCBCCCCSC--CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC
T ss_pred -----ccccccccc--CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC
Confidence 000000112 38899999999999 78999988 999999999999999998876 7889999999943
Q ss_pred CCEEEEEECCC---cEEEEEcccc-eEEEEec-ccccCeEEEEEec-CCCEEEEEeCCCcEEEEEcCCCcccceeeEeec
Q 001336 860 NNIIAIGMEDS---SIQIYNVRVD-EVKTKLK-GHQKRITGLAFSN-TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIP 933 (1097)
Q Consensus 860 ~~~la~g~~dg---~v~vwd~~~~-~~~~~l~-~h~~~V~~l~~s~-dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~ 933 (1097)
..++++++.|+ .|++||+.++ +.+..+. +|...|++++|+| ++.+|++++.|+.|++||+.+++. +...
T Consensus 227 ~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~-----~~~~ 301 (416)
T 2pm9_A 227 STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ-----LSQF 301 (416)
T ss_dssp TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE-----EEEE
T ss_pred CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc-----ceee
Confidence 47999999999 9999999986 6677888 8999999999999 999999999999999999998652 2333
Q ss_pred CCCCCCccCCeEEEEcCCC-cEEEE-EeCCeEEEEeCCCcceeeeee---------------c-----------------
Q 001336 934 NGRTASALADTRVQFHLDQ-THLLA-VHETQIAIYEAPKLECLKQFV---------------P----------------- 979 (1097)
Q Consensus 934 ~~~~~~~~~v~~l~~s~dg-~~l~~-~~d~~v~vwd~~~~~~~~~~~---------------~----------------- 979 (1097)
.+|. ..|.+++|+|++ .+|++ +.|+.|++||+.+++...... .
T Consensus 302 ~~~~---~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (416)
T 2pm9_A 302 PARG---NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQA 378 (416)
T ss_dssp ECSS---SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCC
T ss_pred cCCC---CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccC
Confidence 3333 569999999999 78888 589999999998776433221 0
Q ss_pred -cCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCC
Q 001336 980 -REASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL 1015 (1097)
Q Consensus 980 -~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~ 1015 (1097)
..|...+.+++|+|||++|++++.|++|+||++.+.
T Consensus 379 ~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 379 PTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 116778889999999999999999999999999864
No 48
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.2e-33 Score=363.71 Aligned_cols=530 Identities=11% Similarity=0.053 Sum_probs=376.0
Q ss_pred CCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCC------CcEE
Q 001336 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED------RVIK 453 (1097)
Q Consensus 380 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d------~~i~ 453 (1097)
+...+.+.+||| +.||.++. +.|++|++.+++.. .+.+|...+.+++|||||+ .|++++.+ ..|+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence 456889999995 58888876 68999999987643 3778999999999999999 67766543 4899
Q ss_pred EEECCCCceeEEeecCCcCe-------EEEeecccCCccEEEEEcCC------CeEEEEEcCCCCceeeecCCCCceEEE
Q 001336 454 VWDAVTGTKQYIFEGHESPV-------YSICPHHKENIQFIFSTATD------GKIKAWLYDNLGSRVDYDAPGHSSTMM 520 (1097)
Q Consensus 454 iwd~~~~~~~~~~~~h~~~v-------~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~ 520 (1097)
+||+.+++ ...+..|...+ ..++|+ +||+++++++.+ ..|..|++..+...... . .....+
T Consensus 84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~S--pDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~-~--~~~~~~ 157 (1045)
T 1k32_A 84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFD--PDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN-L--GPATHI 157 (1045)
T ss_dssp EEETTTTE-EEECCCCCEEEETTEECSEEEEEC--TTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC-S--CSCSEE
T ss_pred EEECCCCC-eEEcccCCCcccccccccccccCC--CCCEEEEEECCcCCCcccceEEEEECCCCCeEEec-C--CCccee
Confidence 99988876 67788888888 889885 555777777754 35777777655433222 2 234467
Q ss_pred EEccCCCEEEEeeeCCC--------CCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001336 521 AYSADGARLFSCGTNKE--------GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 592 (1097)
Q Consensus 521 ~~s~~~~~l~~~~~~~~--------~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 592 (1097)
+|+| | ++++++.+.+ +.....+|....+.....+.+|.. .+.++.|+++ ..+++++.|+.+.+|.++.
T Consensus 158 ~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~-~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~ 233 (1045)
T 1k32_A 158 LFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMST-HVSSPVIVGH-RIYFITDIDGFGQIYSTDL 233 (1045)
T ss_dssp EEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSS-CCEEEEEETT-EEEEEECTTSSCEEEEEET
T ss_pred eeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCC-cccceEEeCC-EEEEEEeccCceEEEEEeC
Confidence 7999 8 7777643211 112344443322233445566665 8999999988 5667777889999998653
Q ss_pred -CceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccC
Q 001336 593 -VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSA 671 (1097)
Q Consensus 593 -~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1097)
+.....+..+. .+...+|+|+|+.|+++. ++.|++|+.... . +..+..+....
T Consensus 234 ~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~-l~~l~~~~~~~-------------------- 287 (1045)
T 1k32_A 234 DGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-K-IEKIEIGDLES-------------------- 287 (1045)
T ss_dssp TSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-C-EEECCCCCCCB--------------------
T ss_pred CCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEEecCCce-E-eeeeccCcccc--------------------
Confidence 44445554432 467889999999998874 889999998432 2 21222110000
Q ss_pred ccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEc-cC
Q 001336 672 NANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYT-NS 750 (1097)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-pd 750 (1097)
. ... ..+...+.+++|+ ||
T Consensus 288 -----------------------------------------~------------~~~-------~~~~~~v~~~~~S~pd 307 (1045)
T 1k32_A 288 -----------------------------------------P------------EDR-------IISIPSKFAEDFSPLD 307 (1045)
T ss_dssp -----------------------------------------C------------CSE-------EEECGGGGEEEEEECG
T ss_pred -----------------------------------------c------------ccc-------cccccccceeeecCCC
Confidence 0 000 0145668899999 99
Q ss_pred CceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCC-CeeEEEEccCCCEEEEEe-CCe
Q 001336 751 GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPED-AVPCFALSKNDSYVMSAS-GGK 828 (1097)
Q Consensus 751 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~-~v~~l~~s~dg~~la~~s-dg~ 828 (1097)
|+.|++++ ++.+.+|++. .+.... +.. |.. .+..++|+ ||+.|+.++ ++.
T Consensus 308 G~~la~~~-~~~i~~~~~~----------------------~~~~~~--~~~--~~~~~~~~~~~s-dg~~l~~~s~~~~ 359 (1045)
T 1k32_A 308 GDLIAFVS-RGQAFIQDVS----------------------GTYVLK--VPE--PLRIRYVRRGGD-TKVAFIHGTREGD 359 (1045)
T ss_dssp GGCEEEEE-TTEEEEECTT----------------------SSBEEE--CSC--CSCEEEEEECSS-SEEEEEEEETTEE
T ss_pred CCEEEEEE-cCEEEEEcCC----------------------CCceEE--ccC--CCcceEEeeeEc-CCCeEEEEECCCc
Confidence 99999887 7788888654 232222 222 556 88999999 999999998 677
Q ss_pred EE-EEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEE
Q 001336 829 IS-LFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVS 907 (1097)
Q Consensus 829 i~-iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s 907 (1097)
+. +|++.+++.. .+.+|...+..++|+| |+++|++++.++.|++||+.+++....+.+|.+.+.+++|||||++|++
T Consensus 360 l~~~~d~~~~~~~-~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~ 437 (1045)
T 1k32_A 360 FLGIYDYRTGKAE-KFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAY 437 (1045)
T ss_dssp EEEEEETTTCCEE-ECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEE
T ss_pred eEEEEECCCCCce-EecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEE
Confidence 88 9999877654 4447888999999999 9999999999999999999999988888789999999999999999998
Q ss_pred EeCCC----------cEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEEEEeCCCcce---
Q 001336 908 SGADS----------QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLEC--- 973 (1097)
Q Consensus 908 ~~~Dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~vwd~~~~~~--- 973 (1097)
++.++ .|++||+.+++ ...+ ..+. ..+..++|+|||++|+.+ .++...+|+......
T Consensus 438 ~~~~~~~~~~~~~~~~i~l~d~~~g~-----~~~l-~~~~---~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~ 508 (1045)
T 1k32_A 438 GFPLKHGETDGYVMQAIHVYDMEGRK-----IFAA-TTEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFE 508 (1045)
T ss_dssp EEEECSSTTCSCCEEEEEEEETTTTE-----EEEC-SCSS---SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECC
T ss_pred EecCccccccCCCCCeEEEEECCCCc-----EEEe-eCCC---cccCCceEcCCCCEEEEEecccCCcCcchhccccccc
Confidence 87654 89999998854 1222 2222 346789999999999884 445555555332211
Q ss_pred --------------------------------------eeeeeccCCCCCEEEEEEecCCCEEEE-------------Ee
Q 001336 974 --------------------------------------LKQFVPREASGPITHATYSCDSQSIYV-------------AF 1002 (1097)
Q Consensus 974 --------------------------------------~~~~~~~~h~~~v~~v~~s~dg~~l~s-------------~s 1002 (1097)
........|.+.+..+++++||+++++ ..
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~ 588 (1045)
T 1k32_A 509 VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP 588 (1045)
T ss_dssp SCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCC
T ss_pred cCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccC
Confidence 011122246688999999999998875 12
Q ss_pred cCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCCC
Q 001336 1003 EEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1068 (1097)
Q Consensus 1003 ~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~~ 1068 (1097)
.+..|.+||+.+++..... ..+.. ++|+| |++.|++++.| .|++||+...+
T Consensus 589 ~~~~l~~~d~~~~~~~~l~-----------~~v~~--~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 589 EKGVLLKYDVKTRKVTEVK-----------NNLTD--LRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CCEEEEEEETTTCCEEEEE-----------EEEEE--EEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred CCceEEEEECCCCcEEEee-----------cCcce--EEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 3457888999888753222 22444 48889 78999988877 89999997765
No 49
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-36 Score=347.60 Aligned_cols=357 Identities=10% Similarity=0.118 Sum_probs=268.1
Q ss_pred CCCCCCeEEEEEcc-CCCEEEEEECCCEEEEEEccC---CeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEE
Q 001336 378 SDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHG---GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 453 (1097)
Q Consensus 378 ~~h~~~V~~v~~sp-d~~~las~~~dg~i~iwd~~~---~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 453 (1097)
.+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +........+ +|...|.+++|+|+++ +|++|+.|+.|+
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~ 136 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQII 136 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEE
Confidence 78999999999999 999999999999999999987 5433222223 5999999999999999 899999999999
Q ss_pred EEECC---CCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEE--EccCCCE
Q 001336 454 VWDAV---TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA--YSADGAR 528 (1097)
Q Consensus 454 iwd~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~s~~~~~ 528 (1097)
+||+. +++.+..+.+| .+..+.+++.. +...+.++. +++++.+
T Consensus 137 vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 137 VLKVNHYQQESEVKFLNCE--CIRKINLKNFG------------------------------KNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp EEEEEEEEETTEEEEEEEE--EEEEEEGGGGS------------------------------SCCCEEEEEEEECSSCEE
T ss_pred EEEeccccCCceeeccccc--eeEEEEccCcc------------------------------cccCceEEEEEEcCCCCE
Confidence 99994 77777777766 57777765432 112233333 6789999
Q ss_pred EEEeeeCCCCCceEEEEeCCCCeeeEEecC--CCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCC
Q 001336 529 LFSCGTNKEGESYLVEWNESEGAVKRTYHG--LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ 606 (1097)
Q Consensus 529 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 606 (1097)
+++++.+ +.|++||+++++.+..+.+ |.. .|.+++|+|++++|++++.||.|++||+++++++..+.. .+..
T Consensus 185 l~~~~~d----~~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~ 258 (437)
T 3gre_A 185 LVALTNL----SRVIIFDIRTLERLQIIENSPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF-GDHA 258 (437)
T ss_dssp EEEEETT----SEEEEEETTTCCEEEEEECCGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC-TTCE
T ss_pred EEEEeCC----CeEEEEeCCCCeeeEEEccCCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec-CCCC
Confidence 9998864 4799999999999999988 554 899999999999999999999999999999999988863 2245
Q ss_pred CcceEEEc----CCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccc
Q 001336 607 ASPCIRFN----KEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGER 682 (1097)
Q Consensus 607 ~v~~v~~s----~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1097)
.|.+++|+ +++.+|++++.||.|++||+.++ .....+.++...
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~-------------------------------- 305 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG-HCQYAFINSDEQ-------------------------------- 305 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT-EEEEEEESSSSC--------------------------------
T ss_pred ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC-cEEEEEEcCCCC--------------------------------
Confidence 79999655 46789999999999999999988 566655544322
Q ss_pred cccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcE
Q 001336 683 TAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAV 762 (1097)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~ 762 (1097)
+..+.|+|+++.+. +..
T Consensus 306 -----------------------------------------------------------~~~~~~~~~~~~l~----~~~ 322 (437)
T 3gre_A 306 -----------------------------------------------------------PSMEHFLPIEKGLE----ELN 322 (437)
T ss_dssp -----------------------------------------------------------CCGGGGSCBCSSGG----GCC
T ss_pred -----------------------------------------------------------Cccceecccccccc----cce
Confidence 22222334433220 000
Q ss_pred EEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeE
Q 001336 763 HKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMT 841 (1097)
Q Consensus 763 i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~ 841 (1097)
+.+..|...|.+++|+ ++++|++++ |+.|++||+.++++..
T Consensus 323 -------------------------------------~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 323 -------------------------------------FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp -------------------------------------CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred -------------------------------------ecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence 1111277889999999 889999998 9999999999999999
Q ss_pred EeCCCC---CCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecC--CCEEEEEeCCCcEEE
Q 001336 842 TFMPPP---PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNT--LNVLVSSGADSQLCV 916 (1097)
Q Consensus 842 ~~~~~~---~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d--g~~l~s~~~Dg~i~i 916 (1097)
.+.+|. ..+....+++ ...+++.. |+...+........|.+.|++++|+++ +.+|++++.||.|+|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~i 435 (437)
T 3gre_A 365 AVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGI 435 (437)
T ss_dssp EEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEE
T ss_pred EEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEE
Confidence 988764 3456667776 54444443 333334445566779999999999998 789999999999999
Q ss_pred EE
Q 001336 917 WS 918 (1097)
Q Consensus 917 wd 918 (1097)
|+
T Consensus 436 w~ 437 (437)
T 3gre_A 436 FQ 437 (437)
T ss_dssp EC
T ss_pred eC
Confidence 95
No 50
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.5e-35 Score=342.72 Aligned_cols=283 Identities=15% Similarity=0.157 Sum_probs=237.5
Q ss_pred CeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEE
Q 001336 321 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 400 (1097)
Q Consensus 321 ~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 400 (1097)
.+++++|+|+|++| ++|+.||.|++||+.+++.... +..| ..+....|+|++++||+|+
T Consensus 58 ~~~~~~~s~~g~~l-~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 58 AGKGNTFEKVGSHL-YKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp CCTTCEEEEEETTE-EEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEEE
T ss_pred cccceeeeecCCeE-EEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEEE
Confidence 45589999999975 8999999999999988765431 3444 4455567899999999999
Q ss_pred CCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecc
Q 001336 401 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH 480 (1097)
Q Consensus 401 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 480 (1097)
.||.|++||+.+++... .+.+|...|++++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|...|.+++|++
T Consensus 117 ~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 117 TEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp TTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred CCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 99999999999887554 4678999999999999999 899999999999999999999999999999999999954
Q ss_pred cCCccEEEEEcCCCeEEEEEcCCCCceeeecCC---C---------------------CceEEEEEccCCCEEEEeeeCC
Q 001336 481 KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP---G---------------------HSSTMMAYSADGARLFSCGTNK 536 (1097)
Q Consensus 481 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~---------------------~~v~~~~~s~~~~~l~~~~~~~ 536 (1097)
++.+|++++.|+.|++||+++.+....+..+ . ..+.+++|+|++++|++++.++
T Consensus 192 --~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 269 (420)
T 3vl1_A 192 --RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG 269 (420)
T ss_dssp --TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS
T ss_pred --CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC
Confidence 5689999999999999999988777766542 2 3344455688999999988644
Q ss_pred CCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCce-EEEEecCCCCCCcceEEEc
Q 001336 537 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVNL-LASIDADGGLQASPCIRFN 614 (1097)
Q Consensus 537 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s 614 (1097)
.|++||+++++.+..+...+...+.+++|+|++. +|++++.||.|++||+.+++. +..+..+ +...|.++.+
T Consensus 270 ----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~- 343 (420)
T 3vl1_A 270 ----VITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-EGTPINNVYF- 343 (420)
T ss_dssp ----CEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES-TTSCEEEEEE-
T ss_pred ----eEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-CCCCceEEEe-
Confidence 6999999999888887665555899999999998 999999999999999998754 6677653 2457777755
Q ss_pred CCCCEEEEEECCCcEEEEEcCCC
Q 001336 615 KEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 615 ~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
+++.+|++++.|+.|++|++...
T Consensus 344 ~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 344 AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp ETTEEEEEETTTEEEEEEEECCT
T ss_pred CCCCEEEEecCCccEEEEeccCC
Confidence 57889999999999999998764
No 51
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.3e-35 Score=338.12 Aligned_cols=345 Identities=12% Similarity=0.120 Sum_probs=280.6
Q ss_pred CCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001336 382 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 461 (1097)
Q Consensus 382 ~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~ 461 (1097)
..+++++|+|++++|++|+.||.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345689999999999999999999999998876433 34455 4455667899999 89999999999999999999
Q ss_pred eeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCce
Q 001336 462 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 541 (1097)
Q Consensus 462 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 541 (1097)
....+.+|...|.+++|++ ++.+|++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++.++ .
T Consensus 131 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~----~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDG----T 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTS----C
T ss_pred eeeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCC----c
Confidence 9999999999999999954 568999999999999999999988888888999999999999999999998654 6
Q ss_pred EEEEeCCCCeeeEEecCCC--CcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCE
Q 001336 542 LVEWNESEGAVKRTYHGLG--KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGIL 619 (1097)
Q Consensus 542 i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 619 (1097)
|++||+++++.+..+..+. ...+.++++.+.+... ... .+...+.+++|+|++.+
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~--~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHE--ISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGG--GCCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eee--cccCcccceEEcCCCCE
Confidence 9999999999999887642 2367777776654221 011 22457889999999999
Q ss_pred EEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCc
Q 001336 620 LAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNF 699 (1097)
Q Consensus 620 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1097)
|++++.||.|++||+.++.... .+
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~~-~~------------------------------------------------------- 285 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQTI-QL------------------------------------------------------- 285 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEEE-EE-------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCceeE-Ec-------------------------------------------------------
Confidence 9999999999999987651110 00
Q ss_pred cccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCcc
Q 001336 700 TDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKA 779 (1097)
Q Consensus 700 ~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 779 (1097)
T Consensus 286 -------------------------------------------------------------------------------- 285 (420)
T 3vl1_A 286 -------------------------------------------------------------------------------- 285 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCC-EEEEEe-CCeEEEEEcCCCce-eEEeCC-CCCCeEEEEE
Q 001336 780 TTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKT-MTTFMP-PPPAATFLAF 855 (1097)
Q Consensus 780 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~la~~s-dg~i~iwd~~~~~~-~~~~~~-~~~~i~~l~~ 855 (1097)
.. .|...|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.. |...|.++.+
T Consensus 286 --------------------~~--~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 343 (420)
T 3vl1_A 286 --------------------PS--KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF 343 (420)
T ss_dssp --------------------CC--TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE
T ss_pred --------------------cc--ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe
Confidence 00 1667788888998888 888888 88999999988754 666665 5677888866
Q ss_pred eCCCCCEEEEEECCCcEEEEEcccc---------eEEEEecccccCeEEEEEecCCC---EEEEEeCCCcEEEEEcCC
Q 001336 856 HPQDNNIIAIGMEDSSIQIYNVRVD---------EVKTKLKGHQKRITGLAFSNTLN---VLVSSGADSQLCVWSTDG 921 (1097)
Q Consensus 856 sp~~~~~la~g~~dg~v~vwd~~~~---------~~~~~l~~h~~~V~~l~~s~dg~---~l~s~~~Dg~i~iwd~~~ 921 (1097)
. ++++|++++.||.|++|++.+. .....+.+|.+.|.+++|+|+++ .|++++.+|.+.+|+++.
T Consensus 344 ~--~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 344 A--AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp E--TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred C--CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 5 5789999999999999998763 22234567889999999999999 788888899999999864
No 52
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.6e-34 Score=325.94 Aligned_cols=249 Identities=19% Similarity=0.306 Sum_probs=210.2
Q ss_pred CCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeeccc------------------CcEEEEEEecCCCc
Q 001336 379 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHV------------------GSVNDLAFSYPNKQ 440 (1097)
Q Consensus 379 ~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~------------------~~V~~l~~s~d~~~ 440 (1097)
+|...|.+++|||||++||+|+ ++.++||++.+++.+.. +.+|. ..|.+++|+|+++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVAR---LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEE---ECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEE---ecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999986 67899999999886553 33332 3499999999999
Q ss_pred EEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEE
Q 001336 441 LSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM 520 (1097)
Q Consensus 441 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 520 (1097)
+|++|+.|+.|++||+.+++.+..+.+|...|.+++|+ +++.+|++++.|++|++||+++++....+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~--p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF--PSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEc--CCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 89999999999999999999999999999999999995 566899999999999999999877666654 34579999
Q ss_pred EEcc-CCCEEEEeeeCCCCCceEEEEeCCCCeeeEEe-------cCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001336 521 AYSA-DGARLFSCGTNKEGESYLVEWNESEGAVKRTY-------HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 592 (1097)
Q Consensus 521 ~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 592 (1097)
+|+| +++++++++.++ .|++||++++..+..+ .+|.. .|.+++|+|++++|++++.|+.|++||+.+
T Consensus 213 ~~~~~~~~~l~~~s~d~----~v~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 213 AVSPGDGKYIAAGSLDR----AVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp EECSTTCCEEEEEETTS----CEEEEETTTCCEEEEEC------CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEECCCCCEEEEEcCCC----cEEEEECCCCcEEEeecccccCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9999 899999998654 6999999999887776 45655 899999999999999999999999999976
Q ss_pred Cc------------eEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEe
Q 001336 593 VN------------LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTV 644 (1097)
Q Consensus 593 ~~------------~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 644 (1097)
.. +...+.+| ...|.+++|+|++.+|++|+.|+.|++||..++ ..+..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-~~~~~l 348 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLML 348 (393)
T ss_dssp -------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEE
T ss_pred CCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-eEEEEE
Confidence 42 34445544 678999999999999999999999999999887 334333
No 53
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.6e-34 Score=353.03 Aligned_cols=298 Identities=20% Similarity=0.286 Sum_probs=251.0
Q ss_pred EEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEc
Q 001336 312 VVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 390 (1097)
Q Consensus 312 ~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 390 (1097)
....+. |.+.|++|+|+|++..+|++|+.||+|+|||+.+........ ...+.+|...|.+++|+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~--------------~~~~~~h~~~v~~v~~s 439 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVA--------------QRRLTGHSHFVEDVVLS 439 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEE--------------EEEEECCSSCEEEEEEC
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccc--------------cceecCCCCcEEEEEEC
Confidence 334455 999999999999987788999999999999998654321110 11267899999999999
Q ss_pred cCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEe---e
Q 001336 391 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF---E 467 (1097)
Q Consensus 391 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~ 467 (1097)
|++++|++|+.||+|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||+......... .
T Consensus 440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 514 (694)
T 3dm0_A 440 SDGQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGE 514 (694)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTT
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCC
Confidence 999999999999999999999987665 4789999999999999999 7999999999999997655433322 4
Q ss_pred cCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeC
Q 001336 468 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 547 (1097)
Q Consensus 468 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 547 (1097)
+|...|.+++|+++.....+++++.|++|++||++.......+..|...|.+++|+|++++|++++.|+ .|++||+
T Consensus 515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg----~i~iwd~ 590 (694)
T 3dm0_A 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDG----VVLLWDL 590 (694)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS----BCEEEET
T ss_pred CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC----eEEEEEC
Confidence 689999999997766557899999999999999999888888888999999999999999999998654 6999999
Q ss_pred CCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC-----------------CCCCcce
Q 001336 548 SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG-----------------GLQASPC 610 (1097)
Q Consensus 548 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------~~~~v~~ 610 (1097)
.+++.+..+..+. .+.+++|+|++.++++++ ++.|++||+.+++.+..+..+. +...+++
T Consensus 591 ~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (694)
T 3dm0_A 591 AEGKKLYSLEANS--VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTS 667 (694)
T ss_dssp TTTEEEECCBCSS--CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEE
T ss_pred CCCceEEEecCCC--cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeee
Confidence 9999888776543 799999999998777766 4569999999999888775321 1123678
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcC
Q 001336 611 IRFNKEGILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 611 v~~s~~~~~l~s~~~dg~i~iw~~~ 635 (1097)
++|+|+|++|++|+.||.|++|++.
T Consensus 668 l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 668 LNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEcCCCCEEEEEcCCCeEEEEecc
Confidence 9999999999999999999999975
No 54
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.5e-34 Score=325.73 Aligned_cols=296 Identities=13% Similarity=0.161 Sum_probs=245.0
Q ss_pred ceEEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEE
Q 001336 310 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 388 (1097)
Q Consensus 310 ~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 388 (1097)
......+. |...|++++|+|++..+|++|+.||.|+|||+.+++..... ...+|...|.+++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~~ 125 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGMK 125 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEEE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEEE
Confidence 34445555 89999999999999446799999999999999988765431 1347999999999
Q ss_pred Ecc-CCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEee
Q 001336 389 WSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE 467 (1097)
Q Consensus 389 ~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 467 (1097)
|+| ++++|++++.|+.|++||+.+. .+.......+|...|.+++|+|+++ +|++|+.|+.|++||+ +++.+..+.
T Consensus 126 ~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~~ 201 (383)
T 3ei3_B 126 FNQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKEK 201 (383)
T ss_dssp EETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred eCCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEec
Confidence 999 7899999999999999999964 3444333445668899999999999 8999999999999998 688899999
Q ss_pred cCCcCeEEEeecccCCcc-EEEEEcCCCeEEEEEcCC----CCceeeecCCCCceEEEEEcc-CCCEEEEeeeCCCCCce
Q 001336 468 GHESPVYSICPHHKENIQ-FIFSTATDGKIKAWLYDN----LGSRVDYDAPGHSSTMMAYSA-DGARLFSCGTNKEGESY 541 (1097)
Q Consensus 468 ~h~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~ 541 (1097)
+|...|.+++|++ ++. ++++++.|+.|++||+++ ......+ .+...|.+++|+| ++++|++++.+ +.
T Consensus 202 ~h~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d----~~ 274 (383)
T 3ei3_B 202 LHKAKVTHAEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQR----NE 274 (383)
T ss_dssp CSSSCEEEEEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESS----SE
T ss_pred cCCCcEEEEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCC----Cc
Confidence 9999999999954 446 899999999999999997 3333334 5778999999999 99999999864 47
Q ss_pred EEEEeCCCCeeeEEecCCCC----------------cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCC
Q 001336 542 LVEWNESEGAVKRTYHGLGK----------------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGL 605 (1097)
Q Consensus 542 i~~wd~~~~~~~~~~~~~~~----------------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 605 (1097)
|++||+.+++....+.+|.. ..+..++|+|++.+ +++.|+.|++||+.+++.+..+..+.+.
T Consensus 275 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~ 352 (383)
T 3ei3_B 275 IRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAA 352 (383)
T ss_dssp EEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBC
T ss_pred EEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCC
Confidence 99999999887776665431 23444666677666 6779999999999999999999876656
Q ss_pred CCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001336 606 QASPCIRFNKEGILLAVSTNDNGIKILANAD 636 (1097)
Q Consensus 606 ~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~ 636 (1097)
..+.+++|+|++.+|++++ ||.|++|++++
T Consensus 353 ~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 353 GIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp SCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 7788889999999999997 89999999864
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.5e-33 Score=330.47 Aligned_cols=341 Identities=18% Similarity=0.288 Sum_probs=269.2
Q ss_pred cCCCCCCe-EEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001336 377 SSDYTASV-NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 455 (1097)
Q Consensus 377 ~~~h~~~V-~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 455 (1097)
+.+|...| .++.| ++++|++|+.||+|++||+.+++.+. .+.+|.+.|++++|++++ ++++|+.|++|++|
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVW 188 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEEE
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEEE
Confidence 67898885 66555 67899999999999999999988665 578999999999999887 59999999999999
Q ss_pred ECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeC
Q 001336 456 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 535 (1097)
Q Consensus 456 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 535 (1097)
|+.+++++..+.+|...|.+++|.+.+++.++++++.|+.|++||+++............ ...+.+.|+
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~---------- 257 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPE---------- 257 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-SSEEESCGG----------
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-cceEeeccC----------
Confidence 999999999999999999999998878889999999999999999987554433221111 111111111
Q ss_pred CCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcC
Q 001336 536 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 615 (1097)
Q Consensus 536 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 615 (1097)
.....+..+.+|.. .+.++ +++++++++++.||.|++||+.+++.+..+..| ...|.+++|+|
T Consensus 258 ------------~~~~~~~~~~~~~~-~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~ 320 (464)
T 3v7d_B 258 ------------ENPYFVGVLRGHMA-SVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH--TDRIYSTIYDH 320 (464)
T ss_dssp ------------GCTTEEEEECCCSS-CEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEET
T ss_pred ------------CCeEEEEEccCccc-eEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CCCEEEEEEcC
Confidence 11223445666655 56555 678899999999999999999999999998765 67899999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCC
Q 001336 616 EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND 695 (1097)
Q Consensus 616 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1097)
++.++++++.||.|++||+.++ +.+..+.
T Consensus 321 ~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~-------------------------------------------------- 349 (464)
T 3v7d_B 321 ERKRCISASMDTTIRIWDLENG-ELMYTLQ-------------------------------------------------- 349 (464)
T ss_dssp TTTEEEEEETTSCEEEEETTTT-EEEEEEC--------------------------------------------------
T ss_pred CCCEEEEEeCCCcEEEEECCCC-cEEEEEe--------------------------------------------------
Confidence 9999999999999999998776 2222111
Q ss_pred CCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCc
Q 001336 696 SRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNS 775 (1097)
Q Consensus 696 ~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~ 775 (1097)
T Consensus 350 -------------------------------------------------------------------------------- 349 (464)
T 3v7d_B 350 -------------------------------------------------------------------------------- 349 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEE
Q 001336 776 TGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLA 854 (1097)
Q Consensus 776 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 854 (1097)
+|...|.+++|+ +++|++++ ||+|++||+.++....... +...+..++
T Consensus 350 ----------------------------~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~ 398 (464)
T 3v7d_B 350 ----------------------------GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITT 398 (464)
T ss_dssp ----------------------------CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEE
T ss_pred ----------------------------CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEE
Confidence 156667777776 46777777 7888888888877666654 667788899
Q ss_pred EeCCCCCEEEEEECCCcEEEEEcccceEEEE-ecccccCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001336 855 FHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK-LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 918 (1097)
Q Consensus 855 ~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd 918 (1097)
|++ +++++++|+ ||.|++||+.+++.+.. +..|.+.|++++|+ +..++++++.||.+.+|-
T Consensus 399 ~~~-~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 399 FYV-SDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEE-CSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred EEe-CCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 999 899999998 89999999999999886 67899999999998 445566666777665554
No 56
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5e-33 Score=311.34 Aligned_cols=228 Identities=16% Similarity=0.245 Sum_probs=183.4
Q ss_pred EECCCE--EEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-----eeEEeecCCc
Q 001336 399 AYSKHI--VHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-----KQYIFEGHES 471 (1097)
Q Consensus 399 ~~~dg~--i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~-----~~~~~~~h~~ 471 (1097)
|...|+ +.++...+.+ +....+|.||.+.|++|+|+|++.. +|+||+.|++|++||+.+++ +...+.+|..
T Consensus 10 g~d~g~~~~~~~~~~~~~-~~l~~tL~GH~~~V~~v~~sp~~~~-~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~ 87 (340)
T 4aow_A 10 GVDLGTENLYFQSMMTEQ-MTLRGTLKGHNGWVTQIATTPQFPD-MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH 87 (340)
T ss_dssp ----------------CE-EEEEEEECCCSSCEEEEEECTTCTT-EEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSS
T ss_pred ccCCCCccEEEEEccCCc-eEEEEEECCccCCEEEEEEeCCCCC-EEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCC
Confidence 434443 4444444433 3344479999999999999998533 89999999999999987654 5678899999
Q ss_pred CeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCe
Q 001336 472 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 551 (1097)
Q Consensus 472 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 551 (1097)
.|.+++| .+++.+|++++.|+.|++|+............+...+....++++++++++++.++ .+++||.....
T Consensus 88 ~V~~~~~--s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~----~~~~~d~~~~~ 161 (340)
T 4aow_A 88 FVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK----TIKLWNTLGVC 161 (340)
T ss_dssp CEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS----CEEEECTTSCE
T ss_pred CEEEEEE--CCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCC----eEEEEEeCCCc
Confidence 9999999 55678999999999999999998888888888888899999999999999998654 69999998765
Q ss_pred eeEE-ecCCCCcceEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCc
Q 001336 552 VKRT-YHGLGKRSVGVVQFDTTK--NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNG 628 (1097)
Q Consensus 552 ~~~~-~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~ 628 (1097)
.... ..+|.. .+..++|++++ ..+++++.|+.|++||+.+++.+..+..| ...|++++|+|++++|++++.||.
T Consensus 162 ~~~~~~~~~~~-~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~Dg~ 238 (340)
T 4aow_A 162 KYTVQDESHSE-WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH--TGYLNTVTVSPDGSLCASGGKDGQ 238 (340)
T ss_dssp EEEECSSSCSS-CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTCE
T ss_pred eEEEEeccccC-cccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCC--CCcEEEEEECCCCCEEEEEeCCCe
Confidence 5444 445554 89999998765 57889999999999999999999988865 678999999999999999999999
Q ss_pred EEEEEcCCC
Q 001336 629 IKILANADG 637 (1097)
Q Consensus 629 i~iw~~~~~ 637 (1097)
|++||+.+.
T Consensus 239 i~iwd~~~~ 247 (340)
T 4aow_A 239 AMLWDLNEG 247 (340)
T ss_dssp EEEEETTTT
T ss_pred EEEEEeccC
Confidence 999998765
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.8e-33 Score=327.07 Aligned_cols=346 Identities=15% Similarity=0.221 Sum_probs=272.8
Q ss_pred eeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001336 551 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK 630 (1097)
Q Consensus 551 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~ 630 (1097)
.....+.+|....+.++.+ +++++++|+.||.|++||+.+++.+..+.+| ...|.+++|++++ ++++|+.||+|+
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h--~~~V~~l~~~~~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGH--DGGVWALKYAHGG-ILVSGSTDRTVR 186 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECSTT-EEEEEETTSCEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCC--CcCEEEEEEcCCC-EEEEEeCCCCEE
Confidence 3456788888755666666 5679999999999999999999999999865 7799999999987 999999999999
Q ss_pred EEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCccccccc
Q 001336 631 ILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEA 710 (1097)
Q Consensus 631 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1097)
+||+.++ .....+.
T Consensus 187 vwd~~~~-~~~~~~~----------------------------------------------------------------- 200 (464)
T 3v7d_B 187 VWDIKKG-CCTHVFE----------------------------------------------------------------- 200 (464)
T ss_dssp EEETTTT-EEEEEEC-----------------------------------------------------------------
T ss_pred EEECCCC-cEEEEEC-----------------------------------------------------------------
Confidence 9999887 3333332
Q ss_pred ccccccccccccCCCceeeEeccCCCcCccceEEEEEc--cCCceeeeeccCcEEEEeccCCCCCCccCccccccCCccc
Q 001336 711 VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYT--NSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLW 788 (1097)
Q Consensus 711 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s--pdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w 788 (1097)
+|...|.+++|+ +++..+++++.||.|++|++...................+
T Consensus 201 --------------------------~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 201 --------------------------GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp --------------------------CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred --------------------------CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence 266778888888 5889999999999999999886532211111000000011
Q ss_pred CCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEE
Q 001336 789 QPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM 867 (1097)
Q Consensus 789 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~ 867 (1097)
...........+.+ |...|.++ +++++++++++ |+.|++||+.+++++..+.+|...|.+++|+| +++++++|+
T Consensus 255 ~~~~~~~~~~~~~~--~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~ 329 (464)
T 3v7d_B 255 TPEENPYFVGVLRG--HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISAS 329 (464)
T ss_dssp CGGGCTTEEEEECC--CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEE
T ss_pred ccCCCeEEEEEccC--ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEe
Confidence 11111111222333 77788776 68899999999 99999999999999999999999999999999 899999999
Q ss_pred CCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEE
Q 001336 868 EDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQ 947 (1097)
Q Consensus 868 ~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 947 (1097)
.||.|++||+.+++++..+.+|...|.+++|+ +.+|++++.||.|++||+.+++. ....... ..+..++
T Consensus 330 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~----~~~~~~~-----~~~~~~~ 398 (464)
T 3v7d_B 330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR----KFSYHHT-----NLSAITT 398 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE----EEEEECT-----TCCCEEE
T ss_pred CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCce----eeeecCC-----CCccEEE
Confidence 99999999999999999999999999999997 68999999999999999998552 2222211 3478899
Q ss_pred EcCCCcEEEEEeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEe
Q 001336 948 FHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLT 1011 (1097)
Q Consensus 948 ~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd 1011 (1097)
|++++.+|+++.|+.|++||+.+++.+..+.. +|...|.+++|+ ++.++++++.||.+.+|-
T Consensus 399 ~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~-~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 399 FYVSDNILVSGSENQFNIYNLRSGKLVHANIL-KDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEECSSEEEEEETTEEEEEETTTCCEEESCTT-TTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred EEeCCCEEEEecCCeEEEEECCCCcEEehhhc-cCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 99999999998899999999999998876442 678999999997 445566667777666554
No 58
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=347.25 Aligned_cols=268 Identities=9% Similarity=0.046 Sum_probs=200.9
Q ss_pred ccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccC------CCEEEEEEC
Q 001336 328 HPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD------GTLFGVAYS 401 (1097)
Q Consensus 328 spdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd------~~~las~~~ 401 (1097)
+|+++ ++++|+.|++|+|||+.+++....... .+.+|.+.|.+++|+|+ +.+||+|+.
T Consensus 170 ~~~~~-~laS~s~D~tI~iWd~~~~~~~~~~~~---------------~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~ 233 (524)
T 2j04_B 170 NEHLE-MFDKEKHSSCIQIFKMNTSTLHCVKVQ---------------TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQ 233 (524)
T ss_dssp -------------CEEEEEEEEETTTCCEEEEE---------------EEEECCCSEEEEEECSSCCCSSSSCEEEEEET
T ss_pred chhhh-hhccCCCCceEEEEEccCCCCCceEEE---------------EEEecCCcEEEEEECCCCCCCCCCceEEEEec
Confidence 44444 235677899999999988764321100 14567889999999997 579999999
Q ss_pred CCEEEEEEccCCeee--------eeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCc-eeEEeecCCcC
Q 001336 402 KHIVHLYTYHGGDEL--------RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIFEGHESP 472 (1097)
Q Consensus 402 dg~i~iwd~~~~~~~--------~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~~ 472 (1097)
||+|+|||+.+++.. .....+.+|...|++++|++++ .|++|+.||+|++||+.++. +...+.+|...
T Consensus 234 DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~ 310 (524)
T 2j04_B 234 EGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSY 310 (524)
T ss_dssp TSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSC
T ss_pred CCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeeccccc
Confidence 999999999876421 1123578899999999999864 69999999999999999774 45678999999
Q ss_pred eEEEeecccCCc-cEEEEEcCCCeEEEEEcCCCCceeeecCCC--CceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCC
Q 001336 473 VYSICPHHKENI-QFIFSTATDGKIKAWLYDNLGSRVDYDAPG--HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 549 (1097)
Q Consensus 473 v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 549 (1097)
|.++++.+.+++ .+|++++.|++|++||+++.+....+..+. ..|.+++|+|+++.+++++. +..|++||+++
T Consensus 311 V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~----d~tv~lwd~~~ 386 (524)
T 2j04_B 311 ILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG----ASSLRAVPSRA 386 (524)
T ss_dssp EEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECS----SSEEEEEETTC
T ss_pred EEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCC----CCcEEEEECcc
Confidence 999954335666 799999999999999998776655554443 35789999999999998875 34799999999
Q ss_pred CeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC---CCCCCcceEEEcCCCCEE
Q 001336 550 GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD---GGLQASPCIRFNKEGILL 620 (1097)
Q Consensus 550 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~v~~s~~~~~l 620 (1097)
+.++..+.+|.. .|.+++|+|+++.|++|+.||+|++||+..+ .+...... .....+.+++|+|++..+
T Consensus 387 ~~~~~~l~gH~~-~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 387 AFAVHPLVSRET-TITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp TTCCEEEEECSS-CEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEE
T ss_pred cccceeeecCCC-ceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeE
Confidence 998888888877 9999999999999999999999999998654 22211100 011235688889888743
No 59
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6e-33 Score=323.20 Aligned_cols=320 Identities=16% Similarity=0.268 Sum_probs=274.0
Q ss_pred cCCCe-eEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEE
Q 001336 318 QGSAV-KSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 396 (1097)
Q Consensus 318 h~~~V-~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 396 (1097)
|.+.| ++ ++++|+ ++++|+.||.|+|||+.+++.+.. +.+|...|.+++|+ +++|
T Consensus 117 h~~~v~~~--~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~--~~~l 172 (445)
T 2ovr_B 117 HDDHVITC--LQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR--DNII 172 (445)
T ss_dssp STTSCEEE--EEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE--TTEE
T ss_pred cCCCcEEE--EEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec--CCEE
Confidence 76654 55 445677 468999999999999999987653 67899999999997 6799
Q ss_pred EEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEE
Q 001336 397 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 476 (1097)
Q Consensus 397 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 476 (1097)
++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|+.|++||+.+++.+..+.+|...|.++
T Consensus 173 ~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 245 (445)
T 2ovr_B 173 ISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245 (445)
T ss_dssp EEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred EEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEE
Confidence 999999999999999987665 578999999999996 45 79999999999999999999999999999999999
Q ss_pred eecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEe
Q 001336 477 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY 556 (1097)
Q Consensus 477 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 556 (1097)
++ ++.++++++.||.|++||+++......+..+...|.++.| ++.++++++.++ .|++||+++++.+..+
T Consensus 246 ~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~----~i~i~d~~~~~~~~~~ 315 (445)
T 2ovr_B 246 QY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT----SIRVWDVETGNCIHTL 315 (445)
T ss_dssp EE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTS----CEEEEETTTCCEEEEE
T ss_pred EE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCC----eEEEEECCCCCEEEEE
Confidence 87 4478999999999999999998888888888889999999 889999998654 6999999999999999
Q ss_pred cCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-CCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001336 557 HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-GGLQASPCIRFNKEGILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 557 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~ 635 (1097)
.+|.. .+.++.+ +++++++++.||.|++||+.+++.+..+..+ .+...|.+++|+ +.+|++++.||.|++||+.
T Consensus 316 ~~~~~-~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 316 TGHQS-LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp CCCCS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred cCCcc-cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECC
Confidence 98876 7777766 4679999999999999999999999998753 246789999996 5799999999999999999
Q ss_pred CCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccc
Q 001336 636 DGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSR 715 (1097)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 715 (1097)
++ +.+..+...
T Consensus 391 ~~-~~~~~~~~~-------------------------------------------------------------------- 401 (445)
T 2ovr_B 391 TG-EFIRNLVTL-------------------------------------------------------------------- 401 (445)
T ss_dssp TC-CEEEEEEEC--------------------------------------------------------------------
T ss_pred CC-ceeeeeecc--------------------------------------------------------------------
Confidence 88 343333110
Q ss_pred cccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcE----EEEeccCC
Q 001336 716 IWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAV----HKLWKWPR 770 (1097)
Q Consensus 716 ~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~----i~vw~~~~ 770 (1097)
....+...|.+++|+|++..+++++.||. +.+||+..
T Consensus 402 ------------------~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 402 ------------------ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp ------------------TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ------------------ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 00126678999999999999999999997 99998763
No 60
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-35 Score=343.41 Aligned_cols=350 Identities=7% Similarity=0.012 Sum_probs=248.3
Q ss_pred CCCCeEEEEEccCC---------CEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCC
Q 001336 380 YTASVNRVMWSPDG---------TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR 450 (1097)
Q Consensus 380 h~~~V~~v~~spd~---------~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~ 450 (1097)
+.+.|.+|+|+|++ ++||+|+.++.. -..+|+++ ++++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 56799999999987 799999876420 01368888 799999999
Q ss_pred cEEEEECCCCcee----EEeecCCcCeEEEeeccc----CCccEEEEEcCCCeEEEEEcCCCCce-----------eeec
Q 001336 451 VIKVWDAVTGTKQ----YIFEGHESPVYSICPHHK----ENIQFIFSTATDGKIKAWLYDNLGSR-----------VDYD 511 (1097)
Q Consensus 451 ~i~iwd~~~~~~~----~~~~~h~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~ 511 (1097)
+|+|||+.++++. .++.+|.+.|.+++|++. +++.+|++++.||+|++||+...... ..+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887653 456778899999999876 34679999999999999999765421 2456
Q ss_pred CCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCe-eeEEecCCCCcceEEE--EEcCCC-CEEEEEeCCCcEEE
Q 001336 512 APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA-VKRTYHGLGKRSVGVV--QFDTTK-NRFLAAGDEFMIKF 587 (1097)
Q Consensus 512 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~i 587 (1097)
.+...|.+++|++++ .|++++.| +.|++||++++. +...+.+|.. .|.++ +|++++ .+|++++.|++|++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~D----gtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFKN----GFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEETT----SEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeCC----CEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 677899999999864 78888764 479999999774 4556788876 89998 578887 89999999999999
Q ss_pred EECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccc
Q 001336 588 WDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGT 667 (1097)
Q Consensus 588 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1097)
||+++++.+..+..+.....|.+++|+|++..+++++.|++|++||+.++. ....+.
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~-~~~~l~---------------------- 394 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF-AVHPLV---------------------- 394 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT-CCEEEE----------------------
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc-cceeee----------------------
Confidence 999998877777655333358899999999999999999999999987762 111111
Q ss_pred cccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEE
Q 001336 668 FGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIY 747 (1097)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 747 (1097)
+|...|.+++|
T Consensus 395 ---------------------------------------------------------------------gH~~~V~sva~ 405 (524)
T 2j04_B 395 ---------------------------------------------------------------------SRETTITAIGV 405 (524)
T ss_dssp ---------------------------------------------------------------------ECSSCEEEEEC
T ss_pred ---------------------------------------------------------------------cCCCceEEEEe
Confidence 27788999999
Q ss_pred ccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEeCC
Q 001336 748 TNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGG 827 (1097)
Q Consensus 748 spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sdg 827 (1097)
+|+|+.|++++.||+|++|++.... +....+ .....+...+..++|+|+|+.+.. ++
T Consensus 406 Sp~g~~l~Sgs~Dgtv~lwd~~~~~---------------~~~~~~------~~~~~~~~~v~~v~~sp~g~~~~~--~~ 462 (524)
T 2j04_B 406 SRLHPMVLAGSADGSLIITNAARRL---------------LHGIKN------SSATQKSLRLWKWDYSIKDDKYRI--DS 462 (524)
T ss_dssp CSSCCBCEEEETTTEEECCBSCSST---------------TTCC------------CCCCEEEECBCCSSSCEEEE--CC
T ss_pred CCCCCeEEEEECCCEEEEEechHhh---------------cccccc------CccceeeeEEEEeccCCCCCeEEc--cC
Confidence 9999999999999999999864310 000000 000002235789999999986532 22
Q ss_pred eEEEEEcC-CCceeEEeCCCCCCeEEEEEeCCCC---CEEEEEECCCcEEEEEccc
Q 001336 828 KISLFNMM-TFKTMTTFMPPPPAATFLAFHPQDN---NIIAIGMEDSSIQIYNVRV 879 (1097)
Q Consensus 828 ~i~iwd~~-~~~~~~~~~~~~~~i~~l~~sp~~~---~~la~g~~dg~v~vwd~~~ 879 (1097)
.+.+|+.. ++.++.++.+|...|.+|+|+| ++ .++|+|+.||.|+||++..
T Consensus 463 ~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 463 SYEVYPLTVNDVSKAKIDAHGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCCCC-------------CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred CceecccccCCcceeeecCCCceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 33444443 5678888999999999999999 64 5999999999999999864
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=9.4e-33 Score=321.53 Aligned_cols=316 Identities=21% Similarity=0.346 Sum_probs=270.3
Q ss_pred eeecccCcE-EEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEE
Q 001336 421 EIEAHVGSV-NDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 499 (1097)
Q Consensus 421 ~l~~h~~~V-~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 499 (1097)
.+.+|.+.| .++ +++++ +|++|+.||.|++||+.+++++..+.+|...|.+++|+ +.++++++.||+|++|
T Consensus 113 ~l~~h~~~v~~~~--~~~g~--~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 113 VLKGHDDHVITCL--QFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR----DNIIISGSTDRTLKVW 184 (445)
T ss_dssp EEECSTTSCEEEE--EEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE----TTEEEEEETTSCEEEE
T ss_pred EecccCCCcEEEE--EEcCC--EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec----CCEEEEEeCCCeEEEE
Confidence 477898875 554 45677 89999999999999999999999999999999999984 3689999999999999
Q ss_pred EcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEE
Q 001336 500 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAA 579 (1097)
Q Consensus 500 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 579 (1097)
|+.+++....+..+...|.++.|+ ++.+++++.+ +.|++||+.+++.+..+.+|.. .+.++.+ ++++++++
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~d----g~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~ 255 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRD----ATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSG 255 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETT----SEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEE
T ss_pred ECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCC----CEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEE
Confidence 999988888888888899999885 5678888764 4799999999999999988876 8888888 67899999
Q ss_pred eCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEeccccccccccccccc
Q 001336 580 GDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAI 659 (1097)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1097)
+.||.|++||+.+++.+..+..| ...|.+++| ++.++++++.||.|++||+.++ +....+.
T Consensus 256 ~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~-------------- 316 (445)
T 2ovr_B 256 AYDFMVKVWDPETETCLHTLQGH--TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCIHTLT-------------- 316 (445)
T ss_dssp ETTSCEEEEEGGGTEEEEEECCC--SSCEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEEEEEC--------------
T ss_pred cCCCEEEEEECCCCcEeEEecCC--CCceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEEEEEc--------------
Confidence 99999999999999998888755 668888888 6889999999999999998765 1111110
Q ss_pred ccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCc
Q 001336 660 VKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTA 739 (1097)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 739 (1097)
T Consensus 317 -------------------------------------------------------------------------------- 316 (445)
T 2ovr_B 317 -------------------------------------------------------------------------------- 316 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCC
Q 001336 740 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS 819 (1097)
Q Consensus 740 ~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 819 (1097)
+|...+.++.+ +++
T Consensus 317 ----------------------------------------------------------------~~~~~v~~~~~--~~~ 330 (445)
T 2ovr_B 317 ----------------------------------------------------------------GHQSLTSGMEL--KDN 330 (445)
T ss_dssp ----------------------------------------------------------------CCCSCEEEEEE--ETT
T ss_pred ----------------------------------------------------------------CCcccEEEEEE--eCC
Confidence 14455666655 466
Q ss_pred EEEEEe-CCeEEEEEcCCCceeEEeCC---CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEe-----cccc
Q 001336 820 YVMSAS-GGKISLFNMMTFKTMTTFMP---PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL-----KGHQ 890 (1097)
Q Consensus 820 ~la~~s-dg~i~iwd~~~~~~~~~~~~---~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l-----~~h~ 890 (1097)
++++++ ||.|++||+.+++++..+.. |...|.+++|++ ++|++|+.||.|++||+.+++.+..+ .+|.
T Consensus 331 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 407 (445)
T 2ovr_B 331 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 407 (445)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCC
Confidence 888888 89999999999999999886 778899999964 79999999999999999999988887 5788
Q ss_pred cCeEEEEEecCCCEEEEEeCCCc----EEEEEcCC
Q 001336 891 KRITGLAFSNTLNVLVSSGADSQ----LCVWSTDG 921 (1097)
Q Consensus 891 ~~V~~l~~s~dg~~l~s~~~Dg~----i~iwd~~~ 921 (1097)
+.|++++|+|++.++++++.||+ |.+||++.
T Consensus 408 ~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 408 GVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 99999999999999999999998 99999976
No 62
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-33 Score=313.94 Aligned_cols=286 Identities=12% Similarity=0.118 Sum_probs=253.2
Q ss_pred eecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCE
Q 001336 316 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 395 (1097)
Q Consensus 316 ~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 395 (1097)
..|...|++++|+|+|++ |++|+.||.|+|||+.+++.+.. +.+|...|.+++|+|++++
T Consensus 29 ~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~ 88 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDL-LFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVDCFTKY 88 (369)
T ss_dssp ECCSSCEEEEEECTTSCE-EEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTSSE
T ss_pred EEeeceEEEEEEcCCCCE-EEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEcCCCCE
Confidence 349999999999999995 58999999999999999887653 6789999999999999999
Q ss_pred EEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCC-----CcEEEEECCCCc---------
Q 001336 396 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RVIKVWDAVTGT--------- 461 (1097)
Q Consensus 396 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d-----~~i~iwd~~~~~--------- 461 (1097)
|++++.||.|++||+.+++.+.. +. |...|.+++|+|+++ ++++++.+ +.|++||+.++.
T Consensus 89 l~s~~~dg~i~iwd~~~~~~~~~---~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~ 162 (369)
T 3zwl_B 89 CVTGSADYSIKLWDVSNGQCVAT---WK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELTKVS 162 (369)
T ss_dssp EEEEETTTEEEEEETTTCCEEEE---EE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC
T ss_pred EEEEeCCCeEEEEECCCCcEEEE---ee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeecccc
Confidence 99999999999999999886653 33 888999999999999 89999998 999999998664
Q ss_pred --eeEEeecCCc--CeEEEeecccCCccEEEEEcCCCeEEEEEcCC-CCceeeecCCCCceEEEEEccCCCEEEEeeeCC
Q 001336 462 --KQYIFEGHES--PVYSICPHHKENIQFIFSTATDGKIKAWLYDN-LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 536 (1097)
Q Consensus 462 --~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 536 (1097)
.+..+..|.. .+.+++|++ ++.+|++++.||.|++||+++ ......+..+...|.+++|+|++++|++++.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d- 239 (369)
T 3zwl_B 163 EEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD- 239 (369)
T ss_dssp SSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT-
T ss_pred cceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCC-
Confidence 3455566766 899999954 568999999999999999998 56667777888899999999999999999764
Q ss_pred CCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCC--------------cEEEEECCCCceEEEEecC
Q 001336 537 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF--------------MIKFWDMDNVNLLASIDAD 602 (1097)
Q Consensus 537 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~ 602 (1097)
+.|++||+.+++.+..+... ..+..++|+|++.++++++.++ .+++||..+++.+..+..|
T Consensus 240 ---~~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 314 (369)
T 3zwl_B 240 ---TNSFLVDVSTLQVLKKYETD--CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH 314 (369)
T ss_dssp ---SEEEEEETTTCCEEEEEECS--SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC
T ss_pred ---ceEEEEECCCCceeeeecCC--CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc
Confidence 47999999999998888733 3799999999999999999888 8999999999999999866
Q ss_pred CCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 603 GGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 603 ~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
...|.+++|+|++++|++++.||.|++|++..+
T Consensus 315 --~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 315 --FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp --SSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred --cCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 678999999999999999999999999999875
No 63
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.8e-33 Score=322.67 Aligned_cols=299 Identities=13% Similarity=0.136 Sum_probs=252.1
Q ss_pred EEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc
Q 001336 313 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 391 (1097)
Q Consensus 313 ~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 391 (1097)
...+. |...|++++|+| + +|++|+.||.|+|||+.+++...... ....+.+|...|.+++|+|
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~~~ 72 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKD-------------KSYSHFVHKSGLHHVDVLQ 72 (397)
T ss_dssp EEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGG-------------GEEEEECCTTCEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCC-------------cceEEecCCCcEEEEEEec
Confidence 34444 999999999999 4 67999999999999999887111000 0012568999999999999
Q ss_pred C----C---CEEEEEECCCEEEEEEccCCee-----eeeeeeeecc-----cCcEEEEEEe----cCCCcEE-EEEEeCC
Q 001336 392 D----G---TLFGVAYSKHIVHLYTYHGGDE-----LRNHLEIEAH-----VGSVNDLAFS----YPNKQLS-VVTCGED 449 (1097)
Q Consensus 392 d----~---~~las~~~dg~i~iwd~~~~~~-----~~~~~~l~~h-----~~~V~~l~~s----~d~~~~~-l~s~s~d 449 (1097)
+ + ++|++++.||.|++||+.+++. +. .+.+| ...|.+++|+ |+++ + |++++.|
T Consensus 73 ~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~d 147 (397)
T 1sq9_A 73 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVK 147 (397)
T ss_dssp EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETT
T ss_pred ccccCCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCC
Confidence 9 9 9999999999999999998774 33 46677 5999999999 9999 8 9999999
Q ss_pred CcEEEEECCC------CceeE-----Eee-------cCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeec
Q 001336 450 RVIKVWDAVT------GTKQY-----IFE-------GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD 511 (1097)
Q Consensus 450 ~~i~iwd~~~------~~~~~-----~~~-------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 511 (1097)
+.|++||+.+ ++.+. .+. .|...|.+++| .+++ ++++++.|+.|++||+++......+.
T Consensus 148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~ 224 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI--SERG-LIATGFNNGTVQISELSTLRPLYNFE 224 (397)
T ss_dssp SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEE--CTTS-EEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEE--CCCc-eEEEEeCCCcEEEEECCCCceeEEEe
Confidence 9999999998 77776 774 48999999999 5566 99999999999999999888888888
Q ss_pred C---C---CCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecC-------------CCCcceEEEEEcCC
Q 001336 512 A---P---GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG-------------LGKRSVGVVQFDTT 572 (1097)
Q Consensus 512 ~---~---~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-------------~~~~~v~~~~~~~~ 572 (1097)
. + ...|.+++|+|++++|++++.++ ..+.|++||+.+++.+..+.+ |.. .+.+++|+|+
T Consensus 225 ~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~ 302 (397)
T 1sq9_A 225 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSN-SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFNDS 302 (397)
T ss_dssp CCC---CCCCCEEEEEECSSTTEEEEEEEET-TEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEEECSS
T ss_pred ccccccccCCccceEEECCCCCEEEEEecCC-CCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEEECCC
Confidence 7 7 88999999999999999998641 015799999999999999988 665 8999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEe------cC-------------CCCCCcceEEEcCCC----------CEEEEE
Q 001336 573 KNRFLAAGDEFMIKFWDMDNVNLLASID------AD-------------GGLQASPCIRFNKEG----------ILLAVS 623 (1097)
Q Consensus 573 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~s~~~----------~~l~s~ 623 (1097)
+++|++++.||.|++||+.+++.+..+. .| .+...|.+++|+|++ .+|+++
T Consensus 303 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~ 382 (397)
T 1sq9_A 303 GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCV 382 (397)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEe
Confidence 9999999999999999999999999988 43 115689999999998 799999
Q ss_pred ECCCcEEEEEcCCC
Q 001336 624 TNDNGIKILANADG 637 (1097)
Q Consensus 624 ~~dg~i~iw~~~~~ 637 (1097)
+.||.|++|++.++
T Consensus 383 ~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 383 CLDRSIRWFREAGG 396 (397)
T ss_dssp ETTTEEEEEEEEC-
T ss_pred cCCCcEEEEEcCCC
Confidence 99999999999876
No 64
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.2e-33 Score=320.02 Aligned_cols=290 Identities=17% Similarity=0.221 Sum_probs=244.5
Q ss_pred cCCCeeEEEEccC---CCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccC--
Q 001336 318 QGSAVKSMDFHPV---QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-- 392 (1097)
Q Consensus 318 h~~~V~~v~fspd---g~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-- 392 (1097)
|...|++++|+|+ +..++++++.++.|+|||+.+++.+...... ....|...|.+++|+|+
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~--------------~~~~~~~~v~~~~~~~~~~ 82 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSY--------------VDADADENFYTCAWTYDSN 82 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEE--------------ECSCTTCCEEEEEEEECTT
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeec--------------cccCCCCcEEEEEeccCCC
Confidence 8999999999985 5556667777789999999988765431110 12347889999999998
Q ss_pred --CCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEec-CCCcEEEEEEeCCCcEEEEECCCCceeEEe---
Q 001336 393 --GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY-PNKQLSVVTCGEDRVIKVWDAVTGTKQYIF--- 466 (1097)
Q Consensus 393 --~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~-d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--- 466 (1097)
+++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++++.|+.|++||+.+++.+..+
T Consensus 83 ~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 83 TSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp TCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred CCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 6799999999999999999987655 4778999999999999 777 8999999999999999999999988
Q ss_pred ecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeec----------------------------CCCCceE
Q 001336 467 EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD----------------------------APGHSST 518 (1097)
Q Consensus 467 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------------------------~~~~~v~ 518 (1097)
.+|...|.+++|++ ++.+|++++.||.|++||+++......+. .+...|.
T Consensus 158 ~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (366)
T 3k26_A 158 EGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD 235 (366)
T ss_dssp TSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred ccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence 78999999999954 66899999999999999998755433222 2777899
Q ss_pred EEEEccCCCEEEEeeeCCCCCceEEEEeCCCCee--------------eEEecCCCCcceEEEEEcCC--CCEEEEEeCC
Q 001336 519 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAV--------------KRTYHGLGKRSVGVVQFDTT--KNRFLAAGDE 582 (1097)
Q Consensus 519 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d 582 (1097)
+++|+ ++++++++. ++.|++||+.++.. +..+.+|.. .+.+++|+|+ +++|++++.|
T Consensus 236 ~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~d 308 (366)
T 3k26_A 236 CVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQV 308 (366)
T ss_dssp EEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECTT
T ss_pred EEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEecC
Confidence 99998 778998875 44799999987643 777788776 7899999999 9999999999
Q ss_pred CcEEEEECCCCce----EEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001336 583 FMIKFWDMDNVNL----LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 583 g~i~iwd~~~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~ 635 (1097)
|.|++||+.+++. ...+..|.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 309 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 309 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999998764 4466666557899999999999999999999999999975
No 65
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.8e-34 Score=331.66 Aligned_cols=293 Identities=17% Similarity=0.232 Sum_probs=235.1
Q ss_pred ecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc-CCCE
Q 001336 317 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTL 395 (1097)
Q Consensus 317 ~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~ 395 (1097)
.|...|+||+|+|.+..+||+|+.||.|+|||+.+++..... .+.+|.+.|++|+|+| ++++
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-----------------~~~gH~~~V~~l~f~p~~~~~ 179 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-----------------KGIGAGGSITGLKFNPLNTNQ 179 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-----------------CCCSSSCCCCEEEECSSCTTE
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-----------------EccCCCCCEEEEEEeCCCCCE
Confidence 478899999999976667899999999999999877643321 1568999999999998 7899
Q ss_pred EEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEE
Q 001336 396 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 475 (1097)
Q Consensus 396 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 475 (1097)
|++|+.||+|+|||++++. .........+...+.+++|+|+++ +|++|+.||.|++||+. ++.+..+.+|...|.+
T Consensus 180 l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~ 255 (435)
T 4e54_B 180 FYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTH 255 (435)
T ss_dssp EEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEE
T ss_pred EEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccceEEe
Confidence 9999999999999998764 333222334555788999999999 89999999999999975 5677889999999999
Q ss_pred EeecccCCccEEEEEcCCCeEEEEEcCCCCceee---ecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCee
Q 001336 476 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD---YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV 552 (1097)
Q Consensus 476 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 552 (1097)
++|++..+ .++++++.|+.|++||+++...... ...|...|.+++|+|+|++|++++.|+ .|++||+.++..
T Consensus 256 v~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~----~i~iwd~~~~~~ 330 (435)
T 4e54_B 256 VALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS----EIRVYSASQWDC 330 (435)
T ss_dssp EEECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS----CEEEEESSSSSS
T ss_pred eeecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCC----EEEEEECCCCcc
Confidence 99966543 5888999999999999987665433 345677999999999999999998754 699999999988
Q ss_pred eEEecCCCCc-----ceEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCceEEEEecCCCCCCcceE-EEc
Q 001336 553 KRTYHGLGKR-----SVGVVQFDTTKNRFLAAG------------DEFMIKFWDMDNVNLLASIDADGGLQASPCI-RFN 614 (1097)
Q Consensus 553 ~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s 614 (1097)
...+..|... .+....|+|++..+++++ .++.|++||..+++.+..+.. ++...|.++ +|+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~-~~~~~v~s~~~fs 409 (435)
T 4e54_B 331 PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD-PESSGISSLNEFN 409 (435)
T ss_dssp EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC-SSCCCCCCEEEEC
T ss_pred ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC-CCCCcEEEEEEEC
Confidence 8777665421 123456777777766664 345799999999999988754 235577777 699
Q ss_pred CCCCEEEEEECCCcEEEEEcCCC
Q 001336 615 KEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 615 ~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
|+|.+|++|+ |+.|+||+++++
T Consensus 410 pdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 410 PMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TTSSCEEEEC-SSEEEECCCC--
T ss_pred CCCCEEEEEc-CCcEEEEECCcC
Confidence 9999999876 779999999887
No 66
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=316.78 Aligned_cols=294 Identities=13% Similarity=0.193 Sum_probs=244.8
Q ss_pred EEEee-cCCCeeEEEEccCCCeEEEEEeC---CCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEE
Q 001336 313 VMTLN-QGSAVKSMDFHPVQQILLVVGTN---MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 388 (1097)
Q Consensus 313 ~~~~~-h~~~V~~v~fspdg~~lla~gs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 388 (1097)
...+. |...|++++|+|++..++++|+. ||.|+|||+.+++..... ..+|...|.+++
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v~~~~ 72 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPIKCGT 72 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCEEEEE
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcEEEEE
Confidence 33434 99999999999999989899987 999999999988765421 236899999999
Q ss_pred EccC---CCEEEEEECCCEEEEEEccCCe-eeeeeeeeecccCcEEEEEE------ecCCCcEEEEEEeCCCcEEEEECC
Q 001336 389 WSPD---GTLFGVAYSKHIVHLYTYHGGD-ELRNHLEIEAHVGSVNDLAF------SYPNKQLSVVTCGEDRVIKVWDAV 458 (1097)
Q Consensus 389 ~spd---~~~las~~~dg~i~iwd~~~~~-~~~~~~~l~~h~~~V~~l~~------s~d~~~~~l~s~s~d~~i~iwd~~ 458 (1097)
|+|+ +++|++|+.||.|++||+.+++ .+. .+.+|...|.+++| +|+++ +|++++.|+.|++||+.
T Consensus 73 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~ 147 (357)
T 3i2n_A 73 FGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPR 147 (357)
T ss_dssp CTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTT
T ss_pred EcCCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCC
Confidence 9998 7999999999999999999886 333 57899999999965 67888 89999999999999999
Q ss_pred CCc-eeEEeecCCc----CeEEEeec--ccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEcc---CCCE
Q 001336 459 TGT-KQYIFEGHES----PVYSICPH--HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA---DGAR 528 (1097)
Q Consensus 459 ~~~-~~~~~~~h~~----~v~~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~---~~~~ 528 (1097)
+++ .+..+..|.+ .|.+++|. ..+++.++++++.||.|++||+++..... ...+...|.+++|+| ++.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~ 226 (357)
T 3i2n_A 148 QKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNK 226 (357)
T ss_dssp SCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCE
T ss_pred CCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCE
Confidence 987 7788876655 78888842 24667899999999999999999876643 345677999999999 9999
Q ss_pred EEEeeeCCCCCceEEEEeCCCCeeeEEec-----CCCCcceEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---------
Q 001336 529 LFSCGTNKEGESYLVEWNESEGAVKRTYH-----GLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNV--------- 593 (1097)
Q Consensus 529 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~--------- 593 (1097)
+++++.+ +.|++||+++++....+. +|.. .+.+++|+|++. +|++++.||.|++||+.++
T Consensus 227 l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 301 (357)
T 3i2n_A 227 LVATSLE----GKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE 301 (357)
T ss_dssp EEEEEST----TEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred EEEECCC----CeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence 9999764 479999999887665554 7766 899999999998 8999999999999999754
Q ss_pred ----------ceEEEEecCCCCCCcceEEEcCCCCEEE-EEECCCcEEEEEcCCC
Q 001336 594 ----------NLLASIDADGGLQASPCIRFNKEGILLA-VSTNDNGIKILANADG 637 (1097)
Q Consensus 594 ----------~~~~~~~~~~~~~~v~~v~~s~~~~~l~-s~~~dg~i~iw~~~~~ 637 (1097)
+.+..+..| ...|.+++|+|++.+|+ +++.||.|++|++.+.
T Consensus 302 g~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 302 GIEMGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp SCCCCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred CCccccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 345556644 77899999999999888 8999999999999765
No 67
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.2e-33 Score=318.69 Aligned_cols=290 Identities=14% Similarity=0.097 Sum_probs=244.9
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCc--eeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE--RIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 395 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 395 (1097)
|...|++++|+|+|++ +++|+.||.|+|||+.+++ .+.. +.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQ-IAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSSE-EEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCCE-EEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCCCCE
Confidence 7889999999999995 5899999999999999886 3332 5689999999999999999
Q ss_pred EEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCce----eEEeecCCc
Q 001336 396 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK----QYIFEGHES 471 (1097)
Q Consensus 396 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~----~~~~~~h~~ 471 (1097)
|++++.||.|++||+.+++... ...+.+|...|.+++|+|+++ +|++++.|+.|++||+..++. .....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 9999999999999999887433 334578999999999999999 899999999999999998873 233467899
Q ss_pred CeEEEeecccCCccEEEEEcCCCeEEEEEcC------------------CCCceeeecCCCCceEEEEEccCCCEEEEee
Q 001336 472 PVYSICPHHKENIQFIFSTATDGKIKAWLYD------------------NLGSRVDYDAPGHSSTMMAYSADGARLFSCG 533 (1097)
Q Consensus 472 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 533 (1097)
.|.+++|++ ++.+|++++.||.|++||++ .......+..+...+.+++|+|++++|++++
T Consensus 144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 999999954 66899999999999999964 4555666667788999999999999999998
Q ss_pred eCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceE---------------
Q 001336 534 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN--VNLL--------------- 596 (1097)
Q Consensus 534 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~--------------- 596 (1097)
.+ +.|++||+++++.+..+..|.. .+.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 222 ~d----~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 222 HD----STVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp TT----TEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred CC----CEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 64 4799999999999999998876 89999999999877777 899999999987 4210
Q ss_pred -----------------------EEEecCCCCCCcceEEEc-CCC---CEEEEEECCCcEEEEEcCCCce
Q 001336 597 -----------------------ASIDADGGLQASPCIRFN-KEG---ILLAVSTNDNGIKILANADGIR 639 (1097)
Q Consensus 597 -----------------------~~~~~~~~~~~v~~v~~s-~~~---~~l~s~~~dg~i~iw~~~~~~~ 639 (1097)
..+. .+|...|++++|. ++| .+|++++.||.|++|++.++.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred cchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 1111 2557789999976 576 9999999999999999977643
No 68
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.2e-33 Score=320.71 Aligned_cols=349 Identities=14% Similarity=0.182 Sum_probs=245.5
Q ss_pred eEEEEeCCCCeeeEEecCCCCcceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEec-----------CCCCCCc
Q 001336 541 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNVNLLASIDA-----------DGGLQAS 608 (1097)
Q Consensus 541 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v 608 (1097)
.+++|++..++....+.+|.. .|.+++|+| ++++|++++.||.|++||+.+++....+.. .++...|
T Consensus 24 ~~~v~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (408)
T 4a11_B 24 TRRVLGLELNKDRDVERIHGG-GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV 102 (408)
T ss_dssp HHHHHTEEECTTEEECCCCSS-CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCE
T ss_pred cceeeccccCcceeeeeccCC-cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcE
Confidence 367788887888888888876 999999999 999999999999999999998776554431 1357789
Q ss_pred ceEEEcC-CCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCcccccccccccccccc
Q 001336 609 PCIRFNK-EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAA 687 (1097)
Q Consensus 609 ~~v~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1097)
.+++|+| ++.+|++++.||.|++|++.++ .....+.
T Consensus 103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~------------------------------------------ 139 (408)
T 4a11_B 103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTL-QTADVFN------------------------------------------ 139 (408)
T ss_dssp EEEEECTTCTTCEEEEETTSEEEEEETTTT-EEEEEEE------------------------------------------
T ss_pred EEEEEccCCCcEEEEEeCCCeEEEeeCCCC-ccceecc------------------------------------------
Confidence 9999999 7789999999999999998765 2111110
Q ss_pred ccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEec
Q 001336 688 AMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 767 (1097)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~ 767 (1097)
T Consensus 140 -------------------------------------------------------------------------------- 139 (408)
T 4a11_B 140 -------------------------------------------------------------------------------- 139 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEcc---CCCEEEEEe-CCeEEEEEcCCCceeEEe
Q 001336 768 WPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK---NDSYVMSAS-GGKISLFNMMTFKTMTTF 843 (1097)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~---dg~~la~~s-dg~i~iwd~~~~~~~~~~ 843 (1097)
+...+.++++++ ++.++++++ ++.|++||+.+++.+..+
T Consensus 140 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 182 (408)
T 4a11_B 140 -------------------------------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL 182 (408)
T ss_dssp -------------------------------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE
T ss_pred -------------------------------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee
Confidence 223344555555 445888888 899999999999999999
Q ss_pred CCCCCCeEEEEEeCCCCC-EEEEEECCCcEEEEEcccce-EEEEe---------------cccccCeEEEEEecCCCEEE
Q 001336 844 MPPPPAATFLAFHPQDNN-IIAIGMEDSSIQIYNVRVDE-VKTKL---------------KGHQKRITGLAFSNTLNVLV 906 (1097)
Q Consensus 844 ~~~~~~i~~l~~sp~~~~-~la~g~~dg~v~vwd~~~~~-~~~~l---------------~~h~~~V~~l~~s~dg~~l~ 906 (1097)
..|...|.+++|+| ++. ++++|+.||.|++||+.++. .+..+ .+|...|++++|+|++++|+
T Consensus 183 ~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 261 (408)
T 4a11_B 183 QGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL 261 (408)
T ss_dssp CCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE
T ss_pred cCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE
Confidence 99999999999999 666 69999999999999998764 34444 57899999999999999999
Q ss_pred EEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeeeeeccCCCCCE
Q 001336 907 SSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPI 986 (1097)
Q Consensus 907 s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v 986 (1097)
+++.|+.|++||+.+++.............. ............+.+++++.++.|++||+.+++.+..+. +|...|
T Consensus 262 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~v 337 (408)
T 4a11_B 262 TVGTDNRMRLWNSSNGENTLVNYGKVCNNSK--KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK--GHYKTV 337 (408)
T ss_dssp EEETTSCEEEEETTTCCBCCCCCCCCCCCCS--SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC--CCSSCE
T ss_pred EecCCCeEEEEECCCCccceecccccccccc--ccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec--cCCCeE
Confidence 9999999999999987643221111111111 022233334445666666899999999999999998886 899999
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCC
Q 001336 987 THATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1066 (1097)
Q Consensus 987 ~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~ 1066 (1097)
++++|+||+++|++++.||.|++||+.+++.+....... .. ..+.|.....+.+.+.|+.+++|+.+.
T Consensus 338 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~----------~~--~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 338 DCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT----------TK--SQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEEECC----------------------------------------------------
T ss_pred EEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE----------ec--cccccccceeecccCccCceeecCCcc
Confidence 999999999999999999999999999988765443111 11 123344556777888999999998765
Q ss_pred C
Q 001336 1067 A 1067 (1097)
Q Consensus 1067 ~ 1067 (1097)
-
T Consensus 406 ~ 406 (408)
T 4a11_B 406 F 406 (408)
T ss_dssp -
T ss_pred c
Confidence 3
No 69
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=303.78 Aligned_cols=288 Identities=18% Similarity=0.263 Sum_probs=249.5
Q ss_pred ceEEEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEE
Q 001336 310 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 388 (1097)
Q Consensus 310 ~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 388 (1097)
.+...++. |...|++++| |++++ +++|+.||.|+|||+.+++.... +..|...|.+++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~ 66 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVC 66 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEE
Confidence 45666776 9999999999 99985 68999999999999988776543 567899999999
Q ss_pred EccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeec
Q 001336 389 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 468 (1097)
Q Consensus 389 ~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 468 (1097)
|+|++++|++|+.||.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..
T Consensus 67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~ 140 (313)
T 3odt_A 67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQA 140 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEeccc
Confidence 9999999999999999999999876433444468899999999999 466 799999999999999 7888899999
Q ss_pred CCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecC-CCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeC
Q 001336 469 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 547 (1097)
Q Consensus 469 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 547 (1097)
|...|.++++.+. ++..+++++.||.|++||. ......+.. +...+.+++|+|++. +++++. ++.|++||+
T Consensus 141 ~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~ 212 (313)
T 3odt_A 141 HNASVWDAKVVSF-SENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDM 212 (313)
T ss_dssp CSSCEEEEEEEET-TTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEET
T ss_pred CCCceeEEEEccC-CCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEEC
Confidence 9999999998652 4579999999999999993 344455555 777999999999998 777765 447999999
Q ss_pred CCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCC
Q 001336 548 SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 627 (1097)
Q Consensus 548 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg 627 (1097)
++++.+..+.+|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+ ...|.+++|+|++. +++++.||
T Consensus 213 ~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~-~~~~~~dg 287 (313)
T 3odt_A 213 HTGDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP--AISIWSVDCMSNGD-IIVGSSDN 287 (313)
T ss_dssp TTCCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS--SSCEEEEEECTTSC-EEEEETTS
T ss_pred CchhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc--CceEEEEEEccCCC-EEEEeCCC
Confidence 99999999998887 89999999999 6999999999999999999999999866 56899999999998 66799999
Q ss_pred cEEEEEcCCC
Q 001336 628 GIKILANADG 637 (1097)
Q Consensus 628 ~i~iw~~~~~ 637 (1097)
.|++|++.++
T Consensus 288 ~i~iw~~~~~ 297 (313)
T 3odt_A 288 LVRIFSQEKS 297 (313)
T ss_dssp CEEEEESCGG
T ss_pred cEEEEeCCCC
Confidence 9999999876
No 70
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=327.24 Aligned_cols=314 Identities=15% Similarity=0.212 Sum_probs=254.3
Q ss_pred eCCCCCCcceeecCCCCceEEEEe-e-cCCCeeEEEEcc-CCCeEEEEEeCCCeEEEEEcCC---CceeeeeeeeEeecc
Q 001336 293 YTPQSLGQSSYSTDDLPKTVVMTL-N-QGSAVKSMDFHP-VQQILLVVGTNMGDVMLWEVGS---RERIAVKSFKVWELG 366 (1097)
Q Consensus 293 ~s~~~~~~~~~~~~~~~~~~~~~~-~-h~~~V~~v~fsp-dg~~lla~gs~dg~i~iwd~~~---~~~~~~~~~~~~~~~ 366 (1097)
|++++..++.........+.+..+ . |.+.|++++|+| +++ +|++|+.||+|+|||+.+ +.....
T Consensus 35 f~~~~~~~~~~~~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~--------- 104 (437)
T 3gre_A 35 FGPIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS--------- 104 (437)
T ss_dssp GCCCCCCCCCCCGGGCCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC---------
T ss_pred cCCccccccccccccccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce---------
Confidence 788888877654444557788888 4 789999999999 888 569999999999999976 331110
Q ss_pred ccCccccccccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEcc---CCeeeeee-----ee--eec--ccCcEEEEE-
Q 001336 367 ACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYH---GGDELRNH-----LE--IEA--HVGSVNDLA- 433 (1097)
Q Consensus 367 ~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~---~~~~~~~~-----~~--l~~--h~~~V~~l~- 433 (1097)
....+|...|.+++|+|++++|++|+.||.|++||+. +++.+... .. +.. +...+.++.
T Consensus 105 --------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 176 (437)
T 3gre_A 105 --------SLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRA 176 (437)
T ss_dssp --------SEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEE
T ss_pred --------eeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEE
Confidence 0122599999999999999999999999999999995 44433211 01 112 556777777
Q ss_pred -EecCCCcEEEEEEeCCCcEEEEECCCCceeEEeec--CCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeee
Q 001336 434 -FSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG--HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY 510 (1097)
Q Consensus 434 -~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 510 (1097)
+++++. +|++|+.|+.|++||+.+++++..+.+ |...|.+++|+ +++.+|++|+.||.|++||+++......+
T Consensus 177 ~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 252 (437)
T 3gre_A 177 FVNEEKS--LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICID--EECCVLILGTTRGIIDIWDIRFNVLIRSW 252 (437)
T ss_dssp EECSSCE--EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEEC--TTSCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEcCCCC--EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEEC--CCCCEEEEEcCCCeEEEEEcCCccEEEEE
Confidence 557777 899999999999999999999999998 89999999994 55689999999999999999987777766
Q ss_pred c-CCCCceEEEEEc----cCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCC-------------------------C
Q 001336 511 D-APGHSSTMMAYS----ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL-------------------------G 560 (1097)
Q Consensus 511 ~-~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-------------------------~ 560 (1097)
. .+...|.+++|+ +++.+|++++. ++.|++||+++++.+..+.++ +
T Consensus 253 ~~~~~~~v~~~~~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 328 (437)
T 3gre_A 253 SFGDHAPITHVEVCQFYGKNSVIVVGGSS----KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS 328 (437)
T ss_dssp BCTTCEEEEEEEECTTTCTTEEEEEEEST----TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred ecCCCCceEEEEeccccCCCccEEEEEcC----CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence 5 555689999665 46778988875 457999999999988888755 2
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC-----------------------------------CC
Q 001336 561 KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG-----------------------------------GL 605 (1097)
Q Consensus 561 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------------------~~ 605 (1097)
...|.+++|+ ++++|++++.||.|++||+.+++.+..+..+. |.
T Consensus 329 ~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 407 (437)
T 3gre_A 329 LNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHH 407 (437)
T ss_dssp GGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------C
T ss_pred CCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccc
Confidence 3358889999 77899999999999999999999888776531 57
Q ss_pred CCcceEEEcCC--CCEEEEEECCCcEEEEE
Q 001336 606 QASPCIRFNKE--GILLAVSTNDNGIKILA 633 (1097)
Q Consensus 606 ~~v~~v~~s~~--~~~l~s~~~dg~i~iw~ 633 (1097)
..|++++|+++ +.+|++|+.||.|+||+
T Consensus 408 ~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 408 DIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 78999999997 78999999999999994
No 71
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.4e-33 Score=315.63 Aligned_cols=304 Identities=12% Similarity=0.101 Sum_probs=233.4
Q ss_pred eecCCCeeEEEEccCCCeEEEEEeCC-------CeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEE
Q 001336 316 LNQGSAVKSMDFHPVQQILLVVGTNM-------GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 388 (1097)
Q Consensus 316 ~~h~~~V~~v~fspdg~~lla~gs~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 388 (1097)
+.-..+|++++|+|||+ +|++|+.| +.|+||++..+.......+.. .....+.+|...|.+++
T Consensus 11 ~~~g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~---------~~~~~l~~~~~~v~s~~ 80 (365)
T 4h5i_A 11 YNVGYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHI---------LSEFALEDNDDSPTAID 80 (365)
T ss_dssp EECSSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEE---------EEEEECCTTSCCCCEEE
T ss_pred cCCCCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeee---------eeEEEccCCCCceEEEE
Confidence 33456899999999998 55777653 359999998665432111110 01112678999999887
Q ss_pred EccCCCEEEEEE-----------CCCEEEEEEccCCeeeee-ee-----eeecccCcEEEEEEecCCCcEEEEEEeCCCc
Q 001336 389 WSPDGTLFGVAY-----------SKHIVHLYTYHGGDELRN-HL-----EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV 451 (1097)
Q Consensus 389 ~spd~~~las~~-----------~dg~i~iwd~~~~~~~~~-~~-----~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~ 451 (1097)
+ +++.+++|. .|+.+++|++.++..... .. ....+...+.+++|||||+.+.+++++.|++
T Consensus 81 ~--~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~ 158 (365)
T 4h5i_A 81 A--SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAI 158 (365)
T ss_dssp E--ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCE
T ss_pred e--CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCE
Confidence 6 455666653 577899999876542211 11 1223556799999999999544456668999
Q ss_pred EEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeee--cCCCCceEEEEEccCCCEE
Q 001336 452 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY--DAPGHSSTMMAYSADGARL 529 (1097)
Q Consensus 452 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l 529 (1097)
|+|||+.+++++..+. |...|.+++| +++|+++++++.++ +++|+..++...... ..+...+.+++|+|+++++
T Consensus 159 i~iwd~~~~~~~~~~~-~~~~V~~v~f--spdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l 234 (365)
T 4h5i_A 159 MRIIDPSDLTEKFEIE-TRGEVKDLHF--STDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVL 234 (365)
T ss_dssp EEEEETTTTEEEEEEE-CSSCCCEEEE--CTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEE
T ss_pred EEEeECCCCcEEEEeC-CCCceEEEEE--ccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEE
Confidence 9999999999999886 7788999999 56778999998654 566666666655433 3455689999999999999
Q ss_pred EEeeeCCCCCceEEEEeCCCCee----eEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE-ecCCC
Q 001336 530 FSCGTNKEGESYLVEWNESEGAV----KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI-DADGG 604 (1097)
Q Consensus 530 ~~~~~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~ 604 (1097)
++++.++.....+++|+...... ...+.+|.. .|.+++|+|+|++|++|+.|+.|+|||+.+++++..+ .+|
T Consensus 235 ~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH-- 311 (365)
T 4h5i_A 235 IAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH-- 311 (365)
T ss_dssp EEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--
T ss_pred EEEecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--
Confidence 99998876667889999876643 345677766 8999999999999999999999999999999998876 444
Q ss_pred CCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001336 605 LQASPCIRFNKEGILLAVSTNDNGIKILANADGI 638 (1097)
Q Consensus 605 ~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~ 638 (1097)
...|++++|+|||++||+|+.|++|+||++....
T Consensus 312 ~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 312 SFAITEVTISPDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 7799999999999999999999999999997653
No 72
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-32 Score=306.64 Aligned_cols=302 Identities=12% Similarity=0.161 Sum_probs=247.7
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001336 376 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 455 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 455 (1097)
.+.+|...|++++|+|++++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW 101 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 378999999999999999999999999999999999987665 5788999999999999999 89999999999999
Q ss_pred ECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCC-----CeEEEEEcCCCCc-----------eeeecCCCC--ce
Q 001336 456 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATD-----GKIKAWLYDNLGS-----------RVDYDAPGH--SS 517 (1097)
Q Consensus 456 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~-----------~~~~~~~~~--~v 517 (1097)
|+.+++.+..+. |...|.+++|+ +++.++++++.+ +.|++||+..... ...+..+.. .+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFS--PCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEEC--TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred ECCCCcEEEEee-cCCCeEEEEEc--cCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 999999999888 88999999994 566899999998 9999999986543 223333444 89
Q ss_pred EEEEEccCCCEEEEeeeCCCCCceEEEEeCCC-CeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE
Q 001336 518 TMMAYSADGARLFSCGTNKEGESYLVEWNESE-GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL 596 (1097)
Q Consensus 518 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 596 (1097)
.+++|+|+++++++++.+ +.|.+||+.+ ++.+..+..|.. .+.+++|+|++++|++++.||.|++||+.+++.+
T Consensus 179 ~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHKD----GKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp EEEEECGGGCEEEEEETT----SEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEcCCCCEEEEEcCC----CEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence 999999999999998764 4799999998 788888888876 8999999999999999999999999999999999
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccc
Q 001336 597 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVG 676 (1097)
Q Consensus 597 ~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1097)
..+.. ...+.+++|+|++.++++++.++.+.+|......
T Consensus 254 ~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------------------------- 292 (369)
T 3zwl_B 254 KKYET---DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANE-------------------------------------- 292 (369)
T ss_dssp EEEEC---SSCEEEEEECSSSSEEEEEECCC-------------------------------------------------
T ss_pred eeecC---CCCceeEEecCCCceEEEeecCCCceEEEEecCC--------------------------------------
Confidence 88873 5578999999999999999999855554432210
Q ss_pred cccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeee
Q 001336 677 TSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILA 756 (1097)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~ 756 (1097)
....+++|++..... ...+ .+|...|.+++|+|++++|++
T Consensus 293 ---------------------------------~~~~i~~~d~~~~~~---~~~~----~~~~~~v~~~~~s~~~~~l~s 332 (369)
T 3zwl_B 293 ---------------------------------GKFEARFYHKIFEEE---IGRV----QGHFGPLNTVAISPQGTSYAS 332 (369)
T ss_dssp -----------------------------------CEEEEEETTTCCE---EEEE----ECCSSCEEEEEECTTSSEEEE
T ss_pred ---------------------------------CcceeEEEecCCCcc---hhhe----ecccCcEEEEEECCCCCEEEE
Confidence 002344455432211 1111 237789999999999999999
Q ss_pred eccCcEEEEeccCCC
Q 001336 757 LASNAVHKLWKWPRN 771 (1097)
Q Consensus 757 ~~~dg~i~vw~~~~~ 771 (1097)
++.||.|++|++...
T Consensus 333 ~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 333 GGEDGFIRLHHFEKS 347 (369)
T ss_dssp EETTSEEEEEEECHH
T ss_pred EcCCCeEEEEECccc
Confidence 999999999998743
No 73
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.6e-32 Score=311.10 Aligned_cols=308 Identities=15% Similarity=0.194 Sum_probs=248.2
Q ss_pred EEeCCCCeeeEEecCCCCcceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcC-CCCEEE
Q 001336 544 EWNESEGAVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGILLA 621 (1097)
Q Consensus 544 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~ 621 (1097)
+|++........+.+|.. .|.+++|+|++ ++|++++.||.|++||+.+++....+...++...|.+++|+| ++.+|+
T Consensus 57 ~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDR-RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTCEEEEEECCCSS-CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred cccccccceEEeccCCCC-CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 345556677788888887 99999999999 999999999999999999999888887656688999999999 789999
Q ss_pred EEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccc
Q 001336 622 VSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTD 701 (1097)
Q Consensus 622 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1097)
+++.|+.|++||+.+. ....+..
T Consensus 136 s~~~d~~i~iwd~~~~--~~~~~~~------------------------------------------------------- 158 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGS--VIQVFAK------------------------------------------------------- 158 (383)
T ss_dssp EEETTTEEEEEETTSC--EEEEEEC-------------------------------------------------------
T ss_pred EEeCCCEEEEEECCCC--ceEEEec-------------------------------------------------------
Confidence 9999999999998642 1111100
Q ss_pred cCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCcccc
Q 001336 702 VKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATT 781 (1097)
Q Consensus 702 ~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 781 (1097)
T Consensus 159 -------------------------------------------------------------------------------- 158 (383)
T 3ei3_B 159 -------------------------------------------------------------------------------- 158 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCC
Q 001336 782 NQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDN 860 (1097)
Q Consensus 782 ~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~ 860 (1097)
.. .+...|.+++|+|++++|++++ |+.|++||+ +++.+..+.+|...|.+++|+| ++
T Consensus 159 ------------------~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~ 216 (383)
T 3ei3_B 159 ------------------TD--SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RC 216 (383)
T ss_dssp ------------------CC--CSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SC
T ss_pred ------------------cC--CCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CC
Confidence 00 1557788999999999999998 899999998 6788889999999999999999 77
Q ss_pred C-EEEEEECCCcEEEEEccc----ceEEEEecccccCeEEEEEec-CCCEEEEEeCCCcEEEEEcCCCcccceeeEeec-
Q 001336 861 N-IIAIGMEDSSIQIYNVRV----DEVKTKLKGHQKRITGLAFSN-TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIP- 933 (1097)
Q Consensus 861 ~-~la~g~~dg~v~vwd~~~----~~~~~~l~~h~~~V~~l~~s~-dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~- 933 (1097)
+ +|++++.|+.|++||+.+ ++++..+ +|...|++++|+| ++.+|++++.|+.|++||+.+++..........
T Consensus 217 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 295 (383)
T 3ei3_B 217 DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHR 295 (383)
T ss_dssp TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBC
T ss_pred CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccc
Confidence 7 999999999999999998 6677766 6999999999999 999999999999999999998765432211100
Q ss_pred -CCCCC-------CccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCC
Q 001336 934 -NGRTA-------SALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEG 1005 (1097)
Q Consensus 934 -~~~~~-------~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg 1005 (1097)
..+.. ....+..++|+||+++ ..+.|+.|++||+.+++.+..+....|...+..++|+|||++|++++ |+
T Consensus 296 ~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~ 373 (383)
T 3ei3_B 296 QFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF 373 (383)
T ss_dssp CCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT
T ss_pred ccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC
Confidence 01110 0022333555566655 22478999999999999998887555678888899999999999997 99
Q ss_pred eEEEEeCCC
Q 001336 1006 SVGVLTAST 1014 (1097)
Q Consensus 1006 ~v~vwd~~~ 1014 (1097)
.|++||+++
T Consensus 374 ~i~iw~~~~ 382 (383)
T 3ei3_B 374 NILIWNRED 382 (383)
T ss_dssp EEEEEECC-
T ss_pred cEEEEecCC
Confidence 999999875
No 74
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3e-33 Score=324.09 Aligned_cols=303 Identities=14% Similarity=0.180 Sum_probs=230.8
Q ss_pred eEEecCCCCcceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcC-CCCEEEEEECCCcEE
Q 001336 553 KRTYHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGILLAVSTNDNGIK 630 (1097)
Q Consensus 553 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~~dg~i~ 630 (1097)
.....+|.. .|++++|+| ++++|++|+.||.|+|||+.+++....+...+|...|++++|+| ++.+|++++.||+|+
T Consensus 112 ~~~~~~~~~-~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 112 LQKAAPFDR-RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp CCEEEECSS-CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred cccCCCCCC-CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 344455555 899999999 45789999999999999999888777776666788999999998 789999999999999
Q ss_pred EEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCccccccc
Q 001336 631 ILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEA 710 (1097)
Q Consensus 631 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1097)
+||+.++ ....+..
T Consensus 191 iwd~~~~--~~~~~~~---------------------------------------------------------------- 204 (435)
T 4e54_B 191 LQDFKGN--ILRVFAS---------------------------------------------------------------- 204 (435)
T ss_dssp EEETTSC--EEEEEEC----------------------------------------------------------------
T ss_pred EeeccCC--ceeEEec----------------------------------------------------------------
Confidence 9998654 1110000
Q ss_pred ccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCC
Q 001336 711 VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP 790 (1097)
Q Consensus 711 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~ 790 (1097)
. +
T Consensus 205 -----------------------------------------------~-~------------------------------ 206 (435)
T 4e54_B 205 -----------------------------------------------S-D------------------------------ 206 (435)
T ss_dssp -----------------------------------------------C-S------------------------------
T ss_pred -----------------------------------------------c-C------------------------------
Confidence 0 0
Q ss_pred CCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECC
Q 001336 791 PSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED 869 (1097)
Q Consensus 791 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~d 869 (1097)
.+...+.+++|+|++++|++++ ||.|++||+. ++.+..+.+|...|++++|+|++..++++|+.|
T Consensus 207 -------------~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 207 -------------TINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp -------------SCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred -------------CCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence 0334567788999999999998 8999999985 466778889999999999999555689999999
Q ss_pred CcEEEEEcccceEEE---EecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEE
Q 001336 870 SSIQIYNVRVDEVKT---KLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRV 946 (1097)
Q Consensus 870 g~v~vwd~~~~~~~~---~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l 946 (1097)
+.|+|||+.+++... ...+|...|++++|+|+|.+|++++.|+.|++||+.+++....... ..........+...
T Consensus 273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~ 350 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP--HPHRHFQHLTPIKA 350 (435)
T ss_dssp SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECC--CCCCCCSSSCCCBC
T ss_pred ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEec--ccccccccceeEEE
Confidence 999999998765433 3467999999999999999999999999999999998764322111 11000001223345
Q ss_pred EEcCCCcEEEEE-------------eCCeEEEEeCCCcceeeeeeccCCCCCEEEE-EEecCCCEEEEEecCCeEEEEeC
Q 001336 947 QFHLDQTHLLAV-------------HETQIAIYEAPKLECLKQFVPREASGPITHA-TYSCDSQSIYVAFEEGSVGVLTA 1012 (1097)
Q Consensus 947 ~~s~dg~~l~~~-------------~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v-~~s~dg~~l~s~s~Dg~v~vwd~ 1012 (1097)
.|+|++.+++++ .++.|++||..+++.+..+.. +|...|.++ +|+|||++|++|+ |++|+||++
T Consensus 351 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~-~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 351 AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD-PESSGISSLNEFNPMGDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC-SSCCCCCCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC-CCCCcEEEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence 666666666553 235799999999998887653 678888887 6999999999876 889999999
Q ss_pred CCCcee
Q 001336 1013 STLRLR 1018 (1097)
Q Consensus 1013 ~~~~~~ 1018 (1097)
++++.+
T Consensus 429 ~~gk~r 434 (435)
T 4e54_B 429 QEARTR 434 (435)
T ss_dssp C-----
T ss_pred CcCeee
Confidence 988753
No 75
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.5e-32 Score=313.07 Aligned_cols=256 Identities=11% Similarity=0.066 Sum_probs=221.5
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCe------eeeeeeeeecccCcEEEEEEecC----C---CcEE
Q 001336 376 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD------ELRNHLEIEAHVGSVNDLAFSYP----N---KQLS 442 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~------~~~~~~~l~~h~~~V~~l~~s~d----~---~~~~ 442 (1097)
.+.+|.+.|++++|+| ++|++|+.||.|++||+.+++ .+. .+.+|...|.+++|+|+ + + +
T Consensus 11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~g~~~~--~ 83 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSY---SHFVHKSGLHHVDVLQAIERDAFELC--L 83 (397)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEE---EEECCTTCEEEEEEEEEEETTTEEEE--E
T ss_pred hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcce---EEecCCCcEEEEEEecccccCCcccc--E
Confidence 4789999999999999 899999999999999999876 333 47799999999999999 8 7 8
Q ss_pred EEEEeCCCcEEEEECCCCce-----eEEeecC-----CcCeEEEeeccc--CCccE-EEEEcCCCeEEEEEcCC------
Q 001336 443 VVTCGEDRVIKVWDAVTGTK-----QYIFEGH-----ESPVYSICPHHK--ENIQF-IFSTATDGKIKAWLYDN------ 503 (1097)
Q Consensus 443 l~s~s~d~~i~iwd~~~~~~-----~~~~~~h-----~~~v~~~~~~~~--~~~~~-l~s~~~dg~i~iwd~~~------ 503 (1097)
|++++.|+.|++||+.+++. +..+..| ...|.+++|++. +++.+ |++++.||.|++||++.
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 99999999999999999887 8889889 599999999622 56688 99999999999999988
Q ss_pred CCcee-----ee-------cCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecC---C---CCcceE
Q 001336 504 LGSRV-----DY-------DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG---L---GKRSVG 565 (1097)
Q Consensus 504 ~~~~~-----~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~---~~~~v~ 565 (1097)
..... .+ ..+...+.+++|+|++ ++++++. ++.|++||+++++.+..+.. | .. .+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~h~~~~~-~i~ 237 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSN-SIR 237 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCC-CEE
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC----CCcEEEEECCCCceeEEEeccccccccCC-ccc
Confidence 55544 44 3467789999999999 8888875 44799999999999999988 7 55 899
Q ss_pred EEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEEEecCC-----------CCCCcceEEEcCCCCEEEEEECCCcEEE
Q 001336 566 VVQFDTTKNRFLAAGDE---FMIKFWDMDNVNLLASIDADG-----------GLQASPCIRFNKEGILLAVSTNDNGIKI 631 (1097)
Q Consensus 566 ~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~~~~l~s~~~dg~i~i 631 (1097)
+++|+|++++|++++.| |.|++||+.+++.+..+.... +...|.+++|+|++.+|++++.||.|++
T Consensus 238 ~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 317 (397)
T 1sq9_A 238 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 317 (397)
T ss_dssp EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred eEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 99999999999999999 999999999999999987610 3678999999999999999999999999
Q ss_pred EEcCCCceEEEEec
Q 001336 632 LANADGIRLLRTVE 645 (1097)
Q Consensus 632 w~~~~~~~~~~~~~ 645 (1097)
||+.++ +.+..+.
T Consensus 318 wd~~~~-~~~~~~~ 330 (397)
T 1sq9_A 318 WDVKTK-ERITTLN 330 (397)
T ss_dssp EETTTT-EEEEEEE
T ss_pred EEcCCC-ceeEEEe
Confidence 999988 5555554
No 76
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.5e-32 Score=335.23 Aligned_cols=256 Identities=19% Similarity=0.254 Sum_probs=218.2
Q ss_pred ccCCCCCCeEEEEEccC-CCEEEEEECCCEEEEEEccCCeee--eeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcE
Q 001336 376 LSSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDEL--RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 452 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd-~~~las~~~dg~i~iwd~~~~~~~--~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i 452 (1097)
.+.+|.+.|++++|+|+ +++|++|+.|++|++|++.++... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence 37799999999999986 479999999999999999764321 12235889999999999999999 89999999999
Q ss_pred EEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeee---cCCCCceEEEEEccCC--C
Q 001336 453 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY---DAPGHSSTMMAYSADG--A 527 (1097)
Q Consensus 453 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~--~ 527 (1097)
++||+.+++.+..+.+|...|.+++|+ +++.+|++++.|++|++||.......... ..|...|.+++|+|++ .
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s--~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFS--LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEEC--TTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEe--CCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 999999999999999999999999995 56689999999999999998643322221 3456689999999987 5
Q ss_pred EEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCC
Q 001336 528 RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQA 607 (1097)
Q Consensus 528 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 607 (1097)
.+++++.|+ .|++||++++++...+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+.. ...
T Consensus 533 ~l~s~s~d~----~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~---~~~ 604 (694)
T 3dm0_A 533 TIVSASWDK----TVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA---NSV 604 (694)
T ss_dssp EEEEEETTS----CEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC---SSC
T ss_pred eEEEEeCCC----eEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC---CCc
Confidence 788887644 699999999999999999987 899999999999999999999999999999998877754 346
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEec
Q 001336 608 SPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVE 645 (1097)
Q Consensus 608 v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 645 (1097)
|.+++|+|++.++++++ ++.|++||+.++ ..+..+.
T Consensus 605 v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~-~~~~~~~ 640 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAAT-EHGIKIWDLESK-SIVEDLK 640 (694)
T ss_dssp EEEEEECSSSSEEEEEE-TTEEEEEETTTT-EEEEEEC
T ss_pred EEEEEEcCCCcEEEEEc-CCCEEEEECCCC-CChhhhc
Confidence 89999999998887766 556999999988 5555554
No 77
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=8.5e-33 Score=313.84 Aligned_cols=324 Identities=7% Similarity=0.025 Sum_probs=252.1
Q ss_pred CCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001336 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN--LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 558 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~ 635 (1097)
.|.. .|.+++|+|++++|++++.|+.|++||+.+++ .+..+..| ...|.+++|+|++.+|++++.||.|++|++.
T Consensus 6 ~~~~-~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 6 FLVE-PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH--NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp SCSS-CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECC--SSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred ccCC-CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCC--CCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 3444 89999999999999999999999999999987 77777755 6789999999999999999999999999997
Q ss_pred CCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccc
Q 001336 636 DGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSR 715 (1097)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 715 (1097)
++ +......
T Consensus 83 ~~-~~~~~~~---------------------------------------------------------------------- 91 (372)
T 1k8k_C 83 GR-TWKPTLV---------------------------------------------------------------------- 91 (372)
T ss_dssp TT-EEEEEEE----------------------------------------------------------------------
T ss_pred CC-eeeeeEE----------------------------------------------------------------------
Confidence 76 2211110
Q ss_pred cccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCcc
Q 001336 716 IWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGIL 795 (1097)
Q Consensus 716 ~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 795 (1097)
...|...|.+++|+|++++|++++.||.+++|++..... ...
T Consensus 92 -------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-------------------~~~ 133 (372)
T 1k8k_C 92 -------------------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND-------------------WWV 133 (372)
T ss_dssp -------------------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT-------------------EEE
T ss_pred -------------------eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc-------------------cee
Confidence 012667899999999999999999999999998763210 001
Q ss_pred ccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEc------------------CCCceeEEeCCCCCCeEEEEEe
Q 001336 796 MTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNM------------------MTFKTMTTFMPPPPAATFLAFH 856 (1097)
Q Consensus 796 ~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~------------------~~~~~~~~~~~~~~~i~~l~~s 856 (1097)
...... .|...|.+++|+|++++|++++ |+.|++||+ .+++++..+.+|...|.+++|+
T Consensus 134 ~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 211 (372)
T 1k8k_C 134 CKHIKK--PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS 211 (372)
T ss_dssp EEEECT--TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC
T ss_pred eeeeec--ccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC
Confidence 111112 2789999999999999999999 999999995 4678889999999999999999
Q ss_pred CCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCC--CcccceeeEeecC
Q 001336 857 PQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG--WEKQASKFLTIPN 934 (1097)
Q Consensus 857 p~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~--~~~~~~~~~~~~~ 934 (1097)
| ++++|++++.||.|++||+.+++.+..+..|..+|.+++|+|++.+|+++ .|+.|++|++.. ++. .......
T Consensus 212 ~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~---~~~~~~~ 286 (372)
T 1k8k_C 212 A-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKL---SFGGRLD 286 (372)
T ss_dssp S-SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEE---EECCCCC
T ss_pred C-CCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceE---EEeeccC
Confidence 9 89999999999999999999999999999999999999999999988877 899999999987 431 1111111
Q ss_pred CCCCCccCCeEEEEcCCCcEEEEEeCCeEEEE---eCCCccee------eeeeccCCCCCEEEEEEe-cCC---CEEEEE
Q 001336 935 GRTASALADTRVQFHLDQTHLLAVHETQIAIY---EAPKLECL------KQFVPREASGPITHATYS-CDS---QSIYVA 1001 (1097)
Q Consensus 935 ~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vw---d~~~~~~~------~~~~~~~h~~~v~~v~~s-~dg---~~l~s~ 1001 (1097)
.+.. -..+....+.+| +.. +... ..+ ..+|...|++++|. ++| .+|+++
T Consensus 287 ~~~~----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~g~~~~~l~s~ 348 (372)
T 1k8k_C 287 VPKQ----------------SSQRGLTARERFQNLDKK-ASSEGSAAAGAGL-DSLHKNSVSQISVLSGGKAKCSQFCTT 348 (372)
T ss_dssp CC------------------------CHHHHHHHCCCC-C---------CCC-SSSSSSCEEEEEEEESTTTSCSEEEEE
T ss_pred cccc----------------chhhhcchhhhhhhcccc-cccccCccccccc-cccccCCcceeEEecCCCcceeeEEEe
Confidence 1110 011122334455 322 1111 111 13899999999966 677 999999
Q ss_pred ecCCeEEEEeCCCCcee
Q 001336 1002 FEEGSVGVLTASTLRLR 1018 (1097)
Q Consensus 1002 s~Dg~v~vwd~~~~~~~ 1018 (1097)
+.||+|++|++.+++.+
T Consensus 349 ~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 349 GMDGGMSIWDVRSLESA 365 (372)
T ss_dssp ETTSEEEEEEHHHHHHH
T ss_pred cCCCceEEEEecChhHh
Confidence 99999999999876543
No 78
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.5e-31 Score=306.58 Aligned_cols=282 Identities=14% Similarity=0.243 Sum_probs=240.9
Q ss_pred CeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEE
Q 001336 321 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 400 (1097)
Q Consensus 321 ~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 400 (1097)
..+.|+||+++ +||+|. |++|+|||..+++.+.... +.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~-----------------~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCcEEEEEECCCCCEEEEEE
Confidence 45689999865 667775 8999999999998765311 467889999999999999999999
Q ss_pred CCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEeecCCcCeEEEeec
Q 001336 401 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSICPH 479 (1097)
Q Consensus 401 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~ 479 (1097)
.||.|+|||+.+++.+. .+.+|...|.+++|+ +. +|++|+.|+.+++||.... ..+.++.+|...+..+.+
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~- 238 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW- 238 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE-
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeee-
Confidence 99999999999998765 578999999998885 56 7999999999999998864 556788999999999988
Q ss_pred ccCCccEEEEEcCCCeEEEEEcCCCCc----eeeecCCCCceEEEEEccCCCEE-EEeeeCCCCCceEEEEeCCCCeeeE
Q 001336 480 HKENIQFIFSTATDGKIKAWLYDNLGS----RVDYDAPGHSSTMMAYSADGARL-FSCGTNKEGESYLVEWNESEGAVKR 554 (1097)
Q Consensus 480 ~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~~~~~~i~~wd~~~~~~~~ 554 (1097)
.+++.++++++.|+.+++|+....+. ......+...|.+++|+|++..+ ++++. ..++.|++||+.++++..
T Consensus 239 -~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 239 -APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp -CTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred -cCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 55668999999999999999987653 33455677799999999977654 44432 336689999999999999
Q ss_pred EecCCCCcceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEE
Q 001336 555 TYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL 632 (1097)
Q Consensus 555 ~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw 632 (1097)
.+..+. .+.++.|+++++.+++++ .|+.|++||+.+++++..+.+| ...|.+++|+|+|.+|++|+.|++|+||
T Consensus 316 ~~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH--~~~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 316 AVDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp EEECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred eecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 888765 688899999999998876 7999999999999999999866 7799999999999999999999999999
Q ss_pred EcCCC
Q 001336 633 ANADG 637 (1097)
Q Consensus 633 ~~~~~ 637 (1097)
++.+.
T Consensus 392 dv~~~ 396 (420)
T 4gga_A 392 RCFEL 396 (420)
T ss_dssp CCSCS
T ss_pred ECCCC
Confidence 98765
No 79
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.5e-32 Score=307.30 Aligned_cols=203 Identities=14% Similarity=0.116 Sum_probs=170.1
Q ss_pred CCCCeeEEEEccCCCEEEEEe---CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccce
Q 001336 805 PEDAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE 881 (1097)
Q Consensus 805 h~~~v~~l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~ 881 (1097)
+...+.+++|||||+++++++ |++|+|||+.+++++..+. |...|.+++|+| ++++|++++. +.+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~-~~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITG-SSLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECS-SCEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccc-eeEEEEEeccCc
Confidence 556789999999999987664 6899999999999999886 778899999999 9999999985 557777777776
Q ss_pred EEE--EecccccCeEEEEEecCCCEEEEEeCCC----cEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEE
Q 001336 882 VKT--KLKGHQKRITGLAFSNTLNVLVSSGADS----QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHL 955 (1097)
Q Consensus 882 ~~~--~l~~h~~~V~~l~~s~dg~~l~s~~~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 955 (1097)
.+. ...+|...|.+++|+|+++++++++.|+ .+++|++.......... ....++. ..|.+++|||||++|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~---~~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRS-KQVTNRF---KGITSMDVDMKGELA 284 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEE-EEEESSC---SCEEEEEECTTSCEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceee-eeecCCC---CCeEeEEECCCCCce
Confidence 553 4567999999999999999999999887 58889987754322222 2223333 569999999999999
Q ss_pred EE-EeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCC
Q 001336 956 LA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL 1015 (1097)
Q Consensus 956 ~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~ 1015 (1097)
|+ +.|++|+|||+.+++++..+. .+|...|++++|||||++||+||.|++|+||+++..
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~-~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFK-QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEET-TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEec-CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99 588999999999999887753 389999999999999999999999999999999754
No 80
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.9e-32 Score=296.89 Aligned_cols=252 Identities=15% Similarity=0.253 Sum_probs=213.1
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecC--CCcEEEEEEeCCCcEEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIKV 454 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~i 454 (1097)
+.+|...|.+++|+|+|++||+|+.|++|+|||+.++. .....++.+|.++|.+++|+++ ++ +|++|+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 67899999999999999999999999999999997542 1223368899999999999864 67 8999999999999
Q ss_pred EECCCCc--eeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCc--eeeecCCCCceEEEEEccC-----
Q 001336 455 WDAVTGT--KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSAD----- 525 (1097)
Q Consensus 455 wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~----- 525 (1097)
||+.+++ .+..+.+|...|.+++|++..++.+|++++.|++|++||++.... ...+..|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 567788999999999997765578999999999999999987532 3456678889999999997
Q ss_pred --------CCEEEEeeeCCCCCceEEEEeCCCCe----eeEEecCCCCcceEEEEEcCCC---CEEEEEeCCCcEEEEEC
Q 001336 526 --------GARLFSCGTNKEGESYLVEWNESEGA----VKRTYHGLGKRSVGVVQFDTTK---NRFLAAGDEFMIKFWDM 590 (1097)
Q Consensus 526 --------~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~ 590 (1097)
+++|++++.|+ .|++||++++. ....+.+|.. .|.+++|+|++ .+|++++.|++|++||+
T Consensus 162 ~~~~~~~~~~~l~sgs~D~----~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADN----LVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp --------CCEEEEEETTS----CEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccCCCCCCcceEEEEcCCC----cEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 57899998654 69999998765 6678888887 89999999985 89999999999999999
Q ss_pred CCCc--e-EEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001336 591 DNVN--L-LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 636 (1097)
Q Consensus 591 ~~~~--~-~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~ 636 (1097)
+++. . ...+..+.+...|.+++|+|++++|++++.||.|++|+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 8753 1 22332234567899999999999999999999999999764
No 81
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.3e-32 Score=308.17 Aligned_cols=286 Identities=17% Similarity=0.268 Sum_probs=241.4
Q ss_pred CeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEE
Q 001336 321 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 400 (1097)
Q Consensus 321 ~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 400 (1097)
.+.+++|++ ..+ ++++.||.|+|||+.+++..... ...|...|.+++|+|++++|++|+
T Consensus 95 ~~~~~~~s~--~~l-~~~~~d~~v~lw~~~~~~~~~~~------------------~~~~~~~v~~v~~s~~~~~l~~~~ 153 (401)
T 4aez_A 95 YLNLLDWSN--LNV-VAVALERNVYVWNADSGSVSALA------------------ETDESTYVASVKWSHDGSFLSVGL 153 (401)
T ss_dssp TCBCEEECT--TSE-EEEEETTEEEEEETTTCCEEEEE------------------ECCTTCCEEEEEECTTSSEEEEEE
T ss_pred eEEEEeecC--CCE-EEEECCCeEEEeeCCCCcEeEee------------------ecCCCCCEEEEEECCCCCEEEEEC
Confidence 355566665 444 67789999999999998865431 234889999999999999999999
Q ss_pred CCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECC-CCceeEEeecCCcCeEEEeec
Q 001336 401 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV-TGTKQYIFEGHESPVYSICPH 479 (1097)
Q Consensus 401 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~ 479 (1097)
.||.|++||+.+++.+. .+.+|...|.+++|+ +. +|++|+.|+.|++||+. .+..+..+.+|...|.+++|+
T Consensus 154 ~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 226 (401)
T 4aez_A 154 GNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR 226 (401)
T ss_dssp TTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc
Confidence 99999999999987665 477999999999994 55 79999999999999998 567788999999999999995
Q ss_pred ccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCC
Q 001336 480 HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 559 (1097)
Q Consensus 480 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 559 (1097)
+ ++.+|++++.|+.|++||+++......+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.+..+..+
T Consensus 227 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~~~~~~~ 303 (401)
T 4aez_A 227 S--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARVNTVDAG 303 (401)
T ss_dssp T--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEEEEEECS
T ss_pred C--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEEEEEeCC
Confidence 5 6689999999999999999998888888888889999999998865555432 123568999999999998888644
Q ss_pred CCcceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 560 GKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 560 ~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
..+.+++|+|+++++++++ .||.|++||+.+++........++...|.+++|+|++.+|++++.||.|++|++.++
T Consensus 304 --~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 304 --SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp --SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred --CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 3799999999999999954 899999999999877666544455788999999999999999999999999999988
Q ss_pred ce
Q 001336 638 IR 639 (1097)
Q Consensus 638 ~~ 639 (1097)
..
T Consensus 382 ~~ 383 (401)
T 4aez_A 382 DH 383 (401)
T ss_dssp --
T ss_pred cc
Confidence 43
No 82
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-33 Score=317.33 Aligned_cols=294 Identities=16% Similarity=0.172 Sum_probs=223.7
Q ss_pred CccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccC
Q 001336 738 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 817 (1097)
Q Consensus 738 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 817 (1097)
+...|.+++|+|++++|++++.|+.|++|++..... + ....+.+ |...|.+++|+|+
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~--------------------~-~~~~~~~--h~~~v~~~~~s~~ 66 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW--------------------K-HARTFSD--HDKIVTCVDWAPK 66 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE--------------------E-ECCCBCC--CSSCEEEEEECTT
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce--------------------E-EEEEEec--CCceEEEEEEeCC
Confidence 567899999999999999999999999997653200 1 1112333 8999999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCc---eeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccce---EEEEecc-c
Q 001336 818 DSYVMSAS-GGKISLFNMMTFK---TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE---VKTKLKG-H 889 (1097)
Q Consensus 818 g~~la~~s-dg~i~iwd~~~~~---~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~---~~~~l~~-h 889 (1097)
+++|++++ |++|++||+.+++ ....+.+|...|.+++|+| ++++|++++.|+.|++||+.+++ ....+.+ |
T Consensus 67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h 145 (377)
T 3dwl_C 67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL 145 (377)
T ss_dssp TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSC
T ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeeccc
Confidence 99999999 9999999999877 6777888999999999999 89999999999999999999887 4677887 9
Q ss_pred ccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccc-------------eeeEeecCCCCCCccCCeEEEEcCCCcEEE
Q 001336 890 QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQA-------------SKFLTIPNGRTASALADTRVQFHLDQTHLL 956 (1097)
Q Consensus 890 ~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~-------------~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 956 (1097)
...|++++|+|++++|++++.|+.|++||+...+... ...+... +|. ..|.+++|+|++++|+
T Consensus 146 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 146 RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG---GWVHAVGFSPSGNALA 221 (377)
T ss_dssp CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS---SSEEEEEECTTSSCEE
T ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC---ceEEEEEECCCCCEEE
Confidence 9999999999999999999999999999996433111 1222223 333 6799999999999999
Q ss_pred E-EeCCeEEEEeCCCcce----eeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCce--eeeeC-------
Q 001336 957 A-VHETQIAIYEAPKLEC----LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRL--RCRIN------- 1022 (1097)
Q Consensus 957 ~-~~d~~v~vwd~~~~~~----~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~--~~~~~------- 1022 (1097)
+ +.|+.|++||+.+++. +..+. +|...|.+++|+|||++|++++.|+.+ +|+...... ...+.
T Consensus 222 ~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 222 YAGHDSSVTIAYPSAPEQPPRALITVK--LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp EEETTTEEC-CEECSTTSCEEECCCEE--CSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred EEeCCCcEEEEECCCCCCcceeeEeec--CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 8 5889999999999987 55665 789999999999999999999877766 666552220 01110
Q ss_pred ------------------------------------CCCcCCCCCCCceeeEEEEEcCCCCC---EEEEEecCCcEEEEe
Q 001336 1023 ------------------------------------PTAYLPTNPSLRVYPLVIAGNPTDPN---QFALGLTDGGVYIIE 1063 (1097)
Q Consensus 1023 ------------------------------------~~~~~~~~h~~~v~~l~i~~~p~~~~---~l~s~~~Dg~v~~W~ 1063 (1097)
....+..+|.+.|.++. +.+.++. .|+||+.||.|++||
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~--~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLR--PYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEE--EEEEETTEEEEEEEEETTSEEEEEC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEe--ccCCCCCceEEEEeecCCCcEEEec
Confidence 00112234999998874 4443344 799999999999998
Q ss_pred c
Q 001336 1064 P 1064 (1097)
Q Consensus 1064 ~ 1064 (1097)
+
T Consensus 377 l 377 (377)
T 3dwl_C 377 L 377 (377)
T ss_dssp C
T ss_pred C
Confidence 6
No 83
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.5e-34 Score=323.20 Aligned_cols=286 Identities=14% Similarity=0.067 Sum_probs=223.1
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCC--ceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSR--ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 395 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 395 (1097)
+.+.|++++|+|+|++ |++|+.||.|+|||+.++ +.+. .+.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~~-l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTE-FVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSSE-EECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCCE-EEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence 5679999999999994 589999999999999987 3332 26789999999999999999
Q ss_pred EEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCc---eeEEeec-CCc
Q 001336 396 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT---KQYIFEG-HES 471 (1097)
Q Consensus 396 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~---~~~~~~~-h~~ 471 (1097)
|++|+.|+.|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998762333345778999999999999999 79999999999999999887 4778888 999
Q ss_pred CeEEEeecccCCccEEEEEcCCCeEEEEEcCCC------------------CceeeecCCCCceEEEEEccCCCEEEEee
Q 001336 472 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNL------------------GSRVDYDAPGHSSTMMAYSADGARLFSCG 533 (1097)
Q Consensus 472 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 533 (1097)
.|.+++|+ +++.+|++++.|+.|++||++.. .....+ .+...|.+++|+|++++|++++
T Consensus 148 ~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWH--PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CEEEEEEC--TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CeEEEEEc--CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 99999995 46689999999999999998532 222333 6677899999999999999998
Q ss_pred eCCCCCceEEEEeCCCCee----eEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------------
Q 001336 534 TNKEGESYLVEWNESEGAV----KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN--------------- 594 (1097)
Q Consensus 534 ~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------- 594 (1097)
.+ +.|++||+.+++. +..+.+|.. .+.+++|+|++++|++++.++.+ +|+.....
T Consensus 225 ~d----~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 225 HD----SSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp TT----TEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred CC----CcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 64 4799999999877 778888876 89999999999999888766665 66654211
Q ss_pred ------------------------eEEEEec-----------CCCCCCcceEEEcCC-CC---EEEEEECCCcEEEEEc
Q 001336 595 ------------------------LLASIDA-----------DGGLQASPCIRFNKE-GI---LLAVSTNDNGIKILAN 634 (1097)
Q Consensus 595 ------------------------~~~~~~~-----------~~~~~~v~~v~~s~~-~~---~l~s~~~dg~i~iw~~ 634 (1097)
....... ..|...|+++++.+. +. .|++++.||.|++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000000 115678999997663 33 6999999999999984
No 84
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.6e-32 Score=306.95 Aligned_cols=250 Identities=16% Similarity=0.230 Sum_probs=212.3
Q ss_pred ccCCCCCCeEEEEEccC----CCEEEEEECCCEEEEEEccCCeeeeeeeeee--cccCcEEEEEEecC----CCcEEEEE
Q 001336 376 LSSDYTASVNRVMWSPD----GTLFGVAYSKHIVHLYTYHGGDELRNHLEIE--AHVGSVNDLAFSYP----NKQLSVVT 445 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd----~~~las~~~dg~i~iwd~~~~~~~~~~~~l~--~h~~~V~~l~~s~d----~~~~~l~s 445 (1097)
+..+|...|++++|+|+ ...+++++.++.|++||+.+++.+....... .|...|.+++|+|+ +. +|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 35689999999999984 5567777777799999999887665443333 36788999999999 55 8999
Q ss_pred EeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeee---cCCCCceEEEEE
Q 001336 446 CGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY---DAPGHSSTMMAY 522 (1097)
Q Consensus 446 ~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~ 522 (1097)
|+.|+.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+ ..+...|.+++|
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 999999999999999999999999999999999651 5589999999999999999988877776 577889999999
Q ss_pred ccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecC----------------------------CCCcceEEEEEcCCCC
Q 001336 523 SADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG----------------------------LGKRSVGVVQFDTTKN 574 (1097)
Q Consensus 523 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~----------------------------~~~~~v~~~~~~~~~~ 574 (1097)
+|++++|++++.++ .|++||+++++....+.. |.. .|.+++|+ ++
T Consensus 170 ~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~--~~ 242 (366)
T 3k26_A 170 DLLGEKIMSCGMDH----SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN-YVDCVRWL--GD 242 (366)
T ss_dssp CTTSSEEEEEETTS----CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS-CCCEEEEE--TT
T ss_pred CCCCCEEEEecCCC----CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc-eEEEEEEc--CC
Confidence 99999999998654 699999998765543332 555 89999998 67
Q ss_pred EEEEEeCCCcEEEEECCCCce--------------EEEEecCCCCCCcceEEEcCC--CCEEEEEECCCcEEEEEcCCC
Q 001336 575 RFLAAGDEFMIKFWDMDNVNL--------------LASIDADGGLQASPCIRFNKE--GILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 575 ~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~s~~--~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
++++++.|+.|++||+.+++. +..+..| ...|.+++|+|+ +.+|++++.||.|++||+.++
T Consensus 243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred EEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 999999999999999987754 6666655 668999999999 999999999999999999876
No 85
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.2e-30 Score=288.95 Aligned_cols=282 Identities=14% Similarity=0.252 Sum_probs=235.8
Q ss_pred eeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEEC
Q 001336 322 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS 401 (1097)
Q Consensus 322 V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~ 401 (1097)
.++|+||+++ +||+|. |++|+|||+.+++.+...+ +.+|...|++++|+|++++||+|+.
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~-----------------~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCeEEEEEECCCCCEEEEEEC
Confidence 4689999987 567765 8999999999998765321 4678999999999999999999999
Q ss_pred CCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEeecCCcCeEEEeecc
Q 001336 402 KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSICPHH 480 (1097)
Q Consensus 402 dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~ 480 (1097)
||+|++||+.+++.+. .+.+|...+.++.+. +. ++++++.++.+++|+...+ ..+..+.+|...+..+.+
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~~--~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 158 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW-- 158 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE--
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeecC--CC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE--
Confidence 9999999999998765 478899988876654 56 7999999999999998866 456788999999999988
Q ss_pred cCCccEEEEEcCCCeEEEEEcCCCCce----eeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEe
Q 001336 481 KENIQFIFSTATDGKIKAWLYDNLGSR----VDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY 556 (1097)
Q Consensus 481 ~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 556 (1097)
.+++.++++++.|+.|++||+++++.. .....+...|.++.++|++..++.... +..+..|++||..........
T Consensus 159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred cCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence 456689999999999999999876532 334456668999999998776554322 234668999999988877666
Q ss_pred cCCCCcceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001336 557 HGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 634 (1097)
Q Consensus 557 ~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~ 634 (1097)
.... .+..+.|+++++.+++++ .|+.|++||+.+++++..+.+| ...|++++|+|++.+|++|+.||+|+|||+
T Consensus 238 ~~~~--~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH--~~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 238 DAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp ECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ccee--eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 5443 688999999999988765 7999999999999999999866 779999999999999999999999999998
Q ss_pred CCC
Q 001336 635 ADG 637 (1097)
Q Consensus 635 ~~~ 637 (1097)
.+.
T Consensus 314 ~~~ 316 (318)
T 4ggc_A 314 FEL 316 (318)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 86
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=9.3e-32 Score=303.28 Aligned_cols=252 Identities=14% Similarity=0.197 Sum_probs=208.2
Q ss_pred ccCCCCCCeEEEEEccCCCEEE-EEEC---CCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecC---CCcEEEEEEeC
Q 001336 376 LSSDYTASVNRVMWSPDGTLFG-VAYS---KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP---NKQLSVVTCGE 448 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd~~~la-s~~~---dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d---~~~~~l~s~s~ 448 (1097)
++.+|...|.+++|+|++..++ +|+. ||.|+|||+.+++.... ...+|...|.+++|+|+ +. +|++|+.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~~ 88 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGDF 88 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEET
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEecC
Confidence 3678999999999999996554 5555 99999999998875432 23379999999999999 57 7999999
Q ss_pred CCcEEEEECCCCc-eeEEeecCCcCeEEEeecc----cCCccEEEEEcCCCeEEEEEcCCCC-ceeeecCCCC----ceE
Q 001336 449 DRVIKVWDAVTGT-KQYIFEGHESPVYSICPHH----KENIQFIFSTATDGKIKAWLYDNLG-SRVDYDAPGH----SST 518 (1097)
Q Consensus 449 d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~ 518 (1097)
|+.|++||+.+++ .+..+.+|...|.+++|.+ ++++.+|++++.||.|++||++... ....+..+.. .+.
