Your job contains 1 sequence.
>001337
MVMHCVFRRHGKLLEEGASGFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAA
FGSKHWASVYLASTPQQAAAMGLKFPGVDEVTDFSSNCPNMWKFRSIITYRLCKVSGSVE
EIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDRKLQLHLKRRRHRK
ISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLES
SVKERSLSNGISSVSDSALPDSSELRGIKRSNESEEPNSEKKRSRTIIIGSDEADVVKDE
CSTKLEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCK
CLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASC
WQCCCCSPSLLKRLTSELGRAMGSENLIVSSSESDSENSDADNNLKIGGKRKQKKKIRRI
LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI
TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA
HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFM
LEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV
CDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFR
NRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITV
KLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPS
REDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSG
KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDG
RTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAI
YRAWRCMDKQSQFLLTG
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001337
(1097 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|K7GSF7 - symbol:LOC100514440 "Uncharacterized p... 820 3.9e-133 5
UNIPROTKB|F1MQ85 - symbol:ATRX "Uncharacterized protein" ... 820 3.9e-132 5
UNIPROTKB|F1PKC1 - symbol:ATRX "Uncharacterized protein" ... 821 1.1e-131 5
UNIPROTKB|F1LM36 - symbol:F1LM36 "Uncharacterized protein... 818 2.1e-131 5
MGI|MGI:103067 - symbol:Atrx "alpha thalassemia/mental re... 813 9.3e-131 5
UNIPROTKB|P46100 - symbol:ATRX "Transcriptional regulator... 813 2.6e-130 5
UNIPROTKB|E1C8H5 - symbol:ATRX "Uncharacterized protein" ... 822 7.4e-129 4
ZFIN|ZDB-GENE-030912-11 - symbol:atrx "alpha thalassemia/... 803 1.1e-126 3
UNIPROTKB|F1RPI9 - symbol:LOC100514440 "Uncharacterized p... 816 2.5e-120 3
UNIPROTKB|E1C963 - symbol:RAD54L2 "Uncharacterized protei... 440 4.8e-95 3
FB|FBgn0039338 - symbol:XNP "XNP" species:7227 "Drosophil... 676 5.2e-93 3
ZFIN|ZDB-GENE-030131-3097 - symbol:rad54l2 "RAD54-like 2 ... 707 2.3e-92 4
UNIPROTKB|H0Y760 - symbol:RAD54L2 "Helicase ARIP4" specie... 447 1.3e-91 3
UNIPROTKB|Q9Y4B4 - symbol:RAD54L2 "Helicase ARIP4" specie... 447 1.5e-91 3
UNIPROTKB|F1PB65 - symbol:RAD54L2 "Uncharacterized protei... 447 3.1e-91 3
RGD|1310600 - symbol:Rad54l "RAD54 like (S. cerevisiae)" ... 447 3.3e-91 3
RGD|1561889 - symbol:Rad54l2 "Rad54 like 2 (S. cerevisiae... 447 3.3e-91 3
MGI|MGI:1933196 - symbol:Rad54l2 "RAD54 like 2 (S. cerevi... 444 2.2e-90 3
WB|WBGene00007761 - symbol:rad-26 species:6239 "Caenorhab... 428 3.5e-87 4
WB|WBGene00006961 - symbol:xnp-1 species:6239 "Caenorhabd... 630 1.3e-83 3
UNIPROTKB|E1BEK4 - symbol:Bt.109773 "Uncharacterized prot... 426 1.7e-83 4
UNIPROTKB|E7EU19 - symbol:RAD54L2 "Helicase ARIP4" specie... 447 1.4e-78 3
DICTYBASE|DDB_G0293120 - symbol:DDB_G0293120 "CHR group p... 771 1.5e-78 3
FB|FBgn0034976 - symbol:CG4049 species:7227 "Drosophila m... 450 1.6e-68 2
UNIPROTKB|G4N791 - symbol:MGG_06447 "SNF2 family ATP-depe... 434 2.5e-52 2
UNIPROTKB|F1S3V8 - symbol:RAD54L "Uncharacterized protein... 432 1.1e-51 2
UNIPROTKB|F1PJC9 - symbol:RAD54L "Uncharacterized protein... 414 3.0e-50 2
ZFIN|ZDB-GENE-040426-968 - symbol:rad54l "RAD54-like (S. ... 412 7.4e-50 2
UNIPROTKB|Q92698 - symbol:RAD54L "DNA repair and recombin... 415 9.8e-50 2
UNIPROTKB|A1L4Z4 - symbol:RAD54L "Uncharacterized protein... 414 1.3e-49 2
UNIPROTKB|O12944 - symbol:RAD54L "DNA repair and recombin... 410 1.9e-49 2
UNIPROTKB|F1NBD4 - symbol:RAD54L "DNA repair and recombin... 407 4.3e-49 2
UNIPROTKB|F1NX31 - symbol:RAD54L "DNA repair and recombin... 407 4.7e-49 2
TAIR|locus:2094083 - symbol:RAD54 "homolog of RAD54" spec... 419 4.9e-49 3
MGI|MGI:894697 - symbol:Rad54l "RAD54 like (S. cerevisiae... 412 5.7e-49 2
DICTYBASE|DDB_G0285117 - symbol:rad54b "CHR group protein... 429 2.4e-48 2
ASPGD|ASPL0000044476 - symbol:AN2255 species:162425 "Emer... 458 1.4e-47 3
UNIPROTKB|B3MMA5 - symbol:okr "DNA repair and recombinati... 396 1.6e-47 2
UNIPROTKB|B4MX21 - symbol:okr "DNA repair and recombinati... 391 1.7e-47 2
CGD|CAL0001568 - symbol:RAD54 species:5476 "Candida albic... 376 2.5e-47 2
UNIPROTKB|Q5AKX3 - symbol:RAD54 "Putative uncharacterized... 376 2.5e-47 2
UNIPROTKB|B4KHL5 - symbol:okr "DNA repair and recombinati... 399 3.0e-47 2
POMBASE|SPAC15A10.03c - symbol:rad54 "DNA-dependent ATPas... 388 7.3e-47 2
WB|WBGene00004298 - symbol:rad-54 species:6239 "Caenorhab... 384 7.9e-47 2
FB|FBgn0002989 - symbol:okr "okra" species:7227 "Drosophi... 389 2.5e-46 2
UNIPROTKB|B3NAN8 - symbol:okr "DNA repair and recombinati... 384 3.4e-46 2
UNIPROTKB|B4NXB8 - symbol:okr "DNA repair and recombinati... 384 7.0e-46 2
UNIPROTKB|B4M9A8 - symbol:okr "DNA repair and recombinati... 377 7.0e-45 2
UNIPROTKB|F1P5M3 - symbol:RAD54B "DNA repair and recombin... 272 1.3e-44 3
ASPGD|ASPL0000027956 - symbol:AN10677 species:162425 "Eme... 354 1.4e-44 3
UNIPROTKB|B4JCS7 - symbol:okr "DNA repair and recombinati... 374 1.5e-44 2
UNIPROTKB|Q29KH2 - symbol:okr "DNA repair and recombinati... 374 3.9e-44 2
UNIPROTKB|B4GS98 - symbol:okr "DNA repair and recombinati... 374 5.0e-44 2
UNIPROTKB|Q9DG67 - symbol:RAD54B "DNA repair and recombin... 273 1.7e-43 4
SGD|S000003131 - symbol:RAD54 "DNA-dependent ATPase that ... 347 2.8e-43 3
CGD|CAL0000882 - symbol:orf19.607 species:5476 "Candida a... 329 3.8e-43 2
POMBASE|SPCP25A2.02c - symbol:rhp26 "SNF2 family helicase... 247 4.2e-43 3
DICTYBASE|DDB_G0282997 - symbol:rad54 "CHR group protein"... 367 1.3e-42 3
ZFIN|ZDB-GENE-060810-50 - symbol:rad54b "RAD54 homolog B ... 335 1.9e-42 2
SGD|S000003796 - symbol:RAD26 "Protein involved in transc... 235 1.7e-41 3
FB|FBgn0032157 - symbol:Etl1 "Etl1 homologue" species:722... 314 3.3e-41 4
UNIPROTKB|F1SDX0 - symbol:ERCC6 "Uncharacterized protein"... 325 6.3e-41 3
DICTYBASE|DDB_G0281441 - symbol:ercc6 "DNA excision repai... 326 7.8e-41 3
UNIPROTKB|Q03468 - symbol:ERCC6 "DNA excision repair prot... 321 8.6e-41 3
UNIPROTKB|E2QSK6 - symbol:ERCC6L "Uncharacterized protein... 325 1.0e-40 3
ZFIN|ZDB-GENE-070228-1 - symbol:ercc6 "excision repair cr... 320 1.3e-40 3
GENEDB_PFALCIPARUM|PF08_0126 - symbol:PF08_0126 "DNA repa... 369 1.5e-40 2
UNIPROTKB|Q8IAN4 - symbol:PF08_0126 "DNA repair protein r... 369 1.5e-40 2
UNIPROTKB|D3ZZZ1 - symbol:Ercc6 "Protein Ercc6" species:1... 324 1.6e-40 3
UNIPROTKB|Q9Y620 - symbol:RAD54B "DNA repair and recombin... 259 3.3e-40 4
MGI|MGI:1923501 - symbol:Ercc6l2 "excision repair cross-c... 295 5.2e-40 2
UNIPROTKB|F1PW14 - symbol:RAD54B "Uncharacterized protein... 251 6.3e-40 3
UNIPROTKB|F1NCD0 - symbol:ERCC6L "Uncharacterized protein... 286 6.9e-40 3
UNIPROTKB|E1BYA8 - symbol:ERCC6 "Uncharacterized protein"... 328 8.9e-40 3
UNIPROTKB|F1MSA4 - symbol:RAD54B "Uncharacterized protein... 256 9.4e-40 3
ASPGD|ASPL0000068126 - symbol:cshA species:162425 "Emeric... 312 1.5e-39 2
UNIPROTKB|F1RY50 - symbol:RAD54B "Uncharacterized protein... 259 1.6e-39 3
UNIPROTKB|Q5T890 - symbol:RAD26L "Putative DNA repair and... 282 2.2e-39 2
TAIR|locus:2024198 - symbol:SWI2 "switch 2" species:3702 ... 228 3.4e-39 4
UNIPROTKB|E2RGN3 - symbol:ERCC6L2 "Uncharacterized protei... 291 3.0e-38 3
UNIPROTKB|F1PQX1 - symbol:ERCC6L2 "Uncharacterized protei... 291 4.3e-38 3
CGD|CAL0004359 - symbol:RDH54 species:5476 "Candida albic... 311 4.6e-38 2
UNIPROTKB|F1S4L1 - symbol:ERCC6L2 "Uncharacterized protei... 233 8.7e-38 5
SGD|S000000277 - symbol:RDH54 "DNA-dependent ATPase" spec... 308 1.5e-37 3
UNIPROTKB|G5E5P9 - symbol:LOC789977 "Uncharacterized prot... 282 1.7e-37 4
UNIPROTKB|H0Y3T0 - symbol:ATRX "Transcriptional regulator... 409 4.6e-37 1
UNIPROTKB|E1BFL2 - symbol:ERCC6 "Uncharacterized protein"... 279 3.0e-36 3
UNIPROTKB|I3LTT5 - symbol:SMARCA1 "Uncharacterized protei... 231 4.4e-36 3
ZFIN|ZDB-GENE-110411-274 - symbol:si:ch211-248d20.2 "si:c... 281 1.4e-35 3
UNIPROTKB|K7GNV1 - symbol:SMARCA1 "Uncharacterized protei... 231 1.8e-35 3
SGD|S000005816 - symbol:SNF2 "Catalytic subunit of the SW... 205 4.2e-35 3
ASPGD|ASPL0000042729 - symbol:AN2278 species:162425 "Emer... 203 5.6e-35 3
ZFIN|ZDB-GENE-060531-56 - symbol:ercc6l "excision repair ... 287 1.0e-34 2
UNIPROTKB|E1C0M8 - symbol:SMARCA5 "Uncharacterized protei... 215 1.0e-34 3
TAIR|locus:2040184 - symbol:PKL "PICKLE" species:3702 "Ar... 234 1.3e-34 3
MGI|MGI:1935129 - symbol:Smarca5 "SWI/SNF related, matrix... 217 1.4e-34 3
UNIPROTKB|F1N052 - symbol:SMARCA5 "Uncharacterized protei... 219 1.7e-34 3
UNIPROTKB|E2QWV0 - symbol:SMARCA5 "Uncharacterized protei... 219 1.7e-34 3
UNIPROTKB|F1RRG9 - symbol:SMARCA5 "Uncharacterized protei... 219 1.7e-34 3
TAIR|locus:2054011 - symbol:CHR8 "chromatin remodeling 8"... 258 2.3e-34 3
WARNING: Descriptions of 445 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|K7GSF7 [details] [associations]
symbol:LOC100514440 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 InterPro:IPR025766
PROSITE:PS51533 EMBL:CU928419 EMBL:CU693469 EMBL:CU928840
EMBL:FP102832 Ensembl:ENSSSCT00000036604 Uniprot:K7GSF7
Length = 2372
Score = 820 (293.7 bits), Expect = 3.9e-133, Sum P(5) = 3.9e-133
Identities = 177/428 (41%), Positives = 257/428 (60%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 540
L D +L ET+ + KE +ER K + + + KL + ++ I
Sbjct: 1439 LKDDKLRTETQNAL---KEEEERRKRIAEREREREKLREVIEIEDASPTKCPIT------ 1489
Query: 541 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 600
T +++ E E V++ ++ KLK HQV G++FMW+ +S++K K G GCILA
Sbjct: 1490 TKLVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCCESVKKTKKSP-GSGCILA 1548
Query: 601 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS--ELKPLRV 658
H MGLGKT QV++FL+T + L TAL+V P+N NW EF KW+ + + L V
Sbjct: 1549 HCMGLGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEV 1608
Query: 659 FMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD-GP 716
L V R + R+ +L +W+ GGV +IGY +RNL+ G++VK R + AL D GP
Sbjct: 1609 SELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGP 1668
Query: 717 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 776
D +VCDE H++KN + ++A+ ++ +RRI LTG+PLQNNL+EY+CMV+F++E LGS
Sbjct: 1669 DFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSI 1728
Query: 777 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
EFRNRF NPI+NGQ +ST DV++M +R+HILYE L G VQR D + K LPPK +
Sbjct: 1729 KEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEY 1788
Query: 837 VITVKLSPLQRRLYKRFLD-LHGFTNDRVSNE-KIRKSFFAGYQALAQIWNHPGILQLT- 893
V+ V+++P+Q +LY+ +LD L G N K F +Q L++IW HP LQL
Sbjct: 1789 VLAVRMTPIQCKLYQYYLDHLTGVGNSSEGGRGKAGAKLFQDFQMLSRIWTHPWCLQLDY 1848
Query: 894 ---KDKGY 898
++KGY
Sbjct: 1849 ISKENKGY 1856
Score = 352 (129.0 bits), Expect = 3.9e-133, Sum P(5) = 3.9e-133
Identities = 76/154 (49%), Positives = 104/154 (67%)
Query: 942 DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPR 1001
DW+ D + + + L++SGKMVLL +IL M +GDK LVFSQS+ +LDLIE +L R
Sbjct: 1956 DWYKDFVTDADAEVLEHSGKMVLLFEILRMAEEIGDKVLVFSQSLISLDLIEDFLELASR 2015
Query: 1002 PGKQGK----LWK-KGK-----DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRA 1051
+ K ++K +GK D+YRLDG T + R+K E FN+ N R + +IST+A
Sbjct: 2016 EKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKA 2075
Query: 1052 GSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWR 1085
GSLGINL +ANRVII D SWNP+YD+Q+I+R +R
Sbjct: 2076 GSLGINLVAANRVIIFDASWNPSYDIQSIFRVYR 2109
Score = 164 (62.8 bits), Expect = 3.9e-133, Sum P(5) = 3.9e-133
Identities = 42/144 (29%), Positives = 73/144 (50%)
Query: 307 DHSVSPENINDAATDNSLHSQSLSEK------FYCTAC----NNVAIE-VHPHPILNVIV 355
D +V+ E+ ++ ++N + QSL ++ CTAC N+ + ++ HP L V++
Sbjct: 99 DEAVN-EDASNENSENDITMQSLPKEDGLHGIVSCTACGQQVNHFQKDSIYRHPSLQVLI 157
Query: 356 CKDC-KCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSD 414
CK+C K + + +D+D + C WC +L+ C C FC C+ RN+ LS
Sbjct: 158 CKNCFKYYMSDDIS-RDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELST 216
Query: 415 EV-QASCWQCCCCSPS-LLKRLTS 436
+ + + W C C P LL +T+
Sbjct: 217 IMDENNQWYCYICHPEPLLDLVTA 240
Score = 60 (26.2 bits), Expect = 5.4e-28, Sum P(3) = 5.4e-28
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 340 NVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDAD-CSECYCVWCGRSSDLVS 390
N+ I++ PH + V DC C KK C +C+ G++ +VS
Sbjct: 1510 NMVIKLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVS 1561
Score = 52 (23.4 bits), Expect = 3.9e-133, Sum P(5) = 3.9e-133
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 197 SAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNG 250
S+ E+ + + N+ TD GNN+E+ + E G +S E+S S+G
Sbjct: 25 SSEESEETSSPPRLVMNQSTDKISGSGNNSEMMENSREEG---ASSSEKSKSSG 75
Score = 51 (23.0 bits), Expect = 4.7e-116, Sum P(3) = 4.7e-116
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 116 SGSVEEIEDVDGNSDDPFVADAIANE-KELALSEEQRKKFRKVKEEDDANMD 166
SG EE+ + + + P A E +E S +Q+KK R++K ++D++ +
Sbjct: 1349 SGVSEEVSESE-DEQRPRTRSAKKAELEENQRSYKQKKKRRRIKVQEDSSSE 1399
Score = 47 (21.6 bits), Expect = 1.8e-27, Sum P(3) = 1.8e-27
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 142 KELALSEEQRKKFRKVKEEDDAN 164
K +A E +R+K R+V E +DA+
Sbjct: 1460 KRIAEREREREKLREVIEIEDAS 1482
Score = 46 (21.3 bits), Expect = 3.9e-133, Sum P(5) = 3.9e-133
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 485 ELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMN 519
+L ++ K+KI ++ E+ ++ +FS K N
Sbjct: 250 QLLQQNKKKIKVDNEKSSKVYDHTPRFSPKKNSSN 284
Score = 46 (21.3 bits), Expect = 9.2e-117, Sum P(4) = 9.2e-117
Identities = 25/139 (17%), Positives = 57/139 (41%)
Query: 112 LCKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDXXXXX 171
L V+ + E D +S+D + E++ + + +KK K++++ +++ D
Sbjct: 921 LSDVAEKFSKKEQSDESSEDDKKQNKKGTEEKEKKTIDLKKKVIKMEQQYESSSDSTEKL 980
Query: 172 XXXXXXXXXISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGD-MPGNNNEVAL 230
SK + D T D + + + D + N+ +D+ + +PG +
Sbjct: 981 PEGEEICH-FSKGIKQNKSDTT--DREKKIKKIKDKTSKKKNELSDNAEKLPGKRDSCDS 1037
Query: 231 QNLETGVLESSVKERSLSN 249
+ E+S +E+ N
Sbjct: 1038 SEDKKSKNETSGREKKRCN 1056
Score = 45 (20.9 bits), Expect = 2.0e-38, Sum P(5) = 2.0e-38
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 712 LQDGPDILVCDEAHMIKNTRADTTQALKQVK 742
L +G +I C + IK ++DTT K++K
Sbjct: 980 LPEGEEI--CHFSKGIKQNKSDTTDREKKIK 1008
Score = 41 (19.5 bits), Expect = 3.5e-117, Sum P(4) = 3.5e-117
Identities = 13/51 (25%), Positives = 20/51 (39%)
Query: 183 KQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNL 233
K K GS + S V D K L +D + N++ +Q+L
Sbjct: 70 KSKSSGSSRSKRKPSIVTKYVESDDEKPLDEAVNEDASNENSENDITMQSL 120
Score = 41 (19.5 bits), Expect = 4.9e-26, Sum P(3) = 4.9e-26
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 414 DEVQASCWQCCCCSPSLLKR 433
D VQ W CCC S K+
Sbjct: 1521 DGVQFM-WDCCCESVKKTKK 1539
Score = 41 (19.5 bits), Expect = 4.9e-26, Sum P(3) = 4.9e-26
Identities = 23/118 (19%), Positives = 50/118 (42%)
Query: 700 KDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLM 759
+D + E C +G +++ CD H A + + + ++ ++ +NN
Sbjct: 172 RDSDGMDEQCRWCAEGGNLICCDFCH-----NAFCKKCILRNLGRKELSTIMD--ENN-- 222
Query: 760 EYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGF 817
++YC + E L + F+N +E Q + +K+ N++S +Y+ F
Sbjct: 223 QWYCYICHP-EPLLDLVTACNSVFEN-LE--QLLQQNKKKIKVDNEKSSKVYDHTPRF 276
Score = 40 (19.1 bits), Expect = 6.4e-38, Sum P(5) = 6.4e-38
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 780 RNRFQNPIENGQHTNSTSEDVKIMNQ 805
+ + QNP E+ + + +++K M++
Sbjct: 766 KKKRQNPSESSNYDSELEKEIKSMSK 791
Score = 39 (18.8 bits), Expect = 2.1e-132, Sum P(5) = 2.1e-132
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 483 DAELGEETKRKIAIEKERQERLKS------LQVQFSSKSKLMNSVT 522
D + G+ KR + +K+RQ +S L+ + S SK+ ++ T
Sbjct: 752 DIKKGKSAKRSMISKKKRQNPSESSNYDSELEKEIKSMSKIGSART 797
Score = 38 (18.4 bits), Expect = 1.1e-114, Sum P(3) = 1.1e-114
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 136 DAIANEKELALSEEQRKKFRKVKEE 160
D + E + AL EE+ ++ R + E
Sbjct: 1442 DKLRTETQNALKEEEERRKRIAERE 1466
Score = 38 (18.4 bits), Expect = 1.1e-114, Sum P(3) = 1.1e-114
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 134 VADAIANEKELALSEEQRKKFRKVKEEDDANMD 166
V + ++E + EE +++ + +EE+D N D
Sbjct: 1392 VQEDSSSENKSHSEEEDKEEEDEEEEEEDENDD 1424
Score = 37 (18.1 bits), Expect = 3.4e-132, Sum P(5) = 3.4e-132
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 481 LDDAELGEETKRKIAIEKERQER 503
+ D E GE+ K K KE + R
Sbjct: 1309 VSDGESGEDKKTKPKEHKEAKGR 1331
>UNIPROTKB|F1MQ85 [details] [associations]
symbol:ATRX "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070087 "chromo shadow domain binding" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0030900 GO:GO:0003682 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
OMA:GEGKWFR InterPro:IPR025766 PROSITE:PS51533 GO:GO:0000792
GO:GO:0000228 EMBL:DAAA02072507 EMBL:DAAA02072500 EMBL:DAAA02072501
EMBL:DAAA02072502 EMBL:DAAA02072503 EMBL:DAAA02072504
EMBL:DAAA02072505 EMBL:DAAA02072506 IPI:IPI01003328
Ensembl:ENSBTAT00000061308 ArrayExpress:F1MQ85 Uniprot:F1MQ85
Length = 2473
Score = 820 (293.7 bits), Expect = 3.9e-132, Sum P(5) = 3.9e-132
Identities = 177/428 (41%), Positives = 257/428 (60%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 540
L D +L ET+ + KE +ER K + + + KL + ++ I
Sbjct: 1464 LKDDKLRTETQNAL---KEEEERRKRIAEREREREKLREVIEIEDASPTKCPIT------ 1514
Query: 541 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 600
T +++ E E V++ ++ KLK HQV G++FMW+ +S++K K G GCILA
Sbjct: 1515 TKLVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCCESVKKTKKSP-GSGCILA 1573
Query: 601 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS--ELKPLRV 658
H MGLGKT QV++FL+T + L TAL+V P+N NW EF KW+ + + L V
Sbjct: 1574 HCMGLGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEV 1633
Query: 659 FMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD-GP 716
L V R + R+ +L +W+ GGV +IGY +RNL+ G++VK R + AL D GP
Sbjct: 1634 SELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGP 1693
Query: 717 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 776
D +VCDE H++KN + ++A+ ++ +RRI LTG+PLQNNL+EY+CMV+F++E LGS
Sbjct: 1694 DFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSI 1753
Query: 777 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
EFRNRF NPI+NGQ +ST DV++M +R+HILYE L G VQR D + K LPPK +
Sbjct: 1754 KEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEY 1813
Query: 837 VITVKLSPLQRRLYKRFLD-LHGFTNDRVSNE-KIRKSFFAGYQALAQIWNHPGILQLT- 893
V+ V+++P+Q +LY+ +LD L G N K F +Q L++IW HP LQL
Sbjct: 1814 VLAVRMTPIQCKLYQYYLDHLTGVGNSSEGGRGKAGAKLFQDFQMLSRIWTHPWCLQLDY 1873
Query: 894 ---KDKGY 898
++KGY
Sbjct: 1874 ISKENKGY 1881
Score = 352 (129.0 bits), Expect = 3.9e-132, Sum P(5) = 3.9e-132
Identities = 76/154 (49%), Positives = 104/154 (67%)
Query: 942 DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPR 1001
DW+ D + + + L++SGKMVLL +IL M +GDK LVFSQS+ +LDLIE +L R
Sbjct: 1981 DWYKDFVTDADAEVLEHSGKMVLLFEILRMAEEIGDKVLVFSQSLISLDLIEDFLELASR 2040
Query: 1002 PGKQGK----LWK-KGK-----DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRA 1051
+ K ++K +GK D+YRLDG T + R+K E FN+ N R + +IST+A
Sbjct: 2041 EKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKA 2100
Query: 1052 GSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWR 1085
GSLGINL +ANRVII D SWNP+YD+Q+I+R +R
Sbjct: 2101 GSLGINLVAANRVIIFDASWNPSYDIQSIFRVYR 2134
Score = 157 (60.3 bits), Expect = 3.9e-132, Sum P(5) = 3.9e-132
Identities = 35/110 (31%), Positives = 56/110 (50%)
Query: 335 CTAC----NNVAIE-VHPHPILNVIVCKDC-KCLLEKKMHVKDADCSECYCVWCGRSSDL 388
CTAC N+ + ++ HP L V++CK+C K + + +D+D + C WC +L
Sbjct: 165 CTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDIS-RDSDGMDEQCRWCAEGGNL 223
Query: 389 VSCKSCKTLFCTTCVKRNISEACLSDEV-QASCWQCCCCSPS-LLKRLTS 436
+ C C FC C+ RN+ LS + + + W C C P LL +T+
Sbjct: 224 ICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPLLDLVTA 273
Score = 60 (26.2 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 340 NVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDAD-CSECYCVWCGRSSDLVS 390
N+ I++ PH + V DC C KK C +C+ G++ +VS
Sbjct: 1535 NMVIKLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVS 1586
Score = 53 (23.7 bits), Expect = 3.3e-118, Sum P(4) = 3.3e-118
Identities = 42/175 (24%), Positives = 77/175 (44%)
Query: 5 CVFRRHGKLLEEGASGFLQ-KKIANDGSENGGKEVSDINWNSVNKIFSGDVSE-KCAAFG 62
C F + K + A G + KKI + S+ G E+SD + K S D SE K + G
Sbjct: 1017 CDFPKSIKQNKSSADGEKKCKKIKDKASKKKG-ELSDNSEKLPGKRESCDSSEDKRSKNG 1075
Query: 63 S-----KHWASVYLASTPQQAAAMG--LKFPGVDEVTDFSSNCPN---MWKFRSIITYRL 112
+ K + +S +Q + K+ ++ DFS P + + R++ + R
Sbjct: 1076 TSSREKKRFNLPEKSSRKRQDCSSSDTEKYSMKEDDCDFSDKRPKGIELRERRNLNSNRN 1135
Query: 113 CKV--SGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANM 165
K SGS ++E+ ++ + A+A +K ++ E+ R R + A++
Sbjct: 1136 SKEVQSGSSSDVEESSEDNKNLKKQRALAKKKAGSIKEKMRNSLRTSTKRKQADI 1190
Score = 52 (23.4 bits), Expect = 3.9e-132, Sum P(5) = 3.9e-132
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 197 SAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNG 250
S+ E+ + + N+ TD GNN+++ + E G +S E+S S+G
Sbjct: 20 SSEESEETSSPPRLVMNQSTDKASGSGNNSDMMENSREEG---ASSAEKSKSSG 70
Score = 51 (23.0 bits), Expect = 5.9e-116, Sum P(3) = 5.9e-116
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 116 SGSVEEIEDVDGNSDDPFVADAIANE-KELALSEEQRKKFRKVKEEDDANMD 166
SG EE+ + + + P A E +E S +Q+KK R++K ++D++ +
Sbjct: 1375 SGVSEEVSESE-DEQRPRTRSAKKAELEENQRSYKQKKKRRRIKVQEDSSSE 1425
Score = 48 (22.0 bits), Expect = 1.0e-131, Sum P(5) = 1.0e-131
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 183 KQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVL 238
K K GS + S V D K+L +D + N++ +Q+L G +