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 9999999999988 8899999999999997643 5677899999999999999999876 4555544333 788
Q ss_pred EEE----EccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcC---CCCEEEEEeCCCcEEEEECC
Q 001336 519 MMA----YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT---TKNRFLAAGDEFMIKFWDMD 591 (1097)
Q Consensus 519 ~~~----~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~ 591 (1097)
+++ |+|+++++++++.+ +.|++||+++++.... ..+.. .+.+++|+| +++++++++.||.|++||+.
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~-~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYDN----GDIKLFDLRNMALRWE-TNIKN-GVCSLEFDRKDISMNKLVATSLEGKFHVFDMR 242 (357)
T ss_dssp EEEEECCCC-CCCEEEEEETT----SEEEEEETTTTEEEEE-EECSS-CEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred EEEEEeccCCCCCEEEEEccC----CeEEEEECccCceeee-cCCCC-ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence 888 78999999999764 4799999999987554 44444 899999999 89999999999999999998
Q ss_pred CCceEEEEe---cCCCCCCcceEEEcCCCC-EEEEEECCCcEEEEEcCCC
Q 001336 592 NVNLLASID---ADGGLQASPCIRFNKEGI-LLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 592 ~~~~~~~~~---~~~~~~~v~~v~~s~~~~-~l~s~~~dg~i~iw~~~~~ 637 (1097)
+++.+..+. ..++...|.+++|+|++. ++++++.||.|++|++.++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 243 TQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred CCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 876654443 113477899999999998 8999999999999998766
No 87
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-31 Score=289.19 Aligned_cols=295 Identities=12% Similarity=0.087 Sum_probs=243.0
Q ss_pred CceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCc
Q 001336 593 VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSAN 672 (1097)
Q Consensus 593 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1097)
.++...+.+| ...|.+++| +++.+|++++.||.|++|++.++ .....+.
T Consensus 8 ~~~~~~l~~h--~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~-~~~~~~~--------------------------- 56 (313)
T 3odt_A 8 YQLSATLKGH--DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ-WLGTVVY--------------------------- 56 (313)
T ss_dssp CEEEEEECCC--SSCEEEEEE-EETTEEEEEETTSEEEEEEESSS-EEEEEEE---------------------------
T ss_pred HHHHHHhhCC--CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC-EEEEEee---------------------------
Confidence 3566777755 779999999 99999999999999999999766 3332221
Q ss_pred cccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCc
Q 001336 673 ANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGL 752 (1097)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 752 (1097)
.|...|.+++|+|+++
T Consensus 57 ----------------------------------------------------------------~~~~~v~~~~~~~~~~ 72 (313)
T 3odt_A 57 ----------------------------------------------------------------TGQGFLNSVCYDSEKE 72 (313)
T ss_dssp ----------------------------------------------------------------ECSSCEEEEEEETTTT
T ss_pred ----------------------------------------------------------------cCCccEEEEEECCCCC
Confidence 1567899999999999
Q ss_pred eeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEE
Q 001336 753 AILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISL 831 (1097)
Q Consensus 753 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~i 831 (1097)
.+++++.||.+++|++.. ...+..... +.+ |...|.+++| +++++++++ |+.|++
T Consensus 73 ~l~~~~~dg~i~~~~~~~-------------------~~~~~~~~~-~~~--~~~~i~~~~~--~~~~l~~~~~d~~i~~ 128 (313)
T 3odt_A 73 LLLFGGKDTMINGVPLFA-------------------TSGEDPLYT-LIG--HQGNVCSLSF--QDGVVISGSWDKTAKV 128 (313)
T ss_dssp EEEEEETTSCEEEEETTC-------------------CTTSCC-CE-ECC--CSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred EEEEecCCCeEEEEEeee-------------------cCCCCcccc-hhh--cccCEEEEEe--cCCEEEEEeCCCCEEE
Confidence 999999999999998653 222222221 333 8999999999 677999998 999999
Q ss_pred EEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecc-cccCeEEEEEecCCCEEEEEeC
Q 001336 832 FNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG-HQKRITGLAFSNTLNVLVSSGA 910 (1097)
Q Consensus 832 wd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~-h~~~V~~l~~s~dg~~l~s~~~ 910 (1097)
|| .++....+..|...+.+++|+|.++.++++++.||.|++|| .++....+.. |...|.+++|+|++. +++++.
T Consensus 129 ~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~ 203 (313)
T 3odt_A 129 WK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN 203 (313)
T ss_dssp EE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET
T ss_pred Ec--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC
Confidence 99 77888889999999999999886788999999999999999 5566777777 999999999999998 999999
Q ss_pred CCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeeeeeccCCCCCEEEEE
Q 001336 911 DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHAT 990 (1097)
Q Consensus 911 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~ 990 (1097)
|+.|++||+.+++. +....++. ..+.+++|+|++.+++.+.|+.|++||+.+++.+..+. .|...|.+++
T Consensus 204 dg~i~i~d~~~~~~-----~~~~~~~~---~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~i~~~~ 273 (313)
T 3odt_A 204 DGLIKLVDMHTGDV-----LRTYEGHE---SFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVIT--LPAISIWSVD 273 (313)
T ss_dssp TSEEEEEETTTCCE-----EEEEECCS---SCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEE--CSSSCEEEEE
T ss_pred CCeEEEEECCchhh-----hhhhhcCC---ceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEe--ccCceEEEEE
Confidence 99999999998652 22333333 57999999999965555789999999999999988887 7788999999
Q ss_pred EecCCCEEEEEecCCeEEEEeCCCCceeeeeC
Q 001336 991 YSCDSQSIYVAFEEGSVGVLTASTLRLRCRIN 1022 (1097)
Q Consensus 991 ~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~ 1022 (1097)
|+|+++ +++++.||.|++|++.+++......
T Consensus 274 ~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 274 CMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp ECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred EccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 999998 5679999999999999987765444
No 88
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-32 Score=309.17 Aligned_cols=315 Identities=11% Similarity=0.047 Sum_probs=241.1
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
-...|.+|+|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg---- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE---- 64 (588)
T ss_dssp CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC----
T ss_pred hhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC----
Confidence 357899999999999 569999999999 6444432 46899999999999999
Q ss_pred EEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCc-----C
Q 001336 398 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES-----P 472 (1097)
Q Consensus 398 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~-----~ 472 (1097)
.++.+.+|+.+....+ .+ +|...|.+++|||||+ +|++++.||.|++||.++ ++..+. |.. .
T Consensus 65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~s 131 (588)
T 2j04_A 65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRT 131 (588)
T ss_dssp ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTC
T ss_pred ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccccc
Confidence 4555555544322211 12 5688999999999999 799999999999999544 777777 765 4
Q ss_pred eEEEeecccCCccEEEEEcCCCeEEEEEcCCCCc-------eeee----cCCCCceEEEEEccCCCEEEEeeeCCCCCce
Q 001336 473 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-------RVDY----DAPGHSSTMMAYSADGARLFSCGTNKEGESY 541 (1097)
Q Consensus 473 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~----~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 541 (1097)
|.+++| ++||++|++|+.||+|++||+..+.. ...+ ..|...|.+++|+|+| +++++. ++.
T Consensus 132 v~svaf--SPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~t 203 (588)
T 2j04_A 132 YHCFEW--NPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNS 203 (588)
T ss_dssp EEEEEE--CSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCC
T ss_pred EEEEEE--cCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCe
Confidence 999999 56779999999999999999998653 2333 4566799999999999 666665 446
Q ss_pred EEEEeCCCCee---eEEec-CCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEE--cC
Q 001336 542 LVEWNESEGAV---KRTYH-GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF--NK 615 (1097)
Q Consensus 542 i~~wd~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~--s~ 615 (1097)
+++||+.++.. .+++. +|.. .|.+++|+ ++.+++++ ++.|++||+.+++......+ |...|..++| +|
T Consensus 204 VrlWd~~~~~~~~~~~tL~~~h~~-~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~~~s~ 277 (588)
T 2j04_A 204 VFSMTVSASSHQPVSRMIQNASRR-KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPLNHEK 277 (588)
T ss_dssp EEEECCCSSSSCCCEEEEECCCSS-CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEETTCS
T ss_pred EEEEECCCCccccceeeecccccC-cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEeeeCC
Confidence 99999988773 35664 5554 89999999 58899887 69999999998877444433 4778999999 99
Q ss_pred CCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCC
Q 001336 616 EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND 695 (1097)
Q Consensus 616 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1097)
++..+++++.||+ ++|.... +. ++|
T Consensus 278 d~~~La~a~edG~-klw~~d~----~~--------------------------------~sp------------------ 302 (588)
T 2j04_A 278 ESTILLMSNKTSY-KVLLEDE----LH--------------------------------VTA------------------ 302 (588)
T ss_dssp SCEEEEECSSCEE-EEEESSS----EE--------------------------------EEC------------------
T ss_pred CCCEEEEEcCCCC-EEEeecc----EE--------------------------------ECC------------------
Confidence 9999999999999 9998762 10 111
Q ss_pred CCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeecc
Q 001336 696 SRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS 759 (1097)
Q Consensus 696 ~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 759 (1097)
++. +.+..|+++++|+..... ... -.+...|.+++|+|||+.+++++.
T Consensus 303 -----d~~--l~a~~d~~v~lW~~~g~~----l~~-----~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 303 -----DNI--IAPYLEKKFKKWSTIWNE----FNN-----YETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp -----CCS--SHHHHHHHHHHTTTTTTS----SSS-----SCCEEEEEEEEECTTSSEEEEEEE
T ss_pred -----Cce--EEEEcCCEEEEEECCCCc----eee-----eccceEEEEEEECCCCCEEEEEEe
Confidence 122 233348999999975322 111 113567999999999999998875
No 89
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-33 Score=314.10 Aligned_cols=320 Identities=10% Similarity=0.063 Sum_probs=249.0
Q ss_pred cCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeC
Q 001336 468 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 547 (1097)
Q Consensus 468 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 547 (1097)
.....|.+++| ++||+++++++.|++|+ |...... +..|...|.+++|+|+| . +..|++
T Consensus 13 ~~~~~v~sv~~--SpDG~~iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg-------~-------~~~~~~ 71 (588)
T 2j04_A 13 EFEDWKNNLTW--ARDGTLYLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLE-------F-------ENKLDF 71 (588)
T ss_dssp CCSSSSCCEEE--CTTSCEEEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCC-------C-------CCTTTT
T ss_pred HhhccEEEEEE--CCCCCEEEEEcCCceee--cccccce---ecCCCccEEEEEECCCC-------C-------cceEEE
Confidence 34578999998 66789999999999999 6554433 35777899999999999 1 233444
Q ss_pred CCCeeeEEec-CCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC---CCCcceEEEcCCCCEEEEE
Q 001336 548 SEGAVKRTYH-GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG---LQASPCIRFNKEGILLAVS 623 (1097)
Q Consensus 548 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~v~~s~~~~~l~s~ 623 (1097)
.+++....+. .+ ...|.+++|+|+|..|++++.||.|++||... ++..+. |.. ...+.+++|||||++||+|
T Consensus 72 ~~~~~~~~~~~~~-~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsg 147 (588)
T 2j04_A 72 ELAQQNGLLNSQP-VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVG 147 (588)
T ss_dssp SCCCSSCSSTTSC-SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEE
T ss_pred EeCCCceEeecCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEE
Confidence 4444333333 33 45899999999999999999999999999654 555555 321 2358999999999999999
Q ss_pred ECCCcEEEEEcCCCce------EEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCC
Q 001336 624 TNDNGIKILANADGIR------LLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSR 697 (1097)
Q Consensus 624 ~~dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1097)
+.||+|+||++.++.. .+..+..
T Consensus 148 s~DGtVkIWd~~~~~l~~~~~i~l~ti~~--------------------------------------------------- 176 (588)
T 2j04_A 148 NEDGELQFFSIRKNSENTPEFYFESSIRL--------------------------------------------------- 176 (588)
T ss_dssp ETTSEEEEEECCCCTTTCCCCEEEEEEEC---------------------------------------------------
T ss_pred cCCCEEEEEECCCCccccccceeeeeeec---------------------------------------------------
Confidence 9999999999876510 0000000
Q ss_pred CccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccC
Q 001336 698 NFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTG 777 (1097)
Q Consensus 698 ~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~ 777 (1097)
T Consensus 177 -------------------------------------------------------------------------------- 176 (588)
T 2j04_A 177 -------------------------------------------------------------------------------- 176 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCce---eEEe-CCCCCCeEE
Q 001336 778 KATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT---MTTF-MPPPPAATF 852 (1097)
Q Consensus 778 ~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~---~~~~-~~~~~~i~~ 852 (1097)
... +|...|.+++|+||| +++++ |++|++||+.++.. .+++ .+|...|.+
T Consensus 177 ---------------------~~~--gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s 231 (588)
T 2j04_A 177 ---------------------SDA--GSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD 231 (588)
T ss_dssp ---------------------SCT--TCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred ---------------------ccc--cccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence 011 277889999999999 45555 99999999988774 3556 478889999
Q ss_pred EEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEE--ecCCCEEEEEeCCCcEEEEEcCCCcccceeeE
Q 001336 853 LAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAF--SNTLNVLVSSGADSQLCVWSTDGWEKQASKFL 930 (1097)
Q Consensus 853 l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~--s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~ 930 (1097)
++|+ +++||+++ +++|++||+.+++......+|.+.|..++| +||+..|+++++||+ ++|..+.
T Consensus 232 vaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~--------- 297 (588)
T 2j04_A 232 LKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE--------- 297 (588)
T ss_dssp EEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS---------
T ss_pred EEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc---------
Confidence 9999 37899887 699999999988874444489999999999 999999999999999 9999772
Q ss_pred eecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEe
Q 001336 931 TIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAF 1002 (1097)
Q Consensus 931 ~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s 1002 (1097)
++|+||+..++.. |+++++|+...+. +..+. + ...|.+++|||||+.+|+++
T Consensus 298 ---------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~~--~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 298 ---------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNNYE--T-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp ---------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSSSC--C-EEEEEEEEECTTSSEEEEEE
T ss_pred ---------------EEECCCceEEEEc-CCEEEEEECCCCc-eeeec--c-ceEEEEEEECCCCCEEEEEE
Confidence 6699999887775 9999999986554 33332 3 67799999999999999887
No 90
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2e-31 Score=306.74 Aligned_cols=365 Identities=13% Similarity=0.163 Sum_probs=253.4
Q ss_pred CCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeec-------------CCCC
Q 001336 449 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-------------APGH 515 (1097)
Q Consensus 449 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~~~~ 515 (1097)
++.+++|++..++....+.+|.+.|.+++|++. ++++|++++.||.|++||+.+......+. .+..
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPV-EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTT-TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecC-CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 456788988888889999999999999999541 56899999999999999999876655443 4777
Q ss_pred ceEEEEEcc-CCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCC---CEEEEEeCCCcEEEEECC
Q 001336 516 SSTMMAYSA-DGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK---NRFLAAGDEFMIKFWDMD 591 (1097)
Q Consensus 516 ~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~ 591 (1097)
.|.+++|+| ++.++++++.+ +.|++||+.+++....+... . .+.++.+++.+ .++++++.||.|++||+.
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFD----KTLKVWDTNTLQTADVFNFE-E-TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETT----SEEEEEETTTTEEEEEEECS-S-CEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred cEEEEEEccCCCcEEEEEeCC----CeEEEeeCCCCccceeccCC-C-ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 999999999 77789988754 47999999999988888743 2 78889998854 599999999999999999
Q ss_pred CCceEEEEecCCCCCCcceEEEcCCCC-EEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCccccccc
Q 001336 592 NVNLLASIDADGGLQASPCIRFNKEGI-LLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGS 670 (1097)
Q Consensus 592 ~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1097)
+++.+..+..| ...|.+++|+|++. ++++++.||.|++||+.++......+..+.....
T Consensus 175 ~~~~~~~~~~~--~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------------------ 234 (408)
T 4a11_B 175 SGSCSHILQGH--RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS------------------ 234 (408)
T ss_dssp SSCCCEEECCC--CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC------------------
T ss_pred CcceeeeecCC--CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc------------------
Confidence 99999988865 67899999999988 6999999999999999887444444332211100
Q ss_pred CccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccC
Q 001336 671 ANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS 750 (1097)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 750 (1097)
.........|...|.+++|+|+
T Consensus 235 ----------------------------------------------------------~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 235 ----------------------------------------------------------QAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp ----------------------------------------------------------CCTTTSSCSCSSCEEEEEECTT
T ss_pred ----------------------------------------------------------eeeccccccccCceeEEEEcCC
Confidence 0000111247889999999999
Q ss_pred CceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEE
Q 001336 751 GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKIS 830 (1097)
Q Consensus 751 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sdg~i~ 830 (1097)
+++|++++.||.+++|++........ ..+.... . ..............+.+++++.++.|+
T Consensus 257 ~~~l~~~~~dg~i~vwd~~~~~~~~~--------------~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~i~ 317 (408)
T 4a11_B 257 GLHLLTVGTDNRMRLWNSSNGENTLV--------------NYGKVCN----N-SKKGLKFTVSCGCSSEFVFVPYGSTIA 317 (408)
T ss_dssp SSEEEEEETTSCEEEEETTTCCBCCC--------------CCCCCCC----C-CSSCCCCEECCSSSSCEEEEEETTEEE
T ss_pred CCEEEEecCCCeEEEEECCCCcccee--------------ccccccc----c-ccccceeEEecCCCceEEEEecCCEEE
Confidence 99999999999999998875321100 0000000 0 011222233333445555555699999
Q ss_pred EEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEec-CCCEEEEEe
Q 001336 831 LFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSN-TLNVLVSSG 909 (1097)
Q Consensus 831 iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~-dg~~l~s~~ 909 (1097)
+||+.+++++..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+... ..+.+ +...+.+.+
T Consensus 318 v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 393 (408)
T 4a11_B 318 VYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSD 393 (408)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC-------------------------------
T ss_pred EEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeecccC
Confidence 999999999999999999999999999 8999999999999999999998877655443322 22333 334556677
Q ss_pred CCCcEEEEEcCC
Q 001336 910 ADSQLCVWSTDG 921 (1097)
Q Consensus 910 ~Dg~i~iwd~~~ 921 (1097)
.|+.+++|+...
T Consensus 394 ~~~~~~~W~~~~ 405 (408)
T 4a11_B 394 EEGGTSAWSHPQ 405 (408)
T ss_dssp ------------
T ss_pred ccCceeecCCcc
Confidence 899999998654
No 91
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.6e-31 Score=290.33 Aligned_cols=254 Identities=10% Similarity=0.092 Sum_probs=208.8
Q ss_pred CCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCC--CceeEEeCCCCCCeEEEEEeCC-CCCEEEEEECCCcEEEEEcccc
Q 001336 805 PEDAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKTMTTFMPPPPAATFLAFHPQ-DNNIIAIGMEDSSIQIYNVRVD 880 (1097)
Q Consensus 805 h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~--~~~~~~~~~~~~~i~~l~~sp~-~~~~la~g~~dg~v~vwd~~~~ 880 (1097)
|...|.+++|+|+|++||+++ |++|+|||+.+ .+++.++.+|...|.+++|+++ ++++||+|+.|++|++||+.++
T Consensus 8 h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~ 87 (297)
T 2pm7_B 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENG 87 (297)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS
T ss_pred CcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC
Confidence 999999999999999999999 99999999974 4678899999999999999862 3789999999999999999887
Q ss_pred e--EEEEecccccCeEEEEEecC--CCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCC-----
Q 001336 881 E--VKTKLKGHQKRITGLAFSNT--LNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD----- 951 (1097)
Q Consensus 881 ~--~~~~l~~h~~~V~~l~~s~d--g~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d----- 951 (1097)
+ .+..+.+|...|.+++|+|+ +.+|++++.|++|++||+..+..... ....+|. ..|.+++|+|+
T Consensus 88 ~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~---~~~~~h~---~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 88 RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP---IIIDAHA---IGVNSASWAPATIEED 161 (297)
T ss_dssp CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC---EEEECCS---SCEEEEEECCCC----
T ss_pred ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee---eeeeccc---CccceEeecCCccccc
Confidence 4 56778899999999999998 89999999999999999987532211 2223343 56999999997
Q ss_pred --------CcEEEE-EeCCeEEEEeCCCcc----eeeeeeccCCCCCEEEEEEecCC---CEEEEEecCCeEEEEeCCCC
Q 001336 952 --------QTHLLA-VHETQIAIYEAPKLE----CLKQFVPREASGPITHATYSCDS---QSIYVAFEEGSVGVLTASTL 1015 (1097)
Q Consensus 952 --------g~~l~~-~~d~~v~vwd~~~~~----~~~~~~~~~h~~~v~~v~~s~dg---~~l~s~s~Dg~v~vwd~~~~ 1015 (1097)
+++|++ +.|+.|++||+.+++ ....+ .+|...|.+++|+|++ .+|++++.|++|+|||+.+.
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l--~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe--cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 468888 589999999998766 33344 4899999999999995 89999999999999999875
Q ss_pred ce--eeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCCCcccCCC
Q 001336 1016 RL--RCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTS 1074 (1097)
Q Consensus 1016 ~~--~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~~~~~~~~ 1074 (1097)
.. ...... ..+|.+.|+.+ +|+| ++.+|++++.||+|++|+... ++.|...
T Consensus 240 ~~~~~~~~~~----~~~~~~~v~~~--~~s~-~g~~las~~~D~~v~lw~~~~-~g~w~~~ 292 (297)
T 2pm7_B 240 QGPWKKTLLK----EEKFPDVLWRA--SWSL-SGNVLALSGGDNKVTLWKENL-EGKWEPA 292 (297)
T ss_dssp TSCCEEEESS----SSCCSSCEEEE--EECS-SSCCEEEEETTSCEEEEEECT-TSCEEEC
T ss_pred CCccceeeee----cccCCCcEEEE--EECC-CCCEEEEEcCCCcEEEEEECC-CCcEEec
Confidence 32 111111 12567778766 8999 789999999999999999874 4567643
No 92
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.8e-31 Score=309.67 Aligned_cols=296 Identities=13% Similarity=0.209 Sum_probs=231.6
Q ss_pred eecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeee---eeeeEeeccccCccccccccCCCC-----------
Q 001336 316 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAV---KSFKVWELGACSMPLQASLSSDYT----------- 381 (1097)
Q Consensus 316 ~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~----------- 381 (1097)
+.+.+.|++++|+|+|++ ||+|+.||.|+|||+.+++.... ..++ ....+.+|.
T Consensus 25 ~~~~~~V~~v~~s~~g~~-la~g~~dg~v~iw~~~~~~~~~~~~~~~~~-----------~~~~~~~h~~~~~~~~~~~~ 92 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGEL-LATGDKGGRVVIFQQEQENKIQSHSRGEYN-----------VYSTFQSHEPEFDYLKSLEI 92 (447)
T ss_dssp CCGGGSEEEEEECSSSSE-EEEEETTSEEEEEEECC-----CCCCCCEE-----------EEEEEECCCCEEEGGGTEEE
T ss_pred ccccCcEEEEEECCCCCE-EEEEcCCCeEEEEEecCCCCCCccccccee-----------Eecccccccccccccccccc
Confidence 456789999999999995 58999999999999998763110 0000 011256787
Q ss_pred -CCeEEEEEccCC--CEEEEEECCCEEEEEEccCCeeee------------------------------------eeee-
Q 001336 382 -ASVNRVMWSPDG--TLFGVAYSKHIVHLYTYHGGDELR------------------------------------NHLE- 421 (1097)
Q Consensus 382 -~~V~~v~~spd~--~~las~~~dg~i~iwd~~~~~~~~------------------------------------~~~~- 421 (1097)
..|++++|+|++ .+|++++.|++|++||+.+++... ....
T Consensus 93 ~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
T 3dw8_B 93 EEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172 (447)
T ss_dssp CCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred cCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence 889999999998 899999999999999998754321 0011
Q ss_pred eecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCC-CceeE-------EeecCCcCeEEEeecccCCc-cEEEEEcC
Q 001336 422 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT-GTKQY-------IFEGHESPVYSICPHHKENI-QFIFSTAT 492 (1097)
Q Consensus 422 l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~-~~~~~-------~~~~h~~~v~~~~~~~~~~~-~~l~s~~~ 492 (1097)
..+|...|.+++|+|+++ +|++| .|+.|++||+.+ ++.+. .+.+|...|.+++|+ +++ .+|++++.
T Consensus 173 ~~~h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~s~~~ 247 (447)
T 3dw8_B 173 ANAHTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH--PNSCNTFVYSSS 247 (447)
T ss_dssp CSCCSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC--SSCTTEEEEEET
T ss_pred ccCCCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC--CCCCcEEEEEeC
Confidence 368999999999999999 78888 799999999984 44444 256899999999995 454 79999999
Q ss_pred CCeEEEEEcCCCCc----eeeecCCCC------------ceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCC-CeeeEE
Q 001336 493 DGKIKAWLYDNLGS----RVDYDAPGH------------SSTMMAYSADGARLFSCGTNKEGESYLVEWNESE-GAVKRT 555 (1097)
Q Consensus 493 dg~i~iwd~~~~~~----~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~ 555 (1097)
||.|++||+++... ...+..+.. .|.+++|+|++++|++++. +.|++||+++ ++.+..
T Consensus 248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----~~v~iwd~~~~~~~~~~ 322 (447)
T 3dw8_B 248 KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-----LSVKVWDLNMENRPVET 322 (447)
T ss_dssp TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-----SEEEEEETTCCSSCSCC
T ss_pred CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-----CeEEEEeCCCCccccce
Confidence 99999999998776 566666664 8999999999999998864 4799999997 888888
Q ss_pred ecCCCCc--------------ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-------------------
Q 001336 556 YHGLGKR--------------SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD------------------- 602 (1097)
Q Consensus 556 ~~~~~~~--------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------- 602 (1097)
+.+|... .+..++|+|++++|++++.||.|++||+.+++.+......
T Consensus 323 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (447)
T 3dw8_B 323 YQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGK 402 (447)
T ss_dssp EESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSC
T ss_pred eeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCC
Confidence 8877520 0234899999999999999999999999998876422110
Q ss_pred -----------CCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001336 603 -----------GGLQASPCIRFNKEGILLAVSTNDNGIKILAN 634 (1097)
Q Consensus 603 -----------~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~ 634 (1097)
.....|..++|+|++.+||+++.++ +++|..
T Consensus 403 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 403 RKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 2234678899999999999998875 778864
No 93
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.5e-30 Score=300.10 Aligned_cols=294 Identities=18% Similarity=0.259 Sum_probs=241.1
Q ss_pred EeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccc-cCCCCCCCCC
Q 001336 730 SLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTN-DISDTNPEDA 808 (1097)
Q Consensus 730 ~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~h~~~ 808 (1097)
.+..|.......++.++|++++ .|++ +.|++|+|||.. +|+.... .+. +|...
T Consensus 96 ~l~ap~~~~d~y~~~l~wS~~n-~lAv-gld~tV~lWd~~----------------------tg~~~~~~~~~--~~~~~ 149 (420)
T 4gga_A 96 ILDAPEIRNDYYLNLVDWSSGN-VLAV-ALDNSVYLWSAS----------------------SGDILQLLQME--QPGEY 149 (420)
T ss_dssp EEECTTCCCCTTCBCEEECTTS-EEEE-EETTEEEEEETT----------------------TCCEEEEEECC--STTCC
T ss_pred EEECCCCcccccceeEEECCCC-EEEE-EeCCEEEEEECC----------------------CCCEEEEEEec--CCCCc
Confidence 3344444445667889999764 4554 458999999654 4443221 222 38889
Q ss_pred eeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccc-eEEEEe
Q 001336 809 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD-EVKTKL 886 (1097)
Q Consensus 809 v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~-~~~~~l 886 (1097)
|++++|+|||++|++|+ ||+|+|||+.+++++..+.+|...+.+++++ +.+|++|+.|+.+++||.... ..+..+
T Consensus 150 V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~ 226 (420)
T 4gga_A 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATL 226 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEe
Confidence 99999999999999999 9999999999999999999999999998885 479999999999999998864 567788
Q ss_pred cccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcE-EEEE---eCCe
Q 001336 887 KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTH-LLAV---HETQ 962 (1097)
Q Consensus 887 ~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~-l~~~---~d~~ 962 (1097)
.+|...+..+.|+|++.++++++.|+.|++|+...++..... +.....+. ..|.+++|+|++.. ++++ .|+.
T Consensus 227 ~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~-~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~ 302 (420)
T 4gga_A 227 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP-LQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRH 302 (420)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC-SEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCE
T ss_pred cccccceeeeeecCCCCeeeeeeccccceEEeecccccccee-eeeecccC---CceeeeeeCCCcccEEEEEeecCCCE
Confidence 999999999999999999999999999999999886643322 22222333 57999999997654 4442 5899
Q ss_pred EEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEe--cCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEE
Q 001336 963 IAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAF--EEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVI 1040 (1097)
Q Consensus 963 v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s--~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i 1040 (1097)
|++||+.++++...+. +...+.++.|+++++.|++++ .|+.|+|||+.+++.+..+. ||.+.|+++
T Consensus 303 I~iwd~~t~~~~~~~~---~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~-------gH~~~V~~l-- 370 (420)
T 4gga_A 303 IRIWNVCSGACLSAVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GHTSRVLSL-- 370 (420)
T ss_dssp EEEEETTTTEEEEEEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CCSSCEEEE--
T ss_pred EEEEeCCccccceeec---cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc-------CCCCCEEEE--
Confidence 9999999999988876 356899999999999998765 79999999999999988876 899999877
Q ss_pred EEcCCCCCEEEEEecCCcEEEEecCCCCc
Q 001336 1041 AGNPTDPNQFALGLTDGGVYIIEPLEAEG 1069 (1097)
Q Consensus 1041 ~~~p~~~~~l~s~~~Dg~v~~W~~~~~~~ 1069 (1097)
+|+| ++.+|+||+.|++|++||+.+...
T Consensus 371 ~~sp-dg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 371 TMSP-DGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp EECT-TSSCEEEEETTTEEEEECCSCSSC
T ss_pred EEcC-CCCEEEEEecCCeEEEEECCCCCc
Confidence 8899 789999999999999999987553
No 94
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.5e-31 Score=295.12 Aligned_cols=251 Identities=18% Similarity=0.291 Sum_probs=206.3
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecC--CCcEEEEEEeCCCcEE
Q 001336 376 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIK 453 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~ 453 (1097)
++.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 36799999999999999999999999999999999987532 23468899999999999863 67 799999999999
Q ss_pred EEECCCC--ceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCc---eeeecCCCCceEEEEEccC---
Q 001336 454 VWDAVTG--TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS---RVDYDAPGHSSTMMAYSAD--- 525 (1097)
Q Consensus 454 iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~--- 525 (1097)
+||+.++ +.+..+.+|...|.+++|+++.++.+|++++.|++|++||++.... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 9999987 4667888999999999998776678999999999999999987543 2334556678999999997
Q ss_pred --------------CCEEEEeeeCCCCCceEEEEeCCCC---eeeEEecCCCCcceEEEEEcCCC----CEEEEEeCCCc
Q 001336 526 --------------GARLFSCGTNKEGESYLVEWNESEG---AVKRTYHGLGKRSVGVVQFDTTK----NRFLAAGDEFM 584 (1097)
Q Consensus 526 --------------~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~ 584 (1097)
+++|++++.| +.|++||++.. +.+..+.+|.. .|.+++|+|++ .+|++++.|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D----~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCD----NLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTT----SBCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred ccccccccccCccccceEEEecCC----CeEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCCe
Confidence 4688888764 46999999755 46677888876 89999999986 78999999999
Q ss_pred EEEEECCCCc----eEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001336 585 IKFWDMDNVN----LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 636 (1097)
Q Consensus 585 i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~ 636 (1097)
|++|++.+.. ....+..+ ...|.+++|+|++.+|++++.|++|++|+...
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 9999997631 12233333 66899999999999999999999999999764
No 95
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-30 Score=297.12 Aligned_cols=286 Identities=17% Similarity=0.242 Sum_probs=233.4
Q ss_pred ccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCC
Q 001336 739 AMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND 818 (1097)
Q Consensus 739 ~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 818 (1097)
...+.++.+++ ..+++++.||.|++|++.. +........ .|...|.+++|+|++
T Consensus 93 ~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~----------------------~~~~~~~~~--~~~~~v~~v~~s~~~ 146 (401)
T 4aez_A 93 DYYLNLLDWSN--LNVVAVALERNVYVWNADS----------------------GSVSALAET--DESTYVASVKWSHDG 146 (401)
T ss_dssp CTTCBCEEECT--TSEEEEEETTEEEEEETTT----------------------CCEEEEEEC--CTTCCEEEEEECTTS
T ss_pred CceEEEEeecC--CCEEEEECCCeEEEeeCCC----------------------CcEeEeeec--CCCCCEEEEEECCCC
Confidence 34455666665 5688899999999997653 332222122 278899999999999
Q ss_pred CEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcc-cceEEEEecccccCeEEE
Q 001336 819 SYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVR-VDEVKTKLKGHQKRITGL 896 (1097)
Q Consensus 819 ~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~-~~~~~~~l~~h~~~V~~l 896 (1097)
++|++++ ||.|++||+.+++.+..+.+|...|.+++|++ .+|++|+.||.|++||+. .+..+..+.+|.+.|.++
T Consensus 147 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 223 (401)
T 4aez_A 147 SFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGL 223 (401)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred CEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEE
Confidence 9999999 99999999999999999999999999999964 699999999999999998 567788899999999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-E---eCCeEEEEeCCCcc
Q 001336 897 AFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-V---HETQIAIYEAPKLE 972 (1097)
Q Consensus 897 ~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~---~d~~v~vwd~~~~~ 972 (1097)
+|+|++.+|++++.|+.|++||+.+++. .....++. ..|.+++|+|++..+++ + .|+.|++||+.+++
T Consensus 224 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~-----~~~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~ 295 (401)
T 4aez_A 224 AWRSDGLQLASGGNDNVVQIWDARSSIP-----KFTKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA 295 (401)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTCSSE-----EEEECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC
T ss_pred EEcCCCCEEEEEeCCCeEEEccCCCCCc-----cEEecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC
Confidence 9999999999999999999999998552 22233333 57999999998765544 4 38999999999999
Q ss_pred eeeeeeccCCCCCEEEEEEecCCCEEEEEe--cCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEE
Q 001336 973 CLKQFVPREASGPITHATYSCDSQSIYVAF--EEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQF 1050 (1097)
Q Consensus 973 ~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s--~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l 1050 (1097)
.+..+. |...|.+++|+|++++|++++ .||.|++|++.+++....... .+|.+.|..+ +|+| ++.+|
T Consensus 296 ~~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~-----~~h~~~v~~~--~~s~-dg~~l 364 (401)
T 4aez_A 296 RVNTVD---AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI-----PAHDTRVLYS--ALSP-DGRIL 364 (401)
T ss_dssp EEEEEE---CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE-----ECCSSCCCEE--EECT-TSSEE
T ss_pred EEEEEe---CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEe-----cCCCCCEEEE--EECC-CCCEE
Confidence 888875 567899999999999999954 899999999998766544321 2577888877 8889 78999
Q ss_pred EEEecCCcEEEEecCCCCcccC
Q 001336 1051 ALGLTDGGVYIIEPLEAEGRWG 1072 (1097)
Q Consensus 1051 ~s~~~Dg~v~~W~~~~~~~~~~ 1072 (1097)
++++.||.|++|++..++..+.
T Consensus 365 ~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 365 STAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp EEECTTSEEEEEECCC------
T ss_pred EEEeCCCcEEEEECCCCccccc
Confidence 9999999999999998775443
No 96
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.3e-30 Score=283.06 Aligned_cols=283 Identities=18% Similarity=0.280 Sum_probs=233.0
Q ss_pred ceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCE
Q 001336 741 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY 820 (1097)
Q Consensus 741 ~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 820 (1097)
..+.++||+++ .|+ ++.|++|+|||+. +++.+.. +...+|...|.+++|+|+|++
T Consensus 27 y~~~l~WS~~~-~lA-vg~D~tV~iWd~~----------------------tg~~~~~-~~~~~~~~~V~~v~~~~~~~~ 81 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLA-VALDNSVYLWSAS----------------------SGDILQL-LQMEQPGEYISSVAWIKEGNY 81 (318)
T ss_dssp TCBCEEECTTS-EEE-EEETTEEEEEETT----------------------TCCEEEE-EECCSTTCCEEEEEECTTSSE
T ss_pred cceEEEECCCC-EEE-EEeCCEEEEEECC----------------------CCCEEEE-EEecCCCCeEEEEEECCCCCE
Confidence 45779999987 454 4568999999654 4443322 112238889999999999999
Q ss_pred EEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccc-eEEEEecccccCeEEEEE
Q 001336 821 VMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD-EVKTKLKGHQKRITGLAF 898 (1097)
Q Consensus 821 la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~-~~~~~l~~h~~~V~~l~~ 898 (1097)
|++|+ |++|++||+.+++++..+.+|...+.++.+. +.++++++.++.+++|+...+ ..+..+.+|...+..+.+
T Consensus 82 l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (318)
T 4ggc_A 82 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 158 (318)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred EEEEECCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence 99999 9999999999999999999999988877765 479999999999999998875 566788999999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE---E-eCCeEEEEeCCCccee
Q 001336 899 SNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA---V-HETQIAIYEAPKLECL 974 (1097)
Q Consensus 899 s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~---~-~d~~v~vwd~~~~~~~ 974 (1097)
++++++|++++.|++|++||+.+++........... +. ..+..+.+++++..++. + .++.|++||.......
T Consensus 159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~ 234 (318)
T 4ggc_A 159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ-HQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234 (318)
T ss_dssp CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECC-CC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred cCCCCEEEEEecCcceeEEECCCCcccccceeeecc-cC---CceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence 999999999999999999999987644332222222 22 56899999998765543 2 5689999999988876
Q ss_pred eeeeccCCCCCEEEEEEecCCCEEEEEe--cCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEE
Q 001336 975 KQFVPREASGPITHATYSCDSQSIYVAF--EEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFAL 1052 (1097)
Q Consensus 975 ~~~~~~~h~~~v~~v~~s~dg~~l~s~s--~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s 1052 (1097)
... .|...+..+.|++++..+++++ .|+.|+|||+.+++.+..+. +|.+.|+++ +|+| ++.+|++
T Consensus 235 ~~~---~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-------gH~~~V~~l--~~sp-dg~~l~S 301 (318)
T 4ggc_A 235 SAV---DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GHTSRVLSL--TMSP-DGATVAS 301 (318)
T ss_dssp EEE---ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CCSSCEEEE--EECT-TSSCEEE
T ss_pred ccc---cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-------CCCCCEEEE--EEcC-CCCEEEE
Confidence 665 3578899999999999988765 79999999999999998876 789999977 8899 7899999
Q ss_pred EecCCcEEEEecCCCC
Q 001336 1053 GLTDGGVYIIEPLEAE 1068 (1097)
Q Consensus 1053 ~~~Dg~v~~W~~~~~~ 1068 (1097)
|+.||+|++||+.+.+
T Consensus 302 ~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 302 AAADETLRLWRCFELD 317 (318)
T ss_dssp EETTTEEEEECCSCCC
T ss_pred EecCCeEEEEECCCCC
Confidence 9999999999998754
No 97
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=6e-31 Score=301.74 Aligned_cols=296 Identities=15% Similarity=0.203 Sum_probs=241.6
Q ss_pred CeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc-CCCEEEEE
Q 001336 321 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTLFGVA 399 (1097)
Q Consensus 321 ~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~las~ 399 (1097)
....++++|+...++++|+.||.|+||++........ ....+.+|.+.|++++|+| ++++||+|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s~ 100 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIASG 100 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEEE
Confidence 3457899999887777889999999999965432210 1113678999999999999 99999999
Q ss_pred ECCCEEEEEEccCCeee----eeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEe--ecCCcCe
Q 001336 400 YSKHIVHLYTYHGGDEL----RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF--EGHESPV 473 (1097)
Q Consensus 400 ~~dg~i~iwd~~~~~~~----~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~h~~~v 473 (1097)
+.||.|+|||+.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++||+.+++.+..+ .+|...|
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 179 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI 179 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence 99999999999987421 223358899999999999999843 7999999999999999999999999 8899999
Q ss_pred EEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeee-cCCCCc-eEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCe
Q 001336 474 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-DAPGHS-STMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 551 (1097)
Q Consensus 474 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 551 (1097)
.+++|++ ++.+|++++.||.|++||+++......+ ..+... +.++.|+|++++++++.. +..++.|.+||++++.
T Consensus 180 ~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 180 YSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBCS
T ss_pred EEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCcccc
Confidence 9999954 6689999999999999999988877776 566554 899999999998888731 2236689999999875
Q ss_pred e-eEEecCCCCcceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce-EEEEecCCCCCCcceEEEcCCCCEEEEEECCCc
Q 001336 552 V-KRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNL-LASIDADGGLQASPCIRFNKEGILLAVSTNDNG 628 (1097)
Q Consensus 552 ~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~ 628 (1097)
. +..........+..++|+|+++++++++ .||.|++||+.+++. +..+..+.+...|.+++|+|++.++++ .++.
T Consensus 257 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~ 334 (402)
T 2aq5_A 257 EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEI 334 (402)
T ss_dssp SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEE
T ss_pred CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--ccee
Confidence 4 3333333334799999999999997655 799999999999884 666665555678999999999988764 5679
Q ss_pred EEEEEcCCC
Q 001336 629 IKILANADG 637 (1097)
Q Consensus 629 i~iw~~~~~ 637 (1097)
+++|++.++
T Consensus 335 ~~~~~l~~~ 343 (402)
T 2aq5_A 335 ARFYKLHER 343 (402)
T ss_dssp EEEEEEETT
T ss_pred EEEEEcCCC
Confidence 999999876
No 98
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=3e-31 Score=292.69 Aligned_cols=256 Identities=13% Similarity=0.143 Sum_probs=205.3
Q ss_pred CCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCc--eeEEeCCCCCCeEEEEEeCC-CCCEEEEEECCCcEEEEEcccc
Q 001336 805 PEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK--TMTTFMPPPPAATFLAFHPQ-DNNIIAIGMEDSSIQIYNVRVD 880 (1097)
Q Consensus 805 h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~sp~-~~~~la~g~~dg~v~vwd~~~~ 880 (1097)
|...|.+++|+|+|++||+++ |++|+|||+.+++ ++..+.+|...|.+++|+++ ++++|++|+.|++|++||+.++
T Consensus 12 H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~ 91 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG 91 (316)
T ss_dssp --CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS
T ss_pred ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC
Confidence 999999999999999999999 9999999998764 56788999999999999862 4789999999999999999887
Q ss_pred --eEEEEecccccCeEEEEEecC--CCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCC-----
Q 001336 881 --EVKTKLKGHQKRITGLAFSNT--LNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD----- 951 (1097)
Q Consensus 881 --~~~~~l~~h~~~V~~l~~s~d--g~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d----- 951 (1097)
+.+..+.+|...|++++|+|+ +.+|++++.|++|++||+..+.. ........+|. ..+.+++|+|+
T Consensus 92 ~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~--~~~~~~~~~h~---~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 92 TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ--WEVKKINNAHT---IGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC--EEECCBTTSSS---SCBCCCEECCCCCC--
T ss_pred cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC--cceeeeecccc---CCcceEEEccccCCcc
Confidence 467788899999999999998 78999999999999999987431 11223344444 57889999998
Q ss_pred ------------CcEEEE-EeCCeEEEEeCCCc---ceeeeeeccCCCCCEEEEEEecCC----CEEEEEecCCeEEEEe
Q 001336 952 ------------QTHLLA-VHETQIAIYEAPKL---ECLKQFVPREASGPITHATYSCDS----QSIYVAFEEGSVGVLT 1011 (1097)
Q Consensus 952 ------------g~~l~~-~~d~~v~vwd~~~~---~~~~~~~~~~h~~~v~~v~~s~dg----~~l~s~s~Dg~v~vwd 1011 (1097)
+++|++ +.|+.|++||+... +.+..+ .+|...|.+++|+|++ .+|++++.|++|++|+
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l--~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~ 244 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL--EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC--BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec--ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence 467777 58999999999755 234444 4899999999999997 8899999999999999
Q ss_pred CCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCCCcccCCC
Q 001336 1012 ASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTS 1074 (1097)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~~~~~~~~ 1074 (1097)
+.+....... .....+|.+.|+.+ +|+| ++.+|++++.||+|++|+.... +.|...
T Consensus 245 ~~~~~~~~~~---~~~~~~~~~~v~~v--~~sp-~g~~las~~~D~~v~lw~~~~~-g~~~~~ 300 (316)
T 3bg1_A 245 CDDASSNTWS---PKLLHKFNDVVWHV--SWSI-TANILAVSGGDNKVTLWKESVD-GQWVCI 300 (316)
T ss_dssp CSSTTCCCCB---CCEEEECSSCEEEE--EECT-TTCCEEEEESSSCEEEEEECTT-SCEEEE
T ss_pred ccCccccchh---hhhhhcCCCcEEEE--EEcC-CCCEEEEEcCCCeEEEEEECCC-CcEEEe
Confidence 9763210000 00112467788866 8999 6899999999999999998643 556543
No 99
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=2.6e-30 Score=299.62 Aligned_cols=272 Identities=21% Similarity=0.341 Sum_probs=237.3
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
|...|+|++| +++ ++++|+.||.|+|||+.+++.+.. +.+|...|.+++| ++++|+
T Consensus 132 ~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~~l~ 187 (435)
T 1p22_A 132 TSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVII 187 (435)
T ss_dssp SCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEEE
T ss_pred CCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCCEEE
Confidence 5677888887 677 468999999999999999887653 6789999999999 889999
Q ss_pred EEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCcee---EEeecCCcCeE
Q 001336 398 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ---YIFEGHESPVY 474 (1097)
Q Consensus 398 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~---~~~~~h~~~v~ 474 (1097)
+|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|+.|++||+.+++.+ ..+.+|...|.
T Consensus 188 sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~--~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 260 (435)
T 1p22_A 188 TGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFN--NG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260 (435)
T ss_dssp EEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECC--TT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred EEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEc--CC--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE
Confidence 99999999999999988665 477899999999997 34 7999999999999999988766 67889999999
Q ss_pred EEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeE
Q 001336 475 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR 554 (1097)
Q Consensus 475 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 554 (1097)
++++ ++.++++++.||.|++||+++......+..+...|.++.+ +++++++++.++ .|++||+++++.+.
T Consensus 261 ~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg----~i~iwd~~~~~~~~ 330 (435)
T 1p22_A 261 VVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN----TIRLWDIECGACLR 330 (435)
T ss_dssp EEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTS----CEEEEETTTCCEEE
T ss_pred EEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCC----eEEEEECCCCCEEE
Confidence 9988 3479999999999999999999988888888889999988 578999988644 69999999999999
Q ss_pred EecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------eEEEEecCCCCCCcceEEEcCCCCEEEEEEC
Q 001336 555 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN---------LLASIDADGGLQASPCIRFNKEGILLAVSTN 625 (1097)
Q Consensus 555 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~ 625 (1097)
.+.+|.. .+.+++| ++.+|++|+.||.|++||+.+++ .+..+..| ...|.+++| ++.+|++++.
T Consensus 331 ~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~~~l~s~s~ 403 (435)
T 1p22_A 331 VLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQF--DEFQIVSSSH 403 (435)
T ss_dssp EECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEE--CSSCEEECCS
T ss_pred EEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC--CCCeEEEEe--CCCEEEEEeC
Confidence 9999887 8999888 78899999999999999997766 77777755 678999999 6789999999
Q ss_pred CCcEEEEEcCCC
Q 001336 626 DNGIKILANADG 637 (1097)
Q Consensus 626 dg~i~iw~~~~~ 637 (1097)
||.|++||+.++
T Consensus 404 Dg~i~iwd~~~~ 415 (435)
T 1p22_A 404 DDTILIWDFLND 415 (435)
T ss_dssp SSEEEEEC----
T ss_pred CCEEEEEECCCC
Confidence 999999999876
No 100
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=3e-30 Score=292.20 Aligned_cols=292 Identities=17% Similarity=0.225 Sum_probs=239.9
Q ss_pred CCceEEEEee-cCCCeeEEEEccCC--CeEEEEEeCCCeEEEEEcCC-CceeeeeeeeEeeccccCccccccccCCCCCC
Q 001336 308 LPKTVVMTLN-QGSAVKSMDFHPVQ--QILLVVGTNMGDVMLWEVGS-RERIAVKSFKVWELGACSMPLQASLSSDYTAS 383 (1097)
Q Consensus 308 ~~~~~~~~~~-h~~~V~~v~fspdg--~~lla~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 383 (1097)
.+...+..+. |.+.|++++|+|++ ..+|++|+.||.|+|||+.+ +..+.. .+.+|...
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~~ 88 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTGP 88 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSSC
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE------------------EeccccCC
Confidence 3455666666 99999999999994 23679999999999999997 443321 25679999
Q ss_pred eEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEE--ecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001336 384 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF--SYPNKQLSVVTCGEDRVIKVWDAVTGT 461 (1097)
Q Consensus 384 V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~--s~d~~~~~l~s~s~d~~i~iwd~~~~~ 461 (1097)
|.+++|+|++++|++|+.||.|++||+.+++.+. +.+|...|.+++| ++++. +|++++.|+.|++||+.+++
T Consensus 89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSS
T ss_pred EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCc
Confidence 9999999999999999999999999999987554 5679999999999 88888 89999999999999999999
Q ss_pred eeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecC--CCCceEEEEEccCCCE----EEEeeeC
Q 001336 462 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA--PGHSSTMMAYSADGAR----LFSCGTN 535 (1097)
Q Consensus 462 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~----l~~~~~~ 535 (1097)
.+..+..|. .+.++.+. . ..+++++.++.+++|+++.......... ....+.++.+.++... +++++.
T Consensus 163 ~~~~~~~~~-~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 236 (368)
T 3mmy_A 163 PMMVLQLPE-RCYCADVI--Y--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI- 236 (368)
T ss_dssp CSEEEECSS-CEEEEEEE--T--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET-
T ss_pred EEEEEecCC-CceEEEec--C--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC-
Confidence 999998765 56666653 3 4788889999999999987665444322 3346667777665554 888775
Q ss_pred CCCCceEEEEeCCCC---eeeEEecCCCCc-----------ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 001336 536 KEGESYLVEWNESEG---AVKRTYHGLGKR-----------SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 601 (1097)
Q Consensus 536 ~~~~~~i~~wd~~~~---~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 601 (1097)
++.|++||+... .....+.+|... .+.+++|+|++++|++++.||.|++||+.+++++..+..
T Consensus 237 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (368)
T 3mmy_A 237 ---EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ 313 (368)
T ss_dssp ---TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred ---CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence 447999999987 567777777542 599999999999999999999999999999999998885
Q ss_pred CCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001336 602 DGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 634 (1097)
Q Consensus 602 ~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~ 634 (1097)
| ...|.+++|+|++.+|++++.|+..+.|++
T Consensus 314 ~--~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 314 L--DQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp C--SSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred C--CCCceEEEECCCCCeEEEEecccccccccc
Confidence 5 678999999999999999999886555544
No 101
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.98 E-value=2e-30 Score=290.51 Aligned_cols=280 Identities=8% Similarity=0.078 Sum_probs=236.5
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCC-EE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT-LF 396 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~-~l 396 (1097)
|.+.|++++|+|++++ |++|+.||.|+|||+.+++..... ..+.+|...|.+++|+|+++ +|
T Consensus 10 h~~~v~~~~~s~~~~~-l~~~~~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~~~~~l 72 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSL-LLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNFIDNTDLQI 72 (342)
T ss_dssp CSSCEEEEEEEGGGTE-EEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEEEESSSEEE
T ss_pred CCCcEEEEEEcCCCCE-EEEEcCCCeEEEEEeCCCCccccc----------------eeeeecCCceEEEEECCCCCcEE
Confidence 8899999999999995 589999999999999887621100 01347999999999999999 99
Q ss_pred EEEECCCEEEEEEc-cCCeeeeeeeeeec--ccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCC---------CceeE
Q 001336 397 GVAYSKHIVHLYTY-HGGDELRNHLEIEA--HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT---------GTKQY 464 (1097)
Q Consensus 397 as~~~dg~i~iwd~-~~~~~~~~~~~l~~--h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~---------~~~~~ 464 (1097)
++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| +. +|++++.|+.|++||+.+ ++++.
T Consensus 73 ~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 73 YVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp EEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred EEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 99999999999999 88764 24778 999999999999 77 899999999999999988 77777
Q ss_pred EeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCC-CCc--eeeecCCCCceEEEEEcc-CCCEEEEeeeCCCCCc
Q 001336 465 IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN-LGS--RVDYDAPGHSSTMMAYSA-DGARLFSCGTNKEGES 540 (1097)
Q Consensus 465 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~ 540 (1097)
.+. |...|.+++|+ +++ +++++.|+.|++||++. ... ......+...+.+++|+| +++++++++.+ +
T Consensus 146 ~~~-~~~~v~~~~~~--~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d----g 216 (342)
T 1yfq_A 146 NTK-VKNKIFTMDTN--SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID----G 216 (342)
T ss_dssp SSS-SCCCEEEEEEC--SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT----S
T ss_pred EEe-eCCceEEEEec--CCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecC----C
Confidence 777 89999999985 443 99999999999999987 443 334445667899999999 99999999864 4
Q ss_pred eEEEEeCCCC------eeeEEecCCCC--------cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCC
Q 001336 541 YLVEWNESEG------AVKRTYHGLGK--------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ 606 (1097)
Q Consensus 541 ~i~~wd~~~~------~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 606 (1097)
.|.+|++... +....+..|.. ..+.+++|+|++++|++++.||.|++||+.+++.+..+..| |..
T Consensus 217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-h~~ 295 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NED 295 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSS
T ss_pred cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc-cCC
Confidence 7999999876 77778877642 37999999999999999999999999999999998887743 155
Q ss_pred CcceEEEcCCCCEEEEEECCCc-EEEEE
Q 001336 607 ASPCIRFNKEGILLAVSTNDNG-IKILA 633 (1097)
Q Consensus 607 ~v~~v~~s~~~~~l~s~~~dg~-i~iw~ 633 (1097)
.|.+++ |++.+|++++.||. .+.+.
T Consensus 296 ~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 296 SVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred CceEec--CCCCeEEEEecCCccccccc
Confidence 788988 99999999999998 55444
No 102
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=9.7e-30 Score=296.64 Aligned_cols=250 Identities=12% Similarity=0.212 Sum_probs=206.2
Q ss_pred CCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCee--------eeeeeeeeccc------------CcEEEEEEecCC
Q 001336 379 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE--------LRNHLEIEAHV------------GSVNDLAFSYPN 438 (1097)
Q Consensus 379 ~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~--------~~~~~~l~~h~------------~~V~~l~~s~d~ 438 (1097)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 4678999999999999999999999999999987652 11234588998 889999999998
Q ss_pred --CcEEEEEEeCCCcEEEEECCCCcee---------------------------------------EE-eecCCcCeEEE
Q 001336 439 --KQLSVVTCGEDRVIKVWDAVTGTKQ---------------------------------------YI-FEGHESPVYSI 476 (1097)
Q Consensus 439 --~~~~l~s~s~d~~i~iwd~~~~~~~---------------------------------------~~-~~~h~~~v~~~ 476 (1097)
. .|++++.|+.|++||+.++... .. ..+|...|.++
T Consensus 106 ~~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 106 NAA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SSS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred Ccc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 5 7999999999999998765432 12 36899999999
Q ss_pred eecccCCccEEEEEcCCCeEEEEEcCCCCceee--------ecCCCCceEEEEEccCC-CEEEEeeeCCCCCceEEEEeC
Q 001336 477 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD--------YDAPGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWNE 547 (1097)
Q Consensus 477 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~ 547 (1097)
+|++ ++.+|+++ .|+.|++||++....... +..+...|.+++|+|++ ++|++++.++ .|++||+
T Consensus 184 ~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg----~i~iwd~ 256 (447)
T 3dw8_B 184 SINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG----TIRLCDM 256 (447)
T ss_dssp EECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS----CEEEEET
T ss_pred EEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC----eEEEEEC
Confidence 9955 66899998 799999999985443332 45677789999999999 8999998654 6999999
Q ss_pred CCCee----eEEecCCCC-----------cceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEecCCCCCC----
Q 001336 548 SEGAV----KRTYHGLGK-----------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQA---- 607 (1097)
Q Consensus 548 ~~~~~----~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~---- 607 (1097)
++++. +..+.++.. ..|.+++|+|++++|++++. +.|++||+.+ ++++..+..|.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 99887 788888764 27999999999999999999 9999999997 888888876632111
Q ss_pred ---------cceEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001336 608 ---------SPCIRFNKEGILLAVSTNDNGIKILANADGI 638 (1097)
Q Consensus 608 ---------v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~ 638 (1097)
+..++|+|++.+|++++.||.|++||+.++.
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 2349999999999999999999999999883
No 103
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.3e-29 Score=284.58 Aligned_cols=253 Identities=11% Similarity=0.171 Sum_probs=214.9
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeee-eeeeeeecccCcEEEEEEec--CCCcEEEEEEeCCCcE
Q 001336 376 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDEL-RNHLEIEAHVGSVNDLAFSY--PNKQLSVVTCGEDRVI 452 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~V~~l~~s~--d~~~~~l~s~s~d~~i 452 (1097)
++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|++++|+| +++ +|++++.|+.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 47899999999999999999999999999999999876422 23345789999999999999 577 89999999999
Q ss_pred EEEECCCC---------ceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeec------------
Q 001336 453 KVWDAVTG---------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD------------ 511 (1097)
Q Consensus 453 ~iwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------ 511 (1097)
++||+.++ +.+..+.+|...|.+++|++..++.++++++.||.|++||+++......+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999887 567888999999999999665336899999999999999998776543322
Q ss_pred -CCCCceEEEEEccC---CCEEEEeeeCCCCCceEEEEeCCCCee--eEEecCCCCcceEEEEEcCCC----CEEEEEeC
Q 001336 512 -APGHSSTMMAYSAD---GARLFSCGTNKEGESYLVEWNESEGAV--KRTYHGLGKRSVGVVQFDTTK----NRFLAAGD 581 (1097)
Q Consensus 512 -~~~~~v~~~~~s~~---~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~ 581 (1097)
.+...+.+++|+|+ +.++++++.+ +.+.+|+...++. +..+.+|.. .|.+++|+|++ ++|++++.
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALE----QAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETT----EEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEEEEEEET
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCC----CcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceEEEEEcC
Confidence 45568999999997 8899998754 4677777777654 677778776 89999999998 89999999
Q ss_pred CCcEEEEECCCC----------------------------------------------ceEEEEecCCCCCCcceEEEcC
Q 001336 582 EFMIKFWDMDNV----------------------------------------------NLLASIDADGGLQASPCIRFNK 615 (1097)
Q Consensus 582 dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~v~~s~ 615 (1097)
||.|++||+.++ +.+..+..| ...|++++|+|
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s~ 316 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH--NGEVWSVSWNL 316 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT--SSCEEEEEECS
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc--cccEEEEEEcC
Confidence 999999999875 455555544 67899999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCC
Q 001336 616 EGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 616 ~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
++++|++++.||.|++|++.++
T Consensus 317 ~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 317 TGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp SSCCEEEEETTSCEEEEEECTT
T ss_pred CCCEEEEecCCCcEEEEecCcC
Confidence 9999999999999999999887
No 104
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=3e-29 Score=283.90 Aligned_cols=250 Identities=16% Similarity=0.161 Sum_probs=203.3
Q ss_pred ccCCCCCCeEEEEEccC---CCEEEEEECCCEEEEEEccC-CeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCc
Q 001336 376 LSSDYTASVNRVMWSPD---GTLFGVAYSKHIVHLYTYHG-GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV 451 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd---~~~las~~~dg~i~iwd~~~-~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~ 451 (1097)
++.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+. ..+.+|...|++++|+|+++ +|++++.|+.
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~ 109 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--KAQQMHTGPVLDVCWSDDGS--KVFTASCDKT 109 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE--EEEEECSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE--EEeccccCCEEEEEECcCCC--EEEEEcCCCc
Confidence 37899999999999999 69999999999999999997 44332 25788999999999999999 8999999999
Q ss_pred EEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEE
Q 001336 452 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFS 531 (1097)
Q Consensus 452 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 531 (1097)
|++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++.+....+..+. .+.++.+.+ ..+++
T Consensus 110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~ 185 (368)
T 3mmy_A 110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVV 185 (368)
T ss_dssp EEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEE
T ss_pred EEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEE
Confidence 9999999998776 5569999999999777788999999999999999999888777776654 555555554 46666
Q ss_pred eeeCCCCCceEEEEeCCCCeee-EEecCCCCcceEEEEEcCCCCE----EEEEeCCCcEEEEECCCC---ceEEEEecCC
Q 001336 532 CGTNKEGESYLVEWNESEGAVK-RTYHGLGKRSVGVVQFDTTKNR----FLAAGDEFMIKFWDMDNV---NLLASIDADG 603 (1097)
Q Consensus 532 ~~~~~~~~~~i~~wd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~----l~~~~~dg~i~iwd~~~~---~~~~~~~~~~ 603 (1097)
++.+ ..+.+|++...... ............++.+.++... +++++.||.|++|++... +.+..+..|.
T Consensus 186 ~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 261 (368)
T 3mmy_A 186 ATAE----RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR 261 (368)
T ss_dssp EEGG----GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred EeCC----CcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence 6653 36999999876433 3333333335666666665544 999999999999999987 5666776552
Q ss_pred CC----------CCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 604 GL----------QASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 604 ~~----------~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
.. ..|.+++|+|++.+|++++.||.|++||+.++
T Consensus 262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence 21 16999999999999999999999999999877
No 105
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=3.4e-29 Score=280.39 Aligned_cols=248 Identities=10% Similarity=-0.012 Sum_probs=209.1
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 456 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 456 (1097)
..+|.+.|++++|+|++++|++++.||.|+||++.+++.......+.+|...|.+++|+|+++. +|++|+.|+.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 5689999999999999999999999999999999987622223346689999999999999872 389999999999999
Q ss_pred C-CCCceeEEeec--CCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCC---------CCceeeecCCCCceEEEEEcc
Q 001336 457 A-VTGTKQYIFEG--HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN---------LGSRVDYDAPGHSSTMMAYSA 524 (1097)
Q Consensus 457 ~-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~s~ 524 (1097)
+ .+++. ..+.+ |...|.+++|++ +..+++++.|+.|++||+++ ......+. +...+.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 9 77754 77888 999999999966 57999999999999999987 55555554 667899999999
Q ss_pred CCCEEEEeeeCCCCCceEEEEeCCC-Ce--eeEEecCCCCcceEEEEEcC-CCCEEEEEeCCCcEEEEECCCC------c
Q 001336 525 DGARLFSCGTNKEGESYLVEWNESE-GA--VKRTYHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNV------N 594 (1097)
Q Consensus 525 ~~~~l~~~~~~~~~~~~i~~wd~~~-~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~ 594 (1097)
++ +++++. ++.|++||+++ +. .......+.. .+.+++|+| +++++++++.||.|++|+++.. +
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~ 233 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCCC-ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc
Confidence 88 777765 44799999998 54 2333344444 899999999 9999999999999999999887 7
Q ss_pred eEEEEecCCC-------CCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 595 LLASIDADGG-------LQASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 595 ~~~~~~~~~~-------~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
....+..+.. ...|.+++|+|++.+|++++.||.|++||+.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 8888876632 348999999999999999999999999999887
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=4.6e-29 Score=289.18 Aligned_cols=235 Identities=17% Similarity=0.318 Sum_probs=209.0
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 456 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 456 (1097)
..+|...|.|++| ++++|++|+.||.|++||+.+++.+. .+.+|...|.+++| +++ +|++|+.||.|++||
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd 199 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD 199 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEE
Confidence 3467788999887 89999999999999999999987655 57899999999999 677 899999999999999
Q ss_pred CCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCce---eeecCCCCceEEEEEccCCCEEEEee
Q 001336 457 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR---VDYDAPGHSSTMMAYSADGARLFSCG 533 (1097)
Q Consensus 457 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~ 533 (1097)
+.+++.+..+.+|...|.+++|+ + ..+++++.||.|++||+++.... ..+..+...|.+++| +++++++++
T Consensus 200 ~~~~~~~~~~~~h~~~v~~l~~~--~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~ 273 (435)
T 1p22_A 200 VNTGEMLNTLIHHCEAVLHLRFN--N--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS 273 (435)
T ss_dssp SSSCCEEEEECCCCSCEEEEECC--T--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred CCCCcEEEEEcCCCCcEEEEEEc--C--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEe
Confidence 99999999999999999999984 3 58999999999999999987665 556677889999998 788999998
Q ss_pred eCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEE
Q 001336 534 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF 613 (1097)
Q Consensus 534 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 613 (1097)
.+ +.|++||+++++.+..+.+|.. .+.++.+ +++++++|+.||.|++||+.+++.+..+..| ...|.+++|
T Consensus 274 ~d----g~i~vwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~ 344 (435)
T 1p22_A 274 GD----RTIKVWNTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRF 344 (435)
T ss_dssp TT----SEEEEEETTTCCEEEEEECCSS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEC
T ss_pred CC----CeEEEEECCcCcEEEEEcCCCC-cEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCC--cCcEEEEEe
Confidence 64 4799999999999999999887 8888888 4679999999999999999999999999865 678999999
Q ss_pred cCCCCEEEEEECCCcEEEEEcCCC
Q 001336 614 NKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 614 s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
++.+|++|+.||.|++||+.++
T Consensus 345 --~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 345 --DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp --CSSEEEEEETTSCEEEEEHHHH
T ss_pred --cCCEEEEEeCCCcEEEEECCCC
Confidence 6889999999999999998654
No 107
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.7e-29 Score=283.69 Aligned_cols=254 Identities=15% Similarity=0.262 Sum_probs=217.5
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecC--CCcEEEEEEeCCCcEE
Q 001336 376 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIK 453 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~ 453 (1097)
++.+|...|++++|+|++++||+|+.||.|+|||+..+. ......+.+|...|++++|+++ +. +|++++.|+.|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~ 82 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 82 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEE
Confidence 377899999999999999999999999999999998543 2333358899999999999987 77 899999999999
Q ss_pred EEECCCCc--eeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCC--ceeeecCCCCceEEEEEcc-----
Q 001336 454 VWDAVTGT--KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG--SRVDYDAPGHSSTMMAYSA----- 524 (1097)
Q Consensus 454 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~----- 524 (1097)
+||+.+++ .+..+.+|...|.+++|++..++.++++++.|+.|++||++... ....+..+...|.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 99999997 77888899999999999765336899999999999999998774 3445667778999999999
Q ss_pred --------CCCEEEEeeeCCCCCceEEEEeCCCCe----eeEEecCCCCcceEEEEEcCC---CCEEEEEeCCCcEEEEE
Q 001336 525 --------DGARLFSCGTNKEGESYLVEWNESEGA----VKRTYHGLGKRSVGVVQFDTT---KNRFLAAGDEFMIKFWD 589 (1097)
Q Consensus 525 --------~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd 589 (1097)
++.++++++.++ .|++||++++. ....+.+|.. .|.+++|+|+ +++|++++.||.|++||
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADN----LVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp -------CTTCEEEEEETTS----CEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccccCCCCCCEEEEEeCCC----eEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 699999998654 69999998753 5567777776 8999999999 89999999999999999
Q ss_pred CCCCc---eEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 590 MDNVN---LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 590 ~~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
+.++. ....+....+...|.+++|+|++.+|++++.||.|++|++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 99875 3333343345778999999999999999999999999999865
No 108
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.2e-28 Score=276.69 Aligned_cols=261 Identities=11% Similarity=0.132 Sum_probs=217.1
Q ss_pred ecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc--CCC
Q 001336 317 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGT 394 (1097)
Q Consensus 317 ~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~ 394 (1097)
.|.+.|++++|+|++++ |++|+.||.|+|||+.++....... ..+.+|...|++++|+| |++
T Consensus 9 gH~~~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~---------------~~~~~~~~~v~~~~~~~~~d~~ 72 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRH-VATCSSDQHIKVFKLDKDTSNWELS---------------DSWRAHDSSIVAIDWASPEYGR 72 (351)
T ss_dssp CCSSCEEEEEECSSSSE-EEEEETTSEEEEEEECSSSCCEEEE---------------EEEECCSSCEEEEEECCGGGCS
T ss_pred ccccceeEEEEcCCCCE-EEEeeCCCeEEEEECCCCCCcceec---------------ceeccCCCcEEEEEEcCCCCCC
Confidence 48999999999999995 5899999999999998764322110 12568999999999999 699
Q ss_pred EEEEEECCCEEEEEEccCCee------eeeeeeeecccCcEEEEEEecC--CCcEEEEEEeCCCcEEEEECCCCceeEEe
Q 001336 395 LFGVAYSKHIVHLYTYHGGDE------LRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIKVWDAVTGTKQYIF 466 (1097)
Q Consensus 395 ~las~~~dg~i~iwd~~~~~~------~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 466 (1097)
+|++|+.||.|++||+.+++. ......+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++.+..+
T Consensus 73 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~ 150 (351)
T 3f3f_A 73 IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLRSW 150 (351)
T ss_dssp EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTTCC
T ss_pred EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhccc
Confidence 999999999999999988632 1233457889999999999999 88 8999999999999999988766544
Q ss_pred e-------------cCCcCeEEEeecccC-CccEEEEEcCCCeEEEEEcCCCCc--eeeecCCCCceEEEEEccCC----
Q 001336 467 E-------------GHESPVYSICPHHKE-NIQFIFSTATDGKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSADG---- 526 (1097)
Q Consensus 467 ~-------------~h~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~---- 526 (1097)
. +|...+.+++|++.. ++..+++++.|+.+.+|+...... ...+..|...|.+++|+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~ 230 (351)
T 3f3f_A 151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY 230 (351)
T ss_dssp EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSS
T ss_pred cccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcc
Confidence 3 688899999997641 257999999999998888776654 44556677899999999998
Q ss_pred CEEEEeeeCCCCCceEEEEeCCCC----------------------------------------------eeeEEecCCC
Q 001336 527 ARLFSCGTNKEGESYLVEWNESEG----------------------------------------------AVKRTYHGLG 560 (1097)
Q Consensus 527 ~~l~~~~~~~~~~~~i~~wd~~~~----------------------------------------------~~~~~~~~~~ 560 (1097)
++|++++.|+ .|++||+..+ +.+..+.+|.
T Consensus 231 ~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 306 (351)
T 3f3f_A 231 QLIATGCKDG----RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN 306 (351)
T ss_dssp EEEEEEETTS----CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS
T ss_pred eEEEEEcCCC----eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc
Confidence 7899988644 6999999875 6677788887
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001336 561 KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID 600 (1097)
Q Consensus 561 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 600 (1097)
. .|.+++|+|++++|++++.||.|++|++.+++.+..+.
T Consensus 307 ~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 307 G-EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp S-CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred c-cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 6 89999999999999999999999999999887666553
No 109
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-28 Score=280.56 Aligned_cols=259 Identities=14% Similarity=0.188 Sum_probs=212.3
Q ss_pred EEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccC
Q 001336 314 MTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 392 (1097)
Q Consensus 314 ~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 392 (1097)
..+. |...|++++|+|+|++ |++|+.||.|+|||+..+...... .+.+|...|++++|+|+
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~-----------------~~~~h~~~v~~~~~~~~ 66 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLID-----------------TLTGHEGPVWRVDWAHP 66 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSE-EEEEETTSCEEEEEEETTEEEEEE-----------------EECCCSSCEEEEEECCG
T ss_pred EEecCCcccEEEEEEcCCCCE-EEEEECCCcEEEEecCCCcceeee-----------------EecCCCCcEEEEEeCCC
Confidence 3444 9999999999999995 589999999999999843321111 26789999999999987
Q ss_pred --CCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecC--CCcEEEEEEeCCCcEEEEECCCCc--eeEEe
Q 001336 393 --GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIKVWDAVTGT--KQYIF 466 (1097)
Q Consensus 393 --~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~ 466 (1097)
+++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ +. +|++++.|+.|++||+.++. ....+
T Consensus 67 ~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~ 143 (379)
T 3jrp_A 67 KFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIII 143 (379)
T ss_dssp GGCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEE
T ss_pred CCCCEEEEeccCCEEEEEEcCCCce-eEeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEe
Confidence 99999999999999999999862 233357789999999999999 88 89999999999999998874 44567
Q ss_pred ecCCcCeEEEeecccC-----------CccEEEEEcCCCeEEEEEcCCCCce----eeecCCCCceEEEEEccC---CCE
Q 001336 467 EGHESPVYSICPHHKE-----------NIQFIFSTATDGKIKAWLYDNLGSR----VDYDAPGHSSTMMAYSAD---GAR 528 (1097)
Q Consensus 467 ~~h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~---~~~ 528 (1097)
.+|...|.+++|++.. ++.++++++.|+.|++||++..... ..+..|...|.+++|+|+ +++
T Consensus 144 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~ 223 (379)
T 3jrp_A 144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 223 (379)
T ss_dssp ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCe
Confidence 8899999999997632 5689999999999999999876543 345667889999999999 899
Q ss_pred EEEeeeCCCCCceEEEEeCCCCe---eeEEec--CCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEE
Q 001336 529 LFSCGTNKEGESYLVEWNESEGA---VKRTYH--GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLAS 598 (1097)
Q Consensus 529 l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 598 (1097)
|++++.++ .|++||+.++. ....+. .+.. .+.+++|+|++++|++++.||.|++|++..+.....
T Consensus 224 l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 293 (379)
T 3jrp_A 224 LASVSQDR----TCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEP 293 (379)
T ss_dssp EEEEETTS----CEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEEE
T ss_pred EEEEeCCC----EEEEEeCCCCCccceeeeeccccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcccc
Confidence 99998654 69999998863 222222 2444 899999999999999999999999999986544433
No 110
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=6.1e-29 Score=285.02 Aligned_cols=248 Identities=15% Similarity=0.164 Sum_probs=208.5
Q ss_pred CCeEEEEEccCCCEEE-EEECCCEEEEEEccCCeee-eeeeeeecccCcEEEEEEec-CCCcEEEEEEeCCCcEEEEECC
Q 001336 382 ASVNRVMWSPDGTLFG-VAYSKHIVHLYTYHGGDEL-RNHLEIEAHVGSVNDLAFSY-PNKQLSVVTCGEDRVIKVWDAV 458 (1097)
Q Consensus 382 ~~V~~v~~spd~~~la-s~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~V~~l~~s~-d~~~~~l~s~s~d~~i~iwd~~ 458 (1097)
.....++++|+...++ +++.||.|+||++...... .....+.+|.+.|++++|+| ++. +|++|+.|+.|++||+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence 3455689999876544 5789999999999664332 23335789999999999999 787 89999999999999999
Q ss_pred CC-------ceeEEeecCCcCeEEEeecccCCc-cEEEEEcCCCeEEEEEcCCCCceeee--cCCCCceEEEEEccCCCE
Q 001336 459 TG-------TKQYIFEGHESPVYSICPHHKENI-QFIFSTATDGKIKAWLYDNLGSRVDY--DAPGHSSTMMAYSADGAR 528 (1097)
Q Consensus 459 ~~-------~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~ 528 (1097)
++ +++..+.+|...|.+++|++ ++ .+|++++.|+.|++||+++.+....+ ..+...|.+++|+|++++
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 190 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHP--TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL 190 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECS--SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECc--CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE
Confidence 88 67889999999999999955 44 69999999999999999998888787 678889999999999999
Q ss_pred EEEeeeCCCCCceEEEEeCCCCeeeEEe-cCCCCcceEEEEEcCCCCEEEEE---eCCCcEEEEECCCCce-EEEEecCC
Q 001336 529 LFSCGTNKEGESYLVEWNESEGAVKRTY-HGLGKRSVGVVQFDTTKNRFLAA---GDEFMIKFWDMDNVNL-LASIDADG 603 (1097)
Q Consensus 529 l~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~ 603 (1097)
|++++.+ +.|++||+++++.+..+ .+|....+..+.|+|++.+|++| +.|+.|++||+.+++. +..... .
T Consensus 191 l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~ 265 (402)
T 2aq5_A 191 ICTSCRD----KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-D 265 (402)
T ss_dssp EEEEETT----SEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-C
T ss_pred EEEEecC----CcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-c
Confidence 9999864 47999999999999998 67776558999999999999998 7999999999998765 333332 3
Q ss_pred CCCCcceEEEcCCCCEEEE-EECCCcEEEEEcCCCc
Q 001336 604 GLQASPCIRFNKEGILLAV-STNDNGIKILANADGI 638 (1097)
Q Consensus 604 ~~~~v~~v~~s~~~~~l~s-~~~dg~i~iw~~~~~~ 638 (1097)
+...+.+++|+|++.+|++ ++.||.|++|++.++.
T Consensus 266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 3567899999999999875 4579999999998773
No 111
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-27 Score=278.96 Aligned_cols=300 Identities=12% Similarity=0.063 Sum_probs=232.5
Q ss_pred CCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCc---eeeeeeeeEeecccc----------------------------
Q 001336 320 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE---RIAVKSFKVWELGAC---------------------------- 368 (1097)
Q Consensus 320 ~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~---------------------------- 368 (1097)
.++.+++|+|||+ +|+++ .++.|.+||+.+|+ .+. .|.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAG-----KWSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEE-----EEECCC-----------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeee-----ecCCccccccccccccchhhccccccccccccccc
Confidence 5788999999999 44444 57899999999998 333 2221100
Q ss_pred ------------CccccccccCCCCCCeEEEEEccCCCEE-EEEECCCEEEEEEcc--CCeeeeeeeeeecccCcEEEEE
Q 001336 369 ------------SMPLQASLSSDYTASVNRVMWSPDGTLF-GVAYSKHIVHLYTYH--GGDELRNHLEIEAHVGSVNDLA 433 (1097)
Q Consensus 369 ------------~~~~~~~~~~~h~~~V~~v~~spd~~~l-as~~~dg~i~iwd~~--~~~~~~~~~~l~~h~~~V~~l~ 433 (1097)
..........+|.+.|.+++|+|++++| |+|+.||.|+|||+. +++.+.... ...|...|.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~ 156 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAIS 156 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEE
Confidence 0000001123577789999999999996 889999999999999 777655321 236788999999
Q ss_pred EecCCCcEEEEEEeCCCcEEEEECCCCceeE----EeecCCcCeEEEeeccc-CCccEEEEEcCCCeEEEEEcCCCCcee
Q 001336 434 FSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY----IFEGHESPVYSICPHHK-ENIQFIFSTATDGKIKAWLYDNLGSRV 508 (1097)
Q Consensus 434 ~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~----~~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~ 508 (1097)
|+|+++ +|++|+.|+.|++|++.+++... .+.+|...|.+++|+++ ..+.+|++++.|+.|++||+++.....
T Consensus 157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 999999 89999999999999998887554 78899999999999765 226899999999999999999887776
Q ss_pred e-ecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCC------------------------CCcc
Q 001336 509 D-YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL------------------------GKRS 563 (1097)
Q Consensus 509 ~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~------------------------~~~~ 563 (1097)
. +..|...|.+++|+ ++++|++++.| +.|++||+.+++.+..+..+ ....
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~d----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGGD----DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEESS----SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeCC----CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 6 55778899999999 99999999864 47999999999988887632 1236
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEEEC--CCC---ceEEEEecCCCCCCcceEEEcCCCCEEEEEEC------CCcEEE
Q 001336 564 VGVVQFDTTKNRFLAAG-DEFMIKFWDM--DNV---NLLASIDADGGLQASPCIRFNKEGILLAVSTN------DNGIKI 631 (1097)
Q Consensus 564 v~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~------dg~i~i 631 (1097)
+..++|+|+++++++++ .|+.|++|++ .++ +.+..+..+ ..|.+++|+|++.++++++. +..|.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 88999999999999999 8999999999 555 566666654 57899999996433333332 556899
Q ss_pred EEcCCC
Q 001336 632 LANADG 637 (1097)
Q Consensus 632 w~~~~~ 637 (1097)
|.+...
T Consensus 387 ~~~~~~ 392 (450)
T 2vdu_B 387 IEYNLN 392 (450)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 987543
No 112
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.1e-26 Score=265.44 Aligned_cols=278 Identities=13% Similarity=0.093 Sum_probs=225.5
Q ss_pred CeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEE-EEEECCCEEEEEEc
Q 001336 332 QILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF-GVAYSKHIVHLYTY 410 (1097)
Q Consensus 332 ~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l-as~~~dg~i~iwd~ 410 (1097)
++++++++.|+.|++||+.+++.+.. +..| ..+.+++|+|++++| ++++.|+.|++||+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~ 61 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDT 61 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence 36789999999999999999877653 3334 458999999999987 56678999999999
Q ss_pred cCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEE-EE
Q 001336 411 HGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFI-FS 489 (1097)
Q Consensus 411 ~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s 489 (1097)
.+++.+.. +..|. .+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..| ..+.+++|+ ++++.+ ++
T Consensus 62 ~~~~~~~~---~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s--~dg~~l~~~ 133 (391)
T 1l0q_A 62 ATNNVIAT---VPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALS--PDGKKLYVT 133 (391)
T ss_dssp TTTEEEEE---EECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEEC--TTSSEEEEE
T ss_pred CCCeEEEE---EECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEEC--CCCCEEEEE
Confidence 99886553 44344 8999999999994 3456667899999999999998888755 468889884 455666 78
Q ss_pred EcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEE
Q 001336 490 TATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQF 569 (1097)
Q Consensus 490 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~ 569 (1097)
++.|+.|++||+.+.+....+..+ ..+.+++|+|++++++..+. .++.|.+||+.+++.+..+..+. .+..++|
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~ 207 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAV 207 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEE
T ss_pred eCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecCC--CccceEE
Confidence 888999999999987776666554 46789999999998865432 24579999999998888776543 6889999
Q ss_pred cCCCCEEEEEe---CCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEE-EEEECCCcEEEEEcCCCceEEEEec
Q 001336 570 DTTKNRFLAAG---DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL-AVSTNDNGIKILANADGIRLLRTVE 645 (1097)
Q Consensus 570 ~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~ 645 (1097)
+|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.++ +....+.
T Consensus 208 ~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~ 283 (391)
T 1l0q_A 208 NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMA 283 (391)
T ss_dssp CTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred CCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEE
Confidence 99999999988 68999999999999988887642 46899999999877 56688999999999988 6666665
Q ss_pred cc
Q 001336 646 SR 647 (1097)
Q Consensus 646 ~~ 647 (1097)
.+
T Consensus 284 ~~ 285 (391)
T 1l0q_A 284 VG 285 (391)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 113
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=5.1e-27 Score=248.18 Aligned_cols=293 Identities=15% Similarity=0.141 Sum_probs=210.2
Q ss_pred EEEEEEec-CCCcEEEEEEeCCCcEEEEECCCC---ceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCC
Q 001336 429 VNDLAFSY-PNKQLSVVTCGEDRVIKVWDAVTG---TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL 504 (1097)
Q Consensus 429 V~~l~~s~-d~~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 504 (1097)
+.++.|-. ..+...+++++. ..|++|+..++ ++++++.+|+.+|..+.+.++..+-..++-+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence 56666644 344445666665 68999999999 8999999999999999987655432222211
Q ss_pred CceeeecCCCCceEEEEEccC----CCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEe
Q 001336 505 GSRVDYDAPGHSSTMMAYSAD----GARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG 580 (1097)
Q Consensus 505 ~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 580 (1097)
..+...|.+++++|+ ++.+++++. .+.+|++. +++.+.+++
T Consensus 108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~-----------------------~g~lv~ss~ 152 (356)
T 2w18_A 108 ------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLT-----------------------KRRLVSSSG 152 (356)
T ss_dssp ------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEET-----------------------TTEEEEEES
T ss_pred ------cccccceEEEEECCCccccccEEEeCCC------eEEEEecC-----------------------CCcEEEecc
Confidence 123447889999999 889998763 26666532 333344432
Q ss_pred --CCCcEEEEEC-CCCceEEEEecCCCCCCcceEEEcC---CCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccc
Q 001336 581 --DEFMIKFWDM-DNVNLLASIDADGGLQASPCIRFNK---EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRV 654 (1097)
Q Consensus 581 --~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 654 (1097)
.|+.|++|++ .+|+.+..+..| ...+..++|++ ++.+|++++.|++|+|||+.++ +.++.+.++..
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s~~~~--~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~----- 224 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKENQFLM--PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS----- 224 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEEEEEC--CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC------
T ss_pred cCCCCcEEEEEECCCCceeeeeccC--CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc-----
Confidence 5888888888 447777777766 55788899999 7799999999999999999998 66666643210
Q ss_pred cccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccC
Q 001336 655 ASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLP 734 (1097)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 734 (1097)
T Consensus 225 -------------------------------------------------------------------------------- 224 (356)
T 2w18_A 225 -------------------------------------------------------------------------------- 224 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEE
Q 001336 735 DNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFAL 814 (1097)
Q Consensus 735 ~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~ 814 (1097)
+...+.+++|+|+|+++++++.+.. +
T Consensus 225 ---~v~~v~~vafSpdG~~lvs~s~~~~--~------------------------------------------------- 250 (356)
T 2w18_A 225 ---YQASVCHKAYSEMGLLFIVLSHPCA--K------------------------------------------------- 250 (356)
T ss_dssp -----CCCEEEEEEETTEEEEEEC--------------------------------------------------------
T ss_pred ---ceeeeEEEEECCCCCEEEEeccCCC--c-------------------------------------------------
Confidence 2235778899999998887775311 1
Q ss_pred ccCCCEEEEEe-CCeEEEEEcCCCceeEEe-----CCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecc
Q 001336 815 SKNDSYVMSAS-GGKISLFNMMTFKTMTTF-----MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG 888 (1097)
Q Consensus 815 s~dg~~la~~s-dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~ 888 (1097)
..+++|+ |++|++||..+++++..+ .+|...+.+..+ ++.++|+|+.|++|+|||+.+++++.++.+
T Consensus 251 ----w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~g 323 (356)
T 2w18_A 251 ----ESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPP 323 (356)
T ss_dssp -----------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred ----ceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecC
Confidence 1456777 899999999999987765 366665554444 367999999999999999999999999999
Q ss_pred cccCeE-EEEEecCCCEEEEEeCCCcEEEEEc
Q 001336 889 HQKRIT-GLAFSNTLNVLVSSGADSQLCVWST 919 (1097)
Q Consensus 889 h~~~V~-~l~~s~dg~~l~s~~~Dg~i~iwd~ 919 (1097)
|...+. .++|||||++|++|+.|++|+|||+
T Consensus 324 H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 324 VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 988765 5899999999999999999999996
No 114
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.9e-27 Score=266.70 Aligned_cols=240 Identities=11% Similarity=0.155 Sum_probs=188.6
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001336 377 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 456 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 456 (1097)
..+|...|++++|+|||++||+|+.++ ++||++.+++.... .+...+..++|.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS-----QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE-----EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee-----eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 467999999999999999999998776 78999988654432 22235788899998884 346788899999999
Q ss_pred CCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCC-CceeeecCCCCceEEEEEccCCCEEEEeeeC
Q 001336 457 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSADGARLFSCGTN 535 (1097)
Q Consensus 457 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 535 (1097)
+.+++++..+. |...|.+++++ ++ .++.+ .|+.|++||+.+. +....+.. ....+++++ .++++++.
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~--~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg- 155 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLS--RE--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNE- 155 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEEC--SS--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEES-
T ss_pred CCCCcEEEEEE-CCCceEEEEEc--CC--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCC-
Confidence 99999999887 67789999884 33 34443 4789999999877 44444333 444566777 66776522
Q ss_pred CCCCceEEEEeCCCCe----------------eeEEecCCCCcceEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceEEE
Q 001336 536 KEGESYLVEWNESEGA----------------VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM-IKFWDMDNVNLLAS 598 (1097)
Q Consensus 536 ~~~~~~i~~wd~~~~~----------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~ 598 (1097)
..++.|++||+.++. .+..+.+|.. .|.+++|+|++++|++++.|++ |++||+.+++.+..
T Consensus 156 -~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~ 233 (355)
T 3vu4_A 156 -FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE 233 (355)
T ss_dssp -SCTTCEEEEECCC------------------CCEEECCCSS-CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred -CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC-ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 224579999999865 2678888887 9999999999999999999998 99999999999999
Q ss_pred EecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 599 IDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 599 ~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
+....+...|.+++|+|++.+|++++.|++|++||+..+
T Consensus 234 ~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 234 FRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 973123678999999999999999999999999999765
No 115
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.1e-26 Score=269.54 Aligned_cols=235 Identities=14% Similarity=0.073 Sum_probs=192.9
Q ss_pred CCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeee--eeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001336 382 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHL--EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 459 (1097)
Q Consensus 382 ~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~--~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~ 459 (1097)
..+.+++|+|++.++++++.++.|++||+.+++...... .+.+|...|.+++|++++. ++++++.|+.|++||+.+
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence 456699999988888888889999999999988654221 2458999999999999998 899999999999999999
Q ss_pred CceeEEeecCCcCeEEEeecccCCccEE-EEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCC-
Q 001336 460 GTKQYIFEGHESPVYSICPHHKENIQFI-FSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE- 537 (1097)
Q Consensus 460 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~- 537 (1097)
++.+..+..|...+.+++|++ ++..+ ++++.|+.|++||+++++....+.. ...+.+++|+|+++++++++.+..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASN 277 (433)
T ss_dssp CCEEEEEECSSSSEEEEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCT
T ss_pred ceEEEEEcCCCCCeeEEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCc
Confidence 999999999999999999954 45666 5666899999999987766555544 446899999999999998875332
Q ss_pred ---CCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEE
Q 001336 538 ---GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF 613 (1097)
Q Consensus 538 ---~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 613 (1097)
.++.|++||+.+++.+..+.. .. .+..++|+|+++.+ ++++.|+.|++||+.+++.+..+.. ...+.+++|
T Consensus 278 ~~~~dg~i~~~d~~~~~~~~~~~~-~~-~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~---~~~~~~~~~ 352 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKLIDTIGP-PG-NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV---FDKPNTIAL 352 (433)
T ss_dssp TCSCCEEEEEEETTTTEEEEEEEE-EE-CEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC---SSSEEEEEE
T ss_pred cccCCCeEEEEECCCCcEEeeccC-CC-CcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC---CCCCCeEEE
Confidence 256899999999988776632 22 67889999999766 4557999999999999998888863 446889999
Q ss_pred cCCCCEEEEEECC
Q 001336 614 NKEGILLAVSTND 626 (1097)
Q Consensus 614 s~~~~~l~s~~~d 626 (1097)
+|+++++++++.+
T Consensus 353 s~dg~~l~~~~~~ 365 (433)
T 3bws_A 353 SPDGKYLYVSCRG 365 (433)
T ss_dssp CTTSSEEEEEECC
T ss_pred cCCCCEEEEEecC
Confidence 9999999888763
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=4.2e-26 Score=260.57 Aligned_cols=328 Identities=10% Similarity=0.110 Sum_probs=252.6
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEE-EEEcCCCeEEEEEcCCCCceeeecCCCCceEEE
Q 001336 442 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFI-FSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM 520 (1097)
Q Consensus 442 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 520 (1097)
++++++.|+.|++||+.+++.+..+..|.. +.+++|+ +++.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s--~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVIS--PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEEC--TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEEC--CCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 789999999999999999999999987754 8899984 555665 778899999999999887776666554 89999
Q ss_pred EEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEE
Q 001336 521 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMDNVNLLASI 599 (1097)
Q Consensus 521 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~ 599 (1097)
+|+|++++|++++.+ +..|++||+.+++.+..+..+. .+..++|+|+++.+ ++++.++.|++||+.+++.+..+
T Consensus 80 ~~spdg~~l~~~~~~---~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMA---SSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp EECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEECC---CCEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 999999998776532 4579999999999988887654 67899999999987 57778999999999999998888
Q ss_pred ecCCCCCCcceEEEcCCCCEE-EEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccc
Q 001336 600 DADGGLQASPCIRFNKEGILL-AVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTS 678 (1097)
Q Consensus 600 ~~~~~~~~v~~v~~s~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1097)
..+ ..+.+++|+|+++.+ ++++.++.|++||+.++ +....+.
T Consensus 155 ~~~---~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~--------------------------------- 197 (391)
T 1l0q_A 155 SVG---RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK--------------------------------- 197 (391)
T ss_dssp ECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE---------------------------------
T ss_pred ecC---CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe---------------------------------
Confidence 754 346899999999877 56778899999998765 1111100
Q ss_pred cccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeec
Q 001336 679 LGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA 758 (1097)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~ 758 (1097)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe----CCeEEEEEc
Q 001336 759 SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS----GGKISLFNM 834 (1097)
Q Consensus 759 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s----dg~i~iwd~ 834 (1097)
+...+.+++|+|+|++|++++ ++.|++||+
T Consensus 198 ----------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 198 ----------------------------------------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp ----------------------------------------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred ----------------------------------------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence 223455677777777776664 578999999
Q ss_pred CCCceeEEeCCCCCCeEEEEEeCCCCCEE-EEEECCCcEEEEEcccceEEEEecccccCeE---EEE------------E
Q 001336 835 MTFKTMTTFMPPPPAATFLAFHPQDNNII-AIGMEDSSIQIYNVRVDEVKTKLKGHQKRIT---GLA------------F 898 (1097)
Q Consensus 835 ~~~~~~~~~~~~~~~i~~l~~sp~~~~~l-a~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~---~l~------------~ 898 (1097)
.+++.+..+..+. .+.+++|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+. |
T Consensus 232 ~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~f 309 (391)
T 1l0q_A 232 GTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADF 309 (391)
T ss_dssp TTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCE
T ss_pred CCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccccc
Confidence 8888888887654 588999999 77766 6778899999999999999988877765432 122 3
Q ss_pred ecCC----------CEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE
Q 001336 899 SNTL----------NVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA 957 (1097)
Q Consensus 899 s~dg----------~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~ 957 (1097)
+.+. ..+...+.|..+++|++..+... . .......|+++|.|.+.
T Consensus 310 s~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~------~--------~~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 310 KSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS------K--------KQNPTHTYSETGIYTVR 364 (391)
T ss_dssp EESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE------C--------SSSCEECCSSCEEEEEE
T ss_pred ccccccccccccceEEEEeCCCCceEEEEECCCCccc------C--------cCCCeEEeCCCceEEEE
Confidence 2221 34556667889999999875521 0 11234679999998876
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1.3e-27 Score=276.00 Aligned_cols=267 Identities=13% Similarity=0.233 Sum_probs=214.9
Q ss_pred eEEEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEc
Q 001336 311 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 390 (1097)
Q Consensus 311 ~~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 390 (1097)
.....+.|.+.|++++|+|++..++|+|+.||.|+|||+........ ..........+.+|...|.+++|+
T Consensus 120 ~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~ 190 (430)
T 2xyi_A 120 EIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWN 190 (430)
T ss_dssp EEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEEC
T ss_pred EEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeC
Confidence 34566779999999999998666889999999999999986211000 000000111267899999999999
Q ss_pred cCCC-EEEEEECCCEEEEEEccCCee----eeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC---ce
Q 001336 391 PDGT-LFGVAYSKHIVHLYTYHGGDE----LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG---TK 462 (1097)
Q Consensus 391 pd~~-~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~---~~ 462 (1097)
|++. +|++|+.||.|++|++.++.. +.....+.+|...|.+++|+|++.. +|++++.|+.|++||++++ +.
T Consensus 191 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~ 269 (430)
T 2xyi_A 191 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKP 269 (430)
T ss_dssp TTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSC
T ss_pred CCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcc
Confidence 9998 999999999999999987432 2223457789999999999995444 8999999999999999987 67
Q ss_pred eEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCC-CCceeeecCCCCceEEEEEccCCC-EEEEeeeCCCCCc
Q 001336 463 QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN-LGSRVDYDAPGHSSTMMAYSADGA-RLFSCGTNKEGES 540 (1097)
Q Consensus 463 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~ 540 (1097)
+..+..|...|.+++|++... .++++|+.||.|++||++. ......+..+...|.+++|+|+++ ++++++.+ +
T Consensus 270 ~~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d----~ 344 (430)
T 2xyi_A 270 SHTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD----R 344 (430)
T ss_dssp SEEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETT----S
T ss_pred eeEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCC----C
Confidence 788889999999999965432 4799999999999999997 445667777888999999999996 57777654 4
Q ss_pred eEEEEeCCC--------------CeeeEEecCCCCcceEEEEEcCCCC-EEEEEeCCCcEEEEECCCC
Q 001336 541 YLVEWNESE--------------GAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNV 593 (1097)
Q Consensus 541 ~i~~wd~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 593 (1097)
.|++||+.. .+.+..+.+|.. .|..++|+|++. ++++++.||.|++|++...
T Consensus 345 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cEEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 699999987 356677777776 899999999998 8999999999999998754
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=9.1e-27 Score=270.13 Aligned_cols=295 Identities=9% Similarity=0.060 Sum_probs=240.8
Q ss_pred ceEEEEeecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEE
Q 001336 310 KTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 389 (1097)
Q Consensus 310 ~~~~~~~~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 389 (1097)
...+..+.....+.+++|+| +..++++++.++.|.+||+.+++.+.... ...+.+|...|.+++|
T Consensus 113 ~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~~~~~~~v~~~~~ 177 (433)
T 3bws_A 113 HRFISRFKTGFQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSP--------------PEKYKKKLGFVETISI 177 (433)
T ss_dssp EEEEEEEECSSCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECC--------------CHHHHTTCCEEEEEEE
T ss_pred ceEEEEEcCCCCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecC--------------cccccccCCceeEEEE
Confidence 35666777777788999999 55577888999999999999987664211 1124579999999999
Q ss_pred ccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecC
Q 001336 390 SPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH 469 (1097)
Q Consensus 390 spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 469 (1097)
+|+++++++++.|+.|++||+.+++.+. .+..|...+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+
T Consensus 178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 253 (433)
T 3bws_A 178 PEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDRKTKLEIRKTDKI 253 (433)
T ss_dssp GGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEETTTTEEEEECCCC
T ss_pred cCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEECCCCcEEEEecCC
Confidence 9999999999999999999999987655 46689999999999999994 3456668999999999999998888765
Q ss_pred CcCeEEEeecccCCccEEEEEc--------CCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCce
Q 001336 470 ESPVYSICPHHKENIQFIFSTA--------TDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 541 (1097)
Q Consensus 470 ~~~v~~~~~~~~~~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 541 (1097)
. .+.+++| +++++.+++++ .|+.|++||+.+++..... .+...+.+++|+|+++.+++.+. .++.
T Consensus 254 ~-~~~~~~~--~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~---~~~~ 326 (433)
T 3bws_A 254 G-LPRGLLL--SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDM---CCSK 326 (433)
T ss_dssp S-EEEEEEE--CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEET---TTTE
T ss_pred C-CceEEEE--cCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEec---CCCE
Confidence 4 4888888 55667888887 5889999999876654444 23347889999999987766542 2557
Q ss_pred EEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeC---------------CCcEEEEECCCCceEEEEecCCCCC
Q 001336 542 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD---------------EFMIKFWDMDNVNLLASIDADGGLQ 606 (1097)
Q Consensus 542 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~ 606 (1097)
|.+||+.+++.+..+... ..+..++|+|+++++++++. ||.|++||+.+++.+..+..+ .
T Consensus 327 v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~---~ 401 (433)
T 3bws_A 327 IEVYDLKEKKVQKSIPVF--DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG---N 401 (433)
T ss_dssp EEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS---S
T ss_pred EEEEECCCCcEEEEecCC--CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC---C
Confidence 999999999888887633 37889999999999998885 579999999999999888753 3
Q ss_pred CcceEEEcCCCCEEEEEEC-CCcEEEEEcC
Q 001336 607 ASPCIRFNKEGILLAVSTN-DNGIKILANA 635 (1097)
Q Consensus 607 ~v~~v~~s~~~~~l~s~~~-dg~i~iw~~~ 635 (1097)
.+.+++|+|++++|++++. |+.|++|++.
T Consensus 402 ~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 402 QPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 6889999999999998875 9999999975
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.6e-27 Score=267.25 Aligned_cols=281 Identities=15% Similarity=0.143 Sum_probs=214.4
Q ss_pred EEEee-cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc
Q 001336 313 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 391 (1097)
Q Consensus 313 ~~~~~-h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 391 (1097)
+.++. |...|++++|+|||++ ||+|+.+| ++|||+.+++..... +...+..+++++
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~-la~g~~~~-~~iw~~~~~~~~~~~---------------------~~~~~~~~~~~~ 68 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSC-LILSTLKS-FEIYNVHPVAHIMSQ---------------------EMRHLSKVRMLH 68 (355)
T ss_dssp -------CCCCCEEEECTTSSE-EEEECSSE-EEEEEETTEEEEEEE---------------------ECSCCCEEEECT
T ss_pred ccccccCCCceEEEEECCCCCE-EEEEcCCE-EEEEecCCcceeeee---------------------ecCCeEEEEEcC
Confidence 33444 8999999999999994 57888775 789999887655421 122588899999
Q ss_pred CCCEEE-EEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC-ceeEEeecC
Q 001336 392 DGTLFG-VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGH 469 (1097)
Q Consensus 392 d~~~la-s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h 469 (1097)
++++++ +++.|++|+|||+.+++.+.. +. |...|.+++|+++. ++.+ .|+.|++||+.++ +.+..+..
T Consensus 69 ~~~~~~~~~~~d~~v~iWd~~~~~~~~~---~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~- 138 (355)
T 3vu4_A 69 RTNYVAFVTGVKEVVHIWDDVKKQDVSR---IK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR- 138 (355)
T ss_dssp TSSEEEEECSSTTEEEEEETTTTEEEEE---EE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE-
T ss_pred CCCEEEEEECCccEEEEEECCCCcEEEE---EE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc-
Confidence 988884 577889999999999987663 43 67799999998764 3333 4789999999998 77776665
Q ss_pred CcCeEEEeecccCCccEEEE--EcCCCeEEEEEcCCCC----------------ceeeecCCCCceEEEEEccCCCEEEE
Q 001336 470 ESPVYSICPHHKENIQFIFS--TATDGKIKAWLYDNLG----------------SRVDYDAPGHSSTMMAYSADGARLFS 531 (1097)
Q Consensus 470 ~~~v~~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~v~~~~~s~~~~~l~~ 531 (1097)
+...+++++ .+++. |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|++
T Consensus 139 --~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s 212 (355)
T 3vu4_A 139 --FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVAT 212 (355)
T ss_dssp --EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEE
T ss_pred --CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEE
Confidence 333344443 34555 6899999999998755 15667788889999999999999999
Q ss_pred eeeCCCCCce-EEEEeCCCCeeeEEec-C-CCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE--EEE-------
Q 001336 532 CGTNKEGESY-LVEWNESEGAVKRTYH-G-LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL--ASI------- 599 (1097)
Q Consensus 532 ~~~~~~~~~~-i~~wd~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~------- 599 (1097)
++.| +. |++||+++++.+..+. + |.. .|.+++|+|++++|++++.|+.|++||+..+... ..+
T Consensus 213 ~s~d----~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~ 287 (355)
T 3vu4_A 213 CSQD----GTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMK 287 (355)
T ss_dssp EETT----CSEEEEEETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECC
T ss_pred EeCC----CCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecc
Confidence 9864 46 9999999999999998 5 554 9999999999999999999999999999765321 111
Q ss_pred -----------ec-CCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 600 -----------DA-DGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 600 -----------~~-~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
.. .........++|++++..+++++.||.+++|++..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 288 YFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 00 011223467999999999999999999999998654
No 120
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=6e-27 Score=247.64 Aligned_cols=221 Identities=7% Similarity=0.099 Sum_probs=167.8
Q ss_pred CCCCeeEEEEccC----CCEEEEEeCCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEE--CCCcEEEEEc-
Q 001336 805 PEDAVPCFALSKN----DSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM--EDSSIQIYNV- 877 (1097)
Q Consensus 805 h~~~v~~l~~s~d----g~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~--~dg~v~vwd~- 877 (1097)
+...|.+++|+|| ++++++++ ..+++|++. +++++.+++ .|+.|++|++
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g-~~~~v~~l~-----------------------~g~lv~ss~~g~d~~V~~~~~s 165 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSG-NIKAVLGLT-----------------------KRRLVSSSGTLSDQQVEVMTFA 165 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEE-EEEEEEEET-----------------------TTEEEEEESSSTTCEEEEEEEC
T ss_pred cccceEEEEECCCccccccEEEeCC-CeEEEEecC-----------------------CCcEEEecccCCCCcEEEEEEC
Confidence 5678999999999 99999877 337778653 344444432 4777777777
Q ss_pred ccceEEEEecccccCeEEEEEec---CCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcE
Q 001336 878 RVDEVKTKLKGHQKRITGLAFSN---TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTH 954 (1097)
Q Consensus 878 ~~~~~~~~l~~h~~~V~~l~~s~---dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 954 (1097)
.+|+.+..+.+|...++.++|++ ++..|++++.|++|+|||+++++... ...++......+.+++|+|||.+
T Consensus 166 ~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~-----tL~g~~~~v~~v~~vafSpdG~~ 240 (356)
T 2w18_A 166 EDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLK-----KMHIDDSYQASVCHKAYSEMGLL 240 (356)
T ss_dssp TTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEE-----EEECCC---CCCEEEEEEETTEE
T ss_pred CCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEE-----EEcCCCcceeeeEEEEECCCCCE
Confidence 44777777889999999999999 78999999999999999999987332 22333222246788899999998
Q ss_pred EEE-------------EeCCeEEEEeCCCcceeeeee---ccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCcee
Q 001336 955 LLA-------------VHETQIAIYEAPKLECLKQFV---PREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLR 1018 (1097)
Q Consensus 955 l~~-------------~~d~~v~vwd~~~~~~~~~~~---~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~ 1018 (1097)
+++ +.|++|++||..+++.+..+. ..+|...+.+..++ +.++++++.|++|+|||+.+++.+
T Consensus 241 lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l 318 (356)
T 2w18_A 241 FIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCT 318 (356)
T ss_dssp EEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEE
T ss_pred EEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEE
Confidence 743 367899999999998876553 34777776655555 889999999999999999999999
Q ss_pred eeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecC
Q 001336 1019 CRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1065 (1097)
Q Consensus 1019 ~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~ 1065 (1097)
..+. +|...+.. .++|+| |+.+|++|+.|++|++||+.
T Consensus 319 ~tL~-------gH~~~vvs-~vafSP-DG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 319 ALLP-------PVSDQHWS-FVKWSG-TDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp EEEC-------CC--CCCC-EEEECS-SSSEEEEECTTSCEEEEEEC
T ss_pred EEec-------CCCCCeEE-EEEECC-CCCEEEEEECCCcEEEecCC
Confidence 8887 56666553 248999 79999999999999999963
No 121
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=6.9e-27 Score=270.03 Aligned_cols=252 Identities=17% Similarity=0.264 Sum_probs=211.6
Q ss_pred cCCCCCCeEEEEEccC-CCEEEEEECCCEEEEEEccCC-------eeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeC
Q 001336 377 SSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGG-------DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE 448 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd-~~~las~~~dg~i~iwd~~~~-------~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~ 448 (1097)
..+|.+.|++++|+|+ +.+||+++.||.|++|++.+. ........+.+|...|.+++|+|++.. +|++|+.
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~~ 202 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSASD 202 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEECT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEeC
Confidence 5679999999999997 789999999999999999861 112233458899999999999999886 6999999
Q ss_pred CCcEEEEECCCCce-------eEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCC---CceeeecCCCCceE
Q 001336 449 DRVIKVWDAVTGTK-------QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL---GSRVDYDAPGHSST 518 (1097)
Q Consensus 449 d~~i~iwd~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~ 518 (1097)
||.|++||+.++.. ...+.+|...|.+++|++. ++.++++++.||.|++||+++. .....+..+...|.
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 99999999987432 4567789999999999763 3479999999999999999976 45556667888999
Q ss_pred EEEEccCCC-EEEEeeeCCCCCceEEEEeCCC-CeeeEEecCCCCcceEEEEEcCCCC-EEEEEeCCCcEEEEECCC---
Q 001336 519 MMAYSADGA-RLFSCGTNKEGESYLVEWNESE-GAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDN--- 592 (1097)
Q Consensus 519 ~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~--- 592 (1097)
+++|+|++. ++++++. ++.|++||+++ ...+..+.+|.. .|.+++|+|+++ +|++++.||.|++||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp EEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred EEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 999999998 5667765 44799999998 567888888876 899999999985 688999999999999987
Q ss_pred -----------CceEEEEecCCCCCCcceEEEcCCCC-EEEEEECCCcEEEEEcCCC
Q 001336 593 -----------VNLLASIDADGGLQASPCIRFNKEGI-LLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 593 -----------~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~~~dg~i~iw~~~~~ 637 (1097)
.+++..... +...|.+++|+|++. +|++++.||.|++|++...
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 357 EQSTEDAEDGPPELLFIHGG--HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCCHHHHHHCCTTEEEECCC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccCccccccCCcceEEEcCC--CCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 245555554 467899999999998 9999999999999998764
No 122
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-26 Score=269.95 Aligned_cols=242 Identities=13% Similarity=0.082 Sum_probs=203.3
Q ss_pred CCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeee--------------------------------------
Q 001336 382 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE-------------------------------------- 423 (1097)
Q Consensus 382 ~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~-------------------------------------- 423 (1097)
.++.+++|+|||++|+++ .++.|++||+.+|+.......+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478999999999966665 57899999999998222222222
Q ss_pred ----------------cccCcEEEEEEecCCCcEE-EEEEeCCCcEEEEECC--CCceeEEee--cCCcCeEEEeecccC
Q 001336 424 ----------------AHVGSVNDLAFSYPNKQLS-VVTCGEDRVIKVWDAV--TGTKQYIFE--GHESPVYSICPHHKE 482 (1097)
Q Consensus 424 ----------------~h~~~V~~l~~s~d~~~~~-l~s~s~d~~i~iwd~~--~~~~~~~~~--~h~~~v~~~~~~~~~ 482 (1097)
+|.+.|++++|+|+++ + +++++.|+.|++||+. +++++..+. .|...|.+++| .+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~--sp 159 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISI--AE 159 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSS--EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEE--CT
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCC--EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEE--cC
Confidence 3445799999999999 5 4899999999999999 888888886 56789999999 45
Q ss_pred CccEEEEEcCCCeEEEEEcCCCCcee----eecCCCCceEEEEEccC---CCEEEEeeeCCCCCceEEEEeCCCCeeeEE
Q 001336 483 NIQFIFSTATDGKIKAWLYDNLGSRV----DYDAPGHSSTMMAYSAD---GARLFSCGTNKEGESYLVEWNESEGAVKRT 555 (1097)
Q Consensus 483 ~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~s~~---~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 555 (1097)
++.+|++++.+|.|++|++.+..... .+..+...|.+++|+|+ +++|++++.++ .|++||+.+++.+..
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~----~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE----HIKISHYPQCFIVDK 235 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS----CEEEEEESCTTCEEE
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCC----cEEEEECCCCceeee
Confidence 66899999999999999998766543 55667789999999999 99999998654 699999999988887
Q ss_pred -ecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-----------------------CCCCCcceE
Q 001336 556 -YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-----------------------GGLQASPCI 611 (1097)
Q Consensus 556 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~~v 611 (1097)
+.+|.. .|.+++|+ ++++|++++.|+.|++||+.+++++..+..+ .....|.++
T Consensus 236 ~~~~h~~-~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 313 (450)
T 2vdu_B 236 WLFGHKH-FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI 313 (450)
T ss_dssp ECCCCSS-CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred eecCCCC-ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence 446665 89999999 9999999999999999999999998888632 123468899
Q ss_pred EEcCCCCEEEEEE-CCCcEEEEEc
Q 001336 612 RFNKEGILLAVST-NDNGIKILAN 634 (1097)
Q Consensus 612 ~~s~~~~~l~s~~-~dg~i~iw~~ 634 (1097)
+|+|++.+|++++ .|+.|++|++
T Consensus 314 ~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 314 IKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEe
Confidence 9999999999999 8999999998
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-27 Score=265.74 Aligned_cols=280 Identities=10% Similarity=0.065 Sum_probs=217.4
Q ss_pred EEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecC
Q 001336 433 AFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA 512 (1097)
Q Consensus 433 ~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 512 (1097)
.+.+++. ++++|+.||.|++||+.+++.+..+. ...|.++.+++. +++++.|++|++|+.+.
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~--------- 104 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN--------- 104 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence 4445666 89999999999999999999988887 466777777543 99999999999998653
Q ss_pred CCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcC--CCCEEEEEeCCCcEEEEEC
Q 001336 513 PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT--TKNRFLAAGDEFMIKFWDM 590 (1097)
Q Consensus 513 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~ 590 (1097)
.+.+||..+++.++.+...+...|.+++|+| +++++++++.||.|++||+
T Consensus 105 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~ 156 (343)
T 3lrv_A 105 ----------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY 156 (343)
T ss_dssp ----------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEES
T ss_pred ----------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEEC
Confidence 2677888888877766633334899999999 9999999999999999999
Q ss_pred CCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCccccccc
Q 001336 591 DNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGS 670 (1097)
Q Consensus 591 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1097)
.+++.+.....+ +...+.+++|+|++.+|++|+.||.|++||+.++......+
T Consensus 157 ~~~~~~~~~~~~-~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~-------------------------- 209 (343)
T 3lrv_A 157 EDDSQYIVHSAK-SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRF-------------------------- 209 (343)
T ss_dssp SSSCEEEEECCC-SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEEC--------------------------
T ss_pred CCCcEEEEEecC-CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEE--------------------------
Confidence 999987666433 24469999999999999999999999999987651100000
Q ss_pred CccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccC
Q 001336 671 ANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS 750 (1097)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 750 (1097)
T Consensus 210 -------------------------------------------------------------------------------- 209 (343)
T 3lrv_A 210 -------------------------------------------------------------------------------- 209 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEE
Q 001336 751 GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKIS 830 (1097)
Q Consensus 751 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sdg~i~ 830 (1097)
.+ +|...|.+++|+|+|.+|+++++++|+
T Consensus 210 --------------------------------------------------~~-~h~~~v~~l~fs~~g~~l~s~~~~~v~ 238 (343)
T 3lrv_A 210 --------------------------------------------------PV-DEEAKIKEVKFADNGYWMVVECDQTVV 238 (343)
T ss_dssp --------------------------------------------------CC-CTTSCEEEEEECTTSSEEEEEESSBEE
T ss_pred --------------------------------------------------ec-cCCCCEEEEEEeCCCCEEEEEeCCeEE
Confidence 00 167788888899999888888877899
Q ss_pred EEEcCCCceeEEeCC---CCCCe--EEEEEeCCCCCEEEEEEC-CCcEEEEEcccceEEEEecccccCeEEEEEec---C
Q 001336 831 LFNMMTFKTMTTFMP---PPPAA--TFLAFHPQDNNIIAIGME-DSSIQIYNVRVDEVKTKLKGHQKRITGLAFSN---T 901 (1097)
Q Consensus 831 iwd~~~~~~~~~~~~---~~~~i--~~l~~sp~~~~~la~g~~-dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~---d 901 (1097)
+||+.+++.+..+.. |...+ .+++|+| ++++|++++. |+.|+||++.+....... .++..++|++ +
T Consensus 239 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~ 313 (343)
T 3lrv_A 239 CFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTAD 313 (343)
T ss_dssp EEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CC
T ss_pred EEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccc
Confidence 999988877655543 33333 4699999 8999999998 999999999765432222 5678888988 8
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 001336 902 LNVLVSSGADSQLCVWSTDG 921 (1097)
Q Consensus 902 g~~l~s~~~Dg~i~iwd~~~ 921 (1097)
...+++++.|+.+.++-...
T Consensus 314 ~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 314 FTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp CCEEEEEEETTEEEEEEECS
T ss_pred cceeEEEecCCceEEEEecC
Confidence 89999999999999886554
No 124
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-27 Score=295.77 Aligned_cols=254 Identities=15% Similarity=0.259 Sum_probs=214.9
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecC--CCcEEEEEEeCCCcEE
Q 001336 376 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIK 453 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~ 453 (1097)
++.+|.+.|++++|+|++++|++|+.||.|+|||+.++.. .....+.+|.++|++++|+++ ++ +|++|+.||.|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 3789999999999999999999999999999999985432 333468899999999999988 77 899999999999
Q ss_pred EEECCCCc--eeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCC--ceeeecCCCCceEEEEEcc-----
Q 001336 454 VWDAVTGT--KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG--SRVDYDAPGHSSTMMAYSA----- 524 (1097)
Q Consensus 454 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~----- 524 (1097)
+||+.+++ .+..+.+|...|.+++|+++.++..+++|+.||.|++||++... ....+..+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999987 77788899999999999766436899999999999999998763 3445667778999999999
Q ss_pred --------CCCEEEEeeeCCCCCceEEEEeCCCC----eeeEEecCCCCcceEEEEEcCC---CCEEEEEeCCCcEEEEE
Q 001336 525 --------DGARLFSCGTNKEGESYLVEWNESEG----AVKRTYHGLGKRSVGVVQFDTT---KNRFLAAGDEFMIKFWD 589 (1097)
Q Consensus 525 --------~~~~l~~~~~~~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd 589 (1097)
++.++++++.++ .|++||++++ .....+.+|.. .|.+++|+|+ +.++++++.||.|++||
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg----~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADN----LVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ------CGGGCCEEEEETTS----CEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccCCCCCEEEEEECCC----eEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 589999998654 6999999877 56677888876 8999999999 89999999999999999
Q ss_pred CCCCceE---EEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 590 MDNVNLL---ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 590 ~~~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
+.+++.. .......+...|.+++|+|++.++++++.||.|++|++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9886421 11222345678999999999999999999999999999865
No 125
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.4e-27 Score=293.36 Aligned_cols=258 Identities=10% Similarity=0.084 Sum_probs=215.5
Q ss_pred CCCCeeEEEEccCCCEEEEEe-CCeEEEEEcC--CCceeEEeCCCCCCeEEEEEeCCC--CCEEEEEECCCcEEEEEccc
Q 001336 805 PEDAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMTTFMPPPPAATFLAFHPQD--NNIIAIGMEDSSIQIYNVRV 879 (1097)
Q Consensus 805 h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~~--~~~la~g~~dg~v~vwd~~~ 879 (1097)
|.+.|++++|+|+|++|++++ ||+|+|||+. +++.+..+.+|...|++++|+| + +++|++|+.||.|++||+.+
T Consensus 8 H~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEEEEET
T ss_pred CcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEEECCC
Confidence 999999999999999999999 9999999998 5678888999999999999998 6 89999999999999999999
Q ss_pred ce--EEEEecccccCeEEEEEecC--CCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcC-----
Q 001336 880 DE--VKTKLKGHQKRITGLAFSNT--LNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHL----- 950 (1097)
Q Consensus 880 ~~--~~~~l~~h~~~V~~l~~s~d--g~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~----- 950 (1097)
++ .+..+.+|...|++++|+|+ +..+++++.||.|++||+..+........ .++. ..|.+++|+|
T Consensus 87 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~---~~~~---~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII---DAHA---IGVNSASWAPATIEE 160 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE---ECCS---SCEEEEEECCCC---
T ss_pred CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe---ecCC---CceEEEEecCccccc
Confidence 87 77888999999999999999 99999999999999999988643322222 2232 5799999999
Q ss_pred --------CCcEEEE-EeCCeEEEEeCCCcc----eeeeeeccCCCCCEEEEEEecC---CCEEEEEecCCeEEEEeCCC
Q 001336 951 --------DQTHLLA-VHETQIAIYEAPKLE----CLKQFVPREASGPITHATYSCD---SQSIYVAFEEGSVGVLTAST 1014 (1097)
Q Consensus 951 --------dg~~l~~-~~d~~v~vwd~~~~~----~~~~~~~~~h~~~v~~v~~s~d---g~~l~s~s~Dg~v~vwd~~~ 1014 (1097)
++.++++ +.||.|++||+.++. ....+ .+|...|++++|+|+ +++|++++.||+|++||+.+
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeee--cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 5888888 579999999998774 33333 489999999999999 99999999999999999998
Q ss_pred CceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCCCcccCCCCCC
Q 001336 1015 LRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPN 1077 (1097)
Q Consensus 1015 ~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~~~~~~~~~~~ 1077 (1097)
+....... .....+|.+.|.++ +|+| ++.+|++|+.||.|++|++...+ .|......
T Consensus 239 ~~~~~~~~--~~~~~~~~~~v~~l--~~sp-dg~~l~s~s~Dg~I~vwd~~~~~-~~~~~~~~ 295 (753)
T 3jro_A 239 EQGPWKKT--LLKEEKFPDVLWRA--SWSL-SGNVLALSGGDNKVTLWKENLEG-KWEPAGEV 295 (753)
T ss_dssp SSSCCBCC--BSSSSCCSSCCCCE--EECT-TTCCEEEECSSSCEECCBCCSSS-CCBCCCCB
T ss_pred CCCcceeE--EeccCCCCCceEEE--EEcC-CCCEEEEEcCCCEEEEEecCCCC-Cccccccc
Confidence 75322211 11223577888877 8889 68999999999999999998543 45554433
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=2.5e-27 Score=269.81 Aligned_cols=307 Identities=11% Similarity=0.074 Sum_probs=202.4
Q ss_pred eecCCCeeEEEE---ccCCCeEEEEEeCCCeEEEEEcCCCcee-----eeeeeeEeeccccCc-----cccccccCCCCC
Q 001336 316 LNQGSAVKSMDF---HPVQQILLVVGTNMGDVMLWEVGSRERI-----AVKSFKVWELGACSM-----PLQASLSSDYTA 382 (1097)
Q Consensus 316 ~~h~~~V~~v~f---spdg~~lla~gs~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~~~~h~~ 382 (1097)
+.-.....++.| +|++..++++| .|+.|.+|+....... .......|....... +........|..
T Consensus 12 lpl~~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (393)
T 4gq1_A 12 LPLNVRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDG 90 (393)
T ss_dssp CCTTCCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----
T ss_pred ecCCCCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCC
Confidence 333455667777 45666676666 4778999986432211 111112222111100 001112334556
Q ss_pred CeEEEEEccCCCEEEEEECCCEEEEEEccCCeeee--eeeeeecccCcEEEEEEec--------CCCcEEEEEEeCCCcE
Q 001336 383 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELR--NHLEIEAHVGSVNDLAFSY--------PNKQLSVVTCGEDRVI 452 (1097)
Q Consensus 383 ~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~--~~~~l~~h~~~V~~l~~s~--------d~~~~~l~s~s~d~~i 452 (1097)
.+....+++++.+||+|+.|++|+|||+.+++... ....+.||.+.|.+++|+| |++ +|+||+.|++|
T Consensus 91 ~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv 168 (393)
T 4gq1_A 91 DGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTL 168 (393)
T ss_dssp ------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEE
T ss_pred CcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeE
Confidence 66666777788999999999999999999987543 2335789999999999998 777 89999999999
Q ss_pred EEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeee----------------------
Q 001336 453 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY---------------------- 510 (1097)
Q Consensus 453 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------------------- 510 (1097)
+|||+.++.++..+.+|...|.+++|+|.. ..+|++++.|++|++||+++.......
T Consensus 169 ~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 169 IIWRLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp EEEEEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred EEEECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 999999999888888999999999996542 258999999999999999876543221
Q ss_pred ---cCCCCceEEEEEc-cCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEE------------------E
Q 001336 511 ---DAPGHSSTMMAYS-ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVV------------------Q 568 (1097)
Q Consensus 511 ---~~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~------------------~ 568 (1097)
..+...+.++.|+ ++++.+++++.+ +.+++||+..+.....+..+.. .+..+ .
T Consensus 248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d----~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 322 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGSDGSGILAMCKS----GAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGAC 322 (393)
T ss_dssp ----CCSSSCSEEEEETTTTCEEEEECTT----SEEEEEEC--------------------CCSCSEEEECSSCCSSCCE
T ss_pred eecccccccceeeeeecCCCCEEEEEeCC----CCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEE
Confidence 2344467888886 899999998764 4799999988876666654432 22222 2
Q ss_pred EcC--CCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001336 569 FDT--TKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 634 (1097)
Q Consensus 569 ~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~ 634 (1097)
+++ ++.++++|+.||.|++||..+++.+..+..+ ...|.+++|+|+|++||+++++| +.+|.+
T Consensus 323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~--~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 323 PHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQL--GMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp ECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEEC--SSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCC--CCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 333 2335666779999999999999988887755 56899999999999999999776 556654
No 127
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7e-27 Score=261.28 Aligned_cols=268 Identities=8% Similarity=0.039 Sum_probs=211.3
Q ss_pred EccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCCEEE
Q 001336 327 FHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVH 406 (1097)
Q Consensus 327 fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~ 406 (1097)
+.+++. ++++|+.||.|+|||+.+++.+... . ...|.++.|+|+ +++++.|++|+
T Consensus 44 ~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~~-------------------~--~~~v~~~~~~~~---~~s~s~D~~i~ 98 (343)
T 3lrv_A 44 MYYDKW-VCMCRCEDGALHFTQLKDSKTITTI-------------------T--TPNPRTGGEHPA---IISRGPCNRLL 98 (343)
T ss_dssp SSEEEE-EEEEEEETTEEEEEEESSSSCEEEE-------------------E--EECCCTTCCCCS---EEEECSTTEEE
T ss_pred hcCCCC-EEEEECCCCcEEEEECCCCcEEEEE-------------------e--cCCceeeeeCCc---eEEecCCCeEE
Confidence 345665 6799999999999999999876531 1 346778888888 99999999999
Q ss_pred EEEcc---------CCeeeeeeeeeecccCcEEEEEEec--CCCcEEEEEEeCCCcEEEEECCCCceeEEee-cCCcCeE
Q 001336 407 LYTYH---------GGDELRNHLEIEAHVGSVNDLAFSY--PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-GHESPVY 474 (1097)
Q Consensus 407 iwd~~---------~~~~~~~~~~l~~h~~~V~~l~~s~--d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~h~~~v~ 474 (1097)
+|+.. +++.+.. ...+|.+.|.+++|+| +++ ++++++.|++|++||+.+++++..+. .|...|.
T Consensus 99 ~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~ 174 (343)
T 3lrv_A 99 LLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYS 174 (343)
T ss_dssp EEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCC
T ss_pred EEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceE
Confidence 99765 3332322 1236778999999999 999 89999999999999999999977664 4566899
Q ss_pred EEeecccCCccEEEEEcCCCeEEEEEcCCCCce-eeecC-CCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCee
Q 001336 475 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSR-VDYDA-PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV 552 (1097)
Q Consensus 475 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 552 (1097)
+++|+ +++.+|++|+.||.|++||+++.... ..+.. |...|.+++|+|++.+|++++. + .|++||+++++.
T Consensus 175 ~~~~~--pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~----~v~iwd~~~~~~ 247 (343)
T 3lrv_A 175 SGVLH--KDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-Q----TVVCFDLRKDVG 247 (343)
T ss_dssp EEEEC--TTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-S----BEEEEETTSSTT
T ss_pred EEEEC--CCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-C----eEEEEEcCCCCc
Confidence 99994 56789999999999999999998877 66776 7889999999999999999983 2 699999999877
Q ss_pred eEEecC---CCCcce--EEEEEcCCCCEEEEEeC-CCcEEEEECCCCceEEEEecCCCCCCcceEEEcC---CCCEEEEE
Q 001336 553 KRTYHG---LGKRSV--GVVQFDTTKNRFLAAGD-EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK---EGILLAVS 623 (1097)
Q Consensus 553 ~~~~~~---~~~~~v--~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~s~ 623 (1097)
+..+.. +.. .+ .+++|+|++++|++++. |+.|++|++.++...... ..+..++|.+ +...++++
T Consensus 248 ~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~ 320 (343)
T 3lrv_A 248 TLAYPTYTIPEF-KTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVV 320 (343)
T ss_dssp CBSSCCCBC------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEE
T ss_pred ceeecccccccc-cccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEE
Confidence 655543 211 22 36999999999999997 999999999766543332 2456788888 88899999
Q ss_pred ECCCcEEEEEcCCC
Q 001336 624 TNDNGIKILANADG 637 (1097)
Q Consensus 624 ~~dg~i~iw~~~~~ 637 (1097)
+.||.+.++-....
T Consensus 321 ~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 321 CGDGGIAAILKTND 334 (343)
T ss_dssp EETTEEEEEEECSS
T ss_pred ecCCceEEEEecCC
Confidence 99999998865443
No 128
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=5e-27 Score=267.32 Aligned_cols=299 Identities=8% Similarity=-0.009 Sum_probs=194.5
Q ss_pred ccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCc-------cccccCCCCCCCCCeeEEEEccCCCE
Q 001336 748 TNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGI-------LMTNDISDTNPEDAVPCFALSKNDSY 820 (1097)
Q Consensus 748 spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~-------~~~~~~~~~~h~~~v~~l~~s~dg~~ 820 (1097)
+|++..+++++.++.|.+|+.........+. .....+..|...... ...... ..|...+....+++++.+
T Consensus 27 ~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 103 (393)
T 4gq1_A 27 SPSCSNLLAIGHDTGITIYCASEEQTPGSTG-LTLQELFTIQTGLPTLHLSFSSSCSYSE--NLHDGDGNVNSSPVYSLF 103 (393)
T ss_dssp SGGGTTEEEEEESSEEEEEEEEECCSSSCCS-EEEEEEEEEECSSCEEEEEECTTCEEEC--C----------CCEEEEE
T ss_pred CCCCCCEEEEECCCCEEEEECCCCCcccccc-cceeeeEEEecCCCeeeEeecCCccccc--cccCCCcceeecCCCCCE
Confidence 5666667777788899999765332111110 000011111111100 000001 125555666677788889
Q ss_pred EEEEe-CCeEEEEEcCCCcee-----EEeCCCCCCeEEEEEeC-------CCCCEEEEEECCCcEEEEEcccceEEEEec
Q 001336 821 VMSAS-GGKISLFNMMTFKTM-----TTFMPPPPAATFLAFHP-------QDNNIIAIGMEDSSIQIYNVRVDEVKTKLK 887 (1097)
Q Consensus 821 la~~s-dg~i~iwd~~~~~~~-----~~~~~~~~~i~~l~~sp-------~~~~~la~g~~dg~v~vwd~~~~~~~~~l~ 887 (1097)
|++++ |++|+|||..++++. ..+.+|.+.|.+++|+| .++++||+|+.|++|+|||+.++..+..+.
T Consensus 104 las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~ 183 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY 183 (393)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE
T ss_pred EEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec
Confidence 99999 999999999887653 34678999999999986 267899999999999999999988888888
Q ss_pred ccccCeEEEEEecCCC-EEEEEeCCCcEEEEEcCCCcccceeeE--------------------eecCCCCCCccCCeEE
Q 001336 888 GHQKRITGLAFSNTLN-VLVSSGADSQLCVWSTDGWEKQASKFL--------------------TIPNGRTASALADTRV 946 (1097)
Q Consensus 888 ~h~~~V~~l~~s~dg~-~l~s~~~Dg~i~iwd~~~~~~~~~~~~--------------------~~~~~~~~~~~~v~~l 946 (1097)
+|..+|.+++|+|++. +|++++.|++|++||+.+++....... ....++ ...+.++
T Consensus 184 ~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~---~~~v~~v 260 (393)
T 4gq1_A 184 PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGI---ASSLANV 260 (393)
T ss_dssp ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CC---SSSCSEE
T ss_pred CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccc---cccceee
Confidence 8999999999999874 799999999999999988653221100 001122 2568888
Q ss_pred EEc-CCCcEEEEE-eCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEec--------------------CCCEEEEEecC
Q 001336 947 QFH-LDQTHLLAV-HETQIAIYEAPKLECLKQFVPREASGPITHATYSC--------------------DSQSIYVAFEE 1004 (1097)
Q Consensus 947 ~~s-~dg~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~--------------------dg~~l~s~s~D 1004 (1097)
.|+ +|++.|+++ .|+++++||+.+++....+. .|...+..+.+++ ++.++++|+.|
T Consensus 261 ~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~D 338 (393)
T 4gq1_A 261 RWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS--DSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQH 338 (393)
T ss_dssp EEETTTTCEEEEECTTSEEEEEEC---------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTT
T ss_pred eeecCCCCEEEEEeCCCCEEEEECccCCCCceEe--eecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCC
Confidence 886 899999984 88999999999887665554 4444444443333 44567888899
Q ss_pred CeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecC
Q 001336 1005 GSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1065 (1097)
Q Consensus 1005 g~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~ 1065 (1097)
|+|++||+.+++...... +|...|.++ +|+| ||++|++++.|| +.+|.+.
T Consensus 339 g~V~lwd~~~~~~~~~~~-------~~~~~V~sv--afsp-dG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 339 GLIQLINTYEKDSNSIPI-------QLGMPIVDF--CWHQ-DGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp TEEEEEETTCTTCCEEEE-------ECSSCEEEE--EECT-TSSEEEEEESSE-EEEEEEG
T ss_pred CEEEEEECCCCcEEEEec-------CCCCcEEEE--EEcC-CCCEEEEEeCCC-eEEEEEe
Confidence 999999999988765544 566788876 9999 799999998776 6666654
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=8.2e-25 Score=257.87 Aligned_cols=340 Identities=14% Similarity=0.170 Sum_probs=249.3
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc--CCCceEEEEec
Q 001336 568 QFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN--ADGIRLLRTVE 645 (1097)
Q Consensus 568 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~--~~~~~~~~~~~ 645 (1097)
.++|++..+++++.|+.|.+||..+++++.++... . .+..++|+|+|+++++++.|+.|++||+ .++ +.+..+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g--~-~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~-~~~~~i~ 219 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG--Y-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEP-TKVAEIK 219 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECS--T-TEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-EEEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecC--c-ccceEEECCCCCEEEEECCCCeEEEEECcCCCC-cEEEEEe
Confidence 37888888888889999999999999999998742 2 2779999999999999999999999999 555 3332221
Q ss_pred ccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCC
Q 001336 646 SRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEP 725 (1097)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~ 725 (1097)
T Consensus 220 -------------------------------------------------------------------------------- 219 (543)
T 1nir_A 220 -------------------------------------------------------------------------------- 219 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeEeccCCCcCccceEEEEEcc----CCceeeeecc-CcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccC
Q 001336 726 SQCRSLRLPDNLTAMRVSRLIYTN----SGLAILALAS-NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDI 800 (1097)
Q Consensus 726 ~~~~~~~~~~~~~~~~i~~l~~sp----dg~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 800 (1097)
+...+..++|+| ||+++++++. ++.|.+||..+.+. +.. +.......-...+
T Consensus 220 ------------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~------~~~-----i~~~g~~~~~~~~ 276 (543)
T 1nir_A 220 ------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP------KQI-----VSTRGMTVDTQTY 276 (543)
T ss_dssp ------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE------EEE-----EECCEECSSSCCE
T ss_pred ------------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc------cee-----ecccCcccCcccc
Confidence 123467899999 9999999885 89999997653211 000 0000000000000
Q ss_pred CCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEcCCCceeE--EeCCCCCCeEEEEEeCCCCCEEEEE-ECCCcEEEE
Q 001336 801 SDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMT--TFMPPPPAATFLAFHPQDNNIIAIG-MEDSSIQIY 875 (1097)
Q Consensus 801 ~~~~h~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~~~~~la~g-~~dg~v~vw 875 (1097)
.+...+.++.++|++..+++.. +++|.+||+.+.+.+. .+. +...+..++|+| ++++++++ ..+++|.+|
T Consensus 277 ---~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~ 351 (543)
T 1nir_A 277 ---HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDS-SHRYFMTAANNSNKVAVI 351 (543)
T ss_dssp ---ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECT-TSCEEEEEEGGGTEEEEE
T ss_pred ---ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECC-CCCEEEEEecCCCeEEEE
Confidence 0234789999999887766654 7999999998876544 443 556688899999 88876655 468899999
Q ss_pred EcccceEEEEecc----cccCeEEEEEecC-CCEEEEEe-CCCcEEEEEcCCCc--ccceeeEeecCCCCCCccCCeEEE
Q 001336 876 NVRVDEVKTKLKG----HQKRITGLAFSNT-LNVLVSSG-ADSQLCVWSTDGWE--KQASKFLTIPNGRTASALADTRVQ 947 (1097)
Q Consensus 876 d~~~~~~~~~l~~----h~~~V~~l~~s~d-g~~l~s~~-~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~l~ 947 (1097)
|+.+++++..+.. |.+....+ ++|+ +..++++. .|++|.+||+++.. ....++++...++. ..+..++
T Consensus 352 D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g---~~~~~v~ 427 (543)
T 1nir_A 352 DSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG---GGSLFIK 427 (543)
T ss_dssp ETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC---SCCCCEE
T ss_pred ECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC---CCceEEE
Confidence 9999999888774 66544443 4777 66677765 58999999998721 11123444444433 3467799
Q ss_pred EcCCCcEEEEEe--------CCeEEEEeCCCccee-eeeec------cCCCCCEEEEEEecCCCEEEEEe-----cCCeE
Q 001336 948 FHLDQTHLLAVH--------ETQIAIYEAPKLECL-KQFVP------REASGPITHATYSCDSQSIYVAF-----EEGSV 1007 (1097)
Q Consensus 948 ~s~dg~~l~~~~--------d~~v~vwd~~~~~~~-~~~~~------~~h~~~v~~v~~s~dg~~l~s~s-----~Dg~v 1007 (1097)
|+|||++|+++. +++|.|||+++++.. ..+.. ..|...+..+.|++||+.|+++. .|+.|
T Consensus 428 ~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i 507 (543)
T 1nir_A 428 THPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSAL 507 (543)
T ss_dssp CCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEE
T ss_pred cCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeE
Confidence 999999999964 679999999999887 44321 24578999999999999988763 47999
Q ss_pred EEEeCCCCceeeeeCC
Q 001336 1008 GVLTASTLRLRCRINP 1023 (1097)
Q Consensus 1008 ~vwd~~~~~~~~~~~~ 1023 (1097)
.|||..+++++.++..
T Consensus 508 ~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 508 VVVDDKTLKLKAVVKD 523 (543)
T ss_dssp EEEETTTTEEEEEECC
T ss_pred EEEECCCceEEEeecC
Confidence 9999999999988873
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=5e-25 Score=259.72 Aligned_cols=341 Identities=11% Similarity=0.110 Sum_probs=256.1
Q ss_pred EccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCceEEEE
Q 001336 522 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDM--DNVNLLASI 599 (1097)
Q Consensus 522 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~ 599 (1097)
++|++..+++.+. ++.|.+||..+++++.++.... .+..++|+|+|+++++++.|+.|++||+ .+++.+..+
T Consensus 145 ~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 145 LDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred cCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence 7888887777654 4479999999999999988544 3788999999999999999999999999 888888888
Q ss_pred ecCCCCCCcceEEEcC----CCCEEEEEEC-CCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccc
Q 001336 600 DADGGLQASPCIRFNK----EGILLAVSTN-DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANAN 674 (1097)
Q Consensus 600 ~~~~~~~~v~~v~~s~----~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1097)
.. ...+..++|+| +|+++++++. +++|.+||..++ +.++.+..+.....
T Consensus 219 ~~---g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~-~~~~~i~~~g~~~~---------------------- 272 (543)
T 1nir_A 219 KI---GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVD---------------------- 272 (543)
T ss_dssp EC---CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSS----------------------
T ss_pred ec---CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc-ccceeecccCcccC----------------------
Confidence 74 23568999999 9999999884 899999999887 45554432110000
Q ss_pred cccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCce-
Q 001336 675 VGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLA- 753 (1097)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~- 753 (1097)
... + .....+.++.++|++..
T Consensus 273 ---------------------------------------------------~~~--~-----~~~~~v~~i~~s~~~~~~ 294 (543)
T 1nir_A 273 ---------------------------------------------------TQT--Y-----HPEPRVAAIIASHEHPEF 294 (543)
T ss_dssp ---------------------------------------------------SCC--E-----ESCCCEEEEEECSSSSEE
T ss_pred ---------------------------------------------------ccc--c-----ccCCceEEEEECCCCCEE
Confidence 000 0 02236889999997765
Q ss_pred eeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEE
Q 001336 754 ILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISL 831 (1097)
Q Consensus 754 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s--dg~i~i 831 (1097)
+++...++.|.+||+..... +....+. +...+..++|+|||+++++++ +++|.+
T Consensus 295 ~vs~~~~g~i~vvd~~~~~~---------------------l~~~~i~---~~~~~~~~~~spdg~~l~va~~~~~~v~v 350 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKDIDN---------------------LTVTSIG---AAPFLHDGGWDSSHRYFMTAANNSNKVAV 350 (543)
T ss_dssp EEEETTTTEEEEEECTTSSS---------------------CEEEEEE---CCSSCCCEEECTTSCEEEEEEGGGTEEEE
T ss_pred EEEECCCCeEEEEEecCCCc---------------------ceeEEec---cCcCccCceECCCCCEEEEEecCCCeEEE
Confidence 45566689999998763210 0000111 345677899999999887665 789999
Q ss_pred EEcCCCceeEEeCC----CCCCeEEEEEeCCCCCEEEEEE-CCCcEEEEEccc-------ceEEEEecccccCeEEEEEe
Q 001336 832 FNMMTFKTMTTFMP----PPPAATFLAFHPQDNNIIAIGM-EDSSIQIYNVRV-------DEVKTKLKGHQKRITGLAFS 899 (1097)
Q Consensus 832 wd~~~~~~~~~~~~----~~~~i~~l~~sp~~~~~la~g~-~dg~v~vwd~~~-------~~~~~~l~~h~~~V~~l~~s 899 (1097)
||+.+++++.++.. |.+....+ ++|+++.+++++. .|++|.|||+.+ +++++++.+|.+.+..++|+
T Consensus 351 ~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~ 429 (543)
T 1nir_A 351 IDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH 429 (543)
T ss_dssp EETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC
T ss_pred EECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcC
Confidence 99999999988764 54443333 5774477777775 689999999998 89999999999889999999
Q ss_pred cCCCEEEEEe-------CCCcEEEEEcCCCcccceeeEeecC--CCCCCccCCeEEEEcCCCcEEEEE------eCCeEE
Q 001336 900 NTLNVLVSSG-------ADSQLCVWSTDGWEKQASKFLTIPN--GRTASALADTRVQFHLDQTHLLAV------HETQIA 964 (1097)
Q Consensus 900 ~dg~~l~s~~-------~Dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~v~~l~~s~dg~~l~~~------~d~~v~ 964 (1097)
||+++|++++ .+++|.+||+.+++... ..+.+.. +.......+..+.|+|||++|+++ .++.|.
T Consensus 430 pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~ 508 (543)
T 1nir_A 430 PKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY-QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALV 508 (543)
T ss_dssp TTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCC-EEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEE
T ss_pred CCCCcEEEecCCCCCcccCceEEEEECCCCCCCe-EEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEE
Confidence 9999999987 27799999999977431 1222210 001112468899999999999875 269999
Q ss_pred EEeCCCcceeeeee
Q 001336 965 IYEAPKLECLKQFV 978 (1097)
Q Consensus 965 vwd~~~~~~~~~~~ 978 (1097)
|||.++++++..+.
T Consensus 509 v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 509 VVDDKTLKLKAVVK 522 (543)
T ss_dssp EEETTTTEEEEEEC
T ss_pred EEECCCceEEEeec
Confidence 99999999998876
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=3.8e-24 Score=244.79 Aligned_cols=284 Identities=10% Similarity=0.042 Sum_probs=221.2
Q ss_pred CCeeEEEEccCCCeEEEEEe----CCC----eEEEEEc--CCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEE
Q 001336 320 SAVKSMDFHPVQQILLVVGT----NMG----DVMLWEV--GSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 389 (1097)
Q Consensus 320 ~~V~~v~fspdg~~lla~gs----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 389 (1097)
..|...+|++.|..++++|+ .|| .|+|||+ .+++.+.... +.+|...+..+++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 125 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYAGH 125 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHHHH
Confidence 46778899999988888887 467 9999999 8888664322 4567777777777
Q ss_pred cc--------------CCCEEEEEECC------CEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCC
Q 001336 390 SP--------------DGTLFGVAYSK------HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED 449 (1097)
Q Consensus 390 sp--------------d~~~las~~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d 449 (1097)
++ .+..++.++.+ +.|++||+.++. .+ .+.+|...|.+++|+|||+ .|++++.|
T Consensus 126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~ 199 (415)
T 2hqs_A 126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEECT
T ss_pred HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEec
Confidence 65 26677776654 799999998643 33 4778999999999999999 78888887
Q ss_pred C---cEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEE-EEcCCCe--EEEEEcCCCCceeeecCCCCceEEEEEc
Q 001336 450 R---VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIF-STATDGK--IKAWLYDNLGSRVDYDAPGHSSTMMAYS 523 (1097)
Q Consensus 450 ~---~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s 523 (1097)
+ .|++||+.+++.. .+..|...+.+++| +++|+.|+ +++.++. |++||+++++. ..+..+...+.+++|+
T Consensus 200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~--spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s 275 (415)
T 2hqs_A 200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAF--SPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF 275 (415)
T ss_dssp TSSCEEEEEETTTCCEE-EEECCSSCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC
T ss_pred CCCcEEEEEECCCCcEE-EeecCCCcccCEEE--cCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC
Confidence 5 9999999998875 56678889999999 45667676 6666654 99999987654 4555666789999999
Q ss_pred cCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEEEe
Q 001336 524 ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE---FMIKFWDMDNVNLLASID 600 (1097)
Q Consensus 524 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 600 (1097)
|||++|++++.+ ++...|++||+.+++.. .+..+.. .+..++|+|+|++|++++.+ ..|++||+.+++.. .+.
T Consensus 276 pdg~~l~~~s~~-~g~~~i~~~d~~~~~~~-~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~ 351 (415)
T 2hqs_A 276 PDSQNLAFTSDQ-AGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS 351 (415)
T ss_dssp TTSSEEEEEECT-TSSCEEEEEETTSSCCE-ECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC
T ss_pred CCCCEEEEEECC-CCCcEEEEEECCCCCEE-EEecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec
Confidence 999999988742 34557999999887643 3444443 78889999999999988853 58999999998774 344
Q ss_pred cCCCCCCcceEEEcCCCCEEEEEECCC---cEEEEEcCCC
Q 001336 601 ADGGLQASPCIRFNKEGILLAVSTNDN---GIKILANADG 637 (1097)
Q Consensus 601 ~~~~~~~v~~v~~s~~~~~l~s~~~dg---~i~iw~~~~~ 637 (1097)
.+ . .+.+++|+|+|++|++++.++ .|++|++..+
T Consensus 352 ~~--~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 352 ST--F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp CS--S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred CC--C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 32 2 788999999999999988877 7889987643
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=1.7e-23 Score=260.58 Aligned_cols=304 Identities=13% Similarity=0.056 Sum_probs=212.8
Q ss_pred CCCeeEEEEccCCCeEEEEEeC-CC-----eEEEEEcCCCceeeeeeeeEee-----ccccCccccccccCCCCCCeEEE
Q 001336 319 GSAVKSMDFHPVQQILLVVGTN-MG-----DVMLWEVGSRERIAVKSFKVWE-----LGACSMPLQASLSSDYTASVNRV 387 (1097)
Q Consensus 319 ~~~V~~v~fspdg~~lla~gs~-dg-----~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~h~~~V~~v 387 (1097)
...|.+++|||||++| ++++. |+ .|.+||+.+++........... +...........-......|.++
T Consensus 36 ~~~~~~~~~SpdG~~l-a~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRV-TFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEE-EEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEE-EEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 3468899999999976 55555 88 9999999998764421100000 00000000000000001348899
Q ss_pred EEccCCCEEEEEECCCEEEEEEccCCe--eeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001336 388 MWSPDGTLFGVAYSKHIVHLYTYHGGD--ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI 465 (1097)
Q Consensus 388 ~~spd~~~las~~~dg~i~iwd~~~~~--~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 465 (1097)
+|||||++|++++. +.|++||+.++. .+. .+..|...+.+++|||||+ +|+.++ ++.|++||+.+++....
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence 99999999999987 999999999872 233 3667888999999999999 677776 46999999999887665
Q ss_pred eecCCcC----------------eEEEeecccCCccEEEEEcCCC---------------------------------eE
Q 001336 466 FEGHESP----------------VYSICPHHKENIQFIFSTATDG---------------------------------KI 496 (1097)
Q Consensus 466 ~~~h~~~----------------v~~~~~~~~~~~~~l~s~~~dg---------------------------------~i 496 (1097)
...+... +.+++| ++||++|++++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 5544432 356777 66778888887665 78
Q ss_pred EEEEcCC-CCceeeec--CCCCceEEEEEccCCCEEEEeeeC-CCCCceEEEEeCCCCeeeEEecCCCCc---ceEEEEE
Q 001336 497 KAWLYDN-LGSRVDYD--APGHSSTMMAYSADGARLFSCGTN-KEGESYLVEWNESEGAVKRTYHGLGKR---SVGVVQF 569 (1097)
Q Consensus 497 ~iwd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~-~~~~~~i~~wd~~~~~~~~~~~~~~~~---~v~~~~~ 569 (1097)
.+||+.+ ++...... .+...+..++| |||++|++.+.+ ...+..|.+||+.+++....+..+... .+..++|
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence 8899887 66544332 24457899999 999999987652 334668999999999887777655432 2357899
Q ss_pred cCCCCEEEEEeCCCcEEEEECC-CCceEEEEecCCCCCCcceE-EEcCCCCEEEEE-ECCC--cEEEEEcCC
Q 001336 570 DTTKNRFLAAGDEFMIKFWDMD-NVNLLASIDADGGLQASPCI-RFNKEGILLAVS-TNDN--GIKILANAD 636 (1097)
Q Consensus 570 ~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~s~-~~dg--~i~iw~~~~ 636 (1097)
+|+|+++++++.||.+++|.++ +++ ...+..+ ...+..+ .|+|+++.|+.. +.++ .++||++..
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 9999988888899988888765 344 5555543 4466676 599999877654 4454 889998754
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=2e-22 Score=250.94 Aligned_cols=245 Identities=9% Similarity=0.007 Sum_probs=186.5
Q ss_pred CCCeEEEEEccCCCEEEEEEC-CC-----EEEEEEccCCeeeeeeeeeeccc------------------------CcEE
Q 001336 381 TASVNRVMWSPDGTLFGVAYS-KH-----IVHLYTYHGGDELRNHLEIEAHV------------------------GSVN 430 (1097)
Q Consensus 381 ~~~V~~v~~spd~~~las~~~-dg-----~i~iwd~~~~~~~~~~~~l~~h~------------------------~~V~ 430 (1097)
...|.+++|||||++|++++. |+ .|++||+.+++.... +..+. ..|.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLL---VDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEE---ECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEc---cchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 457999999999999999998 88 999999999875432 33332 2378
Q ss_pred EEEEecCCCcEEEEEEeCCCcEEEEECCCCc--eeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCcee
Q 001336 431 DLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT--KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV 508 (1097)
Q Consensus 431 ~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 508 (1097)
+++|||||+ +|++++. +.|++||+.++. .+..+..|...+.+++| ++||++|++++ ++.|++||+.++....
T Consensus 113 ~~~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~--SPDG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 113 DYQWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKL--SPKGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CCEECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEE--CTTSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred eeEECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccC--CCCCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999 6777776 999999998883 45567778888999998 56778888887 4699999998765443
Q ss_pred eecCCCCc----------------eEEEEEccCCCEEEEeeeCCC-----------------------------CCceEE
Q 001336 509 DYDAPGHS----------------STMMAYSADGARLFSCGTNKE-----------------------------GESYLV 543 (1097)
Q Consensus 509 ~~~~~~~~----------------v~~~~~s~~~~~l~~~~~~~~-----------------------------~~~~i~ 543 (1097)
........ +.+++|||||++|++++.++. ....|.
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 33322221 477999999999999876532 122788
Q ss_pred EEeCCC-CeeeEEecC-CCCcceEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCceEEEEecCCC--CCCcceEEEc
Q 001336 544 EWNESE-GAVKRTYHG-LGKRSVGVVQFDTTKNRFLAAGD-----EFMIKFWDMDNVNLLASIDADGG--LQASPCIRFN 614 (1097)
Q Consensus 544 ~wd~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s 614 (1097)
+||+.+ ++....... .....+..++| |+|++|++++. +..|++||+.+++....+..+.. ...+..++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999988 876555433 22347889999 99999997763 57899999999988777764421 1145689999
Q ss_pred CCCCEEEEEECCCcEEEEEcC
Q 001336 615 KEGILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 615 ~~~~~l~s~~~dg~i~iw~~~ 635 (1097)
|||+++++++.||.++||.+.
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEEC
T ss_pred CCCeEEEEecCCCccEEEEEc
Confidence 999988888888888888654
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=2.4e-22 Score=229.88 Aligned_cols=280 Identities=11% Similarity=0.060 Sum_probs=212.7
Q ss_pred cceeec--CCCCceEE--EEee-cCCCeeEEEEccC--------------CCeEEEEEeC--C---CeEEEEEcCCCcee
Q 001336 300 QSSYST--DDLPKTVV--MTLN-QGSAVKSMDFHPV--------------QQILLVVGTN--M---GDVMLWEVGSRERI 355 (1097)
Q Consensus 300 ~~~~~~--~~~~~~~~--~~~~-h~~~V~~v~fspd--------------g~~lla~gs~--d---g~i~iwd~~~~~~~ 355 (1097)
+..|+. .. .+.+ ..+. |...+..+++++. +.++++++.. + +.|++||+..+...
T Consensus 95 i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~ 172 (415)
T 2hqs_A 95 YQLVDTGGAP--GTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQF 172 (415)
T ss_dssp EEEEECSSST--TCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCE
T ss_pred EEEEeCCCCC--CCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCE
Confidence 455555 33 3333 3344 7778888888862 5556555443 2 79999999854432
Q ss_pred eeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCC---EEEEEEccCCeeeeeeeeeecccCcEEEE
Q 001336 356 AVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH---IVHLYTYHGGDELRNHLEIEAHVGSVNDL 432 (1097)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg---~i~iwd~~~~~~~~~~~~l~~h~~~V~~l 432 (1097)
. +.+|...|.+++|||||++||+++.++ .|++||+.+++.. .+..|...+.++
T Consensus 173 ~--------------------l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~----~l~~~~~~~~~~ 228 (415)
T 2hqs_A 173 V--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAP 228 (415)
T ss_dssp E--------------------EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEE
T ss_pred E--------------------EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE----EeecCCCcccCE
Confidence 1 567889999999999999999999885 9999999998754 266788899999
Q ss_pred EEecCCCcEEEE-EEeCCCc--EEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcC-CC--eEEEEEcCCCCc
Q 001336 433 AFSYPNKQLSVV-TCGEDRV--IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DG--KIKAWLYDNLGS 506 (1097)
Q Consensus 433 ~~s~d~~~~~l~-s~s~d~~--i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~ 506 (1097)
+|+|||+ .|+ +++.|+. |++||+.+++. ..+..|...+.+++| +++|+.|++++. ++ .|.+||+.++..
T Consensus 229 ~~spdg~--~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~--spdg~~l~~~s~~~g~~~i~~~d~~~~~~ 303 (415)
T 2hqs_A 229 AFSPDGS--KLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW--FPDSQNLAFTSDQAGRPQVYKVNINGGAP 303 (415)
T ss_dssp EECTTSS--EEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred EEcCCCC--EEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE--CCCCCEEEEEECCCCCcEEEEEECCCCCE
Confidence 9999999 455 6766654 99999988876 567788899999998 556688887775 45 677778876553
Q ss_pred eeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCC---
Q 001336 507 RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF--- 583 (1097)
Q Consensus 507 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--- 583 (1097)
..+..+...+.+++|+|+|++|++++.+. +...|.+||+.+++.. .+..+. .+..++|+|+|+.|++++.++
T Consensus 304 -~~l~~~~~~~~~~~~spdG~~l~~~~~~~-g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~spdg~~l~~~s~~~~~~ 378 (415)
T 2hqs_A 304 -QRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQ-VLSSTF--LDETPSLAPNGTMVIYSSSQGMGS 378 (415)
T ss_dssp -EECCCSSSEEEEEEECTTSSEEEEEEECS-SCEEEEEEETTTCCEE-ECCCSS--SCEEEEECTTSSEEEEEEEETTEE
T ss_pred -EEEecCCCcccCeEECCCCCEEEEEECcC-CceEEEEEECCCCCEE-EecCCC--CcCCeEEcCCCCEEEEEEcCCCcc
Confidence 33444566888999999999999887642 3568999999988764 454443 788999999999999988666
Q ss_pred cEEEEECCCCceEEEEecCCCCCCcceEEEcCCCC
Q 001336 584 MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI 618 (1097)
Q Consensus 584 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 618 (1097)
.|++||+. +.....+..+ ...|.+++|+|...
T Consensus 379 ~l~~~d~~-g~~~~~l~~~--~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 379 VLNLVSTD-GRFKARLPAT--DGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEEETT-SCCEEECCCS--SSEEEEEEECCCCC
T ss_pred EEEEEECC-CCcEEEeeCC--CCCCcCCccccccc
Confidence 79999987 4556666644 66899999999643
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=3.5e-23 Score=257.04 Aligned_cols=287 Identities=11% Similarity=0.072 Sum_probs=210.6
Q ss_pred CeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCC---CeEEEEEccCCCEEE
Q 001336 321 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTA---SVNRVMWSPDGTLFG 397 (1097)
Q Consensus 321 ~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~v~~spd~~~la 397 (1097)
.+.+++|||||+++ ++ +.||+|++||+.+++.... +.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~~~-~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTEFI-YR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSCBC-CC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCcEE-EE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence 46689999999944 55 7899999999999876542 344544 499999999999999
Q ss_pred EEECC---------CEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeec
Q 001336 398 VAYSK---------HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 468 (1097)
Q Consensus 398 s~~~d---------g~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 468 (1097)
+++.+ +.|.+||+.+++. .......+|...+..++|||||+ .|+.++. +.|++||+.+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99875 7899999999875 33223345666689999999999 6777775 7999999999988776665
Q ss_pred CCcCe------------------EEEeecccCCccEEEEEcCCC----------------------------------eE
Q 001336 469 HESPV------------------YSICPHHKENIQFIFSTATDG----------------------------------KI 496 (1097)
Q Consensus 469 h~~~v------------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i 496 (1097)
+...+ .+++| ++||+.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 54433 67877 66778888887543 79
Q ss_pred EEEEcCCCCceeeecCC------CCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcce----EE
Q 001336 497 KAWLYDNLGSRVDYDAP------GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV----GV 566 (1097)
Q Consensus 497 ~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v----~~ 566 (1097)
++||+.+++....+..+ ...+..++|+|||+++++....+.....|++||+.+++....+..+....+ ..
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence 99999887754444433 457889999999999887765545567899999999987776654432233 36
Q ss_pred EEEcCCCCEEEEE--eCCC------cEEEEE-CCCCce--EEEEecCCCCCCcc-eEEEcCCCCEEEEEECC---CcEEE
Q 001336 567 VQFDTTKNRFLAA--GDEF------MIKFWD-MDNVNL--LASIDADGGLQASP-CIRFNKEGILLAVSTND---NGIKI 631 (1097)
Q Consensus 567 ~~~~~~~~~l~~~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~-~v~~s~~~~~l~s~~~d---g~i~i 631 (1097)
++|+|+|+.|+.. ..++ .|++|| ..+++. ...+... ...+. .++|+|+|+.|+..+.+ +.+++
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 8999999977754 4666 577777 444441 3444321 22333 36999999999876665 78899
Q ss_pred EEcCC
Q 001336 632 LANAD 636 (1097)
Q Consensus 632 w~~~~ 636 (1097)
|++..
T Consensus 389 ~~~~~ 393 (723)
T 1xfd_A 389 YSANT 393 (723)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 98764
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=4.3e-21 Score=213.26 Aligned_cols=280 Identities=10% Similarity=0.058 Sum_probs=206.3
Q ss_pred EEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEEC-CC
Q 001336 325 MDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS-KH 403 (1097)
Q Consensus 325 v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~-dg 403 (1097)
..|.+++.+++++++.++.|.+||..+++.+.. ...+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 467888888899999999999999999887653 22344556 9999999998777766 88
Q ss_pred EEEEEEccCCee-eeeeeeeecccCcEEEEEEecCCCcEEEEEEeCC-C--cEEEEECCCCceeEEeecCCcCeEEEeec
Q 001336 404 IVHLYTYHGGDE-LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-R--VIKVWDAVTGTKQYIFEGHESPVYSICPH 479 (1097)
Q Consensus 404 ~i~iwd~~~~~~-~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d-~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 479 (1097)
.|.+||..+++. .. .+..+..+..+++|+|+|+ +++++..+ + .|.+||+.+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999999875 32 3555666666699999999 56655444 3 8999999999988887654 456888884
Q ss_pred ccCCccEE-EEEcCCCe-EEEEEcCCCCcee----eecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCee-
Q 001336 480 HKENIQFI-FSTATDGK-IKAWLYDNLGSRV----DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV- 552 (1097)
Q Consensus 480 ~~~~~~~l-~s~~~dg~-i~iwd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~- 552 (1097)
++|+++ ++...++. |.+|+++...... ...........++|+|+|+++++++. .+..|.+||+.+++.
T Consensus 137 --pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 137 --PNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENI 211 (331)
T ss_dssp --TTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSC
T ss_pred --CCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCccc
Confidence 555544 45556678 9999998654432 22233456889999999998777653 245799999999887
Q ss_pred --eEEecCCCCcceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce--EEEEecC--CCCCC---cceEEEcCCCCEEEE
Q 001336 553 --KRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNL--LASIDAD--GGLQA---SPCIRFNKEGILLAV 622 (1097)
Q Consensus 553 --~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~--~~~~~---v~~v~~s~~~~~l~s 622 (1097)
+..+.... .+..++|+|+|+++++++ .++.|.+||+.+++. +..+... ..... ...++|+|++++|++
T Consensus 212 ~~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 289 (331)
T 3u4y_A 212 TLLNAVGTNN--LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFI 289 (331)
T ss_dssp EEEEEEECSS--CCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEE
T ss_pred ceeeeccCCC--CCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEE
Confidence 77776542 567899999999877765 678899999999887 4444322 11111 245899999998876
Q ss_pred EEC-CCcEEEEEcCCC
Q 001336 623 STN-DNGIKILANADG 637 (1097)
Q Consensus 623 ~~~-dg~i~iw~~~~~ 637 (1097)
++. ++.|.+|++...
T Consensus 290 ~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 290 SANISRELKVFTISGK 305 (331)
T ss_dssp EETTTTEEEEEETTSC
T ss_pred ecCCCCcEEEEEecCC
Confidence 654 669999999765
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=4e-21 Score=237.57 Aligned_cols=238 Identities=8% Similarity=0.004 Sum_probs=168.3
Q ss_pred CeEEEEEccCCCEEEEEECCCEEEEEEccCCeee-eeeeeeeccc-----------------CcEEEEEEecCCCcEEEE
Q 001336 383 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDEL-RNHLEIEAHV-----------------GSVNDLAFSYPNKQLSVV 444 (1097)
Q Consensus 383 ~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~-~~~~~l~~h~-----------------~~V~~l~~s~d~~~~~l~ 444 (1097)
.+..+.|+ |+.+++++.|+ | +||+.+++.+ .. +..|. ..|.+++|||| + .++
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~ 96 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVV 96 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-T--EEE
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-C--eEE
Confidence 34557888 67778888888 8 9999998752 32 22332 56999999999 5 344
Q ss_pred EEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCC-----CCceeeecCCCCc---
Q 001336 445 TCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN-----LGSRVDYDAPGHS--- 516 (1097)
Q Consensus 445 s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~--- 516 (1097)
.+ .++.|++||+.+++... +..+...+.+++| ++||+.|+++ .|+.|++||+.+ ++...........
T Consensus 97 ~~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 97 LF-TQGGLVGFDMLARKVTY-LFDTNEETASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp EE-ETTEEEEEETTTTEEEE-EECCTTCCTTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred EE-ECCEEEEEECCCCceEE-ccCCcccccCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 44 35999999998887654 4456777888888 5667888885 679999999987 6554433333222
Q ss_pred -----------eEEEEEccCCCEEEEeeeCC-----------------------------CCCceEEEEeCCCCeeeEEe
Q 001336 517 -----------STMMAYSADGARLFSCGTNK-----------------------------EGESYLVEWNESEGAVKRTY 556 (1097)
Q Consensus 517 -----------v~~~~~s~~~~~l~~~~~~~-----------------------------~~~~~i~~wd~~~~~~~~~~ 556 (1097)
+.++.|+|||++|++++.+. ..+..|.+||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 47899999999999987431 23567999999998865554
Q ss_pred cC-CCCcceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceEEEEecCCCC---CCcceEEEcC--CCCEEEEEEC
Q 001336 557 HG-LGKRSVGVVQFDTTKNRFLAAGDEF-----MIKFWDMDNVNLLASIDADGGL---QASPCIRFNK--EGILLAVSTN 625 (1097)
Q Consensus 557 ~~-~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~s~--~~~~l~s~~~ 625 (1097)
.. .....+..++|+|+|+.|++++.++ .|++||+.+++....+...... ..+..++|+| +|+++++++.
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~ 331 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR 331 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc
Confidence 32 2233788999999999999987665 8999999998444333211111 2346789999 9999999988
Q ss_pred CCcEEEEEcC
Q 001336 626 DNGIKILANA 635 (1097)
Q Consensus 626 dg~i~iw~~~ 635 (1097)
|+.++||.+.
T Consensus 332 ~g~~~l~~~~ 341 (706)
T 2z3z_A 332 DGWNHLYLYD 341 (706)
T ss_dssp TSSCEEEEEE
T ss_pred CCccEEEEEE
Confidence 9988888764
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=6.4e-22 Score=245.66 Aligned_cols=273 Identities=12% Similarity=0.050 Sum_probs=186.9
Q ss_pred ceEEEEEccCCceeeeeccC---------cEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeE
Q 001336 741 RVSRLIYTNSGLAILALASN---------AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPC 811 (1097)
Q Consensus 741 ~i~~l~~spdg~~l~~~~~d---------g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~ 811 (1097)
.|.+++|||||++|++++.+ +.+.+||+ .+++...... ...+...+..
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~----------------------~~~~~~~l~~-~~~~~~~~~~ 118 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI----------------------PHGDPQSLDP-PEVSNAKLQY 118 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES----------------------SSCCCEECCC-TTCCSCCCSB
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEEC----------------------CCCceEeccC-Cccccccccc
Confidence 46789999999999998775 55666654 4444321111 1125556889
Q ss_pred EEEccCCCEEEEEeCCeEEEEEcCCCceeEEeCCCCCCe------------------EEEEEeCCCCCEEEEEECCC---
Q 001336 812 FALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAA------------------TFLAFHPQDNNIIAIGMEDS--- 870 (1097)
Q Consensus 812 l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i------------------~~l~~sp~~~~~la~g~~dg--- 870 (1097)
++|||||++||.++++.|++||+.+++.......+...+ .+++||| |++.|++++.|+
T Consensus 119 ~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~ 197 (723)
T 1xfd_A 119 AGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRV 197 (723)
T ss_dssp CCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTS
T ss_pred cEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCcc
Confidence 999999999999999999999999988877666544433 7899999 899999887553
Q ss_pred -------------------------------cEEEEEcccceEEEEeccc------ccCeEEEEEecCCCEEEEEeC---
Q 001336 871 -------------------------------SIQIYNVRVDEVKTKLKGH------QKRITGLAFSNTLNVLVSSGA--- 910 (1097)
Q Consensus 871 -------------------------------~v~vwd~~~~~~~~~l~~h------~~~V~~l~~s~dg~~l~s~~~--- 910 (1097)
.|++||+.+++....+..| ...+..++|||||++|++.+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 277 (723)
T 1xfd_A 198 PIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ 277 (723)
T ss_dssp CEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS
T ss_pred ceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCC
Confidence 7999999988865666654 677899999999999877653
Q ss_pred -CCcEEEEEcCCCcccceeeEeecCCCCCCccCC----eEEEEcCCCcEEEE--E-eCC------eEEEEe-CCCcce--
Q 001336 911 -DSQLCVWSTDGWEKQASKFLTIPNGRTASALAD----TRVQFHLDQTHLLA--V-HET------QIAIYE-APKLEC-- 973 (1097)
Q Consensus 911 -Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v----~~l~~s~dg~~l~~--~-~d~------~v~vwd-~~~~~~-- 973 (1097)
+..|++||+.+++.... +... +. ..+ ..++|||||+.|+. + .++ .|++|| ..+++.
T Consensus 278 ~~~~i~~~d~~~g~~~~~--~~~~--~~---~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 350 (723)
T 1xfd_A 278 NVSILTLCDATTGVCTKK--HEDE--SE---AWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDN 350 (723)
T ss_dssp CEEEEEEEETTTCCEEEE--EEEE--CS---SCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCC
T ss_pred CeEEEEEEeCCCCcceEE--EEec--cC---CEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccc
Confidence 35799999998763321 1111 11 112 37899999997775 2 455 577777 344441
Q ss_pred eeeeeccCCCCCEEE-EEEecCCCEEEEEecC---CeEEEEeCCCCc--eeeeeCCCCcCCCCCCCceeeEEEEEcCCCC
Q 001336 974 LKQFVPREASGPITH-ATYSCDSQSIYVAFEE---GSVGVLTASTLR--LRCRINPTAYLPTNPSLRVYPLVIAGNPTDP 1047 (1097)
Q Consensus 974 ~~~~~~~~h~~~v~~-v~~s~dg~~l~s~s~D---g~v~vwd~~~~~--~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~ 1047 (1097)
...+. .+...+.. ++|||||++|+..+.+ +.+++|++.... ....+... ..|...+..+ +|+| |+
T Consensus 351 ~~~l~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~----~~~~~~~~~~--~~sp-dg 421 (723)
T 1xfd_A 351 IQSIT--SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD----LVENCTYFSA--SFSH-SM 421 (723)
T ss_dssp CCBSC--CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT----SSSSCCCCEE--EECT-TS
T ss_pred eeEee--cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceeccc----ccCCCCeEEE--EECC-CC
Confidence 44443 22344554 6999999999866655 789999986532 22222210 0144556655 8899 56
Q ss_pred CEEEEE
Q 001336 1048 NQFALG 1053 (1097)
Q Consensus 1048 ~~l~s~ 1053 (1097)
+.|+..
T Consensus 422 ~~l~~~ 427 (723)
T 1xfd_A 422 DFFLLK 427 (723)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 666553
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=4.7e-21 Score=237.00 Aligned_cols=244 Identities=10% Similarity=0.095 Sum_probs=172.2
Q ss_pred CCeeEEEEccCCCEEEEEeCCeEEEEEcCC-----CceeEEeCCCCCC--------------eEEEEEeCCCCCEEEEEE
Q 001336 807 DAVPCFALSKNDSYVMSASGGKISLFNMMT-----FKTMTTFMPPPPA--------------ATFLAFHPQDNNIIAIGM 867 (1097)
Q Consensus 807 ~~v~~l~~s~dg~~la~~sdg~i~iwd~~~-----~~~~~~~~~~~~~--------------i~~l~~sp~~~~~la~g~ 867 (1097)
..+..++|||||++|+++.++.|++||+.+ ++.......+... +.+++||| |+++|++++
T Consensus 121 ~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~ 199 (706)
T 2z3z_A 121 EETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYR 199 (706)
T ss_dssp TCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEE
T ss_pred ccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEE
Confidence 335557788888888887788888888877 6665544433332 48999999 899999987
Q ss_pred ---------------------------------CCCcEEEEEcccceEEEEec--ccccCeEEEEEecCCCEEEEEeCCC
Q 001336 868 ---------------------------------EDSSIQIYNVRVDEVKTKLK--GHQKRITGLAFSNTLNVLVSSGADS 912 (1097)
Q Consensus 868 ---------------------------------~dg~v~vwd~~~~~~~~~l~--~h~~~V~~l~~s~dg~~l~s~~~Dg 912 (1097)
.+..|++||+.+++...... .|...+.+++|+|||+.|++++.|+
T Consensus 200 ~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 279 (706)
T 2z3z_A 200 MDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNR 279 (706)
T ss_dssp EECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECT
T ss_pred ECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCC
Confidence 44689999999988655442 4677899999999999999988776
Q ss_pred -----cEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcC--CCcEEEEE-eCCeEEEEeCC-CcceeeeeeccCCC
Q 001336 913 -----QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHL--DQTHLLAV-HETQIAIYEAP-KLECLKQFVPREAS 983 (1097)
Q Consensus 913 -----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--dg~~l~~~-~d~~v~vwd~~-~~~~~~~~~~~~h~ 983 (1097)
.|++||+.+++... .+.. .........+..++|+| ||++++++ .++.+++|+++ +++.+..+. .|.
T Consensus 280 ~~~~~~v~~~d~~~g~~~~--~~~~-~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~--~~~ 354 (706)
T 2z3z_A 280 AQNECKVNAYDAETGRFVR--TLFV-ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT--KGE 354 (706)
T ss_dssp TSCEEEEEEEETTTCCEEE--EEEE-EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC--CSS
T ss_pred CCCeeEEEEEECCCCceee--EEEE-ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC--CCC
Confidence 89999999873211 1111 11111112246789999 99988876 66788888876 566666665 566
Q ss_pred CCEEE-EEEecCCCEEEEEecC-C----eEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecC-
Q 001336 984 GPITH-ATYSCDSQSIYVAFEE-G----SVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTD- 1056 (1097)
Q Consensus 984 ~~v~~-v~~s~dg~~l~s~s~D-g----~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~D- 1056 (1097)
..+.. ++|+|||+.|+.++.+ + .|..||+.+++.. .+. |...+.. ++|+| |+++++..+.+
T Consensus 355 ~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~--------~~~~~~~--~~~sp-dg~~l~~~~~~~ 422 (706)
T 2z3z_A 355 WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK-DLT--------PESGMHR--TQLSP-DGSAIIDIFQSP 422 (706)
T ss_dssp SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE-ESC--------CSSSEEE--EEECT-TSSEEEEEEECS
T ss_pred eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce-ecc--------CCCceEE--EEECC-CCCEEEEEecCC
Confidence 77877 8999999988765554 4 6777787776532 222 2344664 48999 67777765443
Q ss_pred ---CcEEEEecCCCC
Q 001336 1057 ---GGVYIIEPLEAE 1068 (1097)
Q Consensus 1057 ---g~v~~W~~~~~~ 1068 (1097)
+.|++||+...+
T Consensus 423 ~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 423 TVPRKVTVTNIGKGS 437 (706)
T ss_dssp SCSCEEEEEESSSCE
T ss_pred CCCcEEEEEECCCCe
Confidence 469999997665
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=1.7e-20 Score=210.46 Aligned_cols=279 Identities=11% Similarity=0.082 Sum_probs=217.0
Q ss_pred EEEeecCCCeeEEEEccCCCeEEEEEeC------CCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEE
Q 001336 313 VMTLNQGSAVKSMDFHPVQQILLVVGTN------MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNR 386 (1097)
Q Consensus 313 ~~~~~h~~~V~~v~fspdg~~lla~gs~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 386 (1097)
+........+..++|+|+|++++++... ++.|.+||..+++.+.... ....+..
T Consensus 34 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~ 93 (353)
T 3vgz_A 34 MLRKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFG 93 (353)
T ss_dssp EEEEEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCS
T ss_pred hhhhhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcce
Confidence 3344566788999999999988666544 7799999999988665311 2234778
Q ss_pred EEEccCCCEEEEE-ECCCEEEEEEccCCeeeeeeeeeecccC---------cEEEEEEecCCCcEEEEEE--eCCCcEEE
Q 001336 387 VMWSPDGTLFGVA-YSKHIVHLYTYHGGDELRNHLEIEAHVG---------SVNDLAFSYPNKQLSVVTC--GEDRVIKV 454 (1097)
Q Consensus 387 v~~spd~~~las~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~---------~V~~l~~s~d~~~~~l~s~--s~d~~i~i 454 (1097)
++|+|+|++++++ ..++.|.+||..+++.+.. +..+.. .+.+++|+|+++. ++++ +.++.|.+
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGR---LVLDDRKRTEEVRPLQPRELVADDATNT--VYISGIGKESVIWV 168 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEE---EESCCCCCCSSCCCCEEEEEEEETTTTE--EEEEEESSSCEEEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEE---EecCCCccccccCCCCCceEEECCCCCE--EEEEecCCCceEEE
Confidence 9999999966655 4579999999999886553 333322 2789999999994 4444 35889999
Q ss_pred EECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecC----CCCceEEEEEccCCCEEE
Q 001336 455 WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA----PGHSSTMMAYSADGARLF 530 (1097)
Q Consensus 455 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~ 530 (1097)
||+.+++.+..+..+...+.+++| +++|+.+++++.++.|.+||..+.+....+.. +...+..++|+|++++++
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~--s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 246 (353)
T 3vgz_A 169 VDGGNIKLKTAIQNTGKMSTGLAL--DSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAF 246 (353)
T ss_dssp EETTTTEEEEEECCCCTTCCCCEE--ETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred EcCCCCceEEEecCCCCccceEEE--CCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence 999999999888766666788888 55668899999999999999998777665554 344678899999999887
Q ss_pred EeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCcc
Q 001336 531 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASP 609 (1097)
Q Consensus 531 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 609 (1097)
++.. ....|.+||..+++.+..+..... ..++|+|+++++++++ .++.|.+||..+++.+..+... ..+.
T Consensus 247 ~~~~---~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~ 317 (353)
T 3vgz_A 247 ITDS---KAAEVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP---THPN 317 (353)
T ss_dssp EEES---SSSEEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC---SEEE
T ss_pred EEeC---CCCEEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC---CCCC
Confidence 7763 245799999999998888775432 4589999999777666 7899999999999998888653 2568
Q ss_pred eEEEcCCCCEEEEEECCC
Q 001336 610 CIRFNKEGILLAVSTNDN 627 (1097)
Q Consensus 610 ~v~~s~~~~~l~s~~~dg 627 (1097)
+++|+|+|++++++..++
T Consensus 318 ~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 318 SLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEECTTSCEEEEEEECC
T ss_pred eEEEcCCCCEEEEEEccc
Confidence 999999999887776654
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=1.8e-20 Score=208.18 Aligned_cols=289 Identities=12% Similarity=0.048 Sum_probs=198.7
Q ss_pred EEccCCce-eeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEE
Q 001336 746 IYTNSGLA-ILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSA 824 (1097)
Q Consensus 746 ~~spdg~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~ 824 (1097)
.|.+++.. +++.+.++.|.+||.. +++...... . +...+ .++|+|||++++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~----------------------~~~~~~~~~-~--~~~~~-~~~~s~dg~~l~~~ 57 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTD----------------------TLEILNQIT-L--GYDFV-DTAITSDCSNVVVT 57 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETT----------------------TCCEEEEEE-C--CCCEE-EEEECSSSCEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCc----------------------ccceeeeEE-c--cCCcc-eEEEcCCCCEEEEE
Confidence 45555554 6667778999998654 333322211 1 34555 99999999977776
Q ss_pred e--CCeEEEEEcCCCce-eEEeCCCCCCeEEEEEeCCCCCEEEEEECCC---cEEEEEcccceEEEEecccccCeEEEEE
Q 001336 825 S--GGKISLFNMMTFKT-MTTFMPPPPAATFLAFHPQDNNIIAIGMEDS---SIQIYNVRVDEVKTKLKGHQKRITGLAF 898 (1097)
Q Consensus 825 s--dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg---~v~vwd~~~~~~~~~l~~h~~~V~~l~~ 898 (1097)
+ ++.|.+||+.+++. ...+..+.....+++|+| ++++|+++..++ .|++||+.+++.+..+..+. ...+++|
T Consensus 58 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~ 135 (331)
T 3u4y_A 58 SDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAI 135 (331)
T ss_dssp ESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEE
T ss_pred eCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEE
Confidence 6 68999999999987 777766666666699999 888888655553 89999999999888776544 4689999
Q ss_pred ecCCCEEE-EEeCCCc-EEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE--eCCeEEEEeCCCcce-
Q 001336 899 SNTLNVLV-SSGADSQ-LCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLEC- 973 (1097)
Q Consensus 899 s~dg~~l~-s~~~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~--~d~~v~vwd~~~~~~- 973 (1097)
+|||++|+ +...++. |.+|++................ ......++|+|||++|+++ .++.|.+||+.+++.
T Consensus 136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 136 SPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG----GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI 211 (331)
T ss_dssp CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS----SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC
T ss_pred CCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC----CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc
Confidence 99998555 4456688 9999998643211110111111 1346899999999977764 578999999999988
Q ss_pred --eeeeeccCCCCCEEEEEEecCCCEEEEEe-cCCeEEEEeCCCCce--eeeeCCCCcCCCCCCCceeeEEEEEcCCCCC
Q 001336 974 --LKQFVPREASGPITHATYSCDSQSIYVAF-EEGSVGVLTASTLRL--RCRINPTAYLPTNPSLRVYPLVIAGNPTDPN 1048 (1097)
Q Consensus 974 --~~~~~~~~h~~~v~~v~~s~dg~~l~s~s-~Dg~v~vwd~~~~~~--~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~ 1048 (1097)
+..+. +...+..++|+|||++|++++ .++.|.+||+.+++. +..+................ ++|+| +++
T Consensus 212 ~~~~~~~---~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~sp-dg~ 285 (331)
T 3u4y_A 212 TLLNAVG---TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQ--MALNK-TET 285 (331)
T ss_dssp EEEEEEE---CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCC--EEECT-TSS
T ss_pred ceeeecc---CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccc--eEECC-CCC
Confidence 66665 246778999999999876555 478899999999887 33222111010110111122 48899 566
Q ss_pred EE-EEEecCCcEEEEecCCCCcccC
Q 001336 1049 QF-ALGLTDGGVYIIEPLEAEGRWG 1072 (1097)
Q Consensus 1049 ~l-~s~~~Dg~v~~W~~~~~~~~~~ 1072 (1097)
+| +++..++.|.+||+......+.
T Consensus 286 ~l~v~~~~~~~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 286 KLFISANISRELKVFTISGKVVGYV 310 (331)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEC
T ss_pred EEEEecCCCCcEEEEEecCCcccce
Confidence 65 4555567999999987665443
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=6e-20 Score=205.07 Aligned_cols=274 Identities=12% Similarity=0.145 Sum_probs=192.8
Q ss_pred CCeEEEEEeCCCeEEEEEcCC-CceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECC-CEEEEE
Q 001336 331 QQILLVVGTNMGDVMLWEVGS-RERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK-HIVHLY 408 (1097)
Q Consensus 331 g~~lla~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~d-g~i~iw 408 (1097)
+++++++++.|+.|.+||+.. ++..... ...|...+.+++|+|+|++|++++.+ +.|.+|
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQ------------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEE------------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEee------------------eEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 345667778899999999963 3221111 12366789999999999999999887 999999
Q ss_pred Ecc--CCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEe-CCCcEEEEECC---CCceeEEeecCCcCeEEEeecccC
Q 001336 409 TYH--GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAV---TGTKQYIFEGHESPVYSICPHHKE 482 (1097)
Q Consensus 409 d~~--~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s-~d~~i~iwd~~---~~~~~~~~~~h~~~v~~~~~~~~~ 482 (1097)
++. +++ ......+..+. .+..++|+|+++ +|++++ .++.|.+||+. +++.+..+..+ ..+.+++| ++
T Consensus 66 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~--s~ 138 (343)
T 1ri6_A 66 RIAPDDGA-LTFAAESALPG-SLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANI--SP 138 (343)
T ss_dssp EECTTTCC-EEEEEEEECSS-CCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEE--CT
T ss_pred EecCCCCc-eeeccccccCC-CCcEEEEcCCCC--EEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEE--CC
Confidence 998 554 23333344444 789999999999 555554 58899999994 44455555544 45778888 55
Q ss_pred CccEEEEEc-CCCeEEEEEcCC-CCcee----eec-CCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCC--Cee-
Q 001336 483 NIQFIFSTA-TDGKIKAWLYDN-LGSRV----DYD-APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE--GAV- 552 (1097)
Q Consensus 483 ~~~~l~s~~-~dg~i~iwd~~~-~~~~~----~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~~- 552 (1097)
+|+++++++ .++.|.+||+.+ +.... ... .....+..++|+|+++++++++. .+..|.+|++.. ++.
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCE
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEE
Confidence 667777666 899999999987 33321 222 23447889999999998877652 245799999853 432
Q ss_pred -eEEecCCC-----CcceEEEEEcCCCCEEEEEe-CCCcEEEEECC--CC--ceEEEEecCCCCCCcceEEEcCCCCEEE
Q 001336 553 -KRTYHGLG-----KRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMD--NV--NLLASIDADGGLQASPCIRFNKEGILLA 621 (1097)
Q Consensus 553 -~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 621 (1097)
...+.... ...+..++|+|++++++++. .++.|.+|++. ++ +.+..+..+ . .+..++|+|++++|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~--~-~~~~~~~s~dg~~l~ 292 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE--T-QPRGFNVDHSGKYLI 292 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS--S-SCCCEEECTTSSEEE
T ss_pred EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC--C-ccceEEECCCCCEEE
Confidence 22222111 12466799999999888655 79999999998 33 344445433 2 378999999999888
Q ss_pred EEE-CCCcEEEEEcC
Q 001336 622 VST-NDNGIKILANA 635 (1097)
Q Consensus 622 s~~-~dg~i~iw~~~ 635 (1097)
+++ .++.|.+|++.
T Consensus 293 ~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 293 AAGQKSHHISVYEIV 307 (343)
T ss_dssp EECTTTCEEEEEEEE
T ss_pred EecCCCCeEEEEEEc
Confidence 887 68999999654
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=1.4e-20 Score=210.10 Aligned_cols=280 Identities=10% Similarity=0.118 Sum_probs=192.0
Q ss_pred ccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccC-cEEEEeccCCCCCCccCcccccc
Q 001336 705 KIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN-AVHKLWKWPRNERNSTGKATTNQ 783 (1097)
Q Consensus 705 ~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~ 783 (1097)
+++++.++.|.+|++...........+ .+...+.+++|+|+|++|++++.+ +.+.+|++..
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~------------- 69 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVV-----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP------------- 69 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEE-----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT-------------
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeE-----ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecC-------------
Confidence 344477899999998642111122222 255678899999999988888876 9999998751
Q ss_pred CCcccCCCCCcccc-ccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEc---CCCceeEEeCCCCCCeEEEEEeC
Q 001336 784 APQLWQPPSGILMT-NDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNM---MTFKTMTTFMPPPPAATFLAFHP 857 (1097)
Q Consensus 784 ~~~~w~~~~~~~~~-~~~~~~~h~~~v~~l~~s~dg~~la~~s--dg~i~iwd~---~~~~~~~~~~~~~~~i~~l~~sp 857 (1097)
.++.... ..+. ....+..++|+|+|++|++++ ++.|.+||+ .+.+....+.. ...+.+++|+|
T Consensus 70 -------~~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~ 138 (343)
T 1ri6_A 70 -------DDGALTFAAESA---LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISP 138 (343)
T ss_dssp -------TTCCEEEEEEEE---CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECT
T ss_pred -------CCCceeeccccc---cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECC
Confidence 1222111 0111 123778999999999887776 688999999 44455555553 34689999999
Q ss_pred CCCCEEEEEE-CCCcEEEEEccc-ceEEE----Eecc-cccCeEEEEEecCCCEEEEEe-CCCcEEEEEcCC--Ccccce
Q 001336 858 QDNNIIAIGM-EDSSIQIYNVRV-DEVKT----KLKG-HQKRITGLAFSNTLNVLVSSG-ADSQLCVWSTDG--WEKQAS 927 (1097)
Q Consensus 858 ~~~~~la~g~-~dg~v~vwd~~~-~~~~~----~l~~-h~~~V~~l~~s~dg~~l~s~~-~Dg~i~iwd~~~--~~~~~~ 927 (1097)
+++++++++ .++.|++||+.+ ++... .+.. ....+..++|+|++++|++++ .++.|.+|++.. ++....
T Consensus 139 -dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~ 217 (343)
T 1ri6_A 139 -DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV 217 (343)
T ss_dssp -TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE
T ss_pred -CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE
Confidence 888888777 899999999987 65432 2232 334688999999999776554 789999999954 332222
Q ss_pred eeEeecCCCCCCccCCeEEEEcCCCcEEEEE--eCCeEEEEeCC--Cc--ceeeeeeccCCCCCEEEEEEecCCCEEEEE
Q 001336 928 KFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQIAIYEAP--KL--ECLKQFVPREASGPITHATYSCDSQSIYVA 1001 (1097)
Q Consensus 928 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~--~d~~v~vwd~~--~~--~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~ 1001 (1097)
...............+..++|+|||++|+++ .++.|.+||+. ++ +.+..+. .+. .+.+++|+|||++|+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~-~~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP--TET-QPRGFNVDHSGKYLIAA 294 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE--CSS-SCCCEEECTTSSEEEEE
T ss_pred eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec--CCC-ccceEEECCCCCEEEEe
Confidence 2222111111111346689999999988864 57999999998 33 3444443 223 38899999999998888
Q ss_pred e-cCCeEEEEeC--CCCce
Q 001336 1002 F-EEGSVGVLTA--STLRL 1017 (1097)
Q Consensus 1002 s-~Dg~v~vwd~--~~~~~ 1017 (1097)
+ .++.|.+|++ .++++
T Consensus 295 ~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 295 GQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp CTTTCEEEEEEEETTTTEE
T ss_pred cCCCCeEEEEEEcCCCcee
Confidence 7 5799999954 46643
No 144
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=1.3e-20 Score=205.50 Aligned_cols=257 Identities=13% Similarity=0.117 Sum_probs=189.0
Q ss_pred EEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccC-Cee
Q 001336 337 VGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHG-GDE 415 (1097)
Q Consensus 337 ~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~-~~~ 415 (1097)
.++.|+.|.+||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 34678999999999887643 345788999999999999999987 78999999998 764
Q ss_pred eeeeeeeecc-cCcEEEEEEecCCCcEEEEEEe--CCCcEEE--EECCCCceeEEeecCCcCeEEEeecccCCccEEE-E
Q 001336 416 LRNHLEIEAH-VGSVNDLAFSYPNKQLSVVTCG--EDRVIKV--WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIF-S 489 (1097)
Q Consensus 416 ~~~~~~l~~h-~~~V~~l~~s~d~~~~~l~s~s--~d~~i~i--wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s 489 (1097)
.. ...+| ...|.+++|+|+++ +|++++ .++...| |++.+++ ...+..+. .+..++| +++++.|+ +
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~--spdg~~l~~~ 146 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGW--SPDGKSFTYC 146 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEE--CTTSSEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEE--CCCCCEEEEE
Confidence 43 23344 46789999999999 678877 3344455 5545554 44555444 4888888 45567666 7
Q ss_pred EcCCCeEEEEEcCCC-CceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCC-CCeeeEEecCCCCcceEEE
Q 001336 490 TATDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES-EGAVKRTYHGLGKRSVGVV 567 (1097)
Q Consensus 490 ~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~ 567 (1097)
++.++.+++|+++.. .....+..+...+.+++|+|+++++++++.. +..+.+|++. .+.....+..+.. .+..+
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~ 222 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR---TGQMQIWRVRVDGSSVERITDSAY-GDWFP 222 (297)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT---TSSCEEEEEETTSSCEEECCCCSE-EEEEE
T ss_pred ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC---CCCccEEEECCCCCCcEEEecCCc-ccCCe
Confidence 888999999997543 3344455556689999999999998877632 2245666654 3445566666654 78889
Q ss_pred EEcCCCCEEEEEeCC-----------CcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCC
Q 001336 568 QFDTTKNRFLAAGDE-----------FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 627 (1097)
Q Consensus 568 ~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg 627 (1097)
.|+|++++|++++.+ +.|++||+.+++........++...+.+++|+|+++.|++++.+.
T Consensus 223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 999999999988865 569999999887654443223356789999999999998887664
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=2.2e-19 Score=201.41 Aligned_cols=272 Identities=12% Similarity=0.100 Sum_probs=203.6
Q ss_pred ccceEEEEEccCCceeeeecc-------CcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeE
Q 001336 739 AMRVSRLIYTNSGLAILALAS-------NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPC 811 (1097)
Q Consensus 739 ~~~i~~l~~spdg~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~ 811 (1097)
...+..++|+|+|+.+++++. ++.|.+||.. +++...... ....+..
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~----------------------~~~~~~~~~----~~~~~~~ 93 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV----------------------TLEVTQAIH----NDLKPFG 93 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT----------------------TCCEEEEEE----ESSCCCS
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC----------------------CCeEEEEEe----cCCCcce
Confidence 356789999999998887774 4678777544 333322211 2234678
Q ss_pred EEEccCCCEEEEEe--CCeEEEEEcCCCceeEEeCCCCCC---------eEEEEEeCCCCCEEEEEE--CCCcEEEEEcc
Q 001336 812 FALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPA---------ATFLAFHPQDNNIIAIGM--EDSSIQIYNVR 878 (1097)
Q Consensus 812 l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~---------i~~l~~sp~~~~~la~g~--~dg~v~vwd~~ 878 (1097)
++|+|+|++++++. ++.|.+||..+++.+..+..+... +.+++|+| +++++++++ .++.|.+||+.
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETT
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCC
Confidence 99999999776665 689999999999988887654422 78999999 777777665 47889999999
Q ss_pred cceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE
Q 001336 879 VDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV 958 (1097)
Q Consensus 879 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~ 958 (1097)
+++.+..+..+...+.+++|+|+|++|++++.++.|.+||+.+++.... +... .......+..++|+|||++++++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~--~~~~--~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSR--KKLL--DDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEE--EECC--CSSSCCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEE--EEcC--CCCCCcccceEEECCCCCEEEEE
Confidence 9999988886666788999999999999999999999999998763321 2221 11111346789999999988774
Q ss_pred --eCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEe-cCCeEEEEeCCCCceeeeeCCCCcCCCCCCCce
Q 001336 959 --HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAF-EEGSVGVLTASTLRLRCRINPTAYLPTNPSLRV 1035 (1097)
Q Consensus 959 --~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s-~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v 1035 (1097)
.++.|.+||..+++.+..+.... ..+++|+|||++|++++ .++.|.+||+.+++.+..+... ..
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~--------~~- 315 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP--------TH- 315 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC--------SE-
T ss_pred eCCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC--------CC-
Confidence 45899999999999888777422 25799999999766555 6899999999999888766522 22
Q ss_pred eeEEEEEcCCCCCEEEEEecC
Q 001336 1036 YPLVIAGNPTDPNQFALGLTD 1056 (1097)
Q Consensus 1036 ~~l~i~~~p~~~~~l~s~~~D 1056 (1097)
+..++|+| ++++++++..+
T Consensus 316 -~~~~~~s~-dg~~l~v~~~~ 334 (353)
T 3vgz_A 316 -PNSLALSA-DGKTLYVSVKQ 334 (353)
T ss_dssp -EEEEEECT-TSCEEEEEEEC
T ss_pred -CCeEEEcC-CCCEEEEEEcc
Confidence 34568999 57755555554
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=1.3e-19 Score=201.64 Aligned_cols=278 Identities=10% Similarity=0.058 Sum_probs=204.9
Q ss_pred EEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCC-CeEEEEEccCCCEEEE-EECCCEEEEEEcc
Q 001336 334 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTA-SVNRVMWSPDGTLFGV-AYSKHIVHLYTYH 411 (1097)
Q Consensus 334 lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~spd~~~las-~~~dg~i~iwd~~ 411 (1097)
++++++.++.|.+||..+++.+... ..++.. .+.+++|+|||+++++ ++.++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~------------------~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVI------------------TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEE------------------ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEE------------------EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 5789999999999999998776531 112222 4788999999987655 5567899999999
Q ss_pred CCeeeeeeeeeec---ccCcEEEEEEecCCCcEEEEEEe------------CCCcEEEEECCCCceeEEeecCCcCeEEE
Q 001336 412 GGDELRNHLEIEA---HVGSVNDLAFSYPNKQLSVVTCG------------EDRVIKVWDAVTGTKQYIFEGHESPVYSI 476 (1097)
Q Consensus 412 ~~~~~~~~~~l~~---h~~~V~~l~~s~d~~~~~l~s~s------------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 476 (1097)
+++.+.... +.. |...+..++|+|+|+ ++++++ .++.|.+||+.+++.+..+.. ...+.++
T Consensus 65 ~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRID-LSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEEE-CCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeEE-cCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 987654321 211 223577899999999 566664 579999999999988887764 4456778
Q ss_pred eecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCC-----------------
Q 001336 477 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE----------------- 539 (1097)
Q Consensus 477 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~----------------- 539 (1097)
+| +++|++|+++ ++.|.+||+.+++....+..... ...+.|+|+++.++..+... +.
T Consensus 141 ~~--s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ 214 (337)
T 1pby_B 141 AW--ARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESS-GVMATPFYTARKDIDPADP 214 (337)
T ss_dssp EE--CTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTT-TEEEEEEEEEBTTSCTTSG
T ss_pred EE--CCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCC-Cceeeeeeccccccccccc
Confidence 77 5566777777 68999999988776655544331 11237899998776554221 11
Q ss_pred ----ceEEEEeCCCCeeeE-EecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEc
Q 001336 540 ----SYLVEWNESEGAVKR-TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN 614 (1097)
Q Consensus 540 ----~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 614 (1097)
..|.+||+.+++... .+..+. ..+..++|+|++++++++ ++.|++||+.+++.+..+... ..+.+++|+
T Consensus 215 ~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s 288 (337)
T 1pby_B 215 TAYRTGLLTMDLETGEMAMREVRIMD-VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP---HSYYSVNVS 288 (337)
T ss_dssp GGEEEEEEEEETTTCCEEEEEEEECS-SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS---SCCCEEEEC
T ss_pred cccccceEEEeCCCCCceEeecCCCC-CceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC---CceeeEEEC
Confidence 147899999887642 223333 267789999999999988 799999999999988887643 356899999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCceEEEEecc
Q 001336 615 KEGILLAVSTNDNGIKILANADGIRLLRTVES 646 (1097)
Q Consensus 615 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 646 (1097)
|++++|++++.++.|++||+.++ +....+..
T Consensus 289 ~dg~~l~~~~~~~~i~v~d~~~~-~~~~~~~~ 319 (337)
T 1pby_B 289 TDGSTVWLGGALGDLAAYDAETL-EKKGQVDL 319 (337)
T ss_dssp TTSCEEEEESBSSEEEEEETTTC-CEEEEEEC
T ss_pred CCCCEEEEEcCCCcEEEEECcCC-cEEEEEEc
Confidence 99999999999999999999988 45555543
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.85 E-value=3.5e-19 Score=198.25 Aligned_cols=303 Identities=10% Similarity=0.059 Sum_probs=203.5
Q ss_pred cEEEEEcCCCeEEEEEcCCCCceeeecCCCC--ceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCC--
Q 001336 485 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGH--SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG-- 560 (1097)
Q Consensus 485 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-- 560 (1097)
+++++++.++.|.+||+.+.+....+..... .+..++|+|+|++++++.. .+..|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC---CCCeEEEEECCCCCeEeeEEcCCcc
Confidence 5789999999999999998776666554332 4788999999988776653 24579999999998887766432
Q ss_pred --CcceEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECC
Q 001336 561 --KRSVGVVQFDTTKNRFLAAG------------DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 626 (1097)
Q Consensus 561 --~~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d 626 (1097)
...+..++|+|+++++++++ .++.|.+||+.+++.+..+... ..+.+++|+|++++++++ +
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP---RQITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC---SSCCCEEECTTSSCEEEE--S
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC---CCcceeEECCCCCEEEEe--C
Confidence 11456789999999999886 5799999999999888877642 356789999999988887 6
Q ss_pred CcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCccc
Q 001336 627 NGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKI 706 (1097)
Q Consensus 627 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (1097)
+.|++||+.++ +....+....... ...+ .++++.++
T Consensus 154 ~~i~~~d~~~~-~~~~~~~~~~~~~-------------------------------------~~~~------s~dg~~l~ 189 (337)
T 1pby_B 154 RDLHVMDPEAG-TLVEDKPIQSWEA-------------------------------------ETYA------QPDVLAVW 189 (337)
T ss_dssp SSEEEEETTTT-EEEEEECSTTTTT-------------------------------------TTBC------CCBCCCCC
T ss_pred CeEEEEECCCC-cEeeeeeccccCC-------------------------------------Ccee------CCCccEEe
Confidence 88999999887 4444332211000 0000 11112121
Q ss_pred ccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCc
Q 001336 707 ADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQ 786 (1097)
Q Consensus 707 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 786 (1097)
.....+....+ +.......++..... .....+.+|
T Consensus 190 ~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~-~~~~~v~~~-------------------- 224 (337)
T 1pby_B 190 NQHESSGVMAT------------------------PFYTARKDIDPADPT-AYRTGLLTM-------------------- 224 (337)
T ss_dssp CCCTTTTEEEE------------------------EEEEEBTTSCTTSGG-GEEEEEEEE--------------------
T ss_pred eeccCCCceee------------------------eeecccccccccccc-ccccceEEE--------------------
Confidence 11110000000 000000011100000 111134444
Q ss_pred ccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEE
Q 001336 787 LWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIG 866 (1097)
Q Consensus 787 ~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g 866 (1097)
|..+++.....+.. +...+.+++|+|||++++++ ++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++
T Consensus 225 --d~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~ 297 (337)
T 1pby_B 225 --DLETGEMAMREVRI--MDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL-PHSYYSVNVST-DGSTVWLG 297 (337)
T ss_dssp --ETTTCCEEEEEEEE--CSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECT-TSCEEEEE
T ss_pred --eCCCCCceEeecCC--CCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecC-CCceeeEEECC-CCCEEEEE
Confidence 44555443222222 55678899999999999988 79999999999988887763 35678999999 88888888
Q ss_pred ECCCcEEEEEcccceEEEEeccccc
Q 001336 867 MEDSSIQIYNVRVDEVKTKLKGHQK 891 (1097)
Q Consensus 867 ~~dg~v~vwd~~~~~~~~~l~~h~~ 891 (1097)
+.++.|++||+.+++.+..+..+..
T Consensus 298 ~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 298 GALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp SBSSEEEEEETTTCCEEEEEECGGG
T ss_pred cCCCcEEEEECcCCcEEEEEEcCCC
Confidence 9999999999999998888765543
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=3.6e-19 Score=199.12 Aligned_cols=249 Identities=11% Similarity=0.117 Sum_probs=168.9
Q ss_pred CCCCeeEEEEccCCCEEEEEe---CCeEEEEEcCCCc--eeEEeCCCCCCeEEEEEeCCCCCEEEEEE-CCCcEEEEEcc
Q 001336 805 PEDAVPCFALSKNDSYVMSAS---GGKISLFNMMTFK--TMTTFMPPPPAATFLAFHPQDNNIIAIGM-EDSSIQIYNVR 878 (1097)
Q Consensus 805 h~~~v~~l~~s~dg~~la~~s---dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~sp~~~~~la~g~-~dg~v~vwd~~ 878 (1097)
+...+..++|+|||+++++.. ++.|++|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 446677899999999444443 3789999997765 3444445677889999999 888888887 78899999996
Q ss_pred -cc--eEEEEecc---------cccCeEEEEEecCCCEEEEEeCCCcEEEEEcC-CCcccceeeEeecCCCCCCccCCeE
Q 001336 879 -VD--EVKTKLKG---------HQKRITGLAFSNTLNVLVSSGADSQLCVWSTD-GWEKQASKFLTIPNGRTASALADTR 945 (1097)
Q Consensus 879 -~~--~~~~~l~~---------h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 945 (1097)
++ +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++...........+ .....
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence 33 33333321 12348889999999966666678899999998 444222212222222 24678
Q ss_pred EEEcCCCcEEEEE--eCCeEEEEeCCC--cceeeeeeccCCC------CCEEEEEEecCCCEEE-EEecCCeEEEEeCCC
Q 001336 946 VQFHLDQTHLLAV--HETQIAIYEAPK--LECLKQFVPREAS------GPITHATYSCDSQSIY-VAFEEGSVGVLTAST 1014 (1097)
Q Consensus 946 l~~s~dg~~l~~~--~d~~v~vwd~~~--~~~~~~~~~~~h~------~~v~~v~~s~dg~~l~-s~s~Dg~v~vwd~~~ 1014 (1097)
++|+|||++|+++ .++.|.+|+++. ++........... ..+..++|+|||++|+ +...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9999999987774 568999999874 4432211111111 4588999999999874 555689999999973
Q ss_pred C---ceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEec-CCcEEEEecCCCCc
Q 001336 1015 L---RLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLT-DGGVYIIEPLEAEG 1069 (1097)
Q Consensus 1015 ~---~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~-Dg~v~~W~~~~~~~ 1069 (1097)
. +.+..+. .+...+. .++|+| |+++|++++. ++.|.+|++....+
T Consensus 272 ~g~~~~~~~~~-------~~~~~~~--~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg 320 (347)
T 3hfq_A 272 DGHLTLIQQIS-------TEGDFPR--DFDLDP-TEAFVVVVNQNTDNATLYARDLTSG 320 (347)
T ss_dssp GGCEEEEEEEE-------CSSSCCC--EEEECT-TSSEEEEEETTTTEEEEEEECTTTC
T ss_pred CCcEEEeEEEe-------cCCCCcC--eEEECC-CCCEEEEEEcCCCcEEEEEEeCCCC
Confidence 2 2333332 1223344 448899 6777777665 58999997654333
No 149
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=6.9e-20 Score=226.91 Aligned_cols=329 Identities=10% Similarity=0.072 Sum_probs=220.8
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC-CCCcceEEEcCCCCEEEEEEC---------CCcEEEEEcC
Q 001336 566 VVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG-LQASPCIRFNKEGILLAVSTN---------DNGIKILANA 635 (1097)
Q Consensus 566 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~s~~~---------dg~i~iw~~~ 635 (1097)
.+.|+|++. ++..+.|+.|++||+.+++....+..+.. ...+.+++|||||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 578999995 45555799999999999998777754311 113789999999999999876 6889999987
Q ss_pred CCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccc
Q 001336 636 DGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSR 715 (1097)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 715 (1097)
++. .....
T Consensus 99 ~g~-~~~~~----------------------------------------------------------------------- 106 (719)
T 1z68_A 99 NGE-FVRGN----------------------------------------------------------------------- 106 (719)
T ss_dssp TTE-ECCSS-----------------------------------------------------------------------
T ss_pred CCc-cccce-----------------------------------------------------------------------
Confidence 762 10000
Q ss_pred cccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCcc
Q 001336 716 IWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGIL 795 (1097)
Q Consensus 716 ~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 795 (1097)
. -...+..++|||||+.|+++. ++.|++|++..+. .
T Consensus 107 --------------~-------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~----------------------~ 142 (719)
T 1z68_A 107 --------------E-------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDP----------------------P 142 (719)
T ss_dssp --------------C-------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSC----------------------C
T ss_pred --------------e-------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCC----------------------c
Confidence 0 012356789999999999885 6799999775432 1
Q ss_pred ccccCCC------CCCC---------CCeeEEEEccCCCEEEEEe-CC--------------------------------
Q 001336 796 MTNDISD------TNPE---------DAVPCFALSKNDSYVMSAS-GG-------------------------------- 827 (1097)
Q Consensus 796 ~~~~~~~------~~h~---------~~v~~l~~s~dg~~la~~s-dg-------------------------------- 827 (1097)
......+ .++. ....+++|||||++|++++ |+
T Consensus 143 ~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~ 222 (719)
T 1z68_A 143 FQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNP 222 (719)
T ss_dssp EECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCC
T ss_pred EEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCC
Confidence 1110011 0011 1225899999999999987 42
Q ss_pred --eEEEEEcCCCcee--------EEeCCCCCCeEEEEEeCCCCCEEEEEECCC----cEEEEE----cccceEEEEe---
Q 001336 828 --KISLFNMMTFKTM--------TTFMPPPPAATFLAFHPQDNNIIAIGMEDS----SIQIYN----VRVDEVKTKL--- 886 (1097)
Q Consensus 828 --~i~iwd~~~~~~~--------~~~~~~~~~i~~l~~sp~~~~~la~g~~dg----~v~vwd----~~~~~~~~~l--- 886 (1097)
+|++||+.+++.. ..+.+|...+..++|+| |++++++....+ .|.+|| +.++++...+
T Consensus 223 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~ 301 (719)
T 1z68_A 223 VVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHI 301 (719)
T ss_dssp EEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEE
T ss_pred eeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecc
Confidence 7889999988753 12335777899999999 787777754332 488899 7787766555
Q ss_pred -cccccCeE-----EEEEecCCCEEEE--EeCCC--cEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEE
Q 001336 887 -KGHQKRIT-----GLAFSNTLNVLVS--SGADS--QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL 956 (1097)
Q Consensus 887 -~~h~~~V~-----~l~~s~dg~~l~s--~~~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 956 (1097)
.+|.+.+. .++|+|||+.|+. ...+| .|.+|++.+++. ..+..+. ..+..+.++ +++.|+
T Consensus 302 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-----~~lt~~~----~~v~~~~~~-d~~~i~ 371 (719)
T 1z68_A 302 EESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-----IQITSGK----WEAINIFRV-TQDSLF 371 (719)
T ss_dssp EECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-----EECSCSS----SCEEEEEEE-CSSEEE
T ss_pred cccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-----EecccCc----eEEEEEEEE-eCCEEE
Confidence 46777776 8899999996554 44566 466667766441 1222221 236677777 888777
Q ss_pred E-EeC-----CeEEEEeCCC--cce-eeeee--ccCCCCCEEEEEEecCCCEEEEE-ecC--CeEEEEeCCCCceeeeeC
Q 001336 957 A-VHE-----TQIAIYEAPK--LEC-LKQFV--PREASGPITHATYSCDSQSIYVA-FEE--GSVGVLTASTLRLRCRIN 1022 (1097)
Q Consensus 957 ~-~~d-----~~v~vwd~~~--~~~-~~~~~--~~~h~~~v~~v~~s~dg~~l~s~-s~D--g~v~vwd~~~~~~~~~~~ 1022 (1097)
. +.+ +.+.+|.+.. +.. ...+. ..+|...+..+.||+||++++.. +.+ ..+.+||+.+++....+.
T Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 372 YSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp EEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred EEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 6 443 6788887764 321 22222 11356778899999999987754 333 478899998887554433
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=1.6e-19 Score=196.62 Aligned_cols=254 Identities=11% Similarity=0.054 Sum_probs=190.8
Q ss_pred CCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEecCCCCCCcceEEEcCC
Q 001336 538 GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQASPCIRFNKE 616 (1097)
Q Consensus 538 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~ 616 (1097)
.+..|++||+.+++..... .+.. .+.+++|+|++++|++++ ++.|++||+.+ ++.......+ ....+.+++|+|+
T Consensus 20 ~~~~i~~~d~~~~~~~~~~-~~~~-~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~spd 95 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVW-QTPE-LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGF-ATICNNDHGISPD 95 (297)
T ss_dssp CCEEEEEEETTTTEEEEEE-EESS-CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTT-CCCBCSCCEECTT
T ss_pred cceeEEEEeCCCCceeeec-cCCc-ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccc-ccccccceEECCC
Confidence 4668999999998876444 3444 899999999999999987 78999999999 8776655433 2357889999999
Q ss_pred CCEEEEEE--CCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCC
Q 001336 617 GILLAVST--NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSN 694 (1097)
Q Consensus 617 ~~~l~s~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1097)
+++|++++ .++...||.+.........+
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~-------------------------------------------------- 125 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGTPRLM-------------------------------------------------- 125 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCCCEEC--------------------------------------------------
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCceEEe--------------------------------------------------
Confidence 99999998 44556666543210000000
Q ss_pred CCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceee-eeccCcEEEEeccCCCCC
Q 001336 695 DSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAIL-ALASNAVHKLWKWPRNER 773 (1097)
Q Consensus 695 ~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~-~~~~dg~i~vw~~~~~~~ 773 (1097)
. ....+..++|+|||+.|+ ++..++.+++|++..
T Consensus 126 -------------------------------------~-----~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~--- 160 (297)
T 2ojh_A 126 -------------------------------------T-----KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI--- 160 (297)
T ss_dssp -------------------------------------C-----SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEET---
T ss_pred -------------------------------------e-----cCCCccceEECCCCCEEEEEECCCCceEEEEEEC---
Confidence 0 112377889999999887 677789999997642
Q ss_pred CccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEcC-CCceeEEeCCCCCCe
Q 001336 774 NSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMM-TFKTMTTFMPPPPAA 850 (1097)
Q Consensus 774 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~-~~~~~~~~~~~~~~i 850 (1097)
.++.... +.. +...+.+++|+|+|++|+.++ ++.++||++. .+.....+..+...+
T Consensus 161 -----------------~~~~~~~--~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 219 (297)
T 2ojh_A 161 -----------------DSGVETR--LTH--GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGD 219 (297)
T ss_dssp -----------------TTCCEEE--CCC--SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEE
T ss_pred -----------------CCCcceE--ccc--CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCccc
Confidence 2222221 222 667899999999999888765 7889999886 566677788788889
Q ss_pred EEEEEeCCCCCEEEEEECC-----------CcEEEEEcccceE--EEEecccccCeEEEEEecCCCEEEEEeCCC
Q 001336 851 TFLAFHPQDNNIIAIGMED-----------SSIQIYNVRVDEV--KTKLKGHQKRITGLAFSNTLNVLVSSGADS 912 (1097)
Q Consensus 851 ~~l~~sp~~~~~la~g~~d-----------g~v~vwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg 912 (1097)
.+++|+| ++++|++++.+ +.|++||+.+++. +..+.+|...+..++|+||++.|++++.|.
T Consensus 220 ~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 220 WFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCeEECC-CCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 9999999 89998888766 5699999988754 445557888999999999999999887654
No 151
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=6.1e-20 Score=221.06 Aligned_cols=272 Identities=15% Similarity=0.051 Sum_probs=196.5
Q ss_pred CCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCC-CCeEEEEEccCCCEEE
Q 001336 319 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT-ASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 319 ~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spd~~~la 397 (1097)
..+|++++|+|||++|+.++..||++.||++.+++... +..|. ..|..++|||| +.++
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l~ 79 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVIL 79 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEEE
Confidence 34799999999999775555559999999997665433 34444 68999999999 7888
Q ss_pred EEEC---CCEEEEEEccC--CeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcC
Q 001336 398 VAYS---KHIVHLYTYHG--GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 472 (1097)
Q Consensus 398 s~~~---dg~i~iwd~~~--~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~ 472 (1097)
+++. +....+|.+.. ...... +..+. .+...+|+||++..++++++.++ +.+||+.+++.......+.
T Consensus 80 ~~~~~~g~~~~~l~~~~~~~~g~~~~---l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~-- 152 (582)
T 3o4h_A 80 VRDVSKGAEQHALFKVNTSRPGEEQR---LEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG-- 152 (582)
T ss_dssp EEECSTTSCCEEEEEEETTSTTCCEE---CTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS--
T ss_pred EeccCCCCcceEEEEEeccCCCcccc---ccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC--
Confidence 7775 45556665543 211122 22222 24467899999865565555555 4599999987766554433
Q ss_pred eEEEeecccCCccEEEEEcCC----CeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCC
Q 001336 473 VYSICPHHKENIQFIFSTATD----GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 548 (1097)
Q Consensus 473 v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 548 (1097)
.+++| ++||++|++++.+ +.|++||+++++.. .+..+...+..++|||||+.|++... ++...|++||+.
T Consensus 153 -~~~~~--spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~~ 226 (582)
T 3o4h_A 153 -FGFVS--DIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDPR 226 (582)
T ss_dssp -CEEEE--EEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECTT
T ss_pred -ceEEE--CCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcCC
Confidence 66777 5567899988777 78999999876654 55666678899999999999995433 334589999999
Q ss_pred CCeeeEEecCCCCcceEEEE--------EcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEE
Q 001336 549 EGAVKRTYHGLGKRSVGVVQ--------FDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL 620 (1097)
Q Consensus 549 ~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 620 (1097)
+++.. .+.++.. .+..+. |+|+|..+++++.++.+++|++ |+.... . ...+.+++|+ +++++
T Consensus 227 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~--~~~v~~~~~s-dg~~l 296 (582)
T 3o4h_A 227 DGSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---P--QGNHGRVVLW-RGKLV 296 (582)
T ss_dssp TCCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---C--SSEEEEEEEE-TTEEE
T ss_pred CCcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---C--CCceEEEEec-CCEEE
Confidence 98877 6666554 455555 9999988889999999999999 665441 1 3467899999 99999
Q ss_pred EEEECCCc---EEEEEc
Q 001336 621 AVSTNDNG---IKILAN 634 (1097)
Q Consensus 621 ~s~~~dg~---i~iw~~ 634 (1097)
++++.+.+ +.+|+.
T Consensus 297 ~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 297 TSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EEEEETTEEEEEEEETT
T ss_pred EEEcCCCCCCeEEEEcC
Confidence 88887754 455544
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=1.1e-19 Score=225.09 Aligned_cols=286 Identities=10% Similarity=0.028 Sum_probs=190.7
Q ss_pred eEEEEEccCCceeeeecc---------CcEEEEeccCCCCCCccCccccccCCcccCCCCCcccc-ccCCCCCCCCCeeE
Q 001336 742 VSRLIYTNSGLAILALAS---------NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT-NDISDTNPEDAVPC 811 (1097)
Q Consensus 742 i~~l~~spdg~~l~~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~h~~~v~~ 811 (1097)
+.+++|||||++|++++. ++.|++|++. +++.+. .. ....+..
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~----------------------~g~~~~~~~-----l~~~~~~ 114 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS----------------------NGEFVRGNE-----LPRPIQY 114 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT----------------------TTEECCSSC-----CCSSBCC
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC----------------------CCcccccee-----cCccccc
Confidence 668899999999998876 6788888654 333210 00 1245788
Q ss_pred EEEccCCCEEEEEeCCeEEEEEcCCCceeEEe-CCCCCCe-----------------EEEEEeCCCCCEEEEEECCC---
Q 001336 812 FALSKNDSYVMSASGGKISLFNMMTFKTMTTF-MPPPPAA-----------------TFLAFHPQDNNIIAIGMEDS--- 870 (1097)
Q Consensus 812 l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~-~~~~~~i-----------------~~l~~sp~~~~~la~g~~dg--- 870 (1097)
++|||||+.||.+.++.|++|++.+++..+.. .++...+ .+++||| ||++||+++.|.
T Consensus 115 ~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~ 193 (719)
T 1z68_A 115 LCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDI 193 (719)
T ss_dssp EEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTS
T ss_pred ceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCC
Confidence 99999999999999999999999988775543 2222222 4899999 999999987652
Q ss_pred -------------------------------cEEEEEcccceEE--------EEecccccCeEEEEEecCCCEEEEEeCC
Q 001336 871 -------------------------------SIQIYNVRVDEVK--------TKLKGHQKRITGLAFSNTLNVLVSSGAD 911 (1097)
Q Consensus 871 -------------------------------~v~vwd~~~~~~~--------~~l~~h~~~V~~l~~s~dg~~l~s~~~D 911 (1097)
.|++||+.+++.. ..+.+|...+..++||||++++++....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~ 273 (719)
T 1z68_A 194 PVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKR 273 (719)
T ss_dssp CEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEES
T ss_pred ceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecc
Confidence 7889999887642 1234688889999999998877774433
Q ss_pred C----cEEEEE----cCCCcccceeeEeecCCCCCCccCCe-----EEEEcCCCcEEEE--E-eCC--eEEEEeCCCcce
Q 001336 912 S----QLCVWS----TDGWEKQASKFLTIPNGRTASALADT-----RVQFHLDQTHLLA--V-HET--QIAIYEAPKLEC 973 (1097)
Q Consensus 912 g----~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~v~-----~l~~s~dg~~l~~--~-~d~--~v~vwd~~~~~~ 973 (1097)
+ .|.+|| ..+++...... ....++. ..+. .+.|+|||+.|+. + .++ .|.+||+.+++
T Consensus 274 ~~~~~~l~~~d~~~~~~~g~~~~~~~-~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~- 348 (719)
T 1z68_A 274 VQNVSVLSICDFREDWQTWDCPKTQE-HIEESRT---GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN- 348 (719)
T ss_dssp STTEEEEEEEEECSSSSSEECCGGGE-EEEECSS---SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-
T ss_pred ccCeEEEEEEcccCCCCCCceEEEEe-cccccCC---ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-
Confidence 2 488899 77655332110 0001222 2344 7899999997655 3 233 68888888776
Q ss_pred eeeeeccCCCCCEEEEEEecCCCEEEEEecC-----CeEEEEeCCC--Cce-eeeeCCCCcCCCCCCCceeeEEEEEcCC
Q 001336 974 LKQFVPREASGPITHATYSCDSQSIYVAFEE-----GSVGVLTAST--LRL-RCRINPTAYLPTNPSLRVYPLVIAGNPT 1045 (1097)
Q Consensus 974 ~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~D-----g~v~vwd~~~--~~~-~~~~~~~~~~~~~h~~~v~~l~i~~~p~ 1045 (1097)
...+. .+...+..+.++ |++.|+..+.+ +.+++|.+.. +.. ...+... ..+|...+..+ .|+|+
T Consensus 349 ~~~lt--~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~---~~~~~~~~~~~--~~s~d 420 (719)
T 1z68_A 349 AIQIT--SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCH---LRKERCQYYTA--SFSDY 420 (719)
T ss_dssp CEECS--CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTT---TTTTTBCBEEE--EECGG
T ss_pred eEecc--cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCc---cCCCCCceEEE--EECCC
Confidence 33343 445678888888 88887776665 8889998764 321 1222210 01244555554 88895
Q ss_pred CCCEEEEEecC--CcEEEEecCCCC
Q 001336 1046 DPNQFALGLTD--GGVYIIEPLEAE 1068 (1097)
Q Consensus 1046 ~~~~l~s~~~D--g~v~~W~~~~~~ 1068 (1097)
...++++++.+ ..+.+||+.+++
T Consensus 421 g~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 421 AKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp GSSEEEEECCBSSCEEEEECSSSCC
T ss_pred CCEEEEEcCCCCCCeEEEEECCCCC
Confidence 44455455555 468889886554
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=1.7e-18 Score=198.36 Aligned_cols=314 Identities=14% Similarity=0.116 Sum_probs=199.2
Q ss_pred ccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCC
Q 001336 739 AMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND 818 (1097)
Q Consensus 739 ~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 818 (1097)
...+..+++++++..+++++.++ +++|+....... .........+...... ..+ .+...|.+++|+|+|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~---~~~~~v~~l~~spdg 104 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ---NKPGDDPNKIVDKVQG----LLV---PMKFPIHHLALSCDN 104 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC---CCTTCCTTCEEECCCC----EEE---CCSSCEEEEEECTTS
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh---cccccCcccccccCcc----ccc---cCCCcccEEEEcCCC
Confidence 34678899999999999998888 888765421000 0000000000000000 001 156789999999999
Q ss_pred CEEE----EEe-CCeEEEEEcCCC--------c---eeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceE
Q 001336 819 SYVM----SAS-GGKISLFNMMTF--------K---TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV 882 (1097)
Q Consensus 819 ~~la----~~s-dg~i~iwd~~~~--------~---~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~ 882 (1097)
++|+ +++ |++|+|||+.++ + .+..+.+|...|.+++|+|+++.+|++++.||+|++||+.++..
T Consensus 105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 9999 566 899999998654 2 24556778999999999994489999999999999999999987
Q ss_pred EEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCC-CCccCCeEEEEcCCCcEEEEE--e
Q 001336 883 KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT-ASALADTRVQFHLDQTHLLAV--H 959 (1097)
Q Consensus 883 ~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~s~dg~~l~~~--~ 959 (1097)
+....+|...|++++|+|+|++|++++.||+|++||+. ++.. ..+....... .+...+.+++|++++.++++. .
T Consensus 185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~--~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK--KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE--EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc--ccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 77778899999999999999999999999999999998 3321 1122111110 111368999999999988773 3
Q ss_pred CC------eEEEEeCCCccee-----eeeecc-----CCCCCEEEEEEecCCCEEEEEecC-CeEEEEeCCCCc--e-ee
Q 001336 960 ET------QIAIYEAPKLECL-----KQFVPR-----EASGPITHATYSCDSQSIYVAFEE-GSVGVLTASTLR--L-RC 1019 (1097)
Q Consensus 960 d~------~v~vwd~~~~~~~-----~~~~~~-----~h~~~v~~v~~s~dg~~l~s~s~D-g~v~vwd~~~~~--~-~~ 1019 (1097)
+| .+++|++.+.+.. ..+... +...+-..+.+-+|.+++++++.. +.|.|....... . ..
T Consensus 262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~ 341 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESW 341 (434)
T ss_dssp TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEE
Confidence 32 3999999865311 111110 112222234444788887766653 445555533211 0 00
Q ss_pred eeC--CCCcCCCC-CCCcee--eEEEEEcCCC------------CCEEEEEecCCcEEEEecCC
Q 001336 1020 RIN--PTAYLPTN-PSLRVY--PLVIAGNPTD------------PNQFALGLTDGGVYIIEPLE 1066 (1097)
Q Consensus 1020 ~~~--~~~~~~~~-h~~~v~--~l~i~~~p~~------------~~~l~s~~~Dg~v~~W~~~~ 1066 (1097)
... ....+|-. .....+ .+++..+..+ --.|..-+.||.|..|.+-.
T Consensus 342 ~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 342 LLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp EECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred eccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 110 01112211 112223 3344443322 13788899999999999865
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=1.3e-18 Score=199.34 Aligned_cols=258 Identities=11% Similarity=0.056 Sum_probs=177.4
Q ss_pred CCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeee---eeeeEeeccccCccccccccCCCCCCeEEEEEccCCCE
Q 001336 319 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAV---KSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 395 (1097)
Q Consensus 319 ~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 395 (1097)
...++.+++++++.+ +++|+.++ |+||+......... ....+. .........+...|.+++|+|+|++
T Consensus 36 ~~~~n~lavs~~~~~-l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~l~~spdg~~ 106 (434)
T 2oit_A 36 KERSSLLAVSNKYGL-VFAGGASG-LQIFPTKNLLIQNKPGDDPNKIV-------DKVQGLLVPMKFPIHHLALSCDNLT 106 (434)
T ss_dssp CSCCBCEEEETTTTE-EEEEETTE-EEEEEHHHHCCCCCTTCCTTCEE-------ECCCCEEECCSSCEEEEEECTTSCE
T ss_pred CCCccEEEEecCCCE-EEEECCCE-EEEEEchHhhhhcccccCccccc-------ccCccccccCCCcccEEEEcCCCCE
Confidence 346889999999985 57777787 89988643211000 000000 0000011246678999999999999
Q ss_pred EE----EEECCCEEEEEEccCC--------eeeeeeeeeecccCcEEEEEEecC-CCcEEEEEEeCCCcEEEEECCCCce
Q 001336 396 FG----VAYSKHIVHLYTYHGG--------DELRNHLEIEAHVGSVNDLAFSYP-NKQLSVVTCGEDRVIKVWDAVTGTK 462 (1097)
Q Consensus 396 la----s~~~dg~i~iwd~~~~--------~~~~~~~~l~~h~~~V~~l~~s~d-~~~~~l~s~s~d~~i~iwd~~~~~~ 462 (1097)
|| +|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++||++++..
T Consensus 107 lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 107 LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEE
T ss_pred EEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcc
Confidence 99 7888999999999765 222334457789999999999998 56 899999999999999999988
Q ss_pred eEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCC-------CCceEEEEEccCCCEEEEeeeC
Q 001336 463 QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP-------GHSSTMMAYSADGARLFSCGTN 535 (1097)
Q Consensus 463 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~ 535 (1097)
+....+|...|.+++|+ ++|.+|++|+.||+|++||.+ ......+..+ ...+.+++|++++.++++.+..
T Consensus 185 ~~~~~~~~~~v~~v~ws--pdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWS--PKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEEEECGGGCEEEEEEC--TTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred eeeccCCCCceeEEEEc--CCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 77778899999999995 457899999999999999998 4444333322 1278999999988887665432
Q ss_pred C---CCCceEEEEeCCCCe-----eeEEec-------CCCCcceEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 001336 536 K---EGESYLVEWNESEGA-----VKRTYH-------GLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMD 591 (1097)
Q Consensus 536 ~---~~~~~i~~wd~~~~~-----~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~ 591 (1097)
. .....+.+|++.+.. ....+. +... ....+..-++.+++++++ ..+.|.++...
T Consensus 262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEec
Confidence 1 112358999987642 112221 1122 222333446667777766 45556666543
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=6.5e-19 Score=212.09 Aligned_cols=237 Identities=15% Similarity=0.156 Sum_probs=178.6
Q ss_pred CCCCeEEEEEccCCCEEEEEEC-CCEEEEEEccCCeeeeeeeeeeccc-CcEEEEEEecCCCcEEEEEEeC---CCcEEE
Q 001336 380 YTASVNRVMWSPDGTLFGVAYS-KHIVHLYTYHGGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGE---DRVIKV 454 (1097)
Q Consensus 380 h~~~V~~v~~spd~~~las~~~-dg~i~iwd~~~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~~~l~s~s~---d~~i~i 454 (1097)
+..+|.+++|+|||++||+++. ||+++||++.+++..+ +..|. ..+..++|+|| + ++++++. +...++
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~----lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK----LNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHAL 92 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE----CCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe----eecccccccccccCCCC-e--EEEEeccCCCCcceEE
Confidence 3558999999999999999887 9999999998776433 44555 68999999999 5 6777765 455566
Q ss_pred EECCC---CceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEE
Q 001336 455 WDAVT---GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFS 531 (1097)
Q Consensus 455 wd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 531 (1097)
|.+.. +... .+..+. .+...+|++++++..+++++.++.. +||+++++.......+. .+++|||||++|++
T Consensus 93 ~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~ 166 (582)
T 3o4h_A 93 FKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG---FGFVSDIRGDLIAG 166 (582)
T ss_dssp EEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS---CEEEEEEETTEEEE
T ss_pred EEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC---ceEEECCCCCEEEE
Confidence 54432 3333 343222 3445677777765566666665555 99998776554443332 78999999999998
Q ss_pred eeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceEEEEecCCCCCCcc
Q 001336 532 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF--MIKFWDMDNVNLLASIDADGGLQASP 609 (1097)
Q Consensus 532 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~ 609 (1097)
++.+..+...|++||+.+++.. .+..+.. .+..++|+|||+.|+++..++ .|++||+++++.. .+..+ ...+.
T Consensus 167 ~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~ 241 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFS 241 (582)
T ss_dssp EEEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHH
T ss_pred EEEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChh
Confidence 8776544467999999988765 5566654 789999999999999888888 8999999998877 55433 45666
Q ss_pred eEE--------EcCCCCEEEEEECCCcEEEEEc
Q 001336 610 CIR--------FNKEGILLAVSTNDNGIKILAN 634 (1097)
Q Consensus 610 ~v~--------~s~~~~~l~s~~~dg~i~iw~~ 634 (1097)
.++ |+|||.++++++.++.+++|++
T Consensus 242 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 242 SYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 777 9999999999999999999998
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.82 E-value=2.6e-17 Score=183.91 Aligned_cols=245 Identities=10% Similarity=0.100 Sum_probs=171.9
Q ss_pred CCCCeEEEEEccCCCEEEEEEC---CCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEe-CCCcEEEE
Q 001336 380 YTASVNRVMWSPDGTLFGVAYS---KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVW 455 (1097)
Q Consensus 380 h~~~V~~v~~spd~~~las~~~---dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s-~d~~i~iw 455 (1097)
+...+..++|+|||+ |++++. ++.|.+|++.+++. .....+..+...+..++|+|||+ +|++++ .++.|.+|
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~p~~~a~spdg~--~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPGTPPAYVAVDEARQ--LVYSANYHKGTAEVM 113 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEESCCCSEEEEETTTT--EEEEEETTTTEEEEE
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCCCCCEEEEECCCCC--EEEEEeCCCCEEEEE
Confidence 456778899999999 555544 68999999987763 33334556778899999999999 677766 78999999
Q ss_pred ECC-CCc--eeEEeec---------CCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceee---ecC-CCCceEE
Q 001336 456 DAV-TGT--KQYIFEG---------HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD---YDA-PGHSSTM 519 (1097)
Q Consensus 456 d~~-~~~--~~~~~~~---------h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~-~~~~v~~ 519 (1097)
|+. ++. .+..+.. +...+.+++|+ ++|+++++...++.|.+|+++....... ... .......
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s--pdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~ 191 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT--PDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH 191 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC--TTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEEC--CCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence 996 333 2333322 12347888884 5567777777889999999983332221 122 2336788
Q ss_pred EEEccCCCEEEEeeeCCCCCceEEEEeCCC--Cee--eEEecCCCC-----cceEEEEEcCCCCEEEE-EeCCCcEEEEE
Q 001336 520 MAYSADGARLFSCGTNKEGESYLVEWNESE--GAV--KRTYHGLGK-----RSVGVVQFDTTKNRFLA-AGDEFMIKFWD 589 (1097)
Q Consensus 520 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~~--~~~~~~~~~-----~~v~~~~~~~~~~~l~~-~~~dg~i~iwd 589 (1097)
++|+|||++++++.. ....|.+|++.. ++. +..+..... ..+..++|+|+|++|++ ...++.|.+|+
T Consensus 192 ~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~ 268 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGE---LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA 268 (347)
T ss_dssp EEECTTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred EEECCCCCEEEEEeC---CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence 999999998877653 245788888763 543 233332221 25788999999998755 45789999999
Q ss_pred CCC-C--ceEEEEecCCCCCCcceEEEcCCCCEEEEEECC-CcEEEEEcC
Q 001336 590 MDN-V--NLLASIDADGGLQASPCIRFNKEGILLAVSTND-NGIKILANA 635 (1097)
Q Consensus 590 ~~~-~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d-g~i~iw~~~ 635 (1097)
+.. + +.+..+..+ ...+..++|+|+|++|++++.+ +.|.+|++.
T Consensus 269 ~~~~g~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 269 VTADGHLTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp ECGGGCEEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ECCCCcEEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 973 2 444445433 3457899999999988888764 899999554
No 157
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=4.4e-18 Score=210.46 Aligned_cols=274 Identities=12% Similarity=0.067 Sum_probs=185.0
Q ss_pred CeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCC-----CeEEEEEccCCCE
Q 001336 321 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTA-----SVNRVMWSPDGTL 395 (1097)
Q Consensus 321 ~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~spd~~~ 395 (1097)
...+++|+|||++ ++++ ||+|.+||+.+++.... +.+|.. ....++|||||++
T Consensus 18 ~~~~~~w~~dg~~-~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~~ 75 (740)
T 4a5s_A 18 KLYSLRWISDHEY-LYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQF 75 (740)
T ss_dssp CCCCEEECSSSEE-EEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSSE
T ss_pred cccccEECCCCcE-EEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCCE
Confidence 3558999999974 4665 99999999999876432 333332 3345899999999
Q ss_pred EEEEECC---------CEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE-
Q 001336 396 FGVAYSK---------HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI- 465 (1097)
Q Consensus 396 las~~~d---------g~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~- 465 (1097)
|++++.+ +.+.+||+.+++... +..|...+...+|||||+ .|+.+ .|+.|++||+.+++..+.
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~-~~~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECC
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEE-ECCeEEEEECCCCceEEEc
Confidence 9999886 566799999987443 667888999999999999 56666 468999999988876542
Q ss_pred eecCCcCe-----------------EEEeecccCCccEEEEEcCCCe-EEEEEcCCCCceeeecCCCCceEEEEEccCCC
Q 001336 466 FEGHESPV-----------------YSICPHHKENIQFIFSTATDGK-IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGA 527 (1097)
Q Consensus 466 ~~~h~~~v-----------------~~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 527 (1097)
..++...+ ..+.| ++||+.|+.++.|.+ +.+|++....... .+...+..+.+.+.|.
T Consensus 149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA 223 (740)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS
T ss_pred CCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcC
Confidence 23333333 23556 677888888875544 8888764322110 1233566777777664
Q ss_pred EEEEeeeCCCCCceEEEEeCCC---Ce--eeEEecC------CCCcceEEEEEcCCCCEEEEEe----CCCcEEEEECCC
Q 001336 528 RLFSCGTNKEGESYLVEWNESE---GA--VKRTYHG------LGKRSVGVVQFDTTKNRFLAAG----DEFMIKFWDMDN 592 (1097)
Q Consensus 528 ~l~~~~~~~~~~~~i~~wd~~~---~~--~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~ 592 (1097)
. +....|.+||+.+ +. ....+.. +. ..+..++|+|||+.++... .+..|++||+.+
T Consensus 224 ~--------~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 224 V--------NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGD-HYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp C--------CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSC-EEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred c--------CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCC-eEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 3 1233699999998 73 2233332 33 3788999999998766654 234799999998
Q ss_pred Cc----e--EEEEecCCCCCCcc-----eEEEcCCCCEEE-EEEC-CC--cEEEEEcCCC
Q 001336 593 VN----L--LASIDADGGLQASP-----CIRFNKEGILLA-VSTN-DN--GIKILANADG 637 (1097)
Q Consensus 593 ~~----~--~~~~~~~~~~~~v~-----~v~~s~~~~~l~-s~~~-dg--~i~iw~~~~~ 637 (1097)
++ + +..+...++...+. .++|+|||+.|+ ..+. +| .|++|+..++
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 87 1 11121112233333 789999999877 6654 33 5666776544
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=8e-17 Score=181.05 Aligned_cols=178 Identities=11% Similarity=0.114 Sum_probs=122.1
Q ss_pred CCCeeEEEEccCCCEEEEEe--CCeEEEEEcCCCc-------e------eEEeCCCCCCeEEEEEeCCCCCEEEEEE-CC
Q 001336 806 EDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFK-------T------MTTFMPPPPAATFLAFHPQDNNIIAIGM-ED 869 (1097)
Q Consensus 806 ~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~-------~------~~~~~~~~~~i~~l~~sp~~~~~la~g~-~d 869 (1097)
...+.+++|+|||+++++++ ++.|.+|++.... . ......+...+..++|+| +++++++++ .+
T Consensus 154 ~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~ 232 (361)
T 3scy_A 154 MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIG 232 (361)
T ss_dssp SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTT
T ss_pred CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCC
Confidence 34467788888888776665 6788888876433 1 112233455688999999 888887777 68
Q ss_pred CcEEEEEcccceE--EEEe---cccccCeEEEEEecCCCEEEEEeCC--CcEEEEEcC--CCcccceeeEeecCCCCCCc
Q 001336 870 SSIQIYNVRVDEV--KTKL---KGHQKRITGLAFSNTLNVLVSSGAD--SQLCVWSTD--GWEKQASKFLTIPNGRTASA 940 (1097)
Q Consensus 870 g~v~vwd~~~~~~--~~~l---~~h~~~V~~l~~s~dg~~l~s~~~D--g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~ 940 (1097)
+.|.+|++.+++. +..+ ..+......++|+|||++|+++..+ +.|.+|++. +++......+ ..+
T Consensus 233 ~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~--~~g----- 305 (361)
T 3scy_A 233 GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ--LTG----- 305 (361)
T ss_dssp CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE--ECS-----
T ss_pred CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe--cCC-----
Confidence 9999999998754 2333 2344557899999999998776665 889999996 3332221112 112
Q ss_pred cCCeEEEEcCCCcEEEEE--eCCeEEEEeC--CCcceeeeeeccCCCCCEEEEEEe
Q 001336 941 LADTRVQFHLDQTHLLAV--HETQIAIYEA--PKLECLKQFVPREASGPITHATYS 992 (1097)
Q Consensus 941 ~~v~~l~~s~dg~~l~~~--~d~~v~vwd~--~~~~~~~~~~~~~h~~~v~~v~~s 992 (1097)
..+..++|+|||++|+++ .++.|.+|++ ++++...... ..+...+.|+.|.
T Consensus 306 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~-~~~~~~p~~v~~~ 360 (361)
T 3scy_A 306 IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK-DIKVDKPVCLKFV 360 (361)
T ss_dssp SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC-CEECSSEEEEEEE
T ss_pred CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce-eeeCCCCeEEEEc
Confidence 347889999999999885 4688999654 4666543321 1235678999886
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=1.8e-17 Score=188.49 Aligned_cols=298 Identities=10% Similarity=0.002 Sum_probs=196.2
Q ss_pred eEEEEee-cCCCeeE-----EEEccCCCeEEEEEeCCC--eEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCC
Q 001336 311 TVVMTLN-QGSAVKS-----MDFHPVQQILLVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTA 382 (1097)
Q Consensus 311 ~~~~~~~-h~~~V~~-----v~fspdg~~lla~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 382 (1097)
..+..+. +...... .+|||||++|++++..+| .|.+||+.+++.... ..++..
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-------------------t~~~~~ 81 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-------------------TEGRGD 81 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-------------------CCSSCB
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-------------------eeCCCC
Confidence 3444444 4444555 899999998866665577 488889888876542 445655
Q ss_pred CeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEE--EecCCCcEEEEEE--------------
Q 001336 383 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLA--FSYPNKQLSVVTC-------------- 446 (1097)
Q Consensus 383 ~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~--~s~d~~~~~l~s~-------------- 446 (1097)
.+..++|||||+.|+.++.++.|++||+.+++.... +..+...+.... ++++++ +++..
T Consensus 82 ~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~---~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~ 156 (388)
T 3pe7_A 82 NTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVV---YQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWK 156 (388)
T ss_dssp CSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEE---EECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHH
T ss_pred CccceEEcCCCCEEEEEeCCCeEEEEECCCCcceee---eechhhcccccceeECCCCC--eeccccccCcccccccccc
Confidence 666788999999999999999999999999875432 334555454444 489998 45532
Q ss_pred --------eCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCC------CeEEEEEcCCCCceeeecC
Q 001336 447 --------GEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATD------GKIKAWLYDNLGSRVDYDA 512 (1097)
Q Consensus 447 --------s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~ 512 (1097)
+.+..|.+||+.+++... +..+...+..++|+|. +|+.|+....+ ..|.++|.+..........
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 234 (388)
T 3pe7_A 157 KFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH 234 (388)
T ss_dssp HHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC
T ss_pred hhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC
Confidence 244689999999987544 4456677888888440 56777766543 3677777765444333322
Q ss_pred CC-CceEEEEEccCCCEEEEeeeCCC-CCceEEEEeCCCCeeeE--EecCCCC--cceEEEEEcCCCCEEEEE-------
Q 001336 513 PG-HSSTMMAYSADGARLFSCGTNKE-GESYLVEWNESEGAVKR--TYHGLGK--RSVGVVQFDTTKNRFLAA------- 579 (1097)
Q Consensus 513 ~~-~~v~~~~~s~~~~~l~~~~~~~~-~~~~i~~wd~~~~~~~~--~~~~~~~--~~v~~~~~~~~~~~l~~~------- 579 (1097)
.. ..+..++|+|||+.|+..+.... ....|.+||+.+++... .+.++.. .......|+|+|+.|+..
T Consensus 235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 314 (388)
T 3pe7_A 235 AEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGY 314 (388)
T ss_dssp CTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC----------
T ss_pred CCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccc
Confidence 22 25778899999998877664322 22359999999886433 3333100 001113689999887754
Q ss_pred --eCCCcEEEEECCCCceEEEEecCCCCC--------CcceEEEcCCCCEEEEEEC-CCcEEEEEc
Q 001336 580 --GDEFMIKFWDMDNVNLLASIDADGGLQ--------ASPCIRFNKEGILLAVSTN-DNGIKILAN 634 (1097)
Q Consensus 580 --~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~v~~s~~~~~l~s~~~-dg~i~iw~~ 634 (1097)
..+..|++||+.+++............ .+.+++|+|||+.|+..+. +|...||.+
T Consensus 315 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 315 KIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp --CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 456789999999887644333221000 4678999999998887664 666666654
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=3e-17 Score=202.98 Aligned_cols=330 Identities=9% Similarity=0.017 Sum_probs=214.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCC-C--CcceEEEcCCCCEEEEEECC---------CcEE
Q 001336 563 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGL-Q--ASPCIRFNKEGILLAVSTND---------NGIK 630 (1097)
Q Consensus 563 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~--~v~~v~~s~~~~~l~s~~~d---------g~i~ 630 (1097)
....+.|+|++.+++++ |+.|++||+.+++....+..+... . ....++|||||++|+.++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 34578999999888886 899999999999988777765321 1 12348999999999998876 4455
Q ss_pred EEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCccccccc
Q 001336 631 ILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEA 710 (1097)
Q Consensus 631 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1097)
+||+.++. .. .+
T Consensus 96 ~~d~~~~~-~~-~l------------------------------------------------------------------ 107 (740)
T 4a5s_A 96 IYDLNKRQ-LI-TE------------------------------------------------------------------ 107 (740)
T ss_dssp EEETTTTE-EC-CS------------------------------------------------------------------
T ss_pred EEECCCCc-EE-Ec------------------------------------------------------------------
Confidence 77776651 10 00
Q ss_pred ccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCC
Q 001336 711 VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP 790 (1097)
Q Consensus 711 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~ 790 (1097)
..+...+...+|||||+.|+.+. ++.|.+|++..+
T Consensus 108 -------------------------~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~------------------- 142 (740)
T 4a5s_A 108 -------------------------ERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL------------------- 142 (740)
T ss_dssp -------------------------SCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS-------------------
T ss_pred -------------------------ccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCC-------------------
Confidence 11345688999999999998884 678998876532
Q ss_pred CCCccccccCCCC------CCC---------CCeeEEEEccCCCEEEEEe-C-C--------------------------
Q 001336 791 PSGILMTNDISDT------NPE---------DAVPCFALSKNDSYVMSAS-G-G-------------------------- 827 (1097)
Q Consensus 791 ~~~~~~~~~~~~~------~h~---------~~v~~l~~s~dg~~la~~s-d-g-------------------------- 827 (1097)
........+. ++. ....++.|||||++||.++ | .
T Consensus 143 ---~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp 219 (740)
T 4a5s_A 143 ---PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYP 219 (740)
T ss_dssp ---CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECC
T ss_pred ---ceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCC
Confidence 2111111110 011 2224589999999999875 2 2
Q ss_pred ---------eEEEEEcCC---Cc--eeEEeC------CCCCCeEEEEEeCCCCCEEEEEEC----CCcEEEEEcccce--
Q 001336 828 ---------KISLFNMMT---FK--TMTTFM------PPPPAATFLAFHPQDNNIIAIGME----DSSIQIYNVRVDE-- 881 (1097)
Q Consensus 828 ---------~i~iwd~~~---~~--~~~~~~------~~~~~i~~l~~sp~~~~~la~g~~----dg~v~vwd~~~~~-- 881 (1097)
+|++||+.+ ++ ....+. ++...+..++|+| |+++++.... +..|++||+.+++
T Consensus 220 ~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~ 298 (740)
T 4a5s_A 220 KAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGR 298 (740)
T ss_dssp BTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTE
T ss_pred CCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccc
Confidence 478899988 73 223343 2667799999999 8887666543 2379999999887
Q ss_pred --EEE--Ee--cccccCeE-----EEEEecCCCEEE-EEeC-CC--cEEEEEcCCCcccceeeEeecCCCCCCccCCeEE
Q 001336 882 --VKT--KL--KGHQKRIT-----GLAFSNTLNVLV-SSGA-DS--QLCVWSTDGWEKQASKFLTIPNGRTASALADTRV 946 (1097)
Q Consensus 882 --~~~--~l--~~h~~~V~-----~l~~s~dg~~l~-s~~~-Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l 946 (1097)
+.. .+ .+|...|. .++|+|||+.|+ ..+. +| .|++||+.+++. .++..+.. .+..+
T Consensus 299 ~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-----~~lT~g~~----~v~~~ 369 (740)
T 4a5s_A 299 WNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-----TFITKGTW----EVIGI 369 (740)
T ss_dssp EEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-----EESCCSSS----CEEEE
T ss_pred cceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-----EecccCCE----EEEEE
Confidence 322 12 34655444 788999999887 6654 33 588888887552 23333322 24443
Q ss_pred EEcCCCcEEEE-EeC-------CeEEEEeCCCcceeeeeecc--CCCCCEEEEEEecCCCEEEEEecC---CeEEEEeCC
Q 001336 947 QFHLDQTHLLA-VHE-------TQIAIYEAPKLECLKQFVPR--EASGPITHATYSCDSQSIYVAFEE---GSVGVLTAS 1013 (1097)
Q Consensus 947 ~~s~dg~~l~~-~~d-------~~v~vwd~~~~~~~~~~~~~--~h~~~v~~v~~s~dg~~l~s~s~D---g~v~vwd~~ 1013 (1097)
. ++|++.|+. +.. ..|+..++..+.....+... +....+..+.||+||++++..... ..+.+++..
T Consensus 370 ~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~ 448 (740)
T 4a5s_A 370 E-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV 448 (740)
T ss_dssp E-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred E-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence 3 244666665 432 24555566554433233321 224578899999999987755543 468888888
Q ss_pred CCceeeee
Q 001336 1014 TLRLRCRI 1021 (1097)
Q Consensus 1014 ~~~~~~~~ 1021 (1097)
+++....+
T Consensus 449 ~~~~~~~l 456 (740)
T 4a5s_A 449 NDKGLRVL 456 (740)
T ss_dssp TTEEEEEE
T ss_pred CCcEEEEe
Confidence 77655443
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=1.2e-17 Score=186.90 Aligned_cols=284 Identities=12% Similarity=0.075 Sum_probs=191.3
Q ss_pred EEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEE-EECC
Q 001336 324 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV-AYSK 402 (1097)
Q Consensus 324 ~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las-~~~d 402 (1097)
.++++++++ ++++++.++.|.+||..+++.+.... .+....+..++|+|||+++++ +..+
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~s~dg~~~~v~~~~~ 64 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCV------------------MPDKFGPGTAMMAPDNRTAYVLNNHY 64 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEE------------------CSSCCSSCEEEECTTSSEEEEEETTT
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEe------------------cCCCCCCceeEECCCCCEEEEEeCCC
Confidence 456777776 67889999999999999987654311 112225778999999997655 4568
Q ss_pred CEEEEEEccCCeeeeeeeeeecc-----cCcEEEEEEecCCCcEEEEEEeCC------------CcEEEEECCCCce---
Q 001336 403 HIVHLYTYHGGDELRNHLEIEAH-----VGSVNDLAFSYPNKQLSVVTCGED------------RVIKVWDAVTGTK--- 462 (1097)
Q Consensus 403 g~i~iwd~~~~~~~~~~~~l~~h-----~~~V~~l~~s~d~~~~~l~s~s~d------------~~i~iwd~~~~~~--- 462 (1097)
+.|.+||+.+++.+.... + ++ ...+.+++|+|||+ ++++++.+ +.|.+||+.+++.
T Consensus 65 ~~i~~~d~~t~~~~~~~~-~-~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 140 (349)
T 1jmx_B 65 GDIYGIDLDTCKNTFHAN-L-SSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP 140 (349)
T ss_dssp TEEEEEETTTTEEEEEEE-S-CCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC
T ss_pred CcEEEEeCCCCcEEEEEE-c-ccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCccccce
Confidence 999999999987654321 1 22 23478899999999 67777754 8999999988543
Q ss_pred eEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCC---------------------C---ceE
Q 001336 463 QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG---------------------H---SST 518 (1097)
Q Consensus 463 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------------~---~v~ 518 (1097)
+..+.. ...+.+++| +++|+ +++++. .|.+||..+++....+.... . ...
T Consensus 141 ~~~~~~-~~~~~~~~~--s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (349)
T 1jmx_B 141 VRTFPM-PRQVYLMRA--ADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY 214 (349)
T ss_dssp SEEEEC-CSSCCCEEE--CTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred eeeccC-CCcccceeE--CCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeee
Confidence 344443 345777888 55667 555544 49999998877655544321 0 234
Q ss_pred EEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeE-EecCCCCcceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceE
Q 001336 519 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR-TYHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNVNLL 596 (1097)
Q Consensus 519 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~ 596 (1097)
.+++++++........ ....+..+|..+++... .+.... ..+..++++| ++++++++ ++.|++||+.+++.+
T Consensus 215 ~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~ 288 (349)
T 1jmx_B 215 TIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADLT-ELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLI 288 (349)
T ss_dssp EEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEECS-SCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEE
T ss_pred eeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccCC-CcceeeEecCCCCCEEEEE--cCeEEEEECccCeEE
Confidence 4566655432211100 01123335555554221 122222 3678899999 99999988 889999999999988
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecc
Q 001336 597 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVES 646 (1097)
Q Consensus 597 ~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 646 (1097)
..+... ..+.+++|+|++++|++++.++.|++||..++ +.+..+..
T Consensus 289 ~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~-~~~~~~~~ 334 (349)
T 1jmx_B 289 KAANLD---HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNIKL 334 (349)
T ss_dssp EEEECS---SCCCEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEEEC
T ss_pred EEEcCC---CCccceEECCCCCEEEEecCCCeEEEEecccc-ceeeeeec
Confidence 888643 24679999999998888888999999999888 55555543
No 162
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.80 E-value=1.3e-16 Score=179.23 Aligned_cols=271 Identities=13% Similarity=0.145 Sum_probs=184.3
Q ss_pred EEEEEe----CCCeEEEEEcC--CCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECC----C
Q 001336 334 LLVVGT----NMGDVMLWEVG--SRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK----H 403 (1097)
Q Consensus 334 lla~gs----~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~d----g 403 (1097)
.+.+|+ .++.|.+|+++ +++..... .. +...+..++|+|||++|++++.+ +
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~------------------~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~ 75 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLS------------------DA-EVANPSYLIPSADGKFVYSVNEFSKDQA 75 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEE------------------EE-ECSCCCSEEECTTSSEEEEEECCSSTTC
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEee------------------cc-cCCCCceEEECCCCCEEEEEEccCCCCC
Confidence 345664 35689999774 45433210 11 56678889999999999999886 7
Q ss_pred EEEEEEccCC-eeeeeeeeeecccCcEEEEEEecCCCcEEEEEE-eCCCcEEEEECCCCceeEEe------ec-------
Q 001336 404 IVHLYTYHGG-DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTC-GEDRVIKVWDAVTGTKQYIF------EG------- 468 (1097)
Q Consensus 404 ~i~iwd~~~~-~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~------~~------- 468 (1097)
.|.+|++... ..+........+......+++ +++ +|+++ ..++.|.+|++.....+..+ .+
T Consensus 76 ~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~--~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~ 151 (361)
T 3scy_A 76 AVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGK--NIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKER 151 (361)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSS--EEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTT
T ss_pred cEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCC--EEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccc
Confidence 9999998763 223433344446667788888 777 45544 46889999999754333211 11
Q ss_pred -CCcCeEEEeecccCCccEEEE-EcCCCeEEEEEcCCCCc------e-------eeecCCCCceEEEEEccCCCEEEEee
Q 001336 469 -HESPVYSICPHHKENIQFIFS-TATDGKIKAWLYDNLGS------R-------VDYDAPGHSSTMMAYSADGARLFSCG 533 (1097)
Q Consensus 469 -h~~~v~~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~------~-------~~~~~~~~~v~~~~~s~~~~~l~~~~ 533 (1097)
+...+.+++| +++|+++++ ...++.|.+|+++.... . ............++|+|+|++++++.
T Consensus 152 ~~~~~~~~~~~--spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 229 (361)
T 3scy_A 152 QTMPHLHCVRI--TPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLIN 229 (361)
T ss_dssp CSSCCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred cCCCcceEEEE--CCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEc
Confidence 1234577888 556675544 45589999999886542 1 12223345678999999999888776
Q ss_pred eCCCCCceEEEEeCCCCee--eEEecCCC--CcceEEEEEcCCCCEEEEEeC--CCcEEEEECC--CCc--eEEEEecCC
Q 001336 534 TNKEGESYLVEWNESEGAV--KRTYHGLG--KRSVGVVQFDTTKNRFLAAGD--EFMIKFWDMD--NVN--LLASIDADG 603 (1097)
Q Consensus 534 ~~~~~~~~i~~wd~~~~~~--~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~--~~~--~~~~~~~~~ 603 (1097)
. .+..|.+||+.+++. +..+.... ......++|+|+|++|+++.. ++.|.+|+++ +++ .+..+..
T Consensus 230 ~---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-- 304 (361)
T 3scy_A 230 E---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-- 304 (361)
T ss_dssp T---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--
T ss_pred C---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--
Confidence 3 245799999987754 33332221 124678999999999977775 5899999986 455 3334433
Q ss_pred CCCCcceEEEcCCCCEEEEEE-CCCcEEEEEcC
Q 001336 604 GLQASPCIRFNKEGILLAVST-NDNGIKILANA 635 (1097)
Q Consensus 604 ~~~~v~~v~~s~~~~~l~s~~-~dg~i~iw~~~ 635 (1097)
...+..++|+|+|++|++++ .++.|.+|++.