Sbjct: 65 KSKSSGSSRSKRKPSIVTKYVESDDEKTLDETVNEDASNENSENDITMQSLPKGTV 120
Score = 47 (21.6 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 142 KELALSEEQRKKFRKVKEEDDAN 164
K +A E +R+K R+V E +DA+
Sbjct: 1485 KRIAEREREREKLREVIEIEDAS 1507
Score = 46 (21.3 bits), Expect = 1.8e-117, Sum P(4) = 1.8e-117
Identities = 22/68 (32%), Positives = 30/68 (44%)
Query: 182 SKQKEIGSVDWTIEDSAVETRPLVDA-SKSLSNKKTDDGDMPGNNNEVALQNLETGVLES 240
SKQ EI VD I DS L D S S S+ TD + NN + ++ G +
Sbjct: 711 SKQSEI--VDH-ISDSDEMLTILKDMPSMSHSSSDTDINEPHTNNKKTFYSEIQRGKDDK 767
Query: 241 SVKERSLS 248
++R S
Sbjct: 768 RKRKRKSS 775
Score = 45 (20.9 bits), Expect = 3.9e-132, Sum P(5) = 3.9e-132
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 481 LDDAELGEETKRKIAIEKERQER 503
L D E GEE K K KE + R
Sbjct: 1335 LSDGESGEEKKMKPKEHKEAKSR 1357
Score = 45 (20.9 bits), Expect = 3.9e-132, Sum P(5) = 3.9e-132
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 485 ELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMN 519
+L ++ K+KI ++ E+ ++ +FS K N
Sbjct: 283 QLLQQNKKKIKVDNEKTSKVYEHAPRFSPKKNSSN 317
Score = 45 (20.9 bits), Expect = 2.3e-117, Sum P(4) = 2.3e-117
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 112 LCKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKF-RKVKEED 161
LC V+ E E D +S+D D ++KE+ E++ +KV E++
Sbjct: 953 LCDVAEKFSEKEQSDESSED----DNEQSKKEIEEKEKKTADLNKKVMEQE 999
Score = 45 (20.9 bits), Expect = 2.3e-117, Sum P(4) = 2.3e-117
Identities = 19/84 (22%), Positives = 34/84 (40%)
Query: 119 VEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKF--RKVKEEDDANMDXXXXXXXXXX 176
++++ + +S D + + N K+ SE QR K RK K + +
Sbjct: 730 LKDMPSMSHSSSDTDINEPHTNNKKTFYSEIQRGKDDKRKRKRKSSTSGSDFDIKKGKSV 789
Query: 177 XXXXISKQKEIGSVDWTIEDSAVE 200
ISK+K + + DS +E
Sbjct: 790 KKAIISKKKRQNQSESSNYDSELE 813
Score = 41 (19.5 bits), Expect = 1.2e-118, Sum P(5) = 1.2e-118
Identities = 24/138 (17%), Positives = 57/138 (41%)
Query: 115 VSGSVEEIEDV--DGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDXXXXXX 172
++ ++ ++ V + N+ + V DA +E ++ E+ RK + + +
Sbjct: 407 LNSEIQALDAVNKEKNTKEHKVIDA-KSETKVRKGEKPCVLERKDISKSEGKLSRKQVDS 465
Query: 173 XXXXXXXXISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQN 232
+ +Q+ + D T + + P + S + + D +P + E +N
Sbjct: 466 EHIGQSVAVEEQRAHKN-DSTEHKKSDKKEPQYEPSNTAEDLDMDIVSVPSSVPEDIFEN 524
Query: 233 LETGV-LESSVKERSLSN 249
LET + ++SS + + N
Sbjct: 525 LETAMEVQSSAEYQGDGN 542
Score = 41 (19.5 bits), Expect = 5.7e-26, Sum P(3) = 5.7e-26
Identities = 23/118 (19%), Positives = 50/118 (42%)
Query: 700 KDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLM 759
+D + E C +G +++ CD H A + + + ++ ++ +NN
Sbjct: 205 RDSDGMDEQCRWCAEGGNLICCDFCH-----NAFCKKCILRNLGRKELSTIMD--ENN-- 255
Query: 760 EYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGF 817
++YC + E L + F+N +E Q + +K+ N+++ +YE F
Sbjct: 256 QWYCYICHP-EPLLDLVTACNSVFEN-LE--QLLQQNKKKIKVDNEKTSKVYEHAPRF 309
Score = 41 (19.5 bits), Expect = 4.5e-25, Sum P(4) = 4.5e-25
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 414 DEVQASCWQCCCCSPSLLKR 433
D VQ W CCC S K+
Sbjct: 1546 DGVQFM-WDCCCESVKKTKK 1564
Score = 39 (18.8 bits), Expect = 1.6e-131, Sum P(5) = 1.6e-131
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 483 DAELGEETKRKIAIEKERQERLKS 506
D + G+ K+ I +K+RQ + +S
Sbjct: 782 DIKKGKSVKKAIISKKKRQNQSES 805
Score = 39 (18.8 bits), Expect = 8.5e-120, Sum P(5) = 8.5e-120
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 288 IIGSDEA-DVVKDECSTKLEDHSVSPENINDAATDN 322
I SDE ++KD S HS S +IN+ T+N
Sbjct: 720 ISDSDEMLTILKDMPSMS---HSSSDTDINEPHTNN 752
Score = 39 (18.8 bits), Expect = 1.1e-114, Sum P(3) = 1.1e-114
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 147 SEEQRKKFRKVKEEDDANMD 166
SEE +++ + EE+D N D
Sbjct: 1430 SEEDKEEDEEEDEEEDENDD 1449
Score = 38 (18.4 bits), Expect = 1.4e-114, Sum P(3) = 1.4e-114
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 136 DAIANEKELALSEEQRKKFRKVKEE 160
D + E + AL EE+ ++ R + E
Sbjct: 1467 DKLRTETQNALKEEEERRKRIAERE 1491
Score = 38 (18.4 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 24/106 (22%), Positives = 42/106 (39%)
Query: 136 DAIANEKELALSEEQRKKFRKVKEEDDANMDXXXXXXXXXXXXXXISKQKEIGSVDWTIE 195
D I+ E + E+ +F + D+ +M K K+ S +
Sbjct: 1872 DYISKENKGYFDEDSMDEFI-ASDSDETSMSLSSDDYTKKKKAKG-KKGKKDSSSSGSGS 1929
Query: 196 DSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESS 241
D+ VE + + S+S + + D GNN V+L+ E+ SS
Sbjct: 1930 DNDVEVIKVWN-SRSRGGGE-GNVDETGNNPSVSLKLEESKATSSS 1973
>UNIPROTKB|F1PKC1 [details] [associations]
symbol:ATRX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K10779 GeneTree:ENSGT00550000074619 CTD:546
OMA:GEGKWFR InterPro:IPR025766 PROSITE:PS51533 EMBL:AAEX03026550
EMBL:AAEX03026551 EMBL:AAEX03026552 EMBL:AAEX03026553
EMBL:AAEX03026554 EMBL:AAEX03026555 EMBL:AAEX03026556
RefSeq:XP_538084.2 Ensembl:ENSCAFT00000027324 GeneID:480963
KEGG:cfa:480963 Uniprot:F1PKC1
Length = 2489
Score = 821 (294.1 bits), Expect = 1.1e-131, Sum P(5) = 1.1e-131
Identities = 177/428 (41%), Positives = 257/428 (60%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 540
L D +L ET+ + KE +ER K + + + KL + ++ I
Sbjct: 1480 LKDDKLRTETQNAL---KEEEERRKRIAEREREREKLREVIEIEDASPTKCPIT------ 1530
Query: 541 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 600
T +++ E E V++ ++ KLK HQV G++FMW+ +S++K K G GCILA
Sbjct: 1531 TKLVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCCESVKKTKKSP-GSGCILA 1589
Query: 601 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS--ELKPLRV 658
H MGLGKT QV++FL+T + L TAL+V P+N NW EF KW+ + + L V
Sbjct: 1590 HCMGLGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEV 1649
Query: 659 FMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD-GP 716
L V R + R+ +L +W+ GGV +IGY +RNL+ G++VK R + AL D GP
Sbjct: 1650 SELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGP 1709
Query: 717 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 776
D +VCDE H++KN + ++A+ ++ +RRI LTG+PLQNNL+EY+CMV+F++E LGS
Sbjct: 1710 DFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSI 1769
Query: 777 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
EFRNRF NPI+NGQ +ST DV++M +R+HILYE L G VQR D + K LPPK +
Sbjct: 1770 KEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEY 1829
Query: 837 VITVKLSPLQRRLYKRFLD-LHGFTNDRVSNE-KIRKSFFAGYQALAQIWNHPGILQLT- 893
V+ V+++P+Q +LY+ +LD L G N K F +Q L++IW HP LQL
Sbjct: 1830 VLAVRMTPIQCKLYQYYLDHLTGVGNSNEGGRGKAGAKLFQDFQMLSRIWTHPWCLQLDY 1889
Query: 894 ---KDKGY 898
++KGY
Sbjct: 1890 ISKENKGY 1897
Score = 351 (128.6 bits), Expect = 1.1e-131, Sum P(5) = 1.1e-131
Identities = 76/154 (49%), Positives = 104/154 (67%)
Query: 942 DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPR 1001
DW+ D + + + L++SGKMVLL +IL M +GDK LVFSQS+ +LDLIE +L R
Sbjct: 1997 DWYKDFVTDADAEILEHSGKMVLLFEILRMAEEIGDKVLVFSQSLISLDLIEDFLELASR 2056
Query: 1002 PGKQGK----LWK-KGK-----DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRA 1051
+ K ++K +GK D+YRLDG T + R+K E FN+ N R + +IST+A
Sbjct: 2057 EKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKA 2116
Query: 1052 GSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWR 1085
GSLGINL +ANRVII D SWNP+YD+Q+I+R +R
Sbjct: 2117 GSLGINLVAANRVIIFDASWNPSYDIQSIFRVYR 2150
Score = 157 (60.3 bits), Expect = 1.1e-131, Sum P(5) = 1.1e-131
Identities = 35/110 (31%), Positives = 56/110 (50%)
Query: 335 CTAC----NNVAIE-VHPHPILNVIVCKDC-KCLLEKKMHVKDADCSECYCVWCGRSSDL 388
CTAC N+ + ++ HP L V++CK+C K + + +D+D + C WC +L
Sbjct: 170 CTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDIS-RDSDGMDEQCRWCAEGGNL 228
Query: 389 VSCKSCKTLFCTTCVKRNISEACLSDEV-QASCWQCCCCSPS-LLKRLTS 436
+ C C FC C+ RN+ LS + + + W C C P LL +T+
Sbjct: 229 ICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPLLDLVTA 278
Score = 60 (26.2 bits), Expect = 1.0e-27, Sum P(3) = 1.0e-27
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 340 NVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDAD-CSECYCVWCGRSSDLVS 390
N+ I++ PH + V DC C KK C +C+ G++ +VS
Sbjct: 1551 NMVIKLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVS 1602
Score = 51 (23.0 bits), Expect = 6.1e-116, Sum P(3) = 6.1e-116
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 116 SGSVEEIEDVDGNSDDPFVADAIANE-KELALSEEQRKKFRKVKEEDDANMD 166
SG EE+ + + + P A E +E S +Q+KK R++K ++D++ +
Sbjct: 1390 SGVSEEVSESE-DEQRPRTRSAKKAELEENQRSYKQKKKRRRIKVQEDSSSE 1440
Score = 50 (22.7 bits), Expect = 9.1e-118, Sum P(4) = 9.1e-118
Identities = 24/123 (19%), Positives = 49/123 (39%)
Query: 128 NSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDXXXXXXXXXXXXXXISKQKEI 187
N+ + V DA +E ++ E+ RK + +A + + +Q+
Sbjct: 427 NTKEHKVIDA-KSETKVRKGEKPGALERKDISKSEAKLSRKQVDSEHMDQSNTVQEQRAN 485
Query: 188 GSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGV-LESSVKERS 246
SV + S + P + + + + D +P + E +NLET + ++SS +
Sbjct: 486 KSVSGEHKKSDKKEEPQYEPANTSEDLDMDIVSVPSSVPEDIFENLETAMEVQSSTDNQG 545
Query: 247 LSN 249
N
Sbjct: 546 DGN 548
Score = 47 (21.6 bits), Expect = 1.1e-131, Sum P(5) = 1.1e-131
Identities = 14/56 (25%), Positives = 22/56 (39%)
Query: 183 KQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVL 238
K K GS + S V D K L +D + N++ +Q+L G +
Sbjct: 70 KSKSSGSSRSKRKPSVVTKYVESDDEKPLDETVNEDASNENSENDITMQSLPKGTV 125
Score = 47 (21.6 bits), Expect = 2.7e-27, Sum P(3) = 2.7e-27
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 142 KELALSEEQRKKFRKVKEEDDAN 164
K +A E +R+K R+V E +DA+
Sbjct: 1501 KRIAEREREREKLREVIEIEDAS 1523
Score = 46 (21.3 bits), Expect = 1.1e-131, Sum P(5) = 1.1e-131
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 485 ELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMN 519
+L ++ K+KI ++ E+ ++ +FS K N
Sbjct: 288 QLLQQNKKKIKVDNEKSNKVYDHTPRFSPKKNSSN 322
Score = 44 (20.5 bits), Expect = 1.7e-131, Sum P(5) = 1.7e-131
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 483 DAELGEETKRKIAIEKERQERLKS------LQVQFSSKSKL 517
D + G+ KR I +K+RQ + +S L+ + S SK+
Sbjct: 791 DIKKGKSAKRSIISKKKRQNQSESSNYDSELEKEIKSMSKI 831
Score = 44 (20.5 bits), Expect = 2.2e-131, Sum P(5) = 2.2e-131
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 197 SAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNG 250
S+ E+ + + N+ T+ GNN+++ + E G +S E+S S+G
Sbjct: 25 SSEESEETNSPPRLVMNQSTEKVGGSGNNSDMMENSKEEG---ASSSEKSKSSG 75
Score = 43 (20.2 bits), Expect = 1.5e-25, Sum P(3) = 1.5e-25
Identities = 23/118 (19%), Positives = 51/118 (43%)
Query: 700 KDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLM 759
+D + E C +G +++ CD H A + + + ++ ++ +NN
Sbjct: 210 RDSDGMDEQCRWCAEGGNLICCDFCH-----NAFCKKCILRNLGRKELSTIMD--ENN-- 260
Query: 760 EYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGF 817
++YC + E L + F+N +E Q + +K+ N++S+ +Y+ F
Sbjct: 261 QWYCYICHP-EPLLDLVTACNSVFEN-LE--QLLQQNKKKIKVDNEKSNKVYDHTPRF 314
Score = 41 (19.5 bits), Expect = 9.6e-26, Sum P(3) = 9.6e-26
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 414 DEVQASCWQCCCCSPSLLKR 433
D VQ W CCC S K+
Sbjct: 1562 DGVQFM-WDCCCESVKKTKK 1580
Score = 40 (19.1 bits), Expect = 4.6e-131, Sum P(5) = 4.6e-131
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 481 LDDAELGEETKRKIAIEKERQER 503
+ D E GEE K K KE + R
Sbjct: 1350 VSDGESGEEKKMKPKEHKEAKGR 1372
Score = 39 (18.8 bits), Expect = 3.4e-116, Sum P(4) = 3.4e-116
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 135 ADAIANEKELALSEEQRKKFRKVKEE 160
AD + + KE + + + KK + KE+
Sbjct: 921 ADKLPSGKEASFNSPEDKKVAETKEK 946
Score = 38 (18.4 bits), Expect = 1.4e-114, Sum P(3) = 1.4e-114
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 136 DAIANEKELALSEEQRKKFRKVKEE 160
D + E + AL EE+ ++ R + E
Sbjct: 1483 DKLRTETQNALKEEEERRKRIAERE 1507
Score = 37 (18.1 bits), Expect = 1.8e-114, Sum P(3) = 1.8e-114
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 116 SGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQ-RKKFRKVKEED 161
S S + + DD + +E + + S + RKK RK+ ++D
Sbjct: 1437 SSSENKSNSEEDKEDDEEEEEEEEDENDDSKSPGKGRKKIRKILKDD 1483
>UNIPROTKB|F1LM36 [details] [associations]
symbol:F1LM36 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 InterPro:IPR025766
PROSITE:PS51533 IPI:IPI00958931 Ensembl:ENSRNOT00000042751
ArrayExpress:F1LM36 Uniprot:F1LM36
Length = 2467
Score = 818 (293.0 bits), Expect = 2.1e-131, Sum P(5) = 2.1e-131
Identities = 177/428 (41%), Positives = 257/428 (60%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 540
L D +L ET+ + KE +ER K + + + KL + ++ I
Sbjct: 1461 LKDDKLRTETQNAL---KEEEERRKRIAEREREREKLREVIEIEDASPTKCPIT------ 1511
Query: 541 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 600
T +++ E E V++ ++ KLK HQV G++FMW+ +S++K K G GCILA
Sbjct: 1512 TKLVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCCESVKKTKKSP-GSGCILA 1570
Query: 601 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP--SELKPLRV 658
H MGLGKT QV++FL+T + L TAL+V P+N NW EF KW+ ++ + L V
Sbjct: 1571 HCMGLGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLNDAEKLEV 1630
Query: 659 FMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD-GP 716
L V R + R+ +L +W+ GGV +IGY +RNL+ G++VK R + AL D GP
Sbjct: 1631 SELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGP 1690
Query: 717 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 776
D +VCDE H++KN + ++A+ +K +RRI LTG+PLQNNL+EY+CMV+F++E LGS
Sbjct: 1691 DFVVCDEGHILKNEASAVSKAMNSIKSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSI 1750
Query: 777 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
EFRNRF NPI+NGQ +ST DV++M +R+HILYE L G VQR D + K LPPK +
Sbjct: 1751 KEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEY 1810
Query: 837 VITVKLSPLQRRLYKRFLD-LHGFTNDRVSNE-KIRKSFFAGYQALAQIWNHPGILQLT- 893
V+ V+++ +Q +LY+ +LD L G N K F +Q L++IW HP LQL
Sbjct: 1811 VLAVRMTAIQCKLYQYYLDHLTGNNNSTDGGRGKAGAKLFQDFQMLSRIWTHPWCLQLDY 1870
Query: 894 ---KDKGY 898
++KGY
Sbjct: 1871 ISKENKGY 1878
Score = 353 (129.3 bits), Expect = 2.1e-131, Sum P(5) = 2.1e-131
Identities = 76/154 (49%), Positives = 104/154 (67%)
Query: 942 DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPR 1001
DW+ D + + + L++SGKMVLL +IL M +GDK LVFSQS+ +LDLIE +L R
Sbjct: 1975 DWYKDFVTDADAEVLEHSGKMVLLFEILRMAEEIGDKVLVFSQSLISLDLIEDFLELASR 2034
Query: 1002 PGKQGK----LWK-KGK-----DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRA 1051
+ K ++K +GK D+YRLDG T + R+K E FN+ N R + +IST+A
Sbjct: 2035 EKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRLFIISTKA 2094
Query: 1052 GSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWR 1085
GSLGINL +ANRVII D SWNP+YD+Q+I+R +R
Sbjct: 2095 GSLGINLVAANRVIIFDASWNPSYDIQSIFRVYR 2128
Score = 158 (60.7 bits), Expect = 2.1e-131, Sum P(5) = 2.1e-131
Identities = 35/110 (31%), Positives = 56/110 (50%)
Query: 335 CTAC----NNVAIE-VHPHPILNVIVCKDC-KCLLEKKMHVKDADCSECYCVWCGRSSDL 388
CTAC N+ + ++ HP L V++CK+C K + + +D+D + C WC +L
Sbjct: 170 CTACGQQVNHFQKDSIYRHPSLKVLICKNCFKYYMSDDIS-RDSDGMDEQCRWCAEGGNL 228
Query: 389 VSCKSCKTLFCTTCVKRNISEACLSDEV-QASCWQCCCCSPS-LLKRLTS 436
+ C C FC C+ RN+ LS + + + W C C P LL +T+
Sbjct: 229 ICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICQPEPLLDLVTA 278
Score = 60 (26.2 bits), Expect = 2.4e-28, Sum P(3) = 2.4e-28
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 340 NVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDAD-CSECYCVWCGRSSDLVS 390
N+ I++ PH + V DC C KK C +C+ G++ +VS
Sbjct: 1532 NMVIKLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVS 1583
Score = 55 (24.4 bits), Expect = 2.8e-116, Sum P(3) = 2.8e-116
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 116 SGSVEEIEDVDGNSDDPFVADAIANE-KELALSEEQRKKFRKVKEEDDANMD 166
SG EE+ + + + P A E +E S +Q+KK R++K ++D++ D
Sbjct: 1370 SGVSEEVSESE-DEQRPRTRSAKKAELEENQRSYKQKKKRRRIKVQEDSSSD 1420
Score = 52 (23.4 bits), Expect = 3.5e-27, Sum P(2) = 3.5e-27
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 126 DGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDAN 164
D +S D F+A ++E ++LS +++KK + K D++
Sbjct: 1880 DEDSMDEFIASD-SDETSMSLSSDEKKKTKGKKGRKDSS 1917
Score = 47 (21.6 bits), Expect = 2.1e-131, Sum P(5) = 2.1e-131
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 197 SAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNG 250
S+ E+ + + + N+ TD G N+++ + E G +S E+S S+G
Sbjct: 25 SSEESEETCSSPRLVMNQSTDKISASGLNSDMMENSKEEG---TSTSEKSKSSG 75
Score = 47 (21.6 bits), Expect = 1.6e-27, Sum P(3) = 1.6e-27
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 142 KELALSEEQRKKFRKVKEEDDAN 164
K +A E +R+K R+V E +DA+
Sbjct: 1482 KRIAEREREREKLREVIEIEDAS 1504
Score = 46 (21.3 bits), Expect = 4.2e-37, Sum P(5) = 4.2e-37
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 485 ELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGD 526
+L ++ K+KI ++ E+ ++ +FS K NS + +G+
Sbjct: 288 QLLQQNKKKIKVDSEKTSKVCDQTSKFSPKK---NSSSCNGE 326
Score = 43 (20.2 bits), Expect = 2.1e-131, Sum P(5) = 2.1e-131
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 481 LDDAELGEETKRKIAIEKERQER 503
L D E GEE K K KE + R
Sbjct: 1330 LSDGESGEEKKTKPKEHKETKGR 1352
Score = 43 (20.2 bits), Expect = 4.2e-37, Sum P(5) = 4.2e-37
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 721 CDEAHMIKNTRADTTQALKQVKCQRR 746
C EA KN R + A KC+ R
Sbjct: 592 CQEAPQEKNARKSSGVARSSEKCRPR 617
Score = 41 (19.5 bits), Expect = 2.2e-26, Sum P(3) = 2.2e-26
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 414 DEVQASCWQCCCCSPSLLKR 433
D VQ W CCC S K+
Sbjct: 1543 DGVQFM-WDCCCESVKKTKK 1561
Score = 40 (19.1 bits), Expect = 1.1e-114, Sum P(3) = 1.1e-114
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 116 SGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEED 161
S S EE +D D + +D D + K + RKK RK+ ++D
Sbjct: 1423 SHSEEERKD-DDDEEDEEEEDENDDSKSPG---KGRKKIRKILKDD 1464
Score = 38 (18.4 bits), Expect = 1.7e-114, Sum P(3) = 1.7e-114
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 136 DAIANEKELALSEEQRKKFRKVKEE 160
D + E + AL EE+ ++ R + E
Sbjct: 1464 DKLRTETQNALKEEEERRKRIAERE 1488
Score = 38 (18.4 bits), Expect = 3.0e-25, Sum P(3) = 3.0e-25
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 700 KDRNMAREICHALQDGPDILVCDEAH 725
+D + E C +G +++ CD H
Sbjct: 210 RDSDGMDEQCRWCAEGGNLICCDFCH 235
>MGI|MGI:103067 [details] [associations]
symbol:Atrx "alpha thalassemia/mental retardation syndrome
X-linked homolog (human)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000228 "nuclear chromosome"
evidence=IDA] [GO:0000792 "heterochromatin" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0070087 "chromo shadow domain
binding" evidence=ISO] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 MGI:MGI:103067 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0030900 GO:GO:0003682 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10779
GeneTree:ENSGT00550000074619 CTD:546 HOVERGEN:HBG000104
OrthoDB:EOG4PVNXQ InterPro:IPR025766 PROSITE:PS51533 EMBL:AF026032
EMBL:AL671893 EMBL:AL670660 EMBL:X99643 IPI:IPI00322707
RefSeq:NP_033556.2 UniGene:Mm.10141 ProteinModelPortal:Q61687
SMR:Q61687 IntAct:Q61687 STRING:Q61687 PhosphoSite:Q61687
PaxDb:Q61687 PRIDE:Q61687 Ensembl:ENSMUST00000113573 GeneID:22589
KEGG:mmu:22589 HOGENOM:HOG000231302 InParanoid:A2ADH4
NextBio:302925 Bgee:Q61687 Genevestigator:Q61687
GermOnline:ENSMUSG00000031229 GO:GO:0000792 GO:GO:0000228
Uniprot:Q61687
Length = 2476
Score = 813 (291.2 bits), Expect = 9.3e-131, Sum P(5) = 9.3e-131
Identities = 177/428 (41%), Positives = 256/428 (59%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 540
L D +L ET+ + KE +ER K + + + KL + ++ I
Sbjct: 1469 LKDDKLRTETQNAL---KEEEERRKRIAEREREREKLREVIEIEDASPTKCPIT------ 1519
Query: 541 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 600
T +++ E E V++ ++ KLK HQV G++FMW+ +S+ K K G GCILA
Sbjct: 1520 TKLVLDENEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCCESVEKTKKSP-GSGCILA 1578
Query: 601 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP--SELKPLRV 658
H MGLGKT QV++FL+T + L TAL+V P+N NW EF KW+ ++ + L V
Sbjct: 1579 HCMGLGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLNDNEKLEV 1638
Query: 659 FMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD-GP 716
L V R + R+ +L +W+ GGV +IGY +RNL+ G++VK R + AL D GP
Sbjct: 1639 SELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKDIFNKALVDPGP 1698
Query: 717 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 776
D +VCDE H++KN + ++A+ +K +RRI LTG+PLQNNL+EY+CMV+F++E LGS
Sbjct: 1699 DFVVCDEGHILKNEASAVSKAMNSIKSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSI 1758
Query: 777 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
EFRNRF NPI+NGQ +ST DV++M +R+HILYE L G VQR D + K LPPK +
Sbjct: 1759 KEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEY 1818
Query: 837 VITVKLSPLQRRLYKRFLD-LHGFTNDRVSNE-KIRKSFFAGYQALAQIWNHPGILQLT- 893
V+ V+++ +Q +LY+ +LD L G N K F +Q L++IW HP LQL
Sbjct: 1819 VLAVRMTAIQCKLYQYYLDHLTGVGNSTEGGRGKAGAKLFQDFQMLSRIWTHPWCLQLDY 1878
Query: 894 ---KDKGY 898
++KGY
Sbjct: 1879 ISKENKGY 1886
Score = 353 (129.3 bits), Expect = 9.3e-131, Sum P(5) = 9.3e-131
Identities = 76/154 (49%), Positives = 104/154 (67%)
Query: 942 DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPR 1001
DW+ D + + + L++SGKMVLL +IL M +GDK LVFSQS+ +LDLIE +L R
Sbjct: 1983 DWYKDFVTDTDAEVLEHSGKMVLLFEILRMAEEIGDKVLVFSQSLISLDLIEDFLELASR 2042
Query: 1002 PGKQGK----LWK-KGK-----DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRA 1051
+ K ++K +GK D+YRLDG T + R+K E FN+ N R + +IST+A
Sbjct: 2043 EKTEDKEKPLIYKGEGKWIRNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRLFIISTKA 2102
Query: 1052 GSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWR 1085
GSLGINL +ANRVII D SWNP+YD+Q+I+R +R
Sbjct: 2103 GSLGINLVAANRVIIFDASWNPSYDIQSIFRVYR 2136
Score = 158 (60.7 bits), Expect = 9.3e-131, Sum P(5) = 9.3e-131
Identities = 35/110 (31%), Positives = 56/110 (50%)
Query: 335 CTAC----NNVAIE-VHPHPILNVIVCKDC-KCLLEKKMHVKDADCSECYCVWCGRSSDL 388
CTAC N+ + ++ HP L V++CK+C K + + +D+D + C WC +L