T Consensus 305 -g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 305 -GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp -SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred -CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 23567999999999888887 67899997665
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.79 E-value=7.7e-18 Score=191.62 Aligned_cols=254 Identities=10% Similarity=-0.027 Sum_probs=177.6
Q ss_pred cCCCCCCeEE-----EEEccCCCEEEEEEC-CC--EEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeC
Q 001336 377 SSDYTASVNR-----VMWSPDGTLFGVAYS-KH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE 448 (1097)
Q Consensus 377 ~~~h~~~V~~-----v~~spd~~~las~~~-dg--~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~ 448 (1097)
+..|...+.. .+|||||++|++++. +| .|.+||+.+++... ...+|...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 5566666665 899999999999987 66 58889999887543 2345555555778999999 7899999
Q ss_pred CCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEE----------------------cCCCeEEEEEcCCCCc
Q 001336 449 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST----------------------ATDGKIKAWLYDNLGS 506 (1097)
Q Consensus 449 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------------------~~dg~i~iwd~~~~~~ 506 (1097)
++.|++||+.+++....+..+...+....+..++++..++.. ..+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 999999999999888777767666655555456777777642 2457899999987754
Q ss_pred eeeecCCCCceEEEEEcc-CCCEEEEeeeCCC--CCceEEEEeCCCCeeeEEecCCCC-cceEEEEEcCCCCEEEEEe-C
Q 001336 507 RVDYDAPGHSSTMMAYSA-DGARLFSCGTNKE--GESYLVEWNESEGAVKRTYHGLGK-RSVGVVQFDTTKNRFLAAG-D 581 (1097)
Q Consensus 507 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~ 581 (1097)
... ..+...+..+.|+| ||+.|+.+..... ....|.++|...+... .+..+.. ..+....|+|+|+.|+..+ .
T Consensus 181 ~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 181 TVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp EEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred EEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecC
Confidence 433 34455788999999 9999988775321 1446888898766543 3333332 2577889999999776654 2
Q ss_pred CC----cEEEEECCCCceEEEEecCCCC---CCcceEEEcCCCCEEEEE---------ECCCcEEEEEcCCC
Q 001336 582 EF----MIKFWDMDNVNLLASIDADGGL---QASPCIRFNKEGILLAVS---------TNDNGIKILANADG 637 (1097)
Q Consensus 582 dg----~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~s~~~~~l~s~---------~~dg~i~iw~~~~~ 637 (1097)
++ .|++||+.+++........+.. .....++|+|||+.|+.. ..+..|++||+.++
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 22 3999999998754433322100 012334799999887754 44568999998876
No 164
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.79 E-value=1e-17 Score=187.37 Aligned_cols=241 Identities=13% Similarity=0.051 Sum_probs=180.1
Q ss_pred EEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCC-CCeEEEEEeCCCCCEE-EEEECCCcEEEEEcccceEEEEec
Q 001336 811 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPP-PAATFLAFHPQDNNII-AIGMEDSSIQIYNVRVDEVKTKLK 887 (1097)
Q Consensus 811 ~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~~l-a~g~~dg~v~vwd~~~~~~~~~l~ 887 (1097)
.++++++++++++++ +++|++||+.+++.+..+..+. ..+..++|+| +++++ +++..++.|.+||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356788889999888 8999999999999888876443 2578999999 77755 455578999999999998887765
Q ss_pred cc------ccCeEEEEEecCCCEEEEEeCC------------CcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEc
Q 001336 888 GH------QKRITGLAFSNTLNVLVSSGAD------------SQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFH 949 (1097)
Q Consensus 888 ~h------~~~V~~l~~s~dg~~l~s~~~D------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 949 (1097)
.+ ...+..++|+|||++|++++.+ +.|.+||+.+++..... ...... ..+.+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~----~~~~~~~~s 156 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV--RTFPMP----RQVYLMRAA 156 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS--EEEECC----SSCCCEEEC
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee--eeccCC----CcccceeEC
Confidence 33 2337889999999999998865 89999999885533211 111111 247889999
Q ss_pred CCCcEEEEEeCCeEEEEeCCCcceeeeeeccC------------------------------------------------
Q 001336 950 LDQTHLLAVHETQIAIYEAPKLECLKQFVPRE------------------------------------------------ 981 (1097)
Q Consensus 950 ~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~------------------------------------------------ 981 (1097)
|||+ ++++ ++.|.+||..+++.+..+....
T Consensus 157 ~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 157 DDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 9999 5553 4559999999988776554221
Q ss_pred ------------------CCCCEEEEEEec-CCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEE
Q 001336 982 ------------------ASGPITHATYSC-DSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAG 1042 (1097)
Q Consensus 982 ------------------h~~~v~~v~~s~-dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~ 1042 (1097)
+...+.+++|+| ||++|+++ ++.|.+||+.+++.+..+... ..+. .++|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~--------~~~~--~~~~ 302 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD--------HTYY--CVAF 302 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS--------SCCC--EEEE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC--------CCcc--ceEE
Confidence 012456778889 99999988 889999999999887666522 1234 4588
Q ss_pred cCCCCCEEEEEecCCcEEEEecCCCCcccCC
Q 001336 1043 NPTDPNQFALGLTDGGVYIIEPLEAEGRWGT 1073 (1097)
Q Consensus 1043 ~p~~~~~l~s~~~Dg~v~~W~~~~~~~~~~~ 1073 (1097)
+| ++++|++++.++.|.+||+.+.+.....
T Consensus 303 s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 303 DK-KGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp CS-SSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred CC-CCCEEEEecCCCeEEEEeccccceeeee
Confidence 89 5677777888999999999877654443
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=1.2e-16 Score=179.75 Aligned_cols=248 Identities=9% Similarity=0.062 Sum_probs=172.3
Q ss_pred CCCCeEEEEEccCCCEEEEEECCCEEEEEEcc-CCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEe-----------
Q 001336 380 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYH-GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG----------- 447 (1097)
Q Consensus 380 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~-~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s----------- 447 (1097)
....+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+.+++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 33468889999999999999888 99999997 776433 1122211 235568999999843344553
Q ss_pred --CCCcEEEEECC-CCceeEEee----cCCcCeEEEeecccCCccEEEEEc-CCCeEEEEEcC-CCCcee--eecC--CC
Q 001336 448 --EDRVIKVWDAV-TGTKQYIFE----GHESPVYSICPHHKENIQFIFSTA-TDGKIKAWLYD-NLGSRV--DYDA--PG 514 (1097)
Q Consensus 448 --~d~~i~iwd~~-~~~~~~~~~----~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~--~~~~--~~ 514 (1097)
.++.+.+|++. +|+....+. .+...+.+++| +++|+++++++ .++.|++|+++ +++... .+.. +.
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVF--DPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEE--CCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 68999999997 576654443 25567889988 55667777665 46899999998 554322 2221 35
Q ss_pred CceEEEEEccCCCEEEEeeeCCCCCceEEEEeCC--CCeee---EEecCCC----C-c-------ceEEEE-EcCCCCEE
Q 001336 515 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNES--EGAVK---RTYHGLG----K-R-------SVGVVQ-FDTTKNRF 576 (1097)
Q Consensus 515 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~~---~~~~~~~----~-~-------~v~~~~-~~~~~~~l 576 (1097)
..+..++|+|+|++++++... +..|.+|++. +++.. ..+.... . . .+..++ |+|+|++|
T Consensus 193 ~~p~~~~~spdg~~l~v~~~~---~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALMEA---GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETT---TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCEeEECCCCCEEEEEECC---CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 578999999999999887632 3468887654 56542 2222111 1 1 377899 99999998
Q ss_pred EEEeCC-C-----cEEEEECC-CCceEEE---EecCCCCCCcceEEEcC---CCCEEEEEECC-CcEEEEEcCCC
Q 001336 577 LAAGDE-F-----MIKFWDMD-NVNLLAS---IDADGGLQASPCIRFNK---EGILLAVSTND-NGIKILANADG 637 (1097)
Q Consensus 577 ~~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~s~---~~~~l~s~~~d-g~i~iw~~~~~ 637 (1097)
+++..+ . .|.+|+++ ++++... ...+ ......++|+| +|++|++++.+ +.|.+|++...
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 877632 2 89999996 6765542 2222 33467899999 89999998864 89999998765
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.76 E-value=4.8e-16 Score=174.70 Aligned_cols=271 Identities=9% Similarity=0.093 Sum_probs=177.4
Q ss_pred eEEEE--eCCCCeeeE--EecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceEEEEecCCCCCCcceEEEcC
Q 001336 541 YLVEW--NESEGAVKR--TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD-NVNLLASIDADGGLQASPCIRFNK 615 (1097)
Q Consensus 541 ~i~~w--d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~ 615 (1097)
.|.+| |..++++.. .........+..++|+|++++|++++.+ .|.+|++. ++++........+ ....+++|+|
T Consensus 15 ~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~sp 92 (365)
T 1jof_A 15 AIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADT 92 (365)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTS
T ss_pred cEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECC
Confidence 35554 455665432 2211111256789999999999999887 99999997 7876554432111 2356799999
Q ss_pred CCCE--EEEEE-------------CCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccc
Q 001336 616 EGIL--LAVST-------------NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLG 680 (1097)
Q Consensus 616 ~~~~--l~s~~-------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1097)
+|++ ++++. .+|.+.+|++....+....+..
T Consensus 93 dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~---------------------------------- 138 (365)
T 1jof_A 93 NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQN---------------------------------- 138 (365)
T ss_dssp CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEE----------------------------------
T ss_pred CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEee----------------------------------
Confidence 9984 44543 5788888888632122211110
Q ss_pred cccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeecc-
Q 001336 681 ERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS- 759 (1097)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~- 759 (1097)
+. ..+...+.+++|+|||++++++..
T Consensus 139 ------------------------------------~~-----------------~~~~~~~~~~~~spdG~~l~~~~~~ 165 (365)
T 1jof_A 139 ------------------------------------YE-----------------YQENTGIHGMVFDPTETYLYSADLT 165 (365)
T ss_dssp ------------------------------------EE-----------------CCTTCCEEEEEECTTSSEEEEEETT
T ss_pred ------------------------------------EE-----------------eCCCCcceEEEECCCCCEEEEEcCC
Confidence 00 012356789999999998877654
Q ss_pred CcEEEEeccCCCCCCccCccccccCCcccCCCCCcccc-ccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEcC-
Q 001336 760 NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT-NDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMM- 835 (1097)
Q Consensus 760 dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~h~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~- 835 (1097)
++.|.+|++.. ++++.. ..+....+...+..++|+|||+++++++ +++|.+|+++
T Consensus 166 ~~~v~~~~~~~---------------------~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 224 (365)
T 1jof_A 166 ANKLWTHRKLA---------------------SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp TTEEEEEEECT---------------------TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCEEEEEEECC---------------------CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeC
Confidence 67899997651 222110 0011001346689999999999998877 5889999875
Q ss_pred -CCceeE---Ee---CC----CCC------CeEEEE-EeCCCCCEEEEEECCC------cEEEEEcc-cceEEE---Eec
Q 001336 836 -TFKTMT---TF---MP----PPP------AATFLA-FHPQDNNIIAIGMEDS------SIQIYNVR-VDEVKT---KLK 887 (1097)
Q Consensus 836 -~~~~~~---~~---~~----~~~------~i~~l~-~sp~~~~~la~g~~dg------~v~vwd~~-~~~~~~---~l~ 887 (1097)
+++... .+ .. +.. .+..++ |+| |+++|+++..+. .|.+|++. +++... ...
T Consensus 225 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~ 303 (365)
T 1jof_A 225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP 303 (365)
T ss_dssp TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeee
Confidence 565421 22 11 121 488999 999 888887766433 89999996 666543 233
Q ss_pred ccccCeEEEEEec---CCCEEEEEeCC-CcEEEEEcCCC
Q 001336 888 GHQKRITGLAFSN---TLNVLVSSGAD-SQLCVWSTDGW 922 (1097)
Q Consensus 888 ~h~~~V~~l~~s~---dg~~l~s~~~D-g~i~iwd~~~~ 922 (1097)
.+...+..++|+| ||++|++++.+ +.|.+|+++..
T Consensus 304 ~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred cCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 3555677899999 89999998875 89999999874
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=8.8e-16 Score=171.43 Aligned_cols=312 Identities=9% Similarity=0.073 Sum_probs=207.3
Q ss_pred CccEEEEEc------CCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeee------CCCCCceEEEEeCCCC
Q 001336 483 NIQFIFSTA------TDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGT------NKEGESYLVEWNESEG 550 (1097)
Q Consensus 483 ~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------~~~~~~~i~~wd~~~~ 550 (1097)
++.+++... .|+.|.+||..+++....+.....+ .++|+|||++++++.. .+..+..|.+||..+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 445555543 4789999999887766655544333 8999999999998863 1122457999999998
Q ss_pred eeeEEecCCC-----CcceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceEEE-EecCCCCCCcceEEEcCCC-CEEE
Q 001336 551 AVKRTYHGLG-----KRSVGVVQFDTTKNRFLAAGD--EFMIKFWDMDNVNLLAS-IDADGGLQASPCIRFNKEG-ILLA 621 (1097)
Q Consensus 551 ~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~~-~~l~ 621 (1097)
+.+..+.... ......++++|+|++|+++.. ++.|.+||+.+++.+.. +... ....+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~----~~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA----GCWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT----TEEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC----CcceeEEcCCCCeeEE
Confidence 8888775431 124556899999999999873 68999999999988877 6532 12235677765 6788
Q ss_pred EEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccc
Q 001336 622 VSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTD 701 (1097)
Q Consensus 622 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1097)
+.+.||.+.+|+.....+.......
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~~------------------------------------------------------- 192 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSRS------------------------------------------------------- 192 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEEC-------------------------------------------------------
T ss_pred EECCCCcEEEEEECCCCcEeeeccc-------------------------------------------------------
Confidence 8899999999988653222211100
Q ss_pred cCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCcccc
Q 001336 702 VKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATT 781 (1097)
Q Consensus 702 ~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 781 (1097)
..+|+... .. ..+.+++++..++..+.++.+.++|+.......
T Consensus 193 ------------~~~~~~~~------------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~------ 235 (361)
T 2oiz_A 193 ------------KQMFSVKD------------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV------ 235 (361)
T ss_dssp ------------CCCSCTTT------------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE------
T ss_pred ------------cceEcCCC------------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee------
Confidence 00111110 00 011124455555555667777777764221100
Q ss_pred ccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe------------CCeEEEEEcCCCceeEEeCCCCCC
Q 001336 782 NQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS------------GGKISLFNMMTFKTMTTFMPPPPA 849 (1097)
Q Consensus 782 ~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s------------dg~i~iwd~~~~~~~~~~~~~~~~ 849 (1097)
+..|++.......... .......++|+||++.+.++. .++|.+||+.+++.+.++..+.
T Consensus 236 ---~~~~~~~~~~~~~~~~----~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-- 306 (361)
T 2oiz_A 236 ---DGPWSLLNDEDKAKNW----VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-- 306 (361)
T ss_dssp ---EEEEESCCHHHHHTTC----EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--
T ss_pred ---cccccccCcccccccc----ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--
Confidence 0001111100000000 011122378999988877653 2479999999999999998776
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEcccc--eEEEEecccccCeEEEEEecCCC
Q 001336 850 ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD--EVKTKLKGHQKRITGLAFSNTLN 903 (1097)
Q Consensus 850 i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~--~~~~~l~~h~~~V~~l~~s~dg~ 903 (1097)
+.+++|+| ++++|++++. +.|.+||..++ +.+..+..+......++++|+|.
T Consensus 307 p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999 8889988886 99999999999 99999877777788999999985
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.74 E-value=1.4e-15 Score=169.84 Aligned_cols=219 Identities=11% Similarity=0.055 Sum_probs=153.9
Q ss_pred CeeEEEEccCCCEEEEEe---CCeEEEEEcCCCceeEE-eCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEccc-ceE
Q 001336 808 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMTT-FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-DEV 882 (1097)
Q Consensus 808 ~v~~l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~-~~~ 882 (1097)
....++|+|||++|+++. +++|.+||+.+++.+.+ +.. .....+.+.|++...+++.+.||.+.+|++.. ++.
T Consensus 109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~--~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~ 186 (361)
T 2oiz_A 109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA--AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKV 186 (361)
T ss_dssp CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG--TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSE
T ss_pred CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC--CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcE
Confidence 345689999999998876 36899999999988877 542 22333567774557888899999999999865 554
Q ss_pred EE------EecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecC------CCCCCccCCeEEEEcC
Q 001336 883 KT------KLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPN------GRTASALADTRVQFHL 950 (1097)
Q Consensus 883 ~~------~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~v~~l~~s~ 950 (1097)
.. .+..+..++ .+.+++++..++..+.++.|.++|+............+.. +..+ .....++|+|
T Consensus 187 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p--~g~~~~a~~~ 263 (361)
T 2oiz_A 187 ASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVP--GGYNLVGLHR 263 (361)
T ss_dssp EEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEE--CCSSCEEEET
T ss_pred eeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccccc--CCeeEEEEec
Confidence 42 222223332 3445788888888889999999999765422211111111 0000 1233489999
Q ss_pred CCcEEEEE-e-----------CCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCC--c
Q 001336 951 DQTHLLAV-H-----------ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL--R 1016 (1097)
Q Consensus 951 dg~~l~~~-~-----------d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~--~ 1016 (1097)
|++.++++ . .+.|.+||+.+++.+..+.. +. +.+++|+|||++|++++. ++|.|||..++ +
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~--~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~ 338 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG--RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPK 338 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC--TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCE
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec--CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcce
Confidence 99888874 3 24899999999999998873 33 899999999999998886 99999999999 8
Q ss_pred eeeeeCCCCcCCCCCCCceeeEEEEEcCC
Q 001336 1017 LRCRINPTAYLPTNPSLRVYPLVIAGNPT 1045 (1097)
Q Consensus 1017 ~~~~~~~~~~~~~~h~~~v~~l~i~~~p~ 1045 (1097)
.+.++... .. .+..++++|+
T Consensus 339 ~~~~i~~~-------G~--~P~~~~~~p~ 358 (361)
T 2oiz_A 339 LLRTIEGA-------AE--ASLQVQFHPV 358 (361)
T ss_dssp EEEEETTS-------CS--SEEEEEECCC
T ss_pred eeEEeccC-------CC--CcEEEEecCC
Confidence 88776311 12 2445588884
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=2.5e-16 Score=179.60 Aligned_cols=282 Identities=10% Similarity=-0.021 Sum_probs=186.6
Q ss_pred eeEEEEccCCCeEEEEEeCCC--eEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEE
Q 001336 322 VKSMDFHPVQQILLVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 399 (1097)
Q Consensus 322 V~~v~fspdg~~lla~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 399 (1097)
+.+++|||||++|+++...++ .|.+||+.+++.... ..++......+.|||||++|+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-------------------~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-------------------TEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC-------------------CCSSCBCTTTCEECTTSSEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe-------------------ecCCCCccccceECCCCCEEEEE
Confidence 788999999998876665544 688889888765331 22222223347899999999999
Q ss_pred ECCCEEEEEEccCCeeeeeeeeeecccCcEEE-------------------EEEecCCCcEEEEEE-----eCCCcEEEE
Q 001336 400 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVND-------------------LAFSYPNKQLSVVTC-----GEDRVIKVW 455 (1097)
Q Consensus 400 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~-------------------l~~s~d~~~~~l~s~-----s~d~~i~iw 455 (1097)
+.++.|++||+.+++... . ...+...... +.|+|+++. ++.. ..+..|++|
T Consensus 99 ~~~~~l~~~d~~~~~~~~-~--~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQV-I--YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ETTTEEEEEETTTCCEEE-E--EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEEE
T ss_pred EcCCcEEEEECCCCCcEE-E--EecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEEE
Confidence 999999999999886433 1 2223332222 356777773 4433 456789999
Q ss_pred ECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCC------CeEEEEEcCCCCceeeecCC-CCceEEEEEccCCCE
Q 001336 456 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATD------GKIKAWLYDNLGSRVDYDAP-GHSSTMMAYSADGAR 528 (1097)
Q Consensus 456 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~ 528 (1097)
|+.+++..... .+...+..+.|++. ++..|+..+.+ ..|.+||++........... ...+..++|+|+|++
T Consensus 174 d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~ 251 (396)
T 3c5m_A 174 DIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA 251 (396)
T ss_dssp ETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred ECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence 99988866544 46677888888541 44556555433 46888887655433332211 225788999999998
Q ss_pred EEEeeeCCC-CCceEEEEeCCCCeeeEEecCCCCcceEEEEEcC-CCCEEEEEe----------------CCCcEEEEEC
Q 001336 529 LFSCGTNKE-GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT-TKNRFLAAG----------------DEFMIKFWDM 590 (1097)
Q Consensus 529 l~~~~~~~~-~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----------------~dg~i~iwd~ 590 (1097)
|+..+.+.. ....|.+||+.+++........ ... +.|+| +|+.+++++ .++.|++||+
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 252 MAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp EEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred EEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 887765322 2245999999888654433222 223 88999 999888765 3478999999
Q ss_pred CCCceEEEEecCCCCC---------CcceEEEcCCCCEEEEEEC-CCcEEEEEc
Q 001336 591 DNVNLLASIDADGGLQ---------ASPCIRFNKEGILLAVSTN-DNGIKILAN 634 (1097)
Q Consensus 591 ~~~~~~~~~~~~~~~~---------~v~~v~~s~~~~~l~s~~~-dg~i~iw~~ 634 (1097)
.+++... +..+.... .+..++|+|+|+.|+.++. ++...+|.+
T Consensus 328 ~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 328 KAKSAQK-LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp TTTBCCE-EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccCceEE-ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 9887644 33221100 2567899999998887765 455555543
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.72 E-value=3.6e-16 Score=178.29 Aligned_cols=307 Identities=16% Similarity=0.070 Sum_probs=191.4
Q ss_pred eEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE
Q 001336 517 STMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL 596 (1097)
Q Consensus 517 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 596 (1097)
+..++|+|||++|+..... ++...|.+||+.+++......+... ....+.|+|+|+.|+.++.++.|++||+.+++..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~-~g~~~l~~~d~~~~~~~~l~~~~~~-~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDF-DGNRNYYLLNLETQQAVQLTEGKGD-NTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp TTSCCBCTTSCEEEEEECT-TSSCEEEEEETTTTEEEECCCSSCB-CTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eecCcCCCCCCEEEEEEec-CCCceEEEEECCCCcEEEeecCCCC-ccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 5678899999999887643 3455799999998876554333321 2333789999999999998889999999988776
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccc
Q 001336 597 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVG 676 (1097)
Q Consensus 597 ~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1097)
.....+.. |+++|..|+..+.++...+|..
T Consensus 116 ~~~~~~~~--------~~~~g~~l~~~~~~~~~~~~~~------------------------------------------ 145 (396)
T 3c5m_A 116 VIYTVDEE--------WKGYGTWVANSDCTKLVGIEIL------------------------------------------ 145 (396)
T ss_dssp EEEECCTT--------EEEEEEEEECTTSSEEEEEEEE------------------------------------------
T ss_pred EEEecccc--------cCCCCCEEEeccCCcccccccc------------------------------------------
Confidence 65553311 5666666665554433333220
Q ss_pred cccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeee
Q 001336 677 TSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILA 756 (1097)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~ 756 (1097)
...++|+++.++.
T Consensus 146 -------------------------------------------------------------------~~~~spdg~~~~~ 158 (396)
T 3c5m_A 146 -------------------------------------------------------------------KRDWQPLTSWEKF 158 (396)
T ss_dssp -------------------------------------------------------------------GGGCCCCCSHHHH
T ss_pred -------------------------------------------------------------------ccccCCCCcceee
Confidence 0123455555554
Q ss_pred e-----ccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEcc-CCCEEEEEe-C---
Q 001336 757 L-----ASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK-NDSYVMSAS-G--- 826 (1097)
Q Consensus 757 ~-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~la~~s-d--- 826 (1097)
. ..+..|.+|++. +++..... . +...+..+.|+| ||+.|+..+ +
T Consensus 159 ~~~~~~~~~~~l~~~d~~----------------------~g~~~~~~--~--~~~~~~~~~~sp~dg~~l~~~~~~~~~ 212 (396)
T 3c5m_A 159 AEFYHTNPTCRLIKVDIE----------------------TGELEVIH--Q--DTAWLGHPIYRPFDDSTVGFCHEGPHD 212 (396)
T ss_dssp HHHHHTCCCEEEEEEETT----------------------TCCEEEEE--E--ESSCEEEEEEETTEEEEEEEEECSCSS
T ss_pred eeeccCCCcceEEEEECC----------------------CCcEEeec--c--CCcccccceECCCCCCEEEEEecCCCC
Confidence 3 234556666443 23222111 1 456688999999 888777765 2
Q ss_pred ---CeEEEEEcCCCceeEEeCCCC--CCeEEEEEeCCCCCEEEEEECC-----CcEEEEEcccceEEEEecccccCeEEE
Q 001336 827 ---GKISLFNMMTFKTMTTFMPPP--PAATFLAFHPQDNNIIAIGMED-----SSIQIYNVRVDEVKTKLKGHQKRITGL 896 (1097)
Q Consensus 827 ---g~i~iwd~~~~~~~~~~~~~~--~~i~~l~~sp~~~~~la~g~~d-----g~v~vwd~~~~~~~~~l~~h~~~V~~l 896 (1097)
..|.+||+.+++.. .+..+. ..+..++|+| ++++|+.++.+ +.|++||+.+++...... ... .. +
T Consensus 213 ~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~ 287 (396)
T 3c5m_A 213 LVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-H 287 (396)
T ss_dssp SCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-E
T ss_pred CCCceEEEEECCCCcee-EeeccCCCccccceEECC-CCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-C
Confidence 36888998765543 333332 3578899999 88877766544 449999998886543222 111 23 8
Q ss_pred EEec-CCCEEEEEe----------------CCCcEEEEEcCCCcccceeeEeecCCCC-----CCccCCeEEEEcCCCcE
Q 001336 897 AFSN-TLNVLVSSG----------------ADSQLCVWSTDGWEKQASKFLTIPNGRT-----ASALADTRVQFHLDQTH 954 (1097)
Q Consensus 897 ~~s~-dg~~l~s~~----------------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~v~~l~~s~dg~~ 954 (1097)
.|+| ||+++++++ .+..|++||+.+++.. .+....... .....+..++|+|||++
T Consensus 288 ~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 364 (396)
T 3c5m_A 288 LMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ---KLCKHSTSWDVLDGDRQITHPHPSFTPNDDG 364 (396)
T ss_dssp EEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC---EEEECCCCCCCBTTBSSTTCCCCEECTTSSE
T ss_pred CccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE---EccCCCCccccccccccCCCCCceEccCCCe
Confidence 8999 999988765 3478999999886632 122111100 00012456789999999
Q ss_pred EEEEe--CC--eEEEEeCCCcceeee
Q 001336 955 LLAVH--ET--QIAIYEAPKLECLKQ 976 (1097)
Q Consensus 955 l~~~~--d~--~v~vwd~~~~~~~~~ 976 (1097)
|+.+. ++ .|+++++.+++....
T Consensus 365 l~~~s~~~~~~~l~~~~~~~~~~~~~ 390 (396)
T 3c5m_A 365 VLFTSDFEGVPAIYIADVPESYKHLE 390 (396)
T ss_dssp EEEEECTTSSCEEEEEECCTTCC---
T ss_pred EEEEecCCCCceEEEEEEcccccccc
Confidence 88742 34 455556665554433
No 171
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.70 E-value=5.9e-15 Score=164.74 Aligned_cols=263 Identities=11% Similarity=0.113 Sum_probs=180.5
Q ss_pred CCeeEEEEccCCCeEEEEEe--------CCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc
Q 001336 320 SAVKSMDFHPVQQILLVVGT--------NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 391 (1097)
Q Consensus 320 ~~V~~v~fspdg~~lla~gs--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 391 (1097)
..+..++| ||++++.+.. .++.|.+||+.+++... + ..+.+++|||
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp 68 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP 68 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence 45667778 8887765532 25789999998876432 2 4688999999
Q ss_pred CCCEEEEEECC---C--EEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeC------------------
Q 001336 392 DGTLFGVAYSK---H--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE------------------ 448 (1097)
Q Consensus 392 d~~~las~~~d---g--~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~------------------ 448 (1097)
||++||.++.+ + .|.+|++.+++... +..+.. +..++|+|||+ .|+.++.
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEEECCCC---------CCCC-
T ss_pred CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEcccceee
Confidence 99999988754 3 47788888876443 333334 99999999999 5565543
Q ss_pred ---------CCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCC-------eEEEEEcCCCCceeeecC
Q 001336 449 ---------DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDG-------KIKAWLYDNLGSRVDYDA 512 (1097)
Q Consensus 449 ---------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~ 512 (1097)
...|++||+.+++.+..+.. . .+..++| +++| +++++..++ ...+|.++ ......+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~--spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIW--HRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFE 215 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEE--ETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccC--CCCe-EEEEEecccccccccccccEEEeC-CCceEEecc
Confidence 25799999998887555554 3 7778888 4666 777775542 44566555 333333333
Q ss_pred CCCceEEEEEccCCCEEEEeeeCCC----CCceEEEEeCCCCeeeEEecCCCCcceEE-EEEcCCCCEEEEEeCCCcEEE
Q 001336 513 PGHSSTMMAYSADGARLFSCGTNKE----GESYLVEWNESEGAVKRTYHGLGKRSVGV-VQFDTTKNRFLAAGDEFMIKF 587 (1097)
Q Consensus 513 ~~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~i 587 (1097)
+ ..+..+ +|+|++|+..+.+.. ....|.+|| +++.......+.. .+.. +.|+ ++ .+++++.++.+++
T Consensus 216 ~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~l 287 (347)
T 2gop_A 216 K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR-GVGQAKIKD-GK-VYFTLFEEGSVNL 287 (347)
T ss_dssp E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS-EEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc-ccCCccEEc-Cc-EEEEEecCCcEEE
Confidence 3 344443 999999988775431 235788898 5555444444443 6775 8999 88 8888899999999
Q ss_pred EECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcE-EEEEcC
Q 001336 588 WDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI-KILANA 635 (1097)
Q Consensus 588 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i-~iw~~~ 635 (1097)
| +.+++....+. + ...|.+++|+| .++++++.++.. .+|.+.
T Consensus 288 ~-~~~g~~~~~~~-~--~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 288 Y-IWDGEIKPIAK-G--RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp E-EESSSEEEEEC-S--SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred E-EcCCceEEEec-C--CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9 87666544433 2 45788999999 677777777665 788776
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.69 E-value=5.1e-15 Score=163.42 Aligned_cols=252 Identities=13% Similarity=0.065 Sum_probs=185.8
Q ss_pred CCCeeEEEEccCCCEEEEEe-C------------------------CeEEEEEcCCCceeEEeC-CCCCCeEEEEEeCCC
Q 001336 806 EDAVPCFALSKNDSYVMSAS-G------------------------GKISLFNMMTFKTMTTFM-PPPPAATFLAFHPQD 859 (1097)
Q Consensus 806 ~~~v~~l~~s~dg~~la~~s-d------------------------g~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~~ 859 (1097)
-..+.+++++++|+++++.. + ++|.+||..+++.+..+. ++......+++++ +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 46789999999999998887 4 379999999898877765 3446789999999 8
Q ss_pred CCEEEEEECCCcEEEEEcccce-EEEEe---------cccccCeEEEEEec-CCCEEEEEe-CCCcEEEEEcCCCcccce
Q 001336 860 NNIIAIGMEDSSIQIYNVRVDE-VKTKL---------KGHQKRITGLAFSN-TLNVLVSSG-ADSQLCVWSTDGWEKQAS 927 (1097)
Q Consensus 860 ~~~la~g~~dg~v~vwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-dg~~l~s~~-~Dg~i~iwd~~~~~~~~~ 927 (1097)
++++++...++.|++|+..... .+..+ .++......++++| ++.++++.+ .++.|++|+... +...
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~- 179 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVT- 179 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEE-
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEE-
Confidence 8888888889999999976542 45555 34555789999999 888888886 689999999543 3211
Q ss_pred eeEeecCCC----CCCccCCeEEEEcCC-CcEEEEE-eCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEec------CC
Q 001336 928 KFLTIPNGR----TASALADTRVQFHLD-QTHLLAV-HETQIAIYEAPKLECLKQFVPREASGPITHATYSC------DS 995 (1097)
Q Consensus 928 ~~~~~~~~~----~~~~~~v~~l~~s~d-g~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~------dg 995 (1097)
.+...... .........++++|+ +.++++. .++.|++|+.++++.+..+....+...+.+++|+| +|
T Consensus 180 -~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g 258 (329)
T 3fvz_A 180 -QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNG 258 (329)
T ss_dssp -EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEEC
T ss_pred -EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCC
Confidence 11111000 001134688999999 5555553 67899999999999988887666778899999999 33
Q ss_pred CEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCCC
Q 001336 996 QSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1068 (1097)
Q Consensus 996 ~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~~ 1068 (1097)
+..++...+.+|++|+..+++.+..+.... ++...... ++++| ++.++++...+++|++|++....
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~----~~~~~p~~--ia~~~-dG~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVR----KHFDMPHD--IVASE-DGTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCSS----SCCSSEEE--EEECT-TSEEEEEESSSCCEEEEEEEECS
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCCC----CccCCeeE--EEECC-CCCEEEEECCCCEEEEEeCCccc
Confidence 333333445689999999999888775321 33444454 47888 67899999999999999997543
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=2.7e-14 Score=154.44 Aligned_cols=242 Identities=12% Similarity=0.108 Sum_probs=174.8
Q ss_pred CCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCC------CCCCeEEEEEeCCCCCEEEEEEC-CCcEEEEE
Q 001336 805 PEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMP------PPPAATFLAFHPQDNNIIAIGME-DSSIQIYN 876 (1097)
Q Consensus 805 h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~sp~~~~~la~g~~-dg~v~vwd 876 (1097)
+-..+.+++++++|+++++.. ++.|.+||.. ++.+..+.. +...+..+++++.++.++++... ++.|++||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 456789999999999888876 8999999986 666666642 33568999995326766666543 88999999
Q ss_pred cccceEEEEec-ccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEE
Q 001336 877 VRVDEVKTKLK-GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHL 955 (1097)
Q Consensus 877 ~~~~~~~~~l~-~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 955 (1097)
.+++.+..+. .+...+.+++++++|+++++...++.|.+||... +.. ..+... ... ..+..++++++|+++
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~--~~~~~~-~~~---~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVL--HKFGCS-KHL---EFPNGVVVNDKQEIF 178 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE--EEEECT-TTC---SSEEEEEECSSSEEE
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEE--EEeCCC-Ccc---CCcEEEEECCCCCEE
Confidence 5677676664 3446789999999999888888889999999654 211 111111 111 347899999999977
Q ss_pred EEE-eCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCC-eEEEEeCCCCceeeeeCCCCcCCCCCCC
Q 001336 956 LAV-HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEG-SVGVLTASTLRLRCRINPTAYLPTNPSL 1033 (1097)
Q Consensus 956 ~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg-~v~vwd~~~~~~~~~~~~~~~~~~~h~~ 1033 (1097)
++. .++.|++||.. ++.+..+...++...+..++++++|+++++...++ .|.+|+. +++.+..+.... .
T Consensus 179 v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~-------~ 249 (286)
T 1q7f_A 179 ISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV-------K 249 (286)
T ss_dssp EEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS-------C
T ss_pred EEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC-------C
Confidence 764 57899999974 55555565334446889999999999988888776 9999995 566665554211 1
Q ss_pred ceeeEEEEEcCCCCCEEEEEecCCcEEEEecCC
Q 001336 1034 RVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1066 (1097)
Q Consensus 1034 ~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~ 1066 (1097)
...+..++++| ++.++++ +.|++|++|++..
T Consensus 250 ~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 250 HAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp CSCEEEEEEET-TTEEEEE-ETTTEEEEEECSC
T ss_pred CCcceeEEECC-CCcEEEE-CCCCeEEEEEccc
Confidence 11234557888 6777776 6799999999865
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.67 E-value=5.2e-15 Score=181.23 Aligned_cols=252 Identities=9% Similarity=-0.030 Sum_probs=176.6
Q ss_pred cccCCCCCCeEEEEEccCCCEEEEE--ECCCEEEEEEccCCeeeeeeeeeecccCcEE---------EEEEe--cCCCcE
Q 001336 375 SLSSDYTASVNRVMWSPDGTLFGVA--YSKHIVHLYTYHGGDELRNHLEIEAHVGSVN---------DLAFS--YPNKQL 441 (1097)
Q Consensus 375 ~~~~~h~~~V~~v~~spd~~~las~--~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~---------~l~~s--~d~~~~ 441 (1097)
..+.+|...|..++|++++-++++. +.++...||....+...+ .+..|...+. ...|+ |||+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~-- 91 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGG-- 91 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSS--
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCC--
Confidence 3467899999999999887777777 558899999965444333 3556666665 66676 9999
Q ss_pred E-EEEEeC-CCcEEEEECC--CCceeEEeec-----CCcCeEEEeecccCCccEEEEEcCC----------CeEEEEEcC
Q 001336 442 S-VVTCGE-DRVIKVWDAV--TGTKQYIFEG-----HESPVYSICPHHKENIQFIFSTATD----------GKIKAWLYD 502 (1097)
Q Consensus 442 ~-l~s~s~-d~~i~iwd~~--~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~~~d----------g~i~iwd~~ 502 (1097)
. |+.++. +..|.+|++. .+.....+.. |...+.+++| ++||+.|++++.+ ..|++||+.
T Consensus 92 ~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~--spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 92 PLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVL--LPERGEVWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp CEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEE--ETTTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred eEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEE--CCCCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence 5 554443 5667777765 2034555655 6677888888 5667889888876 589999998
Q ss_pred CC-----Cceeeec-CCCCceEEEEEccCCCEEEEeeeCCC----CCceEEEEeCC-CC---eeeEEecCCCCcceEEEE
Q 001336 503 NL-----GSRVDYD-APGHSSTMMAYSADGARLFSCGTNKE----GESYLVEWNES-EG---AVKRTYHGLGKRSVGVVQ 568 (1097)
Q Consensus 503 ~~-----~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~-~~---~~~~~~~~~~~~~v~~~~ 568 (1097)
+. .....+. .+...+..++|||||++|+..+.+.. ....|++||+. ++ +......++.. .+..+.
T Consensus 170 ~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~-~~~~~~ 248 (662)
T 3azo_A 170 GSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE-AIAQAE 248 (662)
T ss_dssp STTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB-CEEEEE
T ss_pred CCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc-eEcceE
Confidence 72 2333343 44457788999999999998876542 13579999998 56 44444443333 788999
Q ss_pred EcCCCCEEEEEeCCC--cEEEEECCCCceEEEEecCCCC------CCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001336 569 FDTTKNRFLAAGDEF--MIKFWDMDNVNLLASIDADGGL------QASPCIRFNKEGILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 569 ~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~ 635 (1097)
|+|+|+++++++.++ .|++||+.+++.......+... ..+..++|+|++.++++++. +.++||.+.
T Consensus 249 ~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 249 WAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred ECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 999999777777788 6777777677655444322111 01567899999999999998 999999543
No 175
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.67 E-value=7.3e-13 Score=155.09 Aligned_cols=275 Identities=16% Similarity=0.103 Sum_probs=195.7
Q ss_pred CeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEcc
Q 001336 332 QILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYH 411 (1097)
Q Consensus 332 ~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~ 411 (1097)
.+++++...++.|.++|..+++.+... . ....+..++|||||+++++++.|+.|.+||+.
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i-------------------~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~ 226 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVL-------------------D-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLW 226 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEE-------------------E-CSSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEE-------------------e-CCCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence 346778888999999999999877531 1 22357799999999999999999999999995
Q ss_pred --CCeeeeeeeeeecccCcEEEEEEe----cCCCcEEEEEEeCCCcEEEEECCCCceeEEeecC-----------CcCeE
Q 001336 412 --GGDELRNHLEIEAHVGSVNDLAFS----YPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH-----------ESPVY 474 (1097)
Q Consensus 412 --~~~~~~~~~~l~~h~~~V~~l~~s----~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-----------~~~v~ 474 (1097)
+++.+.. +... .....++|+ |||++ ++++...+++|.++|..+.+.+.++... ...+.
T Consensus 227 ~~t~~~v~~---i~~G-~~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva 301 (567)
T 1qks_A 227 MKEPTTVAE---IKIG-SEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 301 (567)
T ss_dssp SSSCCEEEE---EECC-SEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE
T ss_pred CCCCcEeEE---EecC-CCCceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceE
Confidence 6665543 3332 236789999 69995 4455556799999999999998876522 12566
Q ss_pred EEeecccCCccEEEEEcCCCeEEEEEcCCCCceeee-cCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeee
Q 001336 475 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 553 (1097)
Q Consensus 475 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 553 (1097)
.+..++.. ..+++....+|.|.++|.......... .........+.|+|+|++++++... ...|.++|..+++.+
T Consensus 302 ~i~~s~~~-~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~---sn~V~ViD~~t~kl~ 377 (567)
T 1qks_A 302 AILASHYR-PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA---RNKLVVIDTKEGKLV 377 (567)
T ss_dssp EEEECSSS-SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG---GTEEEEEETTTTEEE
T ss_pred EEEEcCCC-CEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCC---CCeEEEEECCCCcEE
Confidence 77665432 356777788899999998765432221 1233456788999999999887642 447999999999888
Q ss_pred EEecC-CCCc-ceEEE-EEcCCCCEEEEEe--CCCcEEEEECCC-------CceEEEEecCCCCCCcceEEEcCCCCEEE
Q 001336 554 RTYHG-LGKR-SVGVV-QFDTTKNRFLAAG--DEFMIKFWDMDN-------VNLLASIDADGGLQASPCIRFNKEGILLA 621 (1097)
Q Consensus 554 ~~~~~-~~~~-~v~~~-~~~~~~~~l~~~~--~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 621 (1097)
..+.. .... +-... .++|++..+++.+ .++.|.++|..+ .+.+.++...+. .-..+..+|+++++.
T Consensus 378 ~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~--g~~~i~~~p~~~~l~ 455 (567)
T 1qks_A 378 AIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG--GSLFIKTHPNSQYLY 455 (567)
T ss_dssp EEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEECCTTCSEEE
T ss_pred EEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC--CCEEEEeCCCCCeEE
Confidence 77654 2110 10112 2678755554443 568999999988 567888876432 224578999999998
Q ss_pred EEEC-------CCcEEEEEcCCC
Q 001336 622 VSTN-------DNGIKILANADG 637 (1097)
Q Consensus 622 s~~~-------dg~i~iw~~~~~ 637 (1097)
+... .++|.++|+.+.
T Consensus 456 v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 456 VDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EECTTCSSHHHHTCEEEEEGGGC
T ss_pred EecCCCCCcccCceEEEEECCcc
Confidence 8663 358999998754
No 176
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.66 E-value=1.1e-10 Score=145.21 Aligned_cols=533 Identities=8% Similarity=0.035 Sum_probs=320.7
Q ss_pred CCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEE
Q 001336 319 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 398 (1097)
Q Consensus 319 ~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 398 (1097)
...|.++...++|... +|+.+| +..||..+++.... ... .......|.++...++|++.+.
T Consensus 87 ~n~I~~i~~d~~g~lW--igT~~G-l~~yd~~~~~f~~~------~~~----------~~~~~~~i~~i~~d~~g~lwi~ 147 (795)
T 4a2l_A 87 NDISRIVKTDSQGRVW--IGTRDG-LSRYDEEKDIFQNF------FYE----------KNGKHLQVNGIEEISPEQLLIS 147 (795)
T ss_dssp CSCEEEEEECTTSCEE--EEESSC-EEEEETTTTEEEEE------CCE----------ETTEECCCCEEEEEETTEEEEE
T ss_pred ccceeEEEECCCCCEE--EEeCCc-hheeCCCCCeEEec------ccc----------ccCCCceEEEEEECCCCCEEEE
Confidence 3569999999999843 455554 89999877653221 000 0000012889998888876664
Q ss_pred EECCCEEEEEEccCCeeeeeeeeeecc-cCc-EEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEe-ecCCcCeEE
Q 001336 399 AYSKHIVHLYTYHGGDELRNHLEIEAH-VGS-VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGHESPVYS 475 (1097)
Q Consensus 399 ~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~-V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~ 475 (1097)
. . +.|..||..+++... . ..++ ... |.++...+++. |..++.++.|..||..+++..... ..+...|.+
T Consensus 148 t-~-~gl~~~~~~~~~~~~-~--~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~ 219 (795)
T 4a2l_A 148 T-P-EGLIMFDIKESKFID-D--SFSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQA 219 (795)
T ss_dssp E-T-TEEEEEETTTTEEEC-S--SSCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred E-C-CceEEEECCCCEEEe-c--cCCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence 4 4 458999987765321 1 0111 123 88888888876 445666656999998777654321 123456887
Q ss_pred EeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecC-------CCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCC
Q 001336 476 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-------PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 548 (1097)
Q Consensus 476 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 548 (1097)
+.. +.++. |..++.++-+..||..+......... ....|.++...++|...+... . -|.+||..
T Consensus 220 i~~--d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~-----Gl~~~~~~ 290 (795)
T 4a2l_A 220 ILQ--QSPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-N-----DLNIYHEG 290 (795)
T ss_dssp EEE--EETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-S-----CEEEEETT
T ss_pred EEE--cCCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-C-----hhheEcCC
Confidence 765 44444 44455444588888765443322111 234689999999888766542 2 28899988
Q ss_pred CCeeeEEecC------CCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC----CCCCCcceEEEcCCCC
Q 001336 549 EGAVKRTYHG------LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD----GGLQASPCIRFNKEGI 618 (1097)
Q Consensus 549 ~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~v~~s~~~~ 618 (1097)
++........ .....|.++...++|. |..|+.++-|..|+..++......... -....|.++...++|.
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 7765443221 1224688999988876 556777778999987665533222111 0134578888888776
Q ss_pred EEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCC
Q 001336 619 LLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRN 698 (1097)
Q Consensus 619 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1097)
+ -.|+.++-|..|+..++. ...+......
T Consensus 370 l-WiGt~~~Gl~~~~~~~~~--~~~~~~~~~~------------------------------------------------ 398 (795)
T 4a2l_A 370 L-WIGTNDGGLNLYNPITQR--FTSYTLQEDE------------------------------------------------ 398 (795)
T ss_dssp E-EEEESSSCEEEECTTTCC--EEEECCC---------------------------------------------------
T ss_pred E-EEEECCCCeEEEcCCCCc--EEEEecCCCC------------------------------------------------
Confidence 4 457777778888876541 1111100000
Q ss_pred ccccCcccccccccccccccccccCCCceeeEeccCC-CcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccC
Q 001336 699 FTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPD-NLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTG 777 (1097)
Q Consensus 699 ~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~ 777 (1097)
+. ......|.++...++|..|.+|+.++-+.+|+...+.+
T Consensus 399 -----------------------------------~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~---- 439 (795)
T 4a2l_A 399 -----------------------------------SARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV---- 439 (795)
T ss_dssp --------------------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE----
T ss_pred -----------------------------------cccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE----
Confidence 00 00235688888888888456666656677776543211
Q ss_pred ccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEcCCCceeEEeCC------CCCCeE
Q 001336 778 KATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMP------PPPAAT 851 (1097)
Q Consensus 778 ~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~------~~~~i~ 851 (1097)
+.+...... + ....|.++...++|.+.+... +.|.+||..+++....... ....|.
T Consensus 440 --------~~~~~~~~~-----l----~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 501 (795)
T 4a2l_A 440 --------ENFNQRNSQ-----L----VNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQIT 501 (795)
T ss_dssp --------EEECTTTSC-----C----SCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEE
T ss_pred --------EEeecCCCC-----c----CCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEE
Confidence 001100000 1 356799999999998776655 5688999887654332211 235689
Q ss_pred EEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEec-------ccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcc
Q 001336 852 FLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK-------GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEK 924 (1097)
Q Consensus 852 ~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~-------~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~ 924 (1097)
++...+ ++.+.+ |+. +-+..|+..+++. .+. .....|.++...++|.+.+... . .|..||.++++.
T Consensus 502 ~i~~d~-~g~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~ 574 (795)
T 4a2l_A 502 TLFRDS-HKRLWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQI 574 (795)
T ss_dssp EEEECT-TCCEEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEE
T ss_pred EEEECC-CCCEEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcE
Confidence 999988 676555 444 5588999887765 222 2345789999999998766543 4 588899877542
Q ss_pred cceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeeeeec-cCC-CCCE--EEEEEecCCCEEEE
Q 001336 925 QASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVP-REA-SGPI--THATYSCDSQSIYV 1000 (1097)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~-~~h-~~~v--~~v~~s~dg~~l~s 1000 (1097)
. ......+-. ...|.++..+++|.+.+++ ++.|..|+.++++.. .+.. .+- ...+ .++...++|.+++
T Consensus 575 ~---~~~~~~gl~--~~~i~~i~~d~~g~lWi~t-~~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~- 646 (795)
T 4a2l_A 575 K---RYNTTNGLP--NNVVYGILEDSFGRLWLST-NRGISCFNPETEKFR-NFTESDGLQSNQFNTASYCRTSVGQMYF- 646 (795)
T ss_dssp E---EECGGGTCS--CSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEE-EECGGGTCSCSCEEEEEEEECTTSCEEE-
T ss_pred E---EeCCCCCCc--hhheEEEEECCCCCEEEEc-CCceEEEcCCCCcEE-EcCCcCCCccccCccCceeECCCCeEEE-
Confidence 1 222222221 2457888899999876665 567888998866543 3321 111 2233 5677788887666
Q ss_pred EecCCeEEEEeC
Q 001336 1001 AFEEGSVGVLTA 1012 (1097)
Q Consensus 1001 ~s~Dg~v~vwd~ 1012 (1097)
|+.+| +..++-
T Consensus 647 g~~~G-l~~~~p 657 (795)
T 4a2l_A 647 GGING-ITTFRP 657 (795)
T ss_dssp EETTE-EEEECG
T ss_pred ecCCc-eEEEcH
Confidence 56667 445554
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.66 E-value=1e-14 Score=178.62 Aligned_cols=285 Identities=10% Similarity=-0.012 Sum_probs=188.4
Q ss_pred cCCCeeEEEEccCCCeEEEEE--eCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeE---------E
Q 001336 318 QGSAVKSMDFHPVQQILLVVG--TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN---------R 386 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~g--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~---------~ 386 (1097)
|...|..++|++++- +++.+ +.++...||....+..... +..|...|. .
T Consensus 22 ~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~~~~~~ 81 (662)
T 3azo_A 22 RSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFEYSGFP 81 (662)
T ss_dssp TCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGGTCCCC
T ss_pred cCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccccCCcc
Confidence 677899999998754 33455 5578999999644432221 444555554 5
Q ss_pred EEEc--cCCCE-EEEEEC-CCEEEEEEcc--C-Ceeeeeeeeeec-----ccCcEEEEEEecCCCcEEEEEEeCC-----
Q 001336 387 VMWS--PDGTL-FGVAYS-KHIVHLYTYH--G-GDELRNHLEIEA-----HVGSVNDLAFSYPNKQLSVVTCGED----- 449 (1097)
Q Consensus 387 v~~s--pd~~~-las~~~-dg~i~iwd~~--~-~~~~~~~~~l~~-----h~~~V~~l~~s~d~~~~~l~s~s~d----- 449 (1097)
.+|+ |||++ |+.++. +..|.+|++. + ++ ... +.. |...+..++|+|||+ .|++++.|
T Consensus 82 ~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~---l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~ 155 (662)
T 3azo_A 82 WAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRP---LTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGEG 155 (662)
T ss_dssp EEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEE---CSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSSS
T ss_pred ceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEe---ccCCccCCCCccccCcEECCCCC--EEEEEEecccCCC
Confidence 5565 99998 777654 5566666665 3 43 332 444 677899999999999 67777766
Q ss_pred -----CcEEEEECCC------CceeEEee-cCCcCeEEEeecccCCccEEEEEcCC--------CeEEEEEcC-CC---C
Q 001336 450 -----RVIKVWDAVT------GTKQYIFE-GHESPVYSICPHHKENIQFIFSTATD--------GKIKAWLYD-NL---G 505 (1097)
Q Consensus 450 -----~~i~iwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~-~~---~ 505 (1097)
..|++||+.+ ++. ..+. .+...+..++| ++||++|+.++.+ ..|.+||++ ++ .
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 156 PSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp TTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 5899999987 544 4555 55566777777 6677888877754 379999998 44 2
Q ss_pred ceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCc-------ceEEEEEcCCCCEEEE
Q 001336 506 SRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKR-------SVGVVQFDTTKNRFLA 578 (1097)
Q Consensus 506 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~ 578 (1097)
.......+...+..+.|+|||++++++.. ++...|.+||+.+++.......+... .+..++|++++..+++
T Consensus 233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred cEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 33333334568899999999995555433 33457888998777655444433221 1456889999999999
Q ss_pred EeCCCcEEEE--ECCCCceEEEEecCCCCCCcceE-EEcCCCCEEEEEECCCc--EEEEEcCCC
Q 001336 579 AGDEFMIKFW--DMDNVNLLASIDADGGLQASPCI-RFNKEGILLAVSTNDNG--IKILANADG 637 (1097)
Q Consensus 579 ~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~s~~~dg~--i~iw~~~~~ 637 (1097)
++. +.+++| |..+++ +..+..+ ...+..+ +++.+.-.+++++.+.. |.+|++.++
T Consensus 311 ~~~-~~~~l~~~d~~~~~-~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 311 HGK-GAAVLGILDPESGE-LVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EBS-SSCEEEEEETTTTE-EEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEc-CccEEEEEECCCCc-EEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 998 999999 655555 5666544 4456666 45443334444555544 445555565
No 178
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=8.6e-13 Score=154.48 Aligned_cols=189 Identities=12% Similarity=0.081 Sum_probs=142.2
Q ss_pred EEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcC--CCCceeeecCCCCceE
Q 001336 441 LSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD--NLGSRVDYDAPGHSST 518 (1097)
Q Consensus 441 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~ 518 (1097)
.++++...++.|.++|..+++.+.++.. ...+..+.| ++||+++++++.|+.|.+||+. +.+....+.. +....
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~--SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~ 243 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRL--SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEAR 243 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEE--CTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEE
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEE--CCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCc
Confidence 3788888999999999999999988864 335677887 5677899999999999999995 5555544443 44567
Q ss_pred EEEEc----cCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCC----------CCcceEEEEEcCCCCEEEEE-eCCC
Q 001336 519 MMAYS----ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL----------GKRSVGVVQFDTTKNRFLAA-GDEF 583 (1097)
Q Consensus 519 ~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~-~~dg 583 (1097)
.++|+ |||++++++... .+.+.++|..+.+.+..+... ....+..+..++++..++.. .++|
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~~---~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g 320 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAYW---PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 320 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEEE---TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred eeEEccccCCCCCEEEEEEcc---CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCC
Confidence 99999 699999988754 447999999999888876532 12256778888887655544 4789
Q ss_pred cEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEE-CCCcEEEEEcCCC
Q 001336 584 MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST-NDNGIKILANADG 637 (1097)
Q Consensus 584 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-~dg~i~iw~~~~~ 637 (1097)
.|.++|..+.+.+....... ......+.|+|++++++++. .++.|.++|..++
T Consensus 321 ~v~~vd~~~~~~~~v~~i~~-~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 321 KILLVDYTDLNNLKTTEISA-ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp EEEEEETTCSSEEEEEEEEC-CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred eEEEEecCCCccceeeeeec-cccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 99999998765433322211 23456889999999887765 5788999998876
No 179
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.65 E-value=6.2e-10 Score=138.62 Aligned_cols=592 Identities=10% Similarity=0.049 Sum_probs=341.1
Q ss_pred CCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEE
Q 001336 319 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 398 (1097)
Q Consensus 319 ~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 398 (1097)
...|+++.-.++|.. =.|+.+| +..||-.. ++.+...... + ..-....|.++...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~l--WigT~~G-L~ryDG~~--------f~~~~~~~~~---~---~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGNM--WFATYDG-VNKYDGYA--------FTVYQHNEDD---P---NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSCE--EEEETTE-EEEECSSC--------EEEECCCTTC---T---TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCCE--EEeecCc-CcccCCCc--------eEEEeCCCCC---C---CcccccceeEEEECCCCCEEE-
Confidence 457999999999973 3566666 55566321 2222211000 0 001245799999999988665
Q ss_pred EECCCEEEEEEccCCeeeeeeeeeecc-cCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecC-CcC-eEE
Q 001336 399 AYSKHIVHLYTYHGGDELRNHLEIEAH-VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH-ESP-VYS 475 (1097)
Q Consensus 399 ~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-~~~-v~~ 475 (1097)
|+.+| +..||..+++. ......... ...|.++...++|. +..++. +.|..||..+++......++ ... |.+
T Consensus 104 gT~~G-l~~yd~~~~~f-~~~~~~~~~~~~~i~~i~~d~~g~---lwi~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~ 177 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIF-QNFFYEKNGKHLQVNGIEEISPEQ---LLISTP-EGLIMFDIKESKFIDDSFSTAMHKTIAS 177 (795)
T ss_dssp EESSC-EEEEETTTTEE-EEECCEETTEECCCCEEEEEETTE---EEEEET-TEEEEEETTTTEEECSSSCHHHHTCCEE
T ss_pred EeCCc-hheeCCCCCeE-EeccccccCCCceEEEEEECCCCC---EEEEEC-CceEEEECCCCEEEeccCCCCCCcceEE
Confidence 45566 89999887653 221111010 01288888888886 344444 56899998776543211111 123 777
Q ss_pred EeecccCCccEEEEEcCCCeEEEEEcCCCCceeee-cCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeE
Q 001336 476 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR 554 (1097)
Q Consensus 476 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 554 (1097)
+.. +.++. |..++.++.|..|+..+....... ......|.++...+++.+.+....+ -|..||..+++...
T Consensus 178 i~~--d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~-----Gl~~~~~~~~~~~~ 249 (795)
T 4a2l_A 178 TLY--RQGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGA-----GLFLINPKTKEIKN 249 (795)
T ss_dssp EEE--EETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSS-----CEEEEETTTTEEEE
T ss_pred EEE--CCCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCC-----CeEEEeCCCCeEEE
Confidence 765 44444 444665556888887665433221 1224568888888888766654222 28899988776544
Q ss_pred EecCC------CCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-----CCCCCcceEEEcCCCCEEEEE
Q 001336 555 TYHGL------GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-----GGLQASPCIRFNKEGILLAVS 623 (1097)
Q Consensus 555 ~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~s~ 623 (1097)
..... ....|.++...++|...+ |+.+ -|.+||..+++........ -....|.++...++|. |-.|
T Consensus 250 ~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWig 326 (795)
T 4a2l_A 250 YLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLG 326 (795)
T ss_dssp ECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEE
T ss_pred eecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEE
Confidence 32211 123688898888886555 4444 5899998877654432211 1124688888888876 4457
Q ss_pred ECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccC
Q 001336 624 TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVK 703 (1097)
Q Consensus 624 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1097)
+.++-|..|+..++. +..+....
T Consensus 327 t~~~Gl~~~~~~~~~--~~~~~~~~------------------------------------------------------- 349 (795)
T 4a2l_A 327 TYFGGLNYYHPIRNR--FKNIRNIP------------------------------------------------------- 349 (795)
T ss_dssp ESSSCEEEECGGGGS--SEEECCCT-------------------------------------------------------
T ss_pred ECCCCeEEeCCCccc--ceEEcCCC-------------------------------------------------------
Confidence 777778888755431 11110000
Q ss_pred cccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCcccccc
Q 001336 704 PKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQ 783 (1097)
Q Consensus 704 ~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 783 (1097)
.+.......|.++...++|. |-.|+.++-+..|+.....+
T Consensus 350 -----------------------------~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~---------- 389 (795)
T 4a2l_A 350 -----------------------------YKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF---------- 389 (795)
T ss_dssp -----------------------------TSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE----------
T ss_pred -----------------------------CCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE----------
Confidence 00001245688888888887 44566665666665442211
Q ss_pred CCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeC----CCCCCeEEEEEeCC
Q 001336 784 APQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFM----PPPPAATFLAFHPQ 858 (1097)
Q Consensus 784 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~sp~ 858 (1097)
+.+........ ..+ ....|.+++..++|++|-.|. ++.|.+||..+++...-.. .+...|.++...+
T Consensus 390 --~~~~~~~~~~~-~~l----~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~- 461 (795)
T 4a2l_A 390 --TSYTLQEDESA-RGI----GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG- 461 (795)
T ss_dssp --EEECCC-------CC----SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-
T ss_pred --EEEecCCCCcc-cCC----CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-
Confidence 00000000000 001 246799999999998444555 6889999998876443321 1345689999887
Q ss_pred CCCEEEEEECCCcEEEEEcccceEEEEecc------cccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEee
Q 001336 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKG------HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTI 932 (1097)
Q Consensus 859 ~~~~la~g~~dg~v~vwd~~~~~~~~~l~~------h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~ 932 (1097)
++.+.+ |+.+ -+.+|+..+++....... +...|.++...++|.+.+... +.|..|+..+++. . ....
T Consensus 462 ~g~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~-~--~~~~ 534 (795)
T 4a2l_A 462 EGNLWL-GTLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI-Q--KASI 534 (795)
T ss_dssp SSCEEE-EESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE-E--ECCC
T ss_pred CCCEEE-EecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE-E--EecC
Confidence 666554 4454 588999887765432211 236789999999998776554 4588999877542 1 1000
Q ss_pred cCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeeeeeccC-CCCCEEEEEEecCCCEEEEEecCCeEEEEe
Q 001336 933 PNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPRE-ASGPITHATYSCDSQSIYVAFEEGSVGVLT 1011 (1097)
Q Consensus 933 ~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~-h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd 1011 (1097)
..........|.++..+++|.+.+.+.. .+..||..+++....-...+ ....|.++...++|.+.+++ ++-|..|+
T Consensus 535 ~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~ 611 (795)
T 4a2l_A 535 LPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFN 611 (795)
T ss_dssp SCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEE
T ss_pred CCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEc
Confidence 0111111246888999999997666544 78999987765432211112 14579999999999877655 35578899
Q ss_pred CCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCC
Q 001336 1012 ASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEA 1067 (1097)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~ 1067 (1097)
..+++.. .+....-++ ...+..-++...+ +|. |..|+.+| +..+++...
T Consensus 612 ~~~~~~~-~~~~~dGl~---~~~f~~~~~~~~~-~G~-l~~g~~~G-l~~~~p~~~ 660 (795)
T 4a2l_A 612 PETEKFR-NFTESDGLQ---SNQFNTASYCRTS-VGQ-MYFGGING-ITTFRPELL 660 (795)
T ss_dssp TTTTEEE-EECGGGTCS---CSCEEEEEEEECT-TSC-EEEEETTE-EEEECGGGC
T ss_pred CCCCcEE-EcCCcCCCc---cccCccCceeECC-CCe-EEEecCCc-eEEEcHHHc
Confidence 8776543 333222122 1223222334444 455 45567776 666776543
No 180
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.64 E-value=2.5e-13 Score=146.68 Aligned_cols=246 Identities=10% Similarity=0.072 Sum_probs=179.3
Q ss_pred CCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeee---ecccCcEEEEEEe-cCCCcEEEEEEeC-CCcE
Q 001336 378 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEI---EAHVGSVNDLAFS-YPNKQLSVVTCGE-DRVI 452 (1097)
Q Consensus 378 ~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l---~~h~~~V~~l~~s-~d~~~~~l~s~s~-d~~i 452 (1097)
.++-..+.+++++++|+++++...++.|.+||.. ++.+...... .+|...+..++++ +++. ++++... ++.|
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i 102 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQI 102 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEE
Confidence 3566789999999999988888889999999987 4434322111 1345678999995 6665 5555533 8899
Q ss_pred EEEECCCCceeEEeec-CCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeec--CCCCceEEEEEccCCCEE
Q 001336 453 KVWDAVTGTKQYIFEG-HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD--APGHSSTMMAYSADGARL 529 (1097)
Q Consensus 453 ~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l 529 (1097)
++|| .+++.+..+.. +...+.++++ +++|+++++...++.|.+||.+ +.....+. .....+..++++++|+.+
T Consensus 103 ~~~d-~~g~~~~~~~~~~~~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 103 QIYN-QYGQFVRKFGATILQHPRGVTV--DNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIF 178 (286)
T ss_dssp EEEC-TTSCEEEEECTTTCSCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred EEEC-CCCcEEEEecCccCCCceEEEE--eCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEE
Confidence 9999 67877776643 4456888988 5566788888888999999965 33333332 233468899999999877
Q ss_pred EEeeeCCCCCceEEEEeCCCCeeeEEecCCC-CcceEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceEEEEecCCCCCC
Q 001336 530 FSCGTNKEGESYLVEWNESEGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAGDEF-MIKFWDMDNVNLLASIDADGGLQA 607 (1097)
Q Consensus 530 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~ 607 (1097)
++... +..|.+||.. ++.+..+.... ...+..++++++|+.+++...++ .|.+|+. +++.+..+..+.....
T Consensus 179 v~~~~----~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 252 (286)
T 1q7f_A 179 ISDNR----AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQ 252 (286)
T ss_dssp EEEGG----GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSC
T ss_pred EEECC----CCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCc
Confidence 66543 4479999974 55666665432 13678899999998888887776 9999995 5677777765543344
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 608 SPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 608 v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
+.+++++|+|+++++ +.++.|++|++...
T Consensus 253 ~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 253 CFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred ceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 678999999987766 67999999997543
No 181
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.63 E-value=2e-13 Score=150.61 Aligned_cols=247 Identities=12% Similarity=0.095 Sum_probs=181.3
Q ss_pred CCeeEEEEccCCCeEEEEEeCC------------------------CeEEEEEcCCCceeeeeeeeEeeccccCcccccc
Q 001336 320 SAVKSMDFHPVQQILLVVGTNM------------------------GDVMLWEVGSRERIAVKSFKVWELGACSMPLQAS 375 (1097)
Q Consensus 320 ~~V~~v~fspdg~~lla~gs~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (1097)
..|.+|+++|+|+ ++++.+.+ +.|.+||..+++.+..
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------ 84 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence 5788999999998 55777666 4799999988876532
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCe-eeeeeeee------ecccCcEEEEEEec-CCCcEEEEEEe
Q 001336 376 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD-ELRNHLEI------EAHVGSVNDLAFSY-PNKQLSVVTCG 447 (1097)
Q Consensus 376 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~-~~~~~~~l------~~h~~~V~~l~~s~-d~~~~~l~s~s 447 (1097)
.-.++-.....++++|+|+++++...++.|++|+..... .+...... .++......++++| ++. ++++.+
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv~d~ 162 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFVSDG 162 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC--EEEEEC
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe--EEEEeC
Confidence 022455678999999999988888889999999986542 22211000 24555789999999 677 677776
Q ss_pred -CCCcEEEEECCCCceeEEeecC----------CcCeEEEeecccCC-ccEEEEEcCCCeEEEEEcCCCCceeeec--CC
Q 001336 448 -EDRVIKVWDAVTGTKQYIFEGH----------ESPVYSICPHHKEN-IQFIFSTATDGKIKAWLYDNLGSRVDYD--AP 513 (1097)
Q Consensus 448 -~d~~i~iwd~~~~~~~~~~~~h----------~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~ 513 (1097)
.++.|++|| .+|+.+..+... -.....+++. ++ +.++++...++.|++|+.++++....+. ..
T Consensus 163 ~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d--~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~ 239 (329)
T 3fvz_A 163 YCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALV--PHLDQLCVADRENGRIQCFKTDTKEFVREIKHASF 239 (329)
T ss_dssp SSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEE--TTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTT
T ss_pred CCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEE--CCCCEEEEEECCCCEEEEEECCCCcEEEEEecccc
Confidence 689999999 678887777432 2347889884 44 5788888889999999998776666553 33
Q ss_pred CCceEEEEEccCCCEEEEeeeC---CCCCceEEEEeCCCCeeeEEec---CCCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 001336 514 GHSSTMMAYSADGARLFSCGTN---KEGESYLVEWNESEGAVKRTYH---GLGKRSVGVVQFDTTKNRFLAAGDEFMIKF 587 (1097)
Q Consensus 514 ~~~v~~~~~s~~~~~l~~~~~~---~~~~~~i~~wd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 587 (1097)
...+..++++| +..+...+.. ......|.+||..+++.+..+. ++.. ....++++|+|..+++...++.|++
T Consensus 240 ~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I~~ 317 (329)
T 3fvz_A 240 GRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTVWK 317 (329)
T ss_dssp TTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCEEE
T ss_pred CCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEEEE
Confidence 45788999999 4444333211 1224479999999999988874 3333 6889999999977777778999999
Q ss_pred EECCC
Q 001336 588 WDMDN 592 (1097)
Q Consensus 588 wd~~~ 592 (1097)
|++..
T Consensus 318 ~~~~~ 322 (329)
T 3fvz_A 318 FTLTE 322 (329)
T ss_dssp EEEEE
T ss_pred EeCCc
Confidence 99753
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.63 E-value=1.3e-13 Score=169.64 Aligned_cols=250 Identities=10% Similarity=0.005 Sum_probs=177.9
Q ss_pred CCCCCCeEEEEEccCCCEEEEEECCC-----EEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCc-
Q 001336 378 SDYTASVNRVMWSPDGTLFGVAYSKH-----IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV- 451 (1097)
Q Consensus 378 ~~h~~~V~~v~~spd~~~las~~~dg-----~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~- 451 (1097)
.+|...+..++|||||++||.+..++ .|++||+.+++.+.. .+.. ..+..++|+|||+ .|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~~--~~~~~~~wspDg~--~l~~~~~~~~~ 194 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLER--VKFSCMAWTHDGK--GMFYNAYPQQD 194 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEEE--ECSCCEEECTTSS--EEEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cccC--cccceEEEEeCCC--EEEEEEECCcc
Confidence 35656789999999999999876644 899999999986542 1222 2367899999999 6777777665
Q ss_pred ---------------EEEEECCCCce--eEEee--cCCcCeEEEeecccCCccEEEEEcC-----CCeEEEEEcCC----
Q 001336 452 ---------------IKVWDAVTGTK--QYIFE--GHESPVYSICPHHKENIQFIFSTAT-----DGKIKAWLYDN---- 503 (1097)
Q Consensus 452 ---------------i~iwd~~~~~~--~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~---- 503 (1097)
|++|++.++.. ...+. .|...+..+.| ++||++|+.++. +..|.+||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE--cCCCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999988763 22233 34556777877 566788877654 67899999986
Q ss_pred --CC-ceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCe--eeEEecCCCC-cceEEEEEcCCCCEEE
Q 001336 504 --LG-SRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA--VKRTYHGLGK-RSVGVVQFDTTKNRFL 577 (1097)
Q Consensus 504 --~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~-~~v~~~~~~~~~~~l~ 577 (1097)
+. ....+..+...+.. .|+++|+.|+..+........|.+||+.++. ..+.+..+.. ..+..+.|++++..++
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 32 33444444444444 5889999988887544446689999998774 2344444433 3677888887777777
Q ss_pred EEeCCCc--EEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEE----CCCcEEEEEcCCCc
Q 001336 578 AAGDEFM--IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST----NDNGIKILANADGI 638 (1097)
Q Consensus 578 ~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~----~dg~i~iw~~~~~~ 638 (1097)
+...++. |++|++.+|+.+..+..+ ...+..++++|++..++... ..+.|++||+.++.
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7878874 667788778877777755 55678899999887666442 34789999998874
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.61 E-value=1e-13 Score=154.61 Aligned_cols=220 Identities=11% Similarity=0.096 Sum_probs=152.4
Q ss_pred CeeEEEEccCCCEEEEEe-C---Ce--EEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECC------------
Q 001336 808 AVPCFALSKNDSYVMSAS-G---GK--ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED------------ 869 (1097)
Q Consensus 808 ~v~~l~~s~dg~~la~~s-d---g~--i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~d------------ 869 (1097)
.+..++|||||++|+..+ + +. |.+|++.+++.......+ . +..++|+| |++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 467899999999999876 3 33 888898887766555433 3 99999999 88888887642
Q ss_pred ---------------CcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCC-------cEEEEEcCCCcccce
Q 001336 870 ---------------SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS-------QLCVWSTDGWEKQAS 927 (1097)
Q Consensus 870 ---------------g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg-------~i~iwd~~~~~~~~~ 927 (1097)
..|++||+.+++.+..+.. . .+..++|+||| +++++..++ ...+|.+.+++.
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~--- 210 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE--- 210 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE---
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce---
Confidence 5799999998887455554 3 78899999999 888776652 445555544331
Q ss_pred eeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eC--------CeEEEEeCCCcceeeeeeccCCCCCEEE-EEEecCCCE
Q 001336 928 KFLTIPNGRTASALADTRVQFHLDQTHLLAV-HE--------TQIAIYEAPKLECLKQFVPREASGPITH-ATYSCDSQS 997 (1097)
Q Consensus 928 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d--------~~v~vwd~~~~~~~~~~~~~~h~~~v~~-v~~s~dg~~ 997 (1097)
..+. .. . .+.. +||||++|+.. .+ ..|.+|| +++..... .+|...+.. +.|+ || +
T Consensus 211 ~~l~--~~-~----~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~--~~~~~~~~~~~~~s-dg-~ 275 (347)
T 2gop_A 211 EKMF--EK-V----SFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL--DEVDRGVGQAKIKD-GK-V 275 (347)
T ss_dssp EEEE--EE-E----SEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS--TTCCSEEEEEEEET-TE-E
T ss_pred EEec--cC-c----ceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEecc--ccCCcccCCccEEc-Cc-E
Confidence 1111 11 1 1333 39999988874 22 3688888 55543322 256678886 9999 98 9
Q ss_pred EEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcE-EEEecC
Q 001336 998 IYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGV-YIIEPL 1065 (1097)
Q Consensus 998 l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v-~~W~~~ 1065 (1097)
+++++.++.++|| +.+++...... +.+.|..+ +|+| .++++++.++.. .+|.+.
T Consensus 276 ~~~~~~~~~~~l~-~~~g~~~~~~~--------~~~~v~~~--~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 276 YFTLFEEGSVNLY-IWDGEIKPIAK--------GRHWIMGF--DVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEETTEEEEE-EESSSEEEEEC--------SSSEEEEE--EESS---SEEEEEECSSSCCEEEEES
T ss_pred EEEEecCCcEEEE-EcCCceEEEec--------CCCeEEee--eeeC---cEEEEEcCCCChHHheEeC
Confidence 9999999999999 88665433222 23456555 7777 577888877765 777765
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.60 E-value=2.6e-13 Score=150.28 Aligned_cols=271 Identities=13% Similarity=0.045 Sum_probs=185.9
Q ss_pred CCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEE
Q 001336 320 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 399 (1097)
Q Consensus 320 ~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 399 (1097)
..|.+++|+|++..+ +..+.++.+..|. ++.... +.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSA-VPIISESELQTIT---AEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGGCS-SCCCCGGGSCEEE---CEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCccce-eEEeecccCcccc---cceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 356788888888754 4446778888882 222211 34566678999999999988888
Q ss_pred ECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCC----CcEEEEECCCCceeEEee--cCCcCe
Q 001336 400 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED----RVIKVWDAVTGTKQYIFE--GHESPV 473 (1097)
Q Consensus 400 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~--~h~~~v 473 (1097)
..++.|.+||..+++... . ...+...+.+++|+++|+ ++++...+ +.|.+||..+++....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~-~--~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR-P--FVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE-E--EECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE-E--eeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 889999999998876433 1 224667899999999998 66776666 689999988877654443 244578
Q ss_pred EEEeecccCCccEEEEEcC------CCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeC
Q 001336 474 YSICPHHKENIQFIFSTAT------DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 547 (1097)
Q Consensus 474 ~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 547 (1097)
.++++ +++|.++++... .+.|..||.+...... +......+..++|+|+|+.++.+.. ....|.+||.
T Consensus 138 ~~i~~--d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVF--DSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEE--CTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEE--CCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 88888 556677776653 2455555544333222 2222235788999999997765542 1347999998
Q ss_pred CC-CeeeEE--------ecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC----CCCCcceEEEc
Q 001336 548 SE-GAVKRT--------YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG----GLQASPCIRFN 614 (1097)
Q Consensus 548 ~~-~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~v~~s 614 (1097)
.+ +..... +.++ ..+..++++++|+.+++...++.|.+||. +++.+..+..+. +...+.+++|+
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~ 288 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGH--EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFI 288 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSS--SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEEC
T ss_pred cCCCcCcccccceEEEecCCC--CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEEC
Confidence 63 332211 1222 25778999999998888888899999998 567777775432 11257899999
Q ss_pred CCCCEEEEEECCC
Q 001336 615 KEGILLAVSTNDN 627 (1097)
Q Consensus 615 ~~~~~l~s~~~dg 627 (1097)
|++..|++++.++
T Consensus 289 ~dg~~L~v~~~~g 301 (333)
T 2dg1_A 289 PGTNQLIICSNDI 301 (333)
T ss_dssp TTSCEEEEEEECG
T ss_pred CCCCEEEEEeCcc
Confidence 9987777666554
No 185
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=5.3e-09 Score=129.92 Aligned_cols=540 Identities=11% Similarity=0.045 Sum_probs=313.6
Q ss_pred CCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEcc--CCCEEE
Q 001336 320 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFG 397 (1097)
Q Consensus 320 ~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~~la 397 (1097)
..|.++...++|..| -+|+.++-+..||..+++.... .... ... ..-....|.++.... +|.+ .
T Consensus 66 n~I~~i~~d~~g~~l-Wigt~~~Gl~~~d~~~~~f~~~------~~~~----~~~--~~l~~~~i~~i~~d~~~~g~l-w 131 (781)
T 3v9f_A 66 NELNEVYTDPVQPVI-WIATQRAGLNAYNYETQSFSVY------QYNP----EDP--QSLITNDVTHITSSVQAGKGL-W 131 (781)
T ss_dssp SCEEEEEECSSSSEE-EEEESSSCEEEEETTTTEEEEE------CCCT----TCS--SSCSCSCEEEEEECSSTTSEE-E
T ss_pred cccceEEEcCCCCEE-EEEeCCCCcceECCCCCeEEee------cccc----CCC--CCcccCcceEEEecCccCCCE-E
Confidence 358999999988723 3466675699999887653221 0000 000 001234689998887 6654 4
Q ss_pred EEECCCEEEEEEccCCeeeeeeeee--e-cccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeec------
Q 001336 398 VAYSKHIVHLYTYHGGDELRNHLEI--E-AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG------ 468 (1097)
Q Consensus 398 s~~~dg~i~iwd~~~~~~~~~~~~l--~-~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~------ 468 (1097)
.++.++-|..||..+++. ...... . -....|.++...+++. |..++.++-|..||..+++...-...
T Consensus 132 i~t~~~gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 207 (781)
T 3v9f_A 132 VCTYYRGIEYLDIATGKF-THYNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNS 207 (781)
T ss_dssp EEESSSCEEEEETTTTEE-EEESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC-------
T ss_pred EEECCCCeeEEECCCCeE-EeeccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCCccc
Confidence 466444488899877653 221100 0 1234588888877776 55566666799999877654332110
Q ss_pred -CCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeec-------CCCCceEEEEEccCCCEEEEeeeCCCCCc
Q 001336 469 -HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-------APGHSSTMMAYSADGARLFSCGTNKEGES 540 (1097)
Q Consensus 469 -h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 540 (1097)
....|.++.. +.+|.+.+ ++.+ -+.+||..+........ .....|.++...++|.+.+.....
T Consensus 208 l~~~~i~~i~~--d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~----- 278 (781)
T 3v9f_A 208 LPGNDVRCIYK--DTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELN----- 278 (781)
T ss_dssp -CCSSEEEEEE--CTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSS-----
T ss_pred CCCCceeEEEE--cCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCC-----
Confidence 1346887765 55555555 4444 68888876543322111 123478999988888766543212
Q ss_pred eEEEEeCCCCeeeEEec-------------CCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe-------
Q 001336 541 YLVEWNESEGAVKRTYH-------------GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID------- 600 (1097)
Q Consensus 541 ~i~~wd~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------- 600 (1097)
-|.++|..++....... +-....|.++....+|. |-.|+.++-|..++..++.......
T Consensus 279 Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 357 (781)
T 3v9f_A 279 GIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNE 357 (781)
T ss_dssp CEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCS
T ss_pred CeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccccc
Confidence 28889987765432211 11223688888888875 5566767778899887655433211
Q ss_pred cCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccc
Q 001336 601 ADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLG 680 (1097)
Q Consensus 601 ~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1097)
..-....|.++...++|.+ ..|+.++-|..|+..++ ....+..
T Consensus 358 ~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~--~~~~~~~---------------------------------- 400 (781)
T 3v9f_A 358 SSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKR--VAIYNKE---------------------------------- 400 (781)
T ss_dssp SCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEE--EEECC------------------------------------
T ss_pred CCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCC--eEEEccC----------------------------------
Confidence 0011345788888877764 45666666888876543 1110000
Q ss_pred cccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccC
Q 001336 681 ERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN 760 (1097)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d 760 (1097)
+.......|.++...++|...+ ++.+
T Consensus 401 -----------------------------------------------------~~~~~~~~v~~i~~d~~g~lWi-gt~~ 426 (781)
T 3v9f_A 401 -----------------------------------------------------NRELLSNSVLCSLKDSEGNLWF-GTYL 426 (781)
T ss_dssp --------------------------------------------------------CCCSBEEEEEECTTSCEEE-EETT
T ss_pred -----------------------------------------------------CCCCCCcceEEEEECCCCCEEE-Eecc
Confidence 0001335688888888887544 5555
Q ss_pred cEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEcCCCcee
Q 001336 761 AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 840 (1097)
Q Consensus 761 g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~ 840 (1097)
+.+..|+.. +++........ .....|.++...++|.+.+... +.|.+||..+++..
T Consensus 427 ~Gl~~~~~~----------------------~~~~~~~~~~~-~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 427 GNISYYNTR----------------------LKKFQIIELEK-NELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVI 482 (781)
T ss_dssp EEEEEECSS----------------------SCEEEECCSTT-TCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCC
T ss_pred CCEEEEcCC----------------------CCcEEEeccCC-CCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEE
Confidence 556666433 22211111100 1356799999998888666544 67999998876654
Q ss_pred EEeCCC-----CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecc---cccCeEEEEEecCCCEEEEEeCCC
Q 001336 841 TTFMPP-----PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG---HQKRITGLAFSNTLNVLVSSGADS 912 (1097)
Q Consensus 841 ~~~~~~-----~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~---h~~~V~~l~~s~dg~~l~s~~~Dg 912 (1097)
...... ...|.++...+ ++.+. .|+.++-+..||..+++...-... ....|.++...++|.+.++. .+|
T Consensus 483 ~~~~~~~~~~~~~~i~~i~~d~-~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~G 559 (781)
T 3v9f_A 483 HHYDTSNSQLLENFVRSIAQDS-EGRFW-IGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEG 559 (781)
T ss_dssp EEECTTTSSCSCSCEEEEEECT-TCCEE-EEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTE
T ss_pred ecccCcccccccceeEEEEEcC-CCCEE-EEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCC
Confidence 433222 35689999887 66654 455544588888876654332211 23568899998888876654 466
Q ss_pred cEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeeeee-ccCC-CC--CEEE
Q 001336 913 QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFV-PREA-SG--PITH 988 (1097)
Q Consensus 913 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~-~~~h-~~--~v~~ 988 (1097)
.|..||..+++. .......+-. ...+.++..+++|.+.+++ .+.|..|+..+.+.. .+. ..+- .. ...+
T Consensus 560 lv~~~d~~~~~~---~~~~~~~gl~--~~~i~~i~~d~~g~lW~~t-~~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~ 632 (781)
T 3v9f_A 560 LVCFPSARNFDY---QVFQRKEGLP--NTHIRAISEDKNGNIWAST-NTGISCYITSKKCFY-TYDHSNNIPQGSFISGC 632 (781)
T ss_dssp EEEESCTTTCCC---EEECGGGTCS--CCCCCEEEECSSSCEEEEC-SSCEEEEETTTTEEE-EECGGGTCCSSCEEEEE
T ss_pred ceEEECCCCCcE---EEccccCCCC--CceEEEEEECCCCCEEEEc-CCceEEEECCCCceE-EecccCCccccccccCc
Confidence 548888877542 1222222221 1457889999999876665 445788888765432 222 1111 12 2356
Q ss_pred EEEecCCCEEEEEecCCeEEEEeCCC
Q 001336 989 ATYSCDSQSIYVAFEEGSVGVLTAST 1014 (1097)
Q Consensus 989 v~~s~dg~~l~s~s~Dg~v~vwd~~~ 1014 (1097)
+...+||++++ |+.+| +..++-..
T Consensus 633 ~~~~~~G~l~~-g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 633 VTKDHNGLIYF-GSING-LCFFNPDI 656 (781)
T ss_dssp EEECTTSCEEE-EETTE-EEEECSCC
T ss_pred eEECCCCEEEE-ECCCc-eEEEChhh
Confidence 77788888666 66677 55566543
No 186
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=1.7e-08 Score=125.35 Aligned_cols=595 Identities=12% Similarity=0.079 Sum_probs=338.0
Q ss_pred CCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEE
Q 001336 319 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 398 (1097)
Q Consensus 319 ~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 398 (1097)
...|++|.-.++|.. =.|+.+| +..||-.+ ++.+.... . +.. ...-....|.++...++|+.|-.
T Consensus 18 ~n~V~~I~qD~~G~l--WigT~~G-L~ryDG~~--------f~~~~~~~-~-~~~--~~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGFL--WFATEEG-LNKFDGTR--------FITYYKEE-Q-SSS--VQSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSCE--EEEESSC-EEEECSSS--------EEEECCCS-S-CSS--SCCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCCE--EEccCCc-CccccCCc--------eEEEEcCC-C-CCc--cccccccccceEEEcCCCCEEEE
Confidence 457899999999973 4566666 66666432 22222100 0 000 00012357999999988884556
Q ss_pred EECCCEEEEEEccCCeeeeeee-e-eec---ccCcEEEEEEec--CCCcEEEEEEeCCCcEEEEECCCCceeEEee----
Q 001336 399 AYSKHIVHLYTYHGGDELRNHL-E-IEA---HVGSVNDLAFSY--PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE---- 467 (1097)
Q Consensus 399 ~~~dg~i~iwd~~~~~~~~~~~-~-l~~---h~~~V~~l~~s~--d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---- 467 (1097)
|+.++-+..||..+++. .... . ... ....|.++.... ++. |..++.++.|..+|..+++......
T Consensus 83 gt~~~Gl~~~d~~~~~f-~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~ 158 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSF-SVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVP 158 (781)
T ss_dssp EESSSCEEEEETTTTEE-EEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCT
T ss_pred EeCCCCcceECCCCCeE-EeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCccc
Confidence 77774589999987653 2210 0 000 123688888877 665 5556655668999987765433211
Q ss_pred -cCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeee-------cCCCCceEEEEEccCCCEEEEeeeCCCCC
Q 001336 468 -GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-------DAPGHSSTMMAYSADGARLFSCGTNKEGE 539 (1097)
Q Consensus 468 -~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 539 (1097)
.....|.++.. +.+| .|..++.++-|..||..+....... ......|.++...++|.+.+... .
T Consensus 159 ~l~~~~i~~i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-----~ 230 (781)
T 3v9f_A 159 ALPSEQTWTATE--AEDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-----K 230 (781)
T ss_dssp TCSCCCEEEEEE--EETT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-----T
T ss_pred CCCccceEEEEE--CCCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-----C
Confidence 11345777765 4444 4555666656888887654332211 11234688999888888776542 1
Q ss_pred ceEEEEeCCCCeeeEEecC------CCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe-------cC----
Q 001336 540 SYLVEWNESEGAVKRTYHG------LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID-------AD---- 602 (1097)
Q Consensus 540 ~~i~~wd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~---- 602 (1097)
-|..||..+++....... .....|.++...++|. |..|+..+-|.++|..+++...... ..
T Consensus 231 -Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 308 (781)
T 3v9f_A 231 -GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNY 308 (781)
T ss_dssp -EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTT
T ss_pred -cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCC
Confidence 388999877654432211 1223688888887764 5556665678899988765432221 10
Q ss_pred -CCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCcccccccccc
Q 001336 603 -GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGE 681 (1097)
Q Consensus 603 -~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1097)
-....|.++...++|. |-.|+.++-|..++..+.. +..+......
T Consensus 309 ~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~------------------------------- 354 (781)
T 3v9f_A 309 SLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPT--FHTWSYSPTQ------------------------------- 354 (781)
T ss_dssp SBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCS--CEEEC----C-------------------------------
T ss_pred CCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCc--ceeeccCccc-------------------------------
Confidence 1134577888888775 4556666677777765431 1111000000
Q ss_pred ccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCc
Q 001336 682 RTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNA 761 (1097)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg 761 (1097)
..+.......|.++...++|. |..|+.++
T Consensus 355 --------------------------------------------------~~~~~l~~~~v~~i~~d~~g~-lWigt~~~ 383 (781)
T 3v9f_A 355 --------------------------------------------------MNESSLSNKVVSSVCDDGQGK-LWIGTDGG 383 (781)
T ss_dssp --------------------------------------------------CCSSCCSSSCEEEEEECTTSC-EEEEEBSS
T ss_pred --------------------------------------------------cccCCCCCcceEEEEEcCCCC-EEEEeCCC
Confidence 000001235688888888887 44555444
Q ss_pred EEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEcCCCceeE
Q 001336 762 VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMT 841 (1097)
Q Consensus 762 ~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~ 841 (1097)
-+..|+.....+ ..+. .. .. .....|.++...++|.+.+...++.|..++..+++...
T Consensus 384 Gl~~~~~~~~~~------------~~~~-~~-----~~----~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~ 441 (781)
T 3v9f_A 384 GINVFENGKRVA------------IYNK-EN-----RE----LLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQI 441 (781)
T ss_dssp CEEEEETTEEEE------------ECC---------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEE
T ss_pred cEEEEECCCCeE------------EEcc-CC-----CC----CCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEE
Confidence 566665432110 0000 00 00 14567999999988887775446789999987765433
Q ss_pred EeC--CCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEeccc-----ccCeEEEEEecCCCEEEEEeCCCcE
Q 001336 842 TFM--PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGH-----QKRITGLAFSNTLNVLVSSGADSQL 914 (1097)
Q Consensus 842 ~~~--~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h-----~~~V~~l~~s~dg~~l~s~~~Dg~i 914 (1097)
... .....|.++...+ ++. |..|+. +-|..||..+++........ ...|.++...++|.+.+. +.++.|
T Consensus 442 ~~~~~~~~~~v~~i~~d~-~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl 517 (781)
T 3v9f_A 442 IELEKNELLDVRVFYEDK-NKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGV 517 (781)
T ss_dssp CCSTTTCCCCEEEEEECT-TSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCE
T ss_pred eccCCCCCCeEEEEEECC-CCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCE
Confidence 221 1346789998887 565 445565 45889998876543322212 467899999988876664 443448
Q ss_pred EEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeeeeec-cC-CCCCEEEEEEe
Q 001336 915 CVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVP-RE-ASGPITHATYS 992 (1097)
Q Consensus 915 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~-~~-h~~~v~~v~~s 992 (1097)
..||..+++.. .+....+ .....|.++..+++|.+.+.+.+|-|..||..+++.. .+.. .+ ....|.++...
T Consensus 518 ~~~~~~~~~~~---~~~~~~~--l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d 591 (781)
T 3v9f_A 518 GIYTPDMQLVR---KFNQYEG--FCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISED 591 (781)
T ss_dssp EEECTTCCEEE---EECTTTT--CSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEEC
T ss_pred EEEeCCCCeEE---EccCCCC--CCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEE-EccccCCCCCceEEEEEEC
Confidence 88887764421 1111111 1125688999999999777666444488998876542 2221 11 13468889999
Q ss_pred cCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCCC
Q 001336 993 CDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1068 (1097)
Q Consensus 993 ~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~~ 1068 (1097)
++|.+.++ +.+| |..|+..+.+. ..+....-++. .....-++...+ +|. |..|+.+| +..+++....
T Consensus 592 ~~g~lW~~-t~~G-l~~~~~~~~~~-~~~~~~dGl~~---~~f~~~~~~~~~-~G~-l~~g~~~G-l~~f~p~~~~ 658 (781)
T 3v9f_A 592 KNGNIWAS-TNTG-ISCYITSKKCF-YTYDHSNNIPQ---GSFISGCVTKDH-NGL-IYFGSING-LCFFNPDIAI 658 (781)
T ss_dssp SSSCEEEE-CSSC-EEEEETTTTEE-EEECGGGTCCS---SCEEEEEEEECT-TSC-EEEEETTE-EEEECSCCGG
T ss_pred CCCCEEEE-cCCc-eEEEECCCCce-EEecccCCccc---cccccCceEECC-CCE-EEEECCCc-eEEEChhhcc
Confidence 99987665 4455 77788776543 33332221221 222222334444 455 55577777 6677776543
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.57 E-value=3.6e-13 Score=165.67 Aligned_cols=246 Identities=9% Similarity=-0.024 Sum_probs=171.9
Q ss_pred CeeEEEEccCCCeEEEEEeCCC----eEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEE
Q 001336 321 AVKSMDFHPVQQILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 396 (1097)
Q Consensus 321 ~V~~v~fspdg~~lla~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 396 (1097)
.+..++|||||++|+.+.+.+| .|++||+.+++.+.. . + ....+..++|+|||+.|
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~-----------------~--~~~~~~~~~wspDg~~l 185 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------L--ERVKFSCMAWTHDGKGM 185 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------E--EEECSCCEEECTTSSEE
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-c-----------------c--cCcccceEEEEeCCCEE
Confidence 5789999999998766655444 899999999986542 0 1 11236789999999999
Q ss_pred EEEECCCE----------------EEEEEccCCeee-eeeeeeecccCcEEEEEEecCCCcEEEEEEeC-----CCcEEE
Q 001336 397 GVAYSKHI----------------VHLYTYHGGDEL-RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-----DRVIKV 454 (1097)
Q Consensus 397 as~~~dg~----------------i~iwd~~~~~~~-~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~-----d~~i~i 454 (1097)
+.++.++. |++|++.+++.. ........|...+..+.|||||+ +|+.++. +..|++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~~l~~ 263 (710)
T 2xdw_A 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR--YVLLSIREGCDPVNRLWY 263 (710)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--EEEEEEECSSSSCCEEEE
T ss_pred EEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC--EEEEEEEccCCCccEEEE
Confidence 99988765 999999887522 11112223566688999999999 4555443 678999
Q ss_pred EECCC------Cc-eeEEeecCCcCeEEEeecccCCccEEEEEcC----CCeEEEEEcCCCCc--eeeecCCCC--ceEE
Q 001336 455 WDAVT------GT-KQYIFEGHESPVYSICPHHKENIQFIFSTAT----DGKIKAWLYDNLGS--RVDYDAPGH--SSTM 519 (1097)
Q Consensus 455 wd~~~------~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~--~~~~~~~~~--~v~~ 519 (1097)
||+.+ +. ....+..+...+... |++ +|..|+..+. ++.|.+||+.+... ...+..+.. .+..
T Consensus 264 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~ 340 (710)
T 2xdw_A 264 CDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEW 340 (710)
T ss_dssp EEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEE
T ss_pred EECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEE
Confidence 99987 53 456676776666553 443 4455554443 34699999887642 233333332 6788
Q ss_pred EEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEe----CCCcEEEEECCCCc
Q 001336 520 MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG----DEFMIKFWDMDNVN 594 (1097)
Q Consensus 520 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~ 594 (1097)
+.|++++.++++...+ +...|.+||+.+++.++.+..+.. .+..+.++|+++.++... ..+.|+.||+.+++
T Consensus 341 ~~~~~~~~lv~~~~~~--g~~~l~~~~~~~g~~~~~l~~~~~-~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 341 VACVRSNFLVLCYLHD--VKNTLQLHDLATGALLKIFPLEVG-SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTTEEEEEEEET--TEEEEEEEETTTCCEEEEECCCSS-EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEcCCEEEEEEEEC--CEEEEEEEECCCCCEEEecCCCCc-eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8998777666666543 355688999878887777777643 788889999987666432 45789999999887
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.56 E-value=2.5e-13 Score=166.53 Aligned_cols=249 Identities=11% Similarity=-0.053 Sum_probs=167.4
Q ss_pred CCCCCCeEEEEEccCCCEEEEE-----ECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCc-
Q 001336 378 SDYTASVNRVMWSPDGTLFGVA-----YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV- 451 (1097)
Q Consensus 378 ~~h~~~V~~v~~spd~~~las~-----~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~- 451 (1097)
.+|...+..++|||||++||.+ +.+..|++||+.+++.+.. ..+... ....++|+|||+ .|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~~--~~~~~~wspDg~--~l~~~~~d~~~ 191 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVIEGG--KYATPKWTPDSK--GFYYEWLPTDP 191 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-cccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence 4677789999999999999944 4457899999999875411 012211 126789999999 7888887766
Q ss_pred ------------EEEEECCCCc----eeEEeecCCcCeEEEeecccCCccEEEEEcCCC----eEEEEEcCCCCceeeec
Q 001336 452 ------------IKVWDAVTGT----KQYIFEGHESPVYSICPHHKENIQFIFSTATDG----KIKAWLYDNLGSRVDYD 511 (1097)
Q Consensus 452 ------------i~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~ 511 (1097)
|++|++.++. ++.....|...+..+.| ++||++|+.++.++ .|.+|+..++. ...+.
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~ 268 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL--SRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLV 268 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE--CTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE--CCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEee
Confidence 9999999876 33333445567888887 56667787776555 56666554333 33333
Q ss_pred CCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCee---eEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001336 512 APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV---KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFW 588 (1097)
Q Consensus 512 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 588 (1097)
.+...+....+ ++|. ++..+.....+..|.+||+.++.. ...+..+....+..++++ ++..+++...|+..++|
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 34444555556 6777 555543233467899999987753 333333324367778887 66677788889988887
Q ss_pred ECC-CCceEEEEecCCCCCCcceEEEcCCCCEEEEEE----CCCcEEEEEcCCCc
Q 001336 589 DMD-NVNLLASIDADGGLQASPCIRFNKEGILLAVST----NDNGIKILANADGI 638 (1097)
Q Consensus 589 d~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~----~dg~i~iw~~~~~~ 638 (1097)
.++ +++....+..+. ...+..++++|++..++... ..++|++||+.++.
T Consensus 346 ~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 346 VATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 654 455556555331 34577888999987776433 34789999998874
No 189
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.55 E-value=2.9e-11 Score=131.28 Aligned_cols=281 Identities=10% Similarity=0.056 Sum_probs=192.7
Q ss_pred CccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccC
Q 001336 738 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 817 (1097)
Q Consensus 738 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 817 (1097)
+...+.++++.++|+..++...++.|.+|+.. +......... +...+.+++++++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-----------------------~~~~~~~~~~--~~~~~~~i~~~~~ 67 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-----------------------GKITEYPLPT--PDAKVMCLTISSD 67 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------CCEEEEECSS--TTCCEEEEEECTT
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-----------------------CCeEEecCCc--ccCceeeEEECCC
Confidence 45679999999999987777767888888543 2222211111 3467899999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCcee-EEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEE-EecccccCeE
Q 001336 818 DSYVMSAS-GGKISLFNMMTFKTM-TTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKT-KLKGHQKRIT 894 (1097)
Q Consensus 818 g~~la~~s-dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~-~l~~h~~~V~ 894 (1097)
|.++++.. ++.|..|+.. ++.. ..+......+..+++++ +++++++...++.|.+||. +++... ....+...+.
T Consensus 68 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~ 144 (299)
T 2z2n_A 68 GEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPS 144 (299)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred CCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCc
Confidence 99888877 7889999986 3332 22222455789999999 7888887777889999998 555433 2333456789
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEEEEeCCCcce
Q 001336 895 GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLEC 973 (1097)
Q Consensus 895 ~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~vwd~~~~~~ 973 (1097)
.+++.++|.++++...++.|..||. +++.. ........ ..+..++++++|.+.++. .++.|.+||. +++.
T Consensus 145 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~---~~~~~~~~----~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 145 FITLGSDNALWFTENQNNAIGRITE-SGDIT---EFKIPTPA----SGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI 215 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECT-TCCEE---EEECSSTT----CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE---EeeCCCCC----CcceeEEECCCCCEEEEccCCceEEEECC-CCcE
Confidence 9999999988887777788999998 54422 11122111 347789999999976665 4689999999 6664
Q ss_pred eeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEE
Q 001336 974 LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALG 1053 (1097)
Q Consensus 974 ~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~ 1053 (1097)
. .+....+...+.+++++++|+++++...++.|.+||. +++. ..+.. + .+...+..+ ++ + ++.++++.
T Consensus 216 ~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~----~-~~~~~~~~i--~~-~-~g~l~v~~ 283 (299)
T 2z2n_A 216 T-EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPI----Q-IKSAEPHGI--CF-D-GETIWFAM 283 (299)
T ss_dssp E-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEEC----S-SSSCCEEEE--EE-C-SSCEEEEE
T ss_pred E-EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeC----C-CCCCccceE--Ee-c-CCCEEEEe
Confidence 3 3333345678999999999997777667899999998 4543 23321 1 223445555 56 5 67777765
Q ss_pred ecCCcEEEEecCCCC
Q 001336 1054 LTDGGVYIIEPLEAE 1068 (1097)
Q Consensus 1054 ~~Dg~v~~W~~~~~~ 1068 (1097)
+ .+.|..+++.+.+
T Consensus 284 ~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 284 E-CDKIGKLTLIKDN 297 (299)
T ss_dssp T-TTEEEEEEEC---
T ss_pred c-CCcEEEEEcCccc
Confidence 5 5677778776543
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=1.5e-12 Score=141.40 Aligned_cols=241 Identities=10% Similarity=0.013 Sum_probs=171.8
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
+.....+++|+|+|+.|++++..++.|.+||..++ . .. +..+...+.+++++|+|++++
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~-------------------~~~~~~~~~~l~~~~dg~l~v 84 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SP-------------------EMHPSHHQNGHCLNKQGHLIA 84 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EE-------------------EESSCSSEEEEEECTTCCEEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EE-------------------EECCCCCcceeeECCCCcEEE
Confidence 55678899999999978899999999999999887 2 21 234567899999999999888
Q ss_pred EEECCCEEEEEEccCCeeeeeeeeeec-ccCcEEEEEEecCCCcEEEEEE----e-------------CCCcEEEEECCC
Q 001336 398 VAYSKHIVHLYTYHGGDELRNHLEIEA-HVGSVNDLAFSYPNKQLSVVTC----G-------------EDRVIKVWDAVT 459 (1097)
Q Consensus 398 s~~~dg~i~iwd~~~~~~~~~~~~l~~-h~~~V~~l~~s~d~~~~~l~s~----s-------------~d~~i~iwd~~~ 459 (1097)
+...++.|.+||..+++.........+ ....+..++++|+|+ ++++. + ..+.|..++..
T Consensus 85 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 85 CSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp EETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred EecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 877788999999988764321111111 123467899999998 67763 2 13456666644
Q ss_pred CceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcC-CCCc---eeeecCCCCceEEEEEccCCCEEEEeeeC
Q 001336 460 GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD-NLGS---RVDYDAPGHSSTMMAYSADGARLFSCGTN 535 (1097)
Q Consensus 460 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 535 (1097)
++ +..+..+......++| +++++.+++.+.++.|.+|+++ .+.. ...+......+..++++++|++.++. +
T Consensus 162 g~-~~~~~~~~~~~~gi~~--s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~ 236 (296)
T 3e5z_A 162 GT-LSAPIRDRVKPNGLAF--LPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--G 236 (296)
T ss_dssp SC-EEEEECCCSSEEEEEE--CTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--T
T ss_pred CC-EEEeecCCCCCccEEE--CCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--C
Confidence 44 4445556677788988 5566777888888999999987 3322 12222334456789999999977765 2
Q ss_pred CCCCceEEEEeCCCCeeeEEecCCCCcceEEEEE-cCCCCEEEEEeCCCcEEEEECCCCce
Q 001336 536 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQF-DTTKNRFLAAGDEFMIKFWDMDNVNL 595 (1097)
Q Consensus 536 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~ 595 (1097)
..|.+||.. ++.+..+..+.. +.+++| +|+++.|++++.++ +..++..+.++
T Consensus 237 ----~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 237 ----DGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp ----TEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred ----CeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 259999986 777777776654 778888 58888999888764 55566666543
No 191
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.55 E-value=4e-11 Score=130.15 Aligned_cols=282 Identities=9% Similarity=-0.025 Sum_probs=193.7
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
+...+.+++++++|+ ++++...++.|.+||.. ++.... . ...+...+.+++++++|++++
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~---~---------------~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY---P---------------LPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE---E---------------CSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe---c---------------CCcccCceeeEEECCCCCEEE
Confidence 446899999999998 54555557899999988 543221 0 122456899999999999888
Q ss_pred EEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE-EeecCCcCeEEE
Q 001336 398 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY-IFEGHESPVYSI 476 (1097)
Q Consensus 398 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~ 476 (1097)
+...++.|..|+.. ++ +... .+......+..+++.+++. ++++...++.|.+||. +++... ....+...+..+
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i 146 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IKEY-TLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI 146 (299)
T ss_dssp EETTTTEEEEECTT-SC-EEEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EEEE-eCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence 87778999999986 33 2221 2323456789999999998 6777777889999998 665443 233345668888
Q ss_pred eecccCCccEEEEEcCCCeEEEEEcCCCCceee-ecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEE
Q 001336 477 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 555 (1097)
Q Consensus 477 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 555 (1097)
++ +++|.++++...++.|..||. ++..... .......+..++++++|+..++... ...|..||. +++....
T Consensus 147 ~~--~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~~~~ 218 (299)
T 2z2n_A 147 TL--GSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEITEF 218 (299)
T ss_dssp EE--CTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEE
T ss_pred EE--cCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcEEEE
Confidence 87 556677777777889999998 4443322 2223446889999999987665432 346999998 6654332
Q ss_pred ecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001336 556 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 556 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~ 635 (1097)
........+..++++++|+.+++...++.|..||. +++ +..+....+...+.++++ +++.+.++.. .+.+..++..
T Consensus 219 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 219 KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLI 294 (299)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC
T ss_pred ECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcC
Confidence 12212236889999999986666657889999998 454 334433333456789999 8887666554 5667777765
Q ss_pred CC
Q 001336 636 DG 637 (1097)
Q Consensus 636 ~~ 637 (1097)
++
T Consensus 295 ~~ 296 (299)
T 2z2n_A 295 KD 296 (299)
T ss_dssp --
T ss_pred cc
Confidence 54
No 192
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.55 E-value=9.9e-13 Score=145.63 Aligned_cols=241 Identities=10% Similarity=0.022 Sum_probs=172.7
Q ss_pred CCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001336 382 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 461 (1097)
Q Consensus 382 ~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~ 461 (1097)
..|.+++|++++..++..+.++.++.|. ++... .+..+...+.+++|+++|+ +++++..++.|.+||..+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~i~~~d~~~~~ 77 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWL---EISKKGLQLEGLNFDRQGQ--LFLLDVFEGNIFKINPETKE 77 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEE---EEESSCCCEEEEEECTTSC--EEEEETTTCEEEEECTTTCC
T ss_pred cccceeeecCCccceeEEeecccCcccc---cceeE---EEeccCccccCcEECCCCC--EEEEECCCCEEEEEeCCCCc
Confidence 3577889999988888878888889992 33233 3666777789999999998 77788889999999998888
Q ss_pred eeEEeecCCcCeEEEeecccCCccEEEEEcCC----CeEEEEEcCCCCceeeec--CCCCceEEEEEccCCCEEEEeeeC
Q 001336 462 KQYIFEGHESPVYSICPHHKENIQFIFSTATD----GKIKAWLYDNLGSRVDYD--APGHSSTMMAYSADGARLFSCGTN 535 (1097)
Q Consensus 462 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~ 535 (1097)
.......+...+.++++ +++|.++++...+ +.|.+||.++......+. .....+..++++|+|+.+++...+
T Consensus 78 ~~~~~~~~~~~~~~i~~--~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 155 (333)
T 2dg1_A 78 IKRPFVSHKANPAAIKI--HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRG 155 (333)
T ss_dssp EEEEEECSSSSEEEEEE--CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCC
T ss_pred EEEEeeCCCCCcceEEE--CCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccc
Confidence 76655456778999988 5566777777666 689999988766543332 234578999999999887765421
Q ss_pred --CCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEE-eCCCcEEEEECCC-CceEEEE------ecCCCC
Q 001336 536 --KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAA-GDEFMIKFWDMDN-VNLLASI------DADGGL 605 (1097)
Q Consensus 536 --~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~-~~~~~~~------~~~~~~ 605 (1097)
.+....|..+|..+++....... .. ....++|+|+++.++.+ +.++.|++|++.+ +..+..+ ...+ .
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~~~~-~~-~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~ 232 (333)
T 2dg1_A 156 YSTNPLGGVYYVSPDFRTVTPIIQN-IS-VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-H 232 (333)
T ss_dssp BTTBCCEEEEEECTTSCCEEEEEEE-ES-SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-S
T ss_pred cccCCCceEEEEeCCCCEEEEeecC-CC-cccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-C
Confidence 11234677788766554433222 12 56789999999866555 4678999999964 4433221 1111 1
Q ss_pred CCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001336 606 QASPCIRFNKEGILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 606 ~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~ 635 (1097)
..+..++++++|.++++...++.|.+|+..
T Consensus 233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 356789999999988888788899999873
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.54 E-value=4.4e-12 Score=139.49 Aligned_cols=278 Identities=12% Similarity=0.016 Sum_probs=189.9
Q ss_pred CCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeee
Q 001336 340 NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNH 419 (1097)
Q Consensus 340 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~ 419 (1097)
.++.|.+||.++++..... +. ... -.........+++. +++..++...++.|.+||..+++.+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i----~~--------~~n-~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~- 79 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEV----FY--------RAN-GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR- 79 (328)
T ss_dssp CCBEEEEEETTTTEEECSH----HH--------HHH-SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE-
T ss_pred CCceEEEEECCCCEEhhhh----Hh--------hhc-CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE-
Confidence 3889999999998764321 00 000 01122456777774 455556666689999999999987664
Q ss_pred eeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCC-----cCeEEEeecccCCccEEEEEc-CC
Q 001336 420 LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE-----SPVYSICPHHKENIQFIFSTA-TD 493 (1097)
Q Consensus 420 ~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~~-~d 493 (1097)
+. .......++++++++ ++++...++.|.+||..+++....+.... .....+++ . ++.++++.. .+
T Consensus 80 --i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~ 151 (328)
T 3dsm_A 80 --IT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ 151 (328)
T ss_dssp --EE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred --cC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence 33 345688999999985 56666589999999999999887776433 13445665 2 334444443 48
Q ss_pred CeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCC------CceEEEEeCCCCeeeEEecCCCCcceEEE
Q 001336 494 GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG------ESYLVEWNESEGAVKRTYHGLGKRSVGVV 567 (1097)
Q Consensus 494 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~------~~~i~~wd~~~~~~~~~~~~~~~~~v~~~ 567 (1097)
+.|.+||..+.+....+.. ......++++|+|++++++..+... ...|.++|..+++....+..........+
T Consensus 152 ~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp CEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred CEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 9999999998776655544 3345678999999977766432110 25799999999988877764333367899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcC-CCCEEEEE----ECCCcEEEEEcCCCceEEE
Q 001336 568 QFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGILLAVS----TNDNGIKILANADGIRLLR 642 (1097)
Q Consensus 568 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~----~~dg~i~iw~~~~~~~~~~ 642 (1097)
+++|+++.++++.. .|.+||..+++................++++| ++.++++. ..++.|.+|+.. + +.+.
T Consensus 231 a~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g-~~~~ 306 (328)
T 3dsm_A 231 QLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G-KLID 306 (328)
T ss_dssp EECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C-CEEE
T ss_pred EEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C-CEEE
Confidence 99999999988765 89999999887642111111124567899999 55555555 568899999987 6 5555
Q ss_pred Eec
Q 001336 643 TVE 645 (1097)
Q Consensus 643 ~~~ 645 (1097)
.+.
T Consensus 307 ~i~ 309 (328)
T 3dsm_A 307 EFY 309 (328)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.54 E-value=3.1e-11 Score=134.45 Aligned_cols=203 Identities=9% Similarity=-0.000 Sum_probs=140.8
Q ss_pred eEEEEccCCCEEEEEe---CCeEEEEEcCCCceeEE-eCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEE
Q 001336 810 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMTT-FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK 885 (1097)
Q Consensus 810 ~~l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~ 885 (1097)
..++|+|||++|++++ ++.|.++| .+++.+.+ +... . ++.+.|++.+.+++.+.||.+.+++. +++.+..
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 4688999999988876 36799999 99988877 6432 2 24555645567777888999999999 8876633
Q ss_pred ec-----ccccCe-EEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCC----CCCccCCeEEEEcCCCcEE
Q 001336 886 LK-----GHQKRI-TGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGR----TASALADTRVQFHLDQTHL 955 (1097)
Q Consensus 886 l~-----~h~~~V-~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~l~~s~dg~~l 955 (1097)
.. ....++ ....+++++..++..+.++.+.+.|+.+........+...... .........+.+++|++.+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 22 111222 3356777776655555788999999876432211122111110 0001234458899999988
Q ss_pred EEEe-----------CCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCC-EEEEEe-cCCeEEEEeCCCCceeeee
Q 001336 956 LAVH-----------ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQ-SIYVAF-EEGSVGVLTASTLRLRCRI 1021 (1097)
Q Consensus 956 ~~~~-----------d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~s-~Dg~v~vwd~~~~~~~~~~ 1021 (1097)
.++. .+.|.++|..+++.+..+.. .....+++|++||+ +|+++. .++.|.|||+.+++.+.++
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 8742 25799999999999998864 23688999999999 677777 4899999999999998774
No 195
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.53 E-value=1.9e-12 Score=140.50 Aligned_cols=237 Identities=11% Similarity=0.068 Sum_probs=167.7
Q ss_pred cCCCCCCeEEEEEccCCC-EEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001336 377 SSDYTASVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 455 (1097)
Q Consensus 377 ~~~h~~~V~~v~~spd~~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 455 (1097)
+..+.....+++|+|+|+ +++++..++.|..|+..++ .. .+..+...+.+++|+++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 344566788999999998 7788888999999999887 33 2555778899999999998 67777777899999
Q ss_pred ECCCCceeEEeecC----CcCeEEEeecccCCccEEEEE----c-------------CCCeEEEEEcCCCCceeeecCCC
Q 001336 456 DAVTGTKQYIFEGH----ESPVYSICPHHKENIQFIFST----A-------------TDGKIKAWLYDNLGSRVDYDAPG 514 (1097)
Q Consensus 456 d~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s~----~-------------~dg~i~iwd~~~~~~~~~~~~~~ 514 (1097)
|..+++........ ...+.++++ +++|.++++. + ..+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~--d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCL--APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEE--CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEE--CCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 99888765433221 224566777 5677888873 2 12355555443 3333444445
Q ss_pred CceEEEEEccCCCEEEEeeeCCCCCceEEEEeCC-CCee---eEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001336 515 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNES-EGAV---KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDM 590 (1097)
Q Consensus 515 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 590 (1097)
.....++|+|+++.+++.. ....|.+|++. ++.. ...+ ......+..++++++|+.+++. ++.|.+|+.
T Consensus 172 ~~~~gi~~s~dg~~lv~~~----~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDT----GDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp SSEEEEEECTTSCEEEEET----TTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred CCCccEEECCCCCEEEEeC----CCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 5678999999999984443 24579999986 4554 3444 2223356779999999876666 789999998
Q ss_pred CCCceEEEEecCCCCCCcceEEE-cCCCCEEEEEECCCcEEEEEcCC
Q 001336 591 DNVNLLASIDADGGLQASPCIRF-NKEGILLAVSTNDNGIKILANAD 636 (1097)
Q Consensus 591 ~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~s~~~dg~i~iw~~~~ 636 (1097)
+ ++.+..+..+ .. +.+++| .|+++.|++++.++ +.-++..+
T Consensus 245 ~-g~~~~~~~~~--~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 245 D-GDELGRVLTP--QT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp T-SCEEEEEECS--SC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred C-CCEEEEEECC--CC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 7 7788877755 33 789999 58999999888764 33344443
No 196
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=3e-13 Score=165.75 Aligned_cols=243 Identities=11% Similarity=0.038 Sum_probs=163.6
Q ss_pred CCCCeeEEEEccCCCEEEEEe--C----CeEEEEEcCCCcee-EEeCCCCCCeEEEEEeCCCCCEEEEEECCCc------
Q 001336 805 PEDAVPCFALSKNDSYVMSAS--G----GKISLFNMMTFKTM-TTFMPPPPAATFLAFHPQDNNIIAIGMEDSS------ 871 (1097)
Q Consensus 805 h~~~v~~l~~s~dg~~la~~s--d----g~i~iwd~~~~~~~-~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~------ 871 (1097)
|...+..++|||||++||.+. + .+|++||+.+++.+ .... .......++|+| |++.|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence 555789999999999999553 2 47999999998865 2111 111126899999 8999999988776
Q ss_pred -------EEEEEcccce----EEEEecccccCeEEEEEecCCCEEEEEeCCC----cEEEEEcCCCcccceeeEeecCCC
Q 001336 872 -------IQIYNVRVDE----VKTKLKGHQKRITGLAFSNTLNVLVSSGADS----QLCVWSTDGWEKQASKFLTIPNGR 936 (1097)
Q Consensus 872 -------v~vwd~~~~~----~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg----~i~iwd~~~~~~~~~~~~~~~~~~ 936 (1097)
|++|++.+++ ++.....|...+..+.|||||++|+.++.++ .|++|+..+++ ...+....
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~-- 271 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD---FRLLVKGV-- 271 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS---CEEEEECS--
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc---eEEeecCC--
Confidence 9999998765 4555556767889999999999998877666 67777655443 12222211
Q ss_pred CCCccCCeEEEEcCCCcEEEEEe----CCeEEEEeCCCcce--eeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEE
Q 001336 937 TASALADTRVQFHLDQTHLLAVH----ETQIAIYEAPKLEC--LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVL 1010 (1097)
Q Consensus 937 ~~~~~~v~~l~~s~dg~~l~~~~----d~~v~vwd~~~~~~--~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vw 1010 (1097)
..+....+ ++|.+++.+. ++.|.+||+++++. ...+....+...+..++|+ ++.++++...|+..+||
T Consensus 272 ----~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 272 ----GAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp ----SCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred ----CceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 23455555 6666333343 47899999987753 2333322225568889998 77889999999998888
Q ss_pred eCC-CCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEE-EEe---cCCcEEEEecCCCCc
Q 001336 1011 TAS-TLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFA-LGL---TDGGVYIIEPLEAEG 1069 (1097)
Q Consensus 1011 d~~-~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~-s~~---~Dg~v~~W~~~~~~~ 1069 (1097)
.+. +++....+... +.+.|..+ +++| ++..++ +.+ ..++|++||+..++.
T Consensus 346 ~~~~~g~~~~~l~~~------~~~~v~~~--~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 346 VATLKGKPVRTVQLP------GVGAASNL--MGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEETTCCEEEECCCS------SSSEECCC--BSCT-TCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEeCCCCeeEEecCC------CCeEEEEe--ecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 765 35444443311 13444444 6778 455555 333 357899999987654
No 197
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.52 E-value=2.8e-12 Score=141.03 Aligned_cols=242 Identities=14% Similarity=0.130 Sum_probs=171.0
Q ss_pred CCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEE
Q 001336 807 DAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK 885 (1097)
Q Consensus 807 ~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~ 885 (1097)
.....+++. ++++.++.. ++.|.+||..+++.+.++. .......+++++ +++++++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 445677774 344444554 7999999999999988885 456789999988 775555544899999999999998877
Q ss_pred ecccc-----cCeEEEEEecCCCEEEEEe-CCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEe
Q 001336 886 LKGHQ-----KRITGLAFSNTLNVLVSSG-ADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVH 959 (1097)
Q Consensus 886 l~~h~-----~~V~~l~~s~dg~~l~s~~-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~ 959 (1097)
+.... .....+++ .++..+++.. .++.|.++|..+++... .+.. + .....++++++|++++++.
T Consensus 121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~--~i~~--g-----~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVD--ELTI--G-----IQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEE--EEEC--S-----SCBCCCEECTTSEEEEEBC
T ss_pred EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEE--EEEc--C-----CCccceEEcCCCCEEEEEC
Confidence 65433 13556777 3444444433 48899999999876332 1221 2 2246789999999777742
Q ss_pred -C----------CeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCC
Q 001336 960 -E----------TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLP 1028 (1097)
Q Consensus 960 -d----------~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~ 1028 (1097)
+ +.|.++|..+++....+.... ......++|+||+++|.++.. .|.+||..+++..... +++
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~----~~~ 263 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP----FLE 263 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC----SBC
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee----eec
Confidence 2 689999999998877765321 246889999999999887765 8999999988764211 111
Q ss_pred CCCCCceeeEEEEEcCCCCCEEEEE----ecCCcEEEEecCCCCcccC
Q 001336 1029 TNPSLRVYPLVIAGNPTDPNQFALG----LTDGGVYIIEPLEAEGRWG 1072 (1097)
Q Consensus 1029 ~~h~~~v~~l~i~~~p~~~~~l~s~----~~Dg~v~~W~~~~~~~~~~ 1072 (1097)
. +..... .++++|+++.++++. ..++.|.+||.. ++..|.
T Consensus 264 ~-~~~~p~--gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~ 307 (328)
T 3dsm_A 264 F-RDTKYY--GLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDE 307 (328)
T ss_dssp C-CSSCEE--EEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEE
T ss_pred C-CCCceE--EEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEE
Confidence 1 112333 458889778888888 788999999997 554443
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.51 E-value=8.3e-12 Score=132.87 Aligned_cols=243 Identities=12% Similarity=0.069 Sum_probs=178.4
Q ss_pred EEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCC-CCeEEEEEccCCCEEEEEECCCEEEEEEccC
Q 001336 334 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT-ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHG 412 (1097)
Q Consensus 334 lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spd~~~las~~~dg~i~iwd~~~ 412 (1097)
++++++.++.|.+||.++|+.+.. +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 678999999999999999987654 22233 4688999999999999 45778999999 7
Q ss_pred Ceeeeeeeeeecc-cCcEEEEEEecCCCcEEEEEEeC-CCcEEEEECCCCceeEEeec------CCcCeEEEeecccCCc
Q 001336 413 GDELRNHLEIEAH-VGSVNDLAFSYPNKQLSVVTCGE-DRVIKVWDAVTGTKQYIFEG------HESPVYSICPHHKENI 484 (1097)
Q Consensus 413 ~~~~~~~~~l~~h-~~~V~~l~~s~d~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~~ 484 (1097)
|+.+.. +..+ ...+.++.+.++|+ ++++.+. ++.|..+|. +|+.+.++.. +......+++ .++|
T Consensus 65 G~~~W~---~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G 136 (276)
T 3no2_A 65 GRELWN---IAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG 136 (276)
T ss_dssp SCEEEE---EECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred CCEEEE---EcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence 776654 3333 35688999999999 7888776 778888884 8888776642 1122333333 6678
Q ss_pred cEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCC---
Q 001336 485 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK--- 561 (1097)
Q Consensus 485 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--- 561 (1097)
+++++...++.|..||.+ ++....+... ....++.+.++|+.++++.. ...|..+|..+|+.+.++.....
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~ 210 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV 210 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence 999999999999999988 8887777654 34567788899999988753 33699999999999988864321
Q ss_pred --cceEEEEEcCCCCEEEEEeCC--------CcEEEEEC-CCCceEEEEecCCCCCCcceEE
Q 001336 562 --RSVGVVQFDTTKNRFLAAGDE--------FMIKFWDM-DNVNLLASIDADGGLQASPCIR 612 (1097)
Q Consensus 562 --~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~ 612 (1097)
..+..+...++|+.+++.... +..+++.+ .+|+.+-.+........+..++
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 236778888999888887421 23345555 4678887776655555565553
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.50 E-value=2.4e-12 Score=158.93 Aligned_cols=247 Identities=11% Similarity=0.062 Sum_probs=164.1
Q ss_pred CCCCCCeEEEEEccCCCEEEEEECC-----CEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCc-
Q 001336 378 SDYTASVNRVMWSPDGTLFGVAYSK-----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV- 451 (1097)
Q Consensus 378 ~~h~~~V~~v~~spd~~~las~~~d-----g~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~- 451 (1097)
.+|...+..++|||||++||.+..+ ..|++||+.+++.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 159 ~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~ 231 (741)
T 1yr2_A 159 KDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPK 231 (741)
T ss_dssp ----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC-
T ss_pred cCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCcc
Confidence 3455578999999999999988654 4699999999986542 112222357899999 8 5666665543
Q ss_pred -------------EEEEECCCCce--eEEee--cCCcCeEEEeecccCCccEEEEEcCC-----CeEEEEEcCCC--Cce
Q 001336 452 -------------IKVWDAVTGTK--QYIFE--GHESPVYSICPHHKENIQFIFSTATD-----GKIKAWLYDNL--GSR 507 (1097)
Q Consensus 452 -------------i~iwd~~~~~~--~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~--~~~ 507 (1097)
|++|++.++.. ...+. .+...+..+.| ++||++|+..+.+ ..|.+||++++ ...
T Consensus 232 ~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 309 (741)
T 1yr2_A 232 EGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASV--SSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPV 309 (741)
T ss_dssp -------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECTTCSCCEEEEEEEETTEECCC
T ss_pred cccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEE--CCCCCEEEEEEEccCCCcceEEEEECCCCCCccc
Confidence 89999987752 22333 33345777777 6677888777654 38999999876 313
Q ss_pred eeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC--eeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcE
Q 001336 508 VDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG--AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMI 585 (1097)
Q Consensus 508 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 585 (1097)
..+..+...+... ++|+|+.|+..+..+.....|.+||+.++ .....+..+.. .+..+.+. ++..+++...|+..
T Consensus 310 ~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~l~~~~~~-~~~lv~~~~~dg~~ 386 (741)
T 1yr2_A 310 TALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD-NLESVGIA-GNRLFASYIHDAKS 386 (741)
T ss_dssp EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS-EEEEEEEE-BTEEEEEEEETTEE
T ss_pred EEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC-eEEEEEEE-CCEEEEEEEECCEE
Confidence 3333333344444 35899999888765444678999999874 34444444433 56677777 45667777788887
Q ss_pred EEEECC-CCceEEEEecCCCCCCcceEEEcCCCCEEEEE-E---CCCcEEEEEcCCC
Q 001336 586 KFWDMD-NVNLLASIDADGGLQASPCIRFNKEGILLAVS-T---NDNGIKILANADG 637 (1097)
Q Consensus 586 ~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~---~dg~i~iw~~~~~ 637 (1097)
++|.++ +++....+..+. ...+..++++|++..++.. + ..++|++||+.++
T Consensus 387 ~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 387 QVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 777554 456666665321 4467889999988766533 2 3478999999887
No 200
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.50 E-value=1.4e-11 Score=134.51 Aligned_cols=248 Identities=9% Similarity=0.046 Sum_probs=168.3
Q ss_pred EEEccCCceeeeec----------cCcEEEEeccCCCCCCccCccccccCCcccCCCCCcccccc-CCCC---CCCCCee
Q 001336 745 LIYTNSGLAILALA----------SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTND-ISDT---NPEDAVP 810 (1097)
Q Consensus 745 l~~spdg~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~---~h~~~v~ 810 (1097)
++++|||++++++. .++.|.+||.. +.+..... +... .......
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~----------------------t~~v~~~I~v~~g~r~~~g~~P~ 140 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV----------------------TLLPTADIELPDAPRFLVGTYPW 140 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT----------------------TCCEEEEEEETTCCCCCBSCCGG
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECC----------------------CCeEEEEEECCCccccccCCCCc
Confidence 89999999988876 25678887654 33322211 1100 0122456
Q ss_pred EEEEccCCCEEEEEe---CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEccc-ceEEEEe
Q 001336 811 CFALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-DEVKTKL 886 (1097)
Q Consensus 811 ~l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~-~~~~~~l 886 (1097)
.++|+|||+++.++. ++.|.++|+.+++.+.++.... . ...+.. +.+.+++.+.||.+.+.++.+ ++.....