Sbjct: 170 CTACGQQVNHFQKDSIYRHPSLKVLICKNCFKYYMSDDIS-RDSDGMDEQCRWCAEGGNL 228
Query: 389 VSCKSCKTLFCTTCVKRNISEACLSDEV-QASCWQCCCCSPS-LLKRLTS 436
+ C C FC C+ RN+ LS + + + W C C P LL +T+
Sbjct: 229 ICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICQPEPLLDLVTA 278
Score = 64 (27.6 bits), Expect = 2.4e-28, Sum P(3) = 2.4e-28
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 340 NVAIEVHPHPILNVIVCKDCKC-LLEKKMHVKDADCSECYCVWCGRSSDLVS 390
N+ I++ PH + V DC C +EK + C +C+ G++ +VS
Sbjct: 1540 NMVIKLKPHQVDGVQFMWDCCCESVEKTKKSPGSGCILAHCMGLGKTLQVVS 1591
Score = 56 (24.8 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 126 DGNSDDPFVA-DAIANEKELALSEEQRKKFRKVKEEDDANMDXXXXXXXXXXXXXXISKQ 184
D +S D F+A D+ K L+ E+++ K +K K++ ++ S+
Sbjct: 1888 DEDSMDEFIASDSDETSKSLSSDEKKKPKGKKGKKDSSSSGSGSDNDVEVIKVWNSRSRG 1947
Query: 185 KEIGSVDWTIEDSAVETRPLVDASKSLS 212
G+VD T + +V + +D SK+ S
Sbjct: 1948 GGDGNVDDTGNNPSVSLK--LDESKTTS 1973
Score = 51 (23.0 bits), Expect = 2.6e-115, Sum P(3) = 2.6e-115
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 116 SGSVEEIEDVDGNSDDPFVADAIANE-KELALSEEQRKKFRKVKEEDDANMD 166
SG EE+ + + + P A E +E S +Q+KK R++K ++D++ +
Sbjct: 1374 SGVSEEVSESE-DEQRPRTRSAKKAELEENQRSYKQKKKRRRIKVQEDSSSE 1424
Score = 47 (21.6 bits), Expect = 9.3e-131, Sum P(5) = 9.3e-131
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 197 SAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNG 250
S+ E+ + + + N+ TD G N+++ N E G +S E+S S+G
Sbjct: 25 SSEESEETCSSPRLVMNQSTDKICGSGLNSDMMENNKEEG---ASTSEKSRSSG 75
Score = 47 (21.6 bits), Expect = 6.2e-28, Sum P(3) = 6.2e-28
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 142 KELALSEEQRKKFRKVKEEDDAN 164
K +A E +R+K R+V E +DA+
Sbjct: 1490 KRIAEREREREKLREVIEIEDAS 1512
Score = 42 (19.8 bits), Expect = 9.3e-131, Sum P(5) = 9.3e-131
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 485 ELGEETKRKIAIEKERQERLKSLQVQFSSK 514
+L ++ K+KI ++ E+ ++ +FS K
Sbjct: 288 QLLQQNKKKIKVDSEKTSKVCDQTSKFSPK 317
Score = 42 (19.8 bits), Expect = 1.4e-36, Sum P(5) = 1.4e-36
Identities = 21/86 (24%), Positives = 36/86 (41%)
Query: 721 CDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFR 780
C E KN R + A KC+ R + S +NN+ D R + ++ R
Sbjct: 597 CQEVSQEKNGRKSSGVARSSEKCRPREEI--SDHENNVTILLEDSDLRRSPRVKTTPLRR 654
Query: 781 NRFQNP-IENG-QHTNSTSEDVKIMN 804
NP + N + +N T ++ + M+
Sbjct: 655 QTESNPAMSNSDEESNGTMKEKQKMS 680
Score = 41 (19.5 bits), Expect = 5.7e-26, Sum P(3) = 5.7e-26
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 414 DEVQASCWQCCCCSPSLLKR 433
D VQ W CCC S K+
Sbjct: 1551 DGVQFM-WDCCCESVEKTKK 1569
Score = 39 (18.8 bits), Expect = 4.7e-114, Sum P(3) = 4.7e-114
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 114 KVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEED 161
K G E+ ED D + +D N+ + + RKK RK+ ++D
Sbjct: 1433 KKEGDEEDEEDEDEDEEDE-------NDDSKSPGKG-RKKIRKILKDD 1472
Score = 38 (18.4 bits), Expect = 6.0e-114, Sum P(3) = 6.0e-114
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 136 DAIANEKELALSEEQRKKFRKVKEE 160
D + E + AL EE+ ++ R + E
Sbjct: 1472 DKLRTETQNALKEEEERRKRIAERE 1496
Score = 38 (18.4 bits), Expect = 1.2e-24, Sum P(4) = 1.2e-24
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 700 KDRNMAREICHALQDGPDILVCDEAH 725
+D + E C +G +++ CD H
Sbjct: 210 RDSDGMDEQCRWCAEGGNLICCDFCH 235
Score = 37 (18.1 bits), Expect = 3.1e-130, Sum P(5) = 3.1e-130
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 481 LDDAELGEETKRKIAIEKERQER 503
L D E GEE K KE + R
Sbjct: 1334 LSDGESGEEKPTKPKEHKEAKGR 1356
>UNIPROTKB|P46100 [details] [associations]
symbol:ATRX "Transcriptional regulator ATRX" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=TAS] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0005634 "nucleus" evidence=TAS] [GO:0005720 "nuclear
heterochromatin" evidence=TAS] [GO:0006306 "DNA methylation"
evidence=TAS] [GO:0006310 "DNA recombination" evidence=TAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0070087 "chromo shadow domain binding" evidence=IPI]
[GO:0032508 "DNA duplex unwinding" evidence=TAS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005720 GO:GO:0030900 GO:GO:0003682
GO:GO:0006310 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0006306 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
DrugBank:DB00144 EMBL:CH471104 KO:K10779 EMBL:U72937 EMBL:U72938
EMBL:U72935 EMBL:U72904 EMBL:U72905 EMBL:U72907 EMBL:U72908
EMBL:U72909 EMBL:U72910 EMBL:U72911 EMBL:U72912 EMBL:U72913
EMBL:U72914 EMBL:U72915 EMBL:U72916 EMBL:U72917 EMBL:U72918
EMBL:U72919 EMBL:U72920 EMBL:U72921 EMBL:U72922 EMBL:U72923
EMBL:U72924 EMBL:U72925 EMBL:U72926 EMBL:U72927 EMBL:U72928
EMBL:U72929 EMBL:U72930 EMBL:U72931 EMBL:U72932 EMBL:U72933
EMBL:U72934 EMBL:U72936 EMBL:U75653 EMBL:U97103 EMBL:AF000157
EMBL:AF000158 EMBL:AF000159 EMBL:AF000160 EMBL:U97080 EMBL:U97081
EMBL:U97082 EMBL:U97083 EMBL:U97084 EMBL:U97085 EMBL:U97086
EMBL:U97087 EMBL:U97088 EMBL:U97089 EMBL:U97090 EMBL:U97091
EMBL:U97092 EMBL:U97093 EMBL:U97094 EMBL:U97095 EMBL:U97096
EMBL:U97097 EMBL:U97098 EMBL:U97099 EMBL:U97100 EMBL:U97101
EMBL:U97102 EMBL:AB102641 EMBL:AB101681 EMBL:AB101682 EMBL:AB101683
EMBL:AB101685 EMBL:AB101687 EMBL:AB101689 EMBL:AB101691
EMBL:AB101693 EMBL:AB101695 EMBL:AB101700 EMBL:AB101699
EMBL:AB101698 EMBL:AB101697 EMBL:AB101696 EMBL:AB101694
EMBL:AB101692 EMBL:AB101690 EMBL:AB101688 EMBL:AB101686
EMBL:AB101684 EMBL:AB208928 EMBL:AB209545 EMBL:AL121874
EMBL:AL109753 EMBL:Z84487 EMBL:U09820 EMBL:L34363 EMBL:X83753
IPI:IPI00220109 IPI:IPI00297633 IPI:IPI00845355 IPI:IPI00883721
IPI:IPI00938010 IPI:IPI00940810 PIR:I38614 PIR:I54367
RefSeq:NP_000480.2 RefSeq:NP_612114.1 UniGene:Hs.533526
UniGene:Hs.653797 PDB:2JM1 PDB:2LBM PDB:2LD1 PDB:3QL9 PDB:3QLA
PDB:3QLC PDB:3QLN PDBsum:2JM1 PDBsum:2LBM PDBsum:2LD1 PDBsum:3QL9
PDBsum:3QLA PDBsum:3QLC PDBsum:3QLN ProteinModelPortal:P46100
SMR:P46100 DIP:DIP-31532N IntAct:P46100 MINT:MINT-1186201
STRING:P46100 PhosphoSite:P46100 DMDM:311033500 PaxDb:P46100
PRIDE:P46100 DNASU:546 Ensembl:ENST00000373344
Ensembl:ENST00000395603 GeneID:546 KEGG:hsa:546 UCSC:uc004eco.4
UCSC:uc004ecq.4 UCSC:uc004ecr.2 CTD:546 GeneCards:GC0XM076760
H-InvDB:HIX0176765 HGNC:HGNC:886 HPA:CAB009372 HPA:HPA001906
MIM:300032 MIM:300448 MIM:301040 MIM:309580 neXtProt:NX_P46100
Orphanet:847 Orphanet:231401 Orphanet:93973 Orphanet:93971
Orphanet:93970 Orphanet:93972 Orphanet:93974 Orphanet:3423
PharmGKB:PA25179 HOVERGEN:HBG000104 InParanoid:P46100 OMA:GEGKWFR
OrthoDB:EOG4PVNXQ PhylomeDB:P46100 EvolutionaryTrace:P46100
GenomeRNAi:546 NextBio:2259 ArrayExpress:P46100 Bgee:P46100
CleanEx:HS_RAD54L Genevestigator:P46100 GermOnline:ENSG00000085224
InterPro:IPR025766 PROSITE:PS51533 Uniprot:P46100
Length = 2492
Score = 813 (291.2 bits), Expect = 2.6e-130, Sum P(5) = 2.6e-130
Identities = 176/428 (41%), Positives = 257/428 (60%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 540
L D +L ET+ + KE +ER K + + + KL + ++ I
Sbjct: 1484 LKDDKLRTETQNAL---KEEEERRKRIAEREREREKLREVIEIEDASPTKCPIT------ 1534
Query: 541 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 600
T +++ E E V++ ++ KLK HQV G++FMW+ +S++K K G GCILA
Sbjct: 1535 TKLVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCCESVKKTKKSP-GSGCILA 1593
Query: 601 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS--ELKPLRV 658
H MGLGKT QV++FL+T + L TAL+V P+N NW EF KW+ + + L V
Sbjct: 1594 HCMGLGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEV 1653
Query: 659 FMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD-GP 716
L V R + R+ +L +W+ GGV +IGY +RNL+ G++VK R + AL D GP
Sbjct: 1654 SELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGP 1713
Query: 717 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 776
D +VCDE H++KN + ++A+ ++ +RRI LTG+PLQNNL+EY+CMV+F++E LGS
Sbjct: 1714 DFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSI 1773
Query: 777 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
EFRNRF NPI+NGQ +ST DV++M +R+HILYE L G VQR D + K LPPK +
Sbjct: 1774 KEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEY 1833
Query: 837 VITVKLSPLQRRLYKRFLD-LHGFTNDRVSNE-KIRKSFFAGYQALAQIWNHPGILQLT- 893
V+ V+++ +Q +LY+ +LD L G N+ K F +Q L++IW HP LQL
Sbjct: 1834 VLAVRMTSIQCKLYQYYLDHLTGVGNNSEGGRGKAGAKLFQDFQMLSRIWTHPWCLQLDY 1893
Query: 894 ---KDKGY 898
++KGY
Sbjct: 1894 ISKENKGY 1901
Score = 352 (129.0 bits), Expect = 2.6e-130, Sum P(5) = 2.6e-130
Identities = 76/154 (49%), Positives = 104/154 (67%)
Query: 942 DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPR 1001
DW+ D + + + L++SGKMVLL +IL M +GDK LVFSQS+ +LDLIE +L R
Sbjct: 2000 DWYKDFVTDADAEVLEHSGKMVLLFEILRMAEEIGDKVLVFSQSLISLDLIEDFLELASR 2059
Query: 1002 PGKQGK----LWK-KGK-----DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRA 1051
+ K ++K +GK D+YRLDG T + R+K E FN+ N R + +IST+A
Sbjct: 2060 EKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKA 2119
Query: 1052 GSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWR 1085
GSLGINL +ANRVII D SWNP+YD+Q+I+R +R
Sbjct: 2120 GSLGINLVAANRVIIFDASWNPSYDIQSIFRVYR 2153
Score = 157 (60.3 bits), Expect = 2.6e-130, Sum P(5) = 2.6e-130
Identities = 35/110 (31%), Positives = 56/110 (50%)
Query: 335 CTAC----NNVAIE-VHPHPILNVIVCKDC-KCLLEKKMHVKDADCSECYCVWCGRSSDL 388
CTAC N+ + ++ HP L V++CK+C K + + +D+D + C WC +L
Sbjct: 171 CTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDIS-RDSDGMDEQCRWCAEGGNL 229
Query: 389 VSCKSCKTLFCTTCVKRNISEACLSDEV-QASCWQCCCCSPS-LLKRLTS 436
+ C C FC C+ RN+ LS + + + W C C P LL +T+
Sbjct: 230 ICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPLLDLVTA 279
Score = 60 (26.2 bits), Expect = 8.1e-28, Sum P(3) = 8.1e-28
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 340 NVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDAD-CSECYCVWCGRSSDLVS 390
N+ I++ PH + V DC C KK C +C+ G++ +VS
Sbjct: 1555 NMVIKLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVS 1606
Score = 51 (23.0 bits), Expect = 3.4e-115, Sum P(3) = 3.4e-115
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 116 SGSVEEIEDVDGNSDDPFVADAIANE-KELALSEEQRKKFRKVKEEDDANMD 166
SG EE+ + + + P A E +E S +Q+KK R++K ++D++ +
Sbjct: 1387 SGVSEEVSESE-DEQRPRTRSAKKAELEENQRSYKQKKKRRRIKVQEDSSSE 1437
Score = 47 (21.6 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 142 KELALSEEQRKKFRKVKEEDDAN 164
K +A E +R+K R+V E +DA+
Sbjct: 1505 KRIAEREREREKLREVIEIEDAS 1527
Score = 45 (20.9 bits), Expect = 2.6e-130, Sum P(5) = 2.6e-130
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 485 ELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMN 519
+L ++ K+KI ++ E+ ++ +FS K N
Sbjct: 289 QLLQQNKKKIKVDSEKSNKVYEHTSRFSPKKTSSN 323
Score = 43 (20.2 bits), Expect = 2.4e-114, Sum P(3) = 2.4e-114
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 139 ANEKELALSEEQRKKFRKVKEEDDANMD 166
+ E+E EE+ ++ + +EE+D N D
Sbjct: 1442 SEEEEEEKEEEEEEEEEEEEEEEDENDD 1469
Score = 42 (19.8 bits), Expect = 2.6e-130, Sum P(5) = 2.6e-130
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 197 SAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNG 250
S+ E+ + N+ TD G+N+++ + E G +S E+S S+G
Sbjct: 25 SSEESEETSSPPRLAMNQNTDKISGSGSNSDMMENSKEEG---TSSSEKSKSSG 75
Score = 42 (19.8 bits), Expect = 5.0e-25, Sum P(3) = 5.0e-25
Identities = 23/118 (19%), Positives = 51/118 (43%)
Query: 700 KDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLM 759
+D + E C +G +++ CD H A + + + ++ ++ +NN
Sbjct: 211 RDSDGMDEQCRWCAEGGNLICCDFCH-----NAFCKKCILRNLGRKELSTIMD--ENN-- 261
Query: 760 EYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGF 817
++YC + E L + F+N +E Q + +K+ +++S+ +YE F
Sbjct: 262 QWYCYICHP-EPLLDLVTACNSVFEN-LE--QLLQQNKKKIKVDSEKSNKVYEHTSRF 315
Score = 41 (19.5 bits), Expect = 3.3e-130, Sum P(5) = 3.3e-130
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 183 KQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKT-DDGDMPGNNNEVALQNLETGVL 238
K K GS + S V D K L ++ +D + N++ +Q+L G +
Sbjct: 70 KSKSSGSSRSKRKPSIVTKYVESDDEKPLDDETVNEDASNENSENDITMQSLPKGTV 126
Score = 41 (19.5 bits), Expect = 4.0e-36, Sum P(4) = 4.0e-36
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLS-AGASIEV 535
+ D E GEE K K KE +E V+ ++ K+ + + D D +G S EV
Sbjct: 1347 VSDGESGEEKKTK---PKEHKE------VKGRNRRKVSSEDSEDSDFQESGVSEEV 1393
Score = 41 (19.5 bits), Expect = 7.5e-26, Sum P(3) = 7.5e-26
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 414 DEVQASCWQCCCCSPSLLKR 433
D VQ W CCC S K+
Sbjct: 1566 DGVQFM-WDCCCESVKKTKK 1584
Score = 38 (18.4 bits), Expect = 1.4e-129, Sum P(5) = 1.4e-129
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 483 DAELGEETKRKIAIEKERQERLKS------LQVQFSSKSKL 517
D + G+ K I +K+RQ + +S L+ + S SK+
Sbjct: 791 DTKKGKSAKSSIISKKKRQTQSESSNYDSELEKEIKSMSKI 831
Score = 38 (18.4 bits), Expect = 7.9e-114, Sum P(3) = 7.9e-114
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 136 DAIANEKELALSEEQRKKFRKVKEE 160
D + E + AL EE+ ++ R + E
Sbjct: 1487 DKLRTETQNALKEEEERRKRIAERE 1511
>UNIPROTKB|E1C8H5 [details] [associations]
symbol:ATRX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0070087 "chromo shadow domain binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0003682 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
OMA:GEGKWFR InterPro:IPR025766 PROSITE:PS51533 GO:GO:0000792
GO:GO:0000228 EMBL:AADN02013550 EMBL:AADN02013551 IPI:IPI00573178
Ensembl:ENSGALT00000012737 Uniprot:E1C8H5
Length = 2434
Score = 822 (294.4 bits), Expect = 7.4e-129, Sum P(4) = 7.4e-129
Identities = 178/428 (41%), Positives = 261/428 (60%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 540
+ D +L ET+ + KE +ER K + + + KL + ++ D S +
Sbjct: 1426 IKDDKLRTETQNAL---KEEEERRKRIAEREREREKLREVIEIE-DASP-----LKCPIT 1476
Query: 541 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 600
T +++ E E V++ SI +LK HQV G++FMW+ +S++K K+ G GCILA
Sbjct: 1477 TKLVLDEDEETKEPLVQVHRSIVTRLKPHQVDGVQFMWDCCCESVKKTKTSP-GSGCILA 1535
Query: 601 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS--ELKPLRV 658
H MGLGKT QV++FL+T + L RTAL+V P+N NW EF KW+ + + L V
Sbjct: 1536 HCMGLGKTLQVVSFLHTVLLCDKLNFRTALVVCPLNTALNWLNEFEKWQEGLEDDEKLEV 1595
Query: 659 FMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD-GP 716
L V R + R+ +L +W+ +GGV +IGY +RNL+ G++VK R + AL D GP
Sbjct: 1596 CELATVKRPQERSYMLQRWQDEGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGP 1655
Query: 717 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 776
D +VCDE H++KN + ++A+ ++ +RRI LTG+PLQNNL+EY+CMV+F++E LGS
Sbjct: 1656 DFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSI 1715
Query: 777 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
EFRNRF NPI+NGQ +ST DV++M +R+HILYE L G VQR D + K LPPK +
Sbjct: 1716 KEFRNRFINPIQNGQCADSTLVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKYEY 1775
Query: 837 VITVKLSPLQRRLYKRFLD-LHGFTNDRVSNE-KIRKSFFAGYQALAQIWNHPGILQLT- 893
V+ V+++P+Q +LY+ +LD L G K F +Q L++IW HP LQL
Sbjct: 1776 VLEVRMTPIQCKLYQYYLDHLTGVGGGNEGGRGKAGAKLFQDFQMLSRIWTHPWCLQLDY 1835
Query: 894 ---KDKGY 898
++KGY
Sbjct: 1836 ISKENKGY 1843
Score = 353 (129.3 bits), Expect = 7.4e-129, Sum P(4) = 7.4e-129
Identities = 76/154 (49%), Positives = 102/154 (66%)
Query: 942 DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLS---- 997
DW+ D + + + L++SGKMVLL +IL M +GDK LVFSQS+ +LDLIE +L
Sbjct: 1943 DWYKDFVTDADAEVLEHSGKMVLLFEILRMAEELGDKVLVFSQSLISLDLIEDFLELANR 2002
Query: 998 ------KLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRA 1051
K P +GK W + D+YRLDG T + R+K E FN+ N R + +IST+A
Sbjct: 2003 EKTDKEKPPIYKGEGK-WFRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKA 2061
Query: 1052 GSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWR 1085
GSLGINL +ANRVII D SWNP+YD+Q+I+R +R
Sbjct: 2062 GSLGINLVAANRVIIFDASWNPSYDIQSIFRVYR 2095
Score = 157 (60.3 bits), Expect = 7.4e-129, Sum P(4) = 7.4e-129
Identities = 35/110 (31%), Positives = 55/110 (50%)
Query: 335 CTAC----NNVAIE-VHPHPILNVIVCKDC-KCLLEKKMHVKDADCSECYCVWCGRSSDL 388
CTAC N+ + ++ HP L V++CK C K + + +D+D + C WC +L
Sbjct: 167 CTACGQQVNHFQKDSIYRHPTLKVLICKTCYKYYMSDDIS-RDSDGMDEQCRWCAEGGNL 225
Query: 389 VSCKSCKTLFCTTCVKRNISEACLSDEV-QASCWQCCCCSPS-LLKRLTS 436
+ C C FC C+ RN+ LS + + + W C C P LL +T+
Sbjct: 226 ICCDFCHNAFCKKCILRNLGRKELSTILDENNQWHCYSCHPEPLLDLVTA 275
Score = 53 (23.7 bits), Expect = 1.6e-116, Sum P(3) = 1.6e-116
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 123 EDVDGNSDD--PFVADAI-ANEKELALSEEQRKKFRKVKEEDDANMD 166
E+V + DD P A A +E S +Q+KK R++K DD++ +
Sbjct: 1332 EEVSESEDDQRPRTRSAKKAEAEENQRSYKQKKKRRRIKVPDDSSSE 1378
Score = 53 (23.7 bits), Expect = 1.9e-27, Sum P(3) = 1.9e-27
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 340 NVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDAD-CSECYCVWCGRSSDLVS 390
++ + PH + V DC C KK C +C+ G++ +VS
Sbjct: 1497 SIVTRLKPHQVDGVQFMWDCCCESVKKTKTSPGSGCILAHCMGLGKTLQVVS 1548
Score = 47 (21.6 bits), Expect = 8.0e-27, Sum P(3) = 8.0e-27
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 142 KELALSEEQRKKFRKVKEEDDAN 164
K +A E +R+K R+V E +DA+
Sbjct: 1447 KRIAEREREREKLREVIEIEDAS 1469
Score = 45 (20.9 bits), Expect = 4.2e-117, Sum P(4) = 4.2e-117
Identities = 28/133 (21%), Positives = 51/133 (38%)
Query: 118 SVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDD-----ANMDXXXXXX 172
SV + + D ++A E +L S R K ++ + D +N +
Sbjct: 616 SVNQSSNADSERSTENETLSLAEESDLRRSP--RVKTTPLRRQTDVNPLTSNSEEDSNDT 673
Query: 173 XXXXXXXXISKQKEIGSVDWTIEDSAVE-TRP--LVDASK-SLSNKKTDDGDMPGNNNEV 228
SKQ DS V+ RP L + K ++ + +D +MP EV
Sbjct: 674 SNEKRKRRSSKQSRRKKDKRNSSDSTVDGPRPNKLCKSKKPAILDNSSDSDEMPAVLKEV 733
Query: 229 ALQNLETGVLESS 241
A+ + + ++S+
Sbjct: 734 AMMSRSSSDIDSN 746
Score = 44 (20.5 bits), Expect = 5.3e-117, Sum P(4) = 5.3e-117
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 114 KVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRK 152
KVS +++ G S + A+ + EKE+ S E +K
Sbjct: 851 KVSKRKVDLKKRKGKSSEDDAAEKSSPEKEINHSSEDKK 889
Score = 44 (20.5 bits), Expect = 1.4e-36, Sum P(4) = 1.4e-36
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 784 QNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT 834
+N E+ +NS ED K R +L +L V + KK P +T
Sbjct: 1256 ENEKEDNSESNSEEEDSKKPRYRHRLLRHKLT--VSDGESGEEKKGKPKET 1304
Score = 42 (19.8 bits), Expect = 8.6e-117, Sum P(4) = 8.6e-117
Identities = 18/93 (19%), Positives = 37/93 (39%)
Query: 136 DAIANEKELALSEEQRKKFRKVKEEDDANMDXXXXXXXXXXXXXXISKQ--KEIGSVDWT 193
DA+ ++K E+++ +K + + N I K KE + T
Sbjct: 1068 DAVQSKKRPEAKEKKKISHKKKITKKEQNESSSSDEESYEDKKKKIKKGSVKENKRSNLT 1127
Query: 194 IEDSAVETRPLVDASKSLSNKKTDDGDMPGNNN 226
E V + +V +S S ++ D+ + G+ +
Sbjct: 1128 -EKKKVSKKVIVSSSSSSDKEENDEQNSTGDGS 1159
Score = 42 (19.8 bits), Expect = 3.0e-96, Sum P(4) = 3.0e-96
Identities = 13/62 (20%), Positives = 24/62 (38%)
Query: 868 KIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSRXXXXXXXXXXNMDYNVVIGEK--PRN 925
+I K + GY + +H +LT+++ + M +N+ G P N
Sbjct: 2184 QINKEYIVGYHEHDSLLDHKEEEELTEEERKAAWAEYEAEKKGLTMRFNMPTGTNMLPTN 2243
Query: 926 MN 927
N
Sbjct: 2244 FN 2245
Score = 42 (19.8 bits), Expect = 1.4e-36, Sum P(4) = 1.4e-36
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 490 TKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGA 531
+KRK+ ++K + + + + SS K +N + D S G+
Sbjct: 853 SKRKVDLKKRKGKSSEDDAAEKSSPEKEINHSSEDKKASVGS 894
Score = 41 (19.5 bits), Expect = 3.3e-26, Sum P(3) = 3.3e-26
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 414 DEVQASCWQCCCCSPSLLKRLTS 436
D VQ W CCC S+ K TS
Sbjct: 1508 DGVQFM-WDCCC--ESVKKTKTS 1527
Score = 39 (18.8 bits), Expect = 7.4e-129, Sum P(4) = 7.4e-129
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 481 LDDAELGEETKRKIAIEKERQER 503
+ D E GEE K K KE + R
Sbjct: 1288 VSDGESGEEKKGKPKETKEGKRR 1310
Score = 39 (18.8 bits), Expect = 1.8e-116, Sum P(4) = 1.8e-116
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 130 DDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMD 166
DD + + K L + ++ KK +K+ E ANM+
Sbjct: 327 DDSYSGSLTYSYKALMVPKDMLKKTKKLVETT-ANMN 362
Score = 38 (18.4 bits), Expect = 2.3e-116, Sum P(4) = 2.3e-116
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 121 EIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMD 166
E E +S + F + KE SE ++K K KE++D++ D
Sbjct: 963 EKEHTFDSSKEKFKNKKKSENKEKK-SENLKQKIFK-KEQEDSSSD 1006
Score = 38 (18.4 bits), Expect = 6.0e-115, Sum P(3) = 6.0e-115
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 136 DAIANEKELALSEEQRKKFRKVKEE 160
D + E + AL EE+ ++ R + E
Sbjct: 1429 DKLRTETQNALKEEEERRKRIAERE 1453
Score = 38 (18.4 bits), Expect = 5.8e-25, Sum P(3) = 5.8e-25
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 700 KDRNMAREICHALQDGPDILVCDEAH 725
+D + E C +G +++ CD H
Sbjct: 207 RDSDGMDEQCRWCAEGGNLICCDFCH 232
Score = 37 (18.1 bits), Expect = 1.2e-128, Sum P(4) = 1.2e-128
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 486 LGEETKRKIAIEKERQERLKSLQVQFSSKS 515
LG+ K +A+E+ +++L V+ K+
Sbjct: 394 LGDIKKAHLALEEGLNLEIQALDVKIKEKN 423
Score = 37 (18.1 bits), Expect = 2.9e-116, Sum P(4) = 2.9e-116
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 330 SEKFYCTACNNVAIEVHPHPILNVIVCKD 358
+ +++C +C HP P+L+++ D
Sbjct: 256 NNQWHCYSC-------HPEPLLDLVTACD 277
>ZFIN|ZDB-GENE-030912-11 [details] [associations]
symbol:atrx "alpha thalassemia/mental retardation
syndrome X-linked homolog (human)" species:7955 "Danio rerio"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 ZFIN:ZDB-GENE-030912-11 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
InterPro:IPR025766 PROSITE:PS51533 EMBL:CR931764 EMBL:CR855117
IPI:IPI00899757 Ensembl:ENSDART00000127594 Uniprot:E7F4M2
Length = 2011
Score = 803 (287.7 bits), Expect = 1.1e-126, Sum P(3) = 1.1e-126
Identities = 171/427 (40%), Positives = 256/427 (59%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 540
+ D +L ET+ + KE ++R K + + + KL ++ + S +V
Sbjct: 1038 IKDDKLRTETRDAL---KEEEDRRKRIAERERLREKLRETIEVK------ESSQVTCPIT 1088
Query: 541 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 600
T +++ E E V++ ++ KLK HQV G++FMW+ +S+RKV+ G GCILA
Sbjct: 1089 TKLVLDEDEETKEPLVQVHRNMVTKLKPHQVDGVQFMWDCCCESVRKVEKS-AGSGCILA 1147
Query: 601 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS--ELKPLRV 658
H MGLGKT QV+ L+T + L TAL+V P+N + NW EF KW+ + + L V
Sbjct: 1148 HCMGLGKTLQVVTLLHTVLLCEKLNFSTALVVCPLNTVLNWLNEFEKWQEGLKDEESLEV 1207
Query: 659 FMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPD 717
L V R + RA L +W+ GGV ++GY +RNL+ G+++K + + L D PD
Sbjct: 1208 TELATVKRPQERAYALQRWQEDGGVMIMGYEMYRNLTQGRNIKSKKLKETFQKTLVD-PD 1266
Query: 718 ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++CDE H++KN + ++A+ +K +RR+ LTG+PLQNNL+EY+CMV+F++E LGS
Sbjct: 1267 FVICDEGHVLKNEASAVSKAMNSIKTRRRVVLTGTPLQNNLIEYHCMVNFIKENLLGSVK 1326
Query: 778 EFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFV 837
EFRNRF NPI+NGQ +ST DV++M +R+HILYE L G VQR D + K LPPK +V
Sbjct: 1327 EFRNRFINPIQNGQCADSTLVDVRVMKKRAHILYEMLAGCVQRRDYTALTKFLPPKHEYV 1386
Query: 838 ITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKS--FFAGYQALAQIWNHPGILQLT-- 893
+ V+LSP+Q +LY+ +LD + + K R F +Q L++IW HP LQL
Sbjct: 1387 LAVRLSPIQCKLYRYYLDHFTGVGSALESGKGRAGTKLFQDFQMLSRIWTHPWCLQLDYI 1446
Query: 894 --KDKGY 898
++KGY
Sbjct: 1447 SKENKGY 1453
Score = 345 (126.5 bits), Expect = 1.1e-126, Sum P(3) = 1.1e-126
Identities = 74/152 (48%), Positives = 100/152 (65%)
Query: 942 DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPR 1001
+W+ + + E + L +SGKMVLL +IL + + DK LVFSQS+ +LDLIE +L R
Sbjct: 1543 EWYKEFVSEEDAEVLTHSGKMVLLFEILRLAEEVDDKVLVFSQSLISLDLIEDFLELAGR 1602
Query: 1002 PGKQGK--------LWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGS 1053
++GK W + D+YRLDG T + R+K E FN+ N R + LISTRAGS
Sbjct: 1603 AKEEGKESPYKGEGKWFRNIDYYRLDGSTNALTRKKWAEDFNDISNVRGRLFLISTRAGS 1662
Query: 1054 LGINLHSANRVIIVDGSWNPTYDLQAIYRAWR 1085
LGINL +ANRVII D SWNP+YD+Q+I+R +R
Sbjct: 1663 LGINLVAANRVIIFDASWNPSYDIQSIFRVYR 1694
Score = 172 (65.6 bits), Expect = 1.1e-126, Sum P(3) = 1.1e-126
Identities = 46/150 (30%), Positives = 67/150 (44%)
Query: 296 VVKDE-CSTKLEDHSVSPE--NINDAATDNSLHSQ---SLSEKFYCTAC----NNVAIE- 344
VVK E + + +D PE N A + + L E F CTAC N+ +
Sbjct: 77 VVKPEPVANETKDEFRGPEFRNKGGKAKEEGARKRPDDQLQEIFNCTACGQQVNHFQKDS 136
Query: 345 VHPHPILNVIVCKDC-KCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCV 403
+ HP L+V++CK C K + + D E C WC +L+ C C FC C+
Sbjct: 137 IFQHPALHVLICKSCFKYYMSDDISKDDEGMDE-QCRWCAEGGNLMCCDYCSNAFCKKCI 195
Query: 404 KRNISEACLSDEV-QASCWQCCCCSPSLLK 432
RN+ LS+ + + S W C C P L+
Sbjct: 196 LRNLGRKELSEIMSEQSKWHCYICCPEPLQ 225
Score = 56 (24.8 bits), Expect = 3.6e-26, Sum P(3) = 3.6e-26
Identities = 18/72 (25%), Positives = 31/72 (43%)
Query: 340 NVAIEVHPHPILNVIVCKDCKCLLEKKMHVK-DADCSECYCVWCGRSSDLVSCKSCKTLF 398
N+ ++ PH + V DC C +K+ + C +C+ G++ +V+ L
Sbjct: 1109 NMVTKLKPHQVDGVQFMWDCCCESVRKVEKSAGSGCILAHCMGLGKTLQVVTLLHTVLL- 1167
Query: 399 CTTCVKRNISEA 410
C K N S A
Sbjct: 1168 ---CEKLNFSTA 1176
Score = 43 (20.2 bits), Expect = 4.3e-113, Sum P(3) = 4.3e-113
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 126 DGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMD 166
+G SD+ +A+ N+KE +++ RKV +D A+ D
Sbjct: 913 EGESDEE---NAVKNKKET-----KKRGRRKVDSDDSADSD 945
Score = 43 (20.2 bits), Expect = 4.3e-113, Sum P(3) = 4.3e-113
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 116 SGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRK-VKEEDD 162
SG E E +G+ DD +++ ++ R + R +KEE+D
Sbjct: 1009 SGKSGEEEGEEGDEDDKGTPKGRKKIRKIIKDDKLRTETRDALKEEED 1056
Score = 43 (20.2 bits), Expect = 4.3e-113, Sum P(3) = 4.3e-113
Identities = 16/66 (24%), Positives = 31/66 (46%)
Query: 297 VKDECSTKLEDHSVSPENINDAATDNSLHSQSL----SEKFYCTACNNVAIEVHPHPILN 352
V +E +E +V EN +D TD+S + + S+K + +++ P P L
Sbjct: 493 VPEELFEMVESLAVKKENNDDNLTDSSDNKSNTEVVESKKSLTKLGKKLVVKLTPVP-LK 551
Query: 353 VIVCKD 358
+ + +D
Sbjct: 552 ITIKRD 557
Score = 42 (19.8 bits), Expect = 5.5e-113, Sum P(3) = 5.5e-113
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 140 NEKELALSEEQRKKFRKVKEEDDANMD 166
++++L +S+ K VKE+ D++ D
Sbjct: 598 SKRKLNMSKADEKSSDAVKEQSDSDSD 624
Score = 42 (19.8 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 126 DGNSDDPFVADAIANEKELALSEEQRKKFRKVK 158
D +S + F+A E ++L+ E K RK K
Sbjct: 1455 DEDSMEEFIASE-TEESSMSLTSEDEKPKRKKK 1486
Score = 42 (19.8 bits), Expect = 1.0e-24, Sum P(3) = 1.0e-24
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 181 ISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDM 221
I+ + E S+ T ED + + K S+ K+D D+
Sbjct: 1463 IASETEESSMSLTSEDEKPKRKKKRGRGKDQSSDKSDSDDL 1503
Score = 41 (19.5 bits), Expect = 7.0e-113, Sum P(3) = 7.0e-113
Identities = 12/51 (23%), Positives = 30/51 (58%)
Query: 115 VSGSVEEIEDVDGNSDDPFVADA-IANEKELALSEEQRKKFRKVKEEDDAN 164
+S +V E ED + ++ + A +KE + +E++K+ R++K ++ ++
Sbjct: 959 LSEAVSEDEDDEKSTKRKTRSSKKAAKDKERSYKKEKKKR-RRIKVQESSS 1008
Score = 39 (18.8 bits), Expect = 2.1e-24, Sum P(3) = 2.1e-24
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 414 DEVQASCWQCCC 425
D VQ W CCC
Sbjct: 1120 DGVQFM-WDCCC 1130
>UNIPROTKB|F1RPI9 [details] [associations]
symbol:LOC100514440 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:CU928419
EMBL:CU693469 EMBL:CU928840 EMBL:FP102832
Ensembl:ENSSSCT00000013595 OMA:GPDIVIC ArrayExpress:F1RPI9
Uniprot:F1RPI9
Length = 988
Score = 816 (292.3 bits), Expect = 2.5e-120, Sum P(3) = 2.5e-120
Identities = 177/429 (41%), Positives = 257/429 (59%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 540
L D +L ET+ + KE +ER K + + + KL + ++ I
Sbjct: 203 LKDDKLRTETQNAL---KEEEERRKRIAEREREREKLREVIEIEDASPTKCPIT------ 253
Query: 541 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 600
T +++ E E V++ ++ KLK HQV G++FMW+ +S++K K G GCILA
Sbjct: 254 TKLVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCCESVKKTKKSP-GSGCILA 312
Query: 601 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS---ELKPLR 657
H MGLGKT QV++FL+T + L TAL+V P+N NW EF KW+ + K +
Sbjct: 313 HCMGLGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEK 372
Query: 658 VFMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD-G 715
V L V R + R+ +L +W+ GGV +IGY +RNL+ G++VK R + AL D G
Sbjct: 373 VSELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPG 432
Query: 716 PDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGS 775
PD +VCDE H++KN + ++A+ ++ +RRI LTG+PLQNNL+EY+CMV+F++E LGS
Sbjct: 433 PDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGS 492
Query: 776 SHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV 835
EFRNRF NPI+NGQ +ST DV++M +R+HILYE L G VQR D + K LPPK
Sbjct: 493 IKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHE 552
Query: 836 FVITVKLSPLQRRLYKRFLD-LHGFTNDRVSNE-KIRKSFFAGYQALAQIWNHPGILQLT 893
+V+ V+++P+Q +LY+ +LD L G N K F +Q L++IW HP LQL
Sbjct: 553 YVLAVRMTPIQCKLYQYYLDHLTGVGNSSEGGRGKAGAKLFQDFQMLSRIWTHPWCLQLD 612
Query: 894 ----KDKGY 898
++KGY
Sbjct: 613 YISKENKGY 621
Score = 352 (129.0 bits), Expect = 2.5e-120, Sum P(3) = 2.5e-120
Identities = 76/154 (49%), Positives = 104/154 (67%)
Query: 942 DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPR 1001
DW+ D + + + L++SGKMVLL +IL M +GDK LVFSQS+ +LDLIE +L R
Sbjct: 721 DWYKDFVTDADAEVLEHSGKMVLLFEILRMAEEIGDKVLVFSQSLISLDLIEDFLELASR 780
Query: 1002 PGKQGK----LWK-KGK-----DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRA 1051
+ K ++K +GK D+YRLDG T + R+K E FN+ N R + +IST+A
Sbjct: 781 EKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKA 840
Query: 1052 GSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWR 1085
GSLGINL +ANRVII D SWNP+YD+Q+I+R +R
Sbjct: 841 GSLGINLVAANRVIIFDASWNPSYDIQSIFRVYR 874
Score = 60 (26.2 bits), Expect = 1.5e-29, Sum P(3) = 1.5e-29
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 340 NVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDAD-CSECYCVWCGRSSDLVS 390
N+ I++ PH + V DC C KK C +C+ G++ +VS
Sbjct: 274 NMVIKLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVS 325
Score = 51 (23.0 bits), Expect = 2.5e-120, Sum P(3) = 2.5e-120
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 116 SGSVEEIEDVDGNSDDPFVADAIANE-KELALSEEQRKKFRKVKEEDDANMD 166
SG EE+ + + + P A E +E S +Q+KK R++K ++D++ +
Sbjct: 113 SGVSEEVSESE-DEQRPRTRSAKKAELEENQRSYKQKKKRRRIKVQEDSSSE 163
Score = 47 (21.6 bits), Expect = 3.8e-29, Sum P(3) = 3.8e-29
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 142 KELALSEEQRKKFRKVKEEDDAN 164
K +A E +R+K R+V E +DA+
Sbjct: 224 KRIAEREREREKLREVIEIEDAS 246
Score = 41 (19.5 bits), Expect = 1.3e-27, Sum P(3) = 1.3e-27
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 414 DEVQASCWQCCCCSPSLLKR 433
D VQ W CCC S K+
Sbjct: 285 DGVQFM-WDCCCESVKKTKK 303
Score = 38 (18.4 bits), Expect = 5.7e-119, Sum P(3) = 5.7e-119
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 136 DAIANEKELALSEEQRKKFRKVKEE 160
D + E + AL EE+ ++ R + E
Sbjct: 206 DKLRTETQNALKEEEERRKRIAERE 230
Score = 38 (18.4 bits), Expect = 5.7e-119, Sum P(3) = 5.7e-119
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 134 VADAIANEKELALSEEQRKKFRKVKEEDDANMD 166
V + ++E + EE +++ + +EE+D N D
Sbjct: 156 VQEDSSSENKSHSEEEDKEEEDEEEEEEDENDD 188
Score = 37 (18.1 bits), Expect = 7.3e-119, Sum P(3) = 7.3e-119
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 481 LDDAELGEETKRKIAIEKERQER 503
+ D E GE+ K K KE + R
Sbjct: 73 VSDGESGEDKKTKPKEHKEAKGR 95
>UNIPROTKB|E1C963 [details] [associations]
symbol:RAD54L2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 GO:GO:0003712 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:AADN02056475
EMBL:AADN02056476 EMBL:AADN02056477 IPI:IPI00581654
Ensembl:ENSGALT00000005129 OMA:THMRKNI Uniprot:E1C963
Length = 1148
Score = 440 (159.9 bits), Expect = 4.8e-95, Sum P(3) = 4.8e-95
Identities = 90/195 (46%), Positives = 126/195 (64%)
Query: 700 KDRNMAREICHAL-QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNL 758
+ + + + I AL + GPD+++CDE H IKN A T+QALK ++ +RR+ LTG PLQNNL
Sbjct: 449 RQQELLKGIEKALSRPGPDVVICDEGHRIKNCHASTSQALKNIRSRRRVVLTGYPLQNNL 508
Query: 759 MEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV 818
+EY+CMVDFVR FLGS EF N F+ PI NGQ +ST +DV++M RSH+L+ L+GFV
Sbjct: 509 IEYWCMVDFVRPDFLGSRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFV 568
Query: 819 QRMDM---NVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFA 875
QR+ NV+K LP K VI V+LS +QR LY F++ D ++ + +
Sbjct: 569 QRLPRRGHNVLKVQLPSKEEHVILVRLSKIQRALYTEFMNRF---RDAGNSGWLGLNPLK 625
Query: 876 GYQALAQIWNHPGIL 890
+ +IWNHP +L
Sbjct: 626 AFCVCCKIWNHPDVL 640
Score = 338 (124.0 bits), Expect = 4.8e-95, Sum P(3) = 4.8e-95
Identities = 70/154 (45%), Positives = 99/154 (64%)
Query: 942 DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPR 1001
+W D+L ++ L+ S KMVLL ++ +GDK LVFSQS+ TL +IE +L+K P
Sbjct: 715 EWAKDILCDYQTGVLENSPKMVLLFHLVEESVKLGDKILVFSQSLSTLSVIEEFLAKRPM 774
Query: 1002 P---GKQGKL--WKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGI 1056
P G G + W + +YRLDG T +SER++L+ +FN+P N V L+STRAG LG+
Sbjct: 775 PNPPGSDGGVHNWVRNISYYRLDGSTSASERERLINQFNDPSNASVWLFLLSTRAGCLGV 834
Query: 1057 NLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQ 1090
NL ANRV++ D SWNP +D QA+ R +R K+
Sbjct: 835 NLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKK 868
Score = 309 (113.8 bits), Expect = 4.8e-95, Sum P(3) = 4.8e-95
Identities = 94/268 (35%), Positives = 138/268 (51%)
Query: 481 LDDAELGEE--TKRKIAIEKERQERLK----SLQVQFSSKSKLMNSVTLDG-DLSAGASI 533
LD G E TK K +I+ E E +LQ+ SS S N DG + S+G+ +
Sbjct: 187 LDSTSSGSEDDTKGKNSIKDEVIELSSGEDDALQIVDSSDSG--NEGEEDGSEESSGSHV 244
Query: 534 -EVLG--DAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKS 590
+ L DA+ IVN+ EE + + ++ +K HQ+ GIRF+++N+++S+ + K+
Sbjct: 245 NDALNQSDALGQVIVNINHPPNEEDIFLAPQLAHAVKPHQIGGIRFLYDNLVESLERFKT 304
Query: 591 GDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP 650
G GCILAH+MGLGKT QVI+FL R +T L + PVN L NW EF W P
Sbjct: 305 SS-GFGCILAHSMGLGKTIQVISFLDVLFRHTEA--KTVLAIVPVNTLQNWLAEFNMWLP 361
Query: 651 S-----------ELKP--LRVFMLEDVSRDR--RAELLAKWRAKGGVFLIGYTAFRNLSF 695
+ E++P +V +L D + RA+++ W +GGV L+GY +R LS
Sbjct: 362 APENLPPDYNSKEVQPRTFKVHILNDEHKTTAARAKVVNDWVVEGGVLLMGYEMYRLLSL 421
Query: 696 GKHVKDRNMAREICHALQDGPDILVCDE 723
K R+ Q GP I+ DE
Sbjct: 422 KKSFAT---GRKKKTKKQTGPVIIDLDE 446
>FB|FBgn0039338 [details] [associations]
symbol:XNP "XNP" species:7227 "Drosophila melanogaster"
[GO:0003678 "DNA helicase activity" evidence=NAS] [GO:0005634
"nucleus" evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0007411 "axon guidance" evidence=IMP] [GO:0008347
"glial cell migration" evidence=IMP] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0006917 "induction of apoptosis"
evidence=IMP] [GO:0046328 "regulation of JNK cascade" evidence=IGI]
[GO:0005700 "polytene chromosome" evidence=IDA] [GO:0000775
"chromosome, centromeric region" evidence=IDA] [GO:0051276
"chromosome organization" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0005722 "beta-heterochromatin"
evidence=IDA] [GO:0070868 "heterochromatin organization involved in
chromatin silencing" evidence=IMP] [GO:0006336 "DNA
replication-independent nucleosome assembly" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0005634 GO:GO:0007411 GO:GO:0006917 GO:GO:0003677
GO:GO:0006281 GO:GO:0016887 GO:GO:0004386 GO:GO:0070868
GO:GO:0046328 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008347 KO:K10779 EMBL:AF217802 EMBL:AY058592
RefSeq:NP_651398.1 RefSeq:NP_733107.1 UniGene:Dm.1935
ProteinModelPortal:Q9GQN5 SMR:Q9GQN5 STRING:Q9GQN5 PaxDb:Q9GQN5
EnsemblMetazoa:FBtr0084837 EnsemblMetazoa:FBtr0084838 GeneID:43080
KEGG:dme:Dmel_CG4548 UCSC:CG4548-RA CTD:43080 FlyBase:FBgn0039338
GeneTree:ENSGT00550000074619 InParanoid:Q9GQN5 OMA:KQEYVIN
OrthoDB:EOG4ZW3S5 PhylomeDB:Q9GQN5 GenomeRNAi:43080 NextBio:832107
Bgee:Q9GQN5 GermOnline:CG4548 GO:GO:0005722 Uniprot:Q9GQN5
Length = 1311
Score = 676 (243.0 bits), Expect = 5.2e-93, Sum P(3) = 5.2e-93
Identities = 149/409 (36%), Positives = 241/409 (58%)
Query: 498 KERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVR 557
KE +R K ++ + KL N + + + S+E I +++ E + ++
Sbjct: 401 KEEDDRRKRIE----DRQKLYNRIFVKSE-----SVE-----INELVLDFDEESKKALLQ 446
Query: 558 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDK-GLGCILAHTMGLGKTFQVIAFLY 616
+ + KLK HQV G++FMW+ +++++ S +K G GCILAH MGLGKT QV+ +
Sbjct: 447 VDKGLLKKLKPHQVAGVKFMWDACFETLKE--SQEKPGSGCILAHCMGLGKTLQVVTLSH 504
Query: 617 TAMRSVN-LGLRTALIVTPVNVLHNWKQEFMKWRP-SELKPLRVFMLEDVSR--DRRAEL 672
T + + G+ LI++P++ ++NW +EF W + + V+ D+SR D+ +
Sbjct: 505 TLLVNTRRTGVDRVLIISPLSTVNNWAREFTSWMKFANRNDIEVY---DISRYKDKPTRI 561
Query: 673 --LAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMARE-ICHALQD-GPDILVCDEAHMIK 728
L +W +GGV ++GY +R L+ K R RE + AL D GPD++VCDE H++K
Sbjct: 562 FKLNEWFNEGGVCILGYDMYRILANEKAKGLRKKQREQLMQALVDPGPDLVVCDEGHLLK 621
Query: 729 NTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIE 788
N + ++A+ +++ +RRI LTG+PLQNNL EYYCM+ FV+ LG+ E+ NRF NPI
Sbjct: 622 NEKTSISKAVTRMRTKRRIVLTGTPLQNNLREYYCMIQFVKPNLLGTYKEYMNRFVNPIT 681
Query: 789 NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRR 848
NGQ+T+ST D+++M RSHIL++ L+G +QR D +V+ LPPK +V+ LS LQ++
Sbjct: 682 NGQYTDSTERDLRLMKHRSHILHKLLEGCIQRRDYSVLAPYLPPKHEYVVYTTLSELQQK 741
Query: 849 LYKRFLDLHGFTNDRVSNEKIRKS--FFAGYQALAQIWNHPGILQLTKD 895
LY ++ H ++ + + K F +Q L +IW HP L++ D
Sbjct: 742 LYGYYMTTH---REQSGGDVVGKGARLFQDFQDLRRIWTHPMNLRVNSD 787
Score = 327 (120.2 bits), Expect = 5.2e-93, Sum P(3) = 5.2e-93
Identities = 71/172 (41%), Positives = 102/172 (59%)
Query: 928 DFLQGKNDDGFFQKD----WWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFS 983
+ L G QKD WW + E + +S K+++LL +L C +GDK LVFS
Sbjct: 862 EMLGGLGGGSSVQKDDPSEWWKPFVEERELNNVHHSPKLLILLRLLQQCEAIGDKLLVFS 921
Query: 984 QSIPTLDLIEFYLSKLPRPGK----QGKL------WKKGKDWYRLDGRTESSERQKLVER 1033
QS+ +LD+IE +LS + K +G + W GKD++RLDG +R+ + ++
Sbjct: 922 QSLQSLDVIEHFLSLVDSNTKNYEFEGDVGDFKGCWTSGKDYFRLDGSCSVEQREAMCKQ 981
Query: 1034 FNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWR 1085
FN N R + LISTRAG LGINL +ANRV+I D SWNP++D Q+I+R +R
Sbjct: 982 FNNITNLRARLFLISTRAGGLGINLVAANRVVIFDVSWNPSHDTQSIFRVYR 1033
Score = 42 (19.8 bits), Expect = 5.2e-93, Sum P(3) = 5.2e-93
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 120 EEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMD 166
EE E+ + D+ A++ ++ E+ QRK+ RK E D + D
Sbjct: 303 EEEEERKSSGDEEEAANS--SDSEVM---PQRKRRRKKSESDKGSSD 344
Score = 41 (19.5 bits), Expect = 5.7e-24, Sum P(2) = 5.7e-24
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 18 ASGFLQKKIANDGSENGGKEVSDI 41
+SG ++K+ +G+ GG SD+
Sbjct: 838 SSGKVKKRKTRNGNAGGGDSDSDL 861
>ZFIN|ZDB-GENE-030131-3097 [details] [associations]
symbol:rad54l2 "RAD54-like 2 (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-3097 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
CTD:23132 KO:K10876 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:BX465868
IPI:IPI00481713 RefSeq:XP_687332.3 UniGene:Dr.141427
UniGene:Dr.159400 UniGene:Dr.1755 Ensembl:ENSDART00000091716
Ensembl:ENSDART00000147975 GeneID:558947 KEGG:dre:558947
NextBio:20882710 Uniprot:F1R3L6
Length = 1437
Score = 707 (253.9 bits), Expect = 2.3e-92, Sum P(4) = 2.3e-92
Identities = 162/404 (40%), Positives = 236/404 (58%)
Query: 700 KDRNMAREICHAL-QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNL 758
+ + + + I AL + GPD+++CDE H IKN A T+QALK ++ +RR+ LTG PLQNNL
Sbjct: 450 RQQELMKAIERALSRPGPDVVICDEGHRIKNCHASTSQALKNIRSRRRVVLTGYPLQNNL 509
Query: 759 MEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV 818
+EY+CMVDFVR FLG+ EF N F+ PI NGQ +ST +DV++M RSH+L+ L+GFV
Sbjct: 510 IEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVQLMRYRSHVLHSLLEGFV 569
Query: 819 QRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ 878
QR +V++ LPPK VI V+LS LQR LY F++ + ++ + + +
Sbjct: 570 QRRGHDVLRHQLPPKEEHVILVRLSRLQRALYTEFMNRF---REAGNSGWLGLNPLKAFC 626
Query: 879 ALAQIWNHPGILQ--LTKDKGYPSRXXXXXXXXXXNMDYNVVIGEKP--------RNMN- 927
+IWNHP +L L K+ + + G K R M+
Sbjct: 627 VCCKIWNHPDVLYEALQKENLANEQDLDLDDLNSSSGTRCSAPGIKSKTSDAANSRQMSV 686
Query: 928 ---DFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQ 984
+ LQ K + +W +++ + L+ S KMVLL ++ GDK LVFSQ
Sbjct: 687 GHLNPLQEKANQ-VITYEWAKEVMTNYQTGVLENSAKMVLLFYLIDETVARGDKILVFSQ 745
Query: 985 SIPTLDLIEFYLSKLPRP--GKQGKL-WKKGKDWYRLDGRTESSERQKLVERFNEPLNKR 1041
S+ TL +IE +LS+ P P + G W + ++YRLDG T +SER++L+ +FN+P N +
Sbjct: 746 SLSTLTVIEDFLSRRPMPIQTETGTHNWVRNINYYRLDGSTSASERERLINQFNDPANTQ 805
Query: 1042 VKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWR 1085
L+STRAG LG+NL ANRV++ D SWNP +D QA+ R +R
Sbjct: 806 AWVFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYR 849
Score = 285 (105.4 bits), Expect = 2.3e-92, Sum P(4) = 2.3e-92
Identities = 71/207 (34%), Positives = 115/207 (55%)
Query: 509 VQFSSKSKLMNSVTLDGDLSAGASI-EVLG--DAITGYIVNVVREKGEEAVRIPSSISAK 565
++ SS+ + S+T + S+G+ I + L D+ ++N+ EE + + ++
Sbjct: 221 LRISSEEEEDRSLTPGTEESSGSHINDSLNQPDSQGRVLININHPAEEEDLFLAPQLARA 280
Query: 566 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLG 625
+K HQ+ GIRF+++N+++S+ + K+ G GCILAH+MGLGKT QVI+F+ +R + G
Sbjct: 281 VKPHQIGGIRFLYDNLVESLERYKTSS-GFGCILAHSMGLGKTLQVISFIDVLLR--HTG 337
Query: 626 LRTALIVTPVNVLHNWKQEFMKWRPSE--LKP-----------LRVFMLEDVSRDR--RA 670
+T L + PVN L NW EF W P+ L P +V +L D + RA
Sbjct: 338 AKTVLAIVPVNTLQNWLAEFNLWLPAAEALPPDTDPQQVLPRTFKVHILNDEHKTTVARA 397
Query: 671 ELLAKWRAKGGVFLIGYTAFRNLSFGK 697
+++ W GGV L+GY +R LS K
Sbjct: 398 KVVEDWTGDGGVLLMGYEMYRLLSLKK 424
Score = 39 (18.8 bits), Expect = 2.3e-92, Sum P(4) = 2.3e-92
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 206 DASKSLSNKKTDDGDMPGNNNEVALQNLETGVLE 239
+ + + ++ +DG+ G++ E A LE+ +E
Sbjct: 21 EEEEEMDEEEEEDGENDGDDEEDAGDQLESLEME 54
Score = 39 (18.8 bits), Expect = 2.3e-92, Sum P(4) = 2.3e-92
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKL 517
L + +L TK E ER+ RL+ + +FS + L
Sbjct: 135 LTENQLEAGTKAAQQEELERRRRLEQQRKEFSLHADL 171
>UNIPROTKB|H0Y760 [details] [associations]
symbol:RAD54L2 "Helicase ARIP4" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AC099050 EMBL:AC113933 HGNC:HGNC:29123
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AC092037
ProteinModelPortal:H0Y760 Ensembl:ENST00000432863 Uniprot:H0Y760
Length = 1296
Score = 447 (162.4 bits), Expect = 1.3e-91, Sum P(3) = 1.3e-91
Identities = 91/192 (47%), Positives = 125/192 (65%)
Query: 700 KDRNMAREICHAL-QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNL 758
+ + RE AL + GPD+++CDE H IKN +A T+QALK ++ +RR+ LTG PLQNNL
Sbjct: 269 RQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNL 328
Query: 759 MEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV 818
+EY+CMVDFVR FLG+ EF N F+ PI NGQ +ST +DV++M RSH+L+ L+GFV
Sbjct: 329 IEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFV 388
Query: 819 QRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ 878
QR V+K LP K VI V+LS +QR LY +F+D D S+ + + +
Sbjct: 389 QRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDRF---RDCGSSGWLGLNPLKAFC 445
Query: 879 ALAQIWNHPGIL 890
+IWNHP +L
Sbjct: 446 VCCKIWNHPDVL 457
Score = 320 (117.7 bits), Expect = 1.3e-91, Sum P(3) = 1.3e-91
Identities = 74/179 (41%), Positives = 107/179 (59%)
Query: 929 FLQGKNDDGFFQK-------DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLV 981
FLQG + F ++ +W DLL + L+ S KMVLL ++ +GDK LV
Sbjct: 512 FLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILV 571
Query: 982 FSQSIPTLDLIEFYLSK--LP-RPGKQGK---LWKKGKDWYRLDGRTESSERQKLVERFN 1035
FSQS+ TL LIE +L K +P PG +G+ W + ++RLDG T + ER++L+ +FN
Sbjct: 572 FSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFN 631
Query: 1036 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFL 1094
+P N L+STRAG LG+NL ANRV++ D SWNP +D QA+ R +R K+ ++
Sbjct: 632 DPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYI 690