T Consensus 141 ~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~~~ 216 (386)
T 3sjl_D 141 MTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEITH 216 (386)
T ss_dssp GEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEEEE
T ss_pred eEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEEEee
Confidence 799999999988875 4789999999999999885322 1 233333 566777888899999999876 5543222
Q ss_pred cccc----cCeE-EEEEe-cCCCEEEEEeCCCcEEEEEcCCCcccceeeEeec------CCCCCCccCCeEEEEcCCCcE
Q 001336 887 KGHQ----KRIT-GLAFS-NTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIP------NGRTASALADTRVQFHLDQTH 954 (1097)
Q Consensus 887 ~~h~----~~V~-~l~~s-~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~~s~dg~~ 954 (1097)
..+. .++. ...|. ++|++++ .+.+|.|.+.|+.++.......+.+. .+-.+ .....++++++++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~~~ 293 (386)
T 3sjl_D 217 TEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRALDR 293 (386)
T ss_dssp CCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTTTE
T ss_pred cceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCCCe
Confidence 1121 2222 24664 6775555 56689999999987542221122110 11111 34566888999999
Q ss_pred EEEEe-----------CCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCC-EEEEEe-cCCeEEEEeCCCCceeeee
Q 001336 955 LLAVH-----------ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQ-SIYVAF-EEGSVGVLTASTLRLRCRI 1021 (1097)
Q Consensus 955 l~~~~-----------d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~s-~Dg~v~vwd~~~~~~~~~~ 1021 (1097)
|++.. .+.|.++|+.+++.+..+... ..+.++++++|++ +|+++. .++.|.|+|..+++.+.++
T Consensus 294 lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i 370 (386)
T 3sjl_D 294 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV 370 (386)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEe
Confidence 98853 257999999999999998763 4788999999997 666654 4899999999999999888
Q ss_pred CCC
Q 001336 1022 NPT 1024 (1097)
Q Consensus 1022 ~~~ 1024 (1097)
...
T Consensus 371 ~~~ 373 (386)
T 3sjl_D 371 NQL 373 (386)
T ss_dssp CCC
T ss_pred cCC
Confidence 733
No 201
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.49 E-value=5.5e-12 Score=134.77 Aligned_cols=240 Identities=10% Similarity=0.013 Sum_probs=165.8
Q ss_pred CeeEEEEccCCCEEE-EEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEE
Q 001336 808 AVPCFALSKNDSYVM-SAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK 885 (1097)
Q Consensus 808 ~v~~l~~s~dg~~la-~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~ 885 (1097)
...+++++++|++++ +.. ++.|.+|+..+.........+...+.++++++ +++++++.. ++.|.+||..+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678999999999777 434 78899999866543322223335688999999 777666555 88999999876543322
Q ss_pred ecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEE
Q 001336 886 LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIA 964 (1097)
Q Consensus 886 l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~ 964 (1097)
.......+.+++++++|+++++...++.|.+|+..+.... . ..... ...+..++++++|+++++. .++.|.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~----~-~~~~~---~~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT----V-LPFTG---LNDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE----E-CCCCS---CCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE----e-ecccc---CCCceeEEEeCCCCEEEEECCCCEEE
Confidence 2223356899999999998888777889999976543211 1 11111 1346889999999966664 468999
Q ss_pred EEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcC
Q 001336 965 IYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNP 1044 (1097)
Q Consensus 965 vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p 1044 (1097)
+||..+........ .+...+.+++++++|.++++...++.|.+|+........ .. ..+-..+. .++++|
T Consensus 175 ~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~------~~~~~~p~--~i~~~~ 243 (270)
T 1rwi_B 175 KLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP------FTGLNTPL--AVAVDS 243 (270)
T ss_dssp EECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC------CCSCSCEE--EEEECT
T ss_pred EEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec------cCCCCCce--eEEECC
Confidence 99998765443222 233678999999999888877778999999987654322 11 11223344 447778
Q ss_pred CCCCEEEEEecCCcEEEEecCCCCc
Q 001336 1045 TDPNQFALGLTDGGVYIIEPLEAEG 1069 (1097)
Q Consensus 1045 ~~~~~l~s~~~Dg~v~~W~~~~~~~ 1069 (1097)
++.++++...+++|+++++.+.+.
T Consensus 244 -~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 244 -DRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp -TCCEEEEEGGGTEEEEECCCGGGS
T ss_pred -CCCEEEEECCCCEEEEEcCCCccc
Confidence 578999999999999999987764
No 202
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.48 E-value=6.7e-12 Score=133.61 Aligned_cols=250 Identities=10% Similarity=0.032 Sum_probs=178.5
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCC-CCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccc-cC
Q 001336 816 KNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQ-KR 892 (1097)
Q Consensus 816 ~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~-~~ 892 (1097)
..+++|++++ ++.|.+||.++++.+.++..+. ..+.+++++| ++++++ +.++.|+.||. +|+.+.++..+. ..
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 3457788887 8999999999999999998766 5789999999 888888 45788999998 899998888753 46
Q ss_pred eEEEEEecCCCEEEEEeC-CCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEEEEeCCC
Q 001336 893 ITGLAFSNTLNVLVSSGA-DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPK 970 (1097)
Q Consensus 893 V~~l~~s~dg~~l~s~~~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~vwd~~~ 970 (1097)
+.++.+.+||+++++.+. ++.|..+|.+ ++.... +....+..........+++.++|+++++. .++.|.+||.+
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~--~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNMK-GEVLSK--TEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEE--EEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEE--EeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence 889999999999999887 7777777753 332211 12111111111235567889999999885 68999999998
Q ss_pred cceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEE
Q 001336 971 LECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQF 1050 (1097)
Q Consensus 971 ~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l 1050 (1097)
|+.+..+... ..+.++.+.++|.++++++.++.|..+|..+|+.+.++.... ++...-..+.+ +...+ ++.++
T Consensus 155 G~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~-~~~~~l~~~~~--~~~~~-~G~i~ 227 (276)
T 3no2_A 155 GQLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND-IEGVQLFFVAQ--LFPLQ-NGGLY 227 (276)
T ss_dssp SCEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG-SBSCCCSEEEE--EEECT-TSCEE
T ss_pred CCEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC-CCCcccccccc--ceEcC-CCCEE
Confidence 9988887642 355678889999999999888899999999999988876221 11111112333 34456 67777
Q ss_pred EEEecC--------CcEEEEec-CCCCcccCCCCCCCCC
Q 001336 1051 ALGLTD--------GGVYIIEP-LEAEGRWGTSPPNENG 1080 (1097)
Q Consensus 1051 ~s~~~D--------g~v~~W~~-~~~~~~~~~~~~~~~~ 1080 (1097)
++.+.. +..+++++ .+++.-|+....+.-+
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~ 266 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFG 266 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSC
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecCccccc
Confidence 776411 23345555 4666667766555543
No 203
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.48 E-value=5.5e-12 Score=134.81 Aligned_cols=241 Identities=9% Similarity=-0.002 Sum_probs=166.7
Q ss_pred CeeEEEEccCCCeEEE-EEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEE
Q 001336 321 AVKSMDFHPVQQILLV-VGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 399 (1097)
Q Consensus 321 ~V~~v~fspdg~~lla-~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 399 (1097)
...+++++|+|+ |++ +...++.|.+||..++..... ...+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 788999999998 556 546789999999765543210 12233567889999999966665
Q ss_pred ECCCEEEEEEccCCeeeeeeeeee-cccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEee
Q 001336 400 YSKHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICP 478 (1097)
Q Consensus 400 ~~dg~i~iwd~~~~~~~~~~~~l~-~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 478 (1097)
. ++.|.+||..++.... +. .....+..++++++|. ++++...++.|.+|+..+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 8899999987654221 22 2335689999999998 6777777889999986555443322233345677877
Q ss_pred cccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecC
Q 001336 479 HHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG 558 (1097)
Q Consensus 479 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 558 (1097)
+++|.++++...++.|.+||.+..............+.+++++++|..+++... ...|.+||........ ...
T Consensus 158 --~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~-~~~ 230 (270)
T 1rwi_B 158 --DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTV-LPF 230 (270)
T ss_dssp --CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEE-CCC
T ss_pred --eCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCccee-ecc
Confidence 456677777777899999998765543332233357889999999976666532 3469999987654433 222
Q ss_pred CCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001336 559 LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL 595 (1097)
Q Consensus 559 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 595 (1097)
.....+..++++++|+.+++...++.|+++++...+.
T Consensus 231 ~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 231 TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 2223688999999999888888999999999876543
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.47 E-value=2.6e-10 Score=123.74 Aligned_cols=278 Identities=10% Similarity=-0.011 Sum_probs=191.1
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
....+.+++++++|+ +.++...++.|.+||.. ++... +. +..+...+.+++++++|++.+
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~---~~---------------~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKE---FE---------------VPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE---EE---------------CSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEE---EE---------------CCCCCCcceeEEECCCCCEEE
Confidence 356889999999998 55666678999999988 54322 10 223346799999999999888
Q ss_pred EEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE-EeecCCcCeEEE
Q 001336 398 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY-IFEGHESPVYSI 476 (1097)
Q Consensus 398 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~ 476 (1097)
+...++.|..||.. ++. ... .+......+.++++.++|. ++++...++.|..+|.. ++... .+......+.++
T Consensus 78 ~~~~~~~v~~~d~~-g~~-~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i 151 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGF-TEY-PLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI 151 (300)
T ss_dssp EETTTTEEEEECTT-SCE-EEE-ECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred EecCCCeEEEECCC-CCe-EEe-cCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence 77778899999987 543 221 2333446789999999998 67777668899999987 65543 233345667888
Q ss_pred eecccCCccEEEEEcCCCeEEEEEcCCCCcee-eecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEE
Q 001336 477 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRV-DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 555 (1097)
Q Consensus 477 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 555 (1097)
++ +++|.+.++...++.|..|+. ++.... ........+..++++++|+..++... ...|..||. +++....
T Consensus 152 ~~--d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 152 TL--GSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISEY 223 (300)
T ss_dssp EE--CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEE
T ss_pred EE--CCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEEE
Confidence 87 556677777777889999987 333322 12223346889999999987666432 346999998 4544333
Q ss_pred -ecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001336 556 -YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 634 (1097)
Q Consensus 556 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~ 634 (1097)
..... ..+..++++++|+.+++...++.|..|+. +++.. .+........+.+++++++|.+.++.. . .|..++.
T Consensus 224 ~~~~~~-~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 224 DIPTPN-ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ECSSTT-CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ECCCCC-CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 22222 36788999999986666667789999998 45443 333222345678999999988665544 4 6666654
No 205
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.47 E-value=1.6e-10 Score=128.57 Aligned_cols=278 Identities=9% Similarity=-0.040 Sum_probs=182.4
Q ss_pred EccCCCeEEEEEe-CCC---eEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEE--
Q 001336 327 FHPVQQILLVVGT-NMG---DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY-- 400 (1097)
Q Consensus 327 fspdg~~lla~gs-~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~-- 400 (1097)
..|++++++++-. ... +|.+||..+++.+.. +.....+ .++|||||++|+++.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~~ 86 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALASTS 86 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEecc
Confidence 3466766555433 222 899999999886543 1111223 899999999999986
Q ss_pred --------CCCEEEEEEccCCeeeeeeeeee--cc---cCcEEEEEEecCCCcEEEEEEeC--CCcEEEEECCCCceeEE
Q 001336 401 --------SKHIVHLYTYHGGDELRNHLEIE--AH---VGSVNDLAFSYPNKQLSVVTCGE--DRVIKVWDAVTGTKQYI 465 (1097)
Q Consensus 401 --------~dg~i~iwd~~~~~~~~~~~~l~--~h---~~~V~~l~~s~d~~~~~l~s~s~--d~~i~iwd~~~~~~~~~ 465 (1097)
.++.|.+||..+.+.+.... +. .+ ......++|+|||+ +|+.+.. ++.|.++| .+++.+.+
T Consensus 87 ~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 87 FSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred ccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEE-CCCCEEeE
Confidence 36789999999877655332 21 00 12345899999999 5666553 57899999 99998877
Q ss_pred -eecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeec-----CCCCc-eEEEEEccCCCEEEEeeeCCCC
Q 001336 466 -FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-----APGHS-STMMAYSADGARLFSCGTNKEG 538 (1097)
Q Consensus 466 -~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~-v~~~~~s~~~~~l~~~~~~~~~ 538 (1097)
+... .. +.+.+... ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+.
T Consensus 163 ~i~~~-~~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---- 232 (373)
T 2mad_H 163 LLSSP-TC---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY---- 232 (373)
T ss_pred EcCCC-ce---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC----
Confidence 6432 21 33333333 45667778999999999 655442221 11112 123456666665554443
Q ss_pred CceEEEEeCCCC--eeeEEecCC---------CCcceEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceEE
Q 001336 539 ESYLVEWNESEG--AVKRTYHGL---------GKRSVGVVQFDTTKNRFLAAGD----------EFMIKFWDMDNVNLLA 597 (1097)
Q Consensus 539 ~~~i~~wd~~~~--~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~ 597 (1097)
...+.+.|+..+ +.+..+... .......+.++++++.++.+.. ++.|.++|..+++.+.
T Consensus 233 ~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~ 312 (373)
T 2mad_H 233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS 312 (373)
T ss_pred CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE
Confidence 236888888654 222332211 0112344789999988888653 3579999999999999
Q ss_pred EEecCCCCCCcceEEEcCCCC-EEEEEE-CCCcEEEEEcCCCceEEEE
Q 001336 598 SIDADGGLQASPCIRFNKEGI-LLAVST-NDNGIKILANADGIRLLRT 643 (1097)
Q Consensus 598 ~~~~~~~~~~v~~v~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~~~~~ 643 (1097)
.+...+ ....++|+|||+ +++++. .++.|.+||..++ +..+.
T Consensus 313 ~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~-~vv~~ 356 (373)
T 2mad_H 313 QISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG-DQDQS 356 (373)
T ss_pred EEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC-CEEee
Confidence 986532 468999999999 777776 5899999999988 44444
No 206
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.46 E-value=2.8e-11 Score=132.21 Aligned_cols=281 Identities=11% Similarity=0.036 Sum_probs=185.1
Q ss_pred CCceEEEEeecCCCeeEEEEccCCCeEEEEEe---------CCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccC
Q 001336 308 LPKTVVMTLNQGSAVKSMDFHPVQQILLVVGT---------NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSS 378 (1097)
Q Consensus 308 ~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1097)
...+.+.++.-..... +++||||++++++.+ .++.|.+||..+++.+....+ ... .. .
T Consensus 67 ~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v-----~~g-~r------~ 133 (386)
T 3sjl_D 67 EAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIEL-----PDA-PR------F 133 (386)
T ss_dssp TTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE-----TTC-CC------C
T ss_pred CCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEEC-----CCc-cc------c
Confidence 3467777777444444 999999998877653 467899999999887654211 000 00 0
Q ss_pred CCCCCeEEEEEccCCCEEEEEEC--CCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001336 379 DYTASVNRVMWSPDGTLFGVAYS--KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 456 (1097)
Q Consensus 379 ~h~~~V~~v~~spd~~~las~~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 456 (1097)
.....-..++|+|||++|.++.. ++.|.++|+.+++.+..+. +.+ . ...+ |.+.. .+++.+.||.+.+.+
T Consensus 134 ~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~-v~g----~-~~~~-P~g~~-~~~~~~~DG~~~~v~ 205 (386)
T 3sjl_D 134 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD-VPD----C-YHIF-PTAPD-TFFMHCRDGSLAKVA 205 (386)
T ss_dssp CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CCS----E-EEEE-EEETT-EEEEEETTSCEEEEE
T ss_pred ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEE-CCC----c-ceee-cCCCc-eeEEECCCCCEEEEE
Confidence 01124557999999999998874 6899999999998766431 222 1 1223 44433 577888899999999
Q ss_pred CCC-CceeEEeecCC----cCeE-EEeecccCCccEEEEEcCCCeEEEEEcCCCCceee--ec--C--------CCCceE
Q 001336 457 AVT-GTKQYIFEGHE----SPVY-SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD--YD--A--------PGHSST 518 (1097)
Q Consensus 457 ~~~-~~~~~~~~~h~----~~v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~--~--------~~~~v~ 518 (1097)
+.+ ++...+...+. .++. ...|. .++|++++ .+.+|.|.+.|+........ +. . ......
T Consensus 206 ~~~~g~v~~~~~~~~~~~~~~~~~~~~~~-~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q 283 (386)
T 3sjl_D 206 FGTEGTPEITHTEVFHPEDEFLINHPAYS-QKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ 283 (386)
T ss_dssp CCSSSCCEEEECCCCSCTTSCBCSCCEEE-TTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSS
T ss_pred CCCCCeEEEeecceeccccccccccceeE-cCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcc
Confidence 876 66533221111 1121 11222 24555444 55689999999876543221 11 0 012334
Q ss_pred EEEEccCCCEEEEeeeC------CCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCC-EEEEEe-CCCcEEEEEC
Q 001336 519 MMAYSADGARLFSCGTN------KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAG-DEFMIKFWDM 590 (1097)
Q Consensus 519 ~~~~s~~~~~l~~~~~~------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~ 590 (1097)
.++++++++.++..... ++....|.++|+.+++.++.+.... .+..+.++++++ +|+++. .++.|.++|.
T Consensus 284 ~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 284 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred eeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 57789999988886431 1123579999999999999887643 677899999996 777755 6899999999
Q ss_pred CCCceEEEEecCCCCCCcceEEEcCC
Q 001336 591 DNVNLLASIDADGGLQASPCIRFNKE 616 (1097)
Q Consensus 591 ~~~~~~~~~~~~~~~~~v~~v~~s~~ 616 (1097)
.+++.+.++...++ -+.+.+++|
T Consensus 362 ~t~k~~~~i~~~~~---p~~l~~s~d 384 (386)
T 3sjl_D 362 ESGEELRSVNQLGH---GPQVITTAD 384 (386)
T ss_dssp TTCCEEEEECCCCS---SCCEEEECC
T ss_pred CCCcEEEEecCCCC---CceeEECCc
Confidence 99999999976544 356666665
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.44 E-value=4e-11 Score=133.68 Aligned_cols=205 Identities=11% Similarity=0.063 Sum_probs=143.7
Q ss_pred eEEEEccCCCEEEEEe---CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEE-
Q 001336 810 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK- 885 (1097)
Q Consensus 810 ~~l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~- 885 (1097)
..++|+|||+++.++. ++.|.+.|+.+++.+.++.... . ....|++...+++.+.||.+.+.+..+++....
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 4578999999888876 3689999999999988876422 1 333442446667777888888888866654422
Q ss_pred ---ecccccCe-EEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCC----CCccCCeEEEEcCCCcEEEE
Q 001336 886 ---LKGHQKRI-TGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT----ASALADTRVQFHLDQTHLLA 957 (1097)
Q Consensus 886 ---l~~h~~~V-~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~l~~s~dg~~l~~ 957 (1097)
+.....++ ..+.|++++..++.....+.|.+.|+..........+.+..... ........+++++|++.+++
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 22112222 23568999988888788899999998764422111111110000 00022334799999998887
Q ss_pred Ee-----------CCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCC-EEEEEe-cCCeEEEEeCCCCceeeee
Q 001336 958 VH-----------ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQ-SIYVAF-EEGSVGVLTASTLRLRCRI 1021 (1097)
Q Consensus 958 ~~-----------d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~s-~Dg~v~vwd~~~~~~~~~~ 1021 (1097)
+. ++.|.++|..+++.+..+... ....+++|++||+ +|+++. .++.|.|+|+.+++.+.++
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 52 357999999999999998753 3588999999999 888888 4899999999999999886
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.42 E-value=1.1e-09 Score=118.85 Aligned_cols=278 Identities=8% Similarity=0.030 Sum_probs=189.1
Q ss_pred CccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccC
Q 001336 738 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 817 (1097)
Q Consensus 738 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 817 (1097)
....+.++++.++|+..++...++.|.+|+.. ++.....+.. ....+.+++++++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-----------------------~~~~~~~~~~--~~~~~~~i~~~~~ 72 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-----------------------GRIKEFEVPT--PDAKVMCLIVSSL 72 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------SCEEEEECSS--TTCCEEEEEECTT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-----------------------CceEEEECCC--CCCcceeEEECCC
Confidence 45678899999999988877778888888643 2221111221 3467889999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCceeEE-eCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEE-EecccccCeE
Q 001336 818 DSYVMSAS-GGKISLFNMMTFKTMTT-FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKT-KLKGHQKRIT 894 (1097)
Q Consensus 818 g~~la~~s-dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~-~l~~h~~~V~ 894 (1097)
|++.++.. ++.|..||.. ++.... +......+..+++.+ +++++++...++.|..|+.. ++... .+......+.
T Consensus 73 g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~ 149 (300)
T 2qc5_A 73 GDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA 149 (300)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred CCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence 99887776 6889999987 554322 222346789999998 78887777668899999987 65442 2333456789
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEEEEeCCCcce
Q 001336 895 GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLEC 973 (1097)
Q Consensus 895 ~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~vwd~~~~~~ 973 (1097)
++++.++|+++++...++.|..++. .++.. .+...... ..+..++++++|.+.++. ..+.|.+|+. +++.
T Consensus 150 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~---~~~~~~~~----~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~ 220 (300)
T 2qc5_A 150 FITLGSDNALWFTENQNNSIGRITN-TGKLE---EYPLPTNA----AAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI 220 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEE---EEECSSTT----CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred eEEECCCCCEEEEecCCCeEEEECC-CCcEE---EeeCCCCC----CCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE
Confidence 9999999997777766788999998 43321 12221111 357889999999877765 4578999998 4544
Q ss_pred eeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEE
Q 001336 974 LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALG 1053 (1097)
Q Consensus 974 ~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~ 1053 (1097)
.. +....+...+.+++++++|++.++...++.|..|+. +++.. .+.. + .....+..+ ++.+ ++.++++.
T Consensus 221 ~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~----~-~~~~~~~~i--~~~~-~g~l~v~~ 289 (300)
T 2qc5_A 221 SE-YDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQL----Q-TENAEPHGI--TFGK-DGSVWFAL 289 (300)
T ss_dssp EE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEEC----C-STTCCCCCE--EECT-TSCEEEEC
T ss_pred EE-EECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEEC----C-ccCCcccee--EeCC-CCCEEEEc
Confidence 33 222234567899999999997777666799999998 45443 2221 1 112345555 5667 56766655
Q ss_pred ecCCcEEEEecC
Q 001336 1054 LTDGGVYIIEPL 1065 (1097)
Q Consensus 1054 ~~Dg~v~~W~~~ 1065 (1097)
. . .|..+++.
T Consensus 290 ~-~-~i~~~~p~ 299 (300)
T 2qc5_A 290 K-C-KIGKLNLN 299 (300)
T ss_dssp S-S-EEEEEEEC
T ss_pred c-C-ceEEeCCC
Confidence 5 4 77777654
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.39 E-value=1.6e-11 Score=151.56 Aligned_cols=244 Identities=9% Similarity=-0.018 Sum_probs=159.0
Q ss_pred CeeEEEEccCCCeEEEEEeCCC----eEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEE
Q 001336 321 AVKSMDFHPVQQILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 396 (1097)
Q Consensus 321 ~V~~v~fspdg~~lla~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 396 (1097)
.+..++|||||++|+.+.+.+| .|++||+.+++.+.. . .+...+..++|||| +.|
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~-------------------~~~~~~~~~~wspD-~~l 222 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E-------------------LKWVKFSGLAWLGN-DAL 222 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E-------------------EEEEESCCCEESTT-SEE
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c-------------------CCCceeccEEEECC-CEE
Confidence 6789999999998766655444 599999999986542 0 01112357899999 999
Q ss_pred EEEECCCE--------------EEEEEccCCeee-eeeeeeecccCcEEEEEEecCCCcEEEEEEeCC-----CcEEEEE
Q 001336 397 GVAYSKHI--------------VHLYTYHGGDEL-RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RVIKVWD 456 (1097)
Q Consensus 397 as~~~dg~--------------i~iwd~~~~~~~-~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d-----~~i~iwd 456 (1097)
+.++.++. |++|++.++... ........|...+..+.|||||+ +|+..+.+ ..|++||
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~~l~~~d 300 (741)
T 1yr2_A 223 LYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR--WVVITSSEGTDPVNTVHVAR 300 (741)
T ss_dssp EEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--EEEEEEECTTCSCCEEEEEE
T ss_pred EEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC--EEEEEEEccCCCcceEEEEE
Confidence 99887653 889999876521 11111223444689999999999 45555533 4899999
Q ss_pred CCCC--ceeEEeecCCcCeEEEeecccCCccEEEEEcC----CCeEEEEEcCCCC--ceeeecCCCCceEEEEEccCCCE
Q 001336 457 AVTG--TKQYIFEGHESPVYSICPHHKENIQFIFSTAT----DGKIKAWLYDNLG--SRVDYDAPGHSSTMMAYSADGAR 528 (1097)
Q Consensus 457 ~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~ 528 (1097)
+.++ ++...+..+...+....+ ++|+.|+..+. ++.|.+||+++.. ....+..+...+..+.++ ++..
T Consensus 301 ~~~~~~~~~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~l 376 (741)
T 1yr2_A 301 VTNGKIGPVTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRL 376 (741)
T ss_dssp EETTEECCCEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEE
T ss_pred CCCCCCcccEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEE
Confidence 9887 424556556555554432 34566666554 4569999988742 233333333456677776 4445
Q ss_pred EEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEE-e---CCCcEEEEECCCCc
Q 001336 529 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAA-G---DEFMIKFWDMDNVN 594 (1097)
Q Consensus 529 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~dg~i~iwd~~~~~ 594 (1097)
+++...+ +...|.++++. +...+.+..+....+..+.++|+++.++.. + ..+.|++||+.+++
T Consensus 377 v~~~~~d--g~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 377 FASYIHD--AKSQVLAFDLD-GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEET--TEEEEEEEETT-SCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEC--CEEEEEEEeCC-CCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 5555443 34456777764 555566665434478888999998755533 2 45789999999887
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.37 E-value=1.8e-10 Score=125.98 Aligned_cols=242 Identities=12% Similarity=0.086 Sum_probs=164.7
Q ss_pred CCCeEEEEEccCCCEEEE-------EECCCEEEEEEccCCeeeeeeee--eecccCcEEEEEEecC-CCcEEEEEEeCCC
Q 001336 381 TASVNRVMWSPDGTLFGV-------AYSKHIVHLYTYHGGDELRNHLE--IEAHVGSVNDLAFSYP-NKQLSVVTCGEDR 450 (1097)
Q Consensus 381 ~~~V~~v~~spd~~~las-------~~~dg~i~iwd~~~~~~~~~~~~--l~~h~~~V~~l~~s~d-~~~~~l~s~s~d~ 450 (1097)
-....+++|+++|+++++ +..++.|.+||..+++... ... ..++...+.+++++++ +. +++ ++..+
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~g~--l~v-~~~~~ 92 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQCDRDANQ--LFV-ADMRL 92 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEEEEECSSSSE--EEE-EETTT
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCCCCCceEEEecCCCc--EEE-EECCC
Confidence 346789999999998888 6778999999988876432 110 1135567999999999 65 344 44445
Q ss_pred cEEEEECCCCceeEE-eec----CCcCeEEEeecccCCccEEEEEcCC---------------CeEEEEEcCCCCceeee
Q 001336 451 VIKVWDAVTGTKQYI-FEG----HESPVYSICPHHKENIQFIFSTATD---------------GKIKAWLYDNLGSRVDY 510 (1097)
Q Consensus 451 ~i~iwd~~~~~~~~~-~~~----h~~~v~~~~~~~~~~~~~l~s~~~d---------------g~i~iwd~~~~~~~~~~ 510 (1097)
.|.+||.. ++.... ... ....+.++++ +++|.++++...+ +.|..|+.+ ++ ...+
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~--d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~ 167 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAF--DYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQV 167 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEE--CTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEEE
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEE--CCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC-EEEe
Confidence 79999988 765433 221 1235778887 5566777776655 466666654 32 2222
Q ss_pred cCCCCceEEEEEc----cCCCEEEEeeeCCCCCceEEEEeCC-CCe-----eeEEecCCCCcceEEEEEcCCCCEEEEEe
Q 001336 511 DAPGHSSTMMAYS----ADGARLFSCGTNKEGESYLVEWNES-EGA-----VKRTYHGLGKRSVGVVQFDTTKNRFLAAG 580 (1097)
Q Consensus 511 ~~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~-~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 580 (1097)
.........++++ |+++.++.+.. ....|.+||.. +++ ....+..+.......++++++|+.+++..
T Consensus 168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~---~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~ 244 (314)
T 1pjx_A 168 DTAFQFPNGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred ccCCCCcceEEEecccCCCCCEEEEEEC---CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence 2222356788999 99977666542 24479999976 443 22233333202577899999999888888
Q ss_pred CCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEE-ECCCcEEEEEcCC
Q 001336 581 DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS-TNDNGIKILANAD 636 (1097)
Q Consensus 581 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~~dg~i~iw~~~~ 636 (1097)
.++.|.+||.++++.+..+..+ ...+.+++|+++++.|+++ ..++.|..|+...
T Consensus 245 ~~~~i~~~d~~~g~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 245 GSSHIEVFGPDGGQPKMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTTEEEEECTTCBSCSEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEcCCCCcEeEEEeCC--CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8899999999888877777654 3568899999999955544 4567898888764
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.36 E-value=1.6e-10 Score=126.48 Aligned_cols=245 Identities=9% Similarity=0.011 Sum_probs=163.8
Q ss_pred cceEEEEEccCCceeee-------eccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCC-CCCCCCCeeE
Q 001336 740 MRVSRLIYTNSGLAILA-------LASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS-DTNPEDAVPC 811 (1097)
Q Consensus 740 ~~i~~l~~spdg~~l~~-------~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~h~~~v~~ 811 (1097)
....+++|+++|..+++ ...++.|.+|+... ++....... ..++...+.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~----------------------g~~~~~~~~~~~~~~~~~~~ 75 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT----------------------GKKTVICKPEVNGYGGIPAG 75 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT----------------------CCEEEEECCEETTEECCEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC----------------------CcEEEEEecccCCCCCCCce
Confidence 45678999999987777 56778888886542 221111110 0013456889
Q ss_pred EEEccC-CCEEEEEeCCeEEEEEcCCCceeEE-eCC----CCCCeEEEEEeCCCCCEEEEEECC---------------C
Q 001336 812 FALSKN-DSYVMSASGGKISLFNMMTFKTMTT-FMP----PPPAATFLAFHPQDNNIIAIGMED---------------S 870 (1097)
Q Consensus 812 l~~s~d-g~~la~~sdg~i~iwd~~~~~~~~~-~~~----~~~~i~~l~~sp~~~~~la~g~~d---------------g 870 (1097)
++++++ |+++++..++.|.+||.. ++.... ... ....+.++++++ +++++++...+ +
T Consensus 76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence 999999 776666656689999998 665433 221 123488999999 78877776655 5
Q ss_pred cEEEEEcccceEEEEecccccCeEEEEEe----cCCCEEEEE-eCCCcEEEEEcC-CCcccceeeEeecCCCCCCccCCe
Q 001336 871 SIQIYNVRVDEVKTKLKGHQKRITGLAFS----NTLNVLVSS-GADSQLCVWSTD-GWEKQASKFLTIPNGRTASALADT 944 (1097)
Q Consensus 871 ~v~vwd~~~~~~~~~l~~h~~~V~~l~~s----~dg~~l~s~-~~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~ 944 (1097)
.|..|+.. ++.... ..+......++|+ ++++.|+.+ ..++.|.+|+++ .++...........++.. ....
T Consensus 154 ~l~~~~~~-g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~--~~p~ 229 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE--GGAD 229 (314)
T ss_dssp EEEEECTT-SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS--CEEE
T ss_pred eEEEECCC-CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC--CCCC
Confidence 67777765 554332 2344456889999 999765544 567899999986 333222122222221110 2357
Q ss_pred EEEEcCCCcEEEEE-eCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEE-EEecCCeEEEEeCCC
Q 001336 945 RVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIY-VAFEEGSVGVLTAST 1014 (1097)
Q Consensus 945 ~l~~s~dg~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~-s~s~Dg~v~vwd~~~ 1014 (1097)
.++++++|++.++. .++.|.+||.++++.+..+. .+...+.+++|++||++|. +...++.|..|++..
T Consensus 230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe--CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 89999999887774 67899999998787766665 3457899999999999554 445568999999865
No 212
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.32 E-value=2.5e-10 Score=127.22 Aligned_cols=279 Identities=11% Similarity=0.116 Sum_probs=186.9
Q ss_pred cCCCeEEEEEeCC----CeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEE----
Q 001336 329 PVQQILLVVGTNM----GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY---- 400 (1097)
Q Consensus 329 pdg~~lla~gs~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~---- 400 (1097)
|++++++++...+ +.|.++|..+++.+.... .+. .+ .+++||||++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~------------------vG~-~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTD------------------GGF-LP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------ECS-SC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEE------------------CCC-CC--ceEECCCCCEEEEEecccc
Confidence 5666676666655 799999999998876421 122 23 799999999988876
Q ss_pred ------CCCEEEEEEccCCeeeeeeeeee--c---ccCcEEEEEEecCCCcEEEEEEeC--CCcEEEEECCCCceeEEee
Q 001336 401 ------SKHIVHLYTYHGGDELRNHLEIE--A---HVGSVNDLAFSYPNKQLSVVTCGE--DRVIKVWDAVTGTKQYIFE 467 (1097)
Q Consensus 401 ------~dg~i~iwd~~~~~~~~~~~~l~--~---h~~~V~~l~~s~d~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~ 467 (1097)
.++.|.++|..+++.+..+. +. . .......++|+|||+ +++.+.. ++.|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk--~lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNK--NLLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCC--EEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 46789999999988665432 21 0 012345689999999 5565553 6899999999999988876
Q ss_pred cCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceee----ecCCCCc-eEEEEEccCCCEEEEeeeCCCCCceE
Q 001336 468 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD----YDAPGHS-STMMAYSADGARLFSCGTNKEGESYL 542 (1097)
Q Consensus 468 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i 542 (1097)
--.. ....+... ..+++.+.||.+.+.+....+.... +.....+ ...+.+++++..++.... .+.+
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 4221 12222222 4566667788887777744333311 1111111 123567899888777654 2368
Q ss_pred EEEeCCCCeee--EEecCC---------CCcceEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceEEEEec
Q 001336 543 VEWNESEGAVK--RTYHGL---------GKRSVGVVQFDTTKNRFLAAGD----------EFMIKFWDMDNVNLLASIDA 601 (1097)
Q Consensus 543 ~~wd~~~~~~~--~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~ 601 (1097)
.+.|....... ..+... .......++++++++++++... ++.|.++|..+.+.+.++..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 88888654321 111100 0001123689999988777642 35799999999999999875
Q ss_pred CCCCCCcceEEEcCCCC-EEEEEE-CCCcEEEEEcCCCceEEEEe
Q 001336 602 DGGLQASPCIRFNKEGI-LLAVST-NDNGIKILANADGIRLLRTV 644 (1097)
Q Consensus 602 ~~~~~~v~~v~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~~~~~~ 644 (1097)
.. ....++|+|||+ ++++.. .++.|.++|..++ +.++.+
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~tI 409 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRSV 409 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEE
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEEe
Confidence 32 367999999998 888887 5899999999998 555554
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.28 E-value=1.2e-09 Score=118.03 Aligned_cols=229 Identities=10% Similarity=0.061 Sum_probs=151.6
Q ss_pred cceEEEEEccCC-ceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCC
Q 001336 740 MRVSRLIYTNSG-LAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND 818 (1097)
Q Consensus 740 ~~i~~l~~spdg-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 818 (1097)
.-..+..|++++ ..+++...++.|..|+.. ++...... ....+.+++++++|
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~----------------------~~~~~~~~-----~~~~~~~i~~~~dG 65 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSF----------------------TKQVQRVT-----MDAPVSSVALRQSG 65 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETT----------------------TCCEEEEE-----CSSCEEEEEEBTTS
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECC----------------------CCcEEEEe-----CCCceEEEEECCCC
Confidence 345688899864 455555667888888654 22221111 34578999999999
Q ss_pred CEEEEEeCCeEEEEEcCCCceeEEeCCC----CCCeEEEEEeCCCCCEEEEEECC---------CcEEEEEccc-ceEEE
Q 001336 819 SYVMSASGGKISLFNMMTFKTMTTFMPP----PPAATFLAFHPQDNNIIAIGMED---------SSIQIYNVRV-DEVKT 884 (1097)
Q Consensus 819 ~~la~~sdg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~sp~~~~~la~g~~d---------g~v~vwd~~~-~~~~~ 884 (1097)
+++++ .++.|.+||..+++........ ...+..++++| +++++++...+ ..-.||.+.. ++...
T Consensus 66 ~l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~ 143 (297)
T 3g4e_A 66 GYVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK 143 (297)
T ss_dssp SEEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE
T ss_pred CEEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEE
Confidence 95554 5778999999887654333221 23478899999 78877654322 2345665543 33322
Q ss_pred EecccccCeEEEEEecCCCEEE-EEeCCCcEEEEEc--CCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eC
Q 001336 885 KLKGHQKRITGLAFSNTLNVLV-SSGADSQLCVWST--DGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HE 960 (1097)
Q Consensus 885 ~l~~h~~~V~~l~~s~dg~~l~-s~~~Dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d 960 (1097)
+..+......++|+||++.|+ +.+.++.|.+|++ .++.....+.+....... .....++++++|++.++. ..
T Consensus 144 -~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 144 -YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp -EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETT
T ss_pred -EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCC
Confidence 333444568899999998765 4556788999997 444432222222221111 346789999999877765 56
Q ss_pred CeEEEEeCCCcceeeeeeccCCCCCEEEEEEe-cCCCEEEEEec
Q 001336 961 TQIAIYEAPKLECLKQFVPREASGPITHATYS-CDSQSIYVAFE 1003 (1097)
Q Consensus 961 ~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s-~dg~~l~s~s~ 1003 (1097)
+.|.+||.++++.+..+. .+...+++++|. ||++.|..++.
T Consensus 220 ~~v~~~d~~tG~~~~~i~--~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVK--LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TEEEEECTTTCCEEEEEE--CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CEEEEEcCCCceEEEEEE--CCCCCceEEEEeCCCCCEEEEEcC
Confidence 789999999999888876 335689999999 89887766554
No 214
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.28 E-value=4.7e-10 Score=136.94 Aligned_cols=249 Identities=11% Similarity=0.063 Sum_probs=164.8
Q ss_pred CCeeEEEEccCCCeEEEEEeCC----CeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCE
Q 001336 320 SAVKSMDFHPVQQILLVVGTNM----GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 395 (1097)
Q Consensus 320 ~~V~~v~fspdg~~lla~gs~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 395 (1097)
..+..++|||||++|+.+.+.. ..|+|||+.+++.+.. .+ +......++|+ ||+.
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~-------------------~~~k~~~~~Ws-Dg~~ 187 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PL-------------------KDVKFSGISWL-GNEG 187 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EE-------------------EEEESCCCEEE-TTTE
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-cc-------------------CCceeccEEEe-CCCE
Confidence 4577899999999876655443 4799999999986542 10 11113467899 9999
Q ss_pred EEEEECCC-------------EEEEEEccCCeee-eeeeeeec-ccCcEEEEEEecCCCcEEEEEEeC---CCcEEEEEC
Q 001336 396 FGVAYSKH-------------IVHLYTYHGGDEL-RNHLEIEA-HVGSVNDLAFSYPNKQLSVVTCGE---DRVIKVWDA 457 (1097)
Q Consensus 396 las~~~dg-------------~i~iwd~~~~~~~-~~~~~l~~-h~~~V~~l~~s~d~~~~~l~s~s~---d~~i~iwd~ 457 (1097)
|+.++.+. .|++|++.++..- ........ |...+..+.|+|||+. ++++.+. ++.|++||+
T Consensus 188 l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~-l~~~~~~~~~~~~i~~~d~ 266 (693)
T 3iuj_A 188 FFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRF-LLISAANSTSGNRLYVKDL 266 (693)
T ss_dssp EEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCE-EEEEEESSSSCCEEEEEET
T ss_pred EEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCE-EEEEEccCCCCcEEEEEEC
Confidence 99998874 4999999876521 11112333 5556889999999995 3344332 358999999
Q ss_pred CCCc-eeEEeecCCcCeEEEeecccCCccEEEEEcCC---CeEEEEEcCCCCc--eeeecCCCCceEEEEEccCCCEEEE
Q 001336 458 VTGT-KQYIFEGHESPVYSICPHHKENIQFIFSTATD---GKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSADGARLFS 531 (1097)
Q Consensus 458 ~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~ 531 (1097)
.++. ....+..+....... +.+.. +.+++....+ +.|..+++++... ...+..+...+. .|+++++.|+.
T Consensus 267 ~~~~~~~~~l~~~~~~~~~~-~~~~g-~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~ 342 (693)
T 3iuj_A 267 SQENAPLLTVQGDLDADVSL-VDNKG-STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFA 342 (693)
T ss_dssp TSTTCCCEEEECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEE
T ss_pred CCCCCceEEEeCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEE
Confidence 8774 455666666665554 33332 2455555443 6789999987654 123444444444 89999999888
Q ss_pred eeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceE
Q 001336 532 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE----FMIKFWDMDNVNLL 596 (1097)
Q Consensus 532 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~ 596 (1097)
...+ ++...|.+||+..+. .+.+.......+..+.++++++.++....+ +.|+.||+.+++..
T Consensus 343 ~~~~-~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 343 EYMV-DATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEE-TTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEE-CCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 7653 345579999988554 444443333356677788888766655443 78999999887643
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.27 E-value=2.1e-09 Score=116.23 Aligned_cols=229 Identities=9% Similarity=0.003 Sum_probs=155.2
Q ss_pred CCCeEEEEEccCCC-EEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCC
Q 001336 381 TASVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 459 (1097)
Q Consensus 381 ~~~V~~v~~spd~~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~ 459 (1097)
..---+..|+|++. ++++...++.|..||..+++. .. + .....+.+++++++|+ ++++. ++.|.+||..+
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~---~-~~~~~~~~i~~~~dG~--l~v~~--~~~l~~~d~~~ 82 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QR---V-TMDAPVSSVALRQSGG--YVATI--GTKFCALNWKE 82 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EE---E-ECSSCEEEEEEBTTSS--EEEEE--TTEEEEEETTT
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EE---E-eCCCceEEEEECCCCC--EEEEE--CCeEEEEECCC
Confidence 34456889999654 555666788999999988763 21 2 2456799999999998 44443 56899999988
Q ss_pred CceeEEeec----CCcCeEEEeecccCCccEEEEEcC---------CCeEEEEEcCCCCceeeecCCCCceEEEEEccCC
Q 001336 460 GTKQYIFEG----HESPVYSICPHHKENIQFIFSTAT---------DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG 526 (1097)
Q Consensus 460 ~~~~~~~~~----h~~~v~~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 526 (1097)
++....... ....++++++ +++|+++++... ...-.+|.++.................++|+|++
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~--d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg 160 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKV--DPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDH 160 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEE--CTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTS
T ss_pred CcEEEEEecCCCCCCCCCCCEEE--CCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCC
Confidence 875433321 1234777887 566776665422 1334566655433333332233356789999999
Q ss_pred CEEEEeeeCCCCCceEEEEeC--CCCeee-----EEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001336 527 ARLFSCGTNKEGESYLVEWNE--SEGAVK-----RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI 599 (1097)
Q Consensus 527 ~~l~~~~~~~~~~~~i~~wd~--~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 599 (1097)
+.|+.+... ...|..|++ .++... ..+.... .....+++.++|++.++...++.|.+||.++++.+..+
T Consensus 161 ~~lyv~~~~---~~~i~~~~~d~~~G~~~~~~~~~~~~~~~-~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i 236 (297)
T 3g4e_A 161 KIFYYIDSL---SYSVDAFDYDLQTGQISNRRSVYKLEKEE-QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTV 236 (297)
T ss_dssp CEEEEEEGG---GTEEEEEEECTTTCCEEEEEEEEECCGGG-CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEE
T ss_pred CEEEEecCC---CCcEEEEeccCCCCcccCcEEEEECCCCC-CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEE
Confidence 987665432 346889986 455432 2222222 25778999999988888878889999999999999988
Q ss_pred ecCCCCCCcceEEEc-CCCCEEEEEECC
Q 001336 600 DADGGLQASPCIRFN-KEGILLAVSTND 626 (1097)
Q Consensus 600 ~~~~~~~~v~~v~~s-~~~~~l~s~~~d 626 (1097)
..+ ...+++++|. |+++.|++++..
T Consensus 237 ~~p--~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 237 KLP--VDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp ECS--SSBEEEEEEESGGGCEEEEEEBC
T ss_pred ECC--CCCceEEEEeCCCCCEEEEEcCC
Confidence 765 4578999998 788777666543
No 216
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.26 E-value=2.6e-10 Score=126.28 Aligned_cols=274 Identities=11% Similarity=0.035 Sum_probs=174.9
Q ss_pred CCeeEEEEccCCCeEEEEEe--CCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 320 SAVKSMDFHPVQQILLVVGT--NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 320 ~~V~~v~fspdg~~lla~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
..+..++++|+|+ ++++.. .++.+.||.+.+++.. .+.-|. ....+|-..+..++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6899999999998 445543 2343667766544322 111000 01235667899999999998766
Q ss_pred EEEC-----CCEEEEEEccCCeeeeeeeeee----cccCcEEEEEEecCCCcEEEEEEe---CCCcEEEEECCCCceeEE
Q 001336 398 VAYS-----KHIVHLYTYHGGDELRNHLEIE----AHVGSVNDLAFSYPNKQLSVVTCG---EDRVIKVWDAVTGTKQYI 465 (1097)
Q Consensus 398 s~~~-----dg~i~iwd~~~~~~~~~~~~l~----~h~~~V~~l~~s~d~~~~~l~s~s---~d~~i~iwd~~~~~~~~~ 465 (1097)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999998755432 221 22345689999987653 456655 688999999999988777
Q ss_pred eecCCcCeE-EEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEE
Q 001336 466 FEGHESPVY-SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 544 (1097)
Q Consensus 466 ~~~h~~~v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 544 (1097)
+.+|..... ...+ ..+|..+.+.+.++.++.|. ..+..++|+|+|+.|+++...+ ..+..
T Consensus 161 ~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~---~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDL--VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHS---TSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCC--EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSC---SEEEE
T ss_pred ecCCCcccccccce--eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCC---CeEEE
Confidence 766532211 0222 22445666677788776653 2367899999999888876432 24555
Q ss_pred EeCC---CC-----eeeE--EecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEc
Q 001336 545 WNES---EG-----AVKR--TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN 614 (1097)
Q Consensus 545 wd~~---~~-----~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 614 (1097)
++.. .+ +... ...++.. ....++++++|+.+++...++.|.+||..+++........ ......+++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~ 299 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFG 299 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEEC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEEC
Confidence 5532 11 0000 1111211 3456899999998888889999999998667654433321 23456799999
Q ss_pred CCCCEEEEEECCCcEE
Q 001336 615 KEGILLAVSTNDNGIK 630 (1097)
Q Consensus 615 ~~~~~l~s~~~dg~i~ 630 (1097)
+++.++++.+..+.+.
T Consensus 300 ~~g~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 300 SDGYLYFDCNQLHHSA 315 (343)
T ss_dssp TTSCEEEEECCGGGSG
T ss_pred CCCcEEEEeCcccccc
Confidence 9888777776554443
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.26 E-value=1.5e-09 Score=122.68 Aligned_cols=240 Identities=12% Similarity=0.018 Sum_probs=162.7
Q ss_pred CCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEE
Q 001336 320 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 399 (1097)
Q Consensus 320 ~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 399 (1097)
.....|+|+|+|+ |+++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4688999999998 777877889999999998765431 111 12223 9999999999998
Q ss_pred ECCC--EEEEEEccCCeeeeeeeeeec-ccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE----eecCCcC
Q 001336 400 YSKH--IVHLYTYHGGDELRNHLEIEA-HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI----FEGHESP 472 (1097)
Q Consensus 400 ~~dg--~i~iwd~~~~~~~~~~~~l~~-h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~----~~~h~~~ 472 (1097)
..++ .|.+|+..++........+.. +...+.+++++|++. .|+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g--~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE--WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS--EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC--eEEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8866 899999887654332211222 456678899999555 344577788999999987764332 2222222
Q ss_pred e--EEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCC---------------CCceEEEEEccCCCEEEEeeeC
Q 001336 473 V--YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP---------------GHSSTMMAYSADGARLFSCGTN 535 (1097)
Q Consensus 473 v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~~~ 535 (1097)
- ..++|++. ++.++++-..++.|+.|+.+.. ...+... -.....++++++|+++++-.
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 27888543 3567777778899999987643 2222221 12478899999999666542
Q ss_pred CCCCceEEEEeCCCCeeeEEecCCC--------------CcceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001336 536 KEGESYLVEWNESEGAVKRTYHGLG--------------KRSVGVVQFDTTKNRFLAAGDEFMIKFWDM 590 (1097)
Q Consensus 536 ~~~~~~i~~wd~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 590 (1097)
.....|+.|++.++... .+.++. -.....+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 02557999998777643 333320 125778999999877777778888888765
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.24 E-value=3.5e-09 Score=119.61 Aligned_cols=239 Identities=8% Similarity=0.060 Sum_probs=162.4
Q ss_pred CCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCC--cEEEEECCC
Q 001336 382 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVT 459 (1097)
Q Consensus 382 ~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~i~iwd~~~ 459 (1097)
.....|+|+++++++++...++.|++||..++..... ... ..... ++|+++++ .|+++..++ .|.+|+..+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~---~~~-~~~~~-ia~~~~g~--~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV---HPG-FKGGK-PAVTKDKQ--RVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEE---EET-CCBCB-CEECTTSS--EEEEEBSSTTCEEEEEEGGG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEe---ecc-CCCCc-eeEecCCC--cEEEEecCCCceEEEEEcCC
Confidence 4788999999999888877789999999998764331 222 22233 99999999 677777765 799999877
Q ss_pred CceeEEe----ecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceee----ecCCCCce-E-EEEEccCCCEE
Q 001336 460 GTKQYIF----EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD----YDAPGHSS-T-MMAYSADGARL 529 (1097)
Q Consensus 460 ~~~~~~~----~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~v-~-~~~~s~~~~~l 529 (1097)
+.....+ ......+.++++++. ++ .|+.+..++.|+.||.++...... ........ . .++|+|++..|
T Consensus 204 ~~~~~~~g~~~~~~~~~p~~iav~p~-~g-~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 204 GWAPTRIGQLGSTFSGKIGAVALDET-EE-WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp TTCEEEEEECCTTSCSCCCBCEECTT-SS-EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred CceeEEeeeccchhcCCcEEEEEeCC-CC-eEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence 6654444 224456777888442 33 455577789999999886654332 21222222 3 89999965555
Q ss_pred EEeeeCCCCCceEEEEeCCCCeeeEEecCCC--------------CcceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc
Q 001336 530 FSCGTNKEGESYLVEWNESEGAVKRTYHGLG--------------KRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVN 594 (1097)
Q Consensus 530 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 594 (1097)
+.+.. ....|+.|+.... +..+.++. -.....++++++|+++++-. .++.|+.|++.+++
T Consensus 282 yv~d~---~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 282 YMSDQ---NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp EEEET---TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred EEEeC---CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 55432 3557999987644 23333321 12467899999999887777 88999999988876
Q ss_pred eEEEEecCC------------CCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001336 595 LLASIDADG------------GLQASPCIRFNKEGILLAVSTNDNGIKILAN 634 (1097)
Q Consensus 595 ~~~~~~~~~------------~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~ 634 (1097)
........+ .......+++++++.++++-..++.|+.+++
T Consensus 357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 544332100 0234678999999888887777888887764
No 219
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.24 E-value=4.2e-10 Score=137.35 Aligned_cols=245 Identities=11% Similarity=0.124 Sum_probs=162.1
Q ss_pred CCCCCCeEEEEEccCCCEEEEEE-----CCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCC--
Q 001336 378 SDYTASVNRVMWSPDGTLFGVAY-----SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR-- 450 (1097)
Q Consensus 378 ~~h~~~V~~v~~spd~~~las~~-----~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~-- 450 (1097)
.+|...+..++|||||++||.+. .+..|++||+.+|+.+.. .+.+. ....++|+ |++ .|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~--k~~~~~Ws-Dg~--~l~y~~~~~~~ 197 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKDV--KFSGISWL-GNE--GFFYSSYDKPD 197 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEEE--ESCCCEEE-TTT--EEEEEESSCCC
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCCc--eeccEEEe-CCC--EEEEEEecCcc
Confidence 35667899999999999998643 235799999999985442 12221 13567999 999 567666663
Q ss_pred -----------cEEEEECCCCce----eEEeec-CCcCeEEEeecccCCccEEEEEc----CCCeEEEEEcCCCC-ceee
Q 001336 451 -----------VIKVWDAVTGTK----QYIFEG-HESPVYSICPHHKENIQFIFSTA----TDGKIKAWLYDNLG-SRVD 509 (1097)
Q Consensus 451 -----------~i~iwd~~~~~~----~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~-~~~~ 509 (1097)
.|++|++.++.. +..... |...+..+.+ ++||++|+... .++.|.++|+++.. ....
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATV--TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEE--CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEE--cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence 499999987653 322233 4445667777 56667764432 23589999988764 3344
Q ss_pred ecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCee--eEEecCCCCcceEEEEEcCCCCEEEEEe-CCC--c
Q 001336 510 YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV--KRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEF--M 584 (1097)
Q Consensus 510 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg--~ 584 (1097)
+..+....... ++++|..|+..+........|..+|+.++.. .+.+..+.. .+. .|+++++.|+... .++ .
T Consensus 276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~--~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-QVL--TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-SCE--EEEEETTEEEEEEEETTEEE
T ss_pred EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-CEE--EEEEECCEEEEEEEECCeeE
Confidence 44444444444 7788887777665433457899999988754 344555554 333 8889998888776 444 6
Q ss_pred EEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECC----CcEEEEEcCCC
Q 001336 585 IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND----NGIKILANADG 637 (1097)
Q Consensus 585 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d----g~i~iw~~~~~ 637 (1097)
|++|++..+ ....+.... ...+..+.+++++..++....+ +.+..||+.++
T Consensus 352 l~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 352 VEQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 899998754 445554321 3345667778888766665544 78999998776
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.23 E-value=1.6e-09 Score=117.82 Aligned_cols=230 Identities=13% Similarity=0.072 Sum_probs=155.9
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEE
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 397 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 397 (1097)
+........|+|+|++|++++..++.|..|+. +++... +..+...+..++++++|++++
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG~l~v 101 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQRLVH 101 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTSCEEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCCCEEE
Confidence 45567899999999988899999999999998 443211 223456789999999999777
Q ss_pred EEECCCEEEEEEccCCeeeeeeeeeecc-cCcEEEEEEecCCCcEEEEE----EeC-------------CCcEEEEECCC
Q 001336 398 VAYSKHIVHLYTYHGGDELRNHLEIEAH-VGSVNDLAFSYPNKQLSVVT----CGE-------------DRVIKVWDAVT 459 (1097)
Q Consensus 398 s~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~V~~l~~s~d~~~~~l~s----~s~-------------d~~i~iwd~~~ 459 (1097)
+...++.|.+|+.. ++.........+. ...+..+++.++|. +.+| |.. .+.|..||..+
T Consensus 102 ~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 102 CEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp EETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred EECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 66667889999986 5422111111111 23467899999998 6665 332 25688888777
Q ss_pred CceeEEeecCCcCeEEEeecccCCccEEEEEcCC------CeEEEEEcCCCCc---eeeecCCCCceEEEEEccCCCEEE
Q 001336 460 GTKQYIFEGHESPVYSICPHHKENIQFIFSTATD------GKIKAWLYDNLGS---RVDYDAPGHSSTMMAYSADGARLF 530 (1097)
Q Consensus 460 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~ 530 (1097)
++..... .....+.++| +++++.|+.+... +.|.+|++..... .............++++++|++.+
T Consensus 179 g~~~~~~--~~~~p~gl~~--spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv 254 (305)
T 3dr2_A 179 SPLQRMA--DLDHPNGLAF--SPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS 254 (305)
T ss_dssp CCCEEEE--EESSEEEEEE--CTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE
T ss_pred CcEEEEe--cCCCCcceEE--cCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE
Confidence 7654433 3345677888 5566767666554 7899999875431 111112233456789999999555
Q ss_pred EeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCc
Q 001336 531 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM 584 (1097)
Q Consensus 531 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 584 (1097)
+. . + .|.+|+. +++.+..+.... .+..++|+++++.|+.++.++.
T Consensus 255 ~~-~----~-gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 255 SS-G----T-GVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp CC-S----S-EEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTEE
T ss_pred ec-C----C-cEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCeE
Confidence 43 2 1 3999998 466666666544 4778999999988888887643
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.23 E-value=3.7e-10 Score=123.91 Aligned_cols=200 Identities=9% Similarity=-0.012 Sum_probs=128.2
Q ss_pred eEEEEccCCCEEEEEe---CCeEEE--EEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEccc-----
Q 001336 810 PCFALSKNDSYVMSAS---GGKISL--FNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV----- 879 (1097)
Q Consensus 810 ~~l~~s~dg~~la~~s---dg~i~i--wd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~----- 879 (1097)
..+++||||++++++. ++.+.+ +|..+ +.++.... . ..+.|++...+++.+.||.+.+.++.+
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 3578888888888876 256888 88876 34443211 1 223343455666777889888889886
Q ss_pred ceEEEE----ecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCC----CCCCccCCeEEEEcCC
Q 001336 880 DEVKTK----LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNG----RTASALADTRVQFHLD 951 (1097)
Q Consensus 880 ~~~~~~----l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~l~~s~d 951 (1097)
++.... +.-...+. . ++++..++..+. +.|.+.|+.+........+.+... ..........++|++|
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d 274 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN 274 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC
Confidence 443311 11122333 3 667777666666 899999987533111111111100 0000022333789999
Q ss_pred CcEEEEE-e-C--------CeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCE-EEEEe-cCCeEEEEeCCCCceee
Q 001336 952 QTHLLAV-H-E--------TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQS-IYVAF-EEGSVGVLTASTLRLRC 1019 (1097)
Q Consensus 952 g~~l~~~-~-d--------~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~-l~s~s-~Dg~v~vwd~~~~~~~~ 1019 (1097)
++.++++ . . +.+.++|+.+++.+..+.... ...+++|++||++ +++.. .+++|.|+|+.+++.+.
T Consensus 275 g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 9988874 3 2 367799999999999887532 6889999999985 55555 48999999999999998
Q ss_pred eeCCC
Q 001336 1020 RINPT 1024 (1097)
Q Consensus 1020 ~~~~~ 1024 (1097)
++...
T Consensus 352 ~I~vg 356 (368)
T 1mda_H 352 SVELD 356 (368)
T ss_dssp ECCCC
T ss_pred EEECC
Confidence 88733
No 222
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.22 E-value=2.3e-05 Score=92.85 Aligned_cols=532 Identities=10% Similarity=0.000 Sum_probs=283.9
Q ss_pred EEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeE
Q 001336 395 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 474 (1097)
Q Consensus 395 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~ 474 (1097)
+|+.+ ....|+..++.+..... ...+. .-..+..++|.+.+.. ++++-..++.|..+++........+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44444 45678888887654221 11122 2345789999997774 455666788999999865544333332223456
Q ss_pred EEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeE
Q 001336 475 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR 554 (1097)
Q Consensus 475 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 554 (1097)
.+++.+. .+++.++-...+.|.+.+++.................+++.|....|...-.. ....|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g--~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG--GKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC--CCCEEEEEeCCCCceEE
Confidence 7777443 33566666777899999987655444443444567899999966666655321 14568888876544333
Q ss_pred EecCCCCcceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEE
Q 001336 555 TYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 633 (1097)
Q Consensus 555 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~ 633 (1097)
.... ......++++++++.|+.+. ..+.|..++++.... ..+... ......+++.. +.++++-...+.|...|
T Consensus 161 l~~~--~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 161 LVPN--VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EECS--CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EECC--CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 3332 23678899999887777776 678899999976544 333322 22345777764 34444444577888888
Q ss_pred cCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccc
Q 001336 634 NADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEK 713 (1097)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 713 (1097)
..++.. ...+.........+ . .+.+.. + ...+. ... ...+.
T Consensus 235 k~tg~~-~~~l~~~~~~p~~i-----------~-------v~~~~~-q--------~~~n~----------C~~-~ng~C 275 (628)
T 4a0p_A 235 KTSGQN-RTIIQGHLDYVMDI-----------L-------VFHSSR-Q--------SGWNE----------CAS-SNGHC 275 (628)
T ss_dssp TTTCCS-CEEEECSCCSCCEE-----------E-------EECGGG-S--------CCCCT----------TTT-TGGGC
T ss_pred CCCCCc-eEEEecCCCCccee-----------e-------eeeecc-c--------ccceE----------ecc-CCCCc
Confidence 766632 22222211110000 0 000000 0 00000 000 00000
Q ss_pred cccccccccCCCceeeEeccCC--CcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCC
Q 001336 714 SRIWKLTEITEPSQCRSLRLPD--NLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPP 791 (1097)
Q Consensus 714 i~~w~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~ 791 (1097)
-.+- +........| ..+. .......+|. +...+|+.+.. ..|+-..+.. .
T Consensus 276 ~~~C-~~~~~~~~~C---~C~~g~~l~~d~~~C~---~~~~~Ll~s~~-~~i~~i~l~~--------------------~ 327 (628)
T 4a0p_A 276 SHLC-LAVPVGGFVC---GCPAHYSLNADNRTCS---APTTFLLFSQK-SAINRMVIDE--------------------Q 327 (628)
T ss_dssp SSEE-EEETTTEEEE---ECSTTCEECTTSSCEE---CCSSEEEEEET-TEEEEECCCT--------------------T
T ss_pred chhh-hcCCCCCeeE---EcCCCcEecccCCcCc---cccceeeeecc-ceEEEEeccc--------------------c
Confidence 0000 0000000000 0000 0000111111 11223333332 2333222210 0
Q ss_pred CCccccccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEcCCCceeEEeCC------CCCCeEEEEEeCCCCCEE
Q 001336 792 SGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMP------PPPAATFLAFHPQDNNII 863 (1097)
Q Consensus 792 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~sp~~~~~l 863 (1097)
........+. .-..+.+++|.+.+..|..+. .+.|+.++.........+.. ....+..+++....+++.
T Consensus 328 ~~~~~~l~~~---~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY 404 (628)
T 4a0p_A 328 QSPDIILPIH---SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIY 404 (628)
T ss_dssp CCCCEECCCT---TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEE
T ss_pred cCceEEEEeh---hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEE
Confidence 0000011111 235578999999888887776 57898888764433333332 234688999998334455
Q ss_pred EEEECCCcEEEEEcccceEEEEe-cccccCeEEEEEec-CCCEEEEEeCCC--cEEEEEcCCCcccceeeEeecCCCCCC
Q 001336 864 AIGMEDSSIQIYNVRVDEVKTKL-KGHQKRITGLAFSN-TLNVLVSSGADS--QLCVWSTDGWEKQASKFLTIPNGRTAS 939 (1097)
Q Consensus 864 a~g~~dg~v~vwd~~~~~~~~~l-~~h~~~V~~l~~s~-dg~~l~s~~~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 939 (1097)
.+-+..+.|.+.++. |+....+ ........+|++.| .|.++++-.... .|...+++.... ..+ +... .
T Consensus 405 ~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~---~~l-~~~~-l-- 476 (628)
T 4a0p_A 405 WTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER---EVL-FFSG-L-- 476 (628)
T ss_dssp EEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC---EEE-ECSS-C--
T ss_pred EEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc---EEE-Eecc-C--
Confidence 566677899999986 4444333 33446689999999 555445433222 466666654321 111 1111 1
Q ss_pred ccCCeEEEEcCCCcEEEEE--eCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCce
Q 001336 940 ALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRL 1017 (1097)
Q Consensus 940 ~~~v~~l~~s~dg~~l~~~--~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~ 1017 (1097)
.....+++++++..|..+ ..+.|..++++.. ....+.. ..-....++++.. +.++.+=...+.|...|-.+|+.
T Consensus 477 -~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~-~r~~~~~-~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~ 552 (628)
T 4a0p_A 477 -SKPIALALDSRLGKLFWADSDLRRIESSDLSGA-NRIVLED-SNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREG 552 (628)
T ss_dssp -SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEC-SSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSC
T ss_pred -CCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC-ceEEEEc-CCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCC
Confidence 346889999998888775 3478999999643 3333332 2234567888765 44555554567888888877765
Q ss_pred eeee
Q 001336 1018 RCRI 1021 (1097)
Q Consensus 1018 ~~~~ 1021 (1097)
...+
T Consensus 553 ~~~i 556 (628)
T 4a0p_A 553 RTKV 556 (628)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 4433
No 223
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.21 E-value=2e-10 Score=126.13 Aligned_cols=173 Identities=13% Similarity=0.099 Sum_probs=133.8
Q ss_pred CCeeEEEEccCCCEEEEEeCCeEEEEEcCCCc-----------eeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEE
Q 001336 807 DAVPCFALSKNDSYVMSASGGKISLFNMMTFK-----------TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIY 875 (1097)
Q Consensus 807 ~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~-----------~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vw 875 (1097)
..+..+++++...++++|+...+.+|++++.+ ..... .+.. |+.++| ++++|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 46889999999999999997788889875433 11222 2555 999999 56788888 78999999
Q ss_pred EcccceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEE
Q 001336 876 NVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHL 955 (1097)
Q Consensus 876 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 955 (1097)
|+.+.........|..++.++.+.+.. ++++..||.|.+||++.+... .. ...|++++|||+| ..
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~-----~~-------~~~Vs~v~WSpkG-~~ 176 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTK-----QL-------AQNVTSFDVTNSQ-LA 176 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEE-----EE-------EESEEEEEECSSE-EE
T ss_pred EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCccc-----cc-------cCCceEEEEcCCc-eE
Confidence 998765555566777888888877553 888999999999999976532 11 1359999999999 44
Q ss_pred EEEeCCeEEEEeCCCcce--eeeeec----c---CCCCCEEEEEEecCCCEEEE
Q 001336 956 LAVHETQIAIYEAPKLEC--LKQFVP----R---EASGPITHATYSCDSQSIYV 1000 (1097)
Q Consensus 956 ~~~~d~~v~vwd~~~~~~--~~~~~~----~---~h~~~v~~v~~s~dg~~l~s 1000 (1097)
+...||++++|+.+.++. ...+.. . +|...|.+++|.+++.+|++
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 446899999999987775 444421 1 47889999999999999886
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.20 E-value=2.5e-10 Score=126.34 Aligned_cols=271 Identities=9% Similarity=0.008 Sum_probs=172.6
Q ss_pred cceEEEEEccCCceeeeecc--CcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccC
Q 001336 740 MRVSRLIYTNSGLAILALAS--NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 817 (1097)
Q Consensus 740 ~~i~~l~~spdg~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 817 (1097)
..+..++++++|+.+++... ++.++||.+.. ++.. -|- +.. . ....+-..+..++++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~------g~~~------~~p--~~~---~--~~~~~~~~p~gv~~d~~ 77 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ------DGLI------PFP--PQS---G--NAIITFDTVLGIKSDGN 77 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET------TEEE------ESC--CCC---S--SCCCCCSCEEEEEECSS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC------CCee------cCC--Ccc---c--CcccceeEeeEEEEcCC
Confidence 56889999999998887542 33355655431 1111 000 000 0 01125678999999999
Q ss_pred CCEEEEEe------CCeEEEEEcCCCceeEEeCCC------CCCeEEEEEeCCCCCEEEEEE---CCCcEEEEEcccceE
Q 001336 818 DSYVMSAS------GGKISLFNMMTFKTMTTFMPP------PPAATFLAFHPQDNNIIAIGM---EDSSIQIYNVRVDEV 882 (1097)
Q Consensus 818 g~~la~~s------dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~~~~~la~g~---~dg~v~vwd~~~~~~ 882 (1097)
|+++++.. +++|.+||+.+++.+..+..+ ...+..++++++++..+++.. .++.|.+||+.+++.
T Consensus 78 g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 78 GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 98776653 378999999999877766432 234689999983454555554 578999999999988
Q ss_pred EEEecccccCeE-EEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEe-C
Q 001336 883 KTKLKGHQKRIT-GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVH-E 960 (1097)
Q Consensus 883 ~~~l~~h~~~V~-~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-d 960 (1097)
...+.+|..... ...++++|..+.+.+.|+.++.|.. .+..++|+|||+.|+++. .
T Consensus 158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~~ 215 (343)
T 2qe8_A 158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPMH 215 (343)
T ss_dssp EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEESS
T ss_pred EEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeCC
Confidence 777766533211 1445667878888888887765531 246799999999888853 3
Q ss_pred -CeEEEEeCCC---c-----ceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCC
Q 001336 961 -TQIAIYEAPK---L-----ECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNP 1031 (1097)
Q Consensus 961 -~~v~vwd~~~---~-----~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h 1031 (1097)
+.+..++... + +....+...++.+....++++++|.++++...++.|.+||..+++........
T Consensus 216 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~------- 288 (343)
T 2qe8_A 216 STSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE------- 288 (343)
T ss_dssp CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-------
T ss_pred CCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-------
Confidence 3555554321 1 11111111123345667999999999999989999999998666643322211
Q ss_pred CCceeeEEEEEcCCCCCEEEEEecCCcEE
Q 001336 1032 SLRVYPLVIAGNPTDPNQFALGLTDGGVY 1060 (1097)
Q Consensus 1032 ~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~ 1060 (1097)
.-..+-.++|.+ ++.++++.+..+.+.
T Consensus 289 -~~~~p~~va~~~-~g~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 289 -KLSWTDSFNFGS-DGYLYFDCNQLHHSA 315 (343)
T ss_dssp -GGSCEEEEEECT-TSCEEEEECCGGGSG
T ss_pred -ceecCCeeEECC-CCcEEEEeCcccccc
Confidence 012344557878 578888887665543
No 225
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.18 E-value=2e-08 Score=110.02 Aligned_cols=225 Identities=14% Similarity=0.065 Sum_probs=147.2
Q ss_pred CeEEEEEccCCC-EEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001336 383 SVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 461 (1097)
Q Consensus 383 ~V~~v~~spd~~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~ 461 (1097)
-..+.+|+|++. ++++...++.|..||..+++... +. +...+.+++|+++|+ ++++. . ..|.+||..+++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~----~~-~~~~v~~i~~~~dg~--l~v~~-~-~gl~~~d~~~g~ 120 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV----HA-LPFMGSALAKISDSK--QLIAS-D-DGLFLRDTATGV 120 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE----EE-CSSCEEEEEEEETTE--EEEEE-T-TEEEEEETTTCC
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE----EE-CCCcceEEEEeCCCe--EEEEE-C-CCEEEEECCCCc
Confidence 346788999755 55556678899999998876321 22 346799999999998 45543 4 459999998887
Q ss_pred eeEEeec----CCcCeEEEeecccCCccEEEEEcCC----CeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEee
Q 001336 462 KQYIFEG----HESPVYSICPHHKENIQFIFSTATD----GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG 533 (1097)
Q Consensus 462 ~~~~~~~----h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 533 (1097)
....... ....++++++ +++|.++++...+ +...+|.+++ .....+.........++|+|+++.++.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~i~~--d~~G~l~v~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 121 LTLHAELESDLPGNRSNDGRM--HPSGALWIGTMGRKAETGAGSIYHVAK-GKVTKLFADISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp EEEEECSSTTCTTEEEEEEEE--CTTSCEEEEEEETTCCTTCEEEEEEET-TEEEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred EEEEeeCCCCCCCCCCCCEEE--CCCCCEEEEeCCCcCCCCceEEEEEeC-CcEEEeeCCCcccCCeEEcCCCCEEEEEE
Confidence 5433221 1235778887 5566766654321 2234444443 22222222223567899999999877664
Q ss_pred eCCCCCceEEEEeCC--CC-ee-----eEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCC
Q 001336 534 TNKEGESYLVEWNES--EG-AV-----KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGL 605 (1097)
Q Consensus 534 ~~~~~~~~i~~wd~~--~~-~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 605 (1097)
. ....|.+||.. ++ .. ...+.... .....+++.++|+++++...++.|.+|+. +++.+..+..+ .
T Consensus 198 ~---~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~-~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~--~ 270 (326)
T 2ghs_A 198 T---KVNRLMRVPLDARTGLPTGKAEVFIDSTGIK-GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP--G 270 (326)
T ss_dssp T---TTCEEEEEEBCTTTCCBSSCCEEEEECTTSS-SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS--C
T ss_pred C---CCCEEEEEEcccccCCcccCceEEEECCCCC-CCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC--C
Confidence 2 24579999975 55 32 22232222 25678999999988877777789999998 67777777654 4
Q ss_pred CCcceEEEc-CCCCEEEEEECC
Q 001336 606 QASPCIRFN-KEGILLAVSTND 626 (1097)
Q Consensus 606 ~~v~~v~~s-~~~~~l~s~~~d 626 (1097)
..+.+++|+ +++..|++++..
T Consensus 271 ~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 271 KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp SBEEEEEEESTTSCEEEEEEBC
T ss_pred CCcEEEEEecCCCCEEEEEecC
Confidence 468899998 888777665544
No 226
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.17 E-value=7.6e-10 Score=121.53 Aligned_cols=183 Identities=14% Similarity=0.130 Sum_probs=132.6
Q ss_pred CeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEE
Q 001336 321 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 400 (1097)
Q Consensus 321 ~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 400 (1097)
.++.+++++... ++++|+.++ +.||+++........ . ...++......+.. |+.++| |+++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~~-l~v~~~~~l~~~~~~-------~--~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHITS-------D--STPLTFKWEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHHS-------S--SCCCCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCCE-EEEEEhhHhhhhhcc-------c--cccccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence 688999999998 457777775 555997654310000 0 00001101223566 999999 99999999
Q ss_pred CCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecc
Q 001336 401 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH 480 (1097)
Q Consensus 401 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 480 (1097)
.++.|++||+.+..... ....|...|.++.+.+. -+++++.||.|.+||+.++.... +...|.|++|+
T Consensus 104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WS- 171 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVT- 171 (388)
T ss_dssp ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEEC-
T ss_pred cCCcEEEEEchhhhccC---ccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEc-
Confidence 88999999998765333 35567888988887754 27888999999999999887653 45689999995
Q ss_pred cCCccEEEEEcCCCeEEEEEcCCCCc--eeee------c---CCCCceEEEEEccCCCEEEEee
Q 001336 481 KENIQFIFSTATDGKIKAWLYDNLGS--RVDY------D---APGHSSTMMAYSADGARLFSCG 533 (1097)
Q Consensus 481 ~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~------~---~~~~~v~~~~~s~~~~~l~~~~ 533 (1097)
++| ++.|..||++++|+.+.... ...+ . .+...|.++.|.+++.++++-.
T Consensus 172 -pkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 172 -NSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp -SSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred -CCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 454 67899999999998887664 3333 2 2567899999999998888654
No 227
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.17 E-value=1.9e-05 Score=93.55 Aligned_cols=526 Identities=9% Similarity=0.004 Sum_probs=264.3
Q ss_pred CCEEEEEEccCCe-eeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCce-eEEeecCCcCeEEEeec
Q 001336 402 KHIVHLYTYHGGD-ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QYIFEGHESPVYSICPH 479 (1097)
Q Consensus 402 dg~i~iwd~~~~~-~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~ 479 (1097)
...|+..++.... ... .+...-.....++|++.+.. ++++-...+.|..+++..... ...+..--.....+++.
T Consensus 17 ~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD 92 (619)
T 3s94_A 17 RRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 92 (619)
T ss_dssp SSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEE
T ss_pred cccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEE
Confidence 3456777776532 111 12223345789999997774 444555577899999865532 22333333567888885
Q ss_pred ccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCC
Q 001336 480 HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 559 (1097)
Q Consensus 480 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 559 (1097)
+. ++.+.++-...+.|.+.+++.................+++.|.+.+|...... ....|...++...........
T Consensus 93 ~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~~~l~~~- 168 (619)
T 3s94_A 93 WL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINS- 168 (619)
T ss_dssp TT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEEEECS-
T ss_pred ec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCceEEEEeC-
Confidence 43 33566666778999999988655444443444467789999976666655322 134677777654333222222
Q ss_pred CCcceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001336 560 GKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGI 638 (1097)
Q Consensus 560 ~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~ 638 (1097)
.......+++++++..|+.+. ..+.|...+++........... ......+++..+ .++.+-...+.|...|..++.
T Consensus 169 ~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 169 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence 223678899999877777765 6778999998765443333211 222357777655 444444456788888887773
Q ss_pred eEEEEecccccccccccccccccCCcccccccCccccccccccccc-cccccccCCCCCCCccccCcccccccccccccc
Q 001336 639 RLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTA-PAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIW 717 (1097)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w 717 (1097)
. ...+.........+ ..+.+...+.+ ...|.... .-..+-...+. .....+.+.+|..
T Consensus 246 ~-~~~i~~~~~~p~~i----~v~~~~~qp~~-------~n~C~~~ng~Cs~lCl~~~~------~~~~~C~C~~g~~--- 304 (619)
T 3s94_A 246 G-LREIHSDIFSPMDI----HAFSQQRQPNA-------TNPCGIDNGGCSHLCLMSPV------KPFYQCACPTGVK--- 304 (619)
T ss_dssp C-CEECCSCCCCCSEE----EECCGGGSCCC-------CCTTTTTGGGCSSEEEECSS------TTSEEEECCTTCC---
T ss_pred c-cEEEecCCCCCcEE----EEEccccCCCc-------cccccCCCCcccceEECCCC------CCCceEeCCchhe---
Confidence 2 23322211111000 00000000000 00000000 00000000000 0000000000000
Q ss_pred cccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCcccc
Q 001336 718 KLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT 797 (1097)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 797 (1097)
+. ....+|. .....+|+.+.. +.|+..++.... .....
T Consensus 305 -l~------------------~d~~~C~--~~~~~~Ll~~~~-~~i~~i~l~~~~--------------------~~~~~ 342 (619)
T 3s94_A 305 -LL------------------ENGKTCK--DGATELLLLARR-TDLRRISLDTPD--------------------FTDIV 342 (619)
T ss_dssp -BC------------------TTSSCBC--SSCSEEEEEEES-SCEEEEESSSTT--------------------CCCEE
T ss_pred -ec------------------ccCcccC--CCCceEEEEEcc-cceEEEecCCCc--------------------cceeE
Confidence 00 0000000 011223333332 334443333110 00111
Q ss_pred ccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEE
Q 001336 798 NDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIY 875 (1097)
Q Consensus 798 ~~~~~~~h~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vw 875 (1097)
..+. .-..+.+++|++.+..|..+. .+.|+.+++........+...-.....+++...+++++++-...+.|.+.
T Consensus 343 ~~~~---~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~ 419 (619)
T 3s94_A 343 LQLE---DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVT 419 (619)
T ss_dssp CCCS---CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred Eecc---ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEE
Confidence 1111 234578899998777776665 68899999876444333433335677899987345555555567899999
Q ss_pred EcccceEEEEecccccCeEEEEEecCCCEEEEEeC--CCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCc
Q 001336 876 NVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGA--DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQT 953 (1097)
Q Consensus 876 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 953 (1097)
++........+...-....+|++.|....|+.+.. ...|...+++.... ..+ . .... .....+++++++.
T Consensus 420 ~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~---~~l-~-~~~l---~~P~GlalD~~~~ 491 (619)
T 3s94_A 420 RLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR---VVL-V-NTSL---GWPNGLALDYDEG 491 (619)
T ss_dssp ETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EEE-E-CSSC---SCEEEEEEETTTT
T ss_pred eCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc---EEE-E-eCCC---CCCeeeEEcccCC
Confidence 98754322222333456789999997555554443 35677667665321 111 1 1111 3467899999887
Q ss_pred EEEEE--eCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCC
Q 001336 954 HLLAV--HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL 1015 (1097)
Q Consensus 954 ~l~~~--~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~ 1015 (1097)
.|..+ ..+.|..++++.... ..+.. ..-....++++..+ .+.++-...+.|...+..++
T Consensus 492 ~LY~aD~~~~~I~~~~~dG~~~-~~~~~-~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 492 KIYWGDAKTDKIEVMNTDGTGR-RVLVE-DKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp EEEEEETTTTEEEEEESSSCCC-EEEEE-CCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSC
T ss_pred EEEEEECCCCEEEEEecCCCce-EEEec-cCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCC
Confidence 77775 457899999874433 22221 11112234555443 33333334567777777766
No 228
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.16 E-value=2.1e-08 Score=109.90 Aligned_cols=223 Identities=14% Similarity=0.035 Sum_probs=149.2
Q ss_pred CeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEE
Q 001336 321 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 400 (1097)
Q Consensus 321 ~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 400 (1097)
-..+.+|+|++..++.++..++.|.+||..+++... + .....|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~------~---------------~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV------H---------------ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------E---------------ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE------E---------------ECCCcceEEEEeCCCeEEEEE-
Confidence 346889999988888898889999999998875422 1 123579999999999987765
Q ss_pred CCCEEEEEEccCCeeeeeeeeee-c-ccCcEEEEEEecCCCcEEEEEEeC------CCcEEEEECCCCceeEEeecCCcC
Q 001336 401 SKHIVHLYTYHGGDELRNHLEIE-A-HVGSVNDLAFSYPNKQLSVVTCGE------DRVIKVWDAVTGTKQYIFEGHESP 472 (1097)
Q Consensus 401 ~dg~i~iwd~~~~~~~~~~~~l~-~-h~~~V~~l~~s~d~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~h~~~ 472 (1097)
.+ .|.+||..+++.. ...... + ....+..++++|+|+ ++++... .+.|..+| +++... +..+...
T Consensus 108 ~~-gl~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~ 180 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLT-LHAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISI 180 (326)
T ss_dssp TT-EEEEEETTTCCEE-EEECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESS
T ss_pred CC-CEEEEECCCCcEE-EEeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcc
Confidence 44 4999999887642 221111 1 124689999999998 4554432 24566666 555433 3333345
Q ss_pred eEEEeecccCCccEE-EEEcCCCeEEEEEcC--CC-Cc---ee--eecCCCCceEEEEEccCCCEEEEeeeCCCCCceEE
Q 001336 473 VYSICPHHKENIQFI-FSTATDGKIKAWLYD--NL-GS---RV--DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 543 (1097)
Q Consensus 473 v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~-~~---~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 543 (1097)
...++| +++++.+ ++.+.++.|.+|+++ ++ .. .. .+.........++++++|++.++... ...|.
T Consensus 181 ~~~i~~--s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~ 254 (326)
T 2ghs_A 181 PNSICF--SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVD 254 (326)
T ss_dssp EEEEEE--CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEE
T ss_pred cCCeEE--cCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEE
Confidence 677888 4556655 455667899999986 33 21 11 11222345678999999987776532 23699
Q ss_pred EEeCCCCeeeEEecCCCCcceEEEEEc-CCCCEEEEEe
Q 001336 544 EWNESEGAVKRTYHGLGKRSVGVVQFD-TTKNRFLAAG 580 (1097)
Q Consensus 544 ~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 580 (1097)
.||. +++.+..+..+.. .+.+++|+ ++++.|+.++
T Consensus 255 ~~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp EECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEE
T ss_pred EECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEe
Confidence 9998 5777777765544 68999998 8887776655
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.14 E-value=2.1e-08 Score=120.94 Aligned_cols=192 Identities=14% Similarity=0.106 Sum_probs=129.1
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeecCCcC----------e-EEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeee
Q 001336 442 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESP----------V-YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY 510 (1097)
Q Consensus 442 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~----------v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 510 (1097)
.++.++.++.|..+|..+|+.+-++...... + ..+++ .+..|+.++.|+.|..+|..+++....+
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 4777788899999999999998777543210 0 11222 2357888899999999999999988877
Q ss_pred cCC-C----CceEEEEEccCCCEEEEeeeCCC--CCceEEEEeCCCCeeeEEecCCCCc---------------------
Q 001336 511 DAP-G----HSSTMMAYSADGARLFSCGTNKE--GESYLVEWNESEGAVKRTYHGLGKR--------------------- 562 (1097)
Q Consensus 511 ~~~-~----~~v~~~~~s~~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~~--------------------- 562 (1097)
... . ..+.+.-.- .+..+++++...+ .++.|..+|..+|+.+-.+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 654 2 112111111 2345555443211 2467999999999988776543211
Q ss_pred ----------ceEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceEEEEecCCCC-------C
Q 001336 563 ----------SVGVVQFDTTKNRFLAAGDEF-------------------MIKFWDMDNVNLLASIDADGGL-------Q 606 (1097)
Q Consensus 563 ----------~v~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~ 606 (1097)
....++++++++.++.+..++ .|..+|.++|+.+..++...+. .
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 313 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence 112468889999999887664 5999999999999887653221 1
Q ss_pred CcceEEEcCCC---CEEEEEECCCcEEEEEcCCCc
Q 001336 607 ASPCIRFNKEG---ILLAVSTNDNGIKILANADGI 638 (1097)
Q Consensus 607 ~v~~v~~s~~~---~~l~s~~~dg~i~iw~~~~~~ 638 (1097)
....+....+| ..++.++.+|.++++|..+|.
T Consensus 314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~ 348 (677)
T 1kb0_A 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (677)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 12223333467 688999999999999999993
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.14 E-value=8.4e-09 Score=124.36 Aligned_cols=203 Identities=11% Similarity=0.095 Sum_probs=136.3
Q ss_pred EEEEEeCCCCCEEEEEECCC-------------------cEEEEEcccceEEEEecc--cc-------cCeEEEEEecCC
Q 001336 851 TFLAFHPQDNNIIAIGMEDS-------------------SIQIYNVRVDEVKTKLKG--HQ-------KRITGLAFSNTL 902 (1097)
Q Consensus 851 ~~l~~sp~~~~~la~g~~dg-------------------~v~vwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg 902 (1097)
..++++| ++.+|+++..++ .|..+|..+|+.+..++. |. ....-+....+|
T Consensus 246 ~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG 324 (677)
T 1kb0_A 246 DSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG 324 (677)
T ss_dssp SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred cceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence 3578898 777888887664 499999999998877653 31 122223344577
Q ss_pred ---CEEEEEeCCCcEEEEEcCCCcccceeeEee-c-------CCC-------------------CCCccCCeEEEEcCCC
Q 001336 903 ---NVLVSSGADSQLCVWSTDGWEKQASKFLTI-P-------NGR-------------------TASALADTRVQFHLDQ 952 (1097)
Q Consensus 903 ---~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~-~-------~~~-------------------~~~~~~v~~l~~s~dg 952 (1097)
..++.++.+|.|+++|..+++..-...+.. . .+. ......-..++|+|++
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~ 404 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT 404 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence 689999999999999999988532111000 0 000 0000111367899998
Q ss_pred cEEEEE-eC-------------------------------------------CeEEEEeCCCcceeeeeeccCCCCCEEE
Q 001336 953 THLLAV-HE-------------------------------------------TQIAIYEAPKLECLKQFVPREASGPITH 988 (1097)
Q Consensus 953 ~~l~~~-~d-------------------------------------------~~v~vwd~~~~~~~~~~~~~~h~~~v~~ 988 (1097)
.++++. .+ +.|..||+.+++.+-.+.. ..++..
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~ 481 (677)
T 1kb0_A 405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWNG 481 (677)
T ss_dssp TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCCC
T ss_pred CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---CCCCcC
Confidence 888773 21 7899999999998877753 334555
Q ss_pred EEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCC-EEEEEec------------
Q 001336 989 ATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPN-QFALGLT------------ 1055 (1097)
Q Consensus 989 v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~-~l~s~~~------------ 1055 (1097)
..++.++.++++++.||.+++||..+++.+.++.... + ....++ .|.+ +++ ++++.+.
T Consensus 482 g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~----~--~~~~p~--~y~~-~G~~~v~~~~G~~~~~~~~~~~~ 552 (677)
T 1kb0_A 482 GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT----G--VVAAPS--TYMV-DGRQYVSVAVGWGGVYGLAARAT 552 (677)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS----C--CCSCCE--EEEE-TTEEEEEEEECCCHHHHHHCCSC
T ss_pred cceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC----C--cccCCE--EEEe-CCEEEEEEeccCCcccccccccc
Confidence 6678888899999999999999999999998887432 2 112234 5555 454 4444333
Q ss_pred ----CCcEEEEecCC
Q 001336 1056 ----DGGVYIIEPLE 1066 (1097)
Q Consensus 1056 ----Dg~v~~W~~~~ 1066 (1097)
.+.+..|.+..
T Consensus 553 ~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 553 ERQGPGTVYTFVVGG 567 (677)
T ss_dssp SCCCCCEEEEEEETC
T ss_pred ccCCCCeEEEEeccc
Confidence 46899999874
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.13 E-value=9.4e-09 Score=124.24 Aligned_cols=327 Identities=10% Similarity=0.055 Sum_probs=186.2
Q ss_pred cEEEEEcCCCeEEEEEcCCCCceeeecCCCCc----------e-EEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeee
Q 001336 485 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHS----------S-TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 553 (1097)
Q Consensus 485 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------v-~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 553 (1097)
..++.++.++.|..+|..+++.+..+...... + ..+++ .+..+++++. +..|..+|..+|+.+
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~----dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVL----DGRLEAIDAKTGQRA 144 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEcc----CCEEEEEECCCCCEe
Confidence 46677777788888888888887776543221 0 11222 3456666653 447999999999988
Q ss_pred EEecCC-CCcceEEEEEcC---CCCEEEEEe------CCCcEEEEECCCCceEEEEecCCCC------------------
Q 001336 554 RTYHGL-GKRSVGVVQFDT---TKNRFLAAG------DEFMIKFWDMDNVNLLASIDADGGL------------------ 605 (1097)
Q Consensus 554 ~~~~~~-~~~~v~~~~~~~---~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~------------------ 605 (1097)
-.+... .......+..+| ++ .+++++ .+|.|+.||..+|+.+-.+....+.
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWF 223 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCC
T ss_pred eeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccC
Confidence 776553 110101111111 33 455543 3789999999999998877531100
Q ss_pred -----------CCcceEEEcCCCCEEEEEECCCc-------------------EEEEEcCCCceEEEEeccccccccccc
Q 001336 606 -----------QASPCIRFNKEGILLAVSTNDNG-------------------IKILANADGIRLLRTVESRTFDASRVA 655 (1097)
Q Consensus 606 -----------~~v~~v~~s~~~~~l~s~~~dg~-------------------i~iw~~~~~~~~~~~~~~~~~~~~~~~ 655 (1097)
.....++++|++.+++.++.++. |..||..+|. ..-.++....
T Consensus 224 g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~-~~W~~~~~~~------ 296 (689)
T 1yiq_A 224 GDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGE-YVWHYQTTPG------ 296 (689)
T ss_dssp SSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCC-EEEEEESSTT------
T ss_pred CceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCc-eeEeeecCCc------
Confidence 11125788888888888877754 6677776663 2222221000
Q ss_pred ccccccCCcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCC
Q 001336 656 SAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPD 735 (1097)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 735 (1097)
..|+..
T Consensus 297 -----------------------------------------------------------d~wd~~--------------- 302 (689)
T 1yiq_A 297 -----------------------------------------------------------DAWDYT--------------- 302 (689)
T ss_dssp -----------------------------------------------------------CCSCCC---------------
T ss_pred -----------------------------------------------------------cccccc---------------
Confidence 011111
Q ss_pred CcCccceEEEEEccCCc---eeeeeccCcEEEEeccCCCCCCccCccccccCCcccC----CCCCccc------------
Q 001336 736 NLTAMRVSRLIYTNSGL---AILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQ----PPSGILM------------ 796 (1097)
Q Consensus 736 ~~~~~~i~~l~~spdg~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~----~~~~~~~------------ 796 (1097)
....+.-.....+|+ .++.++.+|.+.++|..+++..-...... .-|. ..++..+
T Consensus 303 --~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~----~~w~~~~~~~~~~pi~~~~~~~~~~~~ 376 (689)
T 1yiq_A 303 --ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVP----QSWTKGMDMKTGRPILDEENAAYWKNG 376 (689)
T ss_dssp --CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC----CSSEEEEETTTTEEEECHHHHCTTTSS
T ss_pred --CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccc----cccccccCccCCCcccchhhccccCCC
Confidence 001111111222454 67778888888888876553210000000 0010 0011000
Q ss_pred --cccCCCCCCCCCeeEEEEccCCCEEEEEe----------------------------------------------CCe
Q 001336 797 --TNDISDTNPEDAVPCFALSKNDSYVMSAS----------------------------------------------GGK 828 (1097)
Q Consensus 797 --~~~~~~~~h~~~v~~l~~s~dg~~la~~s----------------------------------------------dg~ 828 (1097)
....++..-...-..++|+|+..++++.. +|.
T Consensus 377 ~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~ 456 (689)
T 1yiq_A 377 KRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGK 456 (689)
T ss_dssp SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEE
T ss_pred CeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCccee
Confidence 00011100011223478999888777652 267
Q ss_pred EEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCe-EEEEEecCCCEEEE
Q 001336 829 ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRI-TGLAFSNTLNVLVS 907 (1097)
Q Consensus 829 i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~~l~s 907 (1097)
|..||+.+++.+..+..+.. +..-.++. .+.++++|+.||.++.||..+|+.+.+++...+.+ .-+.|+.||+..+.
T Consensus 457 l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 457 LIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp EEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEEECCCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 99999999999888764432 33335555 56799999999999999999999998887553322 44677888875443
No 232
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.12 E-value=1.6e-08 Score=109.73 Aligned_cols=233 Identities=14% Similarity=0.101 Sum_probs=152.7
Q ss_pred CCCCCeEEEEEccCCC-EEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEEC
Q 001336 379 DYTASVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 457 (1097)
Q Consensus 379 ~h~~~V~~v~~spd~~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~ 457 (1097)
.........+|+|+|+ +++++..++.|..|+. +++ .. .+..+...+..++++++|+ ++++...++.|.+||.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDA 114 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECT
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECC
Confidence 3445678899999999 5566667889999998 444 22 2444667799999999998 5665556688999997
Q ss_pred CCCceeEEeecC-----CcCeEEEeecccCCccEEEE----EcC-------------CCeEEEEEcCCCCceeeecCCCC
Q 001336 458 VTGTKQYIFEGH-----ESPVYSICPHHKENIQFIFS----TAT-------------DGKIKAWLYDNLGSRVDYDAPGH 515 (1097)
Q Consensus 458 ~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~ 515 (1097)
. ++... +..+ ...++++++ +++|.++++ |.. .+.|..||.++++..... ...
T Consensus 115 ~-g~~~~-~~~~~~~~~~~~~~~i~~--d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~ 188 (305)
T 3dr2_A 115 D-GQAHL-LVGRYAGKRLNSPNDLIV--ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD 188 (305)
T ss_dssp T-SCEEE-EECEETTEECSCCCCEEE--CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred C-CCEEE-EEeccCCCccCCCCCEEE--CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence 5 65332 2211 133566777 567777776 332 245666766555443332 334
Q ss_pred ceEEEEEccCCCEEEEeeeCC--CCCceEEEEeCCCCee--eEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001336 516 SSTMMAYSADGARLFSCGTNK--EGESYLVEWNESEGAV--KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 591 (1097)
Q Consensus 516 ~v~~~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 591 (1097)
....++|+|+++.|+.+.... .+...|..|++..+.. ...+..........+++.++|++.+ +..+ .|.+|+.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~- 265 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDS- 265 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EEEEECT-
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cEEEECC-
Confidence 567899999999887765321 0124799999875531 1122111122445688999998544 4444 4999998
Q ss_pred CCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001336 592 NVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK 630 (1097)
Q Consensus 592 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~ 630 (1097)
.++.+..+..+. .+.+++|+++++.|+.++.++..+
T Consensus 266 ~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 266 DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 577777776542 478999999998888888764433
No 233
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.11 E-value=2.8e-09 Score=116.84 Aligned_cols=269 Identities=9% Similarity=-0.026 Sum_probs=172.0
Q ss_pred CeEEEEEeCCC----eEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEE-------
Q 001336 332 QILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY------- 400 (1097)
Q Consensus 332 ~~lla~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~------- 400 (1097)
.+++++-..++ .|.+.|..+++.+.+. -.+. .+ .+++|||+++++++.
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i------------------~vG~-~P--~i~~spDg~~lyVan~~~~r~~ 90 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHS------------------LGAF-LS--LAVAGHSGSDFALASTSFARSA 90 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEE------------------EECT-TC--EEEECTTSSCEEEEEEEETTTT
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEEE------------------eCCC-CC--ceEECCCCCEEEEEcccccccc
Confidence 44556666555 8889999999887642 1233 24 799999999999886
Q ss_pred ---CCCEEEEEEccCCeeeeeeeeeecc-----cCcEEEEEEecCCCcEEEEEEeC--CCcEEE--EECCCCceeEEeec
Q 001336 401 ---SKHIVHLYTYHGGDELRNHLEIEAH-----VGSVNDLAFSYPNKQLSVVTCGE--DRVIKV--WDAVTGTKQYIFEG 468 (1097)
Q Consensus 401 ---~dg~i~iwd~~~~~~~~~~~~l~~h-----~~~V~~l~~s~d~~~~~l~s~s~--d~~i~i--wd~~~~~~~~~~~~ 468 (1097)
.++.|.+||..+++.+..+. +.+. ......++|+|||++ ++.+.. +..|.+ +|+.+ +.++.-
T Consensus 91 ~G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v 164 (368)
T 1mda_H 91 KGKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKS 164 (368)
T ss_dssp SSSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEEC
T ss_pred cCCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEEC
Confidence 36889999999998766432 2100 123457899999994 555543 467888 99877 444432
Q ss_pred CCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCC----CCcee-----eecCCCCceEEEEEccCCCEEEEeeeCCCCC
Q 001336 469 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN----LGSRV-----DYDAPGHSSTMMAYSADGARLFSCGTNKEGE 539 (1097)
Q Consensus 469 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 539 (1097)
- +. ..+.+.+. ..+++.+.||.+.+.++++ ..... .+.....+. . ++++..++..+.
T Consensus 165 ~-~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~----- 230 (368)
T 1mda_H 165 A-SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA----- 230 (368)
T ss_dssp S-SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----
T ss_pred C-Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----
Confidence 1 11 12223333 3455667788888888875 22111 011112232 3 566666665543
Q ss_pred ceEEEEeCCCC--eeeEEecCCC------C---cceEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCceEEEE
Q 001336 540 SYLVEWNESEG--AVKRTYHGLG------K---RSVGVVQFDTTKNRFLAAGD---------EFMIKFWDMDNVNLLASI 599 (1097)
Q Consensus 540 ~~i~~wd~~~~--~~~~~~~~~~------~---~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~ 599 (1097)
+.+.+.|.... +.+..+.... . .....+.++|+++.++.+.. ++.+.++|+.+++.+..+
T Consensus 231 ~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i 310 (368)
T 1mda_H 231 SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI 310 (368)
T ss_dssp SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC
T ss_pred CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEE
Confidence 25888888653 2333222110 0 01122689999998887643 235669999999999888
Q ss_pred ecCCCCCCcceEEEcCCCC-EEEEEE-CCCcEEEEEcCCCceEEEEec
Q 001336 600 DADGGLQASPCIRFNKEGI-LLAVST-NDNGIKILANADGIRLLRTVE 645 (1097)
Q Consensus 600 ~~~~~~~~v~~v~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~~~~~~~ 645 (1097)
.... ....++|+|||+ ++++.. .++.|.++|+.++ +.++.+.
T Consensus 311 ~vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~ 354 (368)
T 1mda_H 311 SNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp EEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred ECCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEE
Confidence 6532 467999999997 556666 5899999999998 6666664
No 234
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.11 E-value=1.4e-08 Score=122.62 Aligned_cols=169 Identities=15% Similarity=0.126 Sum_probs=117.2
Q ss_pred EEEEeCCCCCEEEEEECCCc-------------------EEEEEcccceEEEEecc--cc-------cCeEEEEEecCCC
Q 001336 852 FLAFHPQDNNIIAIGMEDSS-------------------IQIYNVRVDEVKTKLKG--HQ-------KRITGLAFSNTLN 903 (1097)
Q Consensus 852 ~l~~sp~~~~~la~g~~dg~-------------------v~vwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg~ 903 (1097)
.++++| +..+++++..++. |..+|..+|+.+..++. |. .++.-.....+|+
T Consensus 239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 578998 7788888888764 99999999999877754 21 1222223333665
Q ss_pred ---EEEEEeCCCcEEEEEcCCCcccceeeEee------------------------cCCC-------CCCccCCeEEEEc
Q 001336 904 ---VLVSSGADSQLCVWSTDGWEKQASKFLTI------------------------PNGR-------TASALADTRVQFH 949 (1097)
Q Consensus 904 ---~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~------------------------~~~~-------~~~~~~v~~l~~s 949 (1097)
.++.++.+|.++++|..+++..-...+.. ..+. ......-..++|+
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78899999999999999988541110000 0000 0000112347899
Q ss_pred CCCcEEEEE-e---------------------------------------------CCeEEEEeCCCcceeeeeeccCCC
Q 001336 950 LDQTHLLAV-H---------------------------------------------ETQIAIYEAPKLECLKQFVPREAS 983 (1097)
Q Consensus 950 ~dg~~l~~~-~---------------------------------------------d~~v~vwd~~~~~~~~~~~~~~h~ 983 (1097)
|+..++++. . ++.|..||+.+++.+-.+...
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--- 474 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV--- 474 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES---
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC---
Confidence 988877763 1 377999999999988776532
Q ss_pred CCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCC
Q 001336 984 GPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPT 1024 (1097)
Q Consensus 984 ~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~ 1024 (1097)
.++....++..+.++++++.||.++.||.++|+.+.++...
T Consensus 475 ~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 475 TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 23344467778889999999999999999999999887633
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.09 E-value=2e-08 Score=109.82 Aligned_cols=238 Identities=13% Similarity=0.098 Sum_probs=154.0
Q ss_pred cCCceeeeecc-CcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe-C
Q 001336 749 NSGLAILALAS-NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-G 826 (1097)
Q Consensus 749 pdg~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-d 826 (1097)
+++++|++.+. ++.|.++|+....+.+.-... ++..++.. -. .......+.++|+| +++++. +
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~---------ie~~~~~~--~~---g~s~Ph~~~~~pdG-i~Vs~~g~ 157 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKV---------IEPEEVKK--VS---GYSRLHTVHCGPDA-IYISALGN 157 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEE---------ECHHHHHH--HH---CEEEEEEEEECSSC-EEEEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeee---------echhhccc--cc---CCCcccceeECCCe-EEEEcCCC
Confidence 67777766554 788999987643221111000 00000000 00 01234567889999 666554 4
Q ss_pred ------CeEEEEEcCCCceeEEeCCCCCC---eEEEEEeCCCCCEEEEEE-------------------CCCcEEEEEcc
Q 001336 827 ------GKISLFNMMTFKTMTTFMPPPPA---ATFLAFHPQDNNIIAIGM-------------------EDSSIQIYNVR 878 (1097)
Q Consensus 827 ------g~i~iwd~~~~~~~~~~~~~~~~---i~~l~~sp~~~~~la~g~-------------------~dg~v~vwd~~ 878 (1097)
|.|.++|.++++.+.++...... -..+.|+| +++.+++.. .+.+|.+||+.
T Consensus 158 ~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~ 236 (462)
T 2ece_A 158 EEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR 236 (462)
T ss_dssp TTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT
T ss_pred cCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC
Confidence 68999999999999998633222 34578899 888888774 36899999999
Q ss_pred cceEEEEeccc-c-cCeEEEEE--ecCCCEEEEEe------CCCcEEEEEcCCCcccceeeEeecCCCCC----------
Q 001336 879 VDEVKTKLKGH-Q-KRITGLAF--SNTLNVLVSSG------ADSQLCVWSTDGWEKQASKFLTIPNGRTA---------- 938 (1097)
Q Consensus 879 ~~~~~~~l~~h-~-~~V~~l~~--s~dg~~l~s~~------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~---------- 938 (1097)
+++.+.++..- . .....+.| +|++++++.++ .+++|.+|..+.++......+.+......
T Consensus 237 ~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f 316 (462)
T 2ece_A 237 KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPF 316 (462)
T ss_dssp TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGG
T ss_pred CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccc
Confidence 99888877642 1 23455656 99999988777 45688888776654333333322221000
Q ss_pred --CccCCeEEEEcCCCcEEEEE--eCCeEEEEeCC---CcceeeeeeccCC------------CCCEEEEEEecCCCEEE
Q 001336 939 --SALADTRVQFHLDQTHLLAV--HETQIAIYEAP---KLECLKQFVPREA------------SGPITHATYSCDSQSIY 999 (1097)
Q Consensus 939 --~~~~v~~l~~s~dg~~l~~~--~d~~v~vwd~~---~~~~~~~~~~~~h------------~~~v~~v~~s~dg~~l~ 999 (1097)
.......+.+|+||++|.++ ..+.|.+||+. +.+.+..+...|. .+.-..+++|+||++|+
T Consensus 317 ~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~Ly 396 (462)
T 2ece_A 317 KAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVY 396 (462)
T ss_dssp TEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEE
T ss_pred ccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEE
Confidence 01347889999999999996 56899999986 2355555554321 01357899999999999
Q ss_pred EEe
Q 001336 1000 VAF 1002 (1097)
Q Consensus 1000 s~s 1002 (1097)
++.
T Consensus 397 VaN 399 (462)
T 2ece_A 397 VTN 399 (462)
T ss_dssp EEC
T ss_pred EEc
Confidence 888
No 236
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.08 E-value=3.2e-07 Score=102.92 Aligned_cols=149 Identities=13% Similarity=0.045 Sum_probs=98.7
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeecC---------CcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecC
Q 001336 442 SVVTCGEDRVIKVWDAVTGTKQYIFEGH---------ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA 512 (1097)
Q Consensus 442 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h---------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 512 (1097)
.++.++.++.|..+|..+|+.+..+... ...+.+.. ..++..++.++.++.|..+|.++++.......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV---TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE---EEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc---eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 5788888999999999999988666542 12232221 11235788888899999999999888777655
Q ss_pred CCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcc----eEEEEEcCCCCEEEEEeCCCcEEEE
Q 001336 513 PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS----VGVVQFDTTKNRFLAAGDEFMIKFW 588 (1097)
Q Consensus 513 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~iw 588 (1097)
........... + ..+++++. +..|..+|..+++.+..+....... ....... +..++.++.++.|..+
T Consensus 132 ~~~~~~~p~~~-~-~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~ 203 (376)
T 3q7m_A 132 AGEALSRPVVS-D-GLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV 203 (376)
T ss_dssp SSCCCSCCEEE-T-TEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred CCceEcCCEEE-C-CEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence 43322222222 3 35555543 4479999999998887765532200 0111222 4578888889999999
Q ss_pred ECCCCceEEEEec
Q 001336 589 DMDNVNLLASIDA 601 (1097)
Q Consensus 589 d~~~~~~~~~~~~ 601 (1097)
|..+|+.+.....
T Consensus 204 d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 204 LMEQGQMIWQQRI 216 (376)
T ss_dssp ETTTCCEEEEEEC
T ss_pred ECCCCcEEEEEec
Confidence 9999998877654
No 237
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.02 E-value=3e-07 Score=103.21 Aligned_cols=224 Identities=8% Similarity=0.018 Sum_probs=141.9
Q ss_pred CCCEEEEEECCCEEEEEEccCCeeeeeeeeeecc-------cCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001336 392 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAH-------VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY 464 (1097)
Q Consensus 392 d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h-------~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~ 464 (1097)
++..|.+++.++.|..+|..+|+.+-... +... ...+.+.-.. ++. .++.++.++.|..+|..+|+.+.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~-~~~--~v~v~~~~g~l~a~d~~tG~~~W 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVS-LAEKDGWFSKEPALLSGGVTV-SGG--HVYIGSEKAQVYALNTSDGTVAW 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEE-CCC---CCSCCCCCEEEEEEE-ETT--EEEEEETTSEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeec-CccccccccccCcccccCceE-eCC--EEEEEcCCCEEEEEECCCCCEEE
Confidence 46778888889999999999998654322 2111 2233322222 344 57888899999999999999887
Q ss_pred EeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCce-----EEEEEccCCCEEEEeeeCCCCC
Q 001336 465 IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSS-----TMMAYSADGARLFSCGTNKEGE 539 (1097)
Q Consensus 465 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~~~~~~ 539 (1097)
.............+ . +..++.++.++.|..+|..+++............ ...... +..++++.. +
T Consensus 128 ~~~~~~~~~~~p~~--~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~----~ 197 (376)
T 3q7m_A 128 QTKVAGEALSRPVV--S--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGD----N 197 (376)
T ss_dssp EEECSSCCCSCCEE--E--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCT----T
T ss_pred EEeCCCceEcCCEE--E--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcC----C
Confidence 66544322111122 1 2478888899999999999888877765533211 122222 345555543 4
Q ss_pred ceEEEEeCCCCeeeEEecCCCCcc---------e-EEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcc
Q 001336 540 SYLVEWNESEGAVKRTYHGLGKRS---------V-GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASP 609 (1097)
Q Consensus 540 ~~i~~wd~~~~~~~~~~~~~~~~~---------v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 609 (1097)
..+..+|..+++.+.......... + ..... .+..++.++.++.+..+|..+|+.+...... ...
T Consensus 198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~----~~~ 271 (376)
T 3q7m_A 198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKRELG----SVN 271 (376)
T ss_dssp TEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECCC----CEE
T ss_pred CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccCC----CCC
Confidence 469999999998876665321100 0 00111 2467888888899999999999887766432 223
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 610 CIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 610 ~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
.+.. ++..++.++.++.+..+|..++
T Consensus 272 ~~~~--~~~~l~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 272 DFIV--DGNRIYLVDQNDRVMALTIDGG 297 (376)
T ss_dssp EEEE--ETTEEEEEETTCCEEEEETTTC
T ss_pred CceE--ECCEEEEEcCCCeEEEEECCCC
Confidence 3333 3567777788888888887776
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.99 E-value=1e-07 Score=104.39 Aligned_cols=266 Identities=14% Similarity=0.160 Sum_probs=167.7
Q ss_pred CcceeecCC---CCceEEEEee--c-CCCeeEEEE-----------c--cCCCeEEEEEeCCCeEEEEEcCCCceeeeee
Q 001336 299 GQSSYSTDD---LPKTVVMTLN--Q-GSAVKSMDF-----------H--PVQQILLVVGTNMGDVMLWEVGSRERIAVKS 359 (1097)
Q Consensus 299 ~~~~~~~~~---~~~~~~~~~~--h-~~~V~~v~f-----------s--pdg~~lla~gs~dg~i~iwd~~~~~~~~~~~ 359 (1097)
.|++.+.+. ...+.+..+. + ..+.....| + +++++|++.|..++.|.|.|+.+..... +-
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p-~~ 122 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREP-KI 122 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSC-EE
T ss_pred eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCc-ee
Confidence 366666553 2356666665 2 234455555 7 8999999999999999999997552110 11
Q ss_pred eeEeeccccCccccccccCCC-CCCeEEEEEccCCCEEEEEECC------CEEEEEEccCCeeeeeeeeeecccC-cEEE
Q 001336 360 FKVWELGACSMPLQASLSSDY-TASVNRVMWSPDGTLFGVAYSK------HIVHLYTYHGGDELRNHLEIEAHVG-SVND 431 (1097)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~spd~~~las~~~d------g~i~iwd~~~~~~~~~~~~l~~h~~-~V~~ 431 (1097)
.++.+. ..+.... ...-..+..+|+| .++++..+ |.|.+.|..+++.+.... ..+... --..
T Consensus 123 ~k~ie~--------~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd 192 (462)
T 2ece_A 123 IKVIEP--------EEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYD 192 (462)
T ss_dssp EEEECH--------HHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCC
T ss_pred eeeech--------hhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccce
Confidence 111110 0001011 1234567888999 66666554 789999999988665432 222222 2335
Q ss_pred EEEecCCCcEEEEEEe-------------------CCCcEEEEECCCCceeEEeecC--CcCeEEEeecccCCccEEEEE
Q 001336 432 LAFSYPNKQLSVVTCG-------------------EDRVIKVWDAVTGTKQYIFEGH--ESPVYSICPHHKENIQFIFST 490 (1097)
Q Consensus 432 l~~s~d~~~~~l~s~s-------------------~d~~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~ 490 (1097)
+.|+|+++ .+++.. .+.+|.+||+.+++.+.++.-- ......+.|.+++++++++.+
T Consensus 193 ~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~ 270 (462)
T 2ece_A 193 FWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFIN 270 (462)
T ss_dssp EEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEE
T ss_pred EEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEE
Confidence 88899999 677764 4789999999999888877642 123445666567777877766
Q ss_pred c------CCCeEEEEEcCCCCceee----ecC-------C---------CCceEEEEEccCCCEEEEeeeCCCCCceEEE
Q 001336 491 A------TDGKIKAWLYDNLGSRVD----YDA-------P---------GHSSTMMAYSADGARLFSCGTNKEGESYLVE 544 (1097)
Q Consensus 491 ~------~dg~i~iwd~~~~~~~~~----~~~-------~---------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 544 (1097)
+ .+++|.+|..+.+..... +.. . ......+.+|+||++|.++.. +...|.+
T Consensus 271 ~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~Vav 347 (462)
T 2ece_A 271 MVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQ 347 (462)
T ss_dssp EEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET---TTTEEEE
T ss_pred EeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC---CCCEEEE
Confidence 6 567888776654211100 000 0 235678999999999998864 3557999
Q ss_pred EeCCC---CeeeEEecCCCC-------------cceEEEEEcCCCCEEEEEe
Q 001336 545 WNESE---GAVKRTYHGLGK-------------RSVGVVQFDTTKNRFLAAG 580 (1097)
Q Consensus 545 wd~~~---~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~~~~ 580 (1097)
||+.. .+.+..+..... ..-..+.++|+|++|+++.
T Consensus 348 fdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 348 YDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99853 355554433210 0246789999999999887
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.95 E-value=3.9e-08 Score=108.16 Aligned_cols=180 Identities=9% Similarity=0.087 Sum_probs=107.8
Q ss_pred EEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeec
Q 001336 432 LAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD 511 (1097)
Q Consensus 432 l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 511 (1097)
.....++. +..++.++.|..|| .+++.+..+..+...+.++.. ..+| .|..++.+ |..+|. +++......
T Consensus 25 ~~~d~~g~---l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~--~~~g-~l~v~t~~--l~~~d~-~g~~~~~~~ 94 (330)
T 3hxj_A 25 PILAKNGT---IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSI--GKDG-TIYFGSDK--VYAINP-DGTEKWRFD 94 (330)
T ss_dssp CEECTTSC---EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEE--TTTT-EECCSSCE--EEEECC-CGGGGGGSC
T ss_pred ceEccCCe---EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEE--ecCC-cEEEecCc--EEEECC-CCcEEEEEE
Confidence 34445665 67778889999999 888877655544444555554 4444 45555554 878875 344433333
Q ss_pred CCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001336 512 APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 591 (1097)
Q Consensus 512 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 591 (1097)
..........+. +..+.+++. +..|..+|.. ++....+..... .+.++...+++. ++.++.++.|..||..
T Consensus 95 ~~~~~~~~~~~~--~~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~~~~g~-l~vgt~~~~l~~~d~~ 165 (330)
T 3hxj_A 95 TKKAIVSDFTIF--EDILYVTSM----DGHLYAINTD-GTEKWRFKTKKA-IYATPIVSEDGT-IYVGSNDNYLYAINPD 165 (330)
T ss_dssp C-----CCEEEE--TTEEEEECT----TSEEEEECTT-SCEEEEEECSSC-CCSCCEECTTSC-EEEECTTSEEEEECTT
T ss_pred CCCCcccCceEE--CCEEEEEec----CCEEEEEcCC-CCEEEEEcCCCc-eeeeeEEcCCCE-EEEEcCCCEEEEECCC
Confidence 222222233333 444555543 3368899988 766655554433 455566666665 6667778999999998
Q ss_pred CCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 592 NVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 592 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
++.+...... ...+.++...+++.+.+ ++ +.|..++ .++
T Consensus 166 -g~~~~~~~~~--~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g 204 (330)
T 3hxj_A 166 -GTEKWRFKTN--DAITSAASIGKDGTIYF-GS--DKVYAIN-PDG 204 (330)
T ss_dssp -SCEEEEEECS--SCCCSCCEECTTCCEEE-ES--SSEEEEC-TTS
T ss_pred -CCEeEEEecC--CCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCC
Confidence 8777766643 33566777766666444 33 6677776 443
No 240
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.93 E-value=3.3e-08 Score=112.20 Aligned_cols=244 Identities=9% Similarity=0.035 Sum_probs=164.1
Q ss_pred EEEEcc-----CCCEEEEEe--CCeEEEEEcCCCceeEEeCCC-CCCeEEEEE-e-CCCCCEEEEEE-------------
Q 001336 811 CFALSK-----NDSYVMSAS--GGKISLFNMMTFKTMTTFMPP-PPAATFLAF-H-PQDNNIIAIGM------------- 867 (1097)
Q Consensus 811 ~l~~s~-----dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~-s-p~~~~~la~g~------------- 867 (1097)
..++|. ||+++.+.. ++.|.+.|+++.++...+.-. ...+..+++ + | +++++++++
T Consensus 89 h~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l 167 (595)
T 1fwx_A 89 HVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNM 167 (595)
T ss_dssp CEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSST
T ss_pred ccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCccc
Confidence 355665 999999887 567999999999988865433 356888898 5 8 888888884
Q ss_pred -----CCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCC------------------------------
Q 001336 868 -----EDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS------------------------------ 912 (1097)
Q Consensus 868 -----~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg------------------------------ 912 (1097)
.++.+.+.|..+.+.+.++.--. .-..++++|||+++++++.+.
T Consensus 168 ~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 168 EDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp TCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred ccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence 24579999999998887776322 346688999999999988654
Q ss_pred --------cEEEEEcCCCcccc-eeeEeecCCCCCCccCCeEEEEcCCCcEEEEE--eCCeEEEEeCCCcc---------
Q 001336 913 --------QLCVWSTDGWEKQA-SKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLE--------- 972 (1097)
Q Consensus 913 --------~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~--~d~~v~vwd~~~~~--------- 972 (1097)
.|.+.|..+.+... ...+.+ + ....++.++|||++++++ .+.+|.++|+++.+
T Consensus 247 ~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv--g-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~ 319 (595)
T 1fwx_A 247 AGDYQELNGVKVVDGRKEASSLFTRYIPI--A-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP 319 (595)
T ss_dssp HTCSEEETTEEEEECSGGGCCSSEEEEEE--E-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG
T ss_pred CCCeeEECcEEEEeCcccCCceeEEEEec--C-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCc
Confidence 35555555411001 112222 2 235679999999999996 67899999999764
Q ss_pred ---eeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCC----------CceeeeeCCCCcCCCCCCCceeeEE
Q 001336 973 ---CLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAST----------LRLRCRINPTAYLPTNPSLRVYPLV 1039 (1097)
Q Consensus 973 ---~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~----------~~~~~~~~~~~~~~~~h~~~v~~l~ 1039 (1097)
....... ......++|++||...++.-.|++|.+||+++ .+.+.++... +.| ||.. .++.
T Consensus 320 ~~~v~~~v~v---G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqp-Gh~~--~~~g 392 (595)
T 1fwx_A 320 RSAVVAEPEL---GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQP-GHLK--TVMG 392 (595)
T ss_dssp GGGEEECCBC---CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCE-EEEE--ETTT
T ss_pred ccceEEEcCC---CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-ccc-ccce--eccc
Confidence 2333332 46789999999995455666799999999987 3444444422 111 1111 1112
Q ss_pred EEEcCCCCCEEEEEec---CCc----------EEEEecCCCCccc
Q 001336 1040 IAGNPTDPNQFALGLT---DGG----------VYIIEPLEAEGRW 1071 (1097)
Q Consensus 1040 i~~~p~~~~~l~s~~~---Dg~----------v~~W~~~~~~~~~ 1071 (1097)
+..+| ||++|++... |.- -.++|++.++++.
T Consensus 393 ~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~l 436 (595)
T 1fwx_A 393 ETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVL 436 (595)
T ss_dssp TSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred eEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEE
Confidence 24467 6888887654 432 1788997666543
No 241
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.93 E-value=0.00033 Score=82.85 Aligned_cols=455 Identities=9% Similarity=-0.017 Sum_probs=235.3
Q ss_pred CCCCeEEEEEccCCCEEEEEEC-CCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECC
Q 001336 380 YTASVNRVMWSPDGTLFGVAYS-KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 458 (1097)
Q Consensus 380 h~~~V~~v~~spd~~~las~~~-dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~ 458 (1097)
.-..+..++|++.+..|..+.. .+.|..+++........ .+..--.....+++.+.+.. ++++-...+.|.+.++.
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~--v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~d 114 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLD 114 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE--EECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE--EEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECC
Confidence 3456889999997777766654 67888888876431111 12222356889999987664 55666677899999976
Q ss_pred CCceeEEeecCCcCeEEEeecccCCccEEEEE-cCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCC
Q 001336 459 TGTKQYIFEGHESPVYSICPHHKENIQFIFST-ATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE 537 (1097)
Q Consensus 459 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 537 (1097)
.......+...-.....|++.+.. |.++++- +..+.|...+++.................+++++++..|..+-.
T Consensus 115 G~~~~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~--- 190 (619)
T 3s94_A 115 GSLRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA--- 190 (619)
T ss_dssp SCSCEEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEET---
T ss_pred CCCEEEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeC---
Confidence 543322332334445677775432 3334443 22467777777654444444334457789999998887777642
Q ss_pred CCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCcceEEE-cC
Q 001336 538 GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRF-NK 615 (1097)
Q Consensus 538 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-s~ 615 (1097)
....|...|+..........+... ....+++..+ .++.+. ..+.|...|..+++....+... ......+.+ ++
T Consensus 191 ~~~~I~~~~~dG~~~~~~~~~~~~-~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~--~~~p~~i~v~~~ 265 (619)
T 3s94_A 191 KLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIHSD--IFSPMDIHAFSQ 265 (619)
T ss_dssp TTCCEEEESSSCCEEC----------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECCSC--CCCCSEEEECCG
T ss_pred CCCeEEEecCCCCccEEEEeCCCC-CceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEecC--CCCCcEEEEEcc
Confidence 245688888875443333222221 2345666544 555554 7788999998888766655422 112223332 22
Q ss_pred CCCEEEEEECC--------CcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCcccccccccccccccc
Q 001336 616 EGILLAVSTND--------NGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAA 687 (1097)
Q Consensus 616 ~~~~l~s~~~d--------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1097)
..+-. +... ..+.+-..... ... +..+.|-
T Consensus 266 ~~qp~--~~n~C~~~ng~Cs~lCl~~~~~~----------~~~-------------C~C~~g~----------------- 303 (619)
T 3s94_A 266 QRQPN--ATNPCGIDNGGCSHLCLMSPVKP----------FYQ-------------CACPTGV----------------- 303 (619)
T ss_dssp GGSCC--CCCTTTTTGGGCSSEEEECSSTT----------SEE-------------EECCTTC-----------------
T ss_pred ccCCC--ccccccCCCCcccceEECCCCCC----------Cce-------------EeCCchh-----------------
Confidence 11000 0000 00100000000 000 0000000
Q ss_pred ccccCCCCCCCcc--ccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceee-eeccCcEEE
Q 001336 688 AMVGMSNDSRNFT--DVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAIL-ALASNAVHK 764 (1097)
Q Consensus 688 ~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~-~~~~dg~i~ 764 (1097)
.+..++.... ....++.+ ..+.|+..++....... +.++.. .-..+.+++|.+.+..|. +-...+.|.
T Consensus 304 ---~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~----~~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~ 374 (619)
T 3s94_A 304 ---KLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTD----IVLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIR 374 (619)
T ss_dssp ---CBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCC----EECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred ---eecccCcccCCCCceEEEEE-cccceEEEecCCCccce----eEEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEE
Confidence 0001111000 01122222 22445544444322111 111111 234577899998554444 444567777
Q ss_pred EeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEcCCCceeEE
Q 001336 765 LWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTT 842 (1097)
Q Consensus 765 vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~ 842 (1097)
.+++... ..... +.. .-.....+++...+..|..+. .+.|.+.++........
T Consensus 375 r~~~~g~----------------------~~~~v-~~~--~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l 429 (619)
T 3s94_A 375 RSFIDGS----------------------GSQFV-VTA--QIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKIL 429 (619)
T ss_dssp EEETTSC----------------------SCEEE-ECS--SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred EEEcCCC----------------------ccEEE-EEC--CCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEE
Confidence 7655421 00000 110 224567899997666666665 58899999865433333
Q ss_pred eCCCCCCeEEEEEeCCCCCEEEEEEC--CCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeC-CCcEEEEEc
Q 001336 843 FMPPPPAATFLAFHPQDNNIIAIGME--DSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGA-DSQLCVWST 919 (1097)
Q Consensus 843 ~~~~~~~i~~l~~sp~~~~~la~g~~--dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~-Dg~i~iwd~ 919 (1097)
+...-.....+++.| ....|..... .+.|...+++...........-...+.|++.+++..|+.+.. .+.|...++
T Consensus 430 ~~~~l~~P~~iavdp-~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~ 508 (619)
T 3s94_A 430 ISEDLEEPRAIVLDP-MVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT 508 (619)
T ss_dssp ECTTCCSEEEEEEET-TTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEES
T ss_pred EECCCCCeeeEEEEc-CCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEec
Confidence 333446789999999 5345544443 356666666533222222333455789999987777766654 467888888
Q ss_pred CCCc
Q 001336 920 DGWE 923 (1097)
Q Consensus 920 ~~~~ 923 (1097)
+...
T Consensus 509 dG~~ 512 (619)
T 3s94_A 509 DGTG 512 (619)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 7643
No 242
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.86 E-value=2e-09 Score=119.94 Aligned_cols=190 Identities=7% Similarity=-0.043 Sum_probs=110.6
Q ss_pred CCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCc
Q 001336 392 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES 471 (1097)
Q Consensus 392 d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 471 (1097)
++..|++++.||.|+.||..+|+.+-.. .. +.+.+..+..++. ++++++.|+.|+.||..+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~---~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTL---KE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEE---EC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEe---cC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 6789999999999999999999876543 22 4455555666776 677788999999999999998777654422
Q ss_pred CeEEEeecccC-CccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC
Q 001336 472 PVYSICPHHKE-NIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 550 (1097)
Q Consensus 472 ~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 550 (1097)
... ...+.- ++..+++++.|+.|+.||.++++....+..+. ...++|++..+++++. ++.|..||..++
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 110 001111 23578888889999999999988877665443 2345678888888765 346999999999
Q ss_pred eeeEEecCCCCcceEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceEEEEec
Q 001336 551 AVKRTYHGLGKRSVGVVQFDTTK---NRFLAAGDEFMIKFWDMDNVNLLASIDA 601 (1097)
Q Consensus 551 ~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 601 (1097)
+.+..+.... .....+..+. ..+++++.||.|+.||..+|+.+.....
T Consensus 151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 8765554221 1122333332 5677888999999999999998877763
No 243
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.86 E-value=1.9e-07 Score=102.68 Aligned_cols=266 Identities=11% Similarity=0.030 Sum_probs=170.4
Q ss_pred CCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEE
Q 001336 319 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 398 (1097)
Q Consensus 319 ~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 398 (1097)
...+.++...++|. + .+|+.+ |..+|. +++.+... ...........+. +..|..
T Consensus 59 ~~~~~~~~~~~~g~-l-~v~t~~--l~~~d~-~g~~~~~~-------------------~~~~~~~~~~~~~--~~~l~v 112 (330)
T 3hxj_A 59 EIIECRPSIGKDGT-I-YFGSDK--VYAINP-DGTEKWRF-------------------DTKKAIVSDFTIF--EDILYV 112 (330)
T ss_dssp GEEEECCEETTTTE-E-CCSSCE--EEEECC-CGGGGGGS-------------------CC-----CCEEEE--TTEEEE
T ss_pred CCcccceEEecCCc-E-EEecCc--EEEECC-CCcEEEEE-------------------ECCCCcccCceEE--CCEEEE
Confidence 34567888888886 3 344444 888886 55443211 1111112222232 566778
Q ss_pred EECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEee
Q 001336 399 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICP 478 (1097)
Q Consensus 399 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 478 (1097)
++.++.|..+|.. ++.... ...+...+.++...+++. +..++.++.|..+|.. ++.+..+......+.++.+
T Consensus 113 ~t~~~~l~~~d~~-g~~~~~---~~~~~~~~~~~~~~~~g~---l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~ 184 (330)
T 3hxj_A 113 TSMDGHLYAINTD-GTEKWR---FKTKKAIYATPIVSEDGT---IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI 184 (330)
T ss_dssp ECTTSEEEEECTT-SCEEEE---EECSSCCCSCCEECTTSC---EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred EecCCEEEEEcCC-CCEEEE---EcCCCceeeeeEEcCCCE---EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence 8889999999988 654432 333444566677777776 6678888999999988 8877777655555666655
Q ss_pred cccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecC
Q 001336 479 HHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG 558 (1097)
Q Consensus 479 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 558 (1097)
+.++. +..++ +.|..+| .++............+.++...++|...+... +..|..+|. +++.+..+..