Score = 290 (107.1 bits), Expect = 1.3e-91, Sum P(3) = 1.3e-91
Identities = 65/175 (37%), Positives = 102/175 (58%)
Query: 538 DAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGC 597
DA+ +VN+ EE V + ++ +K HQ+ GIRF+++N+++S+ + K+ G GC
Sbjct: 72 DALGRVLVNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSS-GFGC 130
Query: 598 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW--------- 648
ILAH+MGLGKT QVI+F+ R + +T L + PVN L NW EF W
Sbjct: 131 ILAHSMGLGKTLQVISFIDVLFR--HTPAKTVLAIVPVNTLQNWLAEFNMWLPPPEALPA 188
Query: 649 --RPSELKP--LRVFMLEDVSRDR--RAELLAKWRAKGGVFLIGYTAFRNLSFGK 697
+P E++P +V +L D + RA+++A W ++GGV L+GY +R L+ K
Sbjct: 189 DNKPEEVQPRFFKVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKK 243
Score = 37 (18.1 bits), Expect = 6.3e-48, Sum P(3) = 6.3e-48
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 869 IRKSFFAGYQALAQIWNHPGILQLTKD 895
++KSF G + +HP I+ L ++
Sbjct: 241 LKKSFATGRPKKTKKRSHPVIIDLDEE 267
>UNIPROTKB|Q9Y4B4 [details] [associations]
symbol:RAD54L2 "Helicase ARIP4" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
GO:GO:0003712 EMBL:AC099050 EMBL:AC113933 EMBL:AB018352
EMBL:BC001474 EMBL:BC024298 IPI:IPI00294787 RefSeq:NP_055921.2
UniGene:Hs.105399 HSSP:Q97XQ5 ProteinModelPortal:Q9Y4B4 SMR:Q9Y4B4
DIP:DIP-47284N IntAct:Q9Y4B4 MINT:MINT-3086380 STRING:Q9Y4B4
PhosphoSite:Q9Y4B4 DMDM:296439458 PaxDb:Q9Y4B4 PRIDE:Q9Y4B4
DNASU:23132 Ensembl:ENST00000409535 Ensembl:ENST00000565618
GeneID:23132 KEGG:hsa:23132 UCSC:uc003dbj.3 CTD:23132
GeneCards:GC03P051637 HGNC:HGNC:29123 HPA:HPA035004
neXtProt:NX_Q9Y4B4 PharmGKB:PA143485591 eggNOG:COG0553
HOGENOM:HOG000168429 HOVERGEN:HBG104283 InParanoid:Q9Y4B4 KO:K10876
OMA:HNLTTPF OrthoDB:EOG4X6C7G SABIO-RK:Q9Y4B4 GenomeRNAi:23132
NextBio:44383 ArrayExpress:Q9Y4B4 Bgee:Q9Y4B4 CleanEx:HS_RAD54L2
Genevestigator:Q9Y4B4 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Uniprot:Q9Y4B4
Length = 1467
Score = 447 (162.4 bits), Expect = 1.5e-91, Sum P(3) = 1.5e-91
Identities = 91/192 (47%), Positives = 125/192 (65%)
Query: 700 KDRNMAREICHAL-QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNL 758
+ + RE AL + GPD+++CDE H IKN +A T+QALK ++ +RR+ LTG PLQNNL
Sbjct: 440 RQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNL 499
Query: 759 MEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV 818
+EY+CMVDFVR FLG+ EF N F+ PI NGQ +ST +DV++M RSH+L+ L+GFV
Sbjct: 500 IEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFV 559
Query: 819 QRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ 878
QR V+K LP K VI V+LS +QR LY +F+D D S+ + + +
Sbjct: 560 QRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDRF---RDCGSSGWLGLNPLKAFC 616
Query: 879 ALAQIWNHPGIL 890
+IWNHP +L
Sbjct: 617 VCCKIWNHPDVL 628
Score = 320 (117.7 bits), Expect = 1.5e-91, Sum P(3) = 1.5e-91
Identities = 74/179 (41%), Positives = 107/179 (59%)
Query: 929 FLQGKNDDGFFQK-------DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLV 981
FLQG + F ++ +W DLL + L+ S KMVLL ++ +GDK LV
Sbjct: 683 FLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILV 742
Query: 982 FSQSIPTLDLIEFYLSK--LP-RPGKQGK---LWKKGKDWYRLDGRTESSERQKLVERFN 1035
FSQS+ TL LIE +L K +P PG +G+ W + ++RLDG T + ER++L+ +FN
Sbjct: 743 FSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFN 802
Query: 1036 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFL 1094
+P N L+STRAG LG+NL ANRV++ D SWNP +D QA+ R +R K+ ++
Sbjct: 803 DPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYI 861
Score = 292 (107.8 bits), Expect = 1.5e-91, Sum P(3) = 1.5e-91
Identities = 77/228 (33%), Positives = 124/228 (54%)
Query: 488 EETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASI-EVLG--DAITGYI 544
E++ R IE E +L + SS+S + + + G + +VL DA+ +
Sbjct: 194 EKSSRDEVIELSSGEE-DTLHIVDSSESVSEDD---EEEEKGGTHVNDVLNQRDALGRVL 249
Query: 545 VNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMG 604
VN+ EE V + ++ +K HQ+ GIRF+++N+++S+ + K+ G GCILAH+MG
Sbjct: 250 VNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSS-GFGCILAHSMG 308
Query: 605 LGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW-----------RPSEL 653
LGKT QVI+F+ R + +T L + PVN L NW EF W +P E+
Sbjct: 309 LGKTLQVISFIDVLFR--HTPAKTVLAIVPVNTLQNWLAEFNMWLPPPEALPADNKPEEV 366
Query: 654 KP--LRVFMLEDVSRDR--RAELLAKWRAKGGVFLIGYTAFRNLSFGK 697
+P +V +L D + RA+++A W ++GGV L+GY +R L+ K
Sbjct: 367 QPRFFKVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKK 414
Score = 38 (18.4 bits), Expect = 6.6e-65, Sum P(3) = 6.6e-65
Identities = 9/43 (20%), Positives = 22/43 (51%)
Query: 483 DAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDG 525
D +L + + + A E+E +E + + + L++ +L+G
Sbjct: 10 DPDLDPDVELEDAEEEEEEEEVAVEECDRDDEEDLLDDPSLEG 52
Score = 37 (18.1 bits), Expect = 6.7e-48, Sum P(3) = 6.7e-48
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 869 IRKSFFAGYQALAQIWNHPGILQLTKD 895
++KSF G + +HP I+ L ++
Sbjct: 412 LKKSFATGRPKKTKKRSHPVIIDLDEE 438
>UNIPROTKB|F1PB65 [details] [associations]
symbol:RAD54L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 CTD:23132 KO:K10876
OMA:HNLTTPF InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 EMBL:AAEX03012203 EMBL:AAEX03012204
RefSeq:XP_003639804.1 Ensembl:ENSCAFT00000016081 GeneID:476608
KEGG:cfa:476608 Uniprot:F1PB65
Length = 1467
Score = 447 (162.4 bits), Expect = 3.1e-91, Sum P(3) = 3.1e-91
Identities = 91/192 (47%), Positives = 125/192 (65%)
Query: 700 KDRNMAREICHAL-QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNL 758
+ + RE AL + GPD+++CDE H IKN +A T+QALK ++ +RR+ LTG PLQNNL
Sbjct: 440 RQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNL 499
Query: 759 MEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV 818
+EY+CMVDFVR FLG+ EF N F+ PI NGQ +ST +DV++M RSH+L+ L+GFV
Sbjct: 500 IEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFV 559
Query: 819 QRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ 878
QR V+K LP K VI V+LS +QR LY +F+D D S+ + + +
Sbjct: 560 QRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDRF---RDCGSSGWLGLNPLKAFC 616
Query: 879 ALAQIWNHPGIL 890
+IWNHP +L
Sbjct: 617 VCCKIWNHPDVL 628
Score = 318 (117.0 bits), Expect = 3.1e-91, Sum P(3) = 3.1e-91
Identities = 74/175 (42%), Positives = 104/175 (59%)
Query: 929 FLQGKNDDGFFQK-------DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLV 981
FLQG + F ++ +W DLL + L+ S KMVLL ++ +GDK LV
Sbjct: 683 FLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILV 742
Query: 982 FSQSIPTLDLIEFYLSK--LP-RPGKQGK---LWKKGKDWYRLDGRTESSERQKLVERFN 1035
FSQS+ TL LIE +L K +P PG G+ W + ++RLDG T + ER++L+ +FN
Sbjct: 743 FSQSLSTLALIEEFLGKREVPCLPGADGQGVQKWVRNVSYFRLDGSTPAFERERLINQFN 802
Query: 1036 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQ 1090
+P N L+STRAG LG+NL ANRV++ D SWNP +D QA+ R +R K+
Sbjct: 803 DPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKK 857
Score = 291 (107.5 bits), Expect = 3.1e-91, Sum P(3) = 3.1e-91
Identities = 77/228 (33%), Positives = 124/228 (54%)
Query: 488 EETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASI-EVLG--DAITGYI 544
E++ R IE E +L + SS+S S + + G + ++L DA+ +
Sbjct: 194 EKSSRDEVIELSSGEE-DTLHIVDSSESV---SEEDEEEEKGGTHVNDILNQRDALGRVL 249
Query: 545 VNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMG 604
VN+ EE V + ++ +K HQ+ GIRF+++N+++S+ + K+ G GCILAH+MG
Sbjct: 250 VNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSS-GFGCILAHSMG 308
Query: 605 LGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW-----------RPSEL 653
LGKT QVI+F+ R + +T L + PVN L NW EF W +P E+
Sbjct: 309 LGKTLQVISFIDVLFR--HTPAKTVLAIVPVNTLQNWLAEFNMWLPAPEALPADNKPEEV 366
Query: 654 KP--LRVFMLEDVSRDR--RAELLAKWRAKGGVFLIGYTAFRNLSFGK 697
+P +V +L D + RA+++A W ++GGV L+GY +R L+ K
Sbjct: 367 QPRFFKVHILNDEHKTMAARAKVMADWVSEGGVLLMGYEMYRLLTLKK 414
Score = 38 (18.4 bits), Expect = 1.1e-47, Sum P(3) = 1.1e-47
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 869 IRKSFFAGYQALAQIWNHPGILQLTKD 895
++KSF G + +HP I+ L ++
Sbjct: 412 LKKSFATGRSKKTKKRSHPVIIDLDEE 438
>RGD|1310600 [details] [associations]
symbol:Rad54l "RAD54 like (S. cerevisiae)" species:10116 "Rattus
norvegicus" [GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006974 "response to
DNA damage stimulus" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0010212 "response to ionizing radiation"
evidence=ISO] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0042493 "response to drug" evidence=ISO]
[GO:0051276 "chromosome organization" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1310600 RGD:1561889 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 EMBL:CH473954 GO:GO:0004386
GO:GO:0003712 CTD:23132 KO:K10876 OrthoDB:EOG4X6C7G
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00196576 RefSeq:NP_001127992.1
UniGene:Rn.52847 Ensembl:ENSRNOT00000018475 GeneID:363135
KEGG:rno:363135 NextBio:682567 Uniprot:D3ZV87
Length = 1299
Score = 447 (162.4 bits), Expect = 3.3e-91, Sum P(3) = 3.3e-91
Identities = 91/192 (47%), Positives = 125/192 (65%)
Query: 700 KDRNMAREICHAL-QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNL 758
+ + RE AL + GPD+++CDE H IKN +A T+QALK ++ +RR+ LTG PLQNNL
Sbjct: 439 RQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNL 498
Query: 759 MEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV 818
+EY+CMVDFVR FLG+ EF N F+ PI NGQ +ST +DV++M RSH+L+ L+GFV
Sbjct: 499 IEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFV 558
Query: 819 QRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ 878
QR V+K LP K VI V+LS +QR LY +F+D D S+ + + +
Sbjct: 559 QRRGHTVLKIHLPAKEENVILVRLSQIQRDLYTQFMDRF---RDCGSSGWLGLNPLKAFC 615
Query: 879 ALAQIWNHPGIL 890
+IWNHP +L
Sbjct: 616 VCCKIWNHPDVL 627
Score = 322 (118.4 bits), Expect = 3.3e-91, Sum P(3) = 3.3e-91
Identities = 74/179 (41%), Positives = 107/179 (59%)
Query: 929 FLQGKNDDGFFQK-------DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLV 981
FLQG + F ++ +W DLL + L+ S KMVLL ++ +GDK LV
Sbjct: 682 FLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILV 741
Query: 982 FSQSIPTLDLIEFYLSK--LP-RPGKQGK---LWKKGKDWYRLDGRTESSERQKLVERFN 1035
FSQS+ TL LIE +L K +P PG +G+ W + ++RLDG T + ER++L+ +FN
Sbjct: 742 FSQSLSTLALIEEFLGKRDMPCPPGAEGQGAQKWVRNVSYFRLDGSTPAFERERLINQFN 801
Query: 1036 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFL 1094
+P N L+STRAG LG+NL ANRV++ D SWNP +D QA+ R +R K+ ++
Sbjct: 802 DPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYI 860
Score = 284 (105.0 bits), Expect = 3.3e-91, Sum P(3) = 3.3e-91
Identities = 64/175 (36%), Positives = 100/175 (57%)
Query: 538 DAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGC 597
DA+ +VN+ EE V + ++ +K HQ+ GIRF+++N+++S+ + K+ G GC
Sbjct: 242 DALGRVLVNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSS-GFGC 300
Query: 598 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW--------- 648
ILAH+MGLGKT QVI+F+ R + +T L + PVN L NW EF W
Sbjct: 301 ILAHSMGLGKTLQVISFIDVLFR--HTPAKTVLAIVPVNTLQNWLAEFNMWLPAPEALPA 358
Query: 649 --RPSELKP--LRVFMLEDVSRD--RRAELLAKWRAKGGVFLIGYTAFRNLSFGK 697
+P E++P +V +L D + RA++ W ++GGV L+GY +R L+ K
Sbjct: 359 DSKPEEIQPRFFKVHILNDEHKTVASRAKVTTDWVSEGGVLLMGYEMYRLLTLKK 413
>RGD|1561889 [details] [associations]
symbol:Rad54l2 "Rad54 like 2 (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0019901 "protein kinase binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1310600 RGD:1561889 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 EMBL:CH473954 GO:GO:0004386
GO:GO:0003712 CTD:23132 KO:K10876 OrthoDB:EOG4X6C7G
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00196576 RefSeq:NP_001127992.1
UniGene:Rn.52847 Ensembl:ENSRNOT00000018475 GeneID:363135
KEGG:rno:363135 NextBio:682567 Uniprot:D3ZV87
Length = 1299
Score = 447 (162.4 bits), Expect = 3.3e-91, Sum P(3) = 3.3e-91
Identities = 91/192 (47%), Positives = 125/192 (65%)
Query: 700 KDRNMAREICHAL-QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNL 758
+ + RE AL + GPD+++CDE H IKN +A T+QALK ++ +RR+ LTG PLQNNL
Sbjct: 439 RQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNL 498
Query: 759 MEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV 818
+EY+CMVDFVR FLG+ EF N F+ PI NGQ +ST +DV++M RSH+L+ L+GFV
Sbjct: 499 IEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFV 558
Query: 819 QRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ 878
QR V+K LP K VI V+LS +QR LY +F+D D S+ + + +
Sbjct: 559 QRRGHTVLKIHLPAKEENVILVRLSQIQRDLYTQFMDRF---RDCGSSGWLGLNPLKAFC 615
Query: 879 ALAQIWNHPGIL 890
+IWNHP +L
Sbjct: 616 VCCKIWNHPDVL 627
Score = 322 (118.4 bits), Expect = 3.3e-91, Sum P(3) = 3.3e-91
Identities = 74/179 (41%), Positives = 107/179 (59%)
Query: 929 FLQGKNDDGFFQK-------DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLV 981
FLQG + F ++ +W DLL + L+ S KMVLL ++ +GDK LV
Sbjct: 682 FLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILV 741
Query: 982 FSQSIPTLDLIEFYLSK--LP-RPGKQGK---LWKKGKDWYRLDGRTESSERQKLVERFN 1035
FSQS+ TL LIE +L K +P PG +G+ W + ++RLDG T + ER++L+ +FN
Sbjct: 742 FSQSLSTLALIEEFLGKRDMPCPPGAEGQGAQKWVRNVSYFRLDGSTPAFERERLINQFN 801
Query: 1036 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFL 1094
+P N L+STRAG LG+NL ANRV++ D SWNP +D QA+ R +R K+ ++
Sbjct: 802 DPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYI 860
Score = 284 (105.0 bits), Expect = 3.3e-91, Sum P(3) = 3.3e-91
Identities = 64/175 (36%), Positives = 100/175 (57%)
Query: 538 DAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGC 597
DA+ +VN+ EE V + ++ +K HQ+ GIRF+++N+++S+ + K+ G GC
Sbjct: 242 DALGRVLVNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSS-GFGC 300
Query: 598 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW--------- 648
ILAH+MGLGKT QVI+F+ R + +T L + PVN L NW EF W
Sbjct: 301 ILAHSMGLGKTLQVISFIDVLFR--HTPAKTVLAIVPVNTLQNWLAEFNMWLPAPEALPA 358
Query: 649 --RPSELKP--LRVFMLEDVSRD--RRAELLAKWRAKGGVFLIGYTAFRNLSFGK 697
+P E++P +V +L D + RA++ W ++GGV L+GY +R L+ K
Sbjct: 359 DSKPEEIQPRFFKVHILNDEHKTVASRAKVTTDWVSEGGVLLMGYEMYRLLTLKK 413
>MGI|MGI:1933196 [details] [associations]
symbol:Rad54l2 "RAD54 like 2 (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IDA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1933196 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 GO:GO:0003712 HSSP:Q97XQ5
CTD:23132 eggNOG:COG0553 HOGENOM:HOG000168429 HOVERGEN:HBG104283
KO:K10876 OrthoDB:EOG4X6C7G InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AJ132389 EMBL:BC133714 EMBL:AK143506
IPI:IPI00118760 RefSeq:NP_109655.2 UniGene:Mm.246689
ProteinModelPortal:Q99NG0 SMR:Q99NG0 STRING:Q99NG0
PhosphoSite:Q99NG0 PaxDb:Q99NG0 PRIDE:Q99NG0 GeneID:81000
KEGG:mmu:81000 UCSC:uc009rko.1 InParanoid:Q99NG0 NextBio:350334
CleanEx:MM_RAD54L2 Genevestigator:Q99NG0 Uniprot:Q99NG0
Length = 1466
Score = 444 (161.4 bits), Expect = 2.2e-90, Sum P(3) = 2.2e-90
Identities = 90/192 (46%), Positives = 125/192 (65%)
Query: 700 KDRNMAREICHAL-QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNL 758
+ + RE AL + GPD+++CDE H IKN +A T+QALK ++ +RR+ LTG PLQNNL
Sbjct: 439 RQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNL 498
Query: 759 MEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV 818
+EY+CMVDFVR FLG+ EF N F+ PI NGQ +ST +DV++M RSH+L+ L+GFV
Sbjct: 499 IEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFV 558
Query: 819 QRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ 878
QR V+K LP K VI V+LS +QR LY +F+D D ++ + + +
Sbjct: 559 QRRGHTVLKIHLPAKEENVILVRLSQIQRDLYTQFMDRF---RDCGTSGWLGLNPLKAFC 615
Query: 879 ALAQIWNHPGIL 890
+IWNHP +L
Sbjct: 616 VCCKIWNHPDVL 627
Score = 317 (116.6 bits), Expect = 2.2e-90, Sum P(3) = 2.2e-90
Identities = 73/175 (41%), Positives = 105/175 (60%)
Query: 929 FLQGKNDDGFFQK-------DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLV 981
FLQG + F ++ +W +LL + L+ S KMVLL ++ +GDK LV
Sbjct: 682 FLQGVGFNPFQERGNNIVTYEWAKELLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILV 741
Query: 982 FSQSIPTLDLIEFYLSK--LP-RPGKQGK---LWKKGKDWYRLDGRTESSERQKLVERFN 1035
FSQS+ TL LIE +L K +P PG +G+ W + ++RLDG T + ER++L+ +FN
Sbjct: 742 FSQSLSTLALIEEFLGKRDMPCLPGAEGQGTQKWVRNVSYFRLDGSTPAFERERLINQFN 801
Query: 1036 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQ 1090
+P N L+STRAG LG+NL ANRV++ D SWNP +D QA+ R +R K+
Sbjct: 802 DPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKK 856
Score = 287 (106.1 bits), Expect = 2.2e-90, Sum P(3) = 2.2e-90
Identities = 65/175 (37%), Positives = 101/175 (57%)
Query: 538 DAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGC 597
DA+ +VN+ EE V + ++ +K HQ+ GIRF+++N+++S+ + K+ G GC
Sbjct: 242 DALGRVLVNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSS-GFGC 300
Query: 598 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW--------- 648
ILAH+MGLGKT QVI+F+ R + +T L + PVN L NW EF W
Sbjct: 301 ILAHSMGLGKTLQVISFIDVLFR--HTPAKTVLAIVPVNTLQNWLAEFNMWLPAPEALPA 358
Query: 649 --RPSELKP--LRVFMLEDVSRD--RRAELLAKWRAKGGVFLIGYTAFRNLSFGK 697
+P E++P +V +L D + RA++ A W ++GGV L+GY +R L+ K
Sbjct: 359 DSKPEEVQPRFFKVHILNDEHKTVASRAKVTADWVSEGGVLLMGYEMYRLLTLKK 413
>WB|WBGene00007761 [details] [associations]
symbol:rad-26 species:6239 "Caenorhabditis elegans"
[GO:0007186 "G-protein coupled receptor signaling pathway"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 KO:K10876 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:Z54236 PIR:T19508
RefSeq:NP_501545.1 ProteinModelPortal:Q18241 SMR:Q18241
DIP:DIP-26472N IntAct:Q18241 MINT:MINT-1047515 STRING:Q18241
PaxDb:Q18241 EnsemblMetazoa:C27B7.4 GeneID:177706
KEGG:cel:CELE_C27B7.4 UCSC:C27B7.4 CTD:177706 WormBase:C27B7.4
HOGENOM:HOG000022111 InParanoid:Q18241 OMA:MERSIFN NextBio:898020
Uniprot:Q18241
Length = 1274
Score = 428 (155.7 bits), Expect = 3.5e-87, Sum P(4) = 3.5e-87
Identities = 84/186 (45%), Positives = 124/186 (66%)
Query: 712 LQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 771
L+ GPD++VCDE H IKN A+ + L + +RRI LTG PLQNNL+EY+CM+DFVR
Sbjct: 453 LEPGPDLVVCDEGHKIKNITAEISMTLGAINTKRRIVLTGYPLQNNLLEYFCMIDFVRPK 512
Query: 772 FLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLP 831
+LG+ F +RF+ PI+NGQ +S+ +DVKI QR+H+L E +KGFVQR +++KK LP
Sbjct: 513 YLGTRKSFIDRFEKPIKNGQCVDSSPDDVKIALQRTHVLVELVKGFVQRRTHHLLKKILP 572
Query: 832 PKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL- 890
+V+ ++ S +QR+LY+ F+ L +N+ + A + A ++IWNHP IL
Sbjct: 573 ESKEYVLLLRKSQIQRQLYRNFV-LWAKNEIAANNDAVFNPLMA-FSACSKIWNHPDILY 630
Query: 891 QLTKDK 896
+L + K
Sbjct: 631 RLVEQK 636
Score = 311 (114.5 bits), Expect = 3.5e-87, Sum P(4) = 3.5e-87
Identities = 72/183 (39%), Positives = 108/183 (59%)
Query: 921 EKPRNMNDFLQGKNDDGFFQK------DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSN 974
+KPR + +D +K DW +L ++ L+ K+V+ L+IL +
Sbjct: 732 KKPRGSKKAPKSDEEDEEVEKESRMKYDWTFELFEKYQEGVLENGYKIVISLEILDESTQ 791
Query: 975 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQG--KLWKKGKDWYRLDGRTESSERQKLVE 1032
+G+K L+FSQ++ LD++E L K GK G + W+K +++ RLDG T ++R+KL+
Sbjct: 792 IGEKILIFSQNLTALDMLEEILKKRQIRGKDGPGQRWEKNRNYLRLDGTTSGADREKLIN 851
Query: 1033 RFN-EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQS 1091
RFN EP + LISTRAGSLGINL SANR II+D WNP +D QA+ R +R ++
Sbjct: 852 RFNSEP---GLSLFLISTRAGSLGINLVSANRCIIIDACWNPCHDAQAVCRVYRYGQQKK 908
Query: 1092 QFL 1094
F+
Sbjct: 909 TFV 911
Score = 281 (104.0 bits), Expect = 3.5e-87, Sum P(4) = 3.5e-87
Identities = 60/158 (37%), Positives = 91/158 (57%)
Query: 544 IVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTM 603
+VN + + + + S ++ L+ HQ+ GIRFM++N I+S+ + K D G GCILAH+M
Sbjct: 234 LVNAGHPEEDPDIFVISHLTHVLQPHQLGGIRFMYDNTIESLGEYKKSD-GFGCILAHSM 292
Query: 604 GLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS------ELKPLR 657
GLGKT QVI F +R+ + L++ P+N + NW E+ KW P ++
Sbjct: 293 GLGKTIQVITFSEIFLRATKA--KKVLVIVPINTIQNWYSEYDKWIPKFSDTGDRIRSFE 350
Query: 658 VFMLEDVSR--DRRAELLAKWRAKGGVFLIGYTAFRNL 693
VF+L D + D+R L+ +W GGV L+GY FR L
Sbjct: 351 VFLLGDGVKTFDQRVNLIEQWDQTGGVMLVGYDMFRLL 388
Score = 42 (19.8 bits), Expect = 3.5e-87, Sum P(4) = 3.5e-87
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 485 ELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDG 525
+L E +EK+R ERL+ ++ + + + M S+ L G
Sbjct: 62 DLDENVLEAQRLEKQRLERLEKIKPE-NDHIQQMESLFLAG 101
Score = 42 (19.8 bits), Expect = 4.1e-59, Sum P(4) = 4.1e-59
Identities = 18/91 (19%), Positives = 41/91 (45%)
Query: 1007 KLWKKGKDWYRL-DGRTESSERQKLVERFN--------EPLNKRVKCTLISTRAGSL--- 1054
K+W YRL + + + E +K VE+ + ++++ ++ G +
Sbjct: 621 KIWNHPDILYRLVEQKKRAEEDKKRVEQMKFAQLQQQQQQQQQQLQGMMMMGNNGMMPGF 680
Query: 1055 GINLH-SANRVIIVDGSWNPT-YDLQAIYRA 1083
G H N +++ +GSW+P Y + + + +
Sbjct: 681 GAQFHPQQNGMMMQNGSWHPNNYQMPSPFNS 711
Score = 40 (19.1 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 489 ETKRKIAIEKERQERLKSLQVQ 510
E K++ +K+R E++K Q+Q
Sbjct: 634 EQKKRAEEDKKRVEQMKFAQLQ 655
>WB|WBGene00006961 [details] [associations]
symbol:xnp-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000003 "reproduction"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0040025 "vulval development" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0006915 GO:GO:0008406
GO:GO:0003677 GO:GO:0006281 GO:GO:0040035 GO:GO:0004386
GO:GO:0040025 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AF134186 EMBL:FO080106 PIR:T34036
RefSeq:NP_001020958.1 ProteinModelPortal:Q9U7E0 SMR:Q9U7E0
STRING:Q9U7E0 PaxDb:Q9U7E0 GeneID:172077 KEGG:cel:CELE_B0041.7
UCSC:B0041.7 CTD:172077 WormBase:B0041.7 HOGENOM:HOG000199608
InParanoid:Q9U7E0 KO:K10779 NextBio:873923 Uniprot:Q9U7E0
Length = 1359
Score = 630 (226.8 bits), Expect = 1.3e-83, Sum P(3) = 1.3e-83
Identities = 159/436 (36%), Positives = 237/436 (54%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 540
+D ++L +ET EKER++RL+ Q +F+ L L L+ +S L +
Sbjct: 379 MDSSKLQKETIDAERAEKERRKRLEKKQKEFNG-IVLEEGEDLTEMLTGTSSQRKLKSVV 437
Query: 541 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 600
+ V E+ ++ V + +S+ LK HQ GI+FM++ +S+ ++ + +G G ILA
Sbjct: 438 LDPDSSTVDEESKKPVEVHNSLVRILKPHQAHGIQFMYDCACESLDRLDT--EGSGGILA 495
Query: 601 HTMGLGKTFQVIAFLYTAMRSVNLG--LRTALIVTPVNVLHNWKQEFMKW---RPSELKP 655
H MGLGKT QVI FL+T + +G + L+V P NV+ NW +EF KW EL
Sbjct: 496 HCMGLGKTLQVITFLHTVLMHEKIGEKCKRVLVVVPKNVIINWFKEFQKWLVDNDEELDT 555
Query: 656 LRVFMLEDVS--RDRRAELLAKWRAKG--GVFLIGYTAFRNLSFG---KHVKDRNMAREI 708
+ V L+ DRR L A W + V +IGY FR L+ K K +N R +
Sbjct: 556 IDVNELDSYKTIEDRRRALKA-WHSSKTPSVMIIGYDLFRILTVEDDPKKKKPKNRNRRL 614
Query: 709 CHALQD--------GPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLME 760
A +D GPD++VCDEAH +KN + ++ + ++ +RRI LTG+PLQNNLME
Sbjct: 615 EKAKEDFRKYLQNPGPDMVVCDEAHKLKNDDSALSKCMVKILTKRRICLTGTPLQNNLME 674
Query: 761 YYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQR 820
Y+CMV+FV+ G LG+ EF NRF N I G+ +++ +V M +R H+LY+ LK V R
Sbjct: 675 YHCMVNFVKPGLLGTKTEFANRFVNIINRGRTKDASPLEVSFMKRRCHVLYDHLKKCVDR 734
Query: 821 MDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQAL 880
D V+ + +PPK +VI V+ + Q LY FL ND V + + K Y
Sbjct: 735 KDYRVLTEAIPPKQEYVINVRQTERQCALYNAFL------NDIVGDSGLSKRLLPDYHMF 788
Query: 881 AQIWNHPGILQLTKDK 896
++IW HP L L + +
Sbjct: 789 SRIWTHPYQLVLHEQR 804
Score = 282 (104.3 bits), Expect = 1.3e-83, Sum P(3) = 1.3e-83
Identities = 61/153 (39%), Positives = 93/153 (60%)
Query: 947 LLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGK-- 1004
L+ E + S K++LL++I+ C +GDK LVFSQS+ +L LI+ L + G+
Sbjct: 934 LVKEEDRDDFALSNKLILLVEIIKKCEEIGDKLLVFSQSLESLTLIKRMLEYMAGTGQWF 993
Query: 1005 ---------QGK---LWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAG 1052
+G+ W +G+D+ +DG +S +R + FN+PLN R + LISTRAG
Sbjct: 994 ADGHEALNAEGEETWSWLEGEDYMTIDGSVQSGKRDAVQTSFNDPLNLRARLMLISTRAG 1053
Query: 1053 SLGINLHSANRVIIVDGSWNPTYDLQAIYRAWR 1085
SLG N+ +ANRVII D WNP++D Q+++R +R
Sbjct: 1054 SLGTNMVAANRVIIFDACWNPSHDTQSLFRVYR 1086
Score = 53 (23.7 bits), Expect = 1.3e-83, Sum P(3) = 1.3e-83
Identities = 23/100 (23%), Positives = 43/100 (43%)
Query: 140 NEKELALSEEQRKKFRKVKEEDDANMDXXXXXXXXXXXXXXISKQKEIGSVDWTIEDSAV 199
+EKE+ S+++ KK VK+E ++ + S ++ S E+
Sbjct: 214 DEKEVKKSKKKSKKV--VKKESESEDEAPEKKKTEKRKRSKTSSEESSESEKSDEEEEEK 271
Query: 200 ETRPLVDASKSLSNKK-TDDGDMPGNNNEVALQNLETGVL 238
E+ P K L+ KK + D + ++ EV Q + G +
Sbjct: 272 ESSPKPKKKKPLAVKKLSSDEESEESDVEVLPQKKKRGAV 311
Score = 47 (21.6 bits), Expect = 3.6e-20, Sum P(3) = 3.6e-20
Identities = 21/90 (23%), Positives = 41/90 (45%)
Query: 483 DAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITG 542
D+ G T + + +KE+ E+ K + SSK + T+D + + + L
Sbjct: 352 DSSEGSITVNRKSKKKEKPEKKKKGIIMDSSK---LQKETIDAERAEKERRKRLEKKQKE 408
Query: 543 YIVNVVREKGEEAVRIPSSISAKLKAHQVV 572
+ +V E+GE+ + + S++ K VV
Sbjct: 409 FN-GIVLEEGEDLTEMLTGTSSQRKLKSVV 437
Score = 44 (20.5 bits), Expect = 1.2e-82, Sum P(3) = 1.2e-82
Identities = 13/73 (17%), Positives = 29/73 (39%)
Query: 148 EEQRKKFRKVKEEDDANMDXXXXXXXXXXXXXXISKQKEIGSVDWTIEDSAVETRPLVDA 207
++ +KK +K K++ + +K+K + T E+S + +P +
Sbjct: 138 QKSKKKSKKTKKQTSSESSEESEEERKVKKSKK-NKEKSVKKRAETSEESDEDEKPSKKS 196
Query: 208 SKSLSNKKTDDGD 220
K L K + +
Sbjct: 197 KKGLKKKAKSESE 209
Score = 44 (20.5 bits), Expect = 1.2e-82, Sum P(3) = 1.2e-82
Identities = 21/102 (20%), Positives = 35/102 (34%)
Query: 147 SEEQRKKFRKVKEED--DANMDXXXXXXXXXXXXXXISKQKEIGSVDWTIEDSAVETRPL 204
S++ RK+ + E D D D K K+ + + ++ + E R
Sbjct: 79 SKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKKEKSKKKRTTSSSEDEDSDEEREQ 138
Query: 205 VDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERS 246
KS KK + + E E SVK+R+
Sbjct: 139 KSKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSVKKRA 180
Score = 41 (19.5 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 13/73 (17%), Positives = 28/73 (38%)
Query: 339 NNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLF 398
N++ + PH + DC C ++ + + +C+ G++ ++ T
Sbjct: 457 NSLVRILKPHQAHGIQFMYDCACESLDRLDTEGSGGILAHCMGLGKTLQVI------TFL 510
Query: 399 CTTCVKRNISEAC 411
T + I E C
Sbjct: 511 HTVLMHEKIGEKC 523
>UNIPROTKB|E1BEK4 [details] [associations]
symbol:Bt.109773 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003712 "transcription
cofactor activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 GO:GO:0003712 OMA:HNLTTPF InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
EMBL:DAAA02054392 EMBL:DAAA02054393 EMBL:DAAA02054394
IPI:IPI00841842 Ensembl:ENSBTAT00000045730 Uniprot:E1BEK4
Length = 1470
Score = 426 (155.0 bits), Expect = 1.7e-83, Sum P(4) = 1.7e-83
Identities = 88/213 (41%), Positives = 130/213 (61%)
Query: 678 AKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQA 737
+K +F++ N + K+ + +C + GPD+++CDE H IKN +A T+QA
Sbjct: 429 SKNNIFILSLKGKEN----QERKEGKFEKALC---RPGPDVVICDEGHRIKNCQASTSQA 481
Query: 738 LKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTS 797
LK ++ +RR+ LTG PLQNNL+EY+CMVDFVR FLG+ EF N F+ PI NGQ +ST
Sbjct: 482 LKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTP 541
Query: 798 EDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLH 857
+DV++M RSH+L+ L+ F+ R V+K LP K VI V+LS +QR LY +F+D
Sbjct: 542 QDVRLMRYRSHVLHSLLELFLSRRGHTVLKIHLPAKEENVILVRLSQIQRDLYTQFMDRF 601
Query: 858 GFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 890
D ++ + + + +IWNHP +L
Sbjct: 602 ---RDCGNSGWLGLNPLKAFCVCCKIWNHPDVL 631
Score = 319 (117.4 bits), Expect = 1.7e-83, Sum P(4) = 1.7e-83
Identities = 74/175 (42%), Positives = 105/175 (60%)
Query: 929 FLQGKNDDGFFQK-------DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLV 981
FLQG + F ++ +W DLL + L+ S KMVLL ++ +GDK LV
Sbjct: 686 FLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILV 745
Query: 982 FSQSIPTLDLIEFYLSK--LP-RPGKQGK---LWKKGKDWYRLDGRTESSERQKLVERFN 1035
FSQS+ TL LIE +L K +P PG +G+ W + ++RLDG T + ER++L+ +FN
Sbjct: 746 FSQSLSTLALIEEFLGKREVPCLPGAEGQGVQKWIRNVSYFRLDGSTPAFERERLINQFN 805
Query: 1036 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQ 1090
+P N L+STRAG LG+NL ANRV++ D SWNP +D QA+ R +R K+
Sbjct: 806 DPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKK 860
Score = 242 (90.2 bits), Expect = 1.7e-83, Sum P(4) = 1.7e-83
Identities = 60/167 (35%), Positives = 93/167 (55%)
Query: 488 EETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASI-EVLG--DAITGYI 544
E++ R IE E +L + SS+S S + + G + +VL DA+ +
Sbjct: 195 EKSSRDEVIELSSGEE-DTLHIVDSSESV---SEEDEEEEKGGTHVNDVLNQRDALGRVL 250
Query: 545 VNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMG 604
VN+ EE V + ++ +K HQ+ GIRF+++N+++S+ + K+ G GCILAH+MG
Sbjct: 251 VNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSS-GFGCILAHSMG 309
Query: 605 LGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
LGKT QVI+F+ R + +T L + PVN L NW EF W P+
Sbjct: 310 LGKTLQVISFIDVLFR--HTPAKTVLAIVPVNTLQNWLAEFNMWLPA 354
Score = 44 (20.5 bits), Expect = 1.7e-83, Sum P(4) = 1.7e-83
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 481 LDDAELGEETKRKIAIEKERQE 502
L+DAE EE + ++A+E+ ++
Sbjct: 19 LEDAEEEEEEEEEVAVEEHGRD 40
Score = 40 (19.1 bits), Expect = 1.1e-62, Sum P(3) = 1.1e-62
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 184 QKEIGSVDWTIEDSAVE--TRPLVDASKSLSNKKTDDGDMPGNNNEVALQ 231
+ E S D IE S+ E T +VD+S+S+S + ++ + N+V Q
Sbjct: 193 EDEKSSRDEVIELSSGEEDTLHIVDSSESVSEEDEEEEKGGTHVNDVLNQ 242
>UNIPROTKB|E7EU19 [details] [associations]
symbol:RAD54L2 "Helicase ARIP4" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
GO:GO:0003712 EMBL:AC099050 EMBL:AC113933 HGNC:HGNC:29123
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AC092037
IPI:IPI00916394 ProteinModelPortal:E7EU19 SMR:E7EU19 PRIDE:E7EU19
Ensembl:ENST00000296477 ArrayExpress:E7EU19 Bgee:E7EU19
Uniprot:E7EU19
Length = 1161
Score = 447 (162.4 bits), Expect = 1.4e-78, Sum P(3) = 1.4e-78
Identities = 91/192 (47%), Positives = 125/192 (65%)
Query: 700 KDRNMAREICHAL-QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNL 758
+ + RE AL + GPD+++CDE H IKN +A T+QALK ++ +RR+ LTG PLQNNL
Sbjct: 134 RQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNL 193
Query: 759 MEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV 818
+EY+CMVDFVR FLG+ EF N F+ PI NGQ +ST +DV++M RSH+L+ L+GFV
Sbjct: 194 IEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFV 253
Query: 819 QRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ 878
QR V+K LP K VI V+LS +QR LY +F+D D S+ + + +
Sbjct: 254 QRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDRF---RDCGSSGWLGLNPLKAFC 310
Query: 879 ALAQIWNHPGIL 890
+IWNHP +L
Sbjct: 311 VCCKIWNHPDVL 322
Score = 320 (117.7 bits), Expect = 1.4e-78, Sum P(3) = 1.4e-78
Identities = 74/179 (41%), Positives = 107/179 (59%)
Query: 929 FLQGKNDDGFFQK-------DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLV 981
FLQG + F ++ +W DLL + L+ S KMVLL ++ +GDK LV
Sbjct: 377 FLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILV 436
Query: 982 FSQSIPTLDLIEFYLSK--LP-RPGKQGK---LWKKGKDWYRLDGRTESSERQKLVERFN 1035
FSQS+ TL LIE +L K +P PG +G+ W + ++RLDG T + ER++L+ +FN
Sbjct: 437 FSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFN 496
Query: 1036 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFL 1094
+P N L+STRAG LG+NL ANRV++ D SWNP +D QA+ R +R K+ ++
Sbjct: 497 DPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYI 555
Score = 163 (62.4 bits), Expect = 1.4e-78, Sum P(3) = 1.4e-78
Identities = 41/110 (37%), Positives = 60/110 (54%)
Query: 603 MGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW-----------RPS 651
MGLGKT QVI+F+ R + +T L + PVN L NW EF W +P
Sbjct: 1 MGLGKTLQVISFIDVLFR--HTPAKTVLAIVPVNTLQNWLAEFNMWLPPPEALPADNKPE 58
Query: 652 ELKP--LRVFMLEDVSRDR--RAELLAKWRAKGGVFLIGYTAFRNLSFGK 697
E++P +V +L D + RA+++A W ++GGV L+GY +R L+ K
Sbjct: 59 EVQPRFFKVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKK 108
Score = 37 (18.1 bits), Expect = 6.4e-35, Sum P(3) = 6.4e-35
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 869 IRKSFFAGYQALAQIWNHPGILQLTKD 895
++KSF G + +HP I+ L ++
Sbjct: 106 LKKSFATGRPKKTKKRSHPVIIDLDEE 132
>DICTYBASE|DDB_G0293120 [details] [associations]
symbol:DDB_G0293120 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0293120
GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.150.50 InterPro:IPR013761
SUPFAM:SSF47769 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000199 RefSeq:XP_629344.1
ProteinModelPortal:Q54C75 EnsemblProtists:DDB0233083 GeneID:8629068
KEGG:ddi:DDB_G0293120 InParanoid:Q54C75 OMA:KGCILAH Uniprot:Q54C75
Length = 2205
Score = 771 (276.5 bits), Expect = 1.5e-78, Sum P(3) = 1.5e-78
Identities = 197/554 (35%), Positives = 303/554 (54%)
Query: 551 KGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQ 610
KGE+ + P I LK HQ G++F+W+N++ KG GCILAH+MGLGK+ Q
Sbjct: 1499 KGEDILLDPE-IGCFLKPHQHSGVQFLWDNMVF---------KGKGCILAHSMGLGKSLQ 1548
Query: 611 VIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKP--LRVFMLEDVSRDR 668
VIAFL+T R + G + LIV P N L+NW++EF KW P K +RVF R
Sbjct: 1549 VIAFLHTHNR-YHKGTKYLLIV-PANTLYNWEKEFKKWLPKSEKSTNIRVFAPRHKDLVR 1606
Query: 669 RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIK 728
R W + GGV + + +F + + +H+K+R+ + I L+ D L+ DE H +K
Sbjct: 1607 RFPTFDNWFSGGGVLAMTFESFSS-TINRHIKERHPS--IAKILET--DFLIVDEGHRLK 1661
Query: 729 NTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIE 788
+T+ + A +K R++ LTG PLQNNLMEYY M+D++R LG+ EF++RF PI
Sbjct: 1662 STKTKISDAANLIKTHRKVLLTGYPLQNNLMEYYTMIDYIRPLHLGNEKEFKDRFVKPIA 1721
Query: 789 NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLP-PKTVFVITVKLSPLQR 847
G + S D+K+M R L +K FVQR+ V+ +++ K+ +I VK + +Q
Sbjct: 1722 AGTKSESNERDIKLMRGRLAALQSLIKDFVQRLGPEVLDREMQVSKSEKMILVKRTDIQS 1781
Query: 848 RLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP-GILQ----LTKDKGYPSRX 902
+L + + F ND FA Y+ L + NHP G+L+ +TKD S
Sbjct: 1782 KLLEISIQNSNF-NDH----------FAQYEVLTVVCNHPDGLLEKKPLVTKDLEKKSIS 1830
Query: 903 XXXXXXXXXNMDYNVVI--GEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKE--LDY 958
++ +I E + + + K D Q ++ ++ Y+ ++
Sbjct: 1831 ELKSILKANDVPTADIIYKNELIQRVIHLNEIKASD-LLQPSVFSTYFNQIGYRRGIVER 1889
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
S K VL +L + ++ + FS SI TL+ +E+++ K K G WK G+D++RL
Sbjct: 1890 SNKFVLFFSMLKHFNQNNERVVTFSFSISTLNQLEYFIQK-----KLG--WKAGRDYFRL 1942
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T + RQ+L+++FN+ N +K LIST+AGSLG NL RVI++D SWNP +D Q
Sbjct: 1943 DGSTPTKTRQRLIDQFNDMAND-IKLFLISTKAGSLGTNLTGGTRVILMDLSWNPVHDRQ 2001
Query: 1079 AIYRAWRCMDKQSQ 1092
A+YR +R M +++Q
Sbjct: 2002 AVYRCYR-MGQKNQ 2014
Score = 53 (23.7 bits), Expect = 1.5e-78, Sum P(3) = 1.5e-78
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKL 517
++ L +E + K +EKER E+ KSL+ Q K +L
Sbjct: 742 VEKERLEKERQEKERLEKERLEKEKSLREQLE-KERL 777
Score = 48 (22.0 bits), Expect = 5.1e-78, Sum P(3) = 5.1e-78
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 483 DAELGEETKRKIAIEKERQERLKSLQVQFSSKSKL 517
D E +E K+K+ EK +ERL+ +++ K KL
Sbjct: 605 DKEKNKE-KKKLEKEKLEKERLEKERLERLEKEKL 638
Score = 48 (22.0 bits), Expect = 5.1e-78, Sum P(3) = 5.1e-78
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 481 LDDAELGEETKRKIAIEKER--QERLKSLQVQFSSKSKL 517
L+ L +E K +EKER +ERL+ L+ + K +L
Sbjct: 694 LEKERLEKERLEKERLEKERLEKERLERLEKERLEKERL 732
Score = 46 (21.3 bits), Expect = 8.3e-78, Sum P(3) = 8.3e-78
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 486 LGEETKRKIAIEKERQERL--KSLQVQFSSKSKL 517
L +E K +EKER E+L + L+ + S K KL
Sbjct: 792 LEKERLEKERLEKERLEKLLKEKLEKEKSLKEKL 825
Score = 46 (21.3 bits), Expect = 8.3e-78, Sum P(3) = 8.3e-78
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 485 ELGEETKRKIAIEKERQERLKS--LQVQFSSKSKL 517
+L +E K +EKER ERL+ L+ + K KL
Sbjct: 614 KLEKEKLEKERLEKERLERLEKEKLEKEKLEKEKL 648
Score = 46 (21.3 bits), Expect = 8.3e-78, Sum P(3) = 8.3e-78
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSK 516
L+ L +E K +EKERQE+ + L+ + K K
Sbjct: 732 LEKERLEKERVEKERLEKERQEK-ERLEKERLEKEK 766
Score = 46 (21.3 bits), Expect = 2.3e-76, Sum P(2) = 2.3e-76
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 141 EKELALSEE-QRKKFRK--VKEEDDAN 164
EKE +L E+ +++K K KE+DD N
Sbjct: 816 EKEKSLKEKLEKEKIEKDKEKEDDDEN 842
Score = 44 (20.5 bits), Expect = 1.3e-77, Sum P(3) = 1.3e-77
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 489 ETKRKIAIEKER--QERLKSLQVQFSSKSKL 517
E K +EKER +ERL+ L+ + K KL
Sbjct: 659 EKLEKERLEKERLEKERLERLEKERLEKEKL 689
Score = 44 (20.5 bits), Expect = 1.3e-77, Sum P(3) = 1.3e-77
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 481 LDDAELGEETKRKIAIEKER--QERLKSLQVQFSSKSKL 517
L+ +L +E K +EKE+ +E+L+ L+ + K +L
Sbjct: 633 LEKEKLEKEKLEKEKLEKEKLEKEKLEKLEKERLEKERL 671
Score = 43 (20.2 bits), Expect = 1.7e-77, Sum P(3) = 1.7e-77
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 485 ELGEETKRKIAIEKERQERLKSLQVQFSSKSKL 517
+L +E K ++EKER ER + L+ + K +L
Sbjct: 771 QLEKERLEKESLEKERVER-ERLEKERLEKERL 802
Score = 43 (20.2 bits), Expect = 1.7e-77, Sum P(3) = 1.7e-77
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 481 LDDAELGEETKRKIAIEKER--QERLKSLQVQFSSKSKLMNSVTL 523
L+ L +E + +EKER +ERL+ +++ K KL +L
Sbjct: 777 LEKESLEKERVERERLEKERLEKERLEKERLEKLLKEKLEKEKSL 821
Score = 42 (19.8 bits), Expect = 2.2e-77, Sum P(3) = 2.2e-77
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKL 517
L+ L +E K +EKER E+ + L+ + K +L
Sbjct: 722 LEKERLEKERLEKERLEKERVEK-ERLEKERQEKERL 757
Score = 41 (19.5 bits), Expect = 1.5e-78, Sum P(3) = 1.5e-78
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 195 EDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQN 232
ED+ +D SK N D + NNN N
Sbjct: 314 EDTMHHNINFLDVSKDDGNSDNDISNALNNNNNTNTNN 351
Score = 41 (19.5 bits), Expect = 2.8e-77, Sum P(3) = 2.8e-77
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKL 517
L+ +L +E K +EKER E+ + L+ + K +L
Sbjct: 684 LEKEKLEKERLEKERLEKERLEK-ERLEKERLEKERL 719
Score = 40 (19.1 bits), Expect = 3.5e-77, Sum P(3) = 3.5e-77
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKL 517
L+ L +E K +EKER E+ + L+ + K +L
Sbjct: 679 LEKERLEKEKLEKERLEKERLEK-ERLEKERLEKERL 714
Score = 39 (18.8 bits), Expect = 4.5e-77, Sum P(3) = 4.5e-77
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKL 517
L+ L +E + +EKER E+ +SL+ + + +L
Sbjct: 757 LEKERLEKEKSLREQLEKERLEK-ESLEKERVERERL 792
Score = 37 (18.1 bits), Expect = 7.3e-77, Sum P(3) = 7.3e-77
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQ 510
L+ +L +E K +EK +ERL+ +++
Sbjct: 643 LEKEKLEKEKLEKEKLEKLEKERLEKERLE 672
>FB|FBgn0034976 [details] [associations]
symbol:CG4049 species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 KO:K10876 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 RefSeq:NP_611885.3
UniGene:Dm.15012 ProteinModelPortal:Q9W1A8 SMR:Q9W1A8
MINT:MINT-1613726 EnsemblMetazoa:FBtr0072285 GeneID:37860
KEGG:dme:Dmel_CG4049 UCSC:CG4049-RA FlyBase:FBgn0034976
InParanoid:Q9W1A8 OMA:KCETDLD OrthoDB:EOG4N8PKK PhylomeDB:Q9W1A8
GenomeRNAi:37860 NextBio:805742 Bgee:Q9W1A8 Uniprot:Q9W1A8
Length = 1669
Score = 450 (163.5 bits), Expect = 1.6e-68, Sum P(2) = 1.6e-68
Identities = 99/238 (41%), Positives = 140/238 (58%)
Query: 669 RAELLAKWRAKGGVFLIGYTAFRNLSF---------GKHVKDRNMARE------ICHAL- 712
RA+++ W GGV LIGY FR L+ G ++ M + AL
Sbjct: 500 RAKVILNWVHDGGVLLIGYELFRLLALKLVKTRKRKGSVIRPDGMDSSSDLMNLVYEALV 559
Query: 713 QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGF 772
+ GPD+++CDE H IKN+ A + ALK+++ +RRI LTG PLQNNL+EY+CMVDFVR +
Sbjct: 560 KPGPDLVICDEGHRIKNSHAGISLALKEIRTRRRIVLTGYPLQNNLLEYWCMVDFVRPNY 619
Query: 773 LGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP 832
LG+ EF N F+ PI+NGQ +ST +D+K+M R+H+L+ L GFVQR V++ LP
Sbjct: 620 LGTRTEFCNMFERPIQNGQCVDSTPDDIKLMRYRAHVLHSLLLGFVQRRSHTVLQLTLPQ 679
Query: 833 KTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 890
K +VI VK++ QR+LY F+ D V + A + +IWNHP +L
Sbjct: 680 KYEYVILVKMTAFQRKLYDTFM------TDVVRTKAFPNPLKA-FAVCCKIWNHPDVL 730
Score = 341 (125.1 bits), Expect = 1.6e-68, Sum P(2) = 1.6e-68
Identities = 75/156 (48%), Positives = 95/156 (60%)
Query: 930 LQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTL 989
L+ K + F W DL+ + + S KM + IL N+GD+ L+FSQS+ TL
Sbjct: 931 LKSKQRNEEFSCSWAVDLMKNYVSGLISNSPKMEIFFCILKESLNLGDRILLFSQSLLTL 990
Query: 990 DLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLIST 1049
+L+E YL PG +LW K ++RLDG T S ER++LV FN N VK LIST
Sbjct: 991 NLLEVYLKSSYVPGSN-QLWTKNSSYFRLDGSTSSQERERLVNEFNA--NSNVKLFLIST 1047
Query: 1050 RAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWR 1085
RAGSLGINL ANRVII D SWNP +D QA+YR +R
Sbjct: 1048 RAGSLGINLTGANRVIIFDASWNPCHDTQAVYRIYR 1083
Score = 307 (113.1 bits), Expect = 4.3e-53, Sum P(2) = 4.3e-53
Identities = 71/183 (38%), Positives = 102/183 (55%)
Query: 544 IVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTM 603
+VN+ +GEE + + I+ +K HQ+ G+RF+++NII+S R+ G GCILAH+M
Sbjct: 369 VVNMAHPEGEETLYLAPQIAKVIKPHQIGGVRFLYDNIIESTRRYNKSS-GFGCILAHSM 427
Query: 604 GLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP-----SELKPLR- 657
GLGKT QV++F +R + +T L V P+N L NW EF W P S ++P
Sbjct: 428 GLGKTLQVVSFCDIFLRHTSA--KTVLCVMPINTLQNWLSEFNMWIPRYSTDSNVRPRNF 485
Query: 658 -VFMLEDVSRD--RRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD 714
+F+L D + RA+++ W GGV LIGY FR L+ K VK R + D
Sbjct: 486 DIFVLNDQQKTLTARAKVILNWVHDGGVLLIGYELFRLLAL-KLVKTRKRKGSVIRP--D 542
Query: 715 GPD 717
G D
Sbjct: 543 GMD 545
Score = 39 (18.8 bits), Expect = 9.1e-37, Sum P(2) = 9.1e-37
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 994 FYLSKLPRPGKQGKLWKKGKDWYRLD 1019
FY K P P G +GK+ Y +D
Sbjct: 817 FYDEK-PEPLNYGSFGSEGKNNYWMD 841
>UNIPROTKB|G4N791 [details] [associations]
symbol:MGG_06447 "SNF2 family ATP-dependent
chromatin-remodeling factor snf21" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001234 RefSeq:XP_003717120.1 ProteinModelPortal:G4N791
EnsemblFungi:MGG_06447T0 GeneID:2684602 KEGG:mgr:MGG_06447
Uniprot:G4N791
Length = 1592
Score = 434 (157.8 bits), Expect = 2.5e-52, Sum P(2) = 2.5e-52
Identities = 108/389 (27%), Positives = 191/389 (49%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 540
+ D E KR++ +K Q+ ++ L + ++ +L A + +
Sbjct: 494 ISDEEPSPSKKRRVKRDKAAQD-MRDLD-----RRRMEEQEERSRELRAQLAKSDMSGLQ 547
Query: 541 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 600
+ I+N ++ + + +P I+ +K HQ+ G+RFMW ++ D+ GC+LA
Sbjct: 548 SRLIINEAKKASQGFIYVPEPIAQNIKDHQIEGVRFMWNQVVND-------DRSQGCLLA 600
Query: 601 HTMGLGKTFQVIAFLYTAMRSVN-------------LGLRTALIVTPVNVLHNWKQEFMK 647
HTMGLGKT QVI L + L L++ P +L+NW EF +
Sbjct: 601 HTMGLGKTVQVICLLVAIQHAAQSPDPSVVSQIPKELQRSQTLVLCPPGLLNNWLDEFSR 660
Query: 648 W-RPSELKPLRVFMLE-DVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMA 705
W P + R++ ++ ++ + RA + W GG+ L+GY+ FR+L K +
Sbjct: 661 WVEPYDALG-RIYKIDSEIPAEARAASIEPWVNTGGILLMGYSLFRSLVSSGDSKMQTWL 719
Query: 706 REICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMV 765
E+ P I+V DEAH IKN R+ ++A+ K + +IA+TGSPL N++ +Y+ M+
Sbjct: 720 TEL-------PSIVVADEAHTIKNERSKISEAMANFKAKAKIAMTGSPLANSVGDYFSMI 772
Query: 766 DFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 825
++V +LG EF + F +PI+ G +S+ + + + L + + V RM
Sbjct: 773 NWVAPNYLGPRKEFTHFFASPIQEGLFVDSSPAEKRRAMKLLKALKDTVSPKVHRMTTTA 832
Query: 826 VKKDLPPKTVFVITVKLSPLQRRLYKRFL 854
++ LP K +VI V L+ Q+ Y+ ++
Sbjct: 833 LRGQLPEKREYVIVVPLTEYQKSAYEVYM 861
Score = 203 (76.5 bits), Expect = 2.5e-52, Sum P(2) = 2.5e-52
Identities = 53/130 (40%), Positives = 71/130 (54%)
Query: 956 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
LD+S K+ +L IL +GDK L+FS IP L+ +E + RP +
Sbjct: 936 LDHSYKITVLTRILDEAKRVGDKVLIFSSRIPVLNFLENLMKMQKRP------------Y 983
Query: 1016 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1075
RLDG T+ S RQ V FN N V LIST AG +G+N+ ANRV+++D W P
Sbjct: 984 SRLDGETKISTRQASVANFNAN-NDEVY--LISTNAGGVGLNIQGANRVVMMDFQWQPAN 1040
Query: 1076 DLQAIYRAWR 1085
+ QAI RA+R
Sbjct: 1041 EQQAIGRAYR 1050
>UNIPROTKB|F1S3V8 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 OMA:TYQALMG EMBL:CU694667