T Consensus 185 --d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~-----~~gl~~~~~-~g~~~~~~~~ 252 (330)
T 3hxj_A 185 --GKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSL-----DGHLYAINP-DGTEKWRFKT 252 (330)
T ss_dssp --CTTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEET-----TTEEEEECT-TSCEEEEEEC
T ss_pred --cCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcC-----CCeEEEECC-CCCEeEEeeC
Confidence 44544 44455 8888998 66666666665556788888888887666542 234777874 5555555544
Q ss_pred CCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001336 559 LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 636 (1097)
Q Consensus 559 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~ 636 (1097)
... .+..+.+.+++ .|..++.+|.|..+|. +++.+..+... ...+.++...+++. |..++.+|.+++.....
T Consensus 253 ~~~-~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~--~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 253 GKR-IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETG--SWIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp SSC-CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECS--SCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred CCC-ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcC--CccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 332 33345555454 6777888889999996 67777776643 34567778877775 56688999999876543
No 244
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.85 E-value=6e-08 Score=110.13 Aligned_cols=272 Identities=14% Similarity=0.091 Sum_probs=171.3
Q ss_pred cCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEE-c-CCCCEEEEEe------------------CCC
Q 001336 524 ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQF-D-TTKNRFLAAG------------------DEF 583 (1097)
Q Consensus 524 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~dg 583 (1097)
+||+++..+..+ +..|.+.|+.+.++.+.+.-........+++ + |+++++++++ .++
T Consensus 99 ~DG~~lfVnd~~---~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 99 YDGRFLFMNDKA---NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEEETT---TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred cCCCEEEEEcCC---CCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 389999886543 4579999999999888555433335778887 5 9999999985 345
Q ss_pred cEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcE-EEEEcCCCceEEEEecccccccccccccccccC
Q 001336 584 MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI-KILANADGIRLLRTVESRTFDASRVASAAIVKA 662 (1097)
Q Consensus 584 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i-~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (1097)
.+.++|.++.+...++...+ .-..++++|+|+++++.+.+..- ...+..+.
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~------------------------- 227 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTA------------------------- 227 (595)
T ss_dssp EEEEEETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTC-------------------------
T ss_pred eEEEEECCCCeEEEEEEeCC---CccceEECCCCCEEEEEecCcccCcchhhccc-------------------------
Confidence 79999999999998887543 23578899999999988865321 00000000
Q ss_pred CcccccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccce
Q 001336 663 PAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRV 742 (1097)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i 742 (1097)
..-..+.+.+....
T Consensus 228 ----------------------------------------------~~~d~v~V~~~~~~-------------------- 241 (595)
T 1fwx_A 228 ----------------------------------------------AEMDHIVVFNIAEI-------------------- 241 (595)
T ss_dssp ----------------------------------------------CSEEEEEEEEHHHH--------------------
T ss_pred ----------------------------------------------cccceEEEeeccce--------------------
Confidence 00011111111100
Q ss_pred EEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEE
Q 001336 743 SRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVM 822 (1097)
Q Consensus 743 ~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la 822 (1097)
..+.++|+.... +.+.|.|....+ +......++ -.....++.++|||++++
T Consensus 242 --~~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ip---vg~~PhGv~~sPDGk~v~ 292 (595)
T 1fwx_A 242 --EKAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIP---IANNPHGCNMAPDKKHLC 292 (595)
T ss_dssp --HHHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEE---EESSCCCEEECTTSSEEE
T ss_pred --eEeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEe---cCCCceEEEEcCCCCEEE
Confidence 001223332222 225554433100 222111111 123456899999999999
Q ss_pred EEe--CCeEEEEEcCCCc------------eeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEccc---------
Q 001336 823 SAS--GGKISLFNMMTFK------------TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV--------- 879 (1097)
Q Consensus 823 ~~s--dg~i~iwd~~~~~------------~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~--------- 879 (1097)
+++ +++|.++|+.+.+ ....+. -......++|+| +|...++...|++|.+||+.+
T Consensus 293 V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~ 370 (595)
T 1fwx_A 293 VAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEK 370 (595)
T ss_dssp EECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCS
T ss_pred EeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccc
Confidence 987 6899999998653 223332 345688999999 775556677899999999987
Q ss_pred -ceEEEEecccccCe-----EEEEEecCCCEEEEEeC---CCc----------EEEEEcCCCc
Q 001336 880 -DEVKTKLKGHQKRI-----TGLAFSNTLNVLVSSGA---DSQ----------LCVWSTDGWE 923 (1097)
Q Consensus 880 -~~~~~~l~~h~~~V-----~~l~~s~dg~~l~s~~~---Dg~----------i~iwd~~~~~ 923 (1097)
.+.+.++..|..+- .++.++|||++|+++.. |.. -.++|+.+++
T Consensus 371 ~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 371 VDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred cceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 56777777765432 22355799999998754 442 1788996655
No 245
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.83 E-value=7.8e-10 Score=123.33 Aligned_cols=186 Identities=15% Similarity=0.051 Sum_probs=111.5
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccC-eE
Q 001336 817 NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR-IT 894 (1097)
Q Consensus 817 dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~-V~ 894 (1097)
++..+++++ |+.|+.||..+|+.+..+.. +.+.+..+.. ++.++++++.||.|+.||..+|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 566777777 89999999999999988875 4555555556 6778888889999999999999877766544221 11
Q ss_pred -EEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-EeCCeEEEEeCCCcc
Q 001336 895 -GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLE 972 (1097)
Q Consensus 895 -~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~~d~~v~vwd~~~~~ 972 (1097)
+..+. ++..+++++.|+.|+.||..+++..-. ...+. ...++|++..+++ +.++.|+.||..+|+
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~-----~~~~~-------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT-----LSSAF-------ADSLSPSTSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC----------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE-----ecCCC-------cccccccCCEEEEEecCCEEEEEECCCCC
Confidence 11111 345778888899999999998774311 11110 1345667777777 578999999999998
Q ss_pred eeeeeeccCCCCCEEEEEEecCC---CEEEEEecCCeEEEEeCCCCceeeeeC
Q 001336 973 CLKQFVPREASGPITHATYSCDS---QSIYVAFEEGSVGVLTASTLRLRCRIN 1022 (1097)
Q Consensus 973 ~~~~~~~~~h~~~v~~v~~s~dg---~~l~s~s~Dg~v~vwd~~~~~~~~~~~ 1022 (1097)
.+..+.... ....+++.+. ..+++++.||.|..||..+|+.+.+..
T Consensus 152 ~~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 152 LRWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CCCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EEEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 876654221 2233444432 457778899999999999999876655
No 246
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.81 E-value=0.0015 Score=82.71 Aligned_cols=287 Identities=8% Similarity=0.051 Sum_probs=145.0
Q ss_pred CCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccC----CCE
Q 001336 320 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD----GTL 395 (1097)
Q Consensus 320 ~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----~~~ 395 (1097)
..-+++++-.+| ++..||..|.=.+|.+..........+.+.+ .-..-++|..++.... ...
T Consensus 327 ~~~ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~------------~~~N~~PI~D~~v~d~~~~~~~~ 392 (1158)
T 3ei3_A 327 SIAECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME------------TFTNLGPIVDMCVVDLERQGQGQ 392 (1158)
T ss_dssp SCCSEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE------------EECCCCSEEEEEEECTTSSSCCE
T ss_pred cCccEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe------------eecCcCCceeEEEEccCCCCCCe
Confidence 334666666666 5688898888788887643210000001000 1123467777776432 234
Q ss_pred EEEEE---CCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEec---CCCcEEEEEEeCCCcEEEEECCCCceeEEee--
Q 001336 396 FGVAY---SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY---PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-- 467 (1097)
Q Consensus 396 las~~---~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~---d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-- 467 (1097)
|++++ .+|.+++..-.-+-.......+.+ -..++.+.... .+. +|+.+..+.+ +|+.+. ++.+....
T Consensus 393 i~~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~-~e~veev~~~ 467 (1158)
T 3ei3_A 393 LVTCSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLN-GEEVEETELM 467 (1158)
T ss_dssp EEEEECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEE-TTEEEEECCT
T ss_pred EEEEECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEe-CCcccccccc
Confidence 55443 468888876543322222223443 34566665432 233 5666666655 455542 22333321
Q ss_pred cCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCC-CceEEEEEccCCCEEEEeeeCCCCCceEEEEe
Q 001336 468 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSADGARLFSCGTNKEGESYLVEWN 546 (1097)
Q Consensus 468 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 546 (1097)
+.......++...-+++ .++=... ..|++.+.+.......+.... ..|...+.+. .+++.+. + +.+.++.
T Consensus 468 gf~~~~~TL~~~~l~~~-~ivQVt~-~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g----~~l~~fe 538 (1158)
T 3ei3_A 468 GFVDDQQTFFCGNVAHQ-QLIQITS-ASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-G----RALYYLQ 538 (1158)
T ss_dssp TCCSSSCEEEEEEETTT-EEEEEES-SCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-T----TEEEEEE
T ss_pred cccCCCCcEEEEEcCCC-eEEEEec-CEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-C----CEEEEEE
Confidence 11111111111111121 2222221 345666655444444444333 3566666543 4555553 2 2466666
Q ss_pred CCCCeeeEEecCCCCcceEEEEEcCC------CCEEEEEeC-CCcEEEEECCCCceEEEEecCCCCCCcceEEEc--CCC
Q 001336 547 ESEGAVKRTYHGLGKRSVGVVQFDTT------KNRFLAAGD-EFMIKFWDMDNVNLLASIDADGGLQASPCIRFN--KEG 617 (1097)
Q Consensus 547 ~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s--~~~ 617 (1097)
+..+++.......-...|.|+++.+. +.+++.|.. |++|+|+++.+.+.+....... .....++.+. ...
T Consensus 539 l~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-~~~p~si~l~~~~~~ 617 (1158)
T 3ei3_A 539 IHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-EIIPRSILMTTFESS 617 (1158)
T ss_dssp EETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-SCCEEEEEEEEETTE
T ss_pred eeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-CCCCcEEEEEEeCCC
Confidence 66554322211111237899988763 368899985 9999999999877766554321 1122333332 233
Q ss_pred CEEEEEECCCcEEEEEcC
Q 001336 618 ILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 618 ~~l~s~~~dg~i~iw~~~ 635 (1097)
.+|..|-.||.+.-+.+.
T Consensus 618 ~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 618 HYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp EEEEEEETTSEEEEEEEC
T ss_pred cEEEEEeCCCeEEEEEEc
Confidence 578888888887665543
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.79 E-value=1.1e-05 Score=85.26 Aligned_cols=224 Identities=12% Similarity=0.051 Sum_probs=142.0
Q ss_pred CCeEEEEEccCCCEEEEEE-CCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC
Q 001336 382 ASVNRVMWSPDGTLFGVAY-SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 460 (1097)
Q Consensus 382 ~~V~~v~~spd~~~las~~-~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 460 (1097)
..+..++|++++..|..+. .++.|.+++..++.. .. .+.........+++++++.. ++++....+.|.++++...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~--~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TT--IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EE--EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EE--EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 3578999999776666554 568999999976542 21 12222346789999997664 4556666789999997644
Q ss_pred ceeEEeecCCcCeEEEeecccCCccEEEEEcC--CCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCC
Q 001336 461 TKQYIFEGHESPVYSICPHHKENIQFIFSTAT--DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG 538 (1097)
Q Consensus 461 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 538 (1097)
...............+++++. ++.+.++... .+.|..++++.................+++++++..|..+.. .
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~-~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~---~ 187 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---G 187 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---T
T ss_pred CEEEEEECCCCCccEEEEeeC-CCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---C
Confidence 322222222245678888442 2333344333 468888888754333322233346789999999888777653 2
Q ss_pred CceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCC
Q 001336 539 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 617 (1097)
Q Consensus 539 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 617 (1097)
...|..+|.........+.+.. ....++.. +..++.+. .++.|.++|..+++.+..+.... ......+++.|++
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~~~--~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~~ 262 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEGLQ--YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALSQ 262 (267)
T ss_dssp TTEEEEEETTEEEEEEEEECCC--SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECSC
T ss_pred CCEEEEEecCCCceEEEecCCC--CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCcc
Confidence 4579999987654444333322 34556654 45555555 67899999999999988886421 2235678888875
Q ss_pred C
Q 001336 618 I 618 (1097)
Q Consensus 618 ~ 618 (1097)
.
T Consensus 263 ~ 263 (267)
T 1npe_A 263 C 263 (267)
T ss_dssp C
T ss_pred C
Confidence 3
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.78 E-value=3.4e-06 Score=101.50 Aligned_cols=169 Identities=11% Similarity=0.121 Sum_probs=114.6
Q ss_pred EEEEeCCCCCEEEEEECCCc-------------------EEEEEcccceEEEEecc--cc-------cCeEEEEEecCCC
Q 001336 852 FLAFHPQDNNIIAIGMEDSS-------------------IQIYNVRVDEVKTKLKG--HQ-------KRITGLAFSNTLN 903 (1097)
Q Consensus 852 ~l~~sp~~~~~la~g~~dg~-------------------v~vwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg~ 903 (1097)
.++++| +..+++.++.++. |..+|..+|+.+..++. |. .+.....+..+|+
T Consensus 234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK 312 (668)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence 578888 6778888877763 99999999998877654 32 2333333344775
Q ss_pred ---EEEEEeCCCcEEEEEcCCCcccceeeE-------ee--cCCC-------------------CCCccCCeEEEEcCCC
Q 001336 904 ---VLVSSGADSQLCVWSTDGWEKQASKFL-------TI--PNGR-------------------TASALADTRVQFHLDQ 952 (1097)
Q Consensus 904 ---~l~s~~~Dg~i~iwd~~~~~~~~~~~~-------~~--~~~~-------------------~~~~~~v~~l~~s~dg 952 (1097)
.++.++.+|.++++|..+++....... .+ ..+. ......-..++++|+.
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 688899999999999999885411000 00 0000 0000011237888887
Q ss_pred cEEEEE-------------------------------------eCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCC
Q 001336 953 THLLAV-------------------------------------HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDS 995 (1097)
Q Consensus 953 ~~l~~~-------------------------------------~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg 995 (1097)
..+.+. .++.|..||+.+++.+-.... ...+....++..+
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~g 469 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTAG 469 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETT
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeCC
Confidence 766541 137799999999998876653 2233444566678
Q ss_pred CEEEEEecCCeEEEEeCCCCceeeeeCCC
Q 001336 996 QSIYVAFEEGSVGVLTASTLRLRCRINPT 1024 (1097)
Q Consensus 996 ~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~ 1024 (1097)
.++++++.|+.+++||..+|+.+.++...
T Consensus 470 g~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 470 NLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CEEEEECCcccchhhhhhcChhheEecCC
Confidence 89999999999999999999999888743
No 249
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.74 E-value=1e-06 Score=90.86 Aligned_cols=216 Identities=11% Similarity=0.028 Sum_probs=145.4
Q ss_pred ceeEEeCCCCC--CeEEEEEeCCCCCEEEEEEC--CCcEEEEEcccceEEEEeccccc-CeEEEEEecCCCEEE-EEeCC
Q 001336 838 KTMTTFMPPPP--AATFLAFHPQDNNIIAIGME--DSSIQIYNVRVDEVKTKLKGHQK-RITGLAFSNTLNVLV-SSGAD 911 (1097)
Q Consensus 838 ~~~~~~~~~~~--~i~~l~~sp~~~~~la~g~~--dg~v~vwd~~~~~~~~~l~~h~~-~V~~l~~s~dg~~l~-s~~~D 911 (1097)
+.+.++. |.. ....++|++ ++.++++.+. ++.|+++|+.+++.+..+.-... ....+++. +..|+ +.-.+
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred eEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 4555664 443 368999998 6655554443 57999999999998887653221 12345554 44554 44567
Q ss_pred CcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEEEEeCCCcceeeeeeccCCC---CCEE
Q 001336 912 SQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPREAS---GPIT 987 (1097)
Q Consensus 912 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~---~~v~ 987 (1097)
+.+.++|..+.+.... +. .+ .. ..+.+++||+.|+++ .++.|.++|.++.+.+..+....+. ..+.
T Consensus 86 ~~v~viD~~t~~v~~~--i~--~g-~~-----~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKN--FT--HQ-MK-----DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp SEEEEEETTTTEEEEE--EE--CC-SS-----SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred CEEEEEECCCCcEEEE--EE--CC-CC-----CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence 8999999998664322 22 22 11 124467788877775 5689999999999988888754322 2467
Q ss_pred EEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCC----CCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEe
Q 001336 988 HATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLP----TNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIE 1063 (1097)
Q Consensus 988 ~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~----~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~ 1063 (1097)
.+.|. ||+..+....++.|.+-|..+++.+.++..+...+ ..+.....+..|+|+|+...+++++...+.|++-+
T Consensus 156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 88888 78666666568999999999999988887432100 11112223446699996667888888999999999
Q ss_pred cCCCC
Q 001336 1064 PLEAE 1068 (1097)
Q Consensus 1064 ~~~~~ 1068 (1097)
+....
T Consensus 235 l~~~~ 239 (266)
T 2iwa_A 235 LHLVR 239 (266)
T ss_dssp EEECC
T ss_pred Eeccc
Confidence 97643
No 250
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.73 E-value=0.0013 Score=77.74 Aligned_cols=528 Identities=9% Similarity=0.010 Sum_probs=274.2
Q ss_pred eEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEE-ECCCEEEEEEcc
Q 001336 333 ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA-YSKHIVHLYTYH 411 (1097)
Q Consensus 333 ~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~-~~dg~i~iwd~~ 411 (1097)
+|+++ ..+.|+..++.+...... +....-..+..|+|++++..|..+ ..++.|..+++.
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~ 67 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVA------------------IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEE------------------CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--eCCcEEEEECCCCCcceE------------------EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence 34443 456788888876543211 011223468899999976666655 457889888887
Q ss_pred CCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEE-
Q 001336 412 GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST- 490 (1097)
Q Consensus 412 ~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~- 490 (1097)
.... ... +..-......+++.+.+.. +.++-...+.|.+.++........+...-.....+++.+. +|.+.++-
T Consensus 68 g~~~-~~v--~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~ 142 (628)
T 4a0p_A 68 GSAL-EHV--VEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEW 142 (628)
T ss_dssp SCSC-EEE--ECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEEC
T ss_pred CCCc-EEE--EeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCC
Confidence 6432 211 2222234678888877664 4556666788999997654332223234455678888543 33344443
Q ss_pred cCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEc
Q 001336 491 ATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFD 570 (1097)
Q Consensus 491 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~ 570 (1097)
+..+.|...+++......... .......+++++++..|+.+-. ....|...|+..... ..+..... ....+++.
T Consensus 143 g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav~ 216 (628)
T 4a0p_A 143 GGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDLP-HPFGLTQY 216 (628)
T ss_dssp SSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECCS-CEEEEEEE
T ss_pred CCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccCC-CceEEEEE
Confidence 235778888877555444332 3457789999998888877643 345799999865433 33333222 44567765
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCcceEE-EcCCCCEEEEEECC------C--cEEEEEcCCCceE
Q 001336 571 TTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIR-FNKEGILLAVSTND------N--GIKILANADGIRL 640 (1097)
Q Consensus 571 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~~~~l~s~~~d------g--~i~iw~~~~~~~~ 640 (1097)
. + .++.+. ..+.|...|..+|+....+... ......+. +++..+. +.+. + .+.+-....+..+
T Consensus 217 ~-~-~ly~tD~~~~~I~~~dk~tg~~~~~l~~~--~~~p~~i~v~~~~~q~---~~n~C~~~ng~C~~~C~~~~~~~~~C 289 (628)
T 4a0p_A 217 Q-D-YIYWTDWSRRSIERANKTSGQNRTIIQGH--LDYVMDILVFHSSRQS---GWNECASSNGHCSHLCLAVPVGGFVC 289 (628)
T ss_dssp T-T-EEEEEETTTTEEEEEETTTCCSCEEEECS--CCSCCEEEEECGGGSC---CCCTTTTTGGGCSSEEEEETTTEEEE
T ss_pred C-C-EEEEecCCCCEEEEEECCCCCceEEEecC--CCCcceeeeeeecccc---cceEeccCCCCcchhhhcCCCCCeeE
Confidence 4 3 455444 6888999998888766666432 11222332 2221110 0000 0 0000000000000
Q ss_pred EEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCC-ccccCcccccccccccccccc
Q 001336 641 LRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRN-FTDVKPKIADEAVEKSRIWKL 719 (1097)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~i~~w~~ 719 (1097)
. ++.+ ..+..+++. .+....++.+. ...|+-..+
T Consensus 290 ------------------------~----------C~~g----------~~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l 324 (628)
T 4a0p_A 290 ------------------------G----------CPAH----------YSLNADNRTCSAPTTFLLFSQ-KSAINRMVI 324 (628)
T ss_dssp ------------------------E----------CSTT----------CEECTTSSCEECCSSEEEEEE-TTEEEEECC
T ss_pred ------------------------E----------cCCC----------cEecccCCcCccccceeeeec-cceEEEEec
Confidence 0 0000 000000000 00111222221 233333333
Q ss_pred cccCCCceeeEeccCCCcCccceEEEEEccCCceeeeec-cCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccc
Q 001336 720 TEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA-SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTN 798 (1097)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 798 (1097)
...... ...++.. .-..+.+++|.+....|..+. ..+.|..+++..... ..++..
T Consensus 325 ~~~~~~----~~~l~~~-~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~-------------------~~v~~~ 380 (628)
T 4a0p_A 325 DEQQSP----DIILPIH-SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG-------------------FTVVVS 380 (628)
T ss_dssp CTTCCC----CEECCCT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------------------EEEEC-
T ss_pred ccccCc----eEEEEeh-hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc-------------------eEEEEc
Confidence 211100 0111211 234578899998665555443 467777665432100 001100
Q ss_pred cCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEcCCCceeEEe-CCCCCCeEEEEEeCCCCCEEEEEECCC--cEE
Q 001336 799 DISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTF-MPPPPAATFLAFHPQDNNIIAIGMEDS--SIQ 873 (1097)
Q Consensus 799 ~~~~~~h~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~sp~~~~~la~g~~dg--~v~ 873 (1097)
...+......+..+++...++.|..+. .+.|.+.++. ++....+ .........+++.|..+.++.+-.... .|.
T Consensus 381 ~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~ 459 (628)
T 4a0p_A 381 SVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIE 459 (628)
T ss_dssp -------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEE
T ss_pred ccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEE
Confidence 000000234678999999888776665 5789999985 4444443 334567899999994454444433332 466
Q ss_pred EEEcccceEEEEecccccCeEEEEEecCCCEEEEEeC-CCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCC
Q 001336 874 IYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGA-DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQ 952 (1097)
Q Consensus 874 vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 952 (1097)
..+++...........-...+.|++.+++..|+.+.. .+.|...+++.... +.+.. ... .....+++..
T Consensus 460 r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r---~~~~~--~~~---~~P~glav~~-- 529 (628)
T 4a0p_A 460 RAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANR---IVLED--SNI---LQPVGLTVFE-- 529 (628)
T ss_dssp EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEC--SSC---SCEEEEEEET--
T ss_pred EEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCce---EEEEc--CCC---CCcEEEEEEC--
Confidence 6666533222222323345689999998777776654 57788899866331 11211 111 2245666544
Q ss_pred cEEEEE--eCCeEEEEeCCCcceeeeee
Q 001336 953 THLLAV--HETQIAIYEAPKLECLKQFV 978 (1097)
Q Consensus 953 ~~l~~~--~d~~v~vwd~~~~~~~~~~~ 978 (1097)
..|..+ ..+.|...|..+|+....+.
T Consensus 530 ~~ly~tD~~~~~i~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 530 NWLYWIDKQQQMIEKIDMTGREGRTKVQ 557 (628)
T ss_dssp TEEEEEETTTTEEEEEETTSSSCCEEEE
T ss_pred CEEEEEECCCCeEEEEECcCCCCcEEEe
Confidence 344443 45677777777666554443
No 251
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.73 E-value=1.8e-06 Score=103.99 Aligned_cols=191 Identities=12% Similarity=0.102 Sum_probs=126.1
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeecCCcC----------e-EEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeee
Q 001336 442 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESP----------V-YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY 510 (1097)
Q Consensus 442 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~----------v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 510 (1097)
.++.++.++.|..+|..+|+.+-++...... + ..+++ .+..++.++.|+.|..+|.++++.....
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 4777788899999999999998777543211 0 11122 2357888889999999999999988876
Q ss_pred cCCCC----ceEE-EEEccCCCEEEEeeeCC--CCCceEEEEeCCCCeeeEEecCCC---C-------------------
Q 001336 511 DAPGH----SSTM-MAYSADGARLFSCGTNK--EGESYLVEWNESEGAVKRTYHGLG---K------------------- 561 (1097)
Q Consensus 511 ~~~~~----~v~~-~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~---~------------------- 561 (1097)
..... .+.+ ..+ .++ .++++.... ..++.|..+|..+|+.+-.+.... .
T Consensus 144 ~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 65321 1111 111 133 455443221 124679999999999887775311 0
Q ss_pred --------cceEEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCceEEEEecCCCC-------CC
Q 001336 562 --------RSVGVVQFDTTKNRFLAAGDEFM-------------------IKFWDMDNVNLLASIDADGGL-------QA 607 (1097)
Q Consensus 562 --------~~v~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~ 607 (1097)
.....+++.++...++.++.++. |..+|.++|+.+-.++...+. .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 01123678888889988887763 999999999999888753221 11
Q ss_pred cceEEEcCCCC---EEEEEECCCcEEEEEcCCCc
Q 001336 608 SPCIRFNKEGI---LLAVSTNDNGIKILANADGI 638 (1097)
Q Consensus 608 v~~v~~s~~~~---~l~s~~~dg~i~iw~~~~~~ 638 (1097)
.....+..+|+ .++.++.+|.++++|..+|.
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 22222333564 68889999999999999994
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.72 E-value=2e-06 Score=88.74 Aligned_cols=201 Identities=10% Similarity=0.050 Sum_probs=138.0
Q ss_pred CCeeEEEEccCCCEEEEEe---CCeEEEEEcCCCceeEEeCCCCC-CeEEEEEeCCCCCEEEEEECCCcEEEEEcccceE
Q 001336 807 DAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPP-AATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV 882 (1097)
Q Consensus 807 ~~v~~l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~ 882 (1097)
.....++|++|+.+.++.+ ++.|+++|+.+++.+..+..... ....+++. ++++.++...++.+.++|..+.+.
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 3467899999876555554 47899999999999988753222 23456665 345555666788999999999999
Q ss_pred EEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCC
Q 001336 883 KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HET 961 (1097)
Q Consensus 883 ~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~ 961 (1097)
+.++..-... ...+++||+.|+.+..++.|.++|..+.+.... +.+.....+ ...+..+.|. +|...+.. .++
T Consensus 99 ~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~--I~Vg~~~~p-~~~~nele~~-dg~lyvn~~~~~ 172 (266)
T 2iwa_A 99 IKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKK--HNVKYNGHR-VIRLNELEYI-NGEVWANIWQTD 172 (266)
T ss_dssp EEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEE--EECEETTEE-CCCEEEEEEE-TTEEEEEETTSS
T ss_pred EEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEE--EEECCCCcc-cccceeEEEE-CCEEEEecCCCC
Confidence 9887532121 234667888777777788999999988664332 222211000 0235577788 67544444 578
Q ss_pred eEEEEeCCCcceeeeeeccC---------C--CCCEEEEEEecCCCEEE-EEecCCeEEEEeCCCC
Q 001336 962 QIAIYEAPKLECLKQFVPRE---------A--SGPITHATYSCDSQSIY-VAFEEGSVGVLTASTL 1015 (1097)
Q Consensus 962 ~v~vwd~~~~~~~~~~~~~~---------h--~~~v~~v~~s~dg~~l~-s~s~Dg~v~vwd~~~~ 1015 (1097)
.|.+.|.++++.+..+...+ + ......++|+++++.|+ ++...+.+.+-++...
T Consensus 173 ~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 173 CIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred eEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 99999999999998887432 0 13668999999987654 5556788888887654
No 253
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.69 E-value=1.8e-05 Score=92.80 Aligned_cols=168 Identities=12% Similarity=0.102 Sum_probs=106.2
Q ss_pred EEEEeCCCCCEEEEEECC----------------CcEEEEEcccceEEEEecccc----------cCeEEEEEe-cCC--
Q 001336 852 FLAFHPQDNNIIAIGMED----------------SSIQIYNVRVDEVKTKLKGHQ----------KRITGLAFS-NTL-- 902 (1097)
Q Consensus 852 ~l~~sp~~~~~la~g~~d----------------g~v~vwd~~~~~~~~~l~~h~----------~~V~~l~~s-~dg-- 902 (1097)
.+++.+ ...+++.+..+ +.|.-+|..+|+.+-.++... .++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 456777 56677777665 379999999999887765421 1221 2222 567
Q ss_pred -CEEEEEeCCCcEEEEEcCCCcccceeeEe--------e--cCCC---------------------CCCccCCeEEEEcC
Q 001336 903 -NVLVSSGADSQLCVWSTDGWEKQASKFLT--------I--PNGR---------------------TASALADTRVQFHL 950 (1097)
Q Consensus 903 -~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~--------~--~~~~---------------------~~~~~~v~~l~~s~ 950 (1097)
..++.++.+|.+.++|..+++..-...+. + ..+. ......-..++++|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 56777889999999999988753211100 0 0000 00001123567777
Q ss_pred CCcEEEEE----------------------------------------eCCeEEEEeCCCcceeeeeeccCCCCCEEEEE
Q 001336 951 DQTHLLAV----------------------------------------HETQIAIYEAPKLECLKQFVPREASGPITHAT 990 (1097)
Q Consensus 951 dg~~l~~~----------------------------------------~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~ 990 (1097)
+..++++. ..+.|..||+.+++.+-..... .++..-.
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~ 479 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---FAVWGGT 479 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---SCCCSBC
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC---CCccCcc
Confidence 76665541 2367889999999887666432 1222222
Q ss_pred EecCCCEEEEEecCCeEEEEeCCCCceeeeeCCC
Q 001336 991 YSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPT 1024 (1097)
Q Consensus 991 ~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~ 1024 (1097)
+...+.+++.++.|+.++.||.++|+.+.++...
T Consensus 480 ~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred eEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence 3446778888999999999999999999887633
No 254
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.66 E-value=5.2e-05 Score=79.97 Aligned_cols=241 Identities=12% Similarity=0.038 Sum_probs=146.5
Q ss_pred CEEEEEECCCEEEEEEccCCeeee--eeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCc
Q 001336 394 TLFGVAYSKHIVHLYTYHGGDELR--NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES 471 (1097)
Q Consensus 394 ~~las~~~dg~i~iwd~~~~~~~~--~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 471 (1097)
.+|..+.. +.|+.+++....... ....+......+..++|++++.. ++++...++.|..+++..+.....+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 45555543 478888887653210 00012222345789999997764 455666678999999876654333333334
Q ss_pred CeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCe
Q 001336 472 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 551 (1097)
Q Consensus 472 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 551 (1097)
....+++.+. ++.+.++-...+.|.+++++.................++++|++..|..+.... ....|..+++....
T Consensus 80 ~p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 80 SPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGTN 157 (267)
T ss_dssp CEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSCC
T ss_pred CccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-CCcEEEEEecCCCC
Confidence 6788888543 234556666778999999875443333332234678999999777666554321 13468888875432
Q ss_pred eeEEecCCCCcceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEE-CCCcE
Q 001336 552 VKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST-NDNGI 629 (1097)
Q Consensus 552 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-~dg~i 629 (1097)
...+..........+++++++..|+.+. ..+.|.+++.+.......+.. ......++.. +..++.+. ..+.|
T Consensus 158 -~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~---~~~P~gi~~d--~~~lyva~~~~~~v 231 (267)
T 1npe_A 158 -RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG---LQYPFAVTSY--GKNLYYTDWKTNSV 231 (267)
T ss_dssp -CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC---CCSEEEEEEE--TTEEEEEETTTTEE
T ss_pred -cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC---CCCceEEEEe--CCEEEEEECCCCeE
Confidence 2322211122567899999887776665 678999999986554444432 1223466654 44454444 56899
Q ss_pred EEEEcCCCceEEEEec
Q 001336 630 KILANADGIRLLRTVE 645 (1097)
Q Consensus 630 ~iw~~~~~~~~~~~~~ 645 (1097)
..++..++ +....+.
T Consensus 232 ~~~d~~~g-~~~~~i~ 246 (267)
T 1npe_A 232 IAMDLAIS-KEMDTFH 246 (267)
T ss_dssp EEEETTTT-EEEEEEC
T ss_pred EEEeCCCC-CceEEEc
Confidence 99999887 4555543
No 255
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.64 E-value=0.0044 Score=78.40 Aligned_cols=452 Identities=10% Similarity=0.056 Sum_probs=224.2
Q ss_pred CCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCC------CcEEEEEEeC-CCcEEE
Q 001336 382 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPN------KQLSVVTCGE-DRVIKV 454 (1097)
Q Consensus 382 ~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~------~~~~l~s~s~-d~~i~i 454 (1097)
..|.+.+.+ +.+++.+. ++.+.++++..++ +...... .-...|.|+++.+.+ . +++.|.. |++|+|
T Consensus 514 ~~I~~As~n--~~~vvva~-g~~l~~fel~~~~-L~~~~~~-~l~~evscl~i~~~~~~~~~s~--~~aVg~~~d~tv~I 586 (1158)
T 3ei3_A 514 KNISVASCN--SSQVVVAV-GRALYYLQIHPQE-LRQISHT-EMEHEVACLDITPLGDSNGLSP--LCAIGLWTDISARI 586 (1158)
T ss_dssp CCCCEEEEC--SSEEEEEE-TTEEEEEEEETTE-EEEEEEE-ECSSCEEEEECCCCSSSTTCCS--EEEEEETTTTEEEE
T ss_pred CEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCc-eeeeccc-CCCCceEEEEeecCCCCccccc--EEEEEECCCCEEEE
Confidence 456666654 34666665 6788888888764 2222222 235679999998642 4 7888886 999999
Q ss_pred EECCCCceeEEeec-CCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCC--cee--eecCCCCceEEEEEccCCCEE
Q 001336 455 WDAVTGTKQYIFEG-HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG--SRV--DYDAPGHSSTMMAYSADGARL 529 (1097)
Q Consensus 455 wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~--~~~~~~~~v~~~~~s~~~~~l 529 (1097)
+++.+.+.+....- -.....++++.......+|..|-.||.+..+.++... ... .......++.-..+...|..-
T Consensus 587 ~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~ 666 (1158)
T 3ei3_A 587 LKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTN 666 (1158)
T ss_dssp EETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEE
T ss_pred EECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCcee
Confidence 99987766643321 1234455554433344688999999998777665322 111 112222344444444444433
Q ss_pred EEeeeCCCCCceEEEEeCCCCeeeEE-ecCCCCcceEEEEEcCCC--CEEEEEeCCCcEEEEECCCCce--EEEEecCCC
Q 001336 530 FSCGTNKEGESYLVEWNESEGAVKRT-YHGLGKRSVGVVQFDTTK--NRFLAAGDEFMIKFWDMDNVNL--LASIDADGG 604 (1097)
Q Consensus 530 ~~~~~~~~~~~~i~~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~ 604 (1097)
+.+..+ ...+ ++..+ ++.... +.. ...-....|+... +-++..+ ++.++|..++.... +.++..
T Consensus 667 V~a~s~---rp~l-iy~~~-~~l~~s~l~~--~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL--- 735 (1158)
T 3ei3_A 667 VFACSD---RPTV-IYSSN-HKLVFSNVNL--KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPL--- 735 (1158)
T ss_dssp EEEESS---SCEE-EEESS-SSEEEEEBSS--SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEEC---
T ss_pred EEEECC---CCEE-EEEcC-CceEEeccCh--HHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeC---
Confidence 333222 2233 33323 332221 111 1122334554322 4455444 45699988765433 333433
Q ss_pred CCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCceEEEEe---cccccccccccccccccCCcccccccCcccccccccc
Q 001336 605 LQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTV---ESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGE 681 (1097)
Q Consensus 605 ~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1097)
...+..++++|+.+.++.+..+. ..++........... ......... . .. ...........+.+.
T Consensus 736 ~~Tprri~y~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~----~~~~~~~~~~~~g~~--- 803 (1158)
T 3ei3_A 736 YESPRKICYQEVSQCFGVLSSRI--EVQDTSGGTTALRPSASTQALSSSVSS-S--KL----FSSSTAPHETSFGEE--- 803 (1158)
T ss_dssp SSEEEEEEEEGGGTEEEEEEEEE--EEECSSSSEEESSCCHHHHCSEEEECC-C--CC----C----------CCCE---
T ss_pred CCCceEEEEcCCCCEEEEEEEec--cccccccccchhhhhhhhhhhhhcccc-c--cc----ccccccCchhhcCCc---
Confidence 23678999999888777765432 122221100000000 000000000 0 00 000000000000000
Q ss_pred ccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccC-Cceeeeecc-
Q 001336 682 RTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS-GLAILALAS- 759 (1097)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-g~~l~~~~~- 759 (1097)
..-..+++.|-.+. .....+.+........+..+.|..+ ..++++|+.
T Consensus 804 ---------------------------~~~s~i~lidp~t~---~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~ 853 (1158)
T 3ei3_A 804 ---------------------------VEVHNLLIIDQHTF---EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAM 853 (1158)
T ss_dssp ---------------------------EEEEEEEEEETTTC---CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEE
T ss_pred ---------------------------eeeEEEEEEeCCCC---eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeee
Confidence 00123444333211 1222333333222223333344433 356666652
Q ss_pred ---------CcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEE
Q 001336 760 ---------NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKIS 830 (1097)
Q Consensus 760 ---------dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sdg~i~ 830 (1097)
.|.|.+|++. .+++....-. ...+.|++++-- +| +|+++-+.+|+
T Consensus 854 ~~~~e~~~~~Gri~vf~v~----------------------~~kL~lv~~~--~v~g~v~al~~~-~g-~Lla~ig~~l~ 907 (1158)
T 3ei3_A 854 VYPEEAEPKQGRIVVFQYS----------------------DGKLQTVAEK--EVKGAVYSMVEF-NG-KLLASINSTVR 907 (1158)
T ss_dssp CCTTCSSCCCEEEEEEEEE----------------------TTEEEEEEEE--EESSCEEEEEEE-TT-EEEEEETTEEE
T ss_pred cCCCCCCCCceEEEEEEEE----------------------CCEEEEEEEE--EcCCcCEEEeee-CC-EEEEEcCCEEE
Confidence 3566666543 2221111111 135678877643 34 67777789999
Q ss_pred EEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcc--cceEEEEe-cccccCeEEEEEecCCCEEEE
Q 001336 831 LFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVR--VDEVKTKL-KGHQKRITGLAFSNTLNVLVS 907 (1097)
Q Consensus 831 iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~--~~~~~~~l-~~h~~~V~~l~~s~dg~~l~s 907 (1097)
+|++...+.++.-..+-..|..+.... .+.++++|+.-..|.++..+ .++....- .-+...++++.|-.++ .++.
T Consensus 908 vy~l~~~~~L~~~~~~~~~i~~~~l~~-~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~ 985 (1158)
T 3ei3_A 908 LYEWTTEKELRTECNHYNNIMALYLKT-KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLG 985 (1158)
T ss_dssp EEEECTTSCEEEEEEECCCSCEEEEEE-ETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEE
T ss_pred EEECCCCceEEEEeeccccEEEEEEec-cCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEE
Confidence 999976554441111112233333323 45789999988888876554 34433222 2355678888887654 6677
Q ss_pred EeCCCcEEEEEcCC
Q 001336 908 SGADSQLCVWSTDG 921 (1097)
Q Consensus 908 ~~~Dg~i~iwd~~~ 921 (1097)
+..+|.|.+.....
T Consensus 986 aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 986 AENAFNLFVCQKDS 999 (1158)
T ss_dssp EETTSEEEEEEECT
T ss_pred EcCCCcEEEEecCC
Confidence 89999999987765
No 256
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.63 E-value=2e-05 Score=92.65 Aligned_cols=198 Identities=8% Similarity=-0.093 Sum_probs=121.5
Q ss_pred EEEEccCCCEEEEEe-C----------------CeEEEEEcCCCceeEEeCCCC---------CCeEEEEEeCCCC---C
Q 001336 811 CFALSKNDSYVMSAS-G----------------GKISLFNMMTFKTMTTFMPPP---------PAATFLAFHPQDN---N 861 (1097)
Q Consensus 811 ~l~~s~dg~~la~~s-d----------------g~i~iwd~~~~~~~~~~~~~~---------~~i~~l~~sp~~~---~ 861 (1097)
.+++.++...+..+. + +.|..+|..+++.+..++... .....+.... ++ +
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~-~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEeccc-CCcEEE
Confidence 456777666666554 2 258999999999888775321 1111223334 56 3
Q ss_pred EEEEEECCCcEEEEEcccceEEEEecccc-------------cCe--------------------------EEEEEecCC
Q 001336 862 IIAIGMEDSSIQIYNVRVDEVKTKLKGHQ-------------KRI--------------------------TGLAFSNTL 902 (1097)
Q Consensus 862 ~la~g~~dg~v~vwd~~~~~~~~~l~~h~-------------~~V--------------------------~~l~~s~dg 902 (1097)
+++.++.+|.++++|..+|+.+....... .++ ..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 67888999999999999999876654211 111 235788888
Q ss_pred CEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeeeeeccCC
Q 001336 903 NVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREA 982 (1097)
Q Consensus 903 ~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h 982 (1097)
.+++....+....++..... ...+..- .+....+..+|.+. ....++.|..||..+++.+-.+...
T Consensus 398 g~~yv~~~~~~~~~~~~~~~---------~~~g~~~-~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~-- 463 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLP---------YRAGQFF-VGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEK-- 463 (571)
T ss_dssp TEEEEEEECEEEEEEECCCC---------CCTTSCC-CCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEES--
T ss_pred CEEEEEchhccccccccccc---------cccCCcc-ccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCC--
Confidence 88888777766655554321 0011100 00001122233321 0013578999999999987776532
Q ss_pred CCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCC
Q 001336 983 SGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPT 1024 (1097)
Q Consensus 983 ~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~ 1024 (1097)
..+.+..+...+.+++.++.|+.|++||..+|+.+.++...
T Consensus 464 -~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 464 -FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp -SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred -CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence 22333334445667777999999999999999999887744
No 257
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.60 E-value=2.4e-06 Score=86.68 Aligned_cols=185 Identities=11% Similarity=0.113 Sum_probs=126.7
Q ss_pred CCeeEEEEccCCCEEEEEe-CC--eEEEEEcCCCceeEEeCCCCCCeEE--EEEeCCCCCEEEEEECCCcEEEEEcccce
Q 001336 807 DAVPCFALSKNDSYVMSAS-GG--KISLFNMMTFKTMTTFMPPPPAATF--LAFHPQDNNIIAIGMEDSSIQIYNVRVDE 881 (1097)
Q Consensus 807 ~~v~~l~~s~dg~~la~~s-dg--~i~iwd~~~~~~~~~~~~~~~~i~~--l~~sp~~~~~la~g~~dg~v~vwd~~~~~ 881 (1097)
.....+.|+ ++.+..+.+ +| .|+++|+++++.+..+... ..... +++. ++++.+....++.+.+||..+.+
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCC
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEe--CCEEEEEEeeCCEEEEEECccCc
Confidence 445789998 676666665 55 7999999999999888643 33333 4554 34555555568899999999999
Q ss_pred EEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecC-CCCCCccCCeEEEEcCCCcEEEEE-e
Q 001336 882 VKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPN-GRTASALADTRVQFHLDQTHLLAV-H 959 (1097)
Q Consensus 882 ~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~s~dg~~l~~~-~ 959 (1097)
.+.++.... ....+++|++.|+.+..++.|.++|..+.+.... +.+.. +... ..+..+.|. +|+..+.. .
T Consensus 119 ~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~--I~V~~~g~~~--~~lNELe~~-~G~lyan~w~ 190 (262)
T 3nol_A 119 QVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRT--ITVTAHGEEL--PELNELEWV-DGEIFANVWQ 190 (262)
T ss_dssp EEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEE--EECEETTEEC--CCEEEEEEE-TTEEEEEETT
T ss_pred EEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEE--EEeccCCccc--cccceeEEE-CCEEEEEEcc
Confidence 998887432 2233446787777666678899999988664432 22221 1111 223456776 67644444 6
Q ss_pred CCeEEEEeCCCcceeeeeeccCC----------CCCEEEEEEecCCCEEEEEec
Q 001336 960 ETQIAIYEAPKLECLKQFVPREA----------SGPITHATYSCDSQSIYVAFE 1003 (1097)
Q Consensus 960 d~~v~vwd~~~~~~~~~~~~~~h----------~~~v~~v~~s~dg~~l~s~s~ 1003 (1097)
++.|.+.|.++++.+..+...+- ..-.+.+||+|+++.|++.+.
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 78999999999999988875321 235689999999888776664
No 258
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.58 E-value=0.0046 Score=75.97 Aligned_cols=526 Identities=10% Similarity=0.065 Sum_probs=274.8
Q ss_pred CCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEE
Q 001336 319 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 398 (1097)
Q Consensus 319 ~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 398 (1097)
...|.++....+|. | -.|+.+| +..||..+.+.... .......|.++.. .+| .|..
T Consensus 62 ~~~i~~i~~d~~g~-l-WigT~~G-l~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY-L-YMGTDNG-ILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE-E-EEEETTE-EEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc-E-EEEeCCC-eEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEE
Confidence 35688988888886 3 4555555 78899876532110 0112235777764 355 4556
Q ss_pred EECCCEEEEEEccCCeeeeeeeee-e-cccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEe-ecC----Cc
Q 001336 399 AYSKHIVHLYTYHGGDELRNHLEI-E-AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGH----ES 471 (1097)
Q Consensus 399 ~~~dg~i~iwd~~~~~~~~~~~~l-~-~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h----~~ 471 (1097)
|+.+ -+..+|..+++. ...... . -....|.++....+|. |..|+.+ -|..+|..+++..... ... ..
T Consensus 118 gt~~-Gl~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~---lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKL-TSFDTRRNGLPNNTIYSIIRTKDNQ---IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL 191 (758)
T ss_dssp EETT-EEEEEETTTCCE-EEECHHHHCCSCSCEEEEEECTTCC---EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred EcCC-cceeEeCCCCeE-EEeccCCCCcCCCeEEEEEEcCCCC---EEEEeCC-CHhhCccCCCceEEecCCCccccccc
Confidence 6666 588899877552 221000 0 1234688888877777 3345544 5788897776543211 111 22
Q ss_pred CeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCe
Q 001336 472 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 551 (1097)
Q Consensus 472 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 551 (1097)
.|.++.. +.++..|..|+. +-+..+|..+.............|.++....+|.+.+.. .. -+.+++..+++
T Consensus 192 ~i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-----Gl~~~~~~~~~ 262 (758)
T 3ott_A 192 FVNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DN-----GLYVYHNDTTP 262 (758)
T ss_dssp CEEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TT-----EEEEECCTTSC
T ss_pred eeEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CC-----ceeEEecCCCc
Confidence 4777765 444454444553 457778876543322211223357888888888776654 22 38888887665
Q ss_pred eeEEecC------CCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEec-----CCCCCCcceEEEcCCCCEE
Q 001336 552 VKRTYHG------LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA-----DGGLQASPCIRFNKEGILL 620 (1097)
Q Consensus 552 ~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~v~~s~~~~~l 620 (1097)
....... -....|.++....+|..-+ |+..| +.++... . ....+.. ......|.++.-..+|.+-
T Consensus 263 ~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~-~-~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW 338 (758)
T 3ott_A 263 LQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYN-S-ALQFIPISQITGTGDGNQFYSLFRDSKGFYW 338 (758)
T ss_dssp CEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEE
T ss_pred EEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccC-C-ceeEEecccCCCCCCCceEEEEEEcCCCCEE
Confidence 4332211 1223588888877776544 55556 5554332 2 1222210 1112356777777766654
Q ss_pred EEEECCCcEEEEEcCCCce-EEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCc
Q 001336 621 AVSTNDNGIKILANADGIR-LLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNF 699 (1097)
Q Consensus 621 ~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1097)
+ |+.+| +..++..++.. ....+.
T Consensus 339 i-Gt~~G-l~~~~~~~~~~~~~~~~~------------------------------------------------------ 362 (758)
T 3ott_A 339 F-GGANG-LIRFTDPAGERHDAIWYR------------------------------------------------------ 362 (758)
T ss_dssp E-EETTE-EEEESCTTSSCCCCEEEC------------------------------------------------------
T ss_pred E-eeCCc-ceeecccccccceeEEec------------------------------------------------------
Confidence 4 44444 44444332200 000000
Q ss_pred cccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCcc
Q 001336 700 TDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKA 779 (1097)
Q Consensus 700 ~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 779 (1097)
... .+.......|.++.-..+|..-+ |+. +-+..|+..+.
T Consensus 363 -------------------~~~-----------~~~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~-------- 402 (758)
T 3ott_A 363 -------------------MGD-----------KTYPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATR-------- 402 (758)
T ss_dssp -------------------TTC-----------SSSCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTT--------
T ss_pred -------------------cCC-----------cCCCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCC--------
Confidence 000 00000234577888777887444 444 45666654322
Q ss_pred ccccCCcccCCCCCccccccC---CCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEcCCC-----cee---EEeC---C
Q 001336 780 TTNQAPQLWQPPSGILMTNDI---SDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTF-----KTM---TTFM---P 845 (1097)
Q Consensus 780 ~~~~~~~~w~~~~~~~~~~~~---~~~~h~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~-----~~~---~~~~---~ 845 (1097)
+...... .+......|.++...++|.+.+...++-|.++|..+. ... ..+. +
T Consensus 403 --------------~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (758)
T 3ott_A 403 --------------QFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNG 468 (758)
T ss_dssp --------------EEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGT
T ss_pred --------------cEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccc
Confidence 1111000 0000235688888888887666544667888886431 111 1111 1
Q ss_pred -CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecc---cccCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001336 846 -PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG---HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG 921 (1097)
Q Consensus 846 -~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~---h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~ 921 (1097)
....|.++...+ ++.+.+.++..+-|..+|..+++....... ....+.++....+|.+.+. +.+| +..++.++
T Consensus 469 l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~ 545 (758)
T 3ott_A 469 LSGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKD 545 (758)
T ss_dssp CSCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--
T ss_pred cccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCC
Confidence 223588998888 777666444445588899887765433211 1345788888888877664 4444 88888776
Q ss_pred CcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEe-cCCCEEEE
Q 001336 922 WEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYS-CDSQSIYV 1000 (1097)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s-~dg~~l~s 1000 (1097)
++.... . ..+-. ...|.++... +|.+. .+.++.+..||..+.+... +... ...+....+. +||. |..
T Consensus 546 ~~~~~~---~-~~gl~--~~~i~~i~~~-~g~lW-i~t~~Gl~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~G~-l~f 613 (758)
T 3ott_A 546 ESQQSI---S-FGSFS--NNEILSMTCV-KNSIW-VSTTNGLWIIDRKTMDARQ-QNMT--NKRFTSLLFDPKEDC-VYL 613 (758)
T ss_dssp CCCCBC---C-CCC-----CCEEEEEEE-TTEEE-EEESSCEEEEETTTCCEEE-C--C--CCCCSEEEEETTTTE-EEE
T ss_pred CceEEe---c-ccCCC--ccceEEEEEC-CCCEE-EECCCCeEEEcCCCceeEE-ecCC--CCceeeeEEECCCCc-EEE
Confidence 543221 1 01111 1346777664 66544 4446668888988765432 2111 1223334444 4665 455
Q ss_pred EecCCeEEEEeCC
Q 001336 1001 AFEEGSVGVLTAS 1013 (1097)
Q Consensus 1001 ~s~Dg~v~vwd~~ 1013 (1097)
|+.+|-+ .++-.
T Consensus 614 G~~~Gl~-~f~p~ 625 (758)
T 3ott_A 614 GGADGFG-ISHSN 625 (758)
T ss_dssp ECBSEEE-EEEC-
T ss_pred ecCCceE-EEChh
Confidence 7777744 45543
No 259
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.56 E-value=4.9e-06 Score=84.46 Aligned_cols=210 Identities=10% Similarity=0.106 Sum_probs=138.5
Q ss_pred ceeEEeCCCCCC--eEEEEEeCCCCCEEEEEECCC--cEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEE-eCCC
Q 001336 838 KTMTTFMPPPPA--ATFLAFHPQDNNIIAIGMEDS--SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS-GADS 912 (1097)
Q Consensus 838 ~~~~~~~~~~~~--i~~l~~sp~~~~~la~g~~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~-~~Dg 912 (1097)
+.++++. |... ...+.|+ ++.++.+.+.+| .|+++|+.+++.+..+.... ........+++..|... -.++
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCC
Confidence 4455663 5544 4889998 457777777766 89999999999988876433 34433333345555544 4588
Q ss_pred cEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEEEEeCCCcceeeeeeccCCC---CCEEE
Q 001336 913 QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPREAS---GPITH 988 (1097)
Q Consensus 913 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~---~~v~~ 988 (1097)
.+.++|.++.+.... +... . ....+++|++.|+.+ .++.|.++|.++.+.+..+...... ..++.
T Consensus 108 ~v~v~D~~t~~~~~t--i~~~--~-------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNE 176 (262)
T 3nol_A 108 LGFVWNIRNLRQVRS--FNYD--G-------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNE 176 (262)
T ss_dssp EEEEEETTTCCEEEE--EECS--S-------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEE
T ss_pred EEEEEECccCcEEEE--EECC--C-------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccce
Confidence 999999998764332 2221 1 123445678877775 4678999999999998887753222 34566
Q ss_pred EEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCC----CCCceeeEEEEEcCCCCCEEEEEecCCcEEEEec
Q 001336 989 ATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTN----PSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEP 1064 (1097)
Q Consensus 989 v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~----h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~ 1064 (1097)
+.|. +|+..+..-.++.|.+.|..+++.+..+..+...+.. ....| .-.|||+|+...++++|-.=-.++--.+
T Consensus 177 Le~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~v-lNGIA~dp~~~~lfVTGK~Wp~~~ev~~ 254 (262)
T 3nol_A 177 LEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDV-LNGIAWDKEHHRLFVTGKLWPKVFEITL 254 (262)
T ss_dssp EEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCC-EEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred eEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCc-eEEEEEcCCCCEEEEECCCCCceEEEEE
Confidence 7877 7876666667899999999999999888865332211 11122 2356999976667777766555554444
No 260
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.56 E-value=0.0053 Score=75.42 Aligned_cols=574 Identities=12% Similarity=0.093 Sum_probs=301.9
Q ss_pred CCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEE
Q 001336 319 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 398 (1097)
Q Consensus 319 ~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 398 (1097)
...|+++.-..+|... .|+.+| +..||-..-+ .+... .......|.++.-..+| .|-.
T Consensus 21 ~n~V~~I~qD~~G~lW--igT~~G-L~ryDG~~~~--------~~~~~----------~~~~~~~i~~i~~d~~g-~lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIW--IGSNKG-LFSYDGYSTQ--------QHFTY----------GENNNTRIYCGVIIDNT-YLYM 78 (758)
T ss_dssp CCCEEEEEECTTSCEE--EEESSC-EEEECSSCEE--------ECSCT----------TSTTSSCEEEEEEETTT-EEEE
T ss_pred cceEEEEEECCCCCEE--EEECCC-ccccCCCceE--------EEEcc----------CCCCCceEEEEEEcCCC-cEEE
Confidence 4579999999999733 455666 5556632111 00000 01124579998877766 4555
Q ss_pred EECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEee-----cCCcCe
Q 001336 399 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-----GHESPV 473 (1097)
Q Consensus 399 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-----~h~~~v 473 (1097)
|+.+| +..||..+++. ... .......|.++.. .+|. |..++.+ .+..+|..+++... +. .....|
T Consensus 79 gT~~G-l~~yd~~~~~f-~~~--~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i 148 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRY-EQP--ETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTI 148 (758)
T ss_dssp EETTE-EEEEETTTTEE-CCC--SCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEEE-ECHHHHCCSCSCE
T ss_pred EeCCC-eEEEeCCCCEE-ECc--ccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEEE-eccCCCCcCCCeE
Confidence 66665 78999887642 211 1112345777754 3554 4555555 68889987765432 31 123457
Q ss_pred EEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeee-cC----CCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCC
Q 001336 474 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-DA----PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 548 (1097)
Q Consensus 474 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~----~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 548 (1097)
.++.. +.+|.+.+ ++.+ -+..++..+....... .. ....|.++...+++..|..+... -+..+|..
T Consensus 149 ~~i~~--d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~-----Gl~~~~~~ 219 (758)
T 3ott_A 149 YSIIR--TKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEG-----YLFQYFPS 219 (758)
T ss_dssp EEEEE--CTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEE-----EEEEEETT
T ss_pred EEEEE--cCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECC-----CCeEEcCC
Confidence 77765 45555554 4444 4667776554322111 11 11247888887777655444422 38888987
Q ss_pred CCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC-----CCCCcceEEEcCCCCEEEEE
Q 001336 549 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG-----GLQASPCIRFNKEGILLAVS 623 (1097)
Q Consensus 549 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~s~ 623 (1097)
+++.... .......|.++....+|...+. +.+ -+.+++..+++......... ....|.++....+|.+- .|
T Consensus 220 ~~~~~~~-~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-iG 295 (758)
T 3ott_A 220 TGQIKQT-EAFHNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIW-LG 295 (758)
T ss_dssp TTEEEEE-EEEEEEEEEEEEECTTCCEEEE-ETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEE-EE
T ss_pred CCeEEec-cCCCCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-EE
Confidence 7654322 1111225778888777765554 444 58888887765433221110 12346677776666543 34
Q ss_pred ECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCCccccC
Q 001336 624 TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVK 703 (1097)
Q Consensus 624 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1097)
+..| +.++..... ......
T Consensus 296 T~~G-l~~~~~~~~---~~~~~~--------------------------------------------------------- 314 (758)
T 3ott_A 296 TDYG-ISLSRYNSA---LQFIPI--------------------------------------------------------- 314 (758)
T ss_dssp ESSS-EEEECCCC----CEEEEH---------------------------------------------------------
T ss_pred eCCc-ccccccCCc---eeEEec---------------------------------------------------------
Confidence 4455 433321110 000000
Q ss_pred cccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCcccccc
Q 001336 704 PKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQ 783 (1097)
Q Consensus 704 ~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 783 (1097)
.. .........|.++....+|..-+. +.+|..+ ++...+...
T Consensus 315 ----------------~~-----------~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl~~-~~~~~~~~~--------- 356 (758)
T 3ott_A 315 ----------------SQ-----------ITGTGDGNQFYSLFRDSKGFYWFG-GANGLIR-FTDPAGERH--------- 356 (758)
T ss_dssp ----------------HH-----------HSCSCCCCBEEEEEECTTCCEEEE-ETTEEEE-ESCTTSSCC---------
T ss_pred ----------------cc-----------CCCCCCCceEEEEEEcCCCCEEEe-eCCccee-ecccccccc---------
Confidence 00 000002245777877777775444 4555443 432211000
Q ss_pred CCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEcCCCceeEEe--CC----CCCCeEEEEEeC
Q 001336 784 APQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTF--MP----PPPAATFLAFHP 857 (1097)
Q Consensus 784 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~--~~----~~~~i~~l~~sp 857 (1097)
.+..+..... ...+ ....|.++.-..+|++-+.. ++-|..||..+++...-. .. ....|.++...+
T Consensus 357 ~~~~~~~~~~---~~~l----~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~ 428 (758)
T 3ott_A 357 DAIWYRMGDK---TYPL----SHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT 428 (758)
T ss_dssp CCEEECTTCS---SSCC----SCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT
T ss_pred eeEEeccCCc---CCCC----CCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC
Confidence 0000110000 0001 23568899888888866544 668999998876543321 11 123578888776
Q ss_pred CCCCEEEEEECCCcEEEEEccc------ceEE--EEec---c-cccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccc
Q 001336 858 QDNNIIAIGMEDSSIQIYNVRV------DEVK--TKLK---G-HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQ 925 (1097)
Q Consensus 858 ~~~~~la~g~~dg~v~vwd~~~------~~~~--~~l~---~-h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~ 925 (1097)
++ .|-.|+..+-+.++|..+ .... ..+. + ....|.++...++|.+.+.++..+.|..+|..+++..
T Consensus 429 -~g-~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~ 506 (758)
T 3ott_A 429 -AG-QLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVT 506 (758)
T ss_dssp -TS-EEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEE
T ss_pred -CC-CEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceE
Confidence 55 455677666788898653 1221 1211 1 1235889998889987764444556888998775422
Q ss_pred ceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeeeeeccC-CCCCEEEEEEecCCCEEEEEecC
Q 001336 926 ASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPRE-ASGPITHATYSCDSQSIYVAFEE 1004 (1097)
Q Consensus 926 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~-h~~~v~~v~~s~dg~~l~s~s~D 1004 (1097)
............+.++....+|.+-+.+ .+.+..|+..+++... +...+ ....|.++... +|.+.+ ++.+
T Consensus 507 -----~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~Gl~~~~~~~~~~~~-~~~~gl~~~~i~~i~~~-~g~lWi-~t~~ 577 (758)
T 3ott_A 507 -----KLFADELTGEKSPNYLLCDEDGLLWVGF-HGGVMRINPKDESQQS-ISFGSFSNNEILSMTCV-KNSIWV-STTN 577 (758)
T ss_dssp -----EECTTTSCGGGCEEEEEECTTSCEEEEE-TTEEEEECC--CCCCB-CCCCC---CCEEEEEEE-TTEEEE-EESS
T ss_pred -----EecCCCcCCCcccceEEECCCCCEEEEe-cCceEEEecCCCceEE-ecccCCCccceEEEEEC-CCCEEE-ECCC
Confidence 1111111111356788888888877665 4568889877654322 11111 13568888764 665444 5555
Q ss_pred CeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCCC
Q 001336 1005 GSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1068 (1097)
Q Consensus 1005 g~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~~ 1068 (1097)
| +..||..+.+... +. ++. ..+... .+... ...|..|+.+| +..+++..-.
T Consensus 578 G-l~~~~~~~~~~~~-~~----~~~---~~~~~~--~~~~~-~G~l~fG~~~G-l~~f~p~~~~ 628 (758)
T 3ott_A 578 G-LWIIDRKTMDARQ-QN----MTN---KRFTSL--LFDPK-EDCVYLGGADG-FGISHSNLEA 628 (758)
T ss_dssp C-EEEEETTTCCEEE-C------CC---CCCSEE--EEETT-TTEEEEECBSE-EEEEEC---C
T ss_pred C-eEEEcCCCceeEE-ec----CCC---Cceeee--EEECC-CCcEEEecCCc-eEEEChhhcc
Confidence 5 7788888765432 21 111 122222 22222 34566678887 5666776543
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.55 E-value=3e-06 Score=85.93 Aligned_cols=205 Identities=10% Similarity=0.044 Sum_probs=135.8
Q ss_pred ceeEEeCCCCCC--eEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCC-EEEEEeCCCcE
Q 001336 838 KTMTTFMPPPPA--ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLN-VLVSSGADSQL 914 (1097)
Q Consensus 838 ~~~~~~~~~~~~--i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~-~l~s~~~Dg~i 914 (1097)
+.+.++. |... ...+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ -. .........+++. ..+..-.++.+
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEE
T ss_pred EEEEEEc-CCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEE
Confidence 3445553 4433 5789997 4678888888899999999999888776 22 3333322333444 44445568899
Q ss_pred EEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEEEEeCCCcceeeeeeccCCC---CCEEEEE
Q 001336 915 CVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPREAS---GPITHAT 990 (1097)
Q Consensus 915 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~---~~v~~v~ 990 (1097)
.+||.++.+.... +.. ... ...+++|++.|+++ .++.|.++|.++.+.+..+....+. ..++.+.
T Consensus 119 ~V~D~~Tl~~~~t--i~~--~~e-------GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 119 FTWSGMPPQRERT--TRY--SGE-------GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp EEEETTTTEEEEE--EEC--SSC-------CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEEECCcCcEEEE--EeC--CCc-------eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence 9999998664332 222 111 13344678888876 4789999999999998888754432 2456778
Q ss_pred EecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCC-----CCCCCceeeEEEEEcCCCCCEEEEEecCCcEE
Q 001336 991 YSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLP-----TNPSLRVYPLVIAGNPTDPNQFALGLTDGGVY 1060 (1097)
Q Consensus 991 ~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~ 1060 (1097)
|. +|+..+....++.|.+-|..+++.+..+..+...+ ......| .-.|||+|+...+|+||-.=-.++
T Consensus 188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~v-lNGIA~dp~~~rlfVTGK~Wp~~~ 260 (268)
T 3nok_A 188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAV-LNGIAVEPGSGRIFMTGKLWPRLF 260 (268)
T ss_dssp EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCC-EEEEEECTTTCCEEEEETTCSEEE
T ss_pred Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCc-eEEEEEcCCCCEEEEeCCCCCceE
Confidence 77 78766666568899999999999988887542211 0111222 235699997778888876555444
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.55 E-value=6.4e-06 Score=83.49 Aligned_cols=185 Identities=8% Similarity=0.049 Sum_probs=126.1
Q ss_pred CCCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeE--EEEEeCCCCCEEEEEECCCcEEEEEcccceE
Q 001336 806 EDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAAT--FLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV 882 (1097)
Q Consensus 806 ~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~--~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~ 882 (1097)
......+.|+. +.+..+.+ +|.|+++|+++++.+..+ -..... .+++. ++++.+....++.+.+||..+.+.
T Consensus 54 ~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 54 NAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp TCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEE
T ss_pred ccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcE
Confidence 34457888873 45555555 789999999999998887 233333 35554 456666666789999999999999
Q ss_pred EEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCC
Q 001336 883 KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HET 961 (1097)
Q Consensus 883 ~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~ 961 (1097)
+.++..- ..-..++ +|++.|+.+..++.|.++|.++.+.... +.+...... ...+..+.|. +|+..+.. .++
T Consensus 129 ~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~--I~V~~~g~~-v~~lNeLe~~-dG~lyanvw~s~ 201 (268)
T 3nok_A 129 ERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGA--VQVKLRGQP-VELINELECA-NGVIYANIWHSS 201 (268)
T ss_dssp EEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEE--EECEETTEE-CCCEEEEEEE-TTEEEEEETTCS
T ss_pred EEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEE--EEeCCCCcc-cccccccEEe-CCEEEEEECCCC
Confidence 9888743 2223444 5788888777788999999998764433 222211110 0234566776 67544444 578
Q ss_pred eEEEEeCCCcceeeeeeccC-----------CCCCEEEEEEecCCCEEEEEe
Q 001336 962 QIAIYEAPKLECLKQFVPRE-----------ASGPITHATYSCDSQSIYVAF 1002 (1097)
Q Consensus 962 ~v~vwd~~~~~~~~~~~~~~-----------h~~~v~~v~~s~dg~~l~s~s 1002 (1097)
.|.+.|.++++.+..+...+ -..-.+.+|++|+++.|+..+
T Consensus 202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999999999988877431 124678999999877666554
No 263
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.54 E-value=1.9e-05 Score=92.96 Aligned_cols=109 Identities=10% Similarity=0.083 Sum_probs=66.5
Q ss_pred cEEEEEcC-CCeEEEEEc-CCCCceeeecCCCCc-----------eEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCe
Q 001336 485 QFIFSTAT-DGKIKAWLY-DNLGSRVDYDAPGHS-----------STMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 551 (1097)
Q Consensus 485 ~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~~-----------v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 551 (1097)
..++.++. ++.|..+|. .+++.+......... ...+++ .+..+++++. +..|..+|..+|+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~ 136 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQA----NGHLLALDAKTGK 136 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeC----CCEEEEEECCCCC
Confidence 35556666 778888888 777777665543210 011222 3455666543 4479999999998
Q ss_pred eeEEecCCCC---cceE-EEEEcCCCCEEEEEeC------CCcEEEEECCCCceEEEEec
Q 001336 552 VKRTYHGLGK---RSVG-VVQFDTTKNRFLAAGD------EFMIKFWDMDNVNLLASIDA 601 (1097)
Q Consensus 552 ~~~~~~~~~~---~~v~-~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~ 601 (1097)
.+-.+..... ..+. .... .+..+++++. ++.|+.+|..+|+.+-.+..
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 8876653220 0111 1111 1345666654 79999999999999988764
No 264
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.54 E-value=2.2e-05 Score=85.47 Aligned_cols=238 Identities=13% Similarity=0.044 Sum_probs=147.1
Q ss_pred CeeEEEEccCCCEEEEEe-CCeEEEEEcCCCceeEEeC--C------------------CCCCeEEEEEeCCCCCEEEEE
Q 001336 808 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFM--P------------------PPPAATFLAFHPQDNNIIAIG 866 (1097)
Q Consensus 808 ~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~--~------------------~~~~i~~l~~sp~~~~~la~g 866 (1097)
...+++++++|+++.++. ++.|..|+..+++.. .+. . ....+..+++.++++ .|.++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEE
Confidence 456788999999677776 789999998765432 221 0 013578899996234 55556
Q ss_pred ECCCcEEEEEcccceEEEEec----c-cccCeEEEEEec-CCCEEEEEeC-----------------CCcEEEEEcCCCc
Q 001336 867 MEDSSIQIYNVRVDEVKTKLK----G-HQKRITGLAFSN-TLNVLVSSGA-----------------DSQLCVWSTDGWE 923 (1097)
Q Consensus 867 ~~dg~v~vwd~~~~~~~~~l~----~-h~~~V~~l~~s~-dg~~l~s~~~-----------------Dg~i~iwd~~~~~ 923 (1097)
...+.|..+|..+++. ..+. + .......+++.+ +|.+.++... ++.|..||..+++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 5556688888776542 2221 1 113467899999 9987776533 3668888877654
Q ss_pred ccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE--eCCeEEEEeCCCcc--eeeeeeccCCCCCEEEEEEecCCCEEE
Q 001336 924 KQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLE--CLKQFVPREASGPITHATYSCDSQSIY 999 (1097)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~--~d~~v~vwd~~~~~--~~~~~~~~~h~~~v~~v~~s~dg~~l~ 999 (1097)
... ..... .....++|++||++|.++ ..+.|.+|++.... ....+.. ..+ ...+++.++|++.+
T Consensus 177 ~~~--~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 177 TTL--LLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWV 244 (322)
T ss_dssp EEE--EEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEE
T ss_pred EEE--eccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEE
Confidence 221 11111 224679999999977765 45789999987532 1112211 123 78899999999777
Q ss_pred EEec----------CCeEEEEeCCCCceeeeeCCCCcCCCCC-CCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCCC
Q 001336 1000 VAFE----------EGSVGVLTASTLRLRCRINPTAYLPTNP-SLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1068 (1097)
Q Consensus 1000 s~s~----------Dg~v~vwd~~~~~~~~~~~~~~~~~~~h-~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~~ 1068 (1097)
+... .+.|..++. .++.+..+..+. +. ...+..+ ++ . ++.++++....+.|..+++....
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~----g~~~~~~~~~--~~-~-~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPP----PFAGEHFEQI--QE-H-DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCT----TTTTSCCCEE--EE-E-TTEEEEECSSCSEEEEEEC----
T ss_pred EecCcccccccCCCccEEEEECC-CCCEEEEEECCC----CCccccceEE--EE-e-CCEEEEeecCCCceEEEeccccc
Confidence 6654 467888886 467666655322 11 1223444 33 2 56777777778899999987554
Q ss_pred c
Q 001336 1069 G 1069 (1097)
Q Consensus 1069 ~ 1069 (1097)
.
T Consensus 316 ~ 316 (322)
T 2fp8_A 316 N 316 (322)
T ss_dssp -
T ss_pred C
Confidence 3
No 265
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.52 E-value=2.8e-05 Score=78.30 Aligned_cols=211 Identities=11% Similarity=0.108 Sum_probs=137.8
Q ss_pred ceeEEeCCCCC--CeEEEEEeCCCCCEEEEEECCC--cEEEEEcccceEEEEecccccCeEEEEEecCCCEEE-EEeCCC
Q 001336 838 KTMTTFMPPPP--AATFLAFHPQDNNIIAIGMEDS--SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLV-SSGADS 912 (1097)
Q Consensus 838 ~~~~~~~~~~~--~i~~l~~sp~~~~~la~g~~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~-s~~~Dg 912 (1097)
+.+.++ .|+. -...+.|++ +.++.+.+.+| .|+.+|+.+++.+..+..... ........++..|. ..-.++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCC
Confidence 445566 3554 367899985 55666666654 899999999999887764332 23222333344444 455688
Q ss_pred cEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEEEEeCCCcceeeeeeccCCC---CCEEE
Q 001336 913 QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPREAS---GPITH 988 (1097)
Q Consensus 913 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~---~~v~~ 988 (1097)
.+.++|.++.+.... +.. +. ....+.+|+..|+++ .++.|.++|.++.+.+..+....+. ..++.
T Consensus 86 ~v~v~D~~tl~~~~t--i~~--~~-------~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 86 EGFVYDLATLTPRAR--FRY--PG-------EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp EEEEEETTTTEEEEE--EEC--SS-------CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEEEECCcCcEEEE--EeC--CC-------CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence 999999998664332 221 11 123445677777775 5688999999999998888754332 34566
Q ss_pred EEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCC-----CCceeeEEEEEcCCCCCEEEEEecCCcEEEEe
Q 001336 989 ATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNP-----SLRVYPLVIAGNPTDPNQFALGLTDGGVYIIE 1063 (1097)
Q Consensus 989 v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~ 1063 (1097)
+.+. +|+..+..-.+..|.+.|..+|+.+..+..+...+... ...| .-.|+|+|+.+.+++||-.=-.++--.
T Consensus 155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~v-lNGIA~d~~~~~lfVTGK~wp~~~~v~ 232 (243)
T 3mbr_X 155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDV-LNGIAFDAEHDRLFVTGKRWPMLYEIR 232 (243)
T ss_dssp EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSC-EEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCc-eEEEEEcCCCCEEEEECCCCCcEEEEE
Confidence 7766 77766666568899999999999998888664433221 1222 235699997677777777666555444
Q ss_pred cC
Q 001336 1064 PL 1065 (1097)
Q Consensus 1064 ~~ 1065 (1097)
+.
T Consensus 233 ~~ 234 (243)
T 3mbr_X 233 LT 234 (243)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 266
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.51 E-value=1.1e-05 Score=98.67 Aligned_cols=248 Identities=11% Similarity=0.003 Sum_probs=136.3
Q ss_pred CeeEEEEc-cCCCeEEEEEeCCC----eEEEEEcCCC-ceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCC
Q 001336 321 AVKSMDFH-PVQQILLVVGTNMG----DVMLWEVGSR-ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT 394 (1097)
Q Consensus 321 ~V~~v~fs-pdg~~lla~gs~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~ 394 (1097)
.+...+|| |||++|+.+.+.+| .|.++|+.++ +.+.. . +. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence 56789999 99998766665544 4999999988 63221 0 10 1134688999999
Q ss_pred EEEEEECC-----CEEEEEEccCCeeeeeeeeee-cccCcEEEEEEecCCCcEEEEEEe-CCCcEEEEECCCCc-ee--E
Q 001336 395 LFGVAYSK-----HIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGT-KQ--Y 464 (1097)
Q Consensus 395 ~las~~~d-----g~i~iwd~~~~~~~~~~~~l~-~h~~~V~~l~~s~d~~~~~l~s~s-~d~~i~iwd~~~~~-~~--~ 464 (1097)
.|+....| ..|.++++.+++.... ..+. ........+.|||||+.+++.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 98888765 3688888877642111 1122 223446788999999953222222 23468889988762 22 3
Q ss_pred Ee-ecCCcCeEEEeecccCCccEEEEEcCC----CeEEEEEcCCCCceee-ecCCCC--ceEEEEEccCCCEEEEeeeCC
Q 001336 465 IF-EGHESPVYSICPHHKENIQFIFSTATD----GKIKAWLYDNLGSRVD-YDAPGH--SSTMMAYSADGARLFSCGTNK 536 (1097)
Q Consensus 465 ~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~-~~~~~~--~v~~~~~s~~~~~l~~~~~~~ 536 (1097)
.+ .+..+...++.|+ .++.+++....+ ..|..+++.+...... +..+.. .+..+.+ .++.|+.....
T Consensus 313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~- 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRR- 387 (751)
T ss_dssp ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEE-
T ss_pred EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEe-
Confidence 33 3344555555432 233444554443 3566666654222122 222222 3444444 45666555432
Q ss_pred CCCceEEEEeC-------CCCeeeEEecCCCCcceEEEEE----cCCCC-EEEEEeC---CCcEEEEECCCCce
Q 001336 537 EGESYLVEWNE-------SEGAVKRTYHGLGKRSVGVVQF----DTTKN-RFLAAGD---EFMIKFWDMDNVNL 595 (1097)
Q Consensus 537 ~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~~~~----~~~~~-~l~~~~~---dg~i~iwd~~~~~~ 595 (1097)
++...|.++|+ .+++..+.+.......+..+.+ ++++. .+++.+. -..++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34567888886 3443133333222112223322 34554 4444432 24678888877764
No 267
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.50 E-value=4.8e-05 Score=89.22 Aligned_cols=111 Identities=7% Similarity=0.024 Sum_probs=68.0
Q ss_pred cEEEEEcC-CCeEEEEEc-CCCCceeeecCCCCc-----------eEEEEEccCCCE----EEEeeeCCCCCceEEEEeC
Q 001336 485 QFIFSTAT-DGKIKAWLY-DNLGSRVDYDAPGHS-----------STMMAYSADGAR----LFSCGTNKEGESYLVEWNE 547 (1097)
Q Consensus 485 ~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~~-----------v~~~~~s~~~~~----l~~~~~~~~~~~~i~~wd~ 547 (1097)
..++.++. ++.|.-+|. ++++.+......... ...++++|.+.. +++++. +..|..+|.
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~----dg~l~AlDa 138 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL----DGNVAALNA 138 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT----TSEEEEEET
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC----CCEEEEEEC
Confidence 35666666 777888888 777777766543321 123455443333 666543 447999999
Q ss_pred CCCeeeEEecCCCC---cceE-EEEEcCCCCEEEEEe------CCCcEEEEECCCCceEEEEec
Q 001336 548 SEGAVKRTYHGLGK---RSVG-VVQFDTTKNRFLAAG------DEFMIKFWDMDNVNLLASIDA 601 (1097)
Q Consensus 548 ~~~~~~~~~~~~~~---~~v~-~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~ 601 (1097)
.+|+.+-....... ..+. ...+. + ..+++++ .+|.|+.+|..+|+.+-.+..
T Consensus 139 ~TG~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 139 ETGETVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp TTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCCCEEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 99988766543220 0111 11111 3 3555554 379999999999999887764
No 268
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.49 E-value=0.00023 Score=83.64 Aligned_cols=379 Identities=11% Similarity=0.034 Sum_probs=199.1
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeecCCcCe---------EEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecC
Q 001336 442 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV---------YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA 512 (1097)
Q Consensus 442 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v---------~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 512 (1097)
.++.++.++.|.-+|..+|+.+-++....... ..+++ .+..++.++.|+.|..+|.++++.......
T Consensus 70 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred EEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 35555554459999999999987775432210 11122 125678888899999999999998877654
Q ss_pred CCC----ceE-EEEEcc---CCC-EEEEeeeCC--CCCceEEEEeCCCCeeeEEecCCCC--------------------
Q 001336 513 PGH----SST-MMAYSA---DGA-RLFSCGTNK--EGESYLVEWNESEGAVKRTYHGLGK-------------------- 561 (1097)
Q Consensus 513 ~~~----~v~-~~~~s~---~~~-~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~-------------------- 561 (1097)
... .+. ...+.. +|+ .+++++... ..++.|.-+|..+|+.+-.......
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 331 111 111111 233 455443211 1245799999999987765543210
Q ss_pred --------------------cceEEEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCceEE
Q 001336 562 --------------------RSVGVVQFDTTKNRFLAAGD--------------------E----FMIKFWDMDNVNLLA 597 (1097)
Q Consensus 562 --------------------~~v~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~ 597 (1097)
..-...++.|+...++.+.. | +.|..+|..+|+.+-
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W 305 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence 00012466677778877663 2 589999999999998
Q ss_pred EEecCCCCC----Ccce-EEEc---CCCC---EEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCccc
Q 001336 598 SIDADGGLQ----ASPC-IRFN---KEGI---LLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIG 666 (1097)
Q Consensus 598 ~~~~~~~~~----~v~~-v~~s---~~~~---~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1097)
.++...+.. .+.. +.+. .+|+ .++.++.+|.++++|..+|. .+............ ..+
T Consensus 306 ~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~-~lw~~~~~~~~~~~---~~~------- 374 (582)
T 1flg_A 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK-LQNAFPFVDNITWA---SHI------- 374 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC-EEEEEESSSCCCSE---EEE-------
T ss_pred EEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCC-EecccccccCcccc---ccc-------
Confidence 876532211 1111 2222 4563 78889999999999999994 44333221100000 000
Q ss_pred ccccCccccccccccccccccccccCCCCCCCccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEE
Q 001336 667 TFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLI 746 (1097)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 746 (1097)
.+... .+.. ...+.+. .+ .. .+ ......+..|.......-..++
T Consensus 375 ---------~~~~g---~p~~-~~~~~~~--------~~-~~-~~-------------~~~~~~~~~P~~~Gg~~w~~~a 418 (582)
T 1flg_A 375 ---------DLKTG---RPVE-REGQRPP--------LP-EP-GQ-------------KHGKAVEVSPPFLGGKNWNPMA 418 (582)
T ss_dssp ---------CTTTC---CEEE-CTTCSCC--------CC-CT-TC-------------SSCCCEEESSCTTCSSCSSCCE
T ss_pred ---------cccCC---CEeE-ccccCCc--------cc-cc-cc-------------cCCCceEECcCCccccCCCCce
Confidence 00000 0000 0000000 00 00 00 0000011112111111123568
Q ss_pred EccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCCEEEEEeC
Q 001336 747 YTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASG 826 (1097)
Q Consensus 747 ~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~sd 826 (1097)
++|+...+++...+-...++.... ....+ ....-..+...|++. ..+
T Consensus 419 ~dp~~g~~yv~~~~~~~~~~~~~~------------------~~~~g-----------~~~~g~~~~~~p~~~----~~~ 465 (582)
T 1flg_A 419 YSQDTGLFYVPANHWKEDYWTEEV------------------SYTKG-----------SAYLGMGFRIKRMYD----DHV 465 (582)
T ss_dssp ECTTTCCEEEEEECEEEEEEECCC------------------CCCTT-----------SCCCCEEEEEEESCS----SCS
T ss_pred ECCCCCEEEEechhcceeeecccc------------------cccCC-----------CceeccceeecCCCC----CCc
Confidence 888887777776654444442210 00001 111111122223310 115
Q ss_pred CeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCe-EEEEEecCCCEE
Q 001336 827 GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRI-TGLAFSNTLNVL 905 (1097)
Q Consensus 827 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~~l 905 (1097)
|.|.-||+.+++.+....... .+..-.... .+.++++|+.||.++.||.++|+.+.+++...+.+ .-+.+..+|+..
T Consensus 466 G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY 543 (582)
T 1flg_A 466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS-CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ceEEEEECCCCCEEEEecCCC-CCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence 789999999999887765322 221111122 35578889999999999999999998887644322 225666788644
Q ss_pred E
Q 001336 906 V 906 (1097)
Q Consensus 906 ~ 906 (1097)
+
T Consensus 544 v 544 (582)
T 1flg_A 544 L 544 (582)
T ss_dssp E
T ss_pred E
Confidence 4
No 269
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.46 E-value=4.7e-05 Score=82.87 Aligned_cols=252 Identities=9% Similarity=0.008 Sum_probs=146.9
Q ss_pred ceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCC------CCCCCCeeEEEE
Q 001336 741 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISD------TNPEDAVPCFAL 814 (1097)
Q Consensus 741 ~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~------~~h~~~v~~l~~ 814 (1097)
...++++.++|+.+.++..++.|..|+...... ..|.......-.....+ ......+..+++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~ 87 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF------------VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY 87 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCE------------EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCce------------EEEecccccccccccccccchhccccCCCCceEEE
Confidence 345788899998788888888888886543211 01100000000000000 001134788999
Q ss_pred cc-CCCEEEEEeCCeEEEEEcCCCceeEEe---CC-CCCCeEEEEEeCCCCCEEEEEEC-----------------CCcE
Q 001336 815 SK-NDSYVMSASGGKISLFNMMTFKTMTTF---MP-PPPAATFLAFHPQDNNIIAIGME-----------------DSSI 872 (1097)
Q Consensus 815 s~-dg~~la~~sdg~i~iwd~~~~~~~~~~---~~-~~~~i~~l~~sp~~~~~la~g~~-----------------dg~v 872 (1097)
++ +|+++++...+.|..+|..+++..... .+ .......+++.+.++++.++-.. ++.|
T Consensus 88 ~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v 167 (322)
T 2fp8_A 88 NLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRL 167 (322)
T ss_dssp ETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred cCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceE
Confidence 98 666555444666888887765422111 11 11346789998723555554322 3678
Q ss_pred EEEEcccceEEEEecccccCeEEEEEecCCCEEEEE-eCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCC
Q 001336 873 QIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS-GADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD 951 (1097)
Q Consensus 873 ~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~-~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 951 (1097)
..||..+++....... ......++|+++|+.|+.+ ..++.|.+|++..........+.... . ...++++++
T Consensus 168 ~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~------g-P~gi~~d~~ 239 (322)
T 2fp8_A 168 IKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP------N-PGNIKRNAD 239 (322)
T ss_dssp EEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS------S-EEEEEECTT
T ss_pred EEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC------C-CCCeEECCC
Confidence 8888877764332221 2334679999999866554 55688999998864322222222111 2 567899999
Q ss_pred CcEEEEE-e----------CCeEEEEeCCCcceeeeeeccC-C-CCCEEEEEEecCCCEEEEEecCCeEEEEeCCC
Q 001336 952 QTHLLAV-H----------ETQIAIYEAPKLECLKQFVPRE-A-SGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1014 (1097)
Q Consensus 952 g~~l~~~-~----------d~~v~vwd~~~~~~~~~~~~~~-h-~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~ 1014 (1097)
|++.++. . .+.|..+|.+ ++.+..+.... . -..++++++ .+++++++....+.|.++++..
T Consensus 240 G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 240 GHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp SCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 9876664 3 3678888874 67666665321 1 245667776 4677777766788999998764
No 270
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.45 E-value=1.6e-05 Score=96.09 Aligned_cols=280 Identities=7% Similarity=-0.008 Sum_probs=156.1
Q ss_pred eEEEEcc-CCCeEEEEEeCCC-----------eEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEc
Q 001336 323 KSMDFHP-VQQILLVVGTNMG-----------DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 390 (1097)
Q Consensus 323 ~~v~fsp-dg~~lla~gs~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 390 (1097)
.++++.| +|+ |++.|+.+. .+.+||..+++...... ....+.....++++.
T Consensus 189 ~~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~~ 251 (656)
T 1k3i_A 189 AAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISMD 251 (656)
T ss_dssp SEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEEC
T ss_pred eeEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc----------------cCCCCCCccccccCC
Confidence 3677788 666 667776432 58889988876432110 012233344567888
Q ss_pred cCCCEEEEEEC-CCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEe-CC-----CcEEEEECCCCcee
Q 001336 391 PDGTLFGVAYS-KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-ED-----RVIKVWDAVTGTKQ 463 (1097)
Q Consensus 391 pd~~~las~~~-dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s-~d-----~~i~iwd~~~~~~~ 463 (1097)
.+++++++|+. +..+.+||..+++-.. ...+.... .-.+++..++++ +++.|+ .+ ..+.+||..+++..
T Consensus 252 ~~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~~~~R-~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 252 GNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVAR-GYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp TTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSCC-SSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CCCCEEEeCCCCCCceEEecCcCCceeE-CCCCCccc-cccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce
Confidence 99999999984 4589999998875322 22222111 123455667888 777777 44 57999999887654
Q ss_pred EEe----ecCCcCeEEEeecccCCccEEEEEcCC---------CeEEEEEcCCCCceeeecCCC---------CceEEEE
Q 001336 464 YIF----EGHESPVYSICPHHKENIQFIFSTATD---------GKIKAWLYDNLGSRVDYDAPG---------HSSTMMA 521 (1097)
Q Consensus 464 ~~~----~~h~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~---------~~v~~~~ 521 (1097)
..- ......-....+ ..++..++.++.+ ..+..||..+........... ..-.++.
T Consensus 328 ~~~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EETTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eCCCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 320 000000000111 1223444555444 456778877654322211111 1223444
Q ss_pred Ec-cCCCEEEEeeeCCC----CCc---eEEEEeCCCCeeeEEe--cCCCCcceEEEEEcCCCCEEEEEeCC---------
Q 001336 522 YS-ADGARLFSCGTNKE----GES---YLVEWNESEGAVKRTY--HGLGKRSVGVVQFDTTKNRFLAAGDE--------- 582 (1097)
Q Consensus 522 ~s-~~~~~l~~~~~~~~----~~~---~i~~wd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d--------- 582 (1097)
+. .+++.+++++.+.. ... .+.+||..+..-.... .......-.+.+..|+++.++.|+.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 43 36777777764321 011 5788888876554433 22222123345667899999999854
Q ss_pred --CcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEEC
Q 001336 583 --FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN 625 (1097)
Q Consensus 583 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~ 625 (1097)
..+.+||..+.+-...-..........+..+.+++++++.|+.
T Consensus 486 ~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 486 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999987654332111111112234556789999999885
No 271
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.43 E-value=0.00023 Score=76.58 Aligned_cols=229 Identities=17% Similarity=0.133 Sum_probs=139.2
Q ss_pred CCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeC-CC-cEEEEECCC
Q 001336 382 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DR-VIKVWDAVT 459 (1097)
Q Consensus 382 ~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~-d~-~i~iwd~~~ 459 (1097)
.....++|+++|+++++-..++.|..||..++. .. . + .....+..+++.++|+ ++++... ++ .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~-~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QI-H--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EE-E--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EE-E--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 467789999999977776688999999887642 22 1 1 1234688999999998 4554433 33 477778778
Q ss_pred CceeEEeec-CCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceee-e-------c--CCCCceEEEEEccCCCE
Q 001336 460 GTKQYIFEG-HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-Y-------D--APGHSSTMMAYSADGAR 528 (1097)
Q Consensus 460 ~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~-------~--~~~~~v~~~~~s~~~~~ 528 (1097)
++....... .......++. ..++..+++-..++.|.++|......... . . ..-.....+ +++++.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~--~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITP--LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEE--SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccc--cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 875433221 1222344444 23334455555688888888764321111 0 0 111134455 888887
Q ss_pred EEEeeeCCCCCceEEEEeCCC-Cee--eEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCC
Q 001336 529 LFSCGTNKEGESYLVEWNESE-GAV--KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGL 605 (1097)
Q Consensus 529 l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 605 (1097)
|+.+.. ....|..+++.. ++. ...+... .....+++.++|+++++....+.|.+++.. ++...........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence 777643 345799999864 321 1122111 134558899999887777778899999975 6553322222223
Q ss_pred CCcceEEEc---CCCCEEEEEECCC
Q 001336 606 QASPCIRFN---KEGILLAVSTNDN 627 (1097)
Q Consensus 606 ~~v~~v~~s---~~~~~l~s~~~dg 627 (1097)
....+++|. |++..|++++..+
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCceEEEEecccCCCCEEEEECCCC
Confidence 457899998 8877777766543
No 272
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.43 E-value=0.00099 Score=78.29 Aligned_cols=205 Identities=12% Similarity=-0.005 Sum_probs=123.2
Q ss_pred CCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCc-------EEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001336 393 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGS-------VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI 465 (1097)
Q Consensus 393 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~-------V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 465 (1097)
+..|++++.++.|.-+|..+|+.+-+.. ....... -..++. .+. .++.++.|+.|..+|.++|+.+-.
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~g~a~--~~~--~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYN-HRLPDDIRPCCDVVNRGAAI--YGD--KVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEE-CCCCTTCCCSSCSCCCCCEE--ETT--EEEEEETTTEEEEEESSSCCEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEc-CCCCcccccccccCCCccEE--ECC--EEEEEeCCCEEEEEECCCCCEEee
Confidence 4455566664458889999998765432 1111000 011222 234 578888999999999999999876
Q ss_pred eecCCc----CeEE-Eeeccc-CCcc-EEEEEc------CCCeEEEEEcCCCCceeeecCCCCc----------------
Q 001336 466 FEGHES----PVYS-ICPHHK-ENIQ-FIFSTA------TDGKIKAWLYDNLGSRVDYDAPGHS---------------- 516 (1097)
Q Consensus 466 ~~~h~~----~v~~-~~~~~~-~~~~-~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~---------------- 516 (1097)
...... .+.+ -.+... .+|+ .++.++ .++.|..+|.++++.+.........
T Consensus 143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g 222 (582)
T 1flg_A 143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK 222 (582)
T ss_dssp EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccc
Confidence 653321 1110 011111 1222 566654 3789999999988877654332100
Q ss_pred -------------------------eEEEEEccCCCEEEEeeeCC------------------C--CCceEEEEeCCCCe
Q 001336 517 -------------------------STMMAYSADGARLFSCGTNK------------------E--GESYLVEWNESEGA 551 (1097)
Q Consensus 517 -------------------------v~~~~~s~~~~~l~~~~~~~------------------~--~~~~i~~wd~~~~~ 551 (1097)
-..++++|+...++.+..+. + -...|..+|..+|+
T Consensus 223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~ 302 (582)
T 1flg_A 223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGE 302 (582)
T ss_dssp CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCC
T ss_pred cccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCC
Confidence 02356677777777665321 1 12579999999999
Q ss_pred eeEEecCCCC--------cceEEEEEc-CCCC---EEEEEeCCCcEEEEECCCCceEEEEecC
Q 001336 552 VKRTYHGLGK--------RSVGVVQFD-TTKN---RFLAAGDEFMIKFWDMDNVNLLASIDAD 602 (1097)
Q Consensus 552 ~~~~~~~~~~--------~~v~~~~~~-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 602 (1097)
.+-.++.... .....+... .+|+ .++.++.+|.++++|..+|+++......
T Consensus 303 ~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~ 365 (582)
T 1flg_A 303 VKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp EEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred EEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccc
Confidence 8887754211 011112221 4663 7788889999999999999999887653
No 273
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.43 E-value=3.7e-05 Score=77.41 Aligned_cols=188 Identities=10% Similarity=0.118 Sum_probs=126.3
Q ss_pred CCCeeEEEEccCCCEEEEEe-C--CeEEEEEcCCCceeEEeCCCCCC-eEEEEEeCCCCCEEEEEECCCcEEEEEcccce
Q 001336 806 EDAVPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMTTFMPPPPA-ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE 881 (1097)
Q Consensus 806 ~~~v~~l~~s~dg~~la~~s-d--g~i~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~ 881 (1097)
......+.|+. +.+..+.+ + +.|+.+|+++++.+..+...... --.+++. ++++.+....++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 45567899986 55555554 3 48999999999999887643322 2334554 45566666678999999999999
Q ss_pred EEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eC
Q 001336 882 VKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HE 960 (1097)
Q Consensus 882 ~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d 960 (1097)
.+.++.... .-..+ .+|+..|+.+..++.|.++|..+.+.... +.+...... ...+..+.+. +|+..+.. .+
T Consensus 97 ~~~ti~~~~-~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~--I~V~~~g~~-~~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 97 PRARFRYPG-EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGS--IKVTAGGRP-LDNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp EEEEEECSS-CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEE--EECEETTEE-CCCEEEEEEE-TTEEEEEETTT
T ss_pred EEEEEeCCC-CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEE--EEEccCCcc-cccceeeEEe-CCEEEEEECCC
Confidence 998887433 22344 45777776666688899999998664432 222211100 0234455655 66644444 57
Q ss_pred CeEEEEeCCCcceeeeeeccC-----------CCCCEEEEEEecCCCEEEEEec
Q 001336 961 TQIAIYEAPKLECLKQFVPRE-----------ASGPITHATYSCDSQSIYVAFE 1003 (1097)
Q Consensus 961 ~~v~vwd~~~~~~~~~~~~~~-----------h~~~v~~v~~s~dg~~l~s~s~ 1003 (1097)
..|.+.|.++++.+..+...+ -..-.+.++++|+++.|+..+.
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 899999999999998877432 1246789999998877766553
No 274
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.42 E-value=0.00018 Score=77.47 Aligned_cols=228 Identities=11% Similarity=-0.013 Sum_probs=138.1
Q ss_pred cceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCCC
Q 001336 740 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS 819 (1097)
Q Consensus 740 ~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 819 (1097)
.....++++++|+.+++-..++.|..|+... +...... ....+..++++++|+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g----------------------~~~~~~~-----~~~~p~gia~~~dG~ 84 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG----------------------NQQIHAT-----VEGKVSGLAFTSNGD 84 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC----------------------CEEEEEE-----CSSEEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC----------------------ceEEEEe-----CCCCceeEEEcCCCc
Confidence 4567899999999777766788888775431 1111111 124578899999999
Q ss_pred EEEEEe-CC--eEEEEEcCCCceeEEeCC-CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceE-EEEec-------
Q 001336 820 YVMSAS-GG--KISLFNMMTFKTMTTFMP-PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV-KTKLK------- 887 (1097)
Q Consensus 820 ~la~~s-dg--~i~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~-~~~l~------- 887 (1097)
++++.. .+ .|..++..+++....... .......++..+ ++..+++-..++.|+++|..+++. +....
T Consensus 85 l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~ 163 (306)
T 2p4o_A 85 LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSN 163 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred EEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccccc
Confidence 766654 22 466777777765433321 122345566665 555555544688899999876531 21111
Q ss_pred --ccccCeEEEEEecCCCEEEE-EeCCCcEEEEEcCC-CcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCe
Q 001336 888 --GHQKRITGLAFSNTLNVLVS-SGADSQLCVWSTDG-WEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQ 962 (1097)
Q Consensus 888 --~h~~~V~~l~~s~dg~~l~s-~~~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~ 962 (1097)
..-.....+ ++|++.|+. -...+.|..+++.. ++......+... .....++++++|++.++. ..+.
T Consensus 164 ~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-------~~P~gi~vd~dG~l~va~~~~~~ 234 (306)
T 2p4o_A 164 SESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-------TNIDDFAFDVEGNLYGATHIYNS 234 (306)
T ss_dssp TTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-------CCCSSEEEBTTCCEEEECBTTCC
T ss_pred ccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-------CCCCCeEECCCCCEEEEeCCCCe
Confidence 111234455 888876654 44567899999875 332222222111 135679999999876663 5688
Q ss_pred EEEEeCCCcceeeeeeccCCCCCEEEEEEe---cCCCEEEEEecCC
Q 001336 963 IAIYEAPKLECLKQFVPREASGPITHATYS---CDSQSIYVAFEEG 1005 (1097)
Q Consensus 963 v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s---~dg~~l~s~s~Dg 1005 (1097)
|.+++.+ ++..............++++|. +|++.|+.++..+
T Consensus 235 V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 235 VVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 9999976 5543221111223578999999 8988877666543
No 275
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.34 E-value=0.00079 Score=72.63 Aligned_cols=207 Identities=9% Similarity=-0.036 Sum_probs=130.2
Q ss_pred CCCeeEEEEccCCCEEEEEe--CCeEEEEEcCC----CceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEccc
Q 001336 806 EDAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV 879 (1097)
Q Consensus 806 ~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~ 879 (1097)
...+.+++|++++..|..+. .+.|..+++.+ ......+.........+++++.++.++++-...+.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34578999999877777766 58899999876 2222223323345678999873455555556778999999875
Q ss_pred ceEEEEecccccCeEEEEEecCCCEEEEEeCC--CcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE
Q 001336 880 DEVKTKLKGHQKRITGLAFSNTLNVLVSSGAD--SQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA 957 (1097)
Q Consensus 880 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~ 957 (1097)
......+.........+++.|.+..|+.+... +.|...+++.... ..+. ... . .....+++++++..|..
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~---~~~~-~~~-~---~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLV-TEN-I---QWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EEEE-CSS-C---SCEEEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe---EEEE-ECC-C---CCceEEEEeccCCEEEE
Confidence 44333333333567899999977666655543 6788888765321 1111 111 1 34678999998887777
Q ss_pred E--eCCeEEEEeCCCcceeeeeec-cCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeC
Q 001336 958 V--HETQIAIYEAPKLECLKQFVP-REASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRIN 1022 (1097)
Q Consensus 958 ~--~d~~v~vwd~~~~~~~~~~~~-~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~ 1022 (1097)
+ ..+.|..+|++... ...+.. ...-.....+++. .+.++++-...+.|..++..+++.+..+.
T Consensus 181 ~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 181 VDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 5 45789999997433 333321 1223456788885 45556666667899999987776554443
No 276
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.32 E-value=0.0017 Score=70.41 Aligned_cols=279 Identities=11% Similarity=0.054 Sum_probs=153.1
Q ss_pred ccceEEEEEccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccCC
Q 001336 739 AMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND 818 (1097)
Q Consensus 739 ~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 818 (1097)
...+.++.|.+++..+++ +.+|.|... .+. | +-|... ..... .....+.++.|++ +
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i~~s-~Dg------G--------~tW~~~-----~~~~~--~~~~~~~~i~~~~-~ 90 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATLMET-RDG------G--------QTWEPR-----TLVLD--HSDYRFNSVSFQG-N 90 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEEEEE-SST------T--------SSCEEC-----CCCCS--CCCCEEEEEEEET-T
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeEEEe-CCC------C--------CCCeEC-----CCCCC--CCCccEEEEEecC-C
Confidence 346889999888877774 456654321 110 0 011111 00001 1345688999986 5
Q ss_pred CEEEEEeCCeEEEEEcCCCceeEEeC---CCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceE-EEEecccccCeE
Q 001336 819 SYVMSASGGKISLFNMMTFKTMTTFM---PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV-KTKLKGHQKRIT 894 (1097)
Q Consensus 819 ~~la~~sdg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~-~~~l~~h~~~V~ 894 (1097)
..++++..+.|.. ..+.++.-.... .+...+..+.+.+ ++.+++++ .+|.|.. ..+.|+. ......+...+.
T Consensus 91 ~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~ 166 (327)
T 2xbg_A 91 EGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMR 166 (327)
T ss_dssp EEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEE
T ss_pred eEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceE
Confidence 6666666775543 333333222222 2335577888876 66666655 4564432 1122321 112234556789
Q ss_pred EEEEecCCCEEEEEeCCCcEEE-EEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcce
Q 001336 895 GLAFSNTLNVLVSSGADSQLCV-WSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLEC 973 (1097)
Q Consensus 895 ~l~~s~dg~~l~s~~~Dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~ 973 (1097)
.+++.+++.+++.+. +|.+.. +|- .++ .+..+.... . ..+..+.+++++..++++.+|.+++.+.+.++.
T Consensus 167 ~~~~~~~~~~~~~g~-~G~~~~S~d~-gG~--tW~~~~~~~--~---~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~t 237 (327)
T 2xbg_A 167 NLNRSPSGEYVAVSS-RGSFYSTWEP-GQT--AWEPHNRTT--S---RRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSEN 237 (327)
T ss_dssp EEEECTTSCEEEEET-TSSEEEEECT-TCS--SCEEEECCS--S---SCEEEEEECTTSCEEEEETTTEEEEEETTEEEE
T ss_pred EEEEcCCCcEEEEEC-CCcEEEEeCC-CCC--ceeECCCCC--C---CccceeEECCCCCEEEEeCCceEEEecCCCCCe
Confidence 999999988887664 454443 332 111 122222211 1 457889999999988888888888775443443
Q ss_pred eeeeecc--CCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEE
Q 001336 974 LKQFVPR--EASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFA 1051 (1097)
Q Consensus 974 ~~~~~~~--~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~ 1051 (1097)
-..+... .+...+.++++.+++.+++++. ++.| .+..+.|+....+.... .+...++.+ .|.+ +..++
T Consensus 238 W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~----~~~~~~~~v--~~~~--~~~~~ 307 (327)
T 2xbg_A 238 WGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVK----KVPSNFYKI--LFFS--PDQGF 307 (327)
T ss_dssp ECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGT----TSSSCCCEE--EEEE--TTEEE
T ss_pred eEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccC----CCCCCeEEE--EEEC--CCceE
Confidence 3333211 1234689999998888777654 6766 45556665544333111 112345655 4443 45677
Q ss_pred EEecCCcEEEEec
Q 001336 1052 LGLTDGGVYIIEP 1064 (1097)
Q Consensus 1052 s~~~Dg~v~~W~~ 1064 (1097)
+++.+|.|.-++-
T Consensus 308 ~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 308 ILGQKGILLRYVT 320 (327)
T ss_dssp EECSTTEEEEECC
T ss_pred EEcCCceEEEEcC
Confidence 8888997766543
No 277
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.29 E-value=0.0023 Score=70.06 Aligned_cols=248 Identities=11% Similarity=-0.009 Sum_probs=149.2
Q ss_pred CCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEE
Q 001336 320 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 399 (1097)
Q Consensus 320 ~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 399 (1097)
...+|.+..+++ +|+++ ....|+..++....... +......+..++|++.+..|...
T Consensus 34 d~~~C~~~~~~~-~ll~~--~~~~I~~i~~~g~~~~~--------------------~~~~~~~~~~l~~d~~~~~ly~~ 90 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWS 90 (349)
T ss_dssp TSSCEEESSSCC-EEEEE--CBSCEEEECTTSCCEEE--------------------EECSCSCEEEEEEETTTTEEEEE
T ss_pred CCCcccccccCc-eeEee--cccceEEEeCCCCeeEE--------------------eecCCCceEEEEEeccccEEEEE
Confidence 344566666643 34433 34457777776543321 11123458899999866666555
Q ss_pred E-CCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEee
Q 001336 400 Y-SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICP 478 (1097)
Q Consensus 400 ~-~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 478 (1097)
. ..+.|..+++.++.... . +.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++
T Consensus 91 D~~~~~I~r~~~~g~~~~~-~--~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iav 166 (349)
T 3v64_C 91 DVTLDRILRANLNGSNVEE-V--VSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL 166 (349)
T ss_dssp ETTTTEEEEEETTSCSCEE-E--ECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEE
T ss_pred eccCCceEEEecCCCCceE-E--EeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEE
Confidence 4 57789999988754222 1 2222234578899886664 4566666789999997654433333333455688888
Q ss_pred cccCCccEEEEEcCC-CeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEec
Q 001336 479 HHKENIQFIFSTATD-GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 557 (1097)
Q Consensus 479 ~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 557 (1097)
.+. ++.++++-... +.|..++++.................++++|++..|..+-. +...|..+|+........+.
T Consensus 167 dp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~~ 242 (349)
T 3v64_C 167 HPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVIS 242 (349)
T ss_dssp ETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEC
T ss_pred ecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEEe
Confidence 543 33445555455 78888888754443333333346789999998887777642 34579999987543333333
Q ss_pred CCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001336 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID 600 (1097)
Q Consensus 558 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 600 (1097)
... .....+++. .+..+++-...+.|..++..+|+.+..+.
T Consensus 243 ~~~-~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 243 QGL-PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp SSC-SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCC-CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 222 245667773 34444444477788888876776666654
No 278
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.29 E-value=0.00084 Score=73.52 Aligned_cols=205 Identities=10% Similarity=0.030 Sum_probs=131.9
Q ss_pred CCeeEEEEccCCCEEEEEe--CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEE
Q 001336 807 DAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKT 884 (1097)
Q Consensus 807 ~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~ 884 (1097)
..+..++|++.+..|.... .+.|..+++........+.........+++.+.++.++++-...+.|.+.+++......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 4478999998777777666 68899999877654444433334567899987455555665667889999987543333
Q ss_pred EecccccCeEEEEEecCCCEEEEEe-CC-CcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE--eC
Q 001336 885 KLKGHQKRITGLAFSNTLNVLVSSG-AD-SQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HE 960 (1097)
Q Consensus 885 ~l~~h~~~V~~l~~s~dg~~l~s~~-~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~--~d 960 (1097)
.+.........+++.|.+..|+.+. .+ +.|...+++..... .+ ...+. .....+++++++..|..+ ..
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~---~~-~~~~~----~~PnGla~d~~~~~lY~aD~~~ 224 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR---II-ADTHL----FWPNGLTIDYAGRRMYWVDAKH 224 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---ES-CCSSC----SCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE---EE-EECCC----CCcceEEEeCCCCEEEEEECCC
Confidence 3333445578999998666655444 34 67888887753211 11 11111 346789999988877775 45
Q ss_pred CeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeC
Q 001336 961 TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRIN 1022 (1097)
Q Consensus 961 ~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~ 1022 (1097)
+.|..++++.... ..+.. ..-.....+++ .++.++++-...+.|..++-.+|+....+.
T Consensus 225 ~~I~~~~~dG~~~-~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 225 HVIERANLDGSHR-KAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TEEEEEETTSCSC-EEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEeCCCCce-EEEEe-CCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 7899999875332 22221 22346678888 355555665567889888866766554443
No 279
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.28 E-value=0.0032 Score=68.18 Aligned_cols=282 Identities=9% Similarity=-0.010 Sum_probs=149.9
Q ss_pred ecCCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEE
Q 001336 317 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 396 (1097)
Q Consensus 317 ~h~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 396 (1097)
.....+.+|.|.+++. ++++| ..|.| +...+.|+.-..... ........+.+|.|++ +..+
T Consensus 33 ~~~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~tW~~~~~---------------~~~~~~~~~~~i~~~~-~~~~ 93 (327)
T 2xbg_A 33 PTTATILDMSFIDRHH-GWLVG-VNATL-METRDGGQTWEPRTL---------------VLDHSDYRFNSVSFQG-NEGW 93 (327)
T ss_dssp SCSSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSSCEECCC---------------CCSCCCCEEEEEEEET-TEEE
T ss_pred CCCCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCCCeECCC---------------CCCCCCccEEEEEecC-CeEE
Confidence 3456799999988777 44554 45654 333444432111000 0112345788999986 4444
Q ss_pred EEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCce-eEEeecCCcCeEE
Q 001336 397 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QYIFEGHESPVYS 475 (1097)
Q Consensus 397 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~ 475 (1097)
+ ++.++.|.. ..+.|+.-........+.+.+..+.+.+++. +++.+ .++.|..- ...|+. .....++...+..
T Consensus 94 ~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~ 167 (327)
T 2xbg_A 94 I-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRN 167 (327)
T ss_dssp E-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEE
T ss_pred E-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEE
Confidence 4 456674433 3333443332211112345678888877766 45544 45554322 123432 2233445567888
Q ss_pred EeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEE
Q 001336 476 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 555 (1097)
Q Consensus 476 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 555 (1097)
+++. +++.+++.+...+..+-+|-....-..........+..+.+.++++.++.+. .+.+.+.+...++.-..
T Consensus 168 ~~~~--~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~ 240 (327)
T 2xbg_A 168 LNRS--PSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGE 240 (327)
T ss_dssp EEEC--TTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECC
T ss_pred EEEc--CCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEe
Confidence 8874 4556776665444444343211111111122344788899999988766542 22455553222333222
Q ss_pred ecCC---CCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-CCCCCcceEEEcCCCCEEEEEECCCcEEE
Q 001336 556 YHGL---GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-GGLQASPCIRFNKEGILLAVSTNDNGIKI 631 (1097)
Q Consensus 556 ~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~s~~~dg~i~i 631 (1097)
+... ....+..+.+.+++..++++ .+|.| ++..+.|+....+... .....+.++.|.+++ .+++++.+|.|.-
T Consensus 241 ~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~ 317 (327)
T 2xbg_A 241 LLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLR 317 (327)
T ss_dssp CBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEE
T ss_pred ccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEE
Confidence 2211 11257888898877665554 46766 4566777766665422 113457889887554 4666778887765
Q ss_pred EE
Q 001336 632 LA 633 (1097)
Q Consensus 632 w~ 633 (1097)
++
T Consensus 318 ~~ 319 (327)
T 2xbg_A 318 YV 319 (327)
T ss_dssp EC
T ss_pred Ec
Confidence 54
No 280
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.25 E-value=0.0022 Score=69.05 Aligned_cols=232 Identities=7% Similarity=-0.014 Sum_probs=140.8
Q ss_pred EEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCC---CceeE-EeecCC
Q 001336 395 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT---GTKQY-IFEGHE 470 (1097)
Q Consensus 395 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~---~~~~~-~~~~h~ 470 (1097)
+|+.+..+ .|+..|+.+.+... +......+..++|.+++.. ++++-...+.|..+++.. +.... .+...-
T Consensus 3 ~ll~~~~~-~I~~i~~~~~~~~~----~~~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNRH-EVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEECBS-SEEEEETTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECCC-eEEEEECCCcceEe----hhcCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 34444433 48888888765332 2223456789999987764 555666678999999876 12222 232222
Q ss_pred cCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC
Q 001336 471 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 550 (1097)
Q Consensus 471 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 550 (1097)
.....+++.+. ++.+.++-...+.|.+.+++.................++++|.+..|+.+... ....|...++..
T Consensus 77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG- 152 (316)
T 1ijq_A 77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNG- 152 (316)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTS-
T ss_pred CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCC-
Confidence 34567777432 33555666778999999987544444443344567899999977766665432 125788888753
Q ss_pred eeeEEecCCCCcceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcE
Q 001336 551 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI 629 (1097)
Q Consensus 551 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i 629 (1097)
.....+....-.....+++++++..|+.+. ..+.|..+|++...................+++. .+.++++-...+.|
T Consensus 153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V 231 (316)
T 1ijq_A 153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 231 (316)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeE
Confidence 333333222223577899999887777766 6679999999754433333322222334577775 35555555567788
Q ss_pred EEEEcCCC
Q 001336 630 KILANADG 637 (1097)
Q Consensus 630 ~iw~~~~~ 637 (1097)
..++..++
T Consensus 232 ~~~~~~~g 239 (316)
T 1ijq_A 232 FSANRLTG 239 (316)
T ss_dssp EEEETTTC
T ss_pred EEEeCCCC
Confidence 88887666
No 281
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.24 E-value=0.0007 Score=75.37 Aligned_cols=205 Identities=10% Similarity=0.025 Sum_probs=132.8
Q ss_pred CCeeEEEEccCCCEEEEEe--CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEE
Q 001336 807 DAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKT 884 (1097)
Q Consensus 807 ~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~ 884 (1097)
..+..++|++.+..|.... .+.|..+++........+.........+++.+.++.++++-...+.|.+.++.......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 4578999998777777665 68899999977654444443334567789987455555555567789888877543333
Q ss_pred EecccccCeEEEEEecCCCEEEEEeC-C-CcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE--eC
Q 001336 885 KLKGHQKRITGLAFSNTLNVLVSSGA-D-SQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HE 960 (1097)
Q Consensus 885 ~l~~h~~~V~~l~~s~dg~~l~s~~~-D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~--~d 960 (1097)
.+.........+++.|.+..|+.+.. + +.|...+++.... ..+ ...+. .....++|++++..|..+ ..
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~~-~~~~~----~~PnGlavd~~~~~lY~aD~~~ 267 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR---RII-ADTHL----FWPNGLTIDYAGRRMYWVDAKH 267 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EEE-ECSSC----SCEEEEEEEGGGTEEEEEETTT
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc---EEE-EECCC----CCeeeEEEeCCCCEEEEEECCC
Confidence 33334456789999987766665543 3 5788888765321 111 11111 235789999888877775 45
Q ss_pred CeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeC
Q 001336 961 TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRIN 1022 (1097)
Q Consensus 961 ~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~ 1022 (1097)
+.|..++++.... ..+.. ........+++ ..+.++++-...+.|..++..+|+....+.
T Consensus 268 ~~I~~~d~dG~~~-~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 268 HVIERANLDGSHR-KAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TEEEEECTTSCSC-EEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEeCCCCee-EEEEE-CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 7899999875433 22221 22446678888 445566666667889999877777665554
No 282
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.20 E-value=0.0018 Score=71.91 Aligned_cols=246 Identities=11% Similarity=-0.004 Sum_probs=148.7
Q ss_pred eeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEE-E
Q 001336 322 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA-Y 400 (1097)
Q Consensus 322 V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~-~ 400 (1097)
-+|.+..+. .+|+++ ....|+..++..+.... +......+..++|++.+..|... .
T Consensus 79 ~~C~~~~~~-~~l~~~--~~~~I~~i~~~~~~~~~--------------------~~~~~~~~~gl~~d~~~~~ly~~D~ 135 (386)
T 3v65_B 79 RSCKALGPE-PVLLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWSDV 135 (386)
T ss_dssp SCEEECSSC-CEEEEE--CBSCEEEECTTSCCCEE--------------------EECSCSCEEEEEEETTTTEEEEEET
T ss_pred CeECCcccc-ceeEee--cCccceeeccCCCcEEE--------------------EecCCCccEEEEEecCCCeEEEEeC
Confidence 345555553 334333 34568888887654322 11223468899999866666555 4
Q ss_pred CCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeecc
Q 001336 401 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH 480 (1097)
Q Consensus 401 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 480 (1097)
..+.|..++..++.... . +.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++.+
T Consensus 136 ~~~~I~r~~~~g~~~~~-~--~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp 211 (386)
T 3v65_B 136 TLDRILRANLNGSNVEE-V--VSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHP 211 (386)
T ss_dssp TTTEEEEEETTSCCEEE-E--ECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEET
T ss_pred CCCcEEEEecCCCCcEE-E--EeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEc
Confidence 56789999988764222 1 2222234567888876664 456666677899988765443333333345678888854
Q ss_pred cCCccEEEEEcCC-CeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCC
Q 001336 481 KENIQFIFSTATD-GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 559 (1097)
Q Consensus 481 ~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 559 (1097)
. ++.+.++-... +.|..++++.................++++|++..|..+-. ....|..+|+........+...
T Consensus 212 ~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~ 287 (386)
T 3v65_B 212 M-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQG 287 (386)
T ss_dssp T-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECSS
T ss_pred C-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEECC
Confidence 3 23444444444 78888888755444444333446789999988887777642 3457999998654333333322
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001336 560 GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID 600 (1097)
Q Consensus 560 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 600 (1097)
. .....+++ ..+..+++-...+.|..++..+|+.+..+.
T Consensus 288 ~-~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 288 L-PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp C-SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred C-CCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 2 24566777 334444555577888888877777766665
No 283
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=0.00039 Score=78.55 Aligned_cols=246 Identities=11% Similarity=0.026 Sum_probs=144.0
Q ss_pred CeeEEEEcc-CCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEEC-CC----cEEEEEcccc
Q 001336 808 AVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME-DS----SIQIYNVRVD 880 (1097)
Q Consensus 808 ~v~~l~~s~-dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~-dg----~v~vwd~~~~ 880 (1097)
....++++| ++..|.++. .+.|+.+|+.++...... ........++|++ ++++|+++.. ++ .+.+++.. +
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeCC-C
Confidence 457899998 466666666 578999999776544433 3556689999999 7885655554 22 34444433 3
Q ss_pred eEE--EEecccccCeEEEEEec-CCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE
Q 001336 881 EVK--TKLKGHQKRITGLAFSN-TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA 957 (1097)
Q Consensus 881 ~~~--~~l~~h~~~V~~l~~s~-dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~ 957 (1097)
... ..+.. ......++++| +|.++++-..++.|..++..++... ........ .....++|+|+|++|.+
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~--~~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT--PLFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE--EEEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE--EEEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 211 22221 23356788999 7777777667788999998865421 11222111 23678999999997766
Q ss_pred E--eCCeEEEEeCCC--cce--eeeeecc----CC---------CCCEE-EEEEe--------cCCCEEEEEecCCeEEE
Q 001336 958 V--HETQIAIYEAPK--LEC--LKQFVPR----EA---------SGPIT-HATYS--------CDSQSIYVAFEEGSVGV 1009 (1097)
Q Consensus 958 ~--~d~~v~vwd~~~--~~~--~~~~~~~----~h---------~~~v~-~v~~s--------~dg~~l~s~s~Dg~v~v 1009 (1097)
+ ..+.|..++.+. ++. +..+... +. -.... .++.. ++|.+.++=...+.|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 4 567899987653 221 1111100 00 11233 45553 34666666566788999
Q ss_pred EeCCCCceeeeeCCCCcCCCCC-------CC-ceeeEEEEEcCCCCCEEEEEecCCcEEEEecC
Q 001336 1010 LTASTLRLRCRINPTAYLPTNP-------SL-RVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1065 (1097)
Q Consensus 1010 wd~~~~~~~~~~~~~~~~~~~h-------~~-~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~ 1065 (1097)
++ .+|...........-..|. .. --.+..+++.|+++.++++-...+.|+..+++
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 98 5565443332210000010 00 11355678888556777776667788888765
No 284
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.19 E-value=0.001 Score=68.12 Aligned_cols=191 Identities=9% Similarity=0.069 Sum_probs=126.5
Q ss_pred CCCeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEE
Q 001336 319 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 398 (1097)
Q Consensus 319 ~~~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 398 (1097)
...+..++|+|++..|+++...++.|...|.. ++.+.... +.+ ....-.|++.+++.++++
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~vs 86 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVIS 86 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEEE
Confidence 45799999999988888888899999999998 66554321 222 256778899999988777
Q ss_pred EECCCEEEEEEccCCeeee--eeeeee----cccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECC---CCceeEEee--
Q 001336 399 AYSKHIVHLYTYHGGDELR--NHLEIE----AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV---TGTKQYIFE-- 467 (1097)
Q Consensus 399 ~~~dg~i~iwd~~~~~~~~--~~~~l~----~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~---~~~~~~~~~-- 467 (1097)
.-.++.+.++++.....+. ....+. ........++|+|+++. |.++.......+|.+. .+..+..+.
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l~i~~~~ 164 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNELHISKDK 164 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCceeeecch
Confidence 6677889999887654322 111111 23456799999999984 4444444344444432 112222221
Q ss_pred -----cCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCC---------CceEEEEEccCCCEEEEe
Q 001336 468 -----GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG---------HSSTMMAYSADGARLFSC 532 (1097)
Q Consensus 468 -----~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~ 532 (1097)
.+...+.++++++.. +.+++.....+.+.++|.+. +....+.... ..-..++|.++|+..+++
T Consensus 165 ~~~~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs 241 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS 241 (255)
T ss_dssp HHHHTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred hhccccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence 123456788887754 57888888889999998764 3444333332 256899999999866653
No 285
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.18 E-value=0.00032 Score=79.26 Aligned_cols=248 Identities=7% Similarity=-0.017 Sum_probs=144.9
Q ss_pred CeeEEEEccC--CCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECC---C-cEEEEEcccc
Q 001336 808 AVPCFALSKN--DSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED---S-SIQIYNVRVD 880 (1097)
Q Consensus 808 ~v~~l~~s~d--g~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~d---g-~v~vwd~~~~ 880 (1097)
....++++|+ +..|..+. .+.|+.+|..+++... +.........+++++ +++++++.... . .+..++...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4568999984 44555555 5889999998776554 444556689999999 77744443311 1 2333333222
Q ss_pred eE-EEEecccccCeEEEEEec-CCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE
Q 001336 881 EV-KTKLKGHQKRITGLAFSN-TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV 958 (1097)
Q Consensus 881 ~~-~~~l~~h~~~V~~l~~s~-dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~ 958 (1097)
.. ...+. .-.....+++.| +|.++++-..++.|+.++..+++... ....... . .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~~--~---~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMDT--K---GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECSC--C---SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccCC--C---CCcccEEEeCCCCEEEEE
Confidence 11 01111 223346688999 67766666677889999987655311 1111111 1 123469999999977665
Q ss_pred --eCCeEEEEeCC--Cccee--eeeecc----C---------CCCCEEEEEE---------ecCCCEEEEEecCCeEEEE
Q 001336 959 --HETQIAIYEAP--KLECL--KQFVPR----E---------ASGPITHATY---------SCDSQSIYVAFEEGSVGVL 1010 (1097)
Q Consensus 959 --~d~~v~vwd~~--~~~~~--~~~~~~----~---------h~~~v~~v~~---------s~dg~~l~s~s~Dg~v~vw 1010 (1097)
..+.|+.++.+ ++... ..+... + .-.....+++ .++|.++++-...+.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 45789998765 23221 111100 1 1124677999 7777777776677899999
Q ss_pred eCCCCceeeeeCCCCcCCCCCC-------Cc-eeeEEEEEcCCCCCEEEEEecCCcEEEEecC
Q 001336 1011 TASTLRLRCRINPTAYLPTNPS-------LR-VYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1065 (1097)
Q Consensus 1011 d~~~~~~~~~~~~~~~~~~~h~-------~~-v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~ 1065 (1097)
+. +|..............|.. .. -.+..+++.|.++.++++=...+.|+..+++
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 84 5654433322110000100 11 1355678886567777777777888888775
No 286
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.17 E-value=0.0001 Score=88.99 Aligned_cols=235 Identities=8% Similarity=-0.046 Sum_probs=130.5
Q ss_pred EEEEcc-CCCEEEEEECCC-----------EEEEEEccCCeeeeeeeeee-cccCcEEEEEEecCCCcEEEEEEe-CCCc
Q 001336 386 RVMWSP-DGTLFGVAYSKH-----------IVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCG-EDRV 451 (1097)
Q Consensus 386 ~v~~sp-d~~~las~~~dg-----------~i~iwd~~~~~~~~~~~~l~-~h~~~V~~l~~s~d~~~~~l~s~s-~d~~ 451 (1097)
++++.+ +++.++.|+.+. .+.+||..+++-. ....+. .+.....++++..+++ +++.|+ .+..
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~-~~~~~~~~~~~~~~~~~~~~~g~--lyv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS-DRTVTVTKHDMFCPGISMDGNGQ--IVVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC-CCEEEECSCCCSSCEEEECTTSC--EEEECSSSTTC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEE-eCcccCCCCCCccccccCCCCCC--EEEeCCCCCCc
Confidence 566777 899999987643 6889999887632 222222 2333344577888898 788887 4568
Q ss_pred EEEEECCCCceeEEeecCCcCe-EEEeecccCCccEEEEEc-CC-----CeEEEEEcCCCCceeee-----cCCCCceEE
Q 001336 452 IKVWDAVTGTKQYIFEGHESPV-YSICPHHKENIQFIFSTA-TD-----GKIKAWLYDNLGSRVDY-----DAPGHSSTM 519 (1097)
Q Consensus 452 i~iwd~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~~-~d-----g~i~iwd~~~~~~~~~~-----~~~~~~v~~ 519 (1097)
+.+||..+++....-..+..+. .++++ .+++++++.|+ .+ ..+.+||..+..-...- ...... ..
T Consensus 267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~--~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~~ 343 (656)
T 1k3i_A 267 TSLYDSSSDSWIPGPDMQVARGYQSSAT--MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-KQ 343 (656)
T ss_dssp EEEEEGGGTEEEECCCCSSCCSSCEEEE--CTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-TT
T ss_pred eEEecCcCCceeECCCCCccccccceEE--ecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-cc
Confidence 9999998876544222222221 22333 34567888888 34 56889998764422210 000000 00
Q ss_pred EEEccCCCEEEEeeeCCC-----CCceEEEEeCCCCeeeEEecCCCC--------cceEEEEEcC-CCCEEEEEeCCC--
Q 001336 520 MAYSADGARLFSCGTNKE-----GESYLVEWNESEGAVKRTYHGLGK--------RSVGVVQFDT-TKNRFLAAGDEF-- 583 (1097)
Q Consensus 520 ~~~s~~~~~l~~~~~~~~-----~~~~i~~wd~~~~~~~~~~~~~~~--------~~v~~~~~~~-~~~~l~~~~~dg-- 583 (1097)
..+..++..++.++.++. ....+..||..+............ ..-.++.+.. +++.++.|+.++
T Consensus 344 ~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~ 423 (656)
T 1k3i_A 344 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ 423 (656)
T ss_dssp GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence 122345555555544321 134578899887654332221110 0123444433 667777777432
Q ss_pred ---------cEEEEECCCCceEEEEecCCCCCCc-ceEEEcCCCCEEEEEECC
Q 001336 584 ---------MIKFWDMDNVNLLASIDADGGLQAS-PCIRFNKEGILLAVSTND 626 (1097)
Q Consensus 584 ---------~i~iwd~~~~~~~~~~~~~~~~~~v-~~v~~s~~~~~l~s~~~d 626 (1097)
.|.+||..+.+-............. .+++..|++++++.|+.+
T Consensus 424 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 424 DSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp SSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 6788888776654433011112222 345667788888888754
No 287
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.16 E-value=0.0023 Score=71.40 Aligned_cols=208 Identities=8% Similarity=-0.049 Sum_probs=133.8
Q ss_pred CCCeeEEEEccCCCEEEEEe--CCeEEEEEcCCC----ceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEccc
Q 001336 806 EDAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV 879 (1097)
Q Consensus 806 ~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~----~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~ 879 (1097)
...+.+++|++.+..|..+. .+.|+.+++... .....+.........+++.+.+++++++-...+.|.+.+++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 45678999999877777776 678999988652 233333334456788999874455555555678999999876
Q ss_pred ceEEEEecccccCeEEEEEecCCCEEEEEeC--CCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE
Q 001336 880 DEVKTKLKGHQKRITGLAFSNTLNVLVSSGA--DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA 957 (1097)
Q Consensus 880 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~ 957 (1097)
......+.........|++.|.+..|+.+.. .+.|...+++..... .+ +..+. .....+++++++..|..
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~---~~-~~~~l----~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---SL-VTENI----QWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE---EE-ECSSC----SCEEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE---EE-EECCC----CceEEEEEEeCCCEEEE
Confidence 5444444434455789999997666665543 367888888763311 11 11111 34688999998888877
Q ss_pred E--eCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeC
Q 001336 958 V--HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRIN 1022 (1097)
Q Consensus 958 ~--~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~ 1022 (1097)
+ ..+.|..+|++...........+.-....++++. .+.++++-...+.|..++..+|+.+..+.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 5 4578999998754433222221223456677773 34455566667889999977777665554
No 288
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.14 E-value=0.00033 Score=85.70 Aligned_cols=245 Identities=6% Similarity=-0.040 Sum_probs=133.9
Q ss_pred CCCCC-CeEEEEEc-cCCCEEEEEEC-C----CEEEEEEccCC-eeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCC
Q 001336 378 SDYTA-SVNRVMWS-PDGTLFGVAYS-K----HIVHLYTYHGG-DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED 449 (1097)
Q Consensus 378 ~~h~~-~V~~v~~s-pd~~~las~~~-d----g~i~iwd~~~~-~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d 449 (1097)
.+|.. .+...+|| |||++||.+.. + .+|+++|+.++ +.+.. .+.. ....++|+|||+. |+....|
T Consensus 169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~---~~~~~~WspDg~~--l~y~~~d 241 (751)
T 2xe4_A 169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSG---TNGEIVWGPDHTS--LFYVTKD 241 (751)
T ss_dssp TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEE---ECSCCEECSSTTE--EEEEEEC
T ss_pred cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccC---ceeeEEEecCCCE--EEEEEEC
Confidence 34554 78899999 99999987643 2 26999999998 63221 1221 1346899999984 4444443
Q ss_pred -----CcEEEEECCCCce--eEEeec-CCcCeEEEeecccCCccEEEEEc---CCCeEEEEEcCCCCc-e--eee-cCCC
Q 001336 450 -----RVIKVWDAVTGTK--QYIFEG-HESPVYSICPHHKENIQFIFSTA---TDGKIKAWLYDNLGS-R--VDY-DAPG 514 (1097)
Q Consensus 450 -----~~i~iwd~~~~~~--~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~-~--~~~-~~~~ 514 (1097)
..|+++++.++.. ...+.. .......+.| ++||++|+..+ ....|.++|+++... . ..+ ....
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~ 319 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK--AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK 319 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE--CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE--CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence 3688899887642 233332 2234455666 56677776554 234678888876532 2 222 2223
Q ss_pred CceEEEEEccCCCEEEEeeeCC-CCCceEEEEeCCCC-eeeE-EecCCCCcceEEEEEcCCCCEE-EEEeCCCc--EEEE
Q 001336 515 HSSTMMAYSADGARLFSCGTNK-EGESYLVEWNESEG-AVKR-TYHGLGKRSVGVVQFDTTKNRF-LAAGDEFM--IKFW 588 (1097)
Q Consensus 515 ~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~--i~iw 588 (1097)
....++.|+ +|+.|+..+... .+...|..+|+.++ .... .+.......+..+.+. ++.| ++...++. |+++
T Consensus 320 ~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 320 GVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp TCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEE
T ss_pred CceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence 344444443 366666655432 34667888898753 3222 2332222234444544 4454 44556675 5556
Q ss_pred EC-------CCCceEEEEecCCCCCCcceEEE------cCCCC-EEEEEECC---CcEEEEEcCCC
Q 001336 589 DM-------DNVNLLASIDADGGLQASPCIRF------NKEGI-LLAVSTND---NGIKILANADG 637 (1097)
Q Consensus 589 d~-------~~~~~~~~~~~~~~~~~v~~v~~------s~~~~-~l~s~~~d---g~i~iw~~~~~ 637 (1097)
++ .+++....+.... ....+.+ ++++. ++++.+.. ..+..+++.++
T Consensus 397 dl~~~~~~~~~g~~~~~l~l~~---~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~ 459 (751)
T 2xe4_A 397 MADSQDGVFKAGTGLREVVMEE---PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDH 459 (751)
T ss_dssp ECCTTTSCCCTTTCCEECCCCC---SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTC
T ss_pred ecccccccccCCccceEECCCC---ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 65 3444134443221 1223334 34554 44444332 35666777665
No 289
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.11 E-value=0.0058 Score=68.16 Aligned_cols=232 Identities=8% Similarity=0.004 Sum_probs=145.8
Q ss_pred EEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC----ceeEEeecCC
Q 001336 395 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG----TKQYIFEGHE 470 (1097)
Q Consensus 395 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~h~ 470 (1097)
+|+.+. ...|+..++....... +......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEec-cceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 444443 4678888887654322 2334566889999987664 4555556788999998652 2233333344
Q ss_pred cCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC
Q 001336 471 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 550 (1097)
Q Consensus 471 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 550 (1097)
.....+++.+. .+.+.++-...+.|.+.+++.................+++.|.+.+|+..-.. ....|...++...
T Consensus 159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~--~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS--SSCCEEEEETTSC
T ss_pred CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC--CCCEEEEEeCCCC
Confidence 55677887542 33566666778899999988655555554444567899999977776665321 1346888887654
Q ss_pred eeeEEecCCCCcceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcE
Q 001336 551 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI 629 (1097)
Q Consensus 551 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i 629 (1097)
.........- .....+++++++..|+.+. ..+.|..+|++.......+...........+++. .+.++.+-...+.|
T Consensus 236 ~~~~~~~~~l-~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 236 DIYSLVTENI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp SCEEEECSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred ccEEEEECCC-CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 3333333222 2678899998888877776 6788999999765554444432223334566663 34455555667788
Q ss_pred EEEEcCCC
Q 001336 630 KILANADG 637 (1097)
Q Consensus 630 ~iw~~~~~ 637 (1097)
..++..++
T Consensus 314 ~~~~~~~G 321 (400)
T 3p5b_L 314 FSANRLTG 321 (400)
T ss_dssp EEEESSSC
T ss_pred EEEEcCCC
Confidence 88887666
No 290
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.10 E-value=0.0011 Score=67.91 Aligned_cols=203 Identities=11% Similarity=0.080 Sum_probs=131.7
Q ss_pred CCCCeeEEEEccCCCEEEEEe--CCeEEEEEcCCCceeEEeCC-CCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccce
Q 001336 805 PEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMP-PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE 881 (1097)
Q Consensus 805 h~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~ 881 (1097)
-...+..++++|++..|.+.. ++.|...|.. ++.++.+.- -....-.+++.+ ++.++++.-.++.+.++++....
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTC
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCC
Confidence 456799999999877666544 6788889987 888777642 235688889988 77776666577889999886543
Q ss_pred ---EEEEec------ccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccc--ceeeEeecC-CCCCCccCCeEEEEc
Q 001336 882 ---VKTKLK------GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQ--ASKFLTIPN-GRTASALADTRVQFH 949 (1097)
Q Consensus 882 ---~~~~l~------~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~--~~~~~~~~~-~~~~~~~~v~~l~~s 949 (1097)
.+.... ......-.|+|+|+++.|+++.+.....+|.++. ... ......... ........+..++++
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g-~~~~~~l~i~~~~~~~~~~~~~d~S~l~~d 181 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG-LLSSNELHISKDKALQRQFTLDDVSGAEFN 181 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES-TTCSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc-cccCCceeeecchhhccccccCCceeEEEc
Confidence 222221 1334568999999998888877766666666652 100 011111100 000011347889999
Q ss_pred CCCcEEEE-E-eCCeEEEEeCCCcceeeeeeccC-C------CCCEEEEEEecCCCEEEEEecCCeEEEEeC
Q 001336 950 LDQTHLLA-V-HETQIAIYEAPKLECLKQFVPRE-A------SGPITHATYSCDSQSIYVAFEEGSVGVLTA 1012 (1097)
Q Consensus 950 ~dg~~l~~-~-~d~~v~vwd~~~~~~~~~~~~~~-h------~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~ 1012 (1097)
|....|.+ + ..+.+.++|.. ++.+..+.... . -..--.|+|.++|++.+ +++-+.+++|.-
T Consensus 182 p~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~~y~f~~ 251 (255)
T 3qqz_A 182 QQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEPNRFYRFTP 251 (255)
T ss_dssp TTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETTTEEEEEEC
T ss_pred CCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcCCceEEEEEe
Confidence 97665555 5 55789999977 55665555432 1 13678999999998555 577777777653
No 291
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.00 E-value=0.0014 Score=69.49 Aligned_cols=197 Identities=10% Similarity=0.142 Sum_probs=125.4
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCC---CCC---EEEEEEC---CCcEEEEEcc--cceEEE
Q 001336 817 NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ---DNN---IIAIGME---DSSIQIYNVR--VDEVKT 884 (1097)
Q Consensus 817 dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~---~~~---~la~g~~---dg~v~vwd~~--~~~~~~ 884 (1097)
...+++... .+.+.+||+ +|+.+..+.. +.++.+..-|. +++ ++++... +++|.+|++. +++ +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 444555444 788999999 8898888853 66777776661 111 3333333 5789999773 443 44
Q ss_pred Eecc------cc-cCeEEEEE--ecC-CC-EEEEEeCCCcEEEEEcCC---CcccceeeEeecCCCCCCccCCeEEEEcC
Q 001336 885 KLKG------HQ-KRITGLAF--SNT-LN-VLVSSGADSQLCVWSTDG---WEKQASKFLTIPNGRTASALADTRVQFHL 950 (1097)
Q Consensus 885 ~l~~------h~-~~V~~l~~--s~d-g~-~l~s~~~Dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 950 (1097)
.+.. .. ..+..+++ +|. +. +++....+|.+..|++.. +.........+.-+ ..+..+...+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-----sq~EgcvvDd 189 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-----SQTEGMAADD 189 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-----SCEEEEEEET
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-----CCcceEEEcC
Confidence 4421 11 45667777 664 43 688888999999999843 32222222222222 3478899999
Q ss_pred CCcEEEEE-eCCeEEEEeCC-----CcceeeeeeccCCCCCEEEEEE--ecCCC-EEEEEe-cCCeEEEEeCC-CCceee
Q 001336 951 DQTHLLAV-HETQIAIYEAP-----KLECLKQFVPREASGPITHATY--SCDSQ-SIYVAF-EEGSVGVLTAS-TLRLRC 1019 (1097)
Q Consensus 951 dg~~l~~~-~d~~v~vwd~~-----~~~~~~~~~~~~h~~~v~~v~~--s~dg~-~l~s~s-~Dg~v~vwd~~-~~~~~~ 1019 (1097)
....|+++ .+..|..|+.+ +++.+..+....-...+..+++ .++|+ ||++++ .++++.|||.. +.+.+.
T Consensus 190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence 88888887 44557777755 3444544422222357888888 56666 777677 46799999996 677776
Q ss_pred eeC
Q 001336 1020 RIN 1022 (1097)
Q Consensus 1020 ~~~ 1022 (1097)
.+.
T Consensus 270 ~f~ 272 (355)
T 3amr_A 270 DFR 272 (355)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 292
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.99 E-value=0.0014 Score=74.01 Aligned_cols=241 Identities=7% Similarity=0.104 Sum_probs=137.1
Q ss_pred CCeEEEEEcc-CCCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeC-CC----cEEEE
Q 001336 382 ASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DR----VIKVW 455 (1097)
Q Consensus 382 ~~V~~v~~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~-d~----~i~iw 455 (1097)
.....|+++| ++..|.++...+.|+.+|..++.. .. +.........++|+++++. |+.+.. ++ .+.+.
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v-~~---~~~~~~~P~~ia~d~~G~~--lyvad~~~~~~~~~v~~~ 210 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV-ST---VYSGLSKVRTICWTHEADS--MIITNDQNNNDRPNNYIL 210 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE-EE---EECCCSCEEEEEECTTSSE--EEEEECCSCTTSEEEEEE
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE-EE---EecCCCCcceEEEeCCCCE--EEEEeCCCCcccceEEEE
Confidence 3567899998 466677776668899999987653 22 3234456889999999984 444443 22 23334
Q ss_pred ECCCCcee--EEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecC-CCCceEEEEEccCCCEEEEe
Q 001336 456 DAVTGTKQ--YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-PGHSSTMMAYSADGARLFSC 532 (1097)
Q Consensus 456 d~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~ 532 (1097)
+ ..+... ..+.. ......+++++. +|.++++-..++.|..++.+.......... .......++|+|+|++|+.+
T Consensus 211 ~-~~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~ 287 (430)
T 3tc9_A 211 T-RESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIV 287 (430)
T ss_dssp E-GGGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred e-CCCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEE
Confidence 4 344322 22321 222445666432 556777777788999999876543222222 22356789999999976665
Q ss_pred eeCCCCCceEEEEeCCC--Cee--eEEecCC------CC--------cceE-EEEEc--------CCCCEEEEEeCCCcE
Q 001336 533 GTNKEGESYLVEWNESE--GAV--KRTYHGL------GK--------RSVG-VVQFD--------TTKNRFLAAGDEFMI 585 (1097)
Q Consensus 533 ~~~~~~~~~i~~wd~~~--~~~--~~~~~~~------~~--------~~v~-~~~~~--------~~~~~l~~~~~dg~i 585 (1097)
.. ....|..++... +.. +..+.+. .. .... .++.. +++..+++-...+.|
T Consensus 288 d~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I 364 (430)
T 3tc9_A 288 VV---NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCI 364 (430)
T ss_dssp ET---TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEE
T ss_pred EC---CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEE
Confidence 43 244688876542 222 2222221 00 0122 45553 335555554567888
Q ss_pred EEEECCCCceEEEEec---------CC------CCCCcceEEEcCC-CCEEEEEECCCcEEEEEcC
Q 001336 586 KFWDMDNVNLLASIDA---------DG------GLQASPCIRFNKE-GILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 586 ~iwd~~~~~~~~~~~~---------~~------~~~~v~~v~~s~~-~~~l~s~~~dg~i~iw~~~ 635 (1097)
+.++. +|+....... .+ ....-..++++++ +.++++-...+.|+.++.+
T Consensus 365 ~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 365 RILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 88884 4654433321 00 0113467888884 5555554556677776643
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.91 E-value=0.01 Score=71.70 Aligned_cols=207 Identities=8% Similarity=-0.045 Sum_probs=129.5
Q ss_pred CCCeeEEEEccCCCEEEEEe--CCeEEEEEcCCC----ceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEccc
Q 001336 806 EDAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV 879 (1097)
Q Consensus 806 ~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~----~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~ 879 (1097)
...+.+++|++.+..|..+. .+.|+.+++... .....+.........|++.+.+++++++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 45678999999777776665 578998988652 223334334456778999883445556666778999999886
Q ss_pred ceEEEEecccccCeEEEEEecCCCEEEEEeC--CCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEE
Q 001336 880 DEVKTKLKGHQKRITGLAFSNTLNVLVSSGA--DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA 957 (1097)
Q Consensus 880 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~ 957 (1097)
......+.........|++.|.+..|+.+.. .+.|.+.+++.... ...+..+ . .....|++++.+..|+.
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~----~~lv~~~-l---~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----YSLVTEN-I---QWPNGITLDLLSGRLYW 574 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE----EEEECSS-C---SCEEEEEEETTTTEEEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce----EEEEeCC-C---CCceEEEEecCCCeEEE
Confidence 5443333334456789999998666666553 26788888876331 1111111 1 34688999988877777
Q ss_pred E--eCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeee
Q 001336 958 V--HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRI 1021 (1097)
Q Consensus 958 ~--~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~ 1021 (1097)
+ ..+.|..++++...........+.-....+|++..+ +++++-...+.|...+..+|+.+..+
T Consensus 575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcceEEe
Confidence 5 457899999875544333332122334567777433 44444445688888887777554444
No 294
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.90 E-value=0.0036 Score=70.53 Aligned_cols=240 Identities=10% Similarity=0.138 Sum_probs=136.1
Q ss_pred CCeEEEEEccC--CCEEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCC---Cc-EEEE
Q 001336 382 ASVNRVMWSPD--GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED---RV-IKVW 455 (1097)
Q Consensus 382 ~~V~~v~~spd--~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d---~~-i~iw 455 (1097)
.....++|+|+ +..|..+...+.|+.+|..++.... +.........++|+++|+ ++++.... .. +...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~----~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI----KTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE----ECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE----eecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEE
Confidence 35678999995 4556555544889999998776432 333445689999999999 55555422 12 3333
Q ss_pred ECCCCcee-EEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCc-eeeecC-CCCceEEEEEccCCCEEEEe
Q 001336 456 DAVTGTKQ-YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVDYDA-PGHSSTMMAYSADGARLFSC 532 (1097)
Q Consensus 456 d~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~ 532 (1097)
+...+... ..+. .......+++.+. +|.+.++-..++.|+.++..++.. ...... .......++|+|++++|+.+
T Consensus 213 ~~~~~~~~~~~~~-~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 213 TRASGFTERLSLC-NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CGGGTTCCEEEEE-ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred ECCCCeecccccc-ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 32222110 1111 1222344566331 556666666778899998875554 122211 22234579999999976665
Q ss_pred eeCCCCCceEEEEeCC--CCee--eEEecCC--------------CCcceEEEEE---------cCCCCEEEEEeCCCcE
Q 001336 533 GTNKEGESYLVEWNES--EGAV--KRTYHGL--------------GKRSVGVVQF---------DTTKNRFLAAGDEFMI 585 (1097)
Q Consensus 533 ~~~~~~~~~i~~wd~~--~~~~--~~~~~~~--------------~~~~v~~~~~---------~~~~~~l~~~~~dg~i 585 (1097)
.. ....|..++.. ++.. ...+.+. .-.....+++ .++++++++-...+.|
T Consensus 291 d~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I 367 (433)
T 4hw6_A 291 YN---GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV 367 (433)
T ss_dssp ET---TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred eC---CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence 42 34578887754 3322 1222221 0113456888 6677666666678899
Q ss_pred EEEECCCCceEEEEecCCC----------------CCCcceEEEc-CCCCEEEEEECCCcEEEEEc
Q 001336 586 KFWDMDNVNLLASIDADGG----------------LQASPCIRFN-KEGILLAVSTNDNGIKILAN 634 (1097)
Q Consensus 586 ~iwd~~~~~~~~~~~~~~~----------------~~~v~~v~~s-~~~~~l~s~~~dg~i~iw~~ 634 (1097)
+.++. +|... ++.+.+. ...-..++++ +++.++++-...+.|+.+++
T Consensus 368 ~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 368 RVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 99985 55433 3332211 1123467888 45555555555667776664
No 295
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.87 E-value=0.0052 Score=65.97 Aligned_cols=204 Identities=9% Similarity=-0.021 Sum_probs=130.3
Q ss_pred CeeEEEEccCCCEEEEEe--CCeEEEEEcCCCcee-EEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEE
Q 001336 808 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTM-TTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKT 884 (1097)
Q Consensus 808 ~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~ 884 (1097)
.+.+++|++.+..|..+. .+.|..++....... ..+...-.....+++.+.++.++++-...+.|.+++++......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 466889998777776665 688999998765321 22222234567889987455555555567899999987543222
Q ss_pred EecccccCeEEEEEecCCCEEEEEeC--CCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE--eC
Q 001336 885 KLKGHQKRITGLAFSNTLNVLVSSGA--DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HE 960 (1097)
Q Consensus 885 ~l~~h~~~V~~l~~s~dg~~l~s~~~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~--~d 960 (1097)
.+.........+++.|.+..|+.+.. .+.|...+++.... ..+ ...+. .....+++++++..|..+ ..
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~~-~~~~l----~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR---FII-INSEI----YWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC---EEE-ECSSC----SCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe---EEE-EECCC----CCccEEEEeccCCEEEEEECCC
Confidence 23334455789999987666665553 57788888765321 111 11111 235789999988877775 46
Q ss_pred CeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeC
Q 001336 961 TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRIN 1022 (1097)
Q Consensus 961 ~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~ 1022 (1097)
+.|..+|++... ...+.. +.-.....+++.. +.++.+-...+.|..++..+|+....+.
T Consensus 188 ~~I~~~d~dG~~-~~~~~~-~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 188 NFIHKSNLDGTN-RQAVVK-GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TEEEEEETTSCS-CEEEEC-SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEcCCCCc-eEEEec-CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 789999987433 233321 2345667788853 3455565567899999998887665554
No 296
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.82 E-value=0.023 Score=60.84 Aligned_cols=208 Identities=12% Similarity=0.029 Sum_probs=127.4
Q ss_pred CeEEEEEccCCCEEEEE-ECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001336 383 SVNRVMWSPDGTLFGVA-YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 461 (1097)
Q Consensus 383 ~V~~v~~spd~~~las~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~ 461 (1097)
.+..++|.+.+..|... ...+.|..++..++..... .+...-.....+++.+.+.. ++++-...+.|.++++....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~--~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~ 112 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSL 112 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE--EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCS
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE--EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCc
Confidence 56789999865555544 4567899999877632111 12222234677899876654 55666677899999976543
Q ss_pred eeEEeecCCcCeEEEeecccCCccEEEEEc--CCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCC
Q 001336 462 KQYIFEGHESPVYSICPHHKENIQFIFSTA--TDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE 539 (1097)
Q Consensus 462 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 539 (1097)
....+.........+++.+.. ..|+.+. ..+.|...+++...........-.....+++++++..|..+-. ..
T Consensus 113 ~~~l~~~~~~~P~giavdp~~--g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~ 187 (318)
T 3sov_A 113 RKVLFWQELDQPRAIALDPSS--GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KL 187 (318)
T ss_dssp CEEEECSSCSSEEEEEEEGGG--TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TT
T ss_pred EEEEEeCCCCCccEEEEeCCC--CEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CC
Confidence 333333344556788885432 3444443 3578888887754433333333346789999998887777642 35
Q ss_pred ceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001336 540 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID 600 (1097)
Q Consensus 540 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 600 (1097)
..|..+|+..........+.. .....+++.. +..+++-...+.|..++..+|+....+.
T Consensus 188 ~~I~~~d~dG~~~~~~~~~~~-~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 188 NFIHKSNLDGTNRQAVVKGSL-PHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TEEEEEETTSCSCEEEECSCC-SCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEcCCCCceEEEecCCC-CCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 579999986433322223222 2456677643 3344444477889999988887666654
No 297
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.77 E-value=0.024 Score=68.56 Aligned_cols=232 Identities=7% Similarity=0.002 Sum_probs=141.3
Q ss_pred EEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCC----ceeEEeecCC
Q 001336 395 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG----TKQYIFEGHE 470 (1097)
Q Consensus 395 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~h~ 470 (1097)
+|+.+. ...|+..++....... +......+..|+|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~----l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred cccccc-ccceeEeeccCCccee----eecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 444443 3447777776554222 3334556789999986664 5556666788999998653 2233333234
Q ss_pred cCeEEEeecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCC
Q 001336 471 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 550 (1097)
Q Consensus 471 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 550 (1097)
.....|++.+.. +.+.++-...+.|.+.+++.......+.........|++.|.+.+|+..-.. ....|...++...
T Consensus 471 ~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceeeeeecC-CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC--CCCeEEEEecCCC
Confidence 455678775433 3566666778999999988655544444444568899999987776665321 1257888888654
Q ss_pred eeeEEecCCCCcceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcE
Q 001336 551 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI 629 (1097)
Q Consensus 551 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i 629 (1097)
.....+... -.....|++.+.+..|+.+. ..+.|...+++.......+...........|++.. +.++++-...+.|
T Consensus 548 ~~~~lv~~~-l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I 625 (791)
T 3m0c_C 548 DIYSLVTEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAI 625 (791)
T ss_dssp CEEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEE
T ss_pred ceEEEEeCC-CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEE
Confidence 443333322 23678899998877777776 66789999997665555554322223334566542 2333444455777
Q ss_pred EEEEcCCC
Q 001336 630 KILANADG 637 (1097)
Q Consensus 630 ~iw~~~~~ 637 (1097)
...+..++
T Consensus 626 ~~~dk~tG 633 (791)
T 3m0c_C 626 FSANRLTG 633 (791)
T ss_dssp EEEETTTC
T ss_pred EEEeCCCC
Confidence 77776666
No 298
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.77 E-value=0.00017 Score=86.94 Aligned_cols=208 Identities=9% Similarity=-0.047 Sum_probs=125.6
Q ss_pred CCeeEEEEccCCCEEEEEe--CCeEEEEEcCC----CceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccc
Q 001336 807 DAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD 880 (1097)
Q Consensus 807 ~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~ 880 (1097)
..+..++|++.+..|..+. .+.|+.+++.+ ......+.........|++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4466889999888777776 57899999875 22222222122345668887535566665556789999998765
Q ss_pred eEEEEecccccCeEEEEEecCCCEEEEEeC--CCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE
Q 001336 881 EVKTKLKGHQKRITGLAFSNTLNVLVSSGA--DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV 958 (1097)
Q Consensus 881 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~ 958 (1097)
.....+.........|++.|.+.+|+.+.. .+.|.+.++..... ..+ +... . .....|+|++++..|+++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~---~~l-~~~~-l---~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSL-VTEN-I---QWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC---CEE-SCSS-C---SSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe---eEE-EeCC-C---CCccEEEEeccCCEEEEE
Confidence 443333333344678899987665554443 26787777765321 111 1111 1 335789999987777664
Q ss_pred --eCCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCC
Q 001336 959 --HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINP 1023 (1097)
Q Consensus 959 --~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~ 1023 (1097)
..+.|.+++++.......+.....-.....+++..+ .++++....+.|..++..+++.+..+..
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 457899999875332222211111233445666554 4555556678999999888887766653
No 299
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.73 E-value=0.009 Score=67.29 Aligned_cols=253 Identities=7% Similarity=-0.033 Sum_probs=138.3
Q ss_pred cceEEEEEcc-CCceeeeecc-CcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEE---
Q 001336 740 MRVSRLIYTN-SGLAILALAS-NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFAL--- 814 (1097)
Q Consensus 740 ~~i~~l~~sp-dg~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~--- 814 (1097)
.....++|.| +...|+++.. .+.|++.|+. .+.+....-.+.........++|
T Consensus 139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~----------------------~~~v~~l~~~~~~~~~~p~~ia~~~~ 196 (496)
T 3kya_A 139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDLK----------------------NRMLSSPLNINTIPTNRIRSIAFNKK 196 (496)
T ss_dssp CSEEEEEEETTEEEEEEEEEETEEEEEEEETT----------------------TTEEEEEECCTTSSCSBEEEEEECCC
T ss_pred CCCCEEEEccCCCCEEEEEECCCCeEEEEECC----------------------CCEEEEEEccCccccCCCcEEEEeec
Confidence 3467889998 3444554444 4556665443 33322211111012345889999
Q ss_pred ----ccCCCEEEEEe-CC-------eEEEEEcCC-Ccee-----EEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEE
Q 001336 815 ----SKNDSYVMSAS-GG-------KISLFNMMT-FKTM-----TTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYN 876 (1097)
Q Consensus 815 ----s~dg~~la~~s-dg-------~i~iwd~~~-~~~~-----~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd 876 (1097)
+++|+.|.++. .+ .|.+++... +... ..+. .......++++|+++.++++-..++.|..+|
T Consensus 197 ~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d 275 (496)
T 3kya_A 197 IEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLD 275 (496)
T ss_dssp BTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred ccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEe
Confidence 99999777776 33 255665433 2221 1221 1123457788995566666666788899999
Q ss_pred cc-------cceE-----------EEE-ec-ccccCeEEEEEecCCCEEEE-EeCCCcEEEEEcCCC--cccceeeEeec
Q 001336 877 VR-------VDEV-----------KTK-LK-GHQKRITGLAFSNTLNVLVS-SGADSQLCVWSTDGW--EKQASKFLTIP 933 (1097)
Q Consensus 877 ~~-------~~~~-----------~~~-l~-~h~~~V~~l~~s~dg~~l~s-~~~Dg~i~iwd~~~~--~~~~~~~~~~~ 933 (1097)
+. ++.. ... +. +....-..|+|+|+|+.|+. -.....|+.++.... .......+.-.
T Consensus 276 ~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~ 355 (496)
T 3kya_A 276 LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGG 355 (496)
T ss_dssp HHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEB
T ss_pred cccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCC
Confidence 98 5543 111 11 12234578999999996444 445677888665432 11000111111
Q ss_pred CCCCC---------CccCCe-EEEEc-------CCCcEEEE-EeCCeEEEEeCCCcceeeeeecc------------C--
Q 001336 934 NGRTA---------SALADT-RVQFH-------LDQTHLLA-VHETQIAIYEAPKLECLKQFVPR------------E-- 981 (1097)
Q Consensus 934 ~~~~~---------~~~~v~-~l~~s-------~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~------------~-- 981 (1097)
.+... ...... .++.. ++|.+.++ .....|+.++. +|. +..+... +
T Consensus 356 ~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~ 433 (496)
T 3kya_A 356 YKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTD 433 (496)
T ss_dssp TTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCC
T ss_pred CCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccC
Confidence 01100 001223 44554 45665555 46788999984 453 3333211 1
Q ss_pred --------CCCCEEEEEEecC-CCEEEEEecCCeEEEEeCCCCce
Q 001336 982 --------ASGPITHATYSCD-SQSIYVAFEEGSVGVLTASTLRL 1017 (1097)
Q Consensus 982 --------h~~~v~~v~~s~d-g~~l~s~s~Dg~v~vwd~~~~~~ 1017 (1097)
.-.....|+++++ |.++++=.....|+.++++....
T Consensus 434 dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 1134678999997 66666555678899988876543
No 300
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.69 E-value=0.024 Score=63.82 Aligned_cols=245 Identities=10% Similarity=0.125 Sum_probs=138.2
Q ss_pred CeEEEEEcc-CCCEEEEEEC-CCEEEEEEccCCeeeeeeeeee-cccCcEEEEEE-------ecCCCcEEEEEEeCCC--
Q 001336 383 SVNRVMWSP-DGTLFGVAYS-KHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAF-------SYPNKQLSVVTCGEDR-- 450 (1097)
Q Consensus 383 ~V~~v~~sp-d~~~las~~~-dg~i~iwd~~~~~~~~~~~~l~-~h~~~V~~l~~-------s~d~~~~~l~s~s~d~-- 450 (1097)
....|+|+| ++..|..+.. .+.|++.|..++.... ..... +.......++| ++++. .|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~--~lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAE--YMIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTC--EEEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCC--EEEEEeCCCCC
Confidence 577999999 4555555544 4678888888876432 21111 12335899999 99998 445444433
Q ss_pred -----cEEEEECCC-Ccee-----EEeecCCcCeEEEeecccCCccEEEEEcCCCeEEEEEcC-------CCCc------
Q 001336 451 -----VIKVWDAVT-GTKQ-----YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD-------NLGS------ 506 (1097)
Q Consensus 451 -----~i~iwd~~~-~~~~-----~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-------~~~~------ 506 (1097)
.|.+.+... |... ..+... .....+++++. ++.++++-..++.|..+|++ ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 366676443 2221 222211 12334566432 45667777788899999987 4432
Q ss_pred -----e-eeec-CCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeC--CCCee--eEEecCC---C---C--------
Q 001336 507 -----R-VDYD-APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE--SEGAV--KRTYHGL---G---K-------- 561 (1097)
Q Consensus 507 -----~-~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~--~~~~~--~~~~~~~---~---~-------- 561 (1097)
. .... ........++|+|+|+.|+.+-. ....|+.++. ..+.. ...+.+. . +
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 0 1111 22345689999999996665532 3557888554 33332 1222221 0 0
Q ss_pred cceE-EEEEc-------CCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC----------------------CCCcceE
Q 001336 562 RSVG-VVQFD-------TTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG----------------------LQASPCI 611 (1097)
Q Consensus 562 ~~v~-~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------------~~~v~~v 611 (1097)
.... .++.. .++.++++=..+..|+.++ .+|. +.++.+.+. ...-..|
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 1123 45554 4555555556788999998 4554 444433211 1123467
Q ss_pred EEcCC-CCEEEEEECCCcEEEEEcCCC
Q 001336 612 RFNKE-GILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 612 ~~s~~-~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
+++++ +.++++=...+.||.++++..
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 88886 555555555677888777654
No 301
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.67 E-value=0.019 Score=60.89 Aligned_cols=194 Identities=11% Similarity=0.136 Sum_probs=120.8
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeecCCcCeEEEeeccc--CCcc---EEEEE-cC--CCeEEEEEcCCCC-ceeeecC
Q 001336 442 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHK--ENIQ---FIFST-AT--DGKIKAWLYDNLG-SRVDYDA 512 (1097)
Q Consensus 442 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~---~l~s~-~~--dg~i~iwd~~~~~-~~~~~~~ 512 (1097)
+++.....+-+.++|+ +|+.++.+.. +.++.+.+-+. -+|+ ++++. -. +++|.+|+++... ....+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 5666777889999998 9999988864 45666654331 0111 23333 33 5899999875222 2222211
Q ss_pred ------CC-CceEEEEE--ccC-CCE-EEEeeeCCCCCceEEEEeC-------CCCeeeEEecCCCCcceEEEEEcCCCC
Q 001336 513 ------PG-HSSTMMAY--SAD-GAR-LFSCGTNKEGESYLVEWNE-------SEGAVKRTYHGLGKRSVGVVQFDTTKN 574 (1097)
Q Consensus 513 ------~~-~~v~~~~~--s~~-~~~-l~~~~~~~~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~ 574 (1097)
.. ..+..+++ +|. +++ +++... ++.+..|++ .+.+.++++.... .+..+...+...
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd~~g 192 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADDEYG 192 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEETTTT
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcCCCC
Confidence 12 46677787 774 443 444332 346877777 2346778877654 577888888889
Q ss_pred EEEEEeCCCcEEEEECC-----CCceEEEEecCCCCCCcceEEE--cCCCC-EEEEEE-CCCcEEEEEcCCCceEEEEe
Q 001336 575 RFLAAGDEFMIKFWDMD-----NVNLLASIDADGGLQASPCIRF--NKEGI-LLAVST-NDNGIKILANADGIRLLRTV 644 (1097)
Q Consensus 575 ~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--s~~~~-~l~s~~-~dg~i~iw~~~~~~~~~~~~ 644 (1097)
.|+.+-++..|..++.+ +++.+..+....-...+..+++ .++++ +|++.+ .++++.+|+.....+.+..+
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 99999998777777755 3445555432222235677777 44555 565555 56799999997433555544
No 302
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.66 E-value=0.076 Score=55.01 Aligned_cols=261 Identities=8% Similarity=0.086 Sum_probs=155.7
Q ss_pred CceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCC
Q 001336 539 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI 618 (1097)
Q Consensus 539 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 618 (1097)
...|.+.|+..+..+.+-.-. ..+.-.+|..+.++.-. ...+.++|+++.+.+...... ..|.--.|-.+ +
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~----AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~---e~VvfWkWis~-~ 118 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWISL-N 118 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECC----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS---SCEEEEEECSS-S
T ss_pred CCEEEEEECCCCCCccccccc----cceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC---CccEEEEecCC-C
Confidence 346888999886544332221 12345688888777766 688999999999999888764 24555555543 4
Q ss_pred EEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCC
Q 001336 619 LLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRN 698 (1097)
Q Consensus 619 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1097)
.|+-.+. ..|+-|++.....+.+.+..|..-
T Consensus 119 ~L~lVT~-taVyHWs~~~~s~P~kvFdR~~~L------------------------------------------------ 149 (365)
T 2xzh_A 119 TVALVTD-NAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 149 (365)
T ss_dssp EEEEEES-SEEEEEESSTTCCCEEEEECCGGG------------------------------------------------
T ss_pred eEEEEcC-CcEEEEcccCCCCCceeeecchhc------------------------------------------------
Confidence 5665554 489999987654555555443211
Q ss_pred ccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeecc-------CcEEEEeccCCC
Q 001336 699 FTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS-------NAVHKLWKWPRN 771 (1097)
Q Consensus 699 ~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~-------dg~i~vw~~~~~ 771 (1097)
....|-....+++.++++..+- .|.+.+|..++
T Consensus 150 ---------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er- 189 (365)
T 2xzh_A 150 ---------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR- 189 (365)
T ss_dssp ---------------------------------------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-
T ss_pred ---------------------------------------ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-
Confidence 1234555556666666554432 25666665442
Q ss_pred CCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEcc---CCCEEEEEe----CCeEEEEEcCCC---c---
Q 001336 772 ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK---NDSYVMSAS----GGKISLFNMMTF---K--- 838 (1097)
Q Consensus 772 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~---dg~~la~~s----dg~i~iwd~~~~---~--- 838 (1097)
+.-. .+.| |...-..+.+.. ..++++.+. .+++.|.++... .
T Consensus 190 ---------------------~~sQ--~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f 244 (365)
T 2xzh_A 190 ---------------------KVSQ--PIEG--HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 244 (365)
T ss_dssp ---------------------TEEE--EECC--SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCC
T ss_pred ---------------------cccc--eeee--eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCc
Confidence 2211 1222 322221111111 112334333 267999998432 1
Q ss_pred ---eeEEeCCC---CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCC
Q 001336 839 ---TMTTFMPP---PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS 912 (1097)
Q Consensus 839 ---~~~~~~~~---~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg 912 (1097)
.+..+-.+ .+-..++..|+ .-.++..-+.-|.+++||+.++.++..-+--...|..-+-..+..=++.....|
T Consensus 245 ~kk~vdi~fppea~~DFPVamqvs~-kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~G 323 (365)
T 2xzh_A 245 PKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG 323 (365)
T ss_dssp CCEEEEECCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTC
T ss_pred ccccceeeCCccccCCceEEEEecc-cCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCC
Confidence 11112222 23367888888 666888899999999999999999988776677777666555544555566788
Q ss_pred cEEEEEcCCCc
Q 001336 913 QLCVWSTDGWE 923 (1097)
Q Consensus 913 ~i~iwd~~~~~ 923 (1097)
.|.--.++...
T Consensus 324 qVl~v~v~~~~ 334 (365)
T 2xzh_A 324 QVLSVCVEEEN 334 (365)
T ss_dssp EEEEEEECTTT
T ss_pred EEEEEEECccc
Confidence 77766666533
No 303
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.48 E-value=0.021 Score=59.94 Aligned_cols=203 Identities=12% Similarity=0.078 Sum_probs=125.7
Q ss_pred CCeeEEEEccCCCEEEEEe--CCeEEEEEcCCCceeEE-eCC----CCC--CeEEEEE---eCCCCCEEEEEEC------
Q 001336 807 DAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTT-FMP----PPP--AATFLAF---HPQDNNIIAIGME------ 868 (1097)
Q Consensus 807 ~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~-~~~----~~~--~i~~l~~---sp~~~~~la~g~~------ 868 (1097)
....++.|.+....+..++ .++|..|+...+..... +.+ ... .+..+.| .| +++++++...
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccc
Confidence 3445789988666666666 79999999976644333 221 111 3678999 68 6778876542
Q ss_pred -------CCcEEEEEcc---cceEEEEec--ccc-----------cCeEEEEEecCCCEEEEEeCC-CcEEEEEcCCCcc
Q 001336 869 -------DSSIQIYNVR---VDEVKTKLK--GHQ-----------KRITGLAFSNTLNVLVSSGAD-SQLCVWSTDGWEK 924 (1097)
Q Consensus 869 -------dg~v~vwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~dg~~l~s~~~D-g~i~iwd~~~~~~ 924 (1097)
+..|..||+. +++.+.... ... .....++..++|+..++++.- +.|...+.+....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~ 171 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV 171 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE
Confidence 6789999999 777654433 221 247899999999999998888 7766666654321
Q ss_pred cceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-eCCeEEEEeCCCcceeeeeecc--C---CCCCEEEE-EEecCCCE
Q 001336 925 QASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPR--E---ASGPITHA-TYSCDSQS 997 (1097)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~d~~v~vwd~~~~~~~~~~~~~--~---h~~~v~~v-~~s~dg~~ 997 (1097)
................+.++++|||..|++. ..+.+..+|+.+.... .+... + .-.....+ ..-.+|+.
T Consensus 172 ---~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~v 247 (334)
T 2p9w_A 172 ---STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNES 247 (334)
T ss_dssp ---EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred ---eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCEE
Confidence 1111111111111457899999999988884 5899999998843220 12111 1 11234443 44457888
Q ss_pred -EEEEecCCeEEEEeCCC
Q 001336 998 -IYVAFEEGSVGVLTAST 1014 (1097)
Q Consensus 998 -l~s~s~Dg~v~vwd~~~ 1014 (1097)
|++....+.+.+..-+.
T Consensus 248 llV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 248 VLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEETTEEEEEECSST
T ss_pred EEEEcCCCCEEEEECCCC
Confidence 55555566555555443
No 304
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.47 E-value=0.14 Score=53.13 Aligned_cols=232 Identities=13% Similarity=0.123 Sum_probs=151.6
Q ss_pred EEEEccCCCEEEEEeCCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEccc-ceEEEEeccc
Q 001336 811 CFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-DEVKTKLKGH 889 (1097)
Q Consensus 811 ~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~-~~~~~~l~~h 889 (1097)
+.-++|..+.||.-...+++|+|+++.+.++.+.- ...|.-=.|-. .+.|+..+ +..|+-|++.. ..+.+.+..|
T Consensus 71 sAIMnP~~~ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEECS--SSEEEEEE-SSEEEEEESSTTCCCEEEEECC
T ss_pred eeeeCCCccEEEEecCCeEEEechHHhhhhcceec-CCccEEEEecC--CCeEEEEc-CCcEEEEcccCCCCCceeeecc
Confidence 45678999999888888999999999988888764 45676667764 45777666 56799999974 3455555554
Q ss_pred c----cCeEEEEEecCCCEEEEEeC-------CCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCC-----c
Q 001336 890 Q----KRITGLAFSNTLNVLVSSGA-------DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQ-----T 953 (1097)
Q Consensus 890 ~----~~V~~l~~s~dg~~l~s~~~-------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg-----~ 953 (1097)
. ..|..-..+++.++++..|- .|.+.+|..+.+. -+..+||.. .=..+-.+| .
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~~ 215 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEEST 215 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE------EEEECCSEE-----EEEEECCTTCSSCEE
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc------cceeeeeee-----eeEEEecCCCCCCce
Confidence 3 45777788899998886553 3678899988743 445555541 101122222 2
Q ss_pred EEEEEe----CCeEEEEeCCCc---ce------eee-eeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceee
Q 001336 954 HLLAVH----ETQIAIYEAPKL---EC------LKQ-FVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRC 1019 (1097)
Q Consensus 954 ~l~~~~----d~~v~vwd~~~~---~~------~~~-~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~ 1019 (1097)
+++.+. .+.+.|-++... .. +.. +.......-..++..|+.-..+...+.-|.|.+||++++.++.
T Consensus 216 lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 216 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 295 (365)
T ss_dssp EEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEE
Confidence 333332 268888888432 11 111 1122235556788888888888888899999999999999987
Q ss_pred eeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCC
Q 001336 1020 RINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEA 1067 (1097)
Q Consensus 1020 ~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~ 1067 (1097)
+-..+. ..|..- +.+. ...-++.....|.|.--.+.+.
T Consensus 296 ~nrIS~-------d~iF~t--a~~~-~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 296 MNRISG-------ETIFVT--APHE-ATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEECCS-------SCEEEE--EEEG-GGTEEEEEETTCEEEEEEECTT
T ss_pred EeccCC-------CceEEe--cccC-CCCcEEEEcCCCEEEEEEECcc
Confidence 666443 445433 2223 3345666668887776665543
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.41 E-value=0.0011 Score=79.87 Aligned_cols=232 Identities=7% Similarity=0.008 Sum_probs=131.0
Q ss_pred CCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCC----CceeEEeecCCcCeEEEe
Q 001336 402 KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT----GTKQYIFEGHESPVYSIC 477 (1097)
Q Consensus 402 dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~----~~~~~~~~~h~~~v~~~~ 477 (1097)
.+.|++.++.+.+... +......+..++|.+.+.. ++++-...+.|+.+++.+ ......+.........++
T Consensus 385 ~~~I~~id~~~~~~~~----~~~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp TTC-CEECTTSCCEEC----CSCCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred ccceEEEeCCCCccee----eeccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 3457777777654332 1122334678999987763 344445567899999875 222222211112234566
Q ss_pred ecccCCccEEEEEcCCCeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEec
Q 001336 478 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 557 (1097)
Q Consensus 478 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 557 (1097)
+.+. ++.++++-...+.|.+++++.......+.........++++|.+.+|+..... ....|..+++.... ...+.
T Consensus 460 vD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~--~~~~I~~~~~dG~~-~~~l~ 535 (699)
T 1n7d_A 460 VDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVD-IYSLV 535 (699)
T ss_dssp CCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS--SSCCEEBCCSSSCC-CCEES
T ss_pred EEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC--CCCeEEEEeCCCCC-eeEEE
Confidence 6432 33555555667889999887554443333333456788999976666654321 12468777765432 22222
Q ss_pred CCCCcceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001336 558 GLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 636 (1097)
Q Consensus 558 ~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~ 636 (1097)
.........++++|++..|+.+. ..+.|.+++++.......+...........+++..+ .++++....+.|..++..+
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence 11122456799998876665554 678899999975444433332111223345666544 4455555668899988777
Q ss_pred CceEEEEe
Q 001336 637 GIRLLRTV 644 (1097)
Q Consensus 637 ~~~~~~~~ 644 (1097)
+ +....+
T Consensus 615 G-~~~~~i 621 (699)
T 1n7d_A 615 G-SDVNLL 621 (699)
T ss_dssp E-EEEECC
T ss_pred C-CceEEe
Confidence 6 444444
No 306
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.36 E-value=0.24 Score=53.47 Aligned_cols=261 Identities=9% Similarity=0.089 Sum_probs=158.5
Q ss_pred CceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCC
Q 001336 539 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI 618 (1097)
Q Consensus 539 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 618 (1097)
...|.+.|+..+..+..-.-. ..+.-.+|..+.++.-. ...+.|||+++...+....... .|.--.|-.+ +
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e---~VvfWkWis~-~ 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL-N 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEEEET-T
T ss_pred CCeEEEEECCCCCcceecccc----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC---CceEEEecCC-C
Confidence 447889999886544332221 12356788887777665 7899999999999998887642 4555555543 4
Q ss_pred EEEEEECCCcEEEEEcCCCceEEEEecccccccccccccccccCCcccccccCccccccccccccccccccccCCCCCCC
Q 001336 619 LLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRN 698 (1097)
Q Consensus 619 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1097)
.|+..+. ..|+-|++.....+.+.+..|..-
T Consensus 118 ~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L------------------------------------------------ 148 (494)
T 1bpo_A 118 TVALVTD-NAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 148 (494)
T ss_dssp EEEEECS-SEEEEEESSSSCCCEEEEECCGGG------------------------------------------------
T ss_pred eEEEEcC-CeeEEecccCCCCchhheecchhc------------------------------------------------
Confidence 5555554 489999987654555555443211
Q ss_pred ccccCcccccccccccccccccccCCCceeeEeccCCCcCccceEEEEEccCCceeeeecc-------CcEEEEeccCCC
Q 001336 699 FTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS-------NAVHKLWKWPRN 771 (1097)
Q Consensus 699 ~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~-------dg~i~vw~~~~~ 771 (1097)
....|-....+++.++++..+- .|.+.+|..++
T Consensus 149 ---------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er- 188 (494)
T 1bpo_A 149 ---------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR- 188 (494)
T ss_dssp ---------------------------------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-
T ss_pred ---------------------------------------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-
Confidence 1234555566667776654432 35666665442
Q ss_pred CCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEccC---CCEEEEEe----CCeEEEEEcCCC---c---
Q 001336 772 ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN---DSYVMSAS----GGKISLFNMMTF---K--- 838 (1097)
Q Consensus 772 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s~d---g~~la~~s----dg~i~iwd~~~~---~--- 838 (1097)
+.-. .+.| |...-..+.+..+ .++++.+. .+++.|.++... .
T Consensus 189 ---------------------~~sQ--~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f 243 (494)
T 1bpo_A 189 ---------------------KVSQ--PIEG--HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 243 (494)
T ss_dssp ---------------------CCEE--EECC--SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC
T ss_pred ---------------------cccc--hhee--eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc
Confidence 2211 1222 3333222222211 12444444 278999998542 1
Q ss_pred ---eeEEeCCC---CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecccccCeEEEEEecCCCEEEEEeCCC
Q 001336 839 ---TMTTFMPP---PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS 912 (1097)
Q Consensus 839 ---~~~~~~~~---~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg 912 (1097)
.+..+-.+ .+-..++..|+ .-.++..-+.-|.|++||+.++.++..-+--...|..-+-..+..=++.....|
T Consensus 244 ~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~G 322 (494)
T 1bpo_A 244 PKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG 322 (494)
T ss_dssp CCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTC
T ss_pred cceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCc
Confidence 11111112 23367888898 667888999999999999999999987776677777666665555566666788
Q ss_pred cEEEEEcCCCc
Q 001336 913 QLCVWSTDGWE 923 (1097)
Q Consensus 913 ~i~iwd~~~~~ 923 (1097)
.|.--.++...
T Consensus 323 qVl~v~v~e~~ 333 (494)
T 1bpo_A 323 QVLSVCVEEEN 333 (494)
T ss_dssp EEEEEEECTTT
T ss_pred eEEEEEEcccc
Confidence 77766666533
No 307
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.32 E-value=0.068 Score=58.24 Aligned_cols=196 Identities=11% Similarity=0.066 Sum_probs=105.6
Q ss_pred CeeEEEEccCCCEEEEEeCCeEEEEEcCCCce--eEEeC---CCCCCeEEEEEeCCC----CCEEEEEECC-----CcEE
Q 001336 808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MTTFM---PPPPAATFLAFHPQD----NNIIAIGMED-----SSIQ 873 (1097)
Q Consensus 808 ~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~--~~~~~---~~~~~i~~l~~sp~~----~~~la~g~~d-----g~v~ 873 (1097)
....++|.|||+++++-.+|.|++++ +++. +..+. ........++|+| + +.++++-... +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEEE
Confidence 46799999999976665589999998 4432 22221 1235689999999 5 4444443332 6788
Q ss_pred EEEcccc-----eE-EEEec---ccccCeEEEEEecCCCEEEEEeCC-------------CcEEEEEcCCCccc------
Q 001336 874 IYNVRVD-----EV-KTKLK---GHQKRITGLAFSNTLNVLVSSGAD-------------SQLCVWSTDGWEKQ------ 925 (1097)
Q Consensus 874 vwd~~~~-----~~-~~~l~---~h~~~V~~l~~s~dg~~l~s~~~D-------------g~i~iwd~~~~~~~------ 925 (1097)
.|+...+ +. +..+. +.......++|.|||.+.++.+.. |.|.-++.+. +..
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~ 187 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFL 187 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCccc
Confidence 8887643 11 22233 111123689999999877765432 3455455432 100
Q ss_pred -----ceeeEeecCCCCCCccCCeEEEEcC-CCcEEEEE-eCCeE------EEEeCCCcce----------------eee
Q 001336 926 -----ASKFLTIPNGRTASALADTRVQFHL-DQTHLLAV-HETQI------AIYEAPKLEC----------------LKQ 976 (1097)
Q Consensus 926 -----~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~l~~~-~d~~v------~vwd~~~~~~----------------~~~ 976 (1097)
...... .++ .....++|+| +|.+.++- ..+.+ .|.-+..+.. ...
T Consensus 188 ~~~~~~~~i~a--~G~----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 188 GRRGARPEVYS--LGH----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp TCTTSCTTEEE--ECC----SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCCCCccEEE--EcC----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 000110 111 1246789999 66665552 22221 2333332220 001
Q ss_pred eeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCC
Q 001336 977 FVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL 1015 (1097)
Q Consensus 977 ~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~ 1015 (1097)
+.. .+......++| .+|.++++.-..+.|...+++..
T Consensus 262 ~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~ 298 (352)
T 2ism_A 262 YFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGE 298 (352)
T ss_dssp EEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEE
T ss_pred Eec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCC
Confidence 111 12345678888 57777776666677877776643
No 308
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.30 E-value=0.069 Score=58.15 Aligned_cols=228 Identities=11% Similarity=0.067 Sum_probs=123.0
Q ss_pred CCeeEEEEccCCCEEEEEeCCeEEEEEcCCCc-eeEEeC---CCCCCeEEEEEeCC---CCCEEEEEEC---C----CcE
Q 001336 807 DAVPCFALSKNDSYVMSASGGKISLFNMMTFK-TMTTFM---PPPPAATFLAFHPQ---DNNIIAIGME---D----SSI 872 (1097)
Q Consensus 807 ~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~-~~~~~~---~~~~~i~~l~~sp~---~~~~la~g~~---d----g~v 872 (1097)
.....++|.|||+++++-.+|.|++++. +++ .+..+. ........++++|+ ++.++++-.. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 3468999999999776655899999973 454 222221 12356889999993 2444444332 3 567
Q ss_pred EEEEcccc-------eEE-EEec---ccccCeEEEEEecCCCEEEEEeCC-------------CcEEEEEcCCCccc---
Q 001336 873 QIYNVRVD-------EVK-TKLK---GHQKRITGLAFSNTLNVLVSSGAD-------------SQLCVWSTDGWEKQ--- 925 (1097)
Q Consensus 873 ~vwd~~~~-------~~~-~~l~---~h~~~V~~l~~s~dg~~l~s~~~D-------------g~i~iwd~~~~~~~--- 925 (1097)
..|+.... +.+ ..+. .|. ...|+|.|||.++++.+.. |.|.-++.+..-..
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 77776543 111 1122 232 3679999999877775432 34444444321000
Q ss_pred --ceeeEeecCCCCCCccCCeEEEEcC-CCcEEEEE--eCC--eEEEEeCCCcce----------------eeeeeccCC
Q 001336 926 --ASKFLTIPNGRTASALADTRVQFHL-DQTHLLAV--HET--QIAIYEAPKLEC----------------LKQFVPREA 982 (1097)
Q Consensus 926 --~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~l~~~--~d~--~v~vwd~~~~~~----------------~~~~~~~~h 982 (1097)
..... ..++ .....++|+| +|.+.++- .+. .|.+.. .+.. ...+.....
T Consensus 186 f~~~~i~--a~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~ 257 (354)
T 3a9g_A 186 FPNSPIW--SYGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSE 257 (354)
T ss_dssp STTCCEE--EECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred CCCCcEE--EEcc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCC
Confidence 00111 1111 2356899999 67665552 222 233322 2210 001111011
Q ss_pred CCCEEEEEEe-------cCCCEEEEEecCCeEEEEeCCCC-cee--eeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEE
Q 001336 983 SGPITHATYS-------CDSQSIYVAFEEGSVGVLTASTL-RLR--CRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFAL 1052 (1097)
Q Consensus 983 ~~~v~~v~~s-------~dg~~l~s~s~Dg~v~vwd~~~~-~~~--~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s 1052 (1097)
......++|. .+|.++++....+.|...++... +.. ..+. . +-..++ ..+++.| |+.++++
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-----~-~~~~rp--~~v~~~p-DG~lyv~ 328 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-----K-NVFGRL--RDVVIDD-DGGILIS 328 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-----T-TTSCCE--EEEEECT-TSCEEEE
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-----c-CCCCCe--eEEEECC-CCcEEEE
Confidence 3467888883 67877777666788888888753 221 1121 1 111233 4557778 5777776
Q ss_pred Ee
Q 001336 1053 GL 1054 (1097)
Q Consensus 1053 ~~ 1054 (1097)
..
T Consensus 329 ~~ 330 (354)
T 3a9g_A 329 TS 330 (354)
T ss_dssp EC
T ss_pred Ee
Confidence 64
No 309
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.30 E-value=0.041 Score=59.98 Aligned_cols=230 Identities=11% Similarity=0.026 Sum_probs=118.2
Q ss_pred CCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeee---ecccCcEEEEEEecC---CCcEEEEEEeCC-----C
Q 001336 382 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEI---EAHVGSVNDLAFSYP---NKQLSVVTCGED-----R 450 (1097)
Q Consensus 382 ~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l---~~h~~~V~~l~~s~d---~~~~~l~s~s~d-----~ 450 (1097)
.....++|.|||++++ +..+|.|.+++ +++ ......+ .........|+|+|+ +.. +.++-... +
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~-lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPY-VYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCCE-EEEEEecCCCCCcc
Confidence 3567999999999554 56679999888 443 2221111 122456889999998 553 33333322 5
Q ss_pred cEEEEECCCCc-----eeE-Eee---cCCcCeEEEeecccCCccEEEEEcCC-------------CeEEEEEcCCC----
Q 001336 451 VIKVWDAVTGT-----KQY-IFE---GHESPVYSICPHHKENIQFIFSTATD-------------GKIKAWLYDNL---- 504 (1097)
Q Consensus 451 ~i~iwd~~~~~-----~~~-~~~---~h~~~v~~~~~~~~~~~~~l~s~~~d-------------g~i~iwd~~~~---- 504 (1097)
.|..++...+. .+. .+. +.......++| .++|.+.++.+.. |.|.-++.+..
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~--~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAF--GPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEE--CTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEE--CCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 78888876442 111 132 11112346777 5566666654321 45555554420
Q ss_pred --------CceeeecCCCCceEEEEEcc-CCCEEEEeeeCCCC-----CceEEEEeCCC----------------CeeeE
Q 001336 505 --------GSRVDYDAPGHSSTMMAYSA-DGARLFSCGTNKEG-----ESYLVEWNESE----------------GAVKR 554 (1097)
Q Consensus 505 --------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-----~~~i~~wd~~~----------------~~~~~ 554 (1097)
.....+.........++|+| ++++.++-. ..+. ...|.+..... ...+.
T Consensus 184 npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~-g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 184 NPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEH-GPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEE-CC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEc-CCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 00011111112356789999 566555432 2111 01233322111 01122
Q ss_pred EecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce------EEEEecCCCCCCcceEEEcCCCCEEEEEE
Q 001336 555 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL------LASIDADGGLQASPCIRFNKEGILLAVST 624 (1097)
Q Consensus 555 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 624 (1097)
.+..+. ....++| .+|..+++.-..+.|...+++.... ...+-. ....+..+++.|||.+.++..
T Consensus 263 ~~~~~~--ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 263 FWPQGF--PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp ECTTCC--CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred ecCCCC--CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence 222111 3455666 4565555555677788877764431 112211 134678999999997776654
No 310
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.18 E-value=0.066 Score=56.24 Aligned_cols=163 Identities=12% Similarity=0.098 Sum_probs=106.9
Q ss_pred CeeEEEEccCCCeEEEEEeCCCeEEEEEcCCCceeeeeeeeEeeccccCcccccccc--CCCCCCeEEEEE---ccCCCE
Q 001336 321 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLS--SDYTASVNRVMW---SPDGTL 395 (1097)
Q Consensus 321 ~V~~v~fspdg~~lla~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~v~~---spd~~~ 395 (1097)
-..+++|++....++++.-..|+|..||...+..... .+ .. +. ......+..|.| .|++++
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~------------~~-~s~~g~~~~~~sGl~~~~~D~~grL 79 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VI------------DG-ASSNGDGEQQMSGLSLLTHDNSKRL 79 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CC------------TT-TCCSSCCSEEEEEEEESSSSSCCEE
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ec------------CC-ccccCCCcceeeEEEEeccCCCCcE
Confidence 3448999987776766666899999999986643321 00 00 00 011124689999 688888
Q ss_pred EEEEEC-------------CCEEEEEEcc---CCeeeeeeeeeeccc-----------CcEEEEEEecCCCcEEEEEEeC
Q 001336 396 FGVAYS-------------KHIVHLYTYH---GGDELRNHLEIEAHV-----------GSVNDLAFSYPNKQLSVVTCGE 448 (1097)
Q Consensus 396 las~~~-------------dg~i~iwd~~---~~~~~~~~~~l~~h~-----------~~V~~l~~s~d~~~~~l~s~s~ 448 (1097)
+++... +..|..||+. +++.+... .|.+.. .....++..++|+ ..++++.
T Consensus 80 ~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~ 156 (334)
T 2p9w_A 80 FAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFAL 156 (334)
T ss_dssp EEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEE
T ss_pred EEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeCCC
Confidence 876542 6789999999 77654322 233221 2488999999999 7888888
Q ss_pred C-CcEEEEECCCCceeEEeec------CCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCC
Q 001336 449 D-RVIKVWDAVTGTKQYIFEG------HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 503 (1097)
Q Consensus 449 d-~~i~iwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 503 (1097)
. +.|...+.. |+.+..+.. .....+.|++ .++|..|+.....|.|..+|+..
T Consensus 157 ~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~--~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 157 GMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITF--DPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp SSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEE--ETTTTEEEEESSSSSEEEEECSS
T ss_pred CCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEE--eCCCCEEEEEcCCCeEEEEcCCC
Confidence 8 887777744 443333211 1122557888 45567777776699999999884
No 311
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.13 E-value=0.23 Score=53.94 Aligned_cols=233 Identities=9% Similarity=-0.051 Sum_probs=121.9
Q ss_pred CCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeee---ecccCcEEEEEEecC---CCcEEEEEEeC---C---
Q 001336 382 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEI---EAHVGSVNDLAFSYP---NKQLSVVTCGE---D--- 449 (1097)
Q Consensus 382 ~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l---~~h~~~V~~l~~s~d---~~~~~l~s~s~---d--- 449 (1097)
.....++|.|||+ |.++..+|.|++++ .+++ .....+ .........|+|+|+ +.. +.++-+. +
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSW-VYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEEC-SSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCc--eEeeccceeecCCCceeeEEeCCCCCcCCE-EEEEEeccCCCCCc
Confidence 4678999999998 55556679998887 3444 222111 122356889999998 553 3333332 3
Q ss_pred -CcEEEEECCCC--c-----ee-EEeec-CCcCeEEEeecccCCccEEEEEcC-------------CCeEEEEEcCCCC-
Q 001336 450 -RVIKVWDAVTG--T-----KQ-YIFEG-HESPVYSICPHHKENIQFIFSTAT-------------DGKIKAWLYDNLG- 505 (1097)
Q Consensus 450 -~~i~iwd~~~~--~-----~~-~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~~- 505 (1097)
+.|..|+...+ . .+ ..+.. .......++| .++|.+.++.+. .|.|.-++.+..-
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~--~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p 181 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRF--GPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP 181 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEE--CTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEE--CCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence 56777876654 1 11 11221 1112345777 556676666443 2455555443210
Q ss_pred ------ceeeecCCCCceEEEEEcc-CCCEEEEeeeCCCCCceEEEEeCCC--------C--------eeeEEecCCCCc
Q 001336 506 ------SRVDYDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNESE--------G--------AVKRTYHGLGKR 562 (1097)
Q Consensus 506 ------~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~--------~--------~~~~~~~~~~~~ 562 (1097)
....+.........++|+| +|++.++-.. .+....|.+..... + ..+..+.... .
T Consensus 182 ~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g-~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~-~ 259 (354)
T 3a9g_A 182 ADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHG-PVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSET-W 259 (354)
T ss_dssp TTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECC-SSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCC-C
T ss_pred CCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecC-CCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCC-c
Confidence 0011111112456899999 6665555332 21112233322110 0 1222221111 2
Q ss_pred ceEEEEEc-------CCCCEEEEEeCCCcEEEEECCCC-ceE--EEEecCCCCCCcceEEEcCCCCEEEEEE
Q 001336 563 SVGVVQFD-------TTKNRFLAAGDEFMIKFWDMDNV-NLL--ASIDADGGLQASPCIRFNKEGILLAVST 624 (1097)
Q Consensus 563 ~v~~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 624 (1097)
....+.|. .+|.++++.-..+.|...+++.. +.. ..+-. +....+..+++.|||.+.++..
T Consensus 260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~-~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK-NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT-TTSCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc-CCCCCeeEEEECCCCcEEEEEe
Confidence 46677773 46666666557788888888753 332 22211 1234678999999997666654
No 312
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.12 E-value=0.072 Score=56.79 Aligned_cols=234 Identities=9% Similarity=-0.011 Sum_probs=119.5
Q ss_pred CeEEEEEeCC--CeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECC----CEE
Q 001336 332 QILLVVGTNM--GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK----HIV 405 (1097)
Q Consensus 332 ~~lla~gs~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~d----g~i 405 (1097)
.+|++.|+.+ ..+.+||..+++-.... . ++ .....-.++. -+++.++.|+.+ ..+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~----------~--~p-----~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~ 72 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIR----------C--PF-----EKRRDAACVF--WDNVVYILGGSQLFPIKRM 72 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECC----------C--CS-----CCCBSCEEEE--ETTEEEEECCBSSSBCCEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCC----------C--CC-----cccceeEEEE--ECCEEEEEeCCCCCCcceE
Confidence 4577777653 57888998877543210 0 01 1111122222 267777888765 678
Q ss_pred EEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCC------CcEEEEECCCCceeEEeecCCcCe-EEEee
Q 001336 406 HLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED------RVIKVWDAVTGTKQYIFEGHESPV-YSICP 478 (1097)
Q Consensus 406 ~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d------~~i~iwd~~~~~~~~~~~~h~~~v-~~~~~ 478 (1097)
.+||..+++- .....+......-.++.+ +++ +++.|+.+ ..+.+||..+.+....-....... .+++.
T Consensus 73 ~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 147 (306)
T 3ii7_A 73 DCYNVVKDSW-YSKLGPPTPRDSLAACAA--EGK--IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE 147 (306)
T ss_dssp EEEETTTTEE-EEEECCSSCCBSCEEEEE--TTE--EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred EEEeCCCCeE-EECCCCCccccceeEEEE--CCE--EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE
Confidence 8999988753 222222211111222222 555 66777655 468999998876543211111111 11221
Q ss_pred cccCCccEEEEEcC---------CCeEEEEEcCCCCceeeecCCCCc-eEEEEEccCCCEEEEeeeCCCC-CceEEEEeC
Q 001336 479 HHKENIQFIFSTAT---------DGKIKAWLYDNLGSRVDYDAPGHS-STMMAYSADGARLFSCGTNKEG-ESYLVEWNE 547 (1097)
Q Consensus 479 ~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~-~~~i~~wd~ 547 (1097)
. ++.+++.|+. -..+.+||+.+..-...-...... -.+++. -+++.++.++.+... ...+.+||+
T Consensus 148 --~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~ 223 (306)
T 3ii7_A 148 --A-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDI 223 (306)
T ss_dssp --E-TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEET
T ss_pred --E-CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeC
Confidence 1 3356666653 345778888765432221111111 112222 266777777654321 235889999
Q ss_pred CCCeeeEE--ecCCCCcceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceE
Q 001336 548 SEGAVKRT--YHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLL 596 (1097)
Q Consensus 548 ~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~ 596 (1097)
.+.+-... +..... ...++.+ ++..++.|+.+ ..+.+||..+.+-.
T Consensus 224 ~~~~W~~~~~~p~~r~-~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 224 KLNEWKMVSPMPWKGV-TVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp TTTEEEECCCCSCCBS-CCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred CCCcEEECCCCCCCcc-ceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 87643322 221111 2222333 56677777743 46888998876543
No 313
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.04 E-value=0.029 Score=59.79 Aligned_cols=194 Identities=9% Similarity=0.007 Sum_probs=97.6
Q ss_pred CCCEEEEEECC-----CEEEEEEccCCee--eeeeeeeecccCcEEEEEEecCCCcEEEEEEeCC-----CcEEEEECCC
Q 001336 392 DGTLFGVAYSK-----HIVHLYTYHGGDE--LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RVIKVWDAVT 459 (1097)
Q Consensus 392 d~~~las~~~d-----g~i~iwd~~~~~~--~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d-----~~i~iwd~~~ 459 (1097)
+++.++.|+.+ ..+.+||..+++. ......+......-.++.+ +++ +++.|+.+ ..+.++|+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDM--IYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTE--EEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCE--EEEEcccCCCcccceEEEEcCCC
Confidence 67777888765 3588999887650 1111122211111222222 455 56666643 3688999888
Q ss_pred CceeEEeecCCcCe-EEEeecccCCccEEEEEcCC-----CeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEee
Q 001336 460 GTKQYIFEGHESPV-YSICPHHKENIQFIFSTATD-----GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG 533 (1097)
Q Consensus 460 ~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 533 (1097)
.+....-....... .+++. . ++.+++.|+.+ ..+.+||+.+..-...-..........+..-+++.++.++
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG 214 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVV--A-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGG 214 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEE--E-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECC
T ss_pred CeEEECCCCCCCcccceEEE--E-CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeC
Confidence 76543221111111 11222 1 34677777654 4578888776543322111111111111223667777776
Q ss_pred eCCCC-CceEEEEeCCCCeeeEEecCCCC-cceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc
Q 001336 534 TNKEG-ESYLVEWNESEGAVKRTYHGLGK-RSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVN 594 (1097)
Q Consensus 534 ~~~~~-~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 594 (1097)
.++.. ...+.+||+.+.+-...-..... .....+.+ ++..++.|+.+ ..|.+||..+.+
T Consensus 215 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 215 FDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp BCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 54432 34689999987754333221111 11222222 55666777644 357778877654
No 314
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.02 E-value=0.12 Score=56.38 Aligned_cols=238 Identities=12% Similarity=0.105 Sum_probs=123.9
Q ss_pred CeeEEEEccCCC-EEEEEeCCeEEEEEcCCCceeEE---e----CCCCCCeEEEEEeCC---CCCEEEEEEC-------C
Q 001336 808 AVPCFALSKNDS-YVMSASGGKISLFNMMTFKTMTT---F----MPPPPAATFLAFHPQ---DNNIIAIGME-------D 869 (1097)
Q Consensus 808 ~v~~l~~s~dg~-~la~~sdg~i~iwd~~~~~~~~~---~----~~~~~~i~~l~~sp~---~~~~la~g~~-------d 869 (1097)
....|+|.|||+ ++++-..|.|++++.. +..... + .........++++|+ ++.+.++-.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 467999999999 6655558999999853 332111 1 112345789999993 3444444332 2
Q ss_pred CcEEEEEcccc-------eEE-EEec-----ccccCeEEEEEecCCCEEEEEeCC-------------CcEEEEEcCCCc
Q 001336 870 SSIQIYNVRVD-------EVK-TKLK-----GHQKRITGLAFSNTLNVLVSSGAD-------------SQLCVWSTDGWE 923 (1097)
Q Consensus 870 g~v~vwd~~~~-------~~~-~~l~-----~h~~~V~~l~~s~dg~~l~s~~~D-------------g~i~iwd~~~~~ 923 (1097)
..|..|++..+ +.+ ..+. .|. -..|+|.|||.+.++.+.. |.|.-++.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666666432 111 1121 132 3579999999766665442 346555654320
Q ss_pred cc----------ceeeEeecCCCCCCccCCeEEEEcC-CCcEEEEE--eCCeEEEEeCCCccee----------------
Q 001336 924 KQ----------ASKFLTIPNGRTASALADTRVQFHL-DQTHLLAV--HETQIAIYEAPKLECL---------------- 974 (1097)
Q Consensus 924 ~~----------~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~l~~~--~d~~v~vwd~~~~~~~---------------- 974 (1097)
.. ...... .++ .....++|+| +|++.++- .++.=.|.-+..+..-
T Consensus 176 p~~npf~~~~~~~~~i~a--~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWS--YGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp CTTCTTTTSTTSCTTEEE--ECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCcCCCCCCccEEE--EcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 00 000111 111 2357899999 66655552 2222233322222110
Q ss_pred -------------eeeeccCCCCCEEEEEEec-------CCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCc
Q 001336 975 -------------KQFVPREASGPITHATYSC-------DSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLR 1034 (1097)
Q Consensus 975 -------------~~~~~~~h~~~v~~v~~s~-------dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~ 1034 (1097)
..+.. .+...+..++|.. +|.++++.-..+.|...+++.++...... ++. +...+
T Consensus 250 ~~~~~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~-~~~~r 324 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT-DRGQR 324 (353)
T ss_dssp TTCCBSSCTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG-GGCCC
T ss_pred CcccCCCCCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc-CCCCc
Confidence 00001 1234677888864 57777776677888888877654332211 110 11123
Q ss_pred eeeEEEEEcCCCCCEEEEEe-cCCcEEEEec
Q 001336 1035 VYPLVIAGNPTDPNQFALGL-TDGGVYIIEP 1064 (1097)
Q Consensus 1035 v~~l~i~~~p~~~~~l~s~~-~Dg~v~~W~~ 1064 (1097)
+..+++.| ||.++++.. .+| +||.+
T Consensus 325 --p~~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 325 --IRDVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp --EEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred --eeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 34557788 677776544 344 45554
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.01 E-value=0.089 Score=55.95 Aligned_cols=232 Identities=11% Similarity=0.084 Sum_probs=118.8
Q ss_pred CCEEEEEe-C----CeEEEEEcCCCceeEEeCCCCCC-eEEEEEeCCCCCEEEEEECCC-----cEEEEEcccceEEE--
Q 001336 818 DSYVMSAS-G----GKISLFNMMTFKTMTTFMPPPPA-ATFLAFHPQDNNIIAIGMEDS-----SIQIYNVRVDEVKT-- 884 (1097)
Q Consensus 818 g~~la~~s-d----g~i~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~~~~~la~g~~dg-----~v~vwd~~~~~~~~-- 884 (1097)
+.+++.|+ + ..+..||..+.+-...-...... -.+++.. ++++++.|+.++ .+.+||..+.+-..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 34455554 2 35888998776532221111111 1222222 567888887553 58899988765322
Q ss_pred EecccccCeEEEEEecCCCEEEEEeCCC-----cEEEEEcCCCcccceeeEee-cCCCCCCccCCeEEEEcCCCcEEEE-
Q 001336 885 KLKGHQKRITGLAFSNTLNVLVSSGADS-----QLCVWSTDGWEKQASKFLTI-PNGRTASALADTRVQFHLDQTHLLA- 957 (1097)
Q Consensus 885 ~l~~h~~~V~~l~~s~dg~~l~s~~~Dg-----~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~l~~s~dg~~l~~- 957 (1097)
.+......-..+ .-++..++.||.++ .+.+||+.+.+-. .+.. +... .-.+++. -++++++.
T Consensus 94 ~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~---~~~~~p~~r-----~~~~~~~-~~~~iyv~G 162 (302)
T 2xn4_A 94 NMRDRRSTLGAA--VLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWF---HVAPMNTRR-----SSVGVGV-VGGLLYAVG 162 (302)
T ss_dssp CCSSCCBSCEEE--EETTEEEEEEEECSSCEEEEEEEEETTTTEEE---EECCCSSCC-----BSCEEEE-ETTEEEEEC
T ss_pred CCCccccceEEE--EECCEEEEEcCCCCCccCceEEEEeCCCCeEe---ecCCCCCcc-----cCceEEE-ECCEEEEEe
Confidence 222111111222 23677788887664 4778888775422 2211 1111 1122222 25555555
Q ss_pred Ee-------CCeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecC-----CeEEEEeCCCCceeeeeCCCC
Q 001336 958 VH-------ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEE-----GSVGVLTASTLRLRCRINPTA 1025 (1097)
Q Consensus 958 ~~-------d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~D-----g~v~vwd~~~~~~~~~~~~~~ 1025 (1097)
+. -..+.+||..+.+-...-........-.. ..-++++++.|+.+ +.+.+||..+.+.... .
T Consensus 163 G~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~--- 236 (302)
T 2xn4_A 163 GYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGV--GVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV-A--- 236 (302)
T ss_dssp CEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEE--EEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEE-C---
T ss_pred CCCCCCCccccEEEEEeCCCCcEEECCCCccccccccE--EEECCEEEEECCCCCCcccceEEEEeCCCCCEeeC-C---
Confidence 32 24588999987653322111111111112 22377888888765 4688999988765432 2
Q ss_pred cCCCCCCCceeeEEEEEcCCCCCEEEEEecCC-----cEEEEecCCCCcccCCCCC
Q 001336 1026 YLPTNPSLRVYPLVIAGNPTDPNQFALGLTDG-----GVYIIEPLEAEGRWGTSPP 1076 (1097)
Q Consensus 1026 ~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg-----~v~~W~~~~~~~~~~~~~~ 1076 (1097)
.++...... .+++. ++.+++.|+.++ .+.+||+.+. +|...|+
T Consensus 237 ~~~~~r~~~--~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~~ 284 (302)
T 2xn4_A 237 DMNMCRRNA--GVCAV----NGLLYVVGGDDGSCNLASVEYYNPTTD--KWTVVSS 284 (302)
T ss_dssp CCSSCCBSC--EEEEE----TTEEEEECCBCSSSBCCCEEEEETTTT--EEEECSS
T ss_pred CCCCccccC--eEEEE----CCEEEEECCcCCCcccccEEEEcCCCC--eEEECCc
Confidence 122221111 12221 567888888764 4888888765 4987763
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.98 E-value=0.042 Score=58.51 Aligned_cols=233 Identities=11% Similarity=0.031 Sum_probs=117.4
Q ss_pred CCCEEEEEE-CC-----CEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCC-----CcEEEEECCCC
Q 001336 392 DGTLFGVAY-SK-----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RVIKVWDAVTG 460 (1097)
Q Consensus 392 d~~~las~~-~d-----g~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d-----~~i~iwd~~~~ 460 (1097)
++..++.|+ .+ ..+.+||..+++-. ....+........++. .++. +++.|+.+ ..+.+||+.++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~--~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWS-FLPSITRKRRYVASVS--LHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEE-ECCCCSSCCBSCEEEE--ETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEE-eCCCCChhhccccEEE--ECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 455666666 33 35788998876522 2212221111122222 2455 66777654 46899999887
Q ss_pred c---eeEE--eecCCcCeEEEeecccCCccEEEEEcCC-----CeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEE
Q 001336 461 T---KQYI--FEGHESPVYSICPHHKENIQFIFSTATD-----GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF 530 (1097)
Q Consensus 461 ~---~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 530 (1097)
+ .... +......-..+.+ ++.+++.|+.+ ..+.+||..+..-...-..........+..-+++.++
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 164 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYC 164 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEE
Confidence 6 3332 1111111122222 34667777644 3577888776543322222111111111223677777
Q ss_pred EeeeCCCC-CceEEEEeCCCCeeeEEecCCCC-cceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEecCC
Q 001336 531 SCGTNKEG-ESYLVEWNESEGAVKRTYHGLGK-RSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLASIDADG 603 (1097)
Q Consensus 531 ~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~ 603 (1097)
.++.++.. ...+..||+.+.+-...-..... .....+.+ ++..++.|+.+ ..+.+||..+.+-...-....
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 242 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT 242 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC
Confidence 77654321 34588999887754333211111 01122222 55667777643 468999998876544322221
Q ss_pred CCCCcceEEEcCCCCEEEEEECC-----CcEEEEEcCCC
Q 001336 604 GLQASPCIRFNKEGILLAVSTND-----NGIKILANADG 637 (1097)
Q Consensus 604 ~~~~v~~v~~s~~~~~l~s~~~d-----g~i~iw~~~~~ 637 (1097)
......+..-++.+++.|+.+ ..+.+||..+.
T Consensus 243 --~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 243 --PRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp --CCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred --cccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 111222222356777777655 35777887765
No 317
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.97 E-value=0.042 Score=58.52 Aligned_cols=230 Identities=12% Similarity=0.070 Sum_probs=114.8
Q ss_pred CCEEEEEECC----CEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCC-----CcEEEEECCCCcee
Q 001336 393 GTLFGVAYSK----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RVIKVWDAVTGTKQ 463 (1097)
Q Consensus 393 ~~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d-----~~i~iwd~~~~~~~ 463 (1097)
+..++.|+.+ ..+..||..+++- .....+......-..+.. ++. +++.|+.+ ..+.+||..+.+..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERW-HQVAELPSRRCRAGMVYM--AGL--VFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTE--EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcE-eEcccCCcccccceEEEE--CCE--EEEEeCcCCCccccceEEECCCCCcee
Confidence 4455556543 3578888887652 222122211111122222 455 66677654 36889998877644
Q ss_pred EEee--cCCcCeEEEeecccCCccEEEEEcCCC-----eEEEEEcCCCCceeeecCCCCc-eEEEEEccCCCEEEEeeeC
Q 001336 464 YIFE--GHESPVYSICPHHKENIQFIFSTATDG-----KIKAWLYDNLGSRVDYDAPGHS-STMMAYSADGARLFSCGTN 535 (1097)
Q Consensus 464 ~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~~ 535 (1097)
..-. .....-..+.+ ++.+++.|+.++ .+.+||+.+..-...-...... -.+++. -+++.++.++.+
T Consensus 91 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 165 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYD 165 (302)
T ss_dssp EECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEE
T ss_pred eCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCC
Confidence 3221 11111122222 336677776553 4667777654432221111111 112222 366777777654
Q ss_pred CCC---CceEEEEeCCCCeeeEE--ecCCCCcceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEecCCCC
Q 001336 536 KEG---ESYLVEWNESEGAVKRT--YHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLASIDADGGL 605 (1097)
Q Consensus 536 ~~~---~~~i~~wd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~ 605 (1097)
... ...+..||+.+.+-... +..... ....+.+ ++..++.|+.+ ..+.+||..+.+-...-....
T Consensus 166 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~-- 240 (302)
T 2xn4_A 166 VASRQCLSTVECYNATTNEWTYIAEMSTRRS-GAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM-- 240 (302)
T ss_dssp TTTTEECCCEEEEETTTTEEEEECCCSSCCB-SCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSS--
T ss_pred CCCCccccEEEEEeCCCCcEEECCCCccccc-cccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCC--
Confidence 432 34588999987754332 221111 1222222 56677777653 368999998875443322211
Q ss_pred CCcceEEEcCCCCEEEEEECCC-----cEEEEEcCCC
Q 001336 606 QASPCIRFNKEGILLAVSTNDN-----GIKILANADG 637 (1097)
Q Consensus 606 ~~v~~v~~s~~~~~l~s~~~dg-----~i~iw~~~~~ 637 (1097)
......+..-++.+++.|+.++ .+.+||..+.
T Consensus 241 ~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 241 CRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred ccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 1111122223567777777553 4788888765
No 318
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.95 E-value=0.06 Score=57.42 Aligned_cols=232 Identities=6% Similarity=-0.011 Sum_probs=117.3
Q ss_pred CEEEEEECC--CEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCC----CcEEEEECCCCceeEEee
Q 001336 394 TLFGVAYSK--HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED----RVIKVWDAVTGTKQYIFE 467 (1097)
Q Consensus 394 ~~las~~~d--g~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~ 467 (1097)
.+++.|+.+ ..+.+||..+++-. ....+......-.++. -++. +++.|+.+ ..+.++|+.+++....-.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWT-DIRCPFEKRRDAACVF--WDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEE-ECCCCSCCCBSCEEEE--ETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEe-cCCCCCcccceeEEEE--ECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 345556543 46888998886532 2212221111222222 2455 66777654 678899998876543221
Q ss_pred cC--CcCeEEEeecccCCccEEEEEcCC------CeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCC-
Q 001336 468 GH--ESPVYSICPHHKENIQFIFSTATD------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG- 538 (1097)
Q Consensus 468 ~h--~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~- 538 (1097)
.. ...-..+.+ ++.+++.|+.+ ..+.+||..+..-...-..........+..-+++.++.++.+...
T Consensus 88 ~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 88 PPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNV 163 (306)
T ss_dssp CSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTT
T ss_pred CCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCC
Confidence 11 111122222 33677777765 457888877654322211111111111122367777777654432
Q ss_pred ----CceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEecCCCCCCcc
Q 001336 539 ----ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLASIDADGGLQASP 609 (1097)
Q Consensus 539 ----~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~ 609 (1097)
...+.+||+.+.+-...-.......-..++.. ++..++.|+.+ ..+.+||..+.+-...-..........
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 242 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVK 242 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCE
T ss_pred cccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcccee
Confidence 34588999988754332211111011122222 55666666643 468899998875433222111111122
Q ss_pred eEEEcCCCCEEEEEECC-----CcEEEEEcCCC
Q 001336 610 CIRFNKEGILLAVSTND-----NGIKILANADG 637 (1097)
Q Consensus 610 ~v~~s~~~~~l~s~~~d-----g~i~iw~~~~~ 637 (1097)
++.+ ++.+++.|+.+ ..+.+||..+.
T Consensus 243 ~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 243 CAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred EEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 2333 56777778754 46788888775
No 319
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.95 E-value=0.61 Score=50.44 Aligned_cols=261 Identities=8% Similarity=0.086 Sum_probs=153.2
Q ss_pred CeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeee
Q 001336 342 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLE 421 (1097)
Q Consensus 342 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~ 421 (1097)
..|.|-|+.++....++.+ .--+.-.+|..+.||.-. ..++.|+|+++.+.++..
T Consensus 48 ~~vvIiDl~~~~~~~rrpi----------------------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~-- 102 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPI----------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH-- 102 (494)
T ss_dssp CEEEEEETTSTTSCEEEEC----------------------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEE--
T ss_pred CeEEEEECCCCCcceeccc----------------------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcce--
Confidence 3788888887765543322 112344567777666654 678999999998766532
Q ss_pred eecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCC-CceeEEeecCCc--CeEEEeecccCCccEEEEEc-------
Q 001336 422 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT-GTKQYIFEGHES--PVYSICPHHKENIQFIFSTA------- 491 (1097)
Q Consensus 422 l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~------- 491 (1097)
.- ...|..=.|-.+.. |+-.+ +..|+-|++.. ..+.+.|..|.. ...-+.+..+++.++++..+
T Consensus 103 -~~-~e~VvfWkWis~~~---l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~ 176 (494)
T 1bpo_A 103 -TM-TDDVTFWKWISLNT---VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR 176 (494)
T ss_dssp -EC-SSCCCEEEEEETTE---EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTE
T ss_pred -ec-CCCceEEEecCCCe---EEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCc
Confidence 22 34566667765554 32222 45899999974 456677776642 22333444466667665433
Q ss_pred CCCeEEEEEcCCCCceeeecCCCCceEEEEEccC---CCEEEEeeeCCCCCceEEEEeCCCC---e------eeEEe-c-
Q 001336 492 TDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD---GARLFSCGTNKEGESYLVEWNESEG---A------VKRTY-H- 557 (1097)
Q Consensus 492 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~~~~~~~~i~~wd~~~~---~------~~~~~-~- 557 (1097)
-.|.+.+|..+... ...+++|......+.+..+ ...++.+.... ....+++.++... . .+..+ .
T Consensus 177 v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~-~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp 254 (494)
T 1bpo_A 177 VVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ-AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP 254 (494)
T ss_dssp EEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECST-TCCEEEEEECSCCCTTCCCCCCEEEECCCCT
T ss_pred ccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecC-CCcEEEEEEcCCCccCCCCccceeeeeeCCc
Confidence 23678888876433 3334444332222222111 11333333322 2357888887532 1 11111 1
Q ss_pred CCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001336 558 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 558 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw~~~~~ 637 (1097)
....+...++..++.-..++.-+.-|.|++||++++.++..-... ...|...+-+....=++.....|.|.-..++..
T Consensus 255 e~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs--~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 255 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred ccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc--CCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 111224456788888889999999999999999999999887754 445655555555555566667777766655543
No 320
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.90 E-value=0.092 Score=56.54 Aligned_cols=185 Identities=9% Similarity=0.077 Sum_probs=110.6
Q ss_pred CeeEEEEccCCCEEEEE-------------eCCeEEEEEcCC--Cce-eEEeCC-----CCCCeEEEEEeCC-CCC-EEE
Q 001336 808 AVPCFALSKNDSYVMSA-------------SGGKISLFNMMT--FKT-MTTFMP-----PPPAATFLAFHPQ-DNN-IIA 864 (1097)
Q Consensus 808 ~v~~l~~s~dg~~la~~-------------sdg~i~iwd~~~--~~~-~~~~~~-----~~~~i~~l~~sp~-~~~-~la 864 (1097)
....+++.|+|..++++ .+|.|.++|..+ .+. ...+.+ ..-....+.+.++ ++. +|.
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34567788888777776 378899999873 221 112322 1235677777552 232 444
Q ss_pred EEE-C--CCcEEEEEcccc----eEEEEeccc-ccCeEEEEEecCCCEEEEEeC---C------------CcEEEEEcCC
Q 001336 865 IGM-E--DSSIQIYNVRVD----EVKTKLKGH-QKRITGLAFSNTLNVLVSSGA---D------------SQLCVWSTDG 921 (1097)
Q Consensus 865 ~g~-~--dg~v~vwd~~~~----~~~~~l~~h-~~~V~~l~~s~dg~~l~s~~~---D------------g~i~iwd~~~ 921 (1097)
++. . +.+|.+|++..+ ..+..+.+. -...+.+.+.++|.+.++... | ..=.+|.+..
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 443 3 457888887653 233444432 245789999999998887651 1 1223444433
Q ss_pred CcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE--eCCeEEEEeCCC-ccee--eeeeccCCCCCEEEEEEec-CC
Q 001336 922 WEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQIAIYEAPK-LECL--KQFVPREASGPITHATYSC-DS 995 (1097)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~--~d~~v~vwd~~~-~~~~--~~~~~~~h~~~v~~v~~s~-dg 995 (1097)
++. .. +..+- .....++||||++.|.++ ..+.|..|+++. ++.. ..+. ..+....+++.+ +|
T Consensus 211 ~~~---~~--~~~~l----~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G 278 (355)
T 3sre_A 211 NDV---RV--VAEGF----DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTG 278 (355)
T ss_dssp TCC---EE--EEEEE----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTC
T ss_pred CeE---EE--eecCC----cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCC
Confidence 321 11 11111 225789999999988885 468999999863 3221 2222 246778899999 59
Q ss_pred CEEEEEecC
Q 001336 996 QSIYVAFEE 1004 (1097)
Q Consensus 996 ~~l~s~s~D 1004 (1097)
.+.+++..+
T Consensus 279 ~lwva~~~~ 287 (355)
T 3sre_A 279 DLWVGCHPN 287 (355)
T ss_dssp CEEEEEESC
T ss_pred cEEEEecCC
Confidence 988766544
No 321
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.89 E-value=0.028 Score=60.71 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=104.4
Q ss_pred EEEEccCCCEEEEEeCCeEEEEEcCCCceeEEeCCC----CCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccce-----
Q 001336 811 CFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPP----PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE----- 881 (1097)
Q Consensus 811 ~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~----- 881 (1097)
-...+.+|..++.+.++.||.-++......+.+... ...|..+..+| +|++||..+ +..|.|-.+..+.
T Consensus 25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence 345668899999999999999998755445555433 23688899999 999999886 5679998887321
Q ss_pred -------EEEEecc------cccCeEEEEEecC---CCEEEEEeCCCcEEEEEcCCCcccceeeEeecC---CCCCCccC
Q 001336 882 -------VKTKLKG------HQKRITGLAFSNT---LNVLVSSGADSQLCVWSTDGWEKQASKFLTIPN---GRTASALA 942 (1097)
Q Consensus 882 -------~~~~l~~------h~~~V~~l~~s~d---g~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~ 942 (1097)
..+.+.- ...+|..+.|+|- +..|++-..|++|++||+........ .+.... +.......
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~e 181 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVND 181 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCC
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccce
Confidence 1122221 2567999999985 46899999999999999997443222 222111 11111156
Q ss_pred CeEEEEcCCCcEEEE-E--eCCeEEE
Q 001336 943 DTRVQFHLDQTHLLA-V--HETQIAI 965 (1097)
Q Consensus 943 v~~l~~s~dg~~l~~-~--~d~~v~v 965 (1097)
+.+++|..++--|.+ . .+|.|+-
T Consensus 182 v~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 182 ITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred EEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 889999998876666 3 4567664
No 322
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.84 E-value=0.19 Score=53.66 Aligned_cols=230 Identities=12% Similarity=0.075 Sum_probs=117.0
Q ss_pred eCCeEEEEEcCCCceeE-EeCCCCCCeEEEEEeCCCCCEEEEEEC-----C------CcEEEEEcccceEEE--Eecccc
Q 001336 825 SGGKISLFNMMTFKTMT-TFMPPPPAATFLAFHPQDNNIIAIGME-----D------SSIQIYNVRVDEVKT--KLKGHQ 890 (1097)
Q Consensus 825 sdg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~sp~~~~~la~g~~-----d------g~v~vwd~~~~~~~~--~l~~h~ 890 (1097)
+...+.+||..+.+-.. .+..+.......+... ++++++.|+. . ..+.+||..+.+-.. .+....
T Consensus 11 GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 89 (315)
T 4asc_A 11 SEEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR 89 (315)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE
T ss_pred cCCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch
Confidence 34678999998766432 2221223333333344 7788888884 1 127788887765322 111111
Q ss_pred cCeEEEEEecCCCEEEEEeCC--------CcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEE-e-C
Q 001336 891 KRITGLAFSNTLNVLVSSGAD--------SQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-H-E 960 (1097)
Q Consensus 891 ~~V~~l~~s~dg~~l~s~~~D--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~-d 960 (1097)
..-..+. -+++.++.||.+ ..+.+||+.+.+-.... ..+.... -.+++. .++++++.+ . +
T Consensus 90 ~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~r~-----~~~~~~-~~~~iyv~GG~~~ 159 (315)
T 4asc_A 90 CLFGLGE--ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD--PLPYVVY-----GHTVLS-HMDLVYVIGGKGS 159 (315)
T ss_dssp ESCEEEE--ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC--CCSSCCB-----SCEEEE-ETTEEEEECCBCT
T ss_pred hceeEEE--ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC--CCCCccc-----ceeEEE-ECCEEEEEeCCCC
Confidence 1111122 266777777742 35888998875422111 1111111 122222 455555553 3 2
Q ss_pred -----CeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCC-----eEEEEeCCCCceeeeeCCCCcCCCC
Q 001336 961 -----TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEG-----SVGVLTASTLRLRCRINPTAYLPTN 1030 (1097)
Q Consensus 961 -----~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg-----~v~vwd~~~~~~~~~~~~~~~~~~~ 1030 (1097)
..+.+||..+.+-...-.. . .......+..-++++++.|+.++ .+.+||..+.+.... . .+|..
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~-p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~---~~p~~ 233 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPM-Q-TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF-E---AFPQE 233 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCC-S-SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEE-C---CCSSC
T ss_pred CCcccceEEEEeCCCCeEEECCCC-C-CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEEC-C---CCCCc
Confidence 4699999987643221111 0 11111112233778888888654 588899988754432 2 12222
Q ss_pred CCCceeeEEEEEcCCCCCEEEEEecCC--------------cEEEEecCCCCcccCCCCCCCC
Q 001336 1031 PSLRVYPLVIAGNPTDPNQFALGLTDG--------------GVYIIEPLEAEGRWGTSPPNEN 1079 (1097)
Q Consensus 1031 h~~~v~~l~i~~~p~~~~~l~s~~~Dg--------------~v~~W~~~~~~~~~~~~~~~~~ 1079 (1097)
.... .++ .+ ++.+++.|+.++ .+.+||+.. .+|...+|...
T Consensus 234 r~~~--~~~-~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~--~~W~~~~~~~r 288 (315)
T 4asc_A 234 RSSL--SLV-SL---VGTLYAIGGFATLETESGELVPTELNDIWRYNEEE--KKWEGVLREIA 288 (315)
T ss_dssp CBSC--EEE-EE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTT--TEEEEEESCSS
T ss_pred ccce--eEE-EE---CCEEEEECCccccCcCCccccccccCcEEEecCCC--ChhhhhccCCc
Confidence 1111 122 21 567888888743 356677665 45988765554
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.75 E-value=0.55 Score=50.93 Aligned_cols=235 Identities=9% Similarity=-0.012 Sum_probs=119.0
Q ss_pred CCeEEEEEccCCCEEEEEECCCEEEEEEccCCeeeeeeeee----ecccCcEEEEEEecC---CCcEEEEEEeC------
Q 001336 382 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEI----EAHVGSVNDLAFSYP---NKQLSVVTCGE------ 448 (1097)
Q Consensus 382 ~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l----~~h~~~V~~l~~s~d---~~~~~l~s~s~------ 448 (1097)
.....|+|.|||+.|.++...|.|++++.. ++.......+ .........++|+|+ +.. +.++-+.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR-IWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE-EEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCE-EEEEEeCCCCCCC
Confidence 356899999999944556678999998853 3321111111 122346789999996 553 3333222
Q ss_pred -CCcEEEEECCCC--c--eeEE-eec------CCcCeEEEeecccCCccEEEEEcC-------------CCeEEEEEcCC
Q 001336 449 -DRVIKVWDAVTG--T--KQYI-FEG------HESPVYSICPHHKENIQFIFSTAT-------------DGKIKAWLYDN 503 (1097)
Q Consensus 449 -d~~i~iwd~~~~--~--~~~~-~~~------h~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~ 503 (1097)
...|..|++..+ + .... +.. ....-..++| .+||.+.++.+. .|.|.-++.+.
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~--~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG 173 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVF--DGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG 173 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEE--CSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEE--CCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence 235666666533 1 1111 111 0111245777 556666665543 24566666543
Q ss_pred CC------------ceeeecCCCCceEEEEEcc-CCCEEEEeeeCCCCCceEEEEe--------CCCC------------
Q 001336 504 LG------------SRVDYDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWN--------ESEG------------ 550 (1097)
Q Consensus 504 ~~------------~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd--------~~~~------------ 550 (1097)
.- ....+.........++|+| +|++.++- ...++...|.+.. ...+
T Consensus 174 ~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d-~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~ 252 (353)
T 2g8s_A 174 EIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNE-HGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEA 252 (353)
T ss_dssp CCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEE-ECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTC
T ss_pred CCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEe-cCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcc
Confidence 20 1111111123567899999 55544443 2211111222211 0000
Q ss_pred ---------eeeEEecCCCCcceEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCceEEEEecC-CCCCCcceEEE
Q 001336 551 ---------AVKRTYHGLGKRSVGVVQFDT-------TKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-GGLQASPCIRF 613 (1097)
Q Consensus 551 ---------~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~ 613 (1097)
..+..+..+ . ....+.|.. ++.++++.-..+.|...+++.++.......- .....+..+++
T Consensus 253 ~~~~~~~~~~P~~~~~~~-~-ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~ 330 (353)
T 2g8s_A 253 KGEIVAGTEQPVFYWKDS-P-AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRT 330 (353)
T ss_dssp CBSSCTTSCCCSEEESSC-C-CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEE
T ss_pred cCCCCCCccCCeEEeCCC-c-CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEE
Confidence 011112211 1 355566653 4566666557788888888766544332211 11236789999
Q ss_pred cCCCCEEEEE
Q 001336 614 NKEGILLAVS 623 (1097)
Q Consensus 614 s~~~~~l~s~ 623 (1097)
.|||.+.++.
T Consensus 331 ~pdG~lyv~t 340 (353)
T 2g8s_A 331 GPDGYLYVLT 340 (353)
T ss_dssp CTTSCEEEEE
T ss_pred CCCCcEEEEE
Confidence 9999865543
No 324
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.72 E-value=0.81 Score=48.94 Aligned_cols=231 Identities=10% Similarity=0.048 Sum_probs=122.2
Q ss_pred CCeeEEEEccCCCEEEEEe-CCeEEEEEcCCCcee--EEeC----CCCCCeEEEEEeCC---CCCEEEEEE--CCCcEEE
Q 001336 807 DAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--TTFM----PPPPAATFLAFHPQ---DNNIIAIGM--EDSSIQI 874 (1097)
Q Consensus 807 ~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~--~~~~----~~~~~i~~l~~sp~---~~~~la~g~--~dg~v~v 874 (1097)
...+.|+|.|||+++++-. .|.|++++..+++.. ..+. ........|+++|+ ++.+.++-+ .++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 4568999999999888887 899999987655532 2221 12456889999983 244444322 3445555
Q ss_pred EEcccc----------eEE-EEec---ccccCeEEEEEecCCCEEEEEeC-------------CCcEEEEEcCCCccc--
Q 001336 875 YNVRVD----------EVK-TKLK---GHQKRITGLAFSNTLNVLVSSGA-------------DSQLCVWSTDGWEKQ-- 925 (1097)
Q Consensus 875 wd~~~~----------~~~-~~l~---~h~~~V~~l~~s~dg~~l~s~~~-------------Dg~i~iwd~~~~~~~-- 925 (1097)
|.+..+ +.+ ..+. .|. ...|+|.|||.+.++.+. -|.|.-.+.+..-..
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 655431 222 2222 243 357999999988888653 244444444321000
Q ss_pred ---ceeeEeecCCCCCCccCCeEEEEcCCCcEEEE--EeCCeEEEEeCCCcce------------------eeeeeccCC
Q 001336 926 ---ASKFLTIPNGRTASALADTRVQFHLDQTHLLA--VHETQIAIYEAPKLEC------------------LKQFVPREA 982 (1097)
Q Consensus 926 ---~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~--~~d~~v~vwd~~~~~~------------------~~~~~~~~h 982 (1097)
.... ...++ .....++|+|+|.+.++ +.++.=.|.-+..+.. +..+. .+
T Consensus 190 Pf~~~~i--~a~G~----RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~--~~ 261 (347)
T 3das_A 190 PFPGSPV--YSYGH----RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS--TD 261 (347)
T ss_dssp SSTTCCE--EEBCC----SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC--TT
T ss_pred CCCCCeE--EeeCC----CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecC--CC
Confidence 0001 11122 23678999999887766 3333233333332221 11111 11
Q ss_pred CCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEe
Q 001336 983 SGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGL 1054 (1097)
Q Consensus 983 ~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~ 1054 (1097)
......++|. +|.+++..-..+.|....+...... .....+..+..+++..+ +..| ||.++++.+
T Consensus 262 ~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~---~~~e~~l~~~~gR~~dv--~~~p-DG~lyv~td 326 (347)
T 3das_A 262 EASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAA---ADPQAFLEGEYGRLRTV--APAG-GDKLWLVTS 326 (347)
T ss_dssp TCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEES---SCCEEESTTTSSCEEEE--EEEE-TTEEEEEEC
T ss_pred CCCCcceEEE-cCceeeccccCCEEEEEEecCCcee---cceEEeecCCCCCccEE--EECC-CCcEEEEEc
Confidence 2466778887 4666665555666666666544321 10011111223455555 4446 566655544
No 325
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.65 E-value=0.97 Score=48.52 Aligned_cols=207 Identities=12% Similarity=0.083 Sum_probs=115.3
Q ss_pred CeEEEEEccCCCEEEEE------------ECCCEEEEEEccCCe-eeeeeeeeec-----ccCcEEEEEEec--CCCcEE
Q 001336 383 SVNRVMWSPDGTLFGVA------------YSKHIVHLYTYHGGD-ELRNHLEIEA-----HVGSVNDLAFSY--PNKQLS 442 (1097)
Q Consensus 383 ~V~~v~~spd~~~las~------------~~dg~i~iwd~~~~~-~~~~~~~l~~-----h~~~V~~l~~s~--d~~~~~ 442 (1097)
..-.++..|+|..++++ ..+|.|.++|..+.. ..... .+.+ ..-....+.+.+ ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 33456677887665555 268999999997421 12222 2333 234667777766 454323
Q ss_pred EEEEeC--CCcEEEEECCCCc----eeEEeecC-CcCeEEEeecccCCccEEEEEcC-----------------CCeEEE
Q 001336 443 VVTCGE--DRVIKVWDAVTGT----KQYIFEGH-ESPVYSICPHHKENIQFIFSTAT-----------------DGKIKA 498 (1097)
Q Consensus 443 l~s~s~--d~~i~iwd~~~~~----~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~i 498 (1097)
+++-.. +.+|.+|++..+. .+.++.+. -...+++++ .++|.+.++... .|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v--~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVA--VGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEE--EETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEE--eCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 344333 4678887766432 12334332 234677877 455666666541 234444
Q ss_pred EEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCC-Cee--eEEecCCCCcceEEEEEcC-CCC
Q 001336 499 WLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE-GAV--KRTYHGLGKRSVGVVQFDT-TKN 574 (1097)
Q Consensus 499 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~-~~~ 574 (1097)
++ ..+... ....-...+.++|+||++.|+.+.. ....|..|++.. +.. .+.+.. ......+++.+ +|+
T Consensus 208 ~d--~~~~~~-~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~~--~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 208 YS--PNDVRV-VAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLSF--DTLVDNISVDPVTGD 279 (355)
T ss_dssp EC--TTCCEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEEC--SSEEEEEEECTTTCC
T ss_pred EE--CCeEEE-eecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEeC--CCCCceEEEeCCCCc
Confidence 44 332222 2222235688999999998888753 245799998753 322 233421 23567789999 598
Q ss_pred EEEEEeCC-CcEEEEECC--CCceEEEEe
Q 001336 575 RFLAAGDE-FMIKFWDMD--NVNLLASID 600 (1097)
Q Consensus 575 ~l~~~~~d-g~i~iwd~~--~~~~~~~~~ 600 (1097)
+.+++..+ +.|..|+.+ .+..+..+.
T Consensus 280 lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 280 LWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 88877633 455555554 244444444
No 326
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.54 E-value=0.14 Score=54.67 Aligned_cols=237 Identities=11% Similarity=0.030 Sum_probs=119.8
Q ss_pred cCCCEEEEEe-C----CeEEEEEcCCCceeEEeCCCCCC-eEEEEEeCCCCCEEEEEEC----C-----CcEEEEEcccc
Q 001336 816 KNDSYVMSAS-G----GKISLFNMMTFKTMTTFMPPPPA-ATFLAFHPQDNNIIAIGME----D-----SSIQIYNVRVD 880 (1097)
Q Consensus 816 ~dg~~la~~s-d----g~i~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~~~~~la~g~~----d-----g~v~vwd~~~~ 880 (1097)
-++.+++.|+ + ..+.+||..+.+-...-...... -.+++.. ++++++.|+. + ..+.+||+.+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 3455666554 2 45889998776532221111111 1122332 5677777775 2 36889998876
Q ss_pred eEEE--EecccccCeEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCc
Q 001336 881 EVKT--KLKGHQKRITGLAFSNTLNVLVSSGAD-----SQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQT 953 (1097)
Q Consensus 881 ~~~~--~l~~h~~~V~~l~~s~dg~~l~s~~~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 953 (1097)
+-.. .+......-..+. -++++++.||.+ ..+.+||+.+.+-.... ..+.... .-..+.+ +++
T Consensus 101 ~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~r~----~~~~~~~--~~~ 170 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA--PMLTRRI----GVGVAVL--NRL 170 (308)
T ss_dssp EEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECC--CCSSCCB----SCEEEEE--TTE
T ss_pred eEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECC--CCCcccc----ceEEEEE--CCE
Confidence 5322 1211111112222 267777777644 35888898875422211 1111111 1122222 555
Q ss_pred EEEE-EeC-----CeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecC-----CeEEEEeCCCCceeeeeC
Q 001336 954 HLLA-VHE-----TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEE-----GSVGVLTASTLRLRCRIN 1022 (1097)
Q Consensus 954 ~l~~-~~d-----~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~D-----g~v~vwd~~~~~~~~~~~ 1022 (1097)
+++. +.+ ..+.+||..+.+-...-........-..+. -++++++.|+.+ ..+.+||+.+.+... +.
T Consensus 171 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~ 247 (308)
T 1zgk_A 171 LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTF-VA 247 (308)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE-CC
T ss_pred EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEE-CC
Confidence 5555 322 468999988764322211111111112222 277888888765 568999998875442 22
Q ss_pred CCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecC-----CcEEEEecCCCCcccCCCCCCC
Q 001336 1023 PTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTD-----GGVYIIEPLEAEGRWGTSPPNE 1078 (1097)
Q Consensus 1023 ~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~D-----g~v~~W~~~~~~~~~~~~~~~~ 1078 (1097)
.+|..... ..+++. ++.+++.|+.+ ..+.+||+.+ .+|...++..
T Consensus 248 ---~~p~~r~~--~~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~p 297 (308)
T 1zgk_A 248 ---PMKHRRSA--LGITVH----QGRIYVLGGYDGHTFLDSVECYDPDT--DTWSEVTRMT 297 (308)
T ss_dssp ---CCSSCCBS--CEEEEE----TTEEEEECCBCSSCBCCEEEEEETTT--TEEEEEEECS
T ss_pred ---CCCCCccc--eEEEEE----CCEEEEEcCcCCCcccceEEEEcCCC--CEEeecCCCC
Confidence 12222111 122222 56788888765 3477787765 4598765543
No 327
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.50 E-value=0.15 Score=54.60 Aligned_cols=227 Identities=10% Similarity=-0.000 Sum_probs=111.3
Q ss_pred EEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeC-----C------CcEEEEECCCCceeE
Q 001336 396 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-----D------RVIKVWDAVTGTKQY 464 (1097)
Q Consensus 396 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~-----d------~~i~iwd~~~~~~~~ 464 (1097)
++.|+ ..+.+||..+++-.. ..+..........+...++. +++.|+. . ..+.+||..+++...
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 81 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG 81 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence 44454 568999998876322 22322222223333344666 6666663 1 127788988876432
Q ss_pred EeecCCcCe--EEEeecccCCccEEEEEcCC--------CeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeee
Q 001336 465 IFEGHESPV--YSICPHHKENIQFIFSTATD--------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGT 534 (1097)
Q Consensus 465 ~~~~h~~~v--~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 534 (1097)
+..-..+- .+++. . ++.+++.|+.+ ..+.+||..+..-...-..........+..-+++.++.++.
T Consensus 82 -~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 82 -MPPLPSPRCLFGLGE--A-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp -CCCBSSCEESCEEEE--E-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred -CCCCCcchhceeEEE--E-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCC
Confidence 21111111 11222 1 33566667632 45788887764322211111111111122246667777765
Q ss_pred CC--CCCceEEEEeCCCCeeeEE--ecCCCCcceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceEEEEecCCCC
Q 001336 535 NK--EGESYLVEWNESEGAVKRT--YHGLGKRSVGVVQFDTTKNRFLAAGDEF-----MIKFWDMDNVNLLASIDADGGL 605 (1097)
Q Consensus 535 ~~--~~~~~i~~wd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~ 605 (1097)
+. .....+.+||+.+.+-... +..... ....+.+ ++..++.|+.++ .+.+||..+.+-...-.....
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~- 233 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPMQTARS-LFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE- 233 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCCSSCCB-SCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-
T ss_pred CCCCcccceEEEEeCCCCeEEECCCCCCchh-ceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-
Confidence 22 1234588999887643322 211111 1122222 566777777543 588899988754443222211
Q ss_pred CCcceEEEcCCCCEEEEEECCC--------------cEEEEEcCCC
Q 001336 606 QASPCIRFNKEGILLAVSTNDN--------------GIKILANADG 637 (1097)
Q Consensus 606 ~~v~~v~~s~~~~~l~s~~~dg--------------~i~iw~~~~~ 637 (1097)
.....+..-++.+++.|+.++ .+.+||..+.
T Consensus 234 -r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 234 -RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp -CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred -ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 111122222567777776532 3667777665
No 328
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.48 E-value=1.2 Score=47.59 Aligned_cols=99 Identities=10% Similarity=0.103 Sum_probs=59.5
Q ss_pred eeEEEEccCCCEEEEEe--CCeEEEEEcCCCc------------------eeEEeCCCCCCeEEEEEeCCCCCEEEEEEC
Q 001336 809 VPCFALSKNDSYVMSAS--GGKISLFNMMTFK------------------TMTTFMPPPPAATFLAFHPQDNNIIAIGME 868 (1097)
Q Consensus 809 v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~------------------~~~~~~~~~~~i~~l~~sp~~~~~la~g~~ 868 (1097)
...++|+|+|.+.++-. ++.-.|--+..+. .+..+..+......++|.. +.+++..-.
T Consensus 204 p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l~ 281 (347)
T 3das_A 204 VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGLR 281 (347)
T ss_dssp CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEEST
T ss_pred cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeecccc
Confidence 46799999988776653 3222222222211 1222322224567888874 566666666
Q ss_pred CCcEEEEEcccceE----EEEecccccCeEEEEEecCCCEEEEEe
Q 001336 869 DSSIQIYNVRVDEV----KTKLKGHQKRITGLAFSNTLNVLVSSG 909 (1097)
Q Consensus 869 dg~v~vwd~~~~~~----~~~l~~h~~~V~~l~~s~dg~~l~s~~ 909 (1097)
.+.|....+..+.. ...+.+..+++..|+..|||.++++.+
T Consensus 282 ~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 282 GERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 67777777765432 233445557899999999998777654
No 329
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.42 E-value=0.13 Score=54.77 Aligned_cols=231 Identities=7% Similarity=0.043 Sum_probs=115.4
Q ss_pred cCCCEEEEEECC----CEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeC----C-----CcEEEEEC
Q 001336 391 PDGTLFGVAYSK----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE----D-----RVIKVWDA 457 (1097)
Q Consensus 391 pd~~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~----d-----~~i~iwd~ 457 (1097)
-++..++.|+.+ ..+.+||..+++-.. ...+......-..+.. ++. +++.|+. + ..+.++|+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGLAGCVV--GGL--LYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEE--TTE--EEEECCEEEETTEEEECCCEEEEET
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccceEEEE--CCE--EEEECCCcCCCCCCeecceEEEECC
Confidence 366777777742 358899988765322 1112111111122222 454 5666665 2 46889998
Q ss_pred CCCceeEE--eecCCcCeEEEeecccCCccEEEEEcCC-----CeEEEEEcCCCCceeeecCCCC--ceEEEEEccCCCE
Q 001336 458 VTGTKQYI--FEGHESPVYSICPHHKENIQFIFSTATD-----GKIKAWLYDNLGSRVDYDAPGH--SSTMMAYSADGAR 528 (1097)
Q Consensus 458 ~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~ 528 (1097)
.+.+.... +......-..+.+ ++.+++.|+.+ ..+.+||..+..-...-..... .-..+.+ +++.
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 171 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLL 171 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred CCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEE
Confidence 87764332 1111111122222 33666766643 3577888765432222111111 1122222 6777
Q ss_pred EEEeeeCCCC-CceEEEEeCCCCeeeEE--ecCCCCcceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEe
Q 001336 529 LFSCGTNKEG-ESYLVEWNESEGAVKRT--YHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLASID 600 (1097)
Q Consensus 529 l~~~~~~~~~-~~~i~~wd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~ 600 (1097)
++.++.++.. ...+..||+.+.+-... +..... ....+.+ ++..++.|+.+ ..+.+||+.+.+-...-.
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 248 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRS-GAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 248 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB-SCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccc-cceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCC
Confidence 7777654332 34588999887653322 111111 1222233 56677777654 568999998875433222
Q ss_pred cCCCCCCcceEEEcCCCCEEEEEECC-----CcEEEEEcCCC
Q 001336 601 ADGGLQASPCIRFNKEGILLAVSTND-----NGIKILANADG 637 (1097)
Q Consensus 601 ~~~~~~~v~~v~~s~~~~~l~s~~~d-----g~i~iw~~~~~ 637 (1097)
....... .+++. -++.+++.|+.+ ..+.+||..+.
T Consensus 249 ~p~~r~~-~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 249 MKHRRSA-LGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CSSCCBS-CEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCCccc-eEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 1111111 12222 256777777644 35778887765
No 330
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.32 E-value=0.17 Score=54.69 Aligned_cols=149 Identities=16% Similarity=0.153 Sum_probs=93.0
Q ss_pred CCCEEEEEECCCcEEEEEcccceEEEEeccc----ccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccc---------
Q 001336 859 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGH----QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQ--------- 925 (1097)
Q Consensus 859 ~~~~la~g~~dg~v~vwd~~~~~~~~~l~~h----~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~--------- 925 (1097)
++.-++++- ++.||.-++..+...+.+... -..|..+..||+|.+||..+. ..|.|-.+..+...
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccc
Confidence 455555543 467777776643323333322 236888999999999999875 46888888733211
Q ss_pred -ceeeEeecCCCCCCccCCeEEEEcCCCc---EEEE-EeCCeEEEEeCCCccee--------eeeeccCCCCCEEEEEEe
Q 001336 926 -ASKFLTIPNGRTASALADTRVQFHLDQT---HLLA-VHETQIAIYEAPKLECL--------KQFVPREASGPITHATYS 992 (1097)
Q Consensus 926 -~~~~~~~~~~~~~~~~~v~~l~~s~dg~---~l~~-~~d~~v~vwd~~~~~~~--------~~~~~~~h~~~v~~v~~s 992 (1097)
..+...+..........|..+.|+|-+. .|++ ..|+.|++||+...... ..+....+...|.+++|.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 1112222211111126799999999543 5555 89999999999863211 112222344789999999
Q ss_pred cCCCEEEEEe--cCCeEEE
Q 001336 993 CDSQSIYVAF--EEGSVGV 1009 (1097)
Q Consensus 993 ~dg~~l~s~s--~Dg~v~v 1009 (1097)
.+|-.|...+ ..|.|+-
T Consensus 189 ~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp TTSSCEEEEECTTSCEEEE
T ss_pred CCCcEEEEEecCCCCCEEE
Confidence 9887777755 7787763
No 331
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.29 E-value=1 Score=50.56 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=62.6
Q ss_pred CCeeEEEEccCCCEEEEEeC-CeEEEEEcCCCcee--EEeCC------CCCCeEEEEEeCC---CCCEEEEEEC------
Q 001336 807 DAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTM--TTFMP------PPPAATFLAFHPQ---DNNIIAIGME------ 868 (1097)
Q Consensus 807 ~~v~~l~~s~dg~~la~~sd-g~i~iwd~~~~~~~--~~~~~------~~~~i~~l~~sp~---~~~~la~g~~------ 868 (1097)
...+.|+|.|||+++++-.. +.|++++..+++.. ..+.. .......|+|+|+ ++.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 35679999999998887765 47888886555432 22221 2355779999994 3434443332
Q ss_pred ------CCcEEEEEcccc-------eEEE-Eecc-cccCeEEEEEecCCCEEEEEeC
Q 001336 869 ------DSSIQIYNVRVD-------EVKT-KLKG-HQKRITGLAFSNTLNVLVSSGA 910 (1097)
Q Consensus 869 ------dg~v~vwd~~~~-------~~~~-~l~~-h~~~V~~l~~s~dg~~l~s~~~ 910 (1097)
...|.-|++..+ +.+. .+.. .......|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234555555321 1121 1221 1123588999999998887664
No 332
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.18 E-value=0.34 Score=51.79 Aligned_cols=154 Identities=8% Similarity=0.009 Sum_probs=75.7
Q ss_pred EEccCCCEEEEEEC----CC-------EEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCC-------
Q 001336 388 MWSPDGTLFGVAYS----KH-------IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED------- 449 (1097)
Q Consensus 388 ~~spd~~~las~~~----dg-------~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d------- 449 (1097)
+...+++.++.|+. ++ .+.+||..+++- .....+.........+.+ +++ +++.|+.+
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~ 126 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW-VGLPPLPSARCLFGLGEV--DDK--IYVVAGKDLQTEASL 126 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEE-EECSCBSSCBCSCEEEEE--TTE--EEEEEEEBTTTCCEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcE-EECCCCCccccccceEEE--CCE--EEEEcCccCCCCccc
Confidence 34457888888873 12 277788877653 222122211111222222 455 56666643
Q ss_pred CcEEEEECCCCceeEEee--cCCcCeEEEeecccCCccEEEEEcC------CCeEEEEEcCCCCceeeecCCCC-ceEEE
Q 001336 450 RVIKVWDAVTGTKQYIFE--GHESPVYSICPHHKENIQFIFSTAT------DGKIKAWLYDNLGSRVDYDAPGH-SSTMM 520 (1097)
Q Consensus 450 ~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~-~v~~~ 520 (1097)
..+.++|+.+.+....-. .....- +++. .++.+++.|+. -..+.+||+.+..-...-..... .-.++
T Consensus 127 ~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~---~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 202 (318)
T 2woz_A 127 DSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS---HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGV 202 (318)
T ss_dssp EEEEEEETTTTEEEEECCCSSCEESC-EEEE---ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred ceEEEEeCCCCCEeECCCCCCccccc-EEEE---ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceE
Confidence 357888988776543211 111111 1221 23356666664 23588888876543222111111 11122
Q ss_pred EEccCCCEEEEeeeCCCC-CceEEEEeCCCCe
Q 001336 521 AYSADGARLFSCGTNKEG-ESYLVEWNESEGA 551 (1097)
Q Consensus 521 ~~s~~~~~l~~~~~~~~~-~~~i~~wd~~~~~ 551 (1097)
+. -+++.++.++.+..+ ...+.+||+.+.+
T Consensus 203 ~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 203 AI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 22 366777777654321 2357889988764
No 333
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.91 E-value=0.4 Score=51.19 Aligned_cols=230 Identities=12% Similarity=0.046 Sum_probs=109.5
Q ss_pred EEEEEECCCEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeC----CC-------cEEEEECCCCcee
Q 001336 395 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE----DR-------VIKVWDAVTGTKQ 463 (1097)
Q Consensus 395 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~----d~-------~i~iwd~~~~~~~ 463 (1097)
.++.|+. .+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.++|..+++..
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~ 91 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV 91 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEE
T ss_pred hhhcccc--ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEE
Confidence 3444443 37899998876432 12222111222223344566 6777773 12 2778898877654
Q ss_pred EE--eecCCcCeEEEeecccCCccEEEEEcCC-------CeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeee
Q 001336 464 YI--FEGHESPVYSICPHHKENIQFIFSTATD-------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGT 534 (1097)
Q Consensus 464 ~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 534 (1097)
.. +...... .+++. . ++.+++.|+.+ ..+.+||..+..-...-..........+...+++.++.++.
T Consensus 92 ~~~~~p~~r~~-~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 167 (318)
T 2woz_A 92 GLPPLPSARCL-FGLGE--V-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGK 167 (318)
T ss_dssp ECSCBSSCBCS-CEEEE--E-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCE
T ss_pred ECCCCCccccc-cceEE--E-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCC
Confidence 32 1111111 12222 1 33566777653 24677777654322221111111111122246777777765
Q ss_pred CCC--CCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEecCCCCCC
Q 001336 535 NKE--GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLASIDADGGLQA 607 (1097)
Q Consensus 535 ~~~--~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 607 (1097)
+.. ....+.+||+.+.+-...-.......-.+++. -++..++.|+.+ ..+.+||..+.+-...-..... .
T Consensus 168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r 244 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--R 244 (318)
T ss_dssp ESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--C
T ss_pred CCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--c
Confidence 321 13458999998875433221111101112222 256677777633 3577899887654332221111 1
Q ss_pred cceEEEcCCCCEEEEEECC--------------CcEEEEEcCCC
Q 001336 608 SPCIRFNKEGILLAVSTND--------------NGIKILANADG 637 (1097)
Q Consensus 608 v~~v~~s~~~~~l~s~~~d--------------g~i~iw~~~~~ 637 (1097)
....+..-++.+++.|+.+ ..+.+||..+.
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 245 SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp BSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred cceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 1112222356677776653 35777887765
No 334
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.90 E-value=0.31 Score=53.19 Aligned_cols=241 Identities=12% Similarity=0.077 Sum_probs=113.8
Q ss_pred CCCEEEEEe--CCeEEEEEcCC----CceeEEeCCCCCCeEEEEEeCCCCCEEEEEEC-C---------CcEEEEEcccc
Q 001336 817 NDSYVMSAS--GGKISLFNMMT----FKTMTTFMPPPPAATFLAFHPQDNNIIAIGME-D---------SSIQIYNVRVD 880 (1097)
Q Consensus 817 dg~~la~~s--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~-d---------g~v~vwd~~~~ 880 (1097)
++++++.|+ ...+.+||..+ ++.+..+......-.+++.. ++++++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 677777776 46799999863 22222222111111223332 5678887776 2 46899998876
Q ss_pred eEEEEeccc-ccCeEEEEEecCCCEEEEEeCC---------------------------------------CcEEEEEcC
Q 001336 881 EVKTKLKGH-QKRITGLAFSNTLNVLVSSGAD---------------------------------------SQLCVWSTD 920 (1097)
Q Consensus 881 ~~~~~l~~h-~~~V~~l~~s~dg~~l~s~~~D---------------------------------------g~i~iwd~~ 920 (1097)
+=...-... .......+...++++++.||.+ ..+.+||+.
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 422211111 1111222223577888888865 468889988
Q ss_pred CCcccceeeEee-cCCCCCCccCCeEEEEcCCCcEEEE-Ee------CCeEEEEeC--CCcceeeeeeccCCCCCEEEEE
Q 001336 921 GWEKQASKFLTI-PNGRTASALADTRVQFHLDQTHLLA-VH------ETQIAIYEA--PKLECLKQFVPREASGPITHAT 990 (1097)
Q Consensus 921 ~~~~~~~~~~~~-~~~~~~~~~~v~~l~~s~dg~~l~~-~~------d~~v~vwd~--~~~~~~~~~~~~~h~~~v~~v~ 990 (1097)
+.+-. .+.. +.... .-.+++.. ++++++. +. ...+.+||+ .+.+-...-............+
T Consensus 177 ~~~W~---~~~~~p~~~~----~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~ 248 (357)
T 2uvk_A 177 TQQWS---YAGESPWYGT----AGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFA 248 (357)
T ss_dssp TTEEE---EEEECSSCCC----BSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEE
T ss_pred CCcEE---ECCCCCCCCc----ccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceE
Confidence 75522 2221 11111 11223333 4555554 32 235777877 3332211111001111112223
Q ss_pred EecCCCEEEEEecC----------------------CeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCC
Q 001336 991 YSCDSQSIYVAFEE----------------------GSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPN 1048 (1097)
Q Consensus 991 ~s~dg~~l~s~s~D----------------------g~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~ 1048 (1097)
...++++++.|+.+ ..+.+||+.+.+.... . .+|..... ..++.+ ++.
T Consensus 249 ~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~-~---~~p~~r~~---~~~~~~---~~~ 318 (357)
T 2uvk_A 249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS-G---ELSQGRAY---GVSLPW---NNS 318 (357)
T ss_dssp EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE-E---ECSSCCBS---SEEEEE---TTE
T ss_pred EEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC-C---CCCCCccc---ceeEEe---CCE
Confidence 34477888877742 2577899887664432 1 12222111 111221 578
Q ss_pred EEEEEecCC--c--EEEEecCCCCcccCCCCCC
Q 001336 1049 QFALGLTDG--G--VYIIEPLEAEGRWGTSPPN 1077 (1097)
Q Consensus 1049 ~l~s~~~Dg--~--v~~W~~~~~~~~~~~~~~~ 1077 (1097)
+++.|+.++ . =.+|-+.-..++|....|-
T Consensus 319 i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 319 LLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp EEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred EEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 888888654 2 2345444445557766664
No 335
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.87 E-value=0.35 Score=60.43 Aligned_cols=234 Identities=12% Similarity=0.107 Sum_probs=140.1
Q ss_pred EEEEccCCCEEEEEeCCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccc-eEEEEeccc
Q 001336 811 CFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD-EVKTKLKGH 889 (1097)
Q Consensus 811 ~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~-~~~~~l~~h 889 (1097)
+.-++|..+.||.-.+.+++|+|+++...+..+.- ...|.-=.|-. .+.|+..+ +..|+-|++... .+++.+..|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence 34577888888887788999999988877777653 34565556653 45666655 567999999642 344444444
Q ss_pred ----ccCeEEEEEecCCCEEEEEeC-------CCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEE---cCCCcEE
Q 001336 890 ----QKRITGLAFSNTLNVLVSSGA-------DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQF---HLDQTHL 955 (1097)
Q Consensus 890 ----~~~V~~l~~s~dg~~l~s~~~-------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---s~dg~~l 955 (1097)
...|..-..+++.++++..|- .|.+.+|..+.+. -+..+||.. .-..+.+ .+....+
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~---~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA---SFAQFKMEGNAEESTLF 216 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHh---hhheeccCCCCCCceEE
Confidence 456777888899999886543 4788899888743 333444432 1111111 1122233
Q ss_pred EEE----eCCeEEEEeCCCc---c-ee-----ee-eeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeee
Q 001336 956 LAV----HETQIAIYEAPKL---E-CL-----KQ-FVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRI 1021 (1097)
Q Consensus 956 ~~~----~d~~v~vwd~~~~---~-~~-----~~-~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~ 1021 (1097)
+.+ ..+.+.|-++... . .. .. +.+..-..-..++..|+.-..+...+.-|.|.++|+.++..+.+-
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 333 2367888887543 1 11 01 111112334456777877778888888999999999999987554
Q ss_pred CCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCC
Q 001336 1022 NPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEA 1067 (1097)
Q Consensus 1022 ~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~ 1067 (1097)
..+. ..|+.. +.+. ...-++.....|.|.--.+.+.