Ensembl:ENSSSCT00000004320 Uniprot:F1S3V8
Length = 747
Score = 432 (157.1 bits), Expect = 1.1e-51, Sum P(2) = 1.1e-51
Identities = 108/349 (30%), Positives = 177/349 (50%)
Query: 549 REKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKT 608
+EK V + +S L+ HQ G+RF+WE + R++ GCI+A MGLGKT
Sbjct: 136 KEKLPVHVVVDPVLSKVLRPHQREGVRFLWECVTS--RRIPGSH---GCIMADEMGLGKT 190
Query: 609 FQVIAFLYTAMRS---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVS 665
Q I ++T +R + A++V+P +++ NW E KW ++PL +
Sbjct: 191 LQCITLMWTLLRQSPDCKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDAGSKDE 250
Query: 666 RDRRAELLAKWRAK---GGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGP-DILVC 721
D++ E R + +I Y FR HV LQ G +++C
Sbjct: 251 IDQKLEGFMNQRGARVPSPILIISYETFR-----LHVG----------VLQKGSVGLVIC 295
Query: 722 DEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRN 781
DE H +KN+ T QAL + RR+ ++G+P+QN+L+EY+ +V FV G LG++HEF+
Sbjct: 296 DEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGLLGTAHEFKK 355
Query: 782 RFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVK 841
RF+ PI G+ ++ ED ++ +R L + + R +++ K LP K V+ +
Sbjct: 356 RFELPILKGRDAAASEEDRRLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCR 415
Query: 842 LSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 890
L+PLQ LYKRFL + + K+ S + +L ++ NHP ++
Sbjct: 416 LTPLQTELYKRFLR-QAKPAEELREGKMSVSSLSSITSLKKLCNHPALI 463
Score = 184 (69.8 bits), Expect = 1.1e-51, Sum P(2) = 1.1e-51
Identities = 53/141 (37%), Positives = 76/141 (53%)
Query: 955 ELDYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1013
E SGKM++L IL + S DK ++ S TLDL E KL R + L+
Sbjct: 491 EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFE----KLCRARRY--LY---- 540
Query: 1014 DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNP 1073
RLDG +R K+VERFN P + ++S++AG G+NL ANR+++ D WNP
Sbjct: 541 --VRLDGTMSIKKRAKVVERFNSPSSPDF-VFMLSSKAGGCGLNLIGANRLVMFDPDWNP 597
Query: 1074 TYDLQAIYRAWRCMDKQSQFL 1094
D QA+ R WR K++ ++
Sbjct: 598 ANDEQAMARVWRDGQKKTCYI 618
Score = 37 (18.1 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 136 DAIANEKELALSEEQRKKFRKV 157
DA A+E++ L EE+ ++ +
Sbjct: 366 DAAASEEDRRLGEERLRELTSI 387
>UNIPROTKB|F1PJC9 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:AAEX03009776 RefSeq:XP_532592.3 Ensembl:ENSCAFT00000006871
GeneID:475368 KEGG:cfa:475368 Uniprot:F1PJC9
Length = 747
Score = 414 (150.8 bits), Expect = 3.0e-50, Sum P(2) = 3.0e-50
Identities = 105/349 (30%), Positives = 174/349 (49%)
Query: 549 REKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKT 608
+EK V + +S L+ HQ G++F+WE + R++ GCI+A MGLGKT
Sbjct: 136 KEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTS--RRIPGSH---GCIMADEMGLGKT 190
Query: 609 FQVIAFLYTAMRS---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVS 665
Q I ++T +R + A++V+P +++ NW E KW ++PL +
Sbjct: 191 LQCITLIWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDE 250
Query: 666 RDRRAELLAKWRA---KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGP-DILVC 721
D++ E R + +I Y FR HV LQ G +++C
Sbjct: 251 IDQKLEGFMNQRGVRVPSPILIISYETFR-----LHVG----------VLQKGSVGLVIC 295
Query: 722 DEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRN 781
DE H +KN+ T QAL + RR+ ++G+P+QN+L+EY+ +V FV G LG++HEF+
Sbjct: 296 DEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKK 355
Query: 782 RFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVK 841
F+ PI G+ ++ D ++ +R L + + R +++ K LP K V+ +
Sbjct: 356 HFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCR 415
Query: 842 LSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 890
L+PLQ LYKRFL + + K+ S + L ++ NHP ++
Sbjct: 416 LTPLQTELYKRFLK-QAKPAEELREGKMTVSSLSSITLLKKLCNHPALI 463
Score = 190 (71.9 bits), Expect = 3.0e-50, Sum P(2) = 3.0e-50
Identities = 54/141 (38%), Positives = 77/141 (54%)
Query: 955 ELDYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1013
E SGKM++L IL + S DK ++ S TLDL E KL R + L+
Sbjct: 491 EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFE----KLCRARRY--LY---- 540
Query: 1014 DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNP 1073
RLDG +R K+VERFN PL+ ++S++AG G+NL ANR+++ D WNP
Sbjct: 541 --VRLDGTMSIKKRAKVVERFNNPLSPDF-VFMLSSKAGGCGLNLIGANRLVMFDPDWNP 597
Query: 1074 TYDLQAIYRAWRCMDKQSQFL 1094
D QA+ R WR K++ ++
Sbjct: 598 ANDEQAMARVWRDGQKKTCYI 618
>ZFIN|ZDB-GENE-040426-968 [details] [associations]
symbol:rad54l "RAD54-like (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA;ISS] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-040426-968 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008094 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 CTD:8438
EMBL:BC046050 IPI:IPI00507004 RefSeq:NP_957438.1 UniGene:Dr.78565
PDB:1Z3I PDBsum:1Z3I ProteinModelPortal:Q7ZV09 SMR:Q7ZV09
STRING:Q7ZV09 GeneID:394119 KEGG:dre:394119 InParanoid:Q7ZV09
EvolutionaryTrace:Q7ZV09 NextBio:20815072 ArrayExpress:Q7ZV09
Uniprot:Q7ZV09
Length = 738
Score = 412 (150.1 bits), Expect = 7.4e-50, Sum P(2) = 7.4e-50
Identities = 105/376 (27%), Positives = 196/376 (52%)
Query: 530 GASIEVLGDAITGY-IVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKV 588
GA + AI+ + ++ +EK V + +S L+ HQ G++F+W+ + R++
Sbjct: 110 GALVLYEPPAISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCVTG--RRI 167
Query: 589 KSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS---VNLGLRTALIVTPVNVLHNWKQEF 645
++ GCI+A MGLGKT Q I ++T ++ + ++V+P +++ NW E
Sbjct: 168 ENS---YGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEV 224
Query: 646 MKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMA 705
KW ++P+ + + S+D L + ++ G+ + T +S+ + +
Sbjct: 225 GKWLGGRVQPVAI---DGGSKDEIDSKLVNFISQQGMRIP--TPILIISY----ETFRLH 275
Query: 706 REICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMV 765
E+ H + G +++CDE H +KN+ T AL + QRR+ ++G+P+QN+L+EY+ +V
Sbjct: 276 AEVLHKGKVG--LVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLV 333
Query: 766 DFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 825
FV G LG++ EF+ RF+ PI G+ +++ +D Q+ L + + R ++
Sbjct: 334 HFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDI 393
Query: 826 VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWN 885
+ K LP K V+ L+PLQ+ LYK FL + + KI S + +L ++ N
Sbjct: 394 LSKYLPVKIEQVVCCNLTPLQKELYKLFLK-QAKPVESLQTGKISVSSLSSITSLKKLCN 452
Query: 886 HPGILQ---LTKDKGY 898
HP ++ LT ++G+
Sbjct: 453 HPALIYEKCLTGEEGF 468
Score = 188 (71.2 bits), Expect = 7.4e-50, Sum P(2) = 7.4e-50
Identities = 52/142 (36%), Positives = 75/142 (52%)
Query: 955 ELDYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1013
E SGKM++L IL M + DK ++ S TLDL E KL + +
Sbjct: 485 EPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFE-------------KLCRNRR 531
Query: 1014 DWY-RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWN 1072
Y RLDG +R K+VERFN P + ++S++AG G+NL ANR+++ D WN
Sbjct: 532 YLYVRLDGTMSIKKRAKIVERFNNPSSPEF-IFMLSSKAGGCGLNLIGANRLVMFDPDWN 590
Query: 1073 PTYDLQAIYRAWRCMDKQSQFL 1094
P D QA+ R WR K++ ++
Sbjct: 591 PANDEQAMARVWRDGQKKTCYI 612
>UNIPROTKB|Q92698 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006310
"DNA recombination" evidence=TAS] [GO:0007126 "meiosis"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0007126
GO:GO:0042493 GO:GO:0003677 GO:GO:0006281 GO:GO:0010212
GO:GO:0006310 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CleanEx:HS_RAD54L GO:GO:0036310 EMBL:AL121602 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG
EMBL:X97795 EMBL:AY623117 EMBL:BC121059 EMBL:BC121060
IPI:IPI00294292 RefSeq:NP_001136020.1 RefSeq:NP_003570.2
UniGene:Hs.642042 ProteinModelPortal:Q92698 SMR:Q92698
DIP:DIP-48628N IntAct:Q92698 STRING:Q92698 PhosphoSite:Q92698
DMDM:51316508 PaxDb:Q92698 PRIDE:Q92698 Ensembl:ENST00000371975
Ensembl:ENST00000442598 GeneID:8438 KEGG:hsa:8438 UCSC:uc001cpl.2
CTD:8438 GeneCards:GC01P046713 HGNC:HGNC:9826 MIM:603615
neXtProt:NX_Q92698 PharmGKB:PA34181 InParanoid:Q92698
PhylomeDB:Q92698 ChiTaRS:RAD54L GenomeRNAi:8438 NextBio:31570
ArrayExpress:Q92698 Bgee:Q92698 Genevestigator:Q92698
GermOnline:ENSG00000085999 Uniprot:Q92698
Length = 747
Score = 415 (151.1 bits), Expect = 9.8e-50, Sum P(2) = 9.8e-50
Identities = 105/349 (30%), Positives = 175/349 (50%)
Query: 549 REKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKT 608
+EK V + +S L+ HQ G++F+WE + R++ GCI+A MGLGKT
Sbjct: 136 KEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTS--RRIPGSH---GCIMADEMGLGKT 190
Query: 609 FQVIAFLYTAMRS---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVS 665
Q I ++T +R + A++V+P +++ NW E KW ++PL +
Sbjct: 191 LQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDE 250
Query: 666 RDRRAELLAKWRA---KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGP-DILVC 721
D++ E R + +I Y FR HV LQ G +++C
Sbjct: 251 IDQKLEGFMNQRGARVSSPILIISYETFR-----LHVG----------VLQKGSVGLVIC 295
Query: 722 DEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRN 781
DE H +KN+ T QAL + RR+ ++G+P+QN+L+EY+ +V FV G LG++HEF+
Sbjct: 296 DEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKK 355
Query: 782 RFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVK 841
F+ PI G+ ++ D ++ +R L + + R +++ K LP K V+ +
Sbjct: 356 HFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCR 415
Query: 842 LSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 890
L+PLQ LYKRFL + + K+ S + +L ++ NHP ++
Sbjct: 416 LTPLQTELYKRFLR-QAKPAEELLEGKMSVSSLSSITSLKKLCNHPALI 463
Score = 184 (69.8 bits), Expect = 9.8e-50, Sum P(2) = 9.8e-50
Identities = 53/141 (37%), Positives = 76/141 (53%)
Query: 955 ELDYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1013
E SGKM++L IL + S DK ++ S TLDL E KL R + L+
Sbjct: 491 EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFE----KLCRARRY--LY---- 540
Query: 1014 DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNP 1073
RLDG +R K+VERFN P + ++S++AG G+NL ANR+++ D WNP
Sbjct: 541 --VRLDGTMSIKKRAKVVERFNSPSSPDF-VFMLSSKAGGCGLNLIGANRLVMFDPDWNP 597
Query: 1074 TYDLQAIYRAWRCMDKQSQFL 1094
D QA+ R WR K++ ++
Sbjct: 598 ANDEQAMARVWRDGQKKTCYI 618
>UNIPROTKB|A1L4Z4 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:DAAA02009002 EMBL:BT029781 IPI:IPI00691258
RefSeq:NP_001124238.1 UniGene:Bt.106758 SMR:A1L4Z4 STRING:A1L4Z4
Ensembl:ENSBTAT00000026513 GeneID:100140639 KEGG:bta:100140639
InParanoid:A1L4Z4 NextBio:20790996 Uniprot:A1L4Z4
Length = 749
Score = 414 (150.8 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
Identities = 105/349 (30%), Positives = 175/349 (50%)
Query: 549 REKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKT 608
+EK V + +S L+ HQ G++F+WE + R++ GCI+A MGLGKT
Sbjct: 137 KEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTS--RRIPGSH---GCIMADEMGLGKT 191
Query: 609 FQVIAFLYTAMRS---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVS 665
Q I ++T +R + A++V+P +++ NW E KW ++PL +
Sbjct: 192 LQCITLMWTLLRQSPDCKPEIDKAVVVSPSSLVRNWYNEVGKWLGGRIQPLAIDGGSKDE 251
Query: 666 RDRRAELLAKWRAK---GGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGP-DILVC 721
D++ E R + +I Y FR HV LQ G +++C
Sbjct: 252 IDQKLEGFMNQRGARVPSPILIISYETFR-----LHVG----------VLQKGSVGLVIC 296
Query: 722 DEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRN 781
DE H +KN+ T QAL + RR+ ++G+P+QN+L+EY+ +V FV G LG++ EF+
Sbjct: 297 DEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKK 356
Query: 782 RFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVK 841
F+ PI G+ ++ ED ++ +R L + + R +++ K LP K V+ +
Sbjct: 357 HFELPILKGRDAAASEEDRRVGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCR 416
Query: 842 LSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 890
L+PLQ LYKRFL + + K+ S + +L ++ NHP ++
Sbjct: 417 LTPLQIELYKRFLR-QAKPAEELREGKMSVSSLSSITSLKKLCNHPALI 464
Score = 184 (69.8 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
Identities = 53/141 (37%), Positives = 76/141 (53%)
Query: 955 ELDYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1013
E SGKM++L IL + S DK ++ S TLDL E KL R + L+
Sbjct: 492 EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFE----KLCRARRY--LY---- 541
Query: 1014 DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNP 1073
RLDG +R K+VERFN P + ++S++AG G+NL ANR+++ D WNP
Sbjct: 542 --VRLDGTMSIKKRAKVVERFNNPSSPDF-VFMLSSKAGGCGLNLIGANRLVMFDPDWNP 598
Query: 1074 TYDLQAIYRAWRCMDKQSQFL 1094
D QA+ R WR K++ ++
Sbjct: 599 ANDEQAMARVWRDGQKKTCYI 619
>UNIPROTKB|O12944 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA
strand renaturation" evidence=ISS] [GO:0036310 "annealing helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0036310
HOGENOM:HOG000204521 HOVERGEN:HBG058654 EMBL:U92461 IPI:IPI00588266
UniGene:Gga.3308 ProteinModelPortal:O12944 SMR:O12944 STRING:O12944
InParanoid:O12944 OrthoDB:EOG4D7Z53 Uniprot:O12944
Length = 733
Score = 410 (149.4 bits), Expect = 1.9e-49, Sum P(2) = 1.9e-49
Identities = 101/353 (28%), Positives = 178/353 (50%)
Query: 545 VNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMG 604
+ + ++K V + +S L+ HQ G++F+W+ + R++ GCI+A MG
Sbjct: 121 LKIDKDKVPVHVVVDPVLSRVLRPHQREGVKFLWDCVTS--RRIPGSH---GCIMADEMG 175
Query: 605 LGKTFQVIAFLYTAMRS---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVF-- 659
LGKT Q I ++T +R + A++V+P +++ NW E KW ++PL +
Sbjct: 176 LGKTLQCITLMWTLLRQSPDCKPEIEKAMVVSPSSLVRNWYNEVEKWLGGRIQPLAIDGG 235
Query: 660 MLEDVSRDRRAELLAKW-RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGP-D 717
E++ R + + R + +I Y FR H + ALQ G
Sbjct: 236 SKEEIDRKLVGSMNQRGLRVPSPILIISYETFR-----LHAE----------ALQKGSVG 280
Query: 718 ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
+++CDE H +KN+ T QAL + RR+ ++G+P+QN+L+EY+ +V FV G LG++
Sbjct: 281 LVICDEGHRLKNSENQTYQALNSLNTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQ 340
Query: 778 EFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFV 837
EF+ F+ PI G+ +++ + + +R L + + R +++ K LP K V
Sbjct: 341 EFKRHFELPILKGRDADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQV 400
Query: 838 ITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 890
+ +L+PLQ LYK FL + + KI S + +L ++ NHP ++
Sbjct: 401 VCCRLTPLQAELYKNFLK-QAKPVEELKEGKINVSSLSSITSLKKLCNHPALI 452
Score = 186 (70.5 bits), Expect = 1.9e-49, Sum P(2) = 1.9e-49
Identities = 52/142 (36%), Positives = 75/142 (52%)
Query: 955 ELDYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1013
E SGKM++L IL + S DK ++ S TLDL E KL + +
Sbjct: 480 EPQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFE-------------KLCRNRR 526
Query: 1014 DWY-RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWN 1072
Y RLDG +R K+VERFN P + ++S++AG G+NL ANR+++ D WN
Sbjct: 527 YLYVRLDGTMSIKKRAKVVERFNSPSSPEF-IFMLSSKAGGCGLNLIGANRLVMFDPDWN 585
Query: 1073 PTYDLQAIYRAWRCMDKQSQFL 1094
P D QA+ R WR K++ ++
Sbjct: 586 PANDEQAMARVWRDGQKKTCYI 607
Score = 37 (18.1 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 1 MVMHCVFRRHGKLLEEGASGFL 22
++ + FR H + L++G+ G +
Sbjct: 261 IISYETFRLHAEALQKGSVGLV 282
>UNIPROTKB|F1NBD4 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 EMBL:AADN02012644 IPI:IPI00818904
Ensembl:ENSGALT00000016863 ArrayExpress:F1NBD4 Uniprot:F1NBD4
Length = 733
Score = 407 (148.3 bits), Expect = 4.3e-49, Sum P(2) = 4.3e-49
Identities = 101/353 (28%), Positives = 178/353 (50%)
Query: 545 VNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMG 604
+ + ++K V + +S L+ HQ G++F+W+ + R++ GCI+A MG
Sbjct: 121 LKIDKDKVPVHVVVDPVLSRVLRPHQREGVKFLWDCVTS--RRIPGSH---GCIMADEMG 175
Query: 605 LGKTFQVIAFLYTAMRS---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVF-- 659
LGKT Q I ++T +R + A++V+P +++ NW E KW ++PL +
Sbjct: 176 LGKTLQCITLMWTLLRQSPDCKPEIEKAMVVSPSSLVRNWYNEVEKWLGGRIQPLAIDGG 235
Query: 660 MLEDVSRDRRAELLAKW-RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGP-D 717
E++ R + + R + +I Y FR H + ALQ G
Sbjct: 236 SKEEIDRKLVGFMNQRGLRVPSPILIISYETFR-----LHAE----------ALQKGSVG 280
Query: 718 ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
+++CDE H +KN+ T QAL + RR+ ++G+P+QN+L+EY+ +V FV G LG++
Sbjct: 281 LVICDEGHRLKNSENQTYQALNSLNTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQ 340
Query: 778 EFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFV 837
EF+ F+ PI G+ +++ + + +R L + + R +++ K LP K V
Sbjct: 341 EFKRHFELPILKGRDADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQV 400
Query: 838 ITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 890
+ +L+PLQ LYK FL + + KI S + +L ++ NHP ++
Sbjct: 401 VCCRLTPLQAELYKNFLK-QAKPVEELKEGKINVSSLSSITSLKKLCNHPALI 452
Score = 186 (70.5 bits), Expect = 4.3e-49, Sum P(2) = 4.3e-49
Identities = 52/142 (36%), Positives = 75/142 (52%)
Query: 955 ELDYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1013
E SGKM++L IL + S DK ++ S TLDL E KL + +
Sbjct: 480 EPQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFE-------------KLCRNRR 526
Query: 1014 DWY-RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWN 1072
Y RLDG +R K+VERFN P + ++S++AG G+NL ANR+++ D WN
Sbjct: 527 YLYVRLDGTMSIKKRAKVVERFNSPSSPEF-IFMLSSKAGGCGLNLIGANRLVMFDPDWN 585
Query: 1073 PTYDLQAIYRAWRCMDKQSQFL 1094
P D QA+ R WR K++ ++
Sbjct: 586 PANDEQAMARVWRDGQKKTCYI 607
Score = 37 (18.1 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 1 MVMHCVFRRHGKLLEEGASGFL 22
++ + FR H + L++G+ G +
Sbjct: 261 IISYETFRLHAEALQKGSVGLV 282
>UNIPROTKB|F1NX31 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00588266 OMA:TYQALMG
EMBL:AADN02012644 Ensembl:ENSGALT00000038354 ArrayExpress:F1NX31
Uniprot:F1NX31
Length = 742
Score = 407 (148.3 bits), Expect = 4.7e-49, Sum P(2) = 4.7e-49
Identities = 101/353 (28%), Positives = 178/353 (50%)
Query: 545 VNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMG 604
+ + ++K V + +S L+ HQ G++F+W+ + R++ GCI+A MG
Sbjct: 130 LKIDKDKVPVHVVVDPVLSRVLRPHQREGVKFLWDCVTS--RRIPGSH---GCIMADEMG 184
Query: 605 LGKTFQVIAFLYTAMRS---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVF-- 659
LGKT Q I ++T +R + A++V+P +++ NW E KW ++PL +
Sbjct: 185 LGKTLQCITLMWTLLRQSPDCKPEIEKAMVVSPSSLVRNWYNEVEKWLGGRIQPLAIDGG 244
Query: 660 MLEDVSRDRRAELLAKW-RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGP-D 717
E++ R + + R + +I Y FR H + ALQ G
Sbjct: 245 SKEEIDRKLVGFMNQRGLRVPSPILIISYETFR-----LHAE----------ALQKGSVG 289
Query: 718 ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
+++CDE H +KN+ T QAL + RR+ ++G+P+QN+L+EY+ +V FV G LG++
Sbjct: 290 LVICDEGHRLKNSENQTYQALNSLNTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQ 349
Query: 778 EFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFV 837
EF+ F+ PI G+ +++ + + +R L + + R +++ K LP K V
Sbjct: 350 EFKRHFELPILKGRDADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQV 409
Query: 838 ITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 890
+ +L+PLQ LYK FL + + KI S + +L ++ NHP ++
Sbjct: 410 VCCRLTPLQAELYKNFLK-QAKPVEELKEGKINVSSLSSITSLKKLCNHPALI 461
Score = 186 (70.5 bits), Expect = 4.7e-49, Sum P(2) = 4.7e-49
Identities = 52/142 (36%), Positives = 75/142 (52%)
Query: 955 ELDYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1013
E SGKM++L IL + S DK ++ S TLDL E KL + +
Sbjct: 489 EPQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFE-------------KLCRNRR 535
Query: 1014 DWY-RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWN 1072
Y RLDG +R K+VERFN P + ++S++AG G+NL ANR+++ D WN
Sbjct: 536 YLYVRLDGTMSIKKRAKVVERFNSPSSPEF-IFMLSSKAGGCGLNLIGANRLVMFDPDWN 594
Query: 1073 PTYDLQAIYRAWRCMDKQSQFL 1094
P D QA+ R WR K++ ++
Sbjct: 595 PANDEQAMARVWRDGQKKTCYI 616
Score = 37 (18.1 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 1 MVMHCVFRRHGKLLEEGASGFL 22
++ + FR H + L++G+ G +
Sbjct: 270 IISYETFRLHAEALQKGSVGLV 291
>TAIR|locus:2094083 [details] [associations]
symbol:RAD54 "homolog of RAD54" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=ISS] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=RCA;IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0010332 "response to gamma
radiation" evidence=IEP;RCA] [GO:0006302 "double-strand break
repair" evidence=RCA] [GO:0006310 "DNA recombination" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0007129
"synapsis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0007140 "male meiosis"
evidence=RCA] [GO:0010212 "response to ionizing radiation"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016444 "somatic cell DNA
recombination" evidence=RCA] [GO:0032204 "regulation of telomere
maintenance" evidence=RCA] [GO:0043247 "telomere maintenance in
response to DNA damage" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0045003 "double-strand break repair via synthesis-dependent
strand annealing" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003677 GO:GO:0010332 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0045003
HOGENOM:HOG000204521 KO:K10875 EMBL:DQ912973 EMBL:AB250666
IPI:IPI00531645 RefSeq:NP_188552.3 UniGene:At.53386 SMR:Q0PCS3
IntAct:Q0PCS3 STRING:Q0PCS3 EnsemblPlants:AT3G19210.1 GeneID:821455
KEGG:ath:AT3G19210 TAIR:At3g19210 InParanoid:Q0PCS3 OMA:SDTHDRF
ProtClustDB:CLSN2693236 Genevestigator:Q0PCS3 Uniprot:Q0PCS3
Length = 910
Score = 419 (152.6 bits), Expect = 4.9e-49, Sum P(3) = 4.9e-49
Identities = 109/346 (31%), Positives = 176/346 (50%)
Query: 561 SISAK-LKAHQVVGIRFMWENIIQSIRKVKSGDKGL-GCILAHTMGLGKTFQVIAFLYTA 618
S+ K L+ HQ G++FM++ + + G + GCILA MGLGKT Q I LYT
Sbjct: 174 SVLVKFLRPHQREGVQFMFD-CVSGLH----GSANINGCILADDMGLGKTLQSITLLYTL 228
Query: 619 MRSVNLG---LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAK 675
+ G ++ A+IVTP +++ NW+ E KW ++ + + E D + + +
Sbjct: 229 LCQGFDGTPMVKKAIIVTPTSLVSNWEAEIKKWVGDRIQ--LIALCESTRDDVLSGIDSF 286
Query: 676 WRAKGG--VFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRAD 733
R + V +I Y FR H + + C + + D+L+CDEAH +KN +
Sbjct: 287 TRPRSALQVLIISYETFR-----MH------SSKFCQS--ESCDLLICDEAHRLKNDQTL 333
Query: 734 TTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHT 793
T +AL + C+RR+ L+G+P+QN+L E++ MV+F G LG + FR+ ++ PI G+