T Consensus 297 ris~-------~~iF~~--~~~~-~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 297 RISG-------ETIFVT--APHE-ATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred cccC-------CceEEe--ccCC-CCCceEEEcCCceEEEEEEccc
Confidence 4222 334322 2222 2233444556676665555543
No 336
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.72 E-value=0.61 Score=52.07 Aligned_cols=114 Identities=17% Similarity=0.098 Sum_probs=79.2
Q ss_pred CCeeEEEEccCCCEEEEEe--CCeEEEEEcCCCce-------------eEEeCCCCCCeEEEEEeCCCCCEEEEEECCCc
Q 001336 807 DAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT-------------MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSS 871 (1097)
Q Consensus 807 ~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~-------------~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~ 871 (1097)
.....+.++|||+++++++ +.++.++|++.... ....+ -.-.....+|.+ +|....+-.-|.+
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecce
Confidence 4456789999999999998 78999999864211 11122 234578899999 7755566668999
Q ss_pred EEEEEcccc----------eEEEEecccccCeEEEEE------ecCCCEEEEEeC---CCc----------EEEEEcCCC
Q 001336 872 IQIYNVRVD----------EVKTKLKGHQKRITGLAF------SNTLNVLVSSGA---DSQ----------LCVWSTDGW 922 (1097)
Q Consensus 872 v~vwd~~~~----------~~~~~l~~h~~~V~~l~~------s~dg~~l~s~~~---Dg~----------i~iwd~~~~ 922 (1097)
|.-|++... ..+.++.-|-.+ -.+.- .+||++|++... |.. -.+.|+...
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGd 479 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGD 479 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSS
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCC
Confidence 999999764 467777777653 33333 479999998753 443 356777664
Q ss_pred c
Q 001336 923 E 923 (1097)
Q Consensus 923 ~ 923 (1097)
+
T Consensus 480 k 480 (638)
T 3sbq_A 480 E 480 (638)
T ss_dssp S
T ss_pred c
Confidence 4
No 337
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.63 E-value=0.13 Score=50.11 Aligned_cols=148 Identities=12% Similarity=-0.058 Sum_probs=84.1
Q ss_pred CeeEEEEccCCCEEEEEeCCeEEEEEcCCCcee------EEeC-CCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccc
Q 001336 808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM------TTFM-PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD 880 (1097)
Q Consensus 808 ~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~------~~~~-~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~ 880 (1097)
.+..++|+|+|.+.++ .+|.+.-.+..+.... ..+- .--..-.++.|.| ++.+.++ .||.|+-++..+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 5679999999998888 8887666665442211 1110 0001147899999 8888777 5688877765331
Q ss_pred eE-------EEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCccccee--eEeecCCCCCCccCCeEEEEcCC
Q 001336 881 EV-------KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASK--FLTIPNGRTASALADTRVQFHLD 951 (1097)
Q Consensus 881 ~~-------~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~v~~l~~s~d 951 (1097)
.. ...-+.--..+..|.|.|+|.+.+.. |+.++-+....+...... ...+-.+.. ..-+.+.|+++
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~---~~yr~l~f~~~ 192 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW---DTFKFLFFSSV 192 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG---GGEEEEEECTT
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc---ceEEEEEECCC
Confidence 10 11111122467999999999887776 776544333322211110 011110111 12455779999
Q ss_pred CcEEEEEeCCeEEE
Q 001336 952 QTHLLAVHETQIAI 965 (1097)
Q Consensus 952 g~~l~~~~d~~v~v 965 (1097)
|.+.++. ++.++-
T Consensus 193 G~l~~v~-~g~~Y~ 205 (236)
T 1tl2_A 193 GTLFGVQ-GGKFYE 205 (236)
T ss_dssp SCEEEEE-TTEEEE
T ss_pred CcEEEEe-CCeEEe
Confidence 9988877 664443
No 338
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.58 E-value=1.6 Score=45.78 Aligned_cols=182 Identities=9% Similarity=0.052 Sum_probs=99.8
Q ss_pred EEEEccCCCeEEEEEeCC-------------CeEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCCCCeEEEEEc
Q 001336 324 SMDFHPVQQILLVVGTNM-------------GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 390 (1097)
Q Consensus 324 ~v~fspdg~~lla~gs~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 390 (1097)
+--|+++|.+|..+...+ +.|+..++..++... +.. .. +..|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~--~~--~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDP--DP--CIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EEC--SC--EEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eec--CC--ccEEE
Confidence 345689999988877654 356666666554322 111 11 23788
Q ss_pred cCCCEEEEEE--CCC--EEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEe
Q 001336 391 PDGTLFGVAY--SKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 466 (1097)
Q Consensus 391 pd~~~las~~--~dg--~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 466 (1097)
+++++|+-.. .++ .|..-++.... .. .+..+.. .+|+++++. +..+......|.+-++..+.....+
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence 8999999886 333 45555555433 22 2333432 456788884 2334334678999998766544433
Q ss_pred ecCCcCeEEEeecccCCccEEEEEcCC--CeEEEEEcCCCCceeeecCCCCceEEEEEccCCCEEEEeeeCCCCCceEEE
Q 001336 467 EGHESPVYSICPHHKENIQFIFSTATD--GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 544 (1097)
Q Consensus 467 ~~h~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 544 (1097)
.+ ... ..++ |++.+|+-...+ ..|..-+++..... .+. ...+ ..|+|++++|..+.... ...|..
T Consensus 184 ~~---~~~-~~~~--P~g~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt--~~~~--~~~~~~g~~Iy~~~~~~--~~~i~~ 250 (302)
T 3s25_A 184 DC---NCY-KPVV--LDDTNVYYMDVNRDNAIVHVNINNPNPV-VLT--EANI--EHYNVYGSLIFYQRGGD--NPALCV 250 (302)
T ss_dssp CS---CEE-EEEE--EETTEEEEEEGGGTTEEEEECSSSCCCE-ECS--CSCE--EEEEEETTEEEEEECSS--SCEEEE
T ss_pred CC---Ccc-ceee--ecCCEEEEEEcCCCcEEEEEECCCCCeE-EEe--CCCc--ceEEECCCEEEEEECCC--CcEEEE
Confidence 32 222 2343 344566555433 34555555543322 222 2223 34788999987764321 246777
Q ss_pred EeCCCCe
Q 001336 545 WNESEGA 551 (1097)
Q Consensus 545 wd~~~~~ 551 (1097)
-++....
T Consensus 251 ~~~DG~~ 257 (302)
T 3s25_A 251 VKNDGTG 257 (302)
T ss_dssp EETTSCC
T ss_pred EECCCCc
Confidence 7765443
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.53 E-value=0.77 Score=57.49 Aligned_cols=89 Identities=6% Similarity=0.022 Sum_probs=56.2
Q ss_pred CceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCcceEEEcCCCC
Q 001336 539 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI 618 (1097)
Q Consensus 539 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 618 (1097)
...|.+.|+..+..+..-.- ...+.-.+|..+.++.-. ..++.|||+++...+...... ..|.--.|-.+ +
T Consensus 47 ~~~vvIidl~~~~~~~rrpi----~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~---e~VvfWkWis~-~ 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWISL-N 117 (1630)
T ss_pred CceEEEEECCCCCCcccccc----cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccC---CCceEEEecCC-C
Confidence 34788889887654422211 122345778777666554 789999999998888777653 24545555433 3
Q ss_pred EEEEEECCCcEEEEEcCCC
Q 001336 619 LLAVSTNDNGIKILANADG 637 (1097)
Q Consensus 619 ~l~s~~~dg~i~iw~~~~~ 637 (1097)
.|+..+. ..|+-|++...
T Consensus 118 ~l~lVT~-~aVyHW~~~~~ 135 (1630)
T 1xi4_A 118 TVALVTD-NAVYHWSMEGE 135 (1630)
T ss_pred eeEEEcC-CeEEEeccCCC
Confidence 4555443 47899998643
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.51 E-value=0.067 Score=52.10 Aligned_cols=147 Identities=12% Similarity=0.047 Sum_probs=87.9
Q ss_pred CCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceE------EEEe--cccccCeEEEEEecCCCEEEEEeCCCcEEEEEc
Q 001336 848 PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV------KTKL--KGHQKRITGLAFSNTLNVLVSSGADSQLCVWST 919 (1097)
Q Consensus 848 ~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~------~~~l--~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~ 919 (1097)
..++.++|+| ++.+.++ .+|.++-.+..+++. -..+ .+... ..++.|.|+|.+.++ .||.|.-++-
T Consensus 41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 3677999999 8887777 677666665543110 1111 01222 478899999988887 5698887876
Q ss_pred CCCcccceee--EeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcce-----eeeeeccCCCCCEEEEEEe
Q 001336 920 DGWEKQASKF--LTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLEC-----LKQFVPREASGPITHATYS 992 (1097)
Q Consensus 920 ~~~~~~~~~~--~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~-----~~~~~~~~h~~~v~~v~~s 992 (1097)
.+.....+.- ..+-.+.- ..+..+.|.|+|.+-++. ++.++-....++.. .......+....-+.+.|+
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw---~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~ 190 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGW---SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS 190 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSG---GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred CcCCCCceeccccEeccCCC---CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence 4433332211 11111111 347899999999999888 88865544442221 1112111334456667799
Q ss_pred cCCCEEEEEecCCe
Q 001336 993 CDSQSIYVAFEEGS 1006 (1097)
Q Consensus 993 ~dg~~l~s~s~Dg~ 1006 (1097)
++|.+.++. ++.
T Consensus 191 ~~G~l~~v~--~g~ 202 (236)
T 1tl2_A 191 SVGTLFGVQ--GGK 202 (236)
T ss_dssp TTSCEEEEE--TTE
T ss_pred CCCcEEEEe--CCe
Confidence 998877755 663
No 341
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.15 Score=54.27 Aligned_cols=199 Identities=10% Similarity=0.053 Sum_probs=109.2
Q ss_pred CEEEEEECCCcEEEEEcccceEEEEeccc-ccCeEEEEE--e-cCCCEEEEE-eCCCcEEEEEcCCCcccceeeEeecCC
Q 001336 861 NIIAIGMEDSSIQIYNVRVDEVKTKLKGH-QKRITGLAF--S-NTLNVLVSS-GADSQLCVWSTDGWEKQASKFLTIPNG 935 (1097)
Q Consensus 861 ~~la~g~~dg~v~vwd~~~~~~~~~l~~h-~~~V~~l~~--s-~dg~~l~s~-~~Dg~i~iwd~~~~~~~~~~~~~~~~~ 935 (1097)
.++++++.||.|+-+|..+|+.+.+++.. ..++....- . .++..++.. +.||.|..++..+|... . ...++.-
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~-~-~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK-L-PLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE-E-EEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE-e-eeccccc
Confidence 47889999999999999999999888754 122222110 0 123333333 57999999998876422 1 1222110
Q ss_pred CCCCccCCeEEEE------------cCCCcEEEEEeCCeEEEEeCCCcceeeeeeccCCCCC-----EEEEEEe-----c
Q 001336 936 RTASALADTRVQF------------HLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGP-----ITHATYS-----C 993 (1097)
Q Consensus 936 ~~~~~~~v~~l~~------------s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~-----v~~v~~s-----~ 993 (1097)
.. ..-+.. +.++..++.+.++++...|+.+|+.+..+....-.+. ..|.... .
T Consensus 89 v~-----~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~ 163 (339)
T 2be1_A 89 VS-----TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE 163 (339)
T ss_dssp HT-----TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred ee-----ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence 00 011221 2455555557999999999999999988864321111 1111111 1
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCCCCccc
Q 001336 994 DSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRW 1071 (1097)
Q Consensus 994 dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~~~~~~ 1071 (1097)
.+..|+.+..+..+.+.+ .+|+ +..+....+.+......+.. .... ..|+.+ +.++.||.|.-.|...++..|
T Consensus 164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~-~~~~-s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLAL-QNTF-SKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHT-TCSS-CSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCCeEEEecceEEEEEEC-CCCC-eEEEeccccccccccccccc-cccc-ccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 245677788888888777 5564 33322111111110000000 0000 013444 457889999999998888889
No 342
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.42 E-value=0.73 Score=50.10 Aligned_cols=147 Identities=9% Similarity=-0.007 Sum_probs=69.2
Q ss_pred CcEEEEECCCCceeEEeecCC-cCe-EEEeecccCCccEEEEEcC------CCeEEEEEcCCCCceeeecC----CCCce
Q 001336 450 RVIKVWDAVTGTKQYIFEGHE-SPV-YSICPHHKENIQFIFSTAT------DGKIKAWLYDNLGSRVDYDA----PGHSS 517 (1097)
Q Consensus 450 ~~i~iwd~~~~~~~~~~~~h~-~~v-~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~----~~~~v 517 (1097)
..+.++|+.+.+....-.... ..- .+++. . ++.+++.|+. ...+.+||++.......... .....
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~--~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~ 244 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN--K-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA 244 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE--E-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE--E-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence 578999998876544321111 111 22332 1 3356666654 24566777633333332211 11111
Q ss_pred EEEEEccCCCEEEEeeeCCCC------------------CceEEEEeCCCCe--eeEEecCCCCcceEEEEEcCCCCEEE
Q 001336 518 TMMAYSADGARLFSCGTNKEG------------------ESYLVEWNESEGA--VKRTYHGLGKRSVGVVQFDTTKNRFL 577 (1097)
Q Consensus 518 ~~~~~s~~~~~l~~~~~~~~~------------------~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~ 577 (1097)
...+...+++.++.++.+.++ ...+.+||+.+.+ .+..+..... ...+ ...++..++
T Consensus 245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~--~~~~~~i~v 321 (357)
T 2uvk_A 245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRA-YGVS--LPWNNSLLI 321 (357)
T ss_dssp SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCB-SSEE--EEETTEEEE
T ss_pred cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcc-ccee--EEeCCEEEE
Confidence 112233466777777643211 0347789988654 3333333222 1222 234667888
Q ss_pred EEeCCC------cEEEEECCCCceEEEEecC
Q 001336 578 AAGDEF------MIKFWDMDNVNLLASIDAD 602 (1097)
Q Consensus 578 ~~~~dg------~i~iwd~~~~~~~~~~~~~ 602 (1097)
.||.++ .|.++++++++.+.....+
T Consensus 322 ~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 322 IGGETAGGKAVTDSVLITVKDNKVTVQNLEH 352 (357)
T ss_dssp EEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred EeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence 888543 3666788888877765543
No 343
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.42 E-value=4.3 Score=45.44 Aligned_cols=110 Identities=12% Similarity=0.093 Sum_probs=63.2
Q ss_pred cCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCC--CCccCCeEEEEcCC---CcEEEEE--e----
Q 001336 891 KRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT--ASALADTRVQFHLD---QTHLLAV--H---- 959 (1097)
Q Consensus 891 ~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~s~d---g~~l~~~--~---- 959 (1097)
...++|+|.|||+++++-...+.|++++...++.. ....+..... .....+..++|+|| +.+|.++ .
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~--~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK--TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe--EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34679999999998776544346888876544422 1222222110 01245678999996 5555553 2
Q ss_pred --------CCeEEEEeCCCc-------ceee-eeeccCCCCCEEEEEEecCCCEEEEEec
Q 001336 960 --------ETQIAIYEAPKL-------ECLK-QFVPREASGPITHATYSCDSQSIYVAFE 1003 (1097)
Q Consensus 960 --------d~~v~vwd~~~~-------~~~~-~~~~~~h~~~v~~v~~s~dg~~l~s~s~ 1003 (1097)
...|.-|+...+ +.+. .+.. ........++|.+||.+.++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEECC
Confidence 235666665432 1111 1221 11235789999999998777654
No 344
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=93.24 E-value=13 Score=41.57 Aligned_cols=110 Identities=13% Similarity=0.007 Sum_probs=59.7
Q ss_pred CCeEEEEEccCCC-EEEEEECCCEEEEEEccCCeeeeeeeeee---------cccCcEEEEEEecC---CCcEEEEEEeC
Q 001336 382 ASVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIE---------AHVGSVNDLAFSYP---NKQLSVVTCGE 448 (1097)
Q Consensus 382 ~~V~~v~~spd~~-~las~~~dg~i~iwd~~~~~~~~~~~~l~---------~h~~~V~~l~~s~d---~~~~~l~s~s~ 448 (1097)
..-+.|+|.|||. .|+++...|.|++++.........+..+. +.......|+|+|+ +..+++.-...
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3567899999996 56667789999999754321101111111 11456889999996 33323332221
Q ss_pred -C----------CcEEEEECCCC----------ceeEEee--cCCcCeEEEeecccCCccEEEEEcCC
Q 001336 449 -D----------RVIKVWDAVTG----------TKQYIFE--GHESPVYSICPHHKENIQFIFSTATD 493 (1097)
Q Consensus 449 -d----------~~i~iwd~~~~----------~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d 493 (1097)
+ ..|.-|.+..+ +.+..+. ........|+| .+||.+.++.+..
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~f--gpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLF--GPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEE--CTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeE--CCCCcEEEEeCCC
Confidence 1 13444665421 2233332 11223567887 5677777766553
No 345
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.14 E-value=3.4 Score=42.82 Aligned_cols=223 Identities=13% Similarity=0.081 Sum_probs=115.7
Q ss_pred CeeEEEEccCCCEEEEEeCCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEec
Q 001336 808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK 887 (1097)
Q Consensus 808 ~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~ 887 (1097)
.|..++....- .++.. ||.|..|-....-.+..-......|..++... ...++. . ||.|+.|-....-.+..-.
T Consensus 25 ~i~~ia~G~~h-~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE-EEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe-EEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 46666654432 23333 88888886543222211111223577777653 334444 5 9999999865421111111
Q ss_pred ccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEe
Q 001336 888 GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYE 967 (1097)
Q Consensus 888 ~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd 967 (1097)
.-...|..++...+...+ -. ||.|+.|-........ .+... ...|..++...+... +.. ++.|+.|-
T Consensus 99 ~~~~~v~~ia~G~~hs~a--l~-~G~v~~wG~n~~gqlg-----~~~~~---~~~i~~i~~G~~~~~-~l~-~G~v~~wG 165 (282)
T 3qhy_B 99 EARSGVDAIAAGAWASYA--LK-DGKVIAWGDDSDGQTT-----VPAEA---QSGVTALDGGVYTAL-AVK-NGGVIAWG 165 (282)
T ss_dssp GGSSSEEEEEEETTEEEE--EE-TTEEEEEECCTTSTTS-----CCGGG---GSSEEEEEECSSEEE-EEE-TTEEEEEE
T ss_pred ccCCCeEEEECcCCEEEE--Ee-CCeEEEecCCCCCcCC-----CCccC---CCCeEEEEcccCEEE-EEE-CCEEEEec
Confidence 112468888776543333 34 8999999865532211 11100 133555555544333 334 89999998
Q ss_pred CCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCC
Q 001336 968 APKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDP 1047 (1097)
Q Consensus 968 ~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~ 1047 (1097)
......+.... .-...|..++...+-. ++. .||.|..|-....-++- +|......|..++.. ..
T Consensus 166 ~n~~gqlg~p~--~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg-------~p~~~~~~v~~i~~G----~~ 229 (282)
T 3qhy_B 166 DNYFGQTTVPA--EAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTT-------VPTEALSGVSAIASG----EW 229 (282)
T ss_dssp CCTTSTTSCCG--GGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTC-------CCGGGGSSCCEEEEC----SS
T ss_pred CCCCCCCCCce--ecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCC-------CCcccCCCceEEEcC----CC
Confidence 77543332211 1135687777654433 333 59999999765432221 111111345555332 22
Q ss_pred CEEEEEecCCcEEEEecCCC
Q 001336 1048 NQFALGLTDGGVYIIEPLEA 1067 (1097)
Q Consensus 1048 ~~l~s~~~Dg~v~~W~~~~~ 1067 (1097)
..++. . ||+|+.|=-...
T Consensus 230 h~~al-~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 230 YSLAL-K-NGKVIAWGSSRT 247 (282)
T ss_dssp CEEEE-E-TTEEEEESTTCC
T ss_pred EEEEE-E-CCEEEEecCCCC
Confidence 33443 4 999999976553
No 346
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.74 E-value=0.47 Score=50.45 Aligned_cols=191 Identities=10% Similarity=0.093 Sum_probs=103.6
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeecC-CcCeEEEeeccc-CCccEEEEE-cCCCeEEEEEcCCCCceeeecCC----C
Q 001336 442 SVVTCGEDRVIKVWDAVTGTKQYIFEGH-ESPVYSICPHHK-ENIQFIFST-ATDGKIKAWLYDNLGSRVDYDAP----G 514 (1097)
Q Consensus 442 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~-~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~----~ 514 (1097)
+++.++.||.|.-.|..+|+.+-+++.. ..++....-... .++..++.. +.||.|..++..++..+..+... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 6899999999999999999999888654 123322211111 122333333 68999999998766444433221 1
Q ss_pred CceEE---EEE-----ccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcc------eEEEEEc-----CCCCE
Q 001336 515 HSSTM---MAY-----SADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS------VGVVQFD-----TTKNR 575 (1097)
Q Consensus 515 ~~v~~---~~~-----s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~------v~~~~~~-----~~~~~ 575 (1097)
.++.. ..+ +..+..+++++. ++.+...|+.+|+.+..+....... ..|.... ..+..
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 11111 000 013456666665 4479999999999999886542111 0011110 12356
Q ss_pred EEEEeCCCcEEEEECCCCceEEEE-----ecCCCCCCc-ceEEEcCCCCEEEEEECCCcEEEEEcCCCce
Q 001336 576 FLAAGDEFMIKFWDMDNVNLLASI-----DADGGLQAS-PCIRFNKEGILLAVSTNDNGIKILANADGIR 639 (1097)
Q Consensus 576 l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~v-~~v~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 639 (1097)
++.+..+..+.+.+ .+|+ +..+ ........+ ..-..+.++.+ +.++.||.|..+|..+|..
T Consensus 168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~ 234 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIA 234 (339)
T ss_dssp EEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCE
T ss_pred EEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcE
Confidence 77777777777766 3443 2111 110000000 00011234555 4578899999999888843
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.58 E-value=6.8 Score=46.73 Aligned_cols=199 Identities=13% Similarity=0.090 Sum_probs=104.5
Q ss_pred cCCCEEEEEe-C----CeEEEEEcCCCceeEEe-C-----CCC--CCeEEEEEeCCCCCEEEEEECCC------cEEEEE
Q 001336 816 KNDSYVMSAS-G----GKISLFNMMTFKTMTTF-M-----PPP--PAATFLAFHPQDNNIIAIGMEDS------SIQIYN 876 (1097)
Q Consensus 816 ~dg~~la~~s-d----g~i~iwd~~~~~~~~~~-~-----~~~--~~i~~l~~sp~~~~~la~g~~dg------~v~vwd 876 (1097)
-++.+++.|+ + +.+.+||..+.+-...- . ... ..-.++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5667777665 3 35889998776533322 1 111 1234444432 466788877543 588899
Q ss_pred cccceEEEEecccccCeE-EEEEecCCCEEEEEeCCC--cEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCC-C
Q 001336 877 VRVDEVKTKLKGHQKRIT-GLAFSNTLNVLVSSGADS--QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD-Q 952 (1097)
Q Consensus 877 ~~~~~~~~~l~~h~~~V~-~l~~s~dg~~l~s~~~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g 952 (1097)
..+.+-...-........ +++...++++++.||.++ .+.+||+.+.+ +..+...............+.+..+ +
T Consensus 475 ~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~---W~~~~~~g~~p~~r~~~~a~v~~~~~~ 551 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI---FKDVTPKDEFFQNSLVSAGLEFDPVSK 551 (695)
T ss_dssp TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE---EEECCCSSGGGGSCCBSCEEEEETTTT
T ss_pred CCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc---eEEccCCCCCCCcccceeEEEEeCCCC
Confidence 887542221111111111 222224788888888765 68999988854 2222210000000012334555655 5
Q ss_pred cEEEEE-e--C-----CeEEEEeCCCcce-----eeeeec-cCCCCCEEEEEEecCCCEEEEEecC--------CeEEEE
Q 001336 953 THLLAV-H--E-----TQIAIYEAPKLEC-----LKQFVP-REASGPITHATYSCDSQSIYVAFEE--------GSVGVL 1010 (1097)
Q Consensus 953 ~~l~~~-~--d-----~~v~vwd~~~~~~-----~~~~~~-~~h~~~v~~v~~s~dg~~l~s~s~D--------g~v~vw 1010 (1097)
++++.+ . + +.+.+||..+.+- -..+.. ......-.+++...++++++.|+.+ ..|.+|
T Consensus 552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 555553 3 2 4689999988761 111110 0001111123334447888888743 468999
Q ss_pred eCCCCcee
Q 001336 1011 TASTLRLR 1018 (1097)
Q Consensus 1011 d~~~~~~~ 1018 (1097)
|..+.+..
T Consensus 632 d~~t~~W~ 639 (695)
T 2zwa_A 632 DPLSETLT 639 (695)
T ss_dssp ETTTTEEE
T ss_pred ECCCCeEE
Confidence 99987665
No 348
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=89.91 E-value=21 Score=37.25 Aligned_cols=179 Identities=8% Similarity=0.074 Sum_probs=101.8
Q ss_pred EEEccCCCEEEEEECC--------------CEEEEEEccCCeeeeeeeeeecccCcEEEEEEecCCCcEEEEEEe----C
Q 001336 387 VMWSPDGTLFGVAYSK--------------HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG----E 448 (1097)
Q Consensus 387 v~~spd~~~las~~~d--------------g~i~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~s----~ 448 (1097)
--++++|++|+.+... ..|+..++..++... +.. .. +..|+++++. |+-.. .
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~----l~~--~~--~~~~s~~g~~--Iy~~~~~~~~ 127 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV----LDP--DP--CIYASLIGNY--IYYLHYDTQT 127 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE----EEC--SC--EEEEEEETTE--EEEEEESSSS
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE----eec--CC--ccEEEEeCCE--EEEEeecCCC
Confidence 4457899998887653 367777777664222 221 11 2367888884 44333 3
Q ss_pred CCcEEEEECCCCceeEEeecCCcCeEEEeecccCCccEEEEEcC-CCeEEEEEcCCCCceeeecCCCCceEEEEEccCCC
Q 001336 449 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGA 527 (1097)
Q Consensus 449 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 527 (1097)
+..|...++. |.....+..+.. ..+.+ +++.|+-.+. ...|..-+++......... .... ..+.|++.
T Consensus 128 ~~~Iy~~~~d-Gs~~~~lt~~~~----~~~~~--~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~ 196 (302)
T 3s25_A 128 ATSLYRIRID-GEEKKKIKNHYL----FTCNT--SDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDT 196 (302)
T ss_dssp CEEEEEEETT-SCCCEEEESSCC----CCSEE--ETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETT
T ss_pred CceEEEEECC-CCCeEEEeCCCc----eEeeE--ECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCC
Confidence 4567777765 444444544432 34433 3455655544 5777777776554443332 1222 34669999
Q ss_pred EEEEeeeCCCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCc
Q 001336 528 RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVN 594 (1097)
Q Consensus 528 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~ 594 (1097)
+|+...... ...|..-++..... ..+... .+ ..++|++..|+-+. ..+.|..-+++...
T Consensus 197 ~iy~t~~~~--~~~I~~~~ldG~~~-~~Lt~~---~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 197 NVYYMDVNR--DNAIVHVNINNPNP-VVLTEA---NI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp EEEEEEGGG--TTEEEEECSSSCCC-EECSCS---CE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred EEEEEEcCC--CcEEEEEECCCCCe-EEEeCC---Cc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 998765432 24677777765543 333321 23 34788888888764 34566666776443
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=89.69 E-value=29 Score=38.66 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=33.4
Q ss_pred ceEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---ceEEEEec---C----CCCCCcceEEEcCC
Q 001336 563 SVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNV---NLLASIDA---D----GGLQASPCIRFNKE 616 (1097)
Q Consensus 563 ~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~---~~~~~~~~---~----~~~~~v~~v~~s~~ 616 (1097)
..+.++|.|++. .++++...|.|++++.+.. +.+..+.. . ........|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 457899999995 5666677899999975432 12222211 0 01234567888885
No 350
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.68 E-value=10 Score=45.18 Aligned_cols=196 Identities=14% Similarity=0.048 Sum_probs=101.5
Q ss_pred cCCCcEEEEEEeCC----CcEEEEECCCCceeEEe-e-----cCCcC-eEEEeecccCCccEEEEEcCCC------eEEE
Q 001336 436 YPNKQLSVVTCGED----RVIKVWDAVTGTKQYIF-E-----GHESP-VYSICPHHKENIQFIFSTATDG------KIKA 498 (1097)
Q Consensus 436 ~d~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~-~-----~h~~~-v~~~~~~~~~~~~~l~s~~~dg------~i~i 498 (1097)
.++. +++.||.+ ..+.++|..+++....- . ..... -.+++.. ..++.+++.||.++ .+.+
T Consensus 396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~-~~~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI-SRNNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEE-TTTTEEEEECCBSSTTCBCCCCEE
T ss_pred ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEE-ccCCEEEEEcCCCCCCCccccEEE
Confidence 3455 66667643 46888998887654432 1 01111 1122221 11446777776543 4677
Q ss_pred EEcCCCCceeeecCCCC-ceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCeeeEEec-----CCCCcceEEEEEcCC
Q 001336 499 WLYDNLGSRVDYDAPGH-SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH-----GLGKRSVGVVQFDTT 572 (1097)
Q Consensus 499 wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-----~~~~~~v~~~~~~~~ 572 (1097)
||..+..-...-..... .-.+++...+++.++.||.+... .+.+||..+..-...-. .... ...++.+..+
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~-~~~a~v~~~~ 549 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSL-VSAGLEFDPV 549 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCC-BSCEEEEETT
T ss_pred EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCccc-ceeEEEEeCC
Confidence 77765432221111111 12233333488888888876544 69999998875433221 1111 2233455555
Q ss_pred -CCEEEEEeC--C-----CcEEEEECCCCce-----EEEEecCCCCCCc-ceEEEcCCCCEEEEEEC--------CCcEE
Q 001336 573 -KNRFLAAGD--E-----FMIKFWDMDNVNL-----LASIDADGGLQAS-PCIRFNKEGILLAVSTN--------DNGIK 630 (1097)
Q Consensus 573 -~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~~~~~~~v-~~v~~s~~~~~l~s~~~--------dg~i~ 630 (1097)
+..++.||. + ..+.+||+.+.+- ...+......... .+++...++.+++.|+. ...+.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 556667764 2 3588999988772 2222210001111 12333333677777764 34588
Q ss_pred EEEcCCC
Q 001336 631 ILANADG 637 (1097)
Q Consensus 631 iw~~~~~ 637 (1097)
+||..+.
T Consensus 630 ~yd~~t~ 636 (695)
T 2zwa_A 630 SLDPLSE 636 (695)
T ss_dssp EEETTTT
T ss_pred EEECCCC
Confidence 8888776
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=89.57 E-value=19 Score=37.12 Aligned_cols=183 Identities=10% Similarity=0.030 Sum_probs=98.2
Q ss_pred CeeEEEEccCCCEEEEEeCCeEEEEEcCCCceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEccc-ceEEEEe
Q 001336 808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-DEVKTKL 886 (1097)
Q Consensus 808 ~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~-~~~~~~l 886 (1097)
.|..++...+-..++ .||.|..|-....-.+.....-...|..++... ...+.-. ||.|+.|-... +++- ..
T Consensus 64 ~i~~ia~G~~hs~~l--~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg-~~ 136 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL--KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTT-VP 136 (282)
T ss_dssp CCCEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTS-CC
T ss_pred CEEEEEeCCCEEEEE--ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCC-CC
Confidence 466666544433333 388888886543222111111134677777764 3444445 99999998654 2211 11
Q ss_pred cccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccceeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEE
Q 001336 887 KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIY 966 (1097)
Q Consensus 887 ~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vw 966 (1097)
......|..++...+.. ++ -. ||.|..|-........ ++... ...|..++...+...+ . .++.|+.|
T Consensus 137 ~~~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gqlg-----~p~~~---~~~v~~i~~G~~hs~a-l-~~G~v~~w 203 (282)
T 3qhy_B 137 AEAQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQTT-----VPAEA---QSGVDDVAGGIFHSLA-L-KDGKVIAW 203 (282)
T ss_dssp GGGGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTTS-----CCGGG---GSSEEEEEECSSEEEE-E-ETTEEEEE
T ss_pred ccCCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCCC-----Cceec---CCCeEEEEecCCEEEE-E-ECCeEEEE
Confidence 11234577776654432 33 33 7999999766532221 11100 1346666665554443 4 69999999
Q ss_pred eCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCC
Q 001336 967 EAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL 1015 (1097)
Q Consensus 967 d~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~ 1015 (1097)
-......+..-. .-...|..++-..+-.++++ ||.|..|-....
T Consensus 204 G~n~~gqlg~p~--~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~ 247 (282)
T 3qhy_B 204 GDNRYKQTTVPT--EALSGVSAIASGEWYSLALK---NGKVIAWGSSRT 247 (282)
T ss_dssp ECCTTSTTCCCG--GGGSSCCEEEECSSCEEEEE---TTEEEEESTTCC
T ss_pred ECCCCCCCCCCc--ccCCCceEEEcCCCEEEEEE---CCEEEEecCCCC
Confidence 876543332111 11245777776544333333 999999976553
No 352
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=88.04 E-value=33 Score=37.25 Aligned_cols=261 Identities=11% Similarity=0.034 Sum_probs=120.1
Q ss_pred CCCeeEEEEcc--CCCEEEEEeCC----eEEEEEcCCCceeEEeC------C--------CCCCeEEEEEeCCC-CCEEE
Q 001336 806 EDAVPCFALSK--NDSYVMSASGG----KISLFNMMTFKTMTTFM------P--------PPPAATFLAFHPQD-NNIIA 864 (1097)
Q Consensus 806 ~~~v~~l~~s~--dg~~la~~sdg----~i~iwd~~~~~~~~~~~------~--------~~~~i~~l~~sp~~-~~~la 864 (1097)
...|.+|+++| ++.+.+.+..| .|...+ +.++.-..+. . ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45689999998 66666665554 343332 2222211111 1 11247789998633 44555
Q ss_pred EEECCCcEEEEEcccceEEEEec---c----------------cccCeEEEEEecC-CCEEEEEeCCCcEEEEEcCCCcc
Q 001336 865 IGMEDSSIQIYNVRVDEVKTKLK---G----------------HQKRITGLAFSNT-LNVLVSSGADSQLCVWSTDGWEK 924 (1097)
Q Consensus 865 ~g~~dg~v~vwd~~~~~~~~~l~---~----------------h~~~V~~l~~s~d-g~~l~s~~~Dg~i~iwd~~~~~~ 924 (1097)
.+...+.|...+ +.|+.-..+. . ....|.+|.+.|. ...|+.+..++.|...+ +.++
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~- 209 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGT- 209 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTS-
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCC-
Confidence 555555444432 2222111111 1 1235788999873 34444444444444332 2222
Q ss_pred cceeeEeec-C-CCCC-----CccCCeEEEEcCC-CcEEEEEeCCeEEEEeCCCcceeeeeeccCCC---CCEEEEEEec
Q 001336 925 QASKFLTIP-N-GRTA-----SALADTRVQFHLD-QTHLLAVHETQIAIYEAPKLECLKQFVPREAS---GPITHATYSC 993 (1097)
Q Consensus 925 ~~~~~~~~~-~-~~~~-----~~~~v~~l~~s~d-g~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~---~~v~~v~~s~ 993 (1097)
.+..+... . ...+ ....+..+.++|+ ...|.++..+.|...+- .++....+...-.. ..+.+++++|
T Consensus 210 -tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p 287 (394)
T 3b7f_A 210 -DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQ 287 (394)
T ss_dssp -SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred -CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECC
Confidence 11111110 0 0000 0124778899886 35555555666655442 23322222110001 3466788875
Q ss_pred -CCCEEEEEec-----------CCeEEEEeCCC-CceeeeeCCCCcCCCCCC-CceeeEEEEEcCCCCCEEEEEecCCcE
Q 001336 994 -DSQSIYVAFE-----------EGSVGVLTAST-LRLRCRINPTAYLPTNPS-LRVYPLVIAGNPTDPNQFALGLTDGGV 1059 (1097)
Q Consensus 994 -dg~~l~s~s~-----------Dg~v~vwd~~~-~~~~~~~~~~~~~~~~h~-~~v~~l~i~~~p~~~~~l~s~~~Dg~v 1059 (1097)
+...|..+.. ++...||.... |+....+. .-+|.... ..+...+++++|.++..|..++.++.|
T Consensus 288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 3333444432 33344555443 34433333 11232111 112112346777666666667666654
Q ss_pred EEEecCCCCcccCCCCC
Q 001336 1060 YIIEPLEAEGRWGTSPP 1076 (1097)
Q Consensus 1060 ~~W~~~~~~~~~~~~~~ 1076 (1097)
|.-......|....+
T Consensus 366 --~~S~D~G~tW~~~~~ 380 (394)
T 3b7f_A 366 --WASADEGEHWQCIAS 380 (394)
T ss_dssp --EEESSTTSBCEEEEC
T ss_pred --EEECCCCCCceEccc
Confidence 444555667876543
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=87.99 E-value=17 Score=39.01 Aligned_cols=173 Identities=11% Similarity=0.135 Sum_probs=96.2
Q ss_pred eEEEEEcCCC--ceeEEeCCC------CCCeEEEEEe---CC--C-CCEEEEEE-CCCcEEEEEcccceEEEEec-----
Q 001336 828 KISLFNMMTF--KTMTTFMPP------PPAATFLAFH---PQ--D-NNIIAIGM-EDSSIQIYNVRVDEVKTKLK----- 887 (1097)
Q Consensus 828 ~i~iwd~~~~--~~~~~~~~~------~~~i~~l~~s---p~--~-~~~la~g~-~dg~v~vwd~~~~~~~~~l~----- 887 (1097)
+|.+||+.+. +.++++.-. ...+..+++. |. . +.++.... ..+.|.|+|+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4667888887 777775432 3457788887 21 1 33444444 45689999999887554442
Q ss_pred ---------cc----ccCeEEEEEecC----CCEEEEEeCCCcEEEEEcCCCcccce---eeEeecCCCCCCccCCeEEE
Q 001336 888 ---------GH----QKRITGLAFSNT----LNVLVSSGADSQLCVWSTDGWEKQAS---KFLTIPNGRTASALADTRVQ 947 (1097)
Q Consensus 888 ---------~h----~~~V~~l~~s~d----g~~l~s~~~Dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~l~ 947 (1097)
|. ...|..|++||+ ++.|.-....+ -++|.+.+.-.... ..++.. +.......-..++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEE
Confidence 11 136788999998 77887766655 35555543211110 001110 0010001223466
Q ss_pred Ec-CCCcEEEE-EeCCeEEEEeCCCc----ceeeeeeccCCCCCEEEEEEecCCCEEEEEe
Q 001336 948 FH-LDQTHLLA-VHETQIAIYEAPKL----ECLKQFVPREASGPITHATYSCDSQSIYVAF 1002 (1097)
Q Consensus 948 ~s-~dg~~l~~-~~d~~v~vwd~~~~----~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s 1002 (1097)
++ .+|.+.++ ...+.|..|+..+. +....+.....-..+..+.+..+|.+.++++
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 75 67776666 37789999998751 1222222111223567777777776655554
No 354
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=87.83 E-value=50 Score=39.08 Aligned_cols=245 Identities=8% Similarity=0.028 Sum_probs=124.5
Q ss_pred EEE-EccCCCeEEEEEeCCC----eEEEEEcCCCceeeeeeeeEeeccccCccccccccCCCC-----CCeEEEEEccCC
Q 001336 324 SMD-FHPVQQILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT-----ASVNRVMWSPDG 393 (1097)
Q Consensus 324 ~v~-fspdg~~lla~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~spd~ 393 (1097)
.+. ++||+++++++-|..| .|+++|+.+++.+.. .|. + .... .....++|-.++
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-----------~----~~k~~~~~~~~~~~~~W~d~~ 196 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-----------P----ITNSGKLLEGKFTYPTWINKD 196 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-----------C----BCTTCCBCCEETCCEEEEETT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-----------c----ccccccccccccceeeEECCC
Confidence 445 8899998776655443 799999999876531 110 0 0000 011334776333
Q ss_pred CEEEEE----------ECCCEEEEEEccCCeeeeeeeeeecccCcE-EEEEEecCCCc---EEEEEEeCC---CcEEEEE
Q 001336 394 TLFGVA----------YSKHIVHLYTYHGGDELRNHLEIEAHVGSV-NDLAFSYPNKQ---LSVVTCGED---RVIKVWD 456 (1097)
Q Consensus 394 ~~las~----------~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V-~~l~~s~d~~~---~~l~s~s~d---~~i~iwd 456 (1097)
..+++. +....|+.|.+-+...-. ...+.+....+ .....+++++. ..+++.+.+ ..+.+.|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 275 (711)
T 4hvt_A 197 TIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILD 275 (711)
T ss_dssp EEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEE
T ss_pred EEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEc
Confidence 333331 123578888886653211 11244433333 34555677764 135554422 4566667
Q ss_pred CCC--CceeEEeecCCcCeEEEeecccCCccEEEEE----------cCCCeEEEEEcCCCC-------ceee-ecC-CCC
Q 001336 457 AVT--GTKQYIFEGHESPVYSICPHHKENIQFIFST----------ATDGKIKAWLYDNLG-------SRVD-YDA-PGH 515 (1097)
Q Consensus 457 ~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------~~dg~i~iwd~~~~~-------~~~~-~~~-~~~ 515 (1097)
... ++. ..+....... +..+ .++.+++.. ...+.|...++.... .... +.. ...
T Consensus 276 ~~~~~~~~-~~l~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (711)
T 4hvt_A 276 TKYKNLKL-QKINMPSDAT--LQGS--FKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANE 350 (711)
T ss_dssp CSSSSCEE-EECCSCTTCE--EEEE--ETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTE
T ss_pred CCCCCCcc-eEeecCCcce--Eeee--ECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCC
Confidence 553 432 2232222211 1111 122444422 145778888887631 1112 222 233
Q ss_pred ceEEEEEccCCCEEEEeeeCCCCCceEEEEeCCCCe-eeEE-ecCCCCcceEEEEEcCCCC-EEEEEe---CCCcEEEEE
Q 001336 516 SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA-VKRT-YHGLGKRSVGVVQFDTTKN-RFLAAG---DEFMIKFWD 589 (1097)
Q Consensus 516 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~-~l~~~~---~dg~i~iwd 589 (1097)
.+..+.+..+ ..+++... ++...|.++|+.++. .... +.......+......+++. ++++.+ .-+.++.+|
T Consensus 351 ~l~~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d 427 (711)
T 4hvt_A 351 VFNFISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWV 427 (711)
T ss_dssp EEEEEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred eEEEEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEe
Confidence 6778888865 44444443 345678899887664 2333 3322222566666667664 444443 346788888
Q ss_pred CCCCc
Q 001336 590 MDNVN 594 (1097)
Q Consensus 590 ~~~~~ 594 (1097)
+. ++
T Consensus 428 ~~-~~ 431 (711)
T 4hvt_A 428 KT-HE 431 (711)
T ss_dssp TT-SC
T ss_pred CC-Cc
Confidence 77 44
No 355
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=87.56 E-value=27 Score=41.42 Aligned_cols=243 Identities=11% Similarity=0.060 Sum_probs=120.8
Q ss_pred EEEE-EccCCCEEEEE-ECC----CEEEEEEccCCeeeeeeeeee-cccC------cEEEEEEecCCCcEEEEEE-----
Q 001336 385 NRVM-WSPDGTLFGVA-YSK----HIVHLYTYHGGDELRNHLEIE-AHVG------SVNDLAFSYPNKQLSVVTC----- 446 (1097)
Q Consensus 385 ~~v~-~spd~~~las~-~~d----g~i~iwd~~~~~~~~~~~~l~-~h~~------~V~~l~~s~d~~~~~l~s~----- 446 (1097)
..+. ++||+++++.+ +.. ..++++|+.+++.+... +. .-+. ....++|..++. ++++.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~--~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~ 207 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNG--FEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKN 207 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTC--SCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTT
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCC--cccccccccccccccceeeEECCCE--EEEEeCCCCC
Confidence 3444 88999988775 222 37999999998765321 21 0000 113458874444 34432
Q ss_pred -----eCCCcEEEEECCCCc--eeEEeecCCcCeE-EEeecccCCcc---EEEEEcCC---CeEEEEEcCCCCce-eeec
Q 001336 447 -----GEDRVIKVWDAVTGT--KQYIFEGHESPVY-SICPHHKENIQ---FIFSTATD---GKIKAWLYDNLGSR-VDYD 511 (1097)
Q Consensus 447 -----s~d~~i~iwd~~~~~--~~~~~~~h~~~v~-~~~~~~~~~~~---~l~s~~~d---g~i~iwd~~~~~~~-~~~~ 511 (1097)
+....|+.|.+-+.. -...+.+....+. ......++... .+++.+.+ ..+.+.+.+..... ..+.
T Consensus 208 ~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 287 (711)
T 4hvt_A 208 EITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKIN 287 (711)
T ss_dssp CBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECC
T ss_pred CcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEee
Confidence 123468888876542 2334544444432 22222333221 34544322 34555555432222 2332
Q ss_pred CCCCceEEEEEccCCCEEEEeeeCC------CCCceEEEEeCCCCe-------eeEE-ecCCCCcceEEEEEcCCCCEEE
Q 001336 512 APGHSSTMMAYSADGARLFSCGTNK------EGESYLVEWNESEGA-------VKRT-YHGLGKRSVGVVQFDTTKNRFL 577 (1097)
Q Consensus 512 ~~~~~v~~~~~s~~~~~l~~~~~~~------~~~~~i~~wd~~~~~-------~~~~-~~~~~~~~v~~~~~~~~~~~l~ 577 (1097)
.... ..+..+.++.+++....+- -..+.|...|+.++. ..+. +.......+..+.+..+ ..++
T Consensus 288 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 288 MPSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFL 364 (711)
T ss_dssp SCTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred cCCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence 2222 1233445665555432210 124568888877642 2222 44444446777888765 4666
Q ss_pred EEeCCC--cEEEEECCCCc-eEEE-EecCCCCCCcceEEEcCCCC-EEEEEEC---CCcEEEEEcC
Q 001336 578 AAGDEF--MIKFWDMDNVN-LLAS-IDADGGLQASPCIRFNKEGI-LLAVSTN---DNGIKILANA 635 (1097)
Q Consensus 578 ~~~~dg--~i~iwd~~~~~-~~~~-~~~~~~~~~v~~v~~s~~~~-~l~s~~~---dg~i~iw~~~ 635 (1097)
+...++ .|+++++.+++ .... +.... ...+.....++++. ++++.+. -+.+..++..
T Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 365 ATYDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 666666 46777776664 2333 33321 23455556666654 4444332 2456666654
No 356
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=87.48 E-value=42 Score=37.77 Aligned_cols=233 Identities=12% Similarity=0.088 Sum_probs=133.2
Q ss_pred EEEEECCCEEEEEEccCCeeeeeeeeeecc----------------------cCcEE--EEEEe---cCCCcEEEEEEe-
Q 001336 396 FGVAYSKHIVHLYTYHGGDELRNHLEIEAH----------------------VGSVN--DLAFS---YPNKQLSVVTCG- 447 (1097)
Q Consensus 396 las~~~dg~i~iwd~~~~~~~~~~~~l~~h----------------------~~~V~--~l~~s---~d~~~~~l~s~s- 447 (1097)
+.||+..|.|+|+-+.+++.++.+..+..- .+... .+++. .||+ +|..-.
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGr--ylfiNdk 150 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGK--YLFINDK 150 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEE--EEEEEET
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeE--EEEEecC
Confidence 567888999999999999887755433211 01111 23332 2566 454444
Q ss_pred CCCcEEEEECCCCceeEEeec-CCcCeEEEeecccCCccEEEEEcCC-------CeE---------EE---EEcCCCCce
Q 001336 448 EDRVIKVWDAVTGTKQYIFEG-HESPVYSICPHHKENIQFIFSTATD-------GKI---------KA---WLYDNLGSR 507 (1097)
Q Consensus 448 ~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~d-------g~i---------~i---wd~~~~~~~ 507 (1097)
....|-..++..-++-..+.- ....+..++|...++..+++.+++. |.. -+ .|.++.+..
T Consensus 151 an~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~ 230 (638)
T 3sbq_A 151 ANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMA 230 (638)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEE
T ss_pred CCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEE
Confidence 566788889888877665532 4556778877543555677776542 221 11 122222222
Q ss_pred eeecCCCCceEEEEEccCCCEEEEeeeCCC-----------CCceEEEE-------------------------eCCC--
Q 001336 508 VDYDAPGHSSTMMAYSADGARLFSCGTNKE-----------GESYLVEW-------------------------NESE-- 549 (1097)
Q Consensus 508 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-----------~~~~i~~w-------------------------d~~~-- 549 (1097)
..... ......+...++|++.++.+.+.. ..-.+.++ |.+.
T Consensus 231 ~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~ 309 (638)
T 3sbq_A 231 FQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKD 309 (638)
T ss_dssp EEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBT
T ss_pred EEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccc
Confidence 22221 123334556788888887773211 11123343 3332
Q ss_pred --Ce-eeEEecCCCCcceEEEEEcCCCCEEEEEe-CCCcEEEEECCCC------ce-------EEEEecCCCCCCcceEE
Q 001336 550 --GA-VKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNV------NL-------LASIDADGGLQASPCIR 612 (1097)
Q Consensus 550 --~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~------~~-------~~~~~~~~~~~~v~~v~ 612 (1097)
+. ..+.+.... ....+.++|||+++++++ .+.++.++|++.. +. ..... -+. .-...+
T Consensus 310 ~~~~~~~~~iP~pk--sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~Gl-GPlHt~ 384 (638)
T 3sbq_A 310 GKDSKFTRYVPVPK--NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--LGL-GPLHTT 384 (638)
T ss_dssp TBCCSSEEEEEESS--SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--CCS-CEEEEE
T ss_pred ccCCceEEEEeCCC--CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--CCC-cccEEE
Confidence 11 111111111 234578999999999988 7899999998742 11 22222 112 345789
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCC
Q 001336 613 FNKEGILLAVSTNDNGIKILANAD 636 (1097)
Q Consensus 613 ~s~~~~~l~s~~~dg~i~iw~~~~ 636 (1097)
|.++|....+.--|..|.-|++..
T Consensus 385 Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 385 FDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp ECSSSEEEEEETTTTEEEEEEHHH
T ss_pred ECCCCceEeeeeecceEEEEeccH
Confidence 999995555566899999999865
No 357
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=86.47 E-value=0.9 Score=41.98 Aligned_cols=78 Identities=15% Similarity=0.306 Sum_probs=58.6
Q ss_pred eeehhhHhhhhHHHhcCChhHHHHHHHhccccccccChHHHHHHHHhhccccccchhhhhccCC-------chHHHHHHH
Q 001336 35 IFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGD-------TKSARGIML 107 (1097)
Q Consensus 35 ~~~~i~~q~~~E~l~~~~~~~a~~~l~~~l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l~ 107 (1097)
++|-|+-+.|||||..|...+|-.||.+--.-++....+.+++|+.+....++.+++....++. .+.+=..|+
T Consensus 52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL~ 131 (156)
T 2nxp_A 52 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLK 131 (156)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHHH
Confidence 8999999999999999999999999986433334446788999998888877777666665655 233444666
Q ss_pred HHHHh
Q 001336 108 AELKK 112 (1097)
Q Consensus 108 ~~~~~ 112 (1097)
.-|++
T Consensus 132 ~fL~~ 136 (156)
T 2nxp_A 132 RHLQE 136 (156)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 66655
No 358
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=85.60 E-value=0.51 Score=42.51 Aligned_cols=77 Identities=12% Similarity=0.237 Sum_probs=56.3
Q ss_pred eeehhhHhhhhHHHhcCChhHHHHHHHhccccccccChHHHHHHHHhhccccccchhhhhccCC-------chHHHHHHH
Q 001336 35 IFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGD-------TKSARGIML 107 (1097)
Q Consensus 35 ~~~~i~~q~~~E~l~~~~~~~a~~~l~~~l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l~ 107 (1097)
++|-|+-+.||||+..|..++|-.||.+--.-++.. .+.+++|+.+....++.+++....++. .+.+=..|+
T Consensus 33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s~~lL~ 111 (138)
T 2j4b_A 33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLI 111 (138)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHHHHHH
Confidence 899999999999999999999999998754444455 888999998888777776665444433 244444666
Q ss_pred HHHHh
Q 001336 108 AELKK 112 (1097)
Q Consensus 108 ~~~~~ 112 (1097)
.-|++
T Consensus 112 ~fL~~ 116 (138)
T 2j4b_A 112 NFLEE 116 (138)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
No 359
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=85.12 E-value=36 Score=34.78 Aligned_cols=205 Identities=10% Similarity=0.083 Sum_probs=110.8
Q ss_pred CeEEEEEeCCCCCEEEEEECCCcEEE---EEcccceEEEEecccccCeEEEEEec--CCCEEEEEeCCCcEEEEEcCCCc
Q 001336 849 AATFLAFHPQDNNIIAIGMEDSSIQI---YNVRVDEVKTKLKGHQKRITGLAFSN--TLNVLVSSGADSQLCVWSTDGWE 923 (1097)
Q Consensus 849 ~i~~l~~sp~~~~~la~g~~dg~v~v---wd~~~~~~~~~l~~h~~~V~~l~~s~--dg~~l~s~~~Dg~i~iwd~~~~~ 923 (1097)
.+..+.... ....|+.-+.+|.++- |++..+.....+. ....|.++.. + +...++..+.+|.++...+..-.
T Consensus 25 ~~~~~~~~~-t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 25 PVVNILRVP-FTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CEEEEEEEE-TTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred eEEEEEEEC-CCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 344433333 3345555566775554 3333222111132 3455666644 4 46789999999999998876532
Q ss_pred --ccceeeEeecCCCCCCccCCeEEEEcCCCc-EEEEEeCCeEEEEeCCCcc-------eeeeeeccCCCCCEEEEEEec
Q 001336 924 --KQASKFLTIPNGRTASALADTRVQFHLDQT-HLLAVHETQIAIYEAPKLE-------CLKQFVPREASGPITHATYSC 993 (1097)
Q Consensus 924 --~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~~~~d~~v~vwd~~~~~-------~~~~~~~~~h~~~v~~v~~s~ 993 (1097)
......+.+.++ +.+..+....... .++.+..|.+..+....-. -+..+.... ...|.++...+
T Consensus 102 ~~~~G~~~i~lkeg-----D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~ 175 (276)
T 3no0_A 102 YKAQGMPIIKLTEG-----DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWN 175 (276)
T ss_dssp TCSTTEECSCCCTT-----CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEES
T ss_pred hhcCCeEEEecCCC-----CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeC
Confidence 011112223332 3355555444444 4445788888777654211 111122212 46777777777
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeeeeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEE--EecCC
Q 001336 994 DSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYI--IEPLE 1066 (1097)
Q Consensus 994 dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~--W~~~~ 1066 (1097)
++..|+..+..|.++...+.......+-....... .-.+.+..+.+. ++.+.++..+.+|.+.. +++++
T Consensus 176 ~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~---~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 176 GEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPI---KEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp SCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEE---SSEEEEEEEETTSCEEEEEEEGGG
T ss_pred CCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEe---CCCCEEEEEcCCCeEEEeeeCHHH
Confidence 77889999999999999876554433321111000 112344443222 23457777888888887 77654
No 360
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=84.58 E-value=47 Score=35.64 Aligned_cols=165 Identities=10% Similarity=0.063 Sum_probs=90.2
Q ss_pred cEEEEECCCC--ceeEEeec------CCcCeEEEeec-ccC----CccEE-EEEcCCCeEEEEEcCCCCceeeec----C
Q 001336 451 VIKVWDAVTG--TKQYIFEG------HESPVYSICPH-HKE----NIQFI-FSTATDGKIKAWLYDNLGSRVDYD----A 512 (1097)
Q Consensus 451 ~i~iwd~~~~--~~~~~~~~------h~~~v~~~~~~-~~~----~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~----~ 512 (1097)
.|.+||+.++ +.++++.- ....+..+++. ..+ ++.++ ++=+..+.|.++|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5677888888 77776542 23457778775 211 12343 444457889999988765433221 1
Q ss_pred --------C------CCceEEEEEccC----CCEEEEeeeCCCCCceEEEEeCC-----CC---eeeEEecCCCC--cce
Q 001336 513 --------P------GHSSTMMAYSAD----GARLFSCGTNKEGESYLVEWNES-----EG---AVKRTYHGLGK--RSV 564 (1097)
Q Consensus 513 --------~------~~~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~wd~~-----~~---~~~~~~~~~~~--~~v 564 (1097)
. ...+..++++|+ ++.|......+. ++|.+. .. ..++.+ +... ..-
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-----~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~ 277 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-----KVYSVNTKELKQKGGKLNPELL-GNRGKYNDA 277 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-----EEEEEEHHHHSSTTCCCCCEEE-EECCTTCCE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-----cEEEEEHHHhhCcchhhceEEe-eecCCCCCc
Confidence 0 126788999998 788877765432 233322 11 112211 1111 123
Q ss_pred EEEEEc-CCCCEEEEEeCCCcEEEEECCCC----ceEEEEecCCCCCCcceEEEcCCCCEEE
Q 001336 565 GVVQFD-TTKNRFLAAGDEFMIKFWDMDNV----NLLASIDADGGLQASPCIRFNKEGILLA 621 (1097)
Q Consensus 565 ~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 621 (1097)
...++. .+|..+++--+...|..|+..+. +....+...........+.+..+|.+.+
T Consensus 278 ~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv 339 (381)
T 3q6k_A 278 IALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWF 339 (381)
T ss_dssp EEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEE
T ss_pred ceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEE
Confidence 345665 56666666668899999998751 2233333222334455666655554333
No 361
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=79.71 E-value=0.59 Score=42.55 Aligned_cols=77 Identities=17% Similarity=0.276 Sum_probs=51.4
Q ss_pred eeehhhHhhhhHHHhcCChhHHHHHHHhccccccccChHHHHHHHHhhccccccchhhhhccCC-------chHHHHHHH
Q 001336 35 IFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGD-------TKSARGIML 107 (1097)
Q Consensus 35 ~~~~i~~q~~~E~l~~~~~~~a~~~l~~~l~~l~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l~ 107 (1097)
++|-|+-+.||||+..| .++|-.||.+--.-+.....+.+++|+.+....++.+++....++. .+.+=..|+
T Consensus 35 lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s~~lL~ 113 (148)
T 2j49_A 35 IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLL 113 (148)
T ss_dssp HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHHHHHH
Confidence 89999999999999999 9999999876332222334566777777777666665555444443 233334555
Q ss_pred HHHHh
Q 001336 108 AELKK 112 (1097)
Q Consensus 108 ~~~~~ 112 (1097)
.-|++
T Consensus 114 ~fL~~ 118 (148)
T 2j49_A 114 YFLNE 118 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
No 362
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=76.18 E-value=80 Score=33.09 Aligned_cols=157 Identities=8% Similarity=0.040 Sum_probs=90.9
Q ss_pred CCCeeEEEEcc---CCCEEEEEe-CCeEEEEEcCCCce-------eEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEE
Q 001336 806 EDAVPCFALSK---NDSYVMSAS-GGKISLFNMMTFKT-------MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQI 874 (1097)
Q Consensus 806 ~~~v~~l~~s~---dg~~la~~s-dg~i~iwd~~~~~~-------~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~v 874 (1097)
...|.++..-+ +..+++..+ +|.++.-.+..... ...++. ...+..+.... +...|+..+..|.+..
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIR 171 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEE
Confidence 45555554333 567888887 89999887654322 122332 34555555555 5567888889999888
Q ss_pred EEcc--c---------ceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccc-----eeeEeecCCCCC
Q 001336 875 YNVR--V---------DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQA-----SKFLTIPNGRTA 938 (1097)
Q Consensus 875 wd~~--~---------~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~ 938 (1097)
+... . |.....+. ....|.++...+++..|+..+..|.++.-.+..-.... ...+...+..
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~-- 248 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRR-- 248 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTT--
T ss_pred EECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCC--
Confidence 8876 3 11112222 23557777776677789999999999988765433211 1112111101
Q ss_pred CccCCeEEEE-cCCCcEEEEEeCCeEEEEeCC
Q 001336 939 SALADTRVQF-HLDQTHLLAVHETQIAIYEAP 969 (1097)
Q Consensus 939 ~~~~v~~l~~-s~dg~~l~~~~d~~v~vwd~~ 969 (1097)
+.+..+.. ..+...++++.+|.+.-++.+
T Consensus 249 --d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 249 --GRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp --CSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred --CeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 22333333 344455555777777777664
No 363
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=69.35 E-value=1.3e+02 Score=32.43 Aligned_cols=237 Identities=9% Similarity=0.025 Sum_probs=106.8
Q ss_pred CCCeEEEEEcc--CCCEEEEEECCCE--EEEEEc-cCCeeeeeeee---eec--------ccCcEEEEEEecC--CCcEE
Q 001336 381 TASVNRVMWSP--DGTLFGVAYSKHI--VHLYTY-HGGDELRNHLE---IEA--------HVGSVNDLAFSYP--NKQLS 442 (1097)
Q Consensus 381 ~~~V~~v~~sp--d~~~las~~~dg~--i~iwd~-~~~~~~~~~~~---l~~--------h~~~V~~l~~s~d--~~~~~ 442 (1097)
...|.+|++.| ++.+.|.+ ..|. -.||.. ..|+....... +.. +...|.++++.|. .. .
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~--~ 130 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG--T 130 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT--C
T ss_pred CCceEEEEECCCCCCeEEEEe-cCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC--E
Confidence 35799999998 45555444 3430 123333 33332222111 111 1235888999873 34 3
Q ss_pred EEEEeCCCcEEEEECCCCceeEEeec-------------------CCcCeEEEeecccCCccEEEEEcCCCeEEEEEcCC
Q 001336 443 VVTCGEDRVIKVWDAVTGTKQYIFEG-------------------HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 503 (1097)
Q Consensus 443 l~s~s~d~~i~iwd~~~~~~~~~~~~-------------------h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 503 (1097)
+..++..+.|...+ ..|+.-..+.. ....+.+|.+.+...+. |+.+..++.| |....
T Consensus 131 l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~-l~vg~~~ggl--~~s~D 206 (394)
T 3b7f_A 131 WYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKH-LYIGMSSGGV--FESTD 206 (394)
T ss_dssp EEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTC-EEEEEETBEE--EEESS
T ss_pred EEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCE-EEEEECCCCE--EEECC
Confidence 55555556555543 33333222211 12347788876533333 4444333433 32233
Q ss_pred CCceeeecCC--------------CCceEEEEEccC-CCEEEEeeeCCCCCceEEEEeCCCCeeeEEecC-CCC---cce
Q 001336 504 LGSRVDYDAP--------------GHSSTMMAYSAD-GARLFSCGTNKEGESYLVEWNESEGAVKRTYHG-LGK---RSV 564 (1097)
Q Consensus 504 ~~~~~~~~~~--------------~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-~~~---~~v 564 (1097)
.......... ...+.++.+.|+ ...|.++... .|...+-. ++.-..+.. ... ..+
T Consensus 207 gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~-----gl~~s~D~-G~tW~~~~~~l~~~~~~~~ 280 (394)
T 3b7f_A 207 AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC-----GIYRMDRR-EGVWKRIGDAMPREVGDIG 280 (394)
T ss_dssp TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT-----EEEEEETT-TTEEECGGGGSCTTTCSCE
T ss_pred CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC-----eEEEeCCC-CCcceECCCCCCCCCccce
Confidence 2222221110 124788999886 3455555421 24444322 222222221 111 235
Q ss_pred EEEEEcCC-CCEEEEEeC-----------CCcEEEEECCC-CceEEEEecC-CCCC-----CcceEEEcCC-CCEEEEEE
Q 001336 565 GVVQFDTT-KNRFLAAGD-----------EFMIKFWDMDN-VNLLASIDAD-GGLQ-----ASPCIRFNKE-GILLAVST 624 (1097)
Q Consensus 565 ~~~~~~~~-~~~l~~~~~-----------dg~i~iwd~~~-~~~~~~~~~~-~~~~-----~v~~v~~s~~-~~~l~s~~ 624 (1097)
..+.+.|. ...++++.. ++...+|...+ |+....+... .... ....++++|. ...|+.++
T Consensus 281 ~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~ 360 (394)
T 3b7f_A 281 FPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGT 360 (394)
T ss_dssp EEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEEC
T ss_pred EEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEe
Confidence 66778763 344555432 33344554443 4544444311 0000 1236888874 34566666
Q ss_pred CCCcEE
Q 001336 625 NDNGIK 630 (1097)
Q Consensus 625 ~dg~i~ 630 (1097)
.++.|.
T Consensus 361 ~~g~l~ 366 (394)
T 3b7f_A 361 TGGEIW 366 (394)
T ss_dssp TTSCEE
T ss_pred CCCeEE
Confidence 555543
No 364
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=69.03 E-value=27 Score=43.19 Aligned_cols=41 Identities=15% Similarity=0.043 Sum_probs=35.3
Q ss_pred CCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCC
Q 001336 983 SGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINP 1023 (1097)
Q Consensus 983 ~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~ 1023 (1097)
...+.+++..+|..++++.+.|+++|+|++.+++++.....
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 34677888889999999999999999999999998876553
No 365
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=65.89 E-value=1.5e+02 Score=31.90 Aligned_cols=203 Identities=8% Similarity=-0.002 Sum_probs=105.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCcEEEEEccc-c----------eEEEEeccc-ccCeEEEEEecCCCEEEEEeCCCcEEE
Q 001336 849 AATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-D----------EVKTKLKGH-QKRITGLAFSNTLNVLVSSGADSQLCV 916 (1097)
Q Consensus 849 ~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~-~----------~~~~~l~~h-~~~V~~l~~s~dg~~l~s~~~Dg~i~i 916 (1097)
.+..++++. +....+.-..||.|+.|-... + .....+..- ...|..++.. ..+.+....||.|+.
T Consensus 106 ~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 106 FIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYT 182 (389)
T ss_dssp CEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred ceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEE
Confidence 456677776 677777778899999996542 1 112222221 1256666654 345555678999999
Q ss_pred EEcCCCccc-------ceeeEeecCCCCCCccCCeEEEEcC-CCcEEEEEeCCeEEEEeCCCccee----------eeee
Q 001336 917 WSTDGWEKQ-------ASKFLTIPNGRTASALADTRVQFHL-DQTHLLAVHETQIAIYEAPKLECL----------KQFV 978 (1097)
Q Consensus 917 wd~~~~~~~-------~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~l~~~~d~~v~vwd~~~~~~~----------~~~~ 978 (1097)
|-....... ......+.... ...+..++... +...++...++.|+.|-......+ ....
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v~~~~---~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v 259 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLVEALQ---GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKI 259 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGT---TSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEEC
T ss_pred eCCCCCCCcCCCCCcccccceEecccC---CCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEe
Confidence 975431110 01111111100 12355566554 344556678999999976532111 1111
Q ss_pred ccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceee------eeCCCCcCCCCCCCceeeEEEEEcCCCCCEEEE
Q 001336 979 PREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRC------RINPTAYLPTNPSLRVYPLVIAGNPTDPNQFAL 1052 (1097)
Q Consensus 979 ~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~------~~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s 1052 (1097)
..-....|..++...+ .-+....||.|..|-....-++. ... +..++.-....|..++. .....+.
T Consensus 260 ~~~~~~~v~~v~~G~~--hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~-P~~v~~l~~~~v~~ia~-----G~~h~~a 331 (389)
T 3kci_A 260 DSLTGLGVVKVECGSQ--FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR-PRQVQGLQGKKVIAIAT-----GSLHCVC 331 (389)
T ss_dssp GGGTTSCEEEEEEETT--EEEEEETTSCEEEEECCGGGTTCSSSCCCEEE-EEECGGGTTCCEEEEEE-----CSSEEEE
T ss_pred cccCCCcEEEEeCCCC--EEEEEeCCCeEEEEeCCCCCCCCCCCCccccC-CeEeccCCCCCEEEEEe-----ccCeEEE
Confidence 0011234666665433 44445678999999754321110 000 00000001123444422 3456677
Q ss_pred EecCCcEEEEecC
Q 001336 1053 GLTDGGVYIIEPL 1065 (1097)
Q Consensus 1053 ~~~Dg~v~~W~~~ 1065 (1097)
...||.|+.|=..
T Consensus 332 l~~~G~v~~wG~n 344 (389)
T 3kci_A 332 CTEDGEVYTWGDN 344 (389)
T ss_dssp EETTCCEEEEECC
T ss_pred ECCCCCEEEeeCC
Confidence 7899999999765
No 366
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=65.25 E-value=1.2e+02 Score=30.72 Aligned_cols=201 Identities=5% Similarity=0.015 Sum_probs=110.9
Q ss_pred CeeEE-EEccCCCEEEEEeCCeEE---EEEcCCCceeEEeCCCCCCeEEEEEeCC-CCCEEEEEECCCcEEEEEcccc--
Q 001336 808 AVPCF-ALSKNDSYVMSASGGKIS---LFNMMTFKTMTTFMPPPPAATFLAFHPQ-DNNIIAIGMEDSSIQIYNVRVD-- 880 (1097)
Q Consensus 808 ~v~~l-~~s~dg~~la~~sdg~i~---iwd~~~~~~~~~~~~~~~~i~~l~~sp~-~~~~la~g~~dg~v~vwd~~~~-- 880 (1097)
.+..+ ..+....+++..+.|.++ +|++..+.....+. ....|..+.. ++ +..+++..+.+|.++-..+..-
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 34443 344444555555577654 45544322111132 3455666644 42 3578999999999999987653
Q ss_pred ----eEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcc-----cceeeEeecCCCCCCccCCeEEEEcCC
Q 001336 881 ----EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEK-----QASKFLTIPNGRTASALADTRVQFHLD 951 (1097)
Q Consensus 881 ----~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~l~~s~d 951 (1097)
.....++. .+.+..+........++..+..|.+..+....-.. .....+.+..+ ..|..+...++
T Consensus 103 ~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~-----d~vv~~~~~~~ 176 (276)
T 3no0_A 103 KAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN-----DETSGLRIWNG 176 (276)
T ss_dssp CSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-----CCEEEEEEESS
T ss_pred hcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC-----CEEEEEEEeCC
Confidence 22222332 34566666665666888888999888887543111 11122222222 33555544444
Q ss_pred Cc-EEEEEeCCeEEEEeCCCc-------ceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEE--EeCCCCceee
Q 001336 952 QT-HLLAVHETQIAIYEAPKL-------ECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGV--LTASTLRLRC 1019 (1097)
Q Consensus 952 g~-~l~~~~d~~v~vwd~~~~-------~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~v--wd~~~~~~~~ 1019 (1097)
+. +++++..|.++...++.. +-+..+. -.+.+..+....++..++..+.+|.+.. +++..-....
T Consensus 177 ~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~---~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i~~~~ 251 (276)
T 3no0_A 177 EPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSG---TKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDIPLST 251 (276)
T ss_dssp CSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCC---SSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGSCBCC
T ss_pred CCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEc---CCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHCCCcC
Confidence 44 444477788887776432 1222221 1345666555444556777788888887 8876554443
No 367
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=64.66 E-value=1.4e+02 Score=31.19 Aligned_cols=168 Identities=12% Similarity=0.065 Sum_probs=96.7
Q ss_pred CCCeEEEEEeCC--CCCEEEEEECCCcEEEEEcccc-------eEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001336 847 PPAATFLAFHPQ--DNNIIAIGMEDSSIQIYNVRVD-------EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917 (1097)
Q Consensus 847 ~~~i~~l~~sp~--~~~~la~g~~dg~v~vwd~~~~-------~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iw 917 (1097)
...|..+..-++ +..++++.+.+|.++--.+..- .....++. .+.+..+........|+..+..|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 345655544331 4679999999999999887652 22223443 3556666666666778888899988888
Q ss_pred EcC--CC----cc-cceeeEeecCCCCCCccCCeEEEEcCCCcEEEE-EeCCeEEEEeCCCcc-------eeeeeeccCC
Q 001336 918 STD--GW----EK-QASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLE-------CLKQFVPREA 982 (1097)
Q Consensus 918 d~~--~~----~~-~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-~~d~~v~vwd~~~~~-------~~~~~~~~~h 982 (1097)
... .- +. .....+.+..+ ..|.++...+++.+|+. +..|.++.-.+.... -+..+....-
T Consensus 173 ~~~~~eip~~gr~a~Gv~~i~L~~~-----d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~ 247 (327)
T 3uc1_A 173 SATDEALRPMGRATSGVQGMRFNID-----DRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR 247 (327)
T ss_dssp ECCTTTSCCCCTTSBCEESSCCCTT-----CCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT
T ss_pred ECcccccCcCCcCCCCeeeecCCCC-----CEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC
Confidence 776 21 11 11112222222 34666655555544444 778888877654322 1222221111
Q ss_pred CCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeee
Q 001336 983 SGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCR 1020 (1097)
Q Consensus 983 ~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~ 1020 (1097)
.+.+..+....+...++..+.+|.+.-+++..-....+
T Consensus 248 ~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR 285 (327)
T 3uc1_A 248 RGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGR 285 (327)
T ss_dssp TCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCT
T ss_pred CCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCC
Confidence 34466665555556677778888888888766544433
No 368
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=64.28 E-value=1.9e+02 Score=32.55 Aligned_cols=179 Identities=12% Similarity=0.129 Sum_probs=94.1
Q ss_pred ccCcEEEEEEecCCCcEEEEEEeCCCc----------------------------EEEEECCCCceeEEeecC--CcC--
Q 001336 425 HVGSVNDLAFSYPNKQLSVVTCGEDRV----------------------------IKVWDAVTGTKQYIFEGH--ESP-- 472 (1097)
Q Consensus 425 h~~~V~~l~~s~d~~~~~l~s~s~d~~----------------------------i~iwd~~~~~~~~~~~~h--~~~-- 472 (1097)
|...+....|.-||+. -++....+++ |.++|=.+|+.+.++.-. .+.
T Consensus 177 ~yt~~~V~DlDGDGka-EIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~ 255 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKA-EVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVS 255 (591)
T ss_dssp TSCCCEEECSSSSSSC-EEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGG
T ss_pred ccCceeEEEcCCCCcc-eEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCccc
Confidence 6666777788888876 4555555554 788888888887765421 111
Q ss_pred -------------eEEEeecccCCccEEEEEc---CCCeEEEEEcCCCCce--eeecCC-----------CCceEEEEEc
Q 001336 473 -------------VYSICPHHKENIQFIFSTA---TDGKIKAWLYDNLGSR--VDYDAP-----------GHSSTMMAYS 523 (1097)
Q Consensus 473 -------------v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~--~~~~~~-----------~~~v~~~~~s 523 (1097)
..++++. +.+...++.+- ....|..||++..+.. ..+... .+...-..+.
T Consensus 256 ~WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVD 334 (591)
T 2zux_A 256 DWGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVD 334 (591)
T ss_dssp GGTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCS
T ss_pred ccccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCC
Confidence 1233321 22222333332 1234777777655432 222221 1233444445
Q ss_pred cCCCE-EEEeeeCCCCCceEEEEeCCCCeeeEEec-CCCCcceEEEEEcCCC--CEEEEEeCCC----cEEEEECCCCce
Q 001336 524 ADGAR-LFSCGTNKEGESYLVEWNESEGAVKRTYH-GLGKRSVGVVQFDTTK--NRFLAAGDEF----MIKFWDMDNVNL 595 (1097)
Q Consensus 524 ~~~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~--~~l~~~~~dg----~i~iwd~~~~~~ 595 (1097)
-||+- |+.++. ++| ..|+.+.... +|.. .+....|.|+. ..++.+.+++ -..+.|..+|+.
T Consensus 335 gDG~dEIv~Gs~---------~iD-~dG~~L~st~~gHGD-a~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~v 403 (591)
T 2zux_A 335 GDGKDEIIFGSM---------AVD-HDGKGMYSTGLGHGD-ALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKI 403 (591)
T ss_dssp SSSSCEEEETTE---------EEC-TTSCEEEECSCCCCS-CEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCE
T ss_pred CCCCceEEEeee---------EEC-CCCCEeeeCCCCCCC-eeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcE
Confidence 55543 222221 223 2344444333 4443 66777788874 4677766642 355689999999
Q ss_pred EEEEecCCCCCCcceEEEcCC
Q 001336 596 LASIDADGGLQASPCIRFNKE 616 (1097)
Q Consensus 596 ~~~~~~~~~~~~v~~v~~s~~ 616 (1097)
+................|.|+
T Consensus 404 lw~~~~~~d~Gr~~~~Didp~ 424 (591)
T 2zux_A 404 LWGVYAGKDVGRGMAADIDPR 424 (591)
T ss_dssp EEEECCSSCCCCEEEECCCTT
T ss_pred EEEcCCCCCCCceeEEecCCC
Confidence 988765433344444445554
No 369
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=59.35 E-value=1.7e+02 Score=30.45 Aligned_cols=239 Identities=9% Similarity=0.069 Sum_probs=120.8
Q ss_pred cCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCCccccccCCCCCCCCCeeEEEEc-cCCCEEEEEeCC
Q 001336 749 NSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALS-KNDSYVMSASGG 827 (1097)
Q Consensus 749 pdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~la~~sdg 827 (1097)
|+...+++.+.+|.|+--.+.. |... + .....+. ....+..+... ....+++..+.|
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~-----------------~~~~-~-~~~~~lk---e~D~l~~~~~~~t~d~ll~fT~~G 60 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRS-----------------YAAS-N-GQDFAMK---DTDRLLAMLEMNTKDVLLLFTNKG 60 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHH-----------------HHHT-T-TCCCCCC---TTCCEEEEEEEETTSEEEEEETTS
T ss_pred cCCcEEEEEeCCCEEEEeEHHH-----------------hhhc-C-ccccccC---CCCEEEEEEEECCCCEEEEEECCC
Confidence 4566788889999888643220 0000 0 0001111 23444444444 444444445577
Q ss_pred eEEEEE---cCC------CceeEE---eCCCCCCeEEEEEeCC--CCCEEEEEECCCcEEEEEccc--------ceEEEE
Q 001336 828 KISLFN---MMT------FKTMTT---FMPPPPAATFLAFHPQ--DNNIIAIGMEDSSIQIYNVRV--------DEVKTK 885 (1097)
Q Consensus 828 ~i~iwd---~~~------~~~~~~---~~~~~~~i~~l~~sp~--~~~~la~g~~dg~v~vwd~~~--------~~~~~~ 885 (1097)
.+.-+. +.. |..+.. +. ....|..+..-++ ++.+++.++.+|.++--.+.. |.....
T Consensus 61 r~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~ 139 (323)
T 1wp5_A 61 NYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGIN 139 (323)
T ss_dssp EEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSC
T ss_pred EEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEE
Confidence 755443 322 222211 22 2334665543331 256889999999999988753 222223
Q ss_pred ecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCCc-----ccceeeEeecCCCCCCccCCeEEEEcCCCc--EEEEE
Q 001336 886 LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE-----KQASKFLTIPNGRTASALADTRVQFHLDQT--HLLAV 958 (1097)
Q Consensus 886 l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~--~l~~~ 958 (1097)
+... +.+..+....+...|+..+.+|.+..+....-. ....+.+.+..+ ..|..+..-+++. +++++
T Consensus 140 l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~-----d~Vv~~~~~~~~~~~ll~vt 213 (323)
T 1wp5_A 140 LKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEG-----DYIVSGQLITSKDESIVVAT 213 (323)
T ss_dssp CCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTT-----CCEEEEEEECCTTCEEEEEE
T ss_pred eCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCC-----CEEEEEEEEcCCCcEEEEEE
Confidence 3322 566666666566678888899998888765311 111222223222 3355554433333 44456
Q ss_pred eCCeEEEEeCCCc-------ceeeeee-ccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCc
Q 001336 959 HETQIAIYEAPKL-------ECLKQFV-PREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLR 1016 (1097)
Q Consensus 959 ~d~~v~vwd~~~~-------~~~~~~~-~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~ 1016 (1097)
..|..+..++... +-+..+. .......+..+....++..++..+..|.+....+..-.
T Consensus 214 ~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~i~ 279 (323)
T 1wp5_A 214 QRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGDIR 279 (323)
T ss_dssp TTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGGSC
T ss_pred CCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhhcC
Confidence 7777776666431 1111121 11112245544444444556666777777666665543
No 370
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=59.00 E-value=1.7e+02 Score=30.29 Aligned_cols=239 Identities=9% Similarity=0.049 Sum_probs=129.1
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCCceeE---------EeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEE--
Q 001336 816 KNDSYVMSAS-GGKISLFNMMTFKTMT---------TFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK-- 883 (1097)
Q Consensus 816 ~dg~~la~~s-dg~i~iwd~~~~~~~~---------~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~-- 883 (1097)
++..++++.+ +|.|+--.+...+..+ .++ ....+..+.... ....++..+..|.++-+....-...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 3555667777 8888877665432211 122 223444544444 4567778888998887776431110
Q ss_pred ----------EEecccccCeEEEEEec---CCCEEEEEeCCCcEEEEEcCCCccc---ceeeEeecCCCCCCccCCeEEE
Q 001336 884 ----------TKLKGHQKRITGLAFSN---TLNVLVSSGADSQLCVWSTDGWEKQ---ASKFLTIPNGRTASALADTRVQ 947 (1097)
Q Consensus 884 ----------~~l~~h~~~V~~l~~s~---dg~~l~s~~~Dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~l~ 947 (1097)
-.+. ....|.++...+ +...|+..+.+|.++.-.+..-... ....+.+.++ +.+..+.
T Consensus 84 ~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~-----d~lv~~~ 157 (312)
T 1suu_A 84 ASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDK-----DFVTSAE 157 (312)
T ss_dssp ----CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTT-----CCEEEEE
T ss_pred cCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCC-----CEEEEEE
Confidence 0112 123455554433 4677888999999998887543211 1122222222 3355554
Q ss_pred E-cCCCcEEEEEeCCeEEEEeCCCc-------ceeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceee
Q 001336 948 F-HLDQTHLLAVHETQIAIYEAPKL-------ECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRC 1019 (1097)
Q Consensus 948 ~-s~dg~~l~~~~d~~v~vwd~~~~-------~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~ 1019 (1097)
. .++..+++++.+|.+..+..+.- .-+..+.... ...|.++....++..|++.+..|..+..++.......
T Consensus 158 ~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~ 236 (312)
T 1suu_A 158 IVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELK 236 (312)
T ss_dssp EECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCC
T ss_pred EeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccC
Confidence 4 44445556688898888877531 1222222222 4567777766667778889999999999987654433
Q ss_pred eeCCCCcCCC---CCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCC
Q 001336 1020 RINPTAYLPT---NPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1066 (1097)
Q Consensus 1020 ~~~~~~~~~~---~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~ 1066 (1097)
+-..+..+.. .-.+.+..+. .+. +.+.++..+..|.+.-..+.+
T Consensus 237 R~~kGv~~~~~~k~~~~~lv~~~-~~~--~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 237 RGATGYTSYKKSDKKAGSVVDAI-AVS--EDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp TTCCCEECSCTTCTTTCSEEEEE-EEC--TTCEEEEEETTCEEEEEEGGG
T ss_pred CCCCCEEeeEccCCCCCeEEEEE-EeC--CCCEEEEEeCCCeEEEEEccc
Confidence 3221111111 1123333321 232 345666677777555445543
No 371
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=57.03 E-value=15 Score=38.15 Aligned_cols=108 Identities=14% Similarity=0.222 Sum_probs=56.9
Q ss_pred hhhhhhhcccChHHHHHHhccccccCCccccceeeehhhHhhhhHHHhcCChhHHHHHHHhc-cccccccChHHHHHHHH
Q 001336 2 RYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKD-LKVFSAFNEDLFKEITQ 80 (1097)
Q Consensus 2 ~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~E~l~~~~~~~a~~~l~~~-l~~l~~~~~~~~~~l~~ 80 (1097)
.+|++.|.+|++=||.+.+..+ |.-++.++++.+|+.+|..- +.-|+.-+...--.|+.
T Consensus 18 ~rl~~~I~~G~yYEAhQ~~Rtl--------------------~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 18 QRFENKIKAGDYYEAHQTLRTI--------------------ANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH--------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhccChHHHHHHHHHH--------------------HHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHH
Confidence 5789999999999999988765 11233344555555555543 22122223444455555
Q ss_pred hhccccccchhhhhccCCchHHHHHHHHHHHhhcccCcCcccccCCCCCchhHHHHHHhhchhhhhhh
Q 001336 81 LLTLENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLNWQHQL 148 (1097)
Q Consensus 81 ll~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~i~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~ 148 (1097)
++.-- .... ++.-..+++.+|. +|-+.+|++. + ...++++.|++|=...
T Consensus 78 llvev-~~~~----~~~~~~~~~~rl~-~l~~~~p~~~------------~-~r~~fi~~ai~WS~~~ 126 (312)
T 2wpv_A 78 YLLEV-YDLA----EVKVDDISVARLV-RLIAELDPSE------------P-NLKDVITGMNNWSIKF 126 (312)
T ss_dssp HHHHH-HHHT----TCCCSHHHHHHHH-HHHTTCCTTC------------T-THHHHHHHHHHHHHHT
T ss_pred HHHHH-HHHc----CCCCCHHHHHHHH-HHHHHCCCCC------------c-hHHHHHHHHHHHHhhc
Confidence 54421 1000 1111344555655 3444445422 1 2477778888886654
No 372
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=56.99 E-value=2.6e+02 Score=31.69 Aligned_cols=68 Identities=9% Similarity=0.096 Sum_probs=39.8
Q ss_pred CCeeeEEecCCCCcceEEEEEcCC--CCEEEEEeCC----CcEEEEECCCCceEEEEecCCCCCCcceEEEcCC
Q 001336 549 EGAVKRTYHGLGKRSVGVVQFDTT--KNRFLAAGDE----FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 616 (1097)
Q Consensus 549 ~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 616 (1097)
.|+.+......+...+....|.|+ |-.++.+.++ .-..+.|..+|+.+................|.|+
T Consensus 355 dG~~L~st~~gHGDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~~D~Gr~~~~Didp~ 428 (620)
T 2zuy_A 355 DGTGLYSTGLGHGDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAGTDVGRGMAAHIDPS 428 (620)
T ss_dssp TSSEEEECSCCCCSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCEEEEECCCTT
T ss_pred CCCEEeecCCCCCceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCcccCCceEEEecCCC
Confidence 344444433333335666677776 3455566554 2567889999999988765434444445556664
No 373
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=53.99 E-value=1.4e+02 Score=36.76 Aligned_cols=36 Identities=28% Similarity=0.245 Sum_probs=30.8
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEEcCCCcccce
Q 001336 892 RITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQAS 927 (1097)
Q Consensus 892 ~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~~~~~~ 927 (1097)
.+.+++..++..++++-+.|+++|+|++.++++...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 467778888889999999999999999999876543
No 374
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=48.07 E-value=44 Score=38.36 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=43.2
Q ss_pred CCeEEEEcCCCcEEEEEeC-------------CeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEe
Q 001336 942 ADTRVQFHLDQTHLLAVHE-------------TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAF 1002 (1097)
Q Consensus 942 ~v~~l~~s~dg~~l~~~~d-------------~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s 1002 (1097)
..-.|+|+++|++++.... ..+.+++..+++....+.. .-..+++.++|+||++.|++.-
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~-P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC-CCCccCcCeeECCCCCEEEEEE
Confidence 3567999999996665321 2466777777776655553 2367999999999999988764
No 375
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=46.50 E-value=31 Score=36.12 Aligned_cols=23 Identities=9% Similarity=0.055 Sum_probs=19.5
Q ss_pred ChhhhhhhcccCh---HHHHHHhccc
Q 001336 1 MRYFEDMVTNGEW---DEVEKYLSGF 23 (1097)
Q Consensus 1 ~~~~~~~i~~g~w---~~~~~~l~~~ 23 (1097)
+.+|++.|.+|++ =||.+.+..+
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi 41 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLV 41 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHH
Confidence 3689999999999 8898887765
No 376
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=45.13 E-value=60 Score=36.78 Aligned_cols=62 Identities=13% Similarity=0.172 Sum_probs=44.0
Q ss_pred cCCeEEEEcCCCcEEEEEeC-------------CeEEEEeCCCcceeeeeeccCCCCCEEEEEEecCCCEEEEEec
Q 001336 941 LADTRVQFHLDQTHLLAVHE-------------TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFE 1003 (1097)
Q Consensus 941 ~~v~~l~~s~dg~~l~~~~d-------------~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~ 1003 (1097)
.....|.|+++|.+.+.... ..|..++..+++....+.. .....++.++||||++.|+++-+
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~-P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC-CCCccccCCEECCCCCEEEEEEe
Confidence 34577999999987774321 2677777777876554431 12467999999999999887654
No 377
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=44.46 E-value=3.2e+02 Score=29.17 Aligned_cols=203 Identities=9% Similarity=0.014 Sum_probs=102.8
Q ss_pred eEEEEEeCCCCCEEEEEECCCcEEEEEcccc-----------eEEEEecc-cccCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001336 850 ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD-----------EVKTKLKG-HQKRITGLAFSNTLNVLVSSGADSQLCVW 917 (1097)
Q Consensus 850 i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~-----------~~~~~l~~-h~~~V~~l~~s~dg~~l~s~~~Dg~i~iw 917 (1097)
+..++. +....+.-..||.|+.|-.... .....+.. ....+..++++.-..+.+....||.|+.|
T Consensus 55 i~~i~~---G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 55 PVQLIG---GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp EEEEEE---ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred eEEEEe---CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 444544 4456666678999999975431 11122222 12235556777666777777889999999
Q ss_pred EcCCCccc------c-eeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCccee----------eeeecc
Q 001336 918 STDGWEKQ------A-SKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECL----------KQFVPR 980 (1097)
Q Consensus 918 d~~~~~~~------~-~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~----------~~~~~~ 980 (1097)
-....... . .....+..- . ...|..++.... ..++...+|.|+.|-......+ ......
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v~~l-~--~~~i~~va~G~~-hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~ 207 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVIESL-R--GIEVVDVAAGGA-HSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEA 207 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGG-T--TSCEEEEEECSS-EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG
T ss_pred eCCCCCcCCCCCCccCcCCeEeccc-C--CCeEEEEEeCcC-eEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecc
Confidence 65431110 0 011111110 0 012444443322 2344468899999976532111 111101
Q ss_pred CCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeee------eCCCCcCCCCCCCceeeEEEEEcCCCCCEEEEEe
Q 001336 981 EASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCR------INPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGL 1054 (1097)
Q Consensus 981 ~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~------~~~~~~~~~~h~~~v~~l~i~~~p~~~~~l~s~~ 1054 (1097)
-....|..++........+....||.|..|-....-++.. .. +..+..-....|..++. .....+.-.
T Consensus 208 ~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~-p~~v~~~~~~~v~~v~~-----G~~hs~alt 281 (389)
T 3kci_A 208 LQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKV-PMKIDSLTGLGVVKVEC-----GSQFSVALT 281 (389)
T ss_dssp GTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEE-EEECGGGTTSCEEEEEE-----ETTEEEEEE
T ss_pred cCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccc-cEEecccCCCcEEEEeC-----CCCEEEEEe
Confidence 1134577777654335666677899999996543211100 00 00000001123444433 245666678
Q ss_pred cCCcEEEEecC
Q 001336 1055 TDGGVYIIEPL 1065 (1097)
Q Consensus 1055 ~Dg~v~~W~~~ 1065 (1097)
.||.|+.|=-.
T Consensus 282 ~~G~v~~wG~n 292 (389)
T 3kci_A 282 KSGAVYTWGKG 292 (389)
T ss_dssp TTSCEEEEECC
T ss_pred CCCeEEEEeCC
Confidence 89999999754
No 378
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=42.33 E-value=3.1e+02 Score=28.43 Aligned_cols=240 Identities=10% Similarity=0.085 Sum_probs=126.4
Q ss_pred cCCCEEEEEe-CCeEEEEEcCCCc----eeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEccc---------ce
Q 001336 816 KNDSYVMSAS-GGKISLFNMMTFK----TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV---------DE 881 (1097)
Q Consensus 816 ~dg~~la~~s-dg~i~iwd~~~~~----~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~---------~~ 881 (1097)
|+..++++.+ +|.|+--.+.+.+ .-..++ ....+..+.... ....|+..+..|.++-+.... |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 4455666667 7888776553221 111233 233444444444 556777788889877766532 23
Q ss_pred EEEEe-cc-cccCeEEEEEecC---CCEEEEEeCCCcEEEEEcCCCccc----ceeeEeecCCCCCCccCCeEEEE-cCC
Q 001336 882 VKTKL-KG-HQKRITGLAFSNT---LNVLVSSGADSQLCVWSTDGWEKQ----ASKFLTIPNGRTASALADTRVQF-HLD 951 (1097)
Q Consensus 882 ~~~~l-~~-h~~~V~~l~~s~d---g~~l~s~~~Dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~l~~-s~d 951 (1097)
.+..+ .- ....|.++..-++ +.+++.++.+|.++.-.+..-... ....+.+.++ +.+..+.. ..+
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-----d~lv~~~~~~~~ 155 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-----DQVVDVHLTDGM 155 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-----CCEEEEEEECSC
T ss_pred ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-----CEEEEEEEeCCC
Confidence 22111 11 2234665543333 568899999999999887643221 1122233333 23444444 344
Q ss_pred CcEEEEEeCCeEEEEeCCCcc-------eeeeeeccCCCCCEEEEEEecCCC-EEEEEecCCeEEEEeCCCCceeeeeCC
Q 001336 952 QTHLLAVHETQIAIYEAPKLE-------CLKQFVPREASGPITHATYSCDSQ-SIYVAFEEGSVGVLTASTLRLRCRINP 1023 (1097)
Q Consensus 952 g~~l~~~~d~~v~vwd~~~~~-------~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~s~Dg~v~vwd~~~~~~~~~~~~ 1023 (1097)
...++.+.+|.+..+....-. -+..+.... ...|.++...+++. .|++.+..|..+..++.......+-..
T Consensus 156 ~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~-~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k 234 (323)
T 1wp5_A 156 NELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE-GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR 234 (323)
T ss_dssp SEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC
T ss_pred CEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCC-CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC
Confidence 455555788888887765321 122222212 45677776555555 788889999988887765333222111
Q ss_pred CCcCCC---CCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCC
Q 001336 1024 TAYLPT---NPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1066 (1097)
Q Consensus 1024 ~~~~~~---~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~ 1066 (1097)
+...+. .-...+..+. ... +++.++..+..|.+.-..+.+
T Consensus 235 Gv~~~~~~~~~~~~l~~~~-~v~--~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 235 GVVILRELKANPHRISGFV-VAQ--DSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CEECSCCCSSSCCCEEEEE-EEC--TTCEEEEEETTSCEEEEEGGG
T ss_pred CEECeeecCCCCceEEEEE-EeC--CCCeEEEEeCCCeEEEEEhhh
Confidence 111110 0011333221 222 345677788888877666654
No 379
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=41.98 E-value=75 Score=36.42 Aligned_cols=64 Identities=13% Similarity=0.218 Sum_probs=48.1
Q ss_pred ceEEEEEccCCCEEEEeeeCC--------CCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEE
Q 001336 516 SSTMMAYSADGARLFSCGTNK--------EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAA 579 (1097)
Q Consensus 516 ~v~~~~~s~~~~~l~~~~~~~--------~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 579 (1097)
..-.|+|+|.|++++.--.+. .+...+.+.+..++++.+-+.+.....++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 346789999998655432111 1345678888888998888888887899999999999877765
No 380
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=40.38 E-value=3.2e+02 Score=28.05 Aligned_cols=164 Identities=10% Similarity=0.090 Sum_probs=89.8
Q ss_pred CCCeEEEEEeC--CCCCEEEEEECCCcEEEEEccc-------ceEEEEecccccCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001336 847 PPAATFLAFHP--QDNNIIAIGMEDSSIQIYNVRV-------DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 917 (1097)
Q Consensus 847 ~~~i~~l~~sp--~~~~~la~g~~dg~v~vwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iw 917 (1097)
...|..+..-+ .++.+++..+.+|.++--.+.. |.....+..+ +.+..+....+...++..+.+|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf 172 (307)
T 1zi0_A 94 DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRF 172 (307)
T ss_dssp TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEE
Confidence 34565554321 1456888999999999988753 2222234444 566666666566678888889988888
Q ss_pred EcCCCccc-----ceeeEeecCCCCCCccCCeEEEEcCCCcEEE-EEeCCeEEEEeCCCcc-------eeeeeeccCCCC
Q 001336 918 STDGWEKQ-----ASKFLTIPNGRTASALADTRVQFHLDQTHLL-AVHETQIAIYEAPKLE-------CLKQFVPREASG 984 (1097)
Q Consensus 918 d~~~~~~~-----~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~-~~~d~~v~vwd~~~~~-------~~~~~~~~~h~~ 984 (1097)
+...-... ..+.+.+..+ ..|..+....++..++ ++..|.++-.+++... -+..+....-.+
T Consensus 173 ~~~~v~~~gr~a~Gv~~i~L~~~-----d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~ 247 (307)
T 1zi0_A 173 KESSVRAMGCNTTGVRGIRLGEG-----DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNG 247 (307)
T ss_dssp EGGGSCBCCTTCCCEECCCCCTT-----CCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTC
T ss_pred EHHHcCccCCCCCCeEeEEeCCC-----CEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCC
Confidence 76532111 1112222222 3455555444444444 4677777777663211 111111111134
Q ss_pred CEEEEEEecCCCEEEEEecCCeEEEEeCCCCc
Q 001336 985 PITHATYSCDSQSIYVAFEEGSVGVLTASTLR 1016 (1097)
Q Consensus 985 ~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~ 1016 (1097)
.+..+....+..-|+..+.+|.+.-+.+..-.
T Consensus 248 ~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~i~ 279 (307)
T 1zi0_A 248 LVVGAVQVDDCDQIMMITDAGTLVRTRVSEIS 279 (307)
T ss_dssp SEEEEEEECTTCEEEEEESSCCEEEEEGGGSC
T ss_pred eEEEEEEeCCCceEEEEcCCCcEEEEeccccc
Confidence 55555554444555666777777766665543
No 381
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=39.63 E-value=92 Score=36.37 Aligned_cols=37 Identities=8% Similarity=0.121 Sum_probs=29.6
Q ss_pred CEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCC
Q 001336 985 PITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINP 1023 (1097)
Q Consensus 985 ~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~ 1023 (1097)
.|.++.+ +..+|++.+.|+++|+|++.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4554444 578999999999999999999998766554
No 382
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=36.92 E-value=16 Score=46.55 Aligned_cols=40 Identities=15% Similarity=0.050 Sum_probs=33.4
Q ss_pred CEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeeeeCCC
Q 001336 985 PITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPT 1024 (1097)
Q Consensus 985 ~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~ 1024 (1097)
.+.+++..++..+|++.+.|+++|||++.+++++......
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 4556667789999999999999999999999988775533
No 383
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=34.68 E-value=5.4e+02 Score=28.97 Aligned_cols=289 Identities=11% Similarity=0.087 Sum_probs=139.6
Q ss_pred cCCCeeEEEEccCCCeEEEEEeCCCe----------------------------EEEEEcCCCceeeeeeeeEeeccccC
Q 001336 318 QGSAVKSMDFHPVQQILLVVGTNMGD----------------------------VMLWEVGSRERIAVKSFKVWELGACS 369 (1097)
Q Consensus 318 h~~~V~~v~fspdg~~lla~gs~dg~----------------------------i~iwd~~~~~~~~~~~~~~~~~~~~~ 369 (1097)
|-..+....|.-||+.=+++...+|+ +.|+|=.+|+.+....+. ...
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~-----p~r 251 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFE-----PAR 251 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECS-----SCC
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCC-----CCC
Confidence 44567778888888766777777665 677777777665432110 000
Q ss_pred ccccc-cccCCCCCC--eEEEEEc-cCCCEEEEEE---CCCEEEEEEccCCeeeeeeeeeeccc-----------CcEEE
Q 001336 370 MPLQA-SLSSDYTAS--VNRVMWS-PDGTLFGVAY---SKHIVHLYTYHGGDELRNHLEIEAHV-----------GSVND 431 (1097)
Q Consensus 370 ~~~~~-~~~~~h~~~--V~~v~~s-pd~~~las~~---~dg~i~iwd~~~~~~~~~~~~l~~h~-----------~~V~~ 431 (1097)
..... .--.++... ..++++- -+...++.+- ....|..||..+++... .-.+..-. ..+..
T Consensus 252 g~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~-~W~~d~~~~~~~~~~gqg~h~~~v 330 (591)
T 2zux_A 252 GNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSK-LWTLDSSKSGNEAFAGQGNHNLSI 330 (591)
T ss_dssp CCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEE-EEEEETTSTTCGGGSSCCCSCCEE
T ss_pred CcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEE-EEEecCCCCCcccccccCCCCCee
Confidence 00000 000011111 2233321 1222333332 22357788887765322 11222110 12344
Q ss_pred EEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEe-ecCCcCeEEEeecccCCccEEEEEcCCC----eEEEEEcCCCCc
Q 001336 432 LAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGHESPVYSICPHHKENIQFIFSTATDG----KIKAWLYDNLGS 506 (1097)
Q Consensus 432 l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~ 506 (1097)
..+.-||+. -|+.|+. ++| .+|+.+... .+|...+....|.|+..|..++.+.+++ -..+.|..+++.
T Consensus 331 aDVDgDG~d-EIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~v 403 (591)
T 2zux_A 331 ADVDGDGKD-EIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKI 403 (591)
T ss_dssp ECCSSSSSC-EEEETTE-----EEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCE
T ss_pred EeCCCCCCc-eEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcE
Confidence 455566665 3444431 344 455555543 3788888877887776677788776652 344578777777
Q ss_pred eeeecCCC--CceEEEEEccCCC--EEEEeeeCCCCCceEEEEeCCCCeeeEEe-cCCCCcceEEEEEcCCC-CEEEEEe
Q 001336 507 RVDYDAPG--HSSTMMAYSADGA--RLFSCGTNKEGESYLVEWNESEGAVKRTY-HGLGKRSVGVVQFDTTK-NRFLAAG 580 (1097)
Q Consensus 507 ~~~~~~~~--~~v~~~~~s~~~~--~l~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~ 580 (1097)
+....... +......|.|+.. .+.+ + -.+++.. ++.+... .. ..-..+-|..+. +.++-
T Consensus 404 lw~~~~~~d~Gr~~~~Didp~~pG~E~w~---~------~~l~~~~-G~~i~~~~p~---~~N~~i~WdGDl~relld-- 468 (591)
T 2zux_A 404 LWGVYAGKDVGRGMAADIDPRYPGQEVWA---N------GSLYSAK-GVKIGSGVPS---STNFGIWWDGDLLREQLD-- 468 (591)
T ss_dssp EEEECCSSCCCCEEEECCCTTSSSCEEEE---T------TEEECTT-SCBCSSCCCS---CCSEEECCSSSSSCEEEE--
T ss_pred EEEcCCCCCCCceeEEecCCCCCceEEEe---c------CceECCC-CCEecCCCCC---CcceeEEECCCCcHhhhC--
Confidence 76654332 2333333444432 1111 0 1245533 3333221 11 112345666665 33333
Q ss_pred CCCcEEEEECCCCceEEEEecCC-----CCCCcceEEEcC--CC--CEEEEEECCCcEEEEEcC
Q 001336 581 DEFMIKFWDMDNVNLLASIDADG-----GLQASPCIRFNK--EG--ILLAVSTNDNGIKILANA 635 (1097)
Q Consensus 581 ~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~--~~--~~l~s~~~dg~i~iw~~~ 635 (1097)
.+.|.-|+...++....+...+ ....-.|+...- |. ..|.-..++..++||...
T Consensus 469 -~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~ 531 (591)
T 2zux_A 469 -SNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTT 531 (591)
T ss_dssp -TTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCC
T ss_pred -CceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCC
Confidence 2468889988777544444321 011223344332 22 244434455579998753
No 384
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=32.76 E-value=4.2e+02 Score=27.15 Aligned_cols=237 Identities=11% Similarity=0.061 Sum_probs=124.2
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCceeE---------EeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEccc-------
Q 001336 817 NDSYVMSAS-GGKISLFNMMTFKTMT---------TFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV------- 879 (1097)
Q Consensus 817 dg~~la~~s-dg~i~iwd~~~~~~~~---------~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~------- 879 (1097)
+..++++.+ +|.|+--.+.+.+..+ .++ ....+..+.... ....|+..+..|.++-+....
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 445566666 7888776665433211 122 223344444443 456777778888777666532
Q ss_pred --ceEEE---EecccccCeEEEEEe---cCCCEEEEEeCCCcEEEEEcCCCccc---ceeeEeecCCCCCCccCCeEEEE
Q 001336 880 --DEVKT---KLKGHQKRITGLAFS---NTLNVLVSSGADSQLCVWSTDGWEKQ---ASKFLTIPNGRTASALADTRVQF 948 (1097)
Q Consensus 880 --~~~~~---~l~~h~~~V~~l~~s---~dg~~l~s~~~Dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~l~~ 948 (1097)
|..+. .+. ....|.++..- .++.+++..+.+|.++.-.+..-... ....+.+.++ +.+..+..
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-----d~lv~~~~ 153 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-----DELIGVDL 153 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-----CCEEEEEE
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-----CEEEEEEE
Confidence 22221 122 23456665442 35668889999999999877532221 1122222222 23444443
Q ss_pred -cCCCcEEEEEeCCeEEEEeCCCcc-------eeeeeeccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCceeee
Q 001336 949 -HLDQTHLLAVHETQIAIYEAPKLE-------CLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCR 1020 (1097)
Q Consensus 949 -s~dg~~l~~~~d~~v~vwd~~~~~-------~~~~~~~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~~~ 1020 (1097)
..+...++.+.+|.+..+....-. -+..+... -...|.++....++..|++.+..|.++-.++.......+
T Consensus 154 ~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~R 232 (307)
T 1zi0_A 154 TSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSR 232 (307)
T ss_dssp ECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCT
T ss_pred eCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCC
Confidence 444455556788888777764321 11112221 245677776666667888899999999888754332222
Q ss_pred eCCCC---cCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEEecCC
Q 001336 1021 INPTA---YLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1066 (1097)
Q Consensus 1021 ~~~~~---~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W~~~~ 1066 (1097)
-..+. .+.. -.+.+..+... . +.+.++..+.+|.+.-..+.+
T Consensus 233 g~kG~~~~~~~~-~~~~lv~~~~v--~-~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 233 ATKGVISIKVTE-RNGLVVGAVQV--D-DCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp TSCCEESSCCCT-TTCSEEEEEEE--C-TTCEEEEEESSCCEEEEEGGG
T ss_pred CCCCEEeeEecC-CCCeEEEEEEe--C-CCceEEEEcCCCcEEEEeccc
Confidence 11110 0111 12344333222 2 346677788888877666654
No 385
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=31.63 E-value=1.6e+02 Score=33.37 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=46.6
Q ss_pred ceEEEEEccCCCEEEEeeeC--------CCCCceEEEEeCCCCeeeEEecCCCCcceEEEEEcCCCCEEEEEe
Q 001336 516 SSTMMAYSADGARLFSCGTN--------KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG 580 (1097)
Q Consensus 516 ~v~~~~~s~~~~~l~~~~~~--------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 580 (1097)
....+.|+++|.+.+..-.. +.+...+..++..++++.+.+.+.....++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 56789999999877732111 112346888888888877777665545789999999998887764
No 386
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=31.39 E-value=44 Score=27.35 Aligned_cols=53 Identities=4% Similarity=0.066 Sum_probs=33.5
Q ss_pred hhcccChHHHHHHhccccccCCccccceeeehhhHhhhhHHHhcCChhHHHHHHHhccc
Q 001336 7 MVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLK 65 (1097)
Q Consensus 7 ~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~E~l~~~~~~~a~~~l~~~l~ 65 (1097)
....|+|++|+..+.+...++.... . +.+ .+=+. +...|+.++|+..+++-+.
T Consensus 17 ~~~~g~~~~A~~~~~~al~~~p~~~-~-a~~-~lg~~---~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 17 HLKHDNASRALALFEELVETDPDYV-G-TYY-HLGKL---YERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCT-H-HHH-HHHHH---HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcH-H-HHH-HHHHH---HHHcCCHHHHHHHHHHHHh
Confidence 4567999999999988755543321 1 112 12222 3357899999999987543
No 387
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=30.15 E-value=1e+02 Score=39.07 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=31.3
Q ss_pred cEEEEEEecCCCcEEEEEEeCCCcEEEEECCCCceeEEee
Q 001336 428 SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE 467 (1097)
Q Consensus 428 ~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 467 (1097)
.+.+++..++.. ++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~--~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYN--VLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTT--EEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCcc--EEEEEeCCCEEEEEECCCCCeEEeec
Confidence 345566667777 89999999999999999999988754
No 388
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=29.98 E-value=52 Score=28.47 Aligned_cols=70 Identities=7% Similarity=0.009 Sum_probs=43.1
Q ss_pred hhcccChHHHHHHhccccccCCccccceeeehhhHhhhhHHHhcCChhHHHHHHHhccccccccChHHHHHHHHhhc
Q 001336 7 MVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 83 (1097)
Q Consensus 7 ~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~E~l~~~~~~~a~~~l~~~l~~l~~~~~~~~~~l~~ll~ 83 (1097)
....|+|++|+..+.+...++... ..++-..=.=++..|+..+|+..+.+-|. +...+.+-+..|..++.
T Consensus 23 ~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKRDPEN------AILYSNRAACLTKLMEFQRALDDCDTCIR-LDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHhhccHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHH
Confidence 456899999999888764444332 11222222334467899999999987544 22335566666666554
No 389
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=26.76 E-value=5.3e+02 Score=26.42 Aligned_cols=241 Identities=11% Similarity=0.106 Sum_probs=121.0
Q ss_pred cCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCCCCC-ccccccCCCCCCCCCeeEEEEccCCCEEEEEe-C
Q 001336 749 NSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSG-ILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-G 826 (1097)
Q Consensus 749 pdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~la~~s-d 826 (1097)
++...+++.+.+|.|+--.+..-... . ..+ -.....+. ....+..+........++..+ .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~--------------~-~~~~g~~~~~lk---e~D~l~~~~~~~~~~~ll~~T~~ 67 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQ--------------G-TGGKGLSSFDLN---DGDEIVIALCVNTHDYLFMISNE 67 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBC--------------C-SSCCCEECCCCC---TTCCEEEEEEEETTCEEEEEETT
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhcc--------------c-cCCCCceecccC---CCCEEEEEEEECCCCEEEEEECC
Confidence 45667888899999886544311000 0 000 01111122 234444544444444444444 7
Q ss_pred CeEEEEEcC---CC------ce---eEEeCCCCCCeEEEEEeCC--CCCEEEEEECCCcEEEEEccc-------ceEEEE
Q 001336 827 GKISLFNMM---TF------KT---MTTFMPPPPAATFLAFHPQ--DNNIIAIGMEDSSIQIYNVRV-------DEVKTK 885 (1097)
Q Consensus 827 g~i~iwd~~---~~------~~---~~~~~~~~~~i~~l~~sp~--~~~~la~g~~dg~v~vwd~~~-------~~~~~~ 885 (1097)
|.++-.... .. .. ...+. ....|.++...++ +..+|+..+..|.++...+.. |.....
T Consensus 68 G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~ 146 (312)
T 1suu_A 68 GKLYLINAYEIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIK 146 (312)
T ss_dssp SEEEEEEGGGSCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBC
T ss_pred CeEEEEEHHHCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEe
Confidence 876555442 21 11 11122 2334555543321 356788889999999888753 222233
Q ss_pred ecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCCC----c-ccceeeEeecCCCCCCccCCeEEEEcCCCc-EEEEEe
Q 001336 886 LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGW----E-KQASKFLTIPNGRTASALADTRVQFHLDQT-HLLAVH 959 (1097)
Q Consensus 886 l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~~----~-~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~~~~ 959 (1097)
+.. .+.+..+....+...++..+.+|.+..+....- + ......+.+..+ ..+..+..-.++. .++++.
T Consensus 147 L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~-----d~vv~~~~v~~~~~l~~vt~ 220 (312)
T 1suu_A 147 LND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEG-----DLFVKVLSVKENPYLLIVSE 220 (312)
T ss_dssp CCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTT-----CCEEEEEECTTCSEEEEEET
T ss_pred cCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCC-----CEEEEEEEECCCCeEEEEEC
Confidence 443 466777666666677888899999998887541 1 111223333322 3355555544444 444477
Q ss_pred CCeEEEEeCCCcc-------eeeeeecc-CCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCC
Q 001336 960 ETQIAIYEAPKLE-------CLKQFVPR-EASGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1014 (1097)
Q Consensus 960 d~~v~vwd~~~~~-------~~~~~~~~-~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~ 1014 (1097)
.|......++.-. -+..+... .....+.++....++.-+...+..|.+.-..+..
T Consensus 221 ~G~~kr~~~~e~~~~~R~~kGv~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 221 NGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp TSEEEEEEGGGSCBCCTTCCCEECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGG
T ss_pred CCceEEEEHHHhcccCCCCCCEEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEccc
Confidence 8888888775321 11112211 1123454443333444455555566554444444
No 390
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=26.31 E-value=6e+02 Score=26.86 Aligned_cols=152 Identities=9% Similarity=0.117 Sum_probs=83.3
Q ss_pred ccCCceeeeeccCcEEEEeccCCCCCCccCccccccCCcccCC-CC-Cc-cccccCCCCCCCCCeeEEEEccCCCEEEEE
Q 001336 748 TNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP-PS-GI-LMTNDISDTNPEDAVPCFALSKNDSYVMSA 824 (1097)
Q Consensus 748 spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~-~~-~~-~~~~~~~~~~h~~~v~~l~~s~dg~~la~~ 824 (1097)
-|+...+++.+.+|.|+--.+.. |.. .. +. .....+. ....+..+........|+..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~-----------------y~~~~r~g~g~~~~~lk---e~D~l~~~~~~~t~d~ll~f 63 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSA-----------------YRAQRRGGRGRSAASTK---EEDFIDQLWLVNTHDTLLTF 63 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHH-----------------HHHTCCCCCCSEEEECS---CCCCEEEEEEECTTCEEEEE
T ss_pred ccCCCEEEEEeCCCEEEEeeHHH-----------------hhhhccCCCCceecccC---CCCEEEEEEEecCCCEEEEE
Confidence 35677889999999988633221 000 00 00 1111121 34555555555555544444
Q ss_pred -eCCeEEEE---EcC------CCceeEE---eCCCCCCeEEEEEeC--CCCCEEEEEECCCcEEEEEcccc-------eE
Q 001336 825 -SGGKISLF---NMM------TFKTMTT---FMPPPPAATFLAFHP--QDNNIIAIGMEDSSIQIYNVRVD-------EV 882 (1097)
Q Consensus 825 -sdg~i~iw---d~~------~~~~~~~---~~~~~~~i~~l~~sp--~~~~~la~g~~dg~v~vwd~~~~-------~~ 882 (1097)
+.|.+.-+ ++. .|..+.. +. ....|.++..-. .++.+|+.++..|.++--.+..- ..
T Consensus 64 T~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ 142 (370)
T 3l6v_A 64 TSSGKVFWLPVHQLPEAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKI 142 (370)
T ss_dssp ETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEE
T ss_pred eCCCeEEEEEHHHCcCCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceE
Confidence 46775444 442 2222221 22 234565554432 13568999999999999887532 22
Q ss_pred EEEecccccCeEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001336 883 KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG 921 (1097)
Q Consensus 883 ~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~iwd~~~ 921 (1097)
...++. .+.+..+....+...|+..+.+|.+..++...
T Consensus 143 ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 143 AINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp SSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGGG
T ss_pred EEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEccc
Confidence 223333 45566666665666788888899888887643
No 391
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=25.24 E-value=84 Score=28.06 Aligned_cols=70 Identities=21% Similarity=0.283 Sum_probs=38.2
Q ss_pred hcccChHHHHHHhccccccCCccccceeeehhhHhhhhHHHhcCChhHHHHHHHhccccccccChHHHHHHHHhhcc
Q 001336 8 VTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTL 84 (1097)
Q Consensus 8 i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~E~l~~~~~~~a~~~l~~~l~~l~~~~~~~~~~l~~ll~~ 84 (1097)
...|+|++|+..+.+...++.+.. ..+...=.=+...|+.++|+..+++-|. +...+.+-+..|+.++..
T Consensus 42 ~~~~~~~~A~~~~~~al~~~p~~~------~a~~~lg~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 42 YEAKEYDLAKKYICTYINVQERDP------KAHRFLGLLYELEENTDKAVECYRRSVE-LNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCchHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH
Confidence 456788888887776644433321 1111112223356778888888876433 212256666677665543
No 392
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=25.12 E-value=90 Score=26.86 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=8.4
Q ss_pred HHHhcCChhHHHHHHHh
Q 001336 46 EALDKRDRAKAVEILVK 62 (1097)
Q Consensus 46 E~l~~~~~~~a~~~l~~ 62 (1097)
+++..|++++|+..+.+
T Consensus 22 ~~~~~g~~~~A~~~~~~ 38 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNE 38 (126)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 34444555555555544
No 393
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=24.06 E-value=1e+02 Score=26.19 Aligned_cols=71 Identities=8% Similarity=0.052 Sum_probs=42.1
Q ss_pred hhhcccChHHHHHHhccccccCCccccceeeehhhHhhhhHHHhcCChhHHHHHHHhccccccccChHHHHHHHHhhc
Q 001336 6 DMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 83 (1097)
Q Consensus 6 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~E~l~~~~~~~a~~~l~~~l~~l~~~~~~~~~~l~~ll~ 83 (1097)
..+..|+|++|+..+.+......... . +.|.+ =.. +...|+..+|+..|++-+. +...+.+-+..|..++.
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~P~~~-~-a~~~l-g~~---~~~~g~~~~A~~~~~~al~-l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKEPERE-E-AWRSL-GLT---QAENEKDGLAIIALNHARM-LDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCH-H-HHHHH-HHH---HHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCH-H-HHHHH-HHH---HHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHH
Confidence 45678999999999988754443321 1 22222 122 3357999999999987433 21224455555555443
No 394
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=22.60 E-value=7.3e+02 Score=26.55 Aligned_cols=202 Identities=9% Similarity=-0.041 Sum_probs=98.1
Q ss_pred CCeEEEEEeCCCCCEEEEEECCCcEEEEEc--c-cceE---------EEEecccccCeEEEEEecCCCEEEEEeCCCcEE
Q 001336 848 PAATFLAFHPQDNNIIAIGMEDSSIQIYNV--R-VDEV---------KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLC 915 (1097)
Q Consensus 848 ~~i~~l~~sp~~~~~la~g~~dg~v~vwd~--~-~~~~---------~~~l~~h~~~V~~l~~s~dg~~l~s~~~Dg~i~ 915 (1097)
..|..++.. ....+.-..||.|+.|-. . .+++ .-........|..|+.. ..+.+....||.|+
T Consensus 127 ~~i~~va~G---~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~ 201 (423)
T 3mvd_K 127 GKALCISAG---DSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVF 201 (423)
T ss_dssp SCEEEEEEC---SSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEE
T ss_pred CCEEEEEcC---cCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEecCCeEE
Confidence 456666653 456666678999999985 2 2221 11111123356666654 34455567899999
Q ss_pred EEEcCCCcccc------------------eeeEeecCCCCCCccCCeEEEEcCCCcEEEEEeCCeEEEEeCCCcceeee-
Q 001336 916 VWSTDGWEKQA------------------SKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQ- 976 (1097)
Q Consensus 916 iwd~~~~~~~~------------------~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~- 976 (1097)
.|-........ .....+.... ...|..++......+++...++.|+.|-......+..
T Consensus 202 ~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~---~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~ 278 (423)
T 3mvd_K 202 TVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITR---AKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHE 278 (423)
T ss_dssp EEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTT---CCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSC
T ss_pred EeeCCcCCccCCCcccccccccccccccccCCeEEeecC---CccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCC
Confidence 99754321110 0011111000 0224444444333322224778888887553211110
Q ss_pred -------ee-ccCCCCCEEEEEEecCCCEEEEEecCCeEEEEeCCCCcee------eeeCCCCcCCCCCCCceeeEEEEE
Q 001336 977 -------FV-PREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLR------CRINPTAYLPTNPSLRVYPLVIAG 1042 (1097)
Q Consensus 977 -------~~-~~~h~~~v~~v~~s~dg~~l~s~s~Dg~v~vwd~~~~~~~------~~~~~~~~~~~~h~~~v~~l~i~~ 1042 (1097)
+. .......|..++-. ....+....||.|..|-....-++ .....+..++ .-...|..|+..
T Consensus 279 ~~~~~~~~~p~~~~~~~v~~ia~G--~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~-~l~~~v~~ia~G- 354 (423)
T 3mvd_K 279 TKGKEFALTPIKTELKDIRHIAGG--QHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVK-KLTEKIVSVGCG- 354 (423)
T ss_dssp CTTCSEEEEEEEECCCSEEEEEEC--SSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECT-TCCSCEEEEEEE-
T ss_pred CCCCceeeeeEEcCCCCeEEEEcc--cCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEec-cCCCCEEEEEcC-
Confidence 00 00002456665543 334555667899999965332111 0000000111 111256555432
Q ss_pred cCCCCCEEEEEecCCcEEEEecC
Q 001336 1043 NPTDPNQFALGLTDGGVYIIEPL 1065 (1097)
Q Consensus 1043 ~p~~~~~l~s~~~Dg~v~~W~~~ 1065 (1097)
....+....||.|+.|=..
T Consensus 355 ----~~hs~alt~~G~v~~wG~n 373 (423)
T 3mvd_K 355 ----EVCSYAVTIDGKLYSWGSG 373 (423)
T ss_dssp ----TTEEEEEETTSCEEEEECC
T ss_pred ----CCeEEEEcCCCCEEEECCC
Confidence 3455666899999999754
No 395
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=22.25 E-value=1.1e+02 Score=25.78 Aligned_cols=72 Identities=8% Similarity=-0.012 Sum_probs=44.8
Q ss_pred hhhcccChHHHHHHhccccccCCccccceeeehhhHhhhhHHHhcCChhHHHHHHHhccccccccChHHHHHHHHhhcc
Q 001336 6 DMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTL 84 (1097)
Q Consensus 6 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~E~l~~~~~~~a~~~l~~~l~~l~~~~~~~~~~l~~ll~~ 84 (1097)
.....|+|++|+..+.+...+.... ..++-..=.-++..|++.+|+..+++-|.-- ..+..-+..|..++..
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 3567899999999988774444332 1222222333446799999999999854421 2245566666665543
No 396
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=21.29 E-value=7.4e+02 Score=26.14 Aligned_cols=238 Identities=10% Similarity=0.027 Sum_probs=126.3
Q ss_pred cCCCEEEEEe-CCeEEEEEcCC---------CceeEEeCCCCCCeEEEEEeCCCCCEEEEEECCCcEEEEEccc------
Q 001336 816 KNDSYVMSAS-GGKISLFNMMT---------FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV------ 879 (1097)
Q Consensus 816 ~dg~~la~~s-dg~i~iwd~~~---------~~~~~~~~~~~~~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~------ 879 (1097)
++..++++.+ +|.|+--.+.+ +..-..++ ....+..+.... ....|+..+..|.++-+....
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 5666777777 88888765432 12222333 345566665555 566777788888877766432
Q ss_pred ---ceEEEE---ecccccCeEEEEEec---CCCEEEEEeCCCcEEEEEcCCCccc---ceeeEeecCCCCCCccCCeEEE
Q 001336 880 ---DEVKTK---LKGHQKRITGLAFSN---TLNVLVSSGADSQLCVWSTDGWEKQ---ASKFLTIPNGRTASALADTRVQ 947 (1097)
Q Consensus 880 ---~~~~~~---l~~h~~~V~~l~~s~---dg~~l~s~~~Dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~l~ 947 (1097)
|..+.. +. ....|.++.... ++.+|+.++..|.++.-.+..-... ....+.+.++ +.+..+.
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~-----d~lv~v~ 156 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEG-----DALVGVA 156 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTT-----CCEEEEE
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCC-----CEEEEEE
Confidence 222211 22 234566654432 4568999999999999887543321 1122222222 2344444
Q ss_pred EcC-CCcEEEEEeCCeEEEEeCCCcc-------eeeeeeccCCCCCEEEEEEec--------------------------
Q 001336 948 FHL-DQTHLLAVHETQIAIYEAPKLE-------CLKQFVPREASGPITHATYSC-------------------------- 993 (1097)
Q Consensus 948 ~s~-dg~~l~~~~d~~v~vwd~~~~~-------~~~~~~~~~h~~~v~~v~~s~-------------------------- 993 (1097)
... +...++.+..|.+..+....-. -+..+... -...|.++...+
T Consensus 157 ~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~ 235 (370)
T 3l6v_A 157 LTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEP 235 (370)
T ss_dssp EECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC------------------------
T ss_pred EeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccccccccccccccccccccc
Confidence 433 3445555778887777654221 11122221 245666665554
Q ss_pred ---------CCCEEEEEecCCeEEEEeCCCCceeeeeCCCC--cCCCCCCCceeeEEEEEcCCCCCEEEEEecCCcEEEE
Q 001336 994 ---------DSQSIYVAFEEGSVGVLTASTLRLRCRINPTA--YLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYII 1062 (1097)
Q Consensus 994 ---------dg~~l~s~s~Dg~v~vwd~~~~~~~~~~~~~~--~~~~~h~~~v~~l~i~~~p~~~~~l~s~~~Dg~v~~W 1062 (1097)
++..|++.+..|..+...+.......+-..+. +-...-.+.+..+... .+.+.++..+..|.+.-.
T Consensus 236 ~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v---~~~d~i~liT~~G~~iR~ 312 (370)
T 3l6v_A 236 AVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLL---GSTDEVMLISDGGTLVRT 312 (370)
T ss_dssp -----------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEE---CTTCEEEEEETTCCEEEE
T ss_pred cccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEe---CCCceEEEEcCCCeEEEe
Confidence 45689999999999998876654433221110 0000112334333222 234566666777766555
Q ss_pred ecC
Q 001336 1063 EPL 1065 (1097)
Q Consensus 1063 ~~~ 1065 (1097)
.+.
T Consensus 313 ~v~ 315 (370)
T 3l6v_A 313 RGS 315 (370)
T ss_dssp EGG
T ss_pred eHh
Confidence 443
No 397
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=20.99 E-value=1.2e+02 Score=35.56 Aligned_cols=37 Identities=5% Similarity=0.149 Sum_probs=30.0
Q ss_pred CeEEEEEeCCCCCEEEEEECCCcEEEEEcccceEEEEecc
Q 001336 849 AATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG 888 (1097)
Q Consensus 849 ~i~~l~~sp~~~~~la~g~~dg~v~vwd~~~~~~~~~l~~ 888 (1097)
.|.++.+ +..++++-+.|+++|+|++.+++++....-
T Consensus 223 ~Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4565555 457999999999999999999998877654
No 398
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=20.66 E-value=1.1e+02 Score=26.92 Aligned_cols=21 Identities=24% Similarity=0.053 Sum_probs=17.8
Q ss_pred hhhhHHHhcCChhHHHHHHHh
Q 001336 42 QKYLEALDKRDRAKAVEILVK 62 (1097)
Q Consensus 42 q~~~E~l~~~~~~~a~~~l~~ 62 (1097)
...-||+..++..+|.++++.
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~e 32 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKE 32 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 345688899999999999985
No 399
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=20.31 E-value=1.3e+02 Score=25.28 Aligned_cols=71 Identities=7% Similarity=-0.009 Sum_probs=42.8
Q ss_pred hhhcccChHHHHHHhccccccCCccccceeeehhhHhhhhHHHhcCChhHHHHHHHhccccccccChHHHHHHHHhhc
Q 001336 6 DMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 83 (1097)
Q Consensus 6 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~E~l~~~~~~~a~~~l~~~l~~l~~~~~~~~~~l~~ll~ 83 (1097)
.....|+|++|+.++.+........ ..++...=.-+...++..+|+.++.+-+.-- ..+..-+..|+.++.
T Consensus 25 ~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 25 ECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHTTCSHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 3467899999999998874443321 1122222223456799999999998754421 224555555655443
Done!