Sbjct: 334 TNRALASLTCKRRVLLSGTPMQNDLEEFFAMVNFTNPGSLGDAAHFRHYYEAPIICGREP 393
Query: 794 NSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRF 853
+T E+ + RS L ++ F+ R ++ LPPK + V+ K++ LQ LY F
Sbjct: 394 TATEEEKNLAADRSAELSSKVNQFILRRTNALLSNHLPPKIIEVVCCKMTTLQSTLYNHF 453
Query: 854 LDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYP 899
+ N K K A AL ++ NHP ++ T G P
Sbjct: 454 ISSKNLKRALADNAKQTK-VLAYITALKKLCNHPKLIYDTIKSGNP 498
Score = 182 (69.1 bits), Expect = 4.9e-49, Sum P(3) = 4.9e-49
Identities = 55/147 (37%), Positives = 76/147 (51%)
Query: 956 LDYSGKMVLLLDILTMCSNMGDKSLVF-SQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKD 1014
++ SGKM +L +L D +V S TLDL ++L R ++
Sbjct: 530 VELSGKMHVLSRLLANLRRKTDDRIVLVSNYTQTLDLF----AQLCR--------ERRYP 577
Query: 1015 WYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPT 1074
+ RLDG T S+RQKLV R N+P K L+S++AG G+NL ANR+++ D WNP
Sbjct: 578 FLRLDGSTTISKRQKLVNRLNDP-TKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPA 636
Query: 1075 YDLQAIYRAWRCMDKQS----QFLLTG 1097
D QA R WR K+ +FL TG
Sbjct: 637 NDKQAAARVWRDGQKKRVYVYRFLSTG 663
Score = 48 (22.0 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 305 LEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVI 354
L +H +S +N+ A DN+ ++ L+ Y TA + HP I + I
Sbjct: 449 LYNHFISSKNLKRALADNAKQTKVLA---YITALKKLCN--HPKLIYDTI 493
Score = 42 (19.8 bits), Expect = 4.9e-49, Sum P(3) = 4.9e-49
Identities = 13/53 (24%), Positives = 20/53 (37%)
Query: 194 IEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERS 246
+E+ E D S + K D D G N+ ++L L S +S
Sbjct: 1 MEEEDEEILSSSDCDDSSDSYKDDSQDSEGENDNPECEDLAVVSLSSDADRKS 53
Score = 41 (19.5 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 12/45 (26%), Positives = 17/45 (37%)
Query: 313 ENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCK 357
E + A D S S +F N + P I+ V+ CK
Sbjct: 397 EEEKNLAADRSAELSSKVNQFILRRTNALLSNHLPPKIIEVVCCK 441
>MGI|MGI:894697 [details] [associations]
symbol:Rad54l "RAD54 like (S. cerevisiae)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IGI] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0010212 "response to ionizing radiation"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0042493 "response to drug" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IGI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 MGI:MGI:894697 GO:GO:0005524 GO:GO:0005634
GO:GO:0042493 GO:GO:0003677 GO:GO:0010212 GO:GO:0000724
GO:GO:0004386 GO:GO:0051276 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
GO:GO:0036310 UniGene:Mm.3655 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:X97796 EMBL:AK088876 EMBL:BC021643 IPI:IPI00404187
RefSeq:NP_001116430.1 RefSeq:NP_001116431.1 RefSeq:NP_033041.3
ProteinModelPortal:P70270 SMR:P70270 STRING:P70270
PhosphoSite:P70270 PRIDE:P70270 Ensembl:ENSMUST00000102704
Ensembl:ENSMUST00000102705 GeneID:19366 KEGG:mmu:19366
InParanoid:P70270 NextBio:296441 Bgee:P70270 CleanEx:MM_RAD54L
Genevestigator:P70270 GermOnline:ENSMUSG00000028702 Uniprot:P70270
Length = 747
Score = 412 (150.1 bits), Expect = 5.7e-49, Sum P(2) = 5.7e-49
Identities = 104/348 (29%), Positives = 174/348 (50%)
Query: 549 REKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKT 608
+EK V + +S L+ HQ G++F+WE + R++ GCI+A MGLGKT
Sbjct: 136 KEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTS--RRIPGSH---GCIMADEMGLGKT 190
Query: 609 FQVIAFLYTAMRS---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVS 665
Q I ++T +R + A++V+P +++ NW E KW ++PL +
Sbjct: 191 LQCITLMWTLLRQSPECKPEIEKAVVVSPSSLVKNWYNEVEKWLGGRIQPLAIDGGSKDE 250
Query: 666 RDRRAELLAKWRAK---GGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 722
DR+ E R + +I Y FR L G +K N+ +++CD
Sbjct: 251 IDRKLEGFMNQRGARVPSPILIISYETFR-LHVGV-LKKGNVG------------LVICD 296
Query: 723 EAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNR 782
E H +KN+ T QAL + RR+ ++G+P+QN+L+EY+ +V FV G LG++HEF+
Sbjct: 297 EGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKH 356
Query: 783 FQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKL 842
F+ PI + ++ D + +R L + + R +++ K LP K V+ +L
Sbjct: 357 FELPILKSRDAAASEADRQRGEERLRELIGIVNRCLIRRTSDILSKYLPVKIEQVVCCRL 416
Query: 843 SPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 890
+PLQ LYKRFL + + K+ S + +L ++ NHP ++
Sbjct: 417 TPLQTELYKRFLR-QAKPEEELREGKMSVSSLSSITSLKKLCNHPALI 463
Score = 180 (68.4 bits), Expect = 5.7e-49, Sum P(2) = 5.7e-49
Identities = 52/132 (39%), Positives = 71/132 (53%)
Query: 955 ELDYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1013
E SGKM++L IL + S DK ++ S TLDL E KL R + L+
Sbjct: 491 EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFE----KLCRVRRY--LY---- 540
Query: 1014 DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNP 1073
RLDG +R K+VERFN P + ++S++AG G+NL ANR+++ D WNP
Sbjct: 541 --VRLDGTMSIKKRAKVVERFNSPSSPDF-VFMLSSKAGGCGLNLIGANRLVMFDPDWNP 597
Query: 1074 TYDLQAIYRAWR 1085
D QA+ R WR
Sbjct: 598 ANDEQAMARVWR 609
>DICTYBASE|DDB_G0285117 [details] [associations]
symbol:rad54b "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0285117 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AAFI02000074 KO:K10877 RefSeq:XP_639875.1 STRING:Q54NP1
EnsemblProtists:DDB0232413 GeneID:8624946 KEGG:ddi:DDB_G0285117
InParanoid:Q54NP1 OMA:PINKSRE ProtClustDB:CLSZ2735674
Uniprot:Q54NP1
Length = 989
Score = 429 (156.1 bits), Expect = 2.4e-48, Sum P(2) = 2.4e-48
Identities = 120/359 (33%), Positives = 191/359 (53%)
Query: 550 EKGEEAVRIPSS--ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGL-GCILAHTMGLG 606
E+G + V + I L+ HQ G++F+++ + + S D G G ILA MGLG
Sbjct: 261 EEGNKVVHVVLDPYIGRHLRPHQRRGVKFLYDCVTGN-----SNDNGYSGAILADQMGLG 315
Query: 607 KTFQVIAFLYTAMRSVNLG---LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLED 663
KT Q +A L+T ++ G ++ A+IVTP +++NWK E KW + + + + +
Sbjct: 316 KTLQTLALLWTLLKQSPYGKPTIKKAIIVTPSTLVNNWKSEIQKWFGNG-RLIASTLTDS 374
Query: 664 VSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 723
++++ +A L + V +I Y R F K ++ + C ++VCDE
Sbjct: 375 LTKETKANLNDFNTSIKPVLIISYEQCR--IFSKELETMS-----C-------GLMVCDE 420
Query: 724 AHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRF 783
AH +KN+ A TTQ++ V+C R+I LTG+P+QNNL+E+Y M+DF LGS +F+ F
Sbjct: 421 AHRLKNSNAKTTQSIMSVRCDRKILLTGTPIQNNLVEFYSMMDFANPNCLGSLADFKKSF 480
Query: 784 QNPIENGQHT-NSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKL 842
PI + + NSTS I ++S L + +K F+ R N+++K LPPK V +I KL
Sbjct: 481 IIPINKSRESPNSTSTSEGI--RKSIQLSKLVKPFIIRRKSNILEKYLPPKRVQIIFCKL 538
Query: 843 SPLQRRLYKRFLDLHGFTNDRVSNEKIRKSF--FAGYQALAQIWNHPGILQLT--KDKG 897
S LQ LYK L+ + +S R S + L ++ N P +L L +D+G
Sbjct: 539 SSLQIELYKSILNSNS-VKSLLSGGGSRGSATSLSTITLLKKLCNSPSLLLLNNKQDEG 596
Score = 163 (62.4 bits), Expect = 2.4e-48, Sum P(2) = 2.4e-48
Identities = 50/176 (28%), Positives = 81/176 (46%)
Query: 930 LQGKNDDGFFQKDWW-NDLLHEHTYKELDY----------SGKMVLLLDILTMCSNMGDK 978
L K D+G Q+ ++L +H Y +Y SGK++ + ++ M +K
Sbjct: 589 LNNKQDEGGEQQQTEIQNILKKHNYTLENYQEIQEQQDNESGKLLFVESLIKQLKPMNEK 648
Query: 979 SLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1038
++ S TLD+ E +L D RLDG ++ RQ LV++FN
Sbjct: 649 LVLVSNFTKTLDVFERLCKRL------------SIDTLRLDGDVKADSRQALVDKFNSST 696
Query: 1039 ---------NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWR 1085
+ + + L+S +AG +GINL N +++ D WNP D+QA+ R WR
Sbjct: 697 QNVSSSKSSSSQYQVFLLSAKAGGVGINLIGGNHLVLYDPDWNPAIDIQAMERIWR 752
>ASPGD|ASPL0000044476 [details] [associations]
symbol:AN2255 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001660 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50105 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:BN001307 Gene3D:1.10.150.50 InterPro:IPR013761
SUPFAM:SSF47769 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000037 RefSeq:XP_659859.1
ProteinModelPortal:Q5BB25 EnsemblFungi:CADANIAT00008947
GeneID:2874753 KEGG:ani:AN2255.2 HOGENOM:HOG000172620 OMA:ADEAHKM
OrthoDB:EOG4S7NZ2 Uniprot:Q5BB25
Length = 1832
Score = 458 (166.3 bits), Expect = 1.4e-47, Sum P(3) = 1.4e-47
Identities = 129/420 (30%), Positives = 206/420 (49%)
Query: 627 RTALIVTPVNVLHNWKQEFMKWRPSE-LKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLI 685
RT L++ P +++ NW+ EF+ W P + L +R ED R AE+ + W KGGV LI
Sbjct: 1013 RT-LVICPSSLIENWRDEFVMWTPQDVLLTVRQVSSEDNMDVRLAEV-SMWYEKGGVLLI 1070
Query: 686 GYTAFRN--LSFGKHVKDRNMA----REICHALQDGPDILVCDEAHMIKNTRADTTQALK 739
+ FRN L+ K ++ +++ H L +GP I++ DEAH +KN + T+QA
Sbjct: 1071 SFDIFRNWVLNQATAKKSPPLSDSKHQDLKHWLLEGPSIIIADEAHKMKNPDSATSQAAM 1130
Query: 740 QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSED 799
Q + + RIALTGSPL NNL +YY MV+++ +LGS EF+ + PI+ G + +ST +
Sbjct: 1131 QFRSKSRIALTGSPLANNLGDYYTMVNWISYDYLGSFLEFKANYIEPIKEGLYADSTYGE 1190
Query: 800 VKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGF 859
+ + +L + L+ + R D+ ++ DLPPK FV+TV L+ +Q+ Y + F
Sbjct: 1191 KRKSLMKLQVLKQILEPKINRADITALEGDLPPKVEFVLTVPLTKIQKEAYDMYA---AF 1247
Query: 860 TNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSRXXXXXXXXXXNMDYNVVI 919
+E + ++ L NHP Q DK +V
Sbjct: 1248 ILQGRMDEVTQTQLWSWLSILGLCCNHPACFQ---DKLVSQAQGSSKKTNDTRKTSDVDQ 1304
Query: 920 GEKPRNMND-FLQGKNDDGFFQ--KDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMG 976
P + D F++ + + + H K ++ S + V+ I+ G
Sbjct: 1305 AISPDRLGDGFIENAGIRNLEELVAEQLRIFANVHDLKAVELSVRAVITKRIIDESIRAG 1364
Query: 977 DKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 1036
DK LVFSQS+ TLD YL +L L + + RLDG+T ++ RQ ++FN+
Sbjct: 1365 DKVLVFSQSLHTLD----YLERL--------LKVTNRQYSRLDGQTPAATRQAATKKFNQ 1412
Score = 208 (78.3 bits), Expect = 1.6e-20, Sum P(3) = 1.6e-20
Identities = 58/144 (40%), Positives = 84/144 (58%)
Query: 951 HTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWK 1010
H K ++ S + V+ I+ GDK LVFSQS+ TLD YL +L L
Sbjct: 1339 HDLKAVELSVRAVITKRIIDESIRAGDKVLVFSQSLHTLD----YLERL--------LKV 1386
Query: 1011 KGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGS 1070
+ + RLDG+T ++ RQ ++FN+ K+V LISTRAG LG+N+ ANRVII D S
Sbjct: 1387 TNRQYSRLDGQTPAATRQAATKKFNQG-EKQVY--LISTRAGGLGLNITGANRVIIFDFS 1443
Query: 1071 WNPTYDLQAIYRAWRCMDKQSQFL 1094
++P ++ QAI RA+R ++ F+
Sbjct: 1444 FSPIWEEQAIGRAYRLGQQKPVFV 1467
Score = 145 (56.1 bits), Expect = 1.4e-47, Sum P(3) = 1.4e-47
Identities = 42/133 (31%), Positives = 68/133 (51%)
Query: 491 KRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVRE 550
+RK A+++ + +L Q + + L+ L S+ V D+ + + V+
Sbjct: 871 RRKRAVQESQSAKLHQASAQQRMRWQEKQRKRLEKRLQ---SMGVSNDSPSRHAVSFK-- 925
Query: 551 KGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQ 610
E V + I ++K HQ+ GI+FMW +++ KS + GC+LAHTMGLGKT Q
Sbjct: 926 --EPIVYLHPHIGQRVKLHQLSGIQFMWRELVED----KSQE---GCLLAHTMGLGKTMQ 976
Query: 611 VIAFLYTAMRSVN 623
VI+ L T + N
Sbjct: 977 VISLLVTITAAAN 989
Score = 40 (19.1 bits), Expect = 1.4e-47, Sum P(3) = 1.4e-47
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 190 VDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLS 248
VD T ++ + L ++ SLS TDD + + + + V ESS RSLS
Sbjct: 573 VDDTGAPGIIQGQFLENSPASLSPSGTDDAIISVSGKRRSTRGQVPRVFESS--SRSLS 629
Score = 38 (18.4 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 299 DECSTKLEDHSVSPENINDAATDNS 323
D T D ++SP+ + D +N+
Sbjct: 1295 DTRKTSDVDQAISPDRLGDGFIENA 1319
>UNIPROTKB|B3MMA5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7217 "Drosophila ananassae" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH902620 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 RefSeq:XP_001962644.1 STRING:B3MMA5
EnsemblMetazoa:FBtr0119036 GeneID:6497163 KEGG:dan:Dana_GF14336
FlyBase:FBgn0091363 InParanoid:B3MMA5 KO:K10875 OrthoDB:EOG4PC872
Uniprot:B3MMA5
Length = 791
Score = 396 (144.5 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 111/346 (32%), Positives = 178/346 (51%)
Query: 562 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 621
+S L+ HQ G+RFM+E + + K GD GCI+A MGLGKT Q + ++T +R
Sbjct: 155 LSNILRPHQREGVRFMYECV-----EGKKGDFN-GCIMADEMGLGKTLQCVTLVWTLLRQ 208
Query: 622 ---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRA 678
+ A++V+P +++ NW++EF KW L L + + R E + +
Sbjct: 209 GPESKPTINKAIVVSPSSLVKNWEKEFTKWLQGRLLCLAMEGGTKENTIRVLEQFSMTSS 268
Query: 679 KGG--VFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQ 736
K G V LI Y FR + EI + G +++CDE H +KN+ T Q
Sbjct: 269 KLGTPVLLISYETFR------------IYAEILCKYEVG--MVICDEGHRLKNSDNLTYQ 314
Query: 737 ALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNST 796
AL +K +RR+ L+G+P+QN+L EY+ +V+FV LG++ +F+ F+N I GQ+ +ST
Sbjct: 315 ALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENSILRGQNADST 374
Query: 797 SEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDL 856
+ K +++ L + + R ++ K LP K VI VKL+ +Q +LY FL+
Sbjct: 375 EGERKKAIEKTQELIGLVDQCIIRRTNQILTKYLPIKFEMVICVKLTAIQLQLYTNFLNS 434
Query: 857 HGFTNDRVS-NEKIRKSFFAGYQALAQIWNHPGILQL---TKDKGY 898
NEK + A L +I +HP ++ K+KG+
Sbjct: 435 DQVRRSLADCNEKASLTALADITTLKKICSHPDLIHQKIEAKEKGF 480
Score = 185 (70.2 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 53/153 (34%), Positives = 80/153 (52%)
Query: 945 NDLLHEHTYKEL--DYSGKMVLLLDILTMCSNMG-DKSLVFSQSIPTLDLIEFYLSKLPR 1001
N L + KE+ ++SGK +LL +L G DK ++ S TLDL E +L R
Sbjct: 485 NVLPSNYKPKEICPEWSGKFMLLDFMLAAIRAAGNDKVVLISNYTQTLDLFE----QLAR 540
Query: 1002 PGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSA 1061
K G + RLDG +R K+V++FN+P + ++S++AG G+NL A
Sbjct: 541 KRKYG--------FVRLDGTMSIKKRSKVVDKFNDP-DSECFLFMLSSKAGGCGLNLIGA 591
Query: 1062 NRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFL 1094
NR+ + D WNP D QA+ R WR K+ ++
Sbjct: 592 NRLFMFDPDWNPANDEQAMARVWRDGQKKPCYI 624
Score = 37 (18.1 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 773 LGSSHEFRNRFQNPIENGQHTNSTSEDVKI 802
+G S RN F P+ ++ + +D+++
Sbjct: 11 IGQSTASRNAFTPPLLQKKNKRACQKDLRL 40
>UNIPROTKB|B4MX21 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7260 "Drosophila willistoni" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH963857 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG
RefSeq:XP_002065674.1 STRING:B4MX21 EnsemblMetazoa:FBtr0246224
GeneID:6642593 KEGG:dwi:Dwil_GK15573 FlyBase:FBgn0217578
InParanoid:B4MX21 Uniprot:B4MX21
Length = 784
Score = 391 (142.7 bits), Expect = 1.7e-47, Sum P(2) = 1.7e-47
Identities = 105/344 (30%), Positives = 181/344 (52%)
Query: 562 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 621
+S L+ HQ G+RFM++ + + K G+ GCI+A MGLGKT Q + ++T +R
Sbjct: 149 LSNILRPHQREGVRFMYDCV-----EGKKGNFN-GCIMADEMGLGKTLQCVTLVWTLLRQ 202
Query: 622 ---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRA 678
+ A+IV+P +++ NW++EF KW + L +E S++ + L ++
Sbjct: 203 SCECKPTITKAIIVSPSSLVKNWEKEFTKWLHGRMHCLA---MEGGSKEDTIKALEQFSM 259
Query: 679 KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQAL 738
L G T +S+ R A +C Q+ +++CDE H +KN+ T QAL
Sbjct: 260 NTSTRL-G-TPVLLISYETF---RIYANILC---QNEVGMVICDEGHRLKNSDNLTYQAL 311
Query: 739 KQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSE 798
+K +RR+ L+G+P+QN+L EY+ +V+FV LG++ +F+ F+NPI GQ+T+S+ +
Sbjct: 312 MGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENPILKGQNTDSSDK 371
Query: 799 DVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHG 858
+ + +++ L + + R ++ K LP K VI V+L+ +Q Y FL
Sbjct: 372 ERERALEKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVICVRLTSVQLEFYTNFLKSDK 431
Query: 859 FTNDRVS-NEKIRKSFFAGYQALAQIWNHPGIL---QLTKDKGY 898
NEK + A L ++ +HP ++ L +DKG+
Sbjct: 432 VRRSLADCNEKASLTALADITTLKKLCSHPDLIYEKMLARDKGF 475
Score = 302 (111.4 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
Identities = 100/355 (28%), Positives = 169/355 (47%)
Query: 591 GDKGL--GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMK- 647
G KG GCI+A MGLGKT Q + ++T +R +T ++ +K
Sbjct: 170 GKKGNFNGCIMADEMGLGKTLQCVTLVWTLLRQ---SCECKPTITKAIIVS--PSSLVKN 224
Query: 648 WRPSELKPLRVFM----LEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRN 703
W K L M +E S++ + L ++ L G T +S+ R
Sbjct: 225 WEKEFTKWLHGRMHCLAMEGGSKEDTIKALEQFSMNTSTRL-G-TPVLLISYETF---RI 279
Query: 704 MAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYC 763
A +C Q+ +++CDE H +KN+ T QAL +K +RR+ L+G+P+QN+L EY+
Sbjct: 280 YANILC---QNEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFS 336
Query: 764 MVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDM 823
+V+FV LG++ +F+ F+NPI GQ+T+S+ ++ + +++ L + + R
Sbjct: 337 LVNFVNPEMLGTAADFKRNFENPILKGQNTDSSDKERERALEKTQELIGLVNQCIIRRTN 396
Query: 824 NVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVS-NEKIRKSFFAGYQALAQ 882
++ K LP K VI V+L+ +Q Y FL NEK + A L +
Sbjct: 397 QILTKYLPVKFEMVICVRLTSVQLEFYTNFLKSDKVRRSLADCNEKASLTALADITTLKK 456
Query: 883 IWNHPGIL---QLTKDKGYPSRXXXXXXXXXXNMDYNVV-IGEKPRNMNDFLQGK 933
+ +HP ++ L +DKG+ + N++ KP+++N L GK
Sbjct: 457 LCSHPDLIYEKMLARDKGFEN-------------SQNILPTNYKPKDLNPELSGK 498
Score = 190 (71.9 bits), Expect = 1.7e-47, Sum P(2) = 1.7e-47
Identities = 60/165 (36%), Positives = 86/165 (52%)
Query: 935 DDGFFQKDWWNDLLHEHTYKEL--DYSGKMVLLLDIL-TMCSNMGDKSLVFSQSIPTLDL 991
D GF N L + K+L + SGK +LL +L T+ +N DK ++ S TLDL
Sbjct: 472 DKGFENSQ--NILPTNYKPKDLNPELSGKFMLLDFMLATIRANSDDKVVLISNYTQTLDL 529
Query: 992 IEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTL--IST 1049
E +L R K+ + RLDG +R K+V+RFN+P N C L +S+
Sbjct: 530 FE----QLAR--------KRKYTFVRLDGTMTIKKRSKVVDRFNDPEND---CFLFMLSS 574
Query: 1050 RAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFL 1094
+AG G+NL ANR+ + D WNP D QA+ R WR K+ ++
Sbjct: 575 KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYI 619
Score = 39 (18.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 395 KTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS-LLKRLTSE 437
KTL C T V + ++C E + + + SPS L+K E
Sbjct: 188 KTLQCVTLVWTLLRQSC---ECKPTITKAIIVSPSSLVKNWEKE 228
>CGD|CAL0001568 [details] [associations]
symbol:RAD54 species:5476 "Candida albicans" [GO:0007067
"mitosis" evidence=IMP] [GO:0000085 "G2 phase of mitotic cell
cycle" evidence=IMP] [GO:0006997 "nucleus organization"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0015616 "DNA
translocase activity" evidence=IEA] [GO:0032392 "DNA geometric
change" evidence=IEA] [GO:0000722 "telomere maintenance via
recombination" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0032079 "positive regulation of endodeoxyribonuclease activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001568 GO:GO:0005524
GO:GO:0007067 GO:GO:0003677 GO:GO:0000085 GO:GO:0004386
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006997
KO:K10875 RefSeq:XP_722208.1 RefSeq:XP_722322.1
ProteinModelPortal:Q5AKX3 STRING:Q5AKX3 GeneID:3636027
GeneID:3636192 KEGG:cal:CaO19.12471 KEGG:cal:CaO19.5004
Uniprot:Q5AKX3
Length = 848
Score = 376 (137.4 bits), Expect = 2.5e-47, Sum P(2) = 2.5e-47
Identities = 108/377 (28%), Positives = 188/377 (49%)
Query: 540 ITGYIVNVVREKGEEAVRIPSSISAKL----KAHQVVGIRFMWENIIQSIRKVKSGDKGL 595
I G + N EK + +P I KL + HQ+ G++F++ I +
Sbjct: 227 ILGIVTNP-EEKLSKYPDVPVVIDPKLAKILRPHQIAGVKFLYRCTAGLIDA-----RAK 280
Query: 596 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRT---ALIVTPVNVLHNWKQEFMKWR-PS 651
GCI+A MGLGKT Q + ++T +R G RT +IV P +++ NW E +KW
Sbjct: 281 GCIMADEMGLGKTLQCLTLMWTLLRQSPRGKRTIEKCIIVCPSSLVRNWANEIVKWLGEG 340
Query: 652 ELKPLRVFMLEDVSRDRRAEL---LAKWRAKGG------VFLIGYTAFRNLSFGKHVKDR 702
L PL V D + +EL L +W G V +I Y R ++V D+
Sbjct: 341 ALTPLAV----DGKSTKNSELGTALQQWSTAQGRNIVRPVLIISYETLR-----RNV-DK 390
Query: 703 NMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYY 762
E+ +++ DE H +KN + T AL ++C+RR+ L+G+P+QN+L EY+
Sbjct: 391 LAGTEV--------GLMLADEGHRLKNGDSLTFTALNSLRCERRVILSGTPIQNDLSEYF 442
Query: 763 CMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMD 822
+++F G+LG+ EF+ ++N I G+ + ++ E+ + +++ + L + + F+ R
Sbjct: 443 SLLNFANPGYLGTRIEFKKNYENAILKGRDSTASDEEREKGDKKLNELSQMVSKFIIRRT 502
Query: 823 MNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSF----FAGYQ 878
+++ K LP K +V+ LSP+Q+ +Y F+ T+ + +K+ K
Sbjct: 503 NDILSKYLPIKYEYVLFTGLSPMQKDIYNHFI-----TSPEI--KKLMKGTGSQPLKAIG 555
Query: 879 ALAQIWNHPGILQLTKD 895
L ++ NHP +L L +D
Sbjct: 556 MLKKLCNHPDLLDLPED 572
Score = 206 (77.6 bits), Expect = 2.5e-47, Sum P(2) = 2.5e-47
Identities = 55/138 (39%), Positives = 77/138 (55%)
Query: 958 YSGKMVLLLDILTMCSN-MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWY 1016
+SGK ++L L + DK ++ S TLDLIE K+ R K G L
Sbjct: 603 FSGKFLILERFLQKINKETDDKIVLISNYTQTLDLIE----KMCRYKKYGVL-------- 650
Query: 1017 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1076
RLDG ++RQKLV++FN+P N L+S++AG GINL ANR++++D WNP D
Sbjct: 651 RLDGTMNINKRQKLVDKFNDP-NGPEFIFLLSSKAGGCGINLIGANRLVLMDPDWNPASD 709
Query: 1077 LQAIYRAWRCMDKQSQFL 1094
QA+ R WR K+ F+
Sbjct: 710 QQALARVWRDGQKKDCFI 727
>UNIPROTKB|Q5AKX3 [details] [associations]
symbol:RAD54 "Putative uncharacterized protein RAD54"
species:237561 "Candida albicans SC5314" [GO:0000085 "G2 phase of
mitotic cell cycle" evidence=IMP] [GO:0006997 "nucleus
organization" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001568 GO:GO:0005524 GO:GO:0007067
GO:GO:0003677 GO:GO:0000085 GO:GO:0004386 EMBL:AACQ01000010
EMBL:AACQ01000009 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006997 KO:K10875 RefSeq:XP_722208.1
RefSeq:XP_722322.1 ProteinModelPortal:Q5AKX3 STRING:Q5AKX3
GeneID:3636027 GeneID:3636192 KEGG:cal:CaO19.12471
KEGG:cal:CaO19.5004 Uniprot:Q5AKX3
Length = 848
Score = 376 (137.4 bits), Expect = 2.5e-47, Sum P(2) = 2.5e-47
Identities = 108/377 (28%), Positives = 188/377 (49%)
Query: 540 ITGYIVNVVREKGEEAVRIPSSISAKL----KAHQVVGIRFMWENIIQSIRKVKSGDKGL 595
I G + N EK + +P I KL + HQ+ G++F++ I +
Sbjct: 227 ILGIVTNP-EEKLSKYPDVPVVIDPKLAKILRPHQIAGVKFLYRCTAGLIDA-----RAK 280
Query: 596 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRT---ALIVTPVNVLHNWKQEFMKWR-PS 651
GCI+A MGLGKT Q + ++T +R G RT +IV P +++ NW E +KW
Sbjct: 281 GCIMADEMGLGKTLQCLTLMWTLLRQSPRGKRTIEKCIIVCPSSLVRNWANEIVKWLGEG 340
Query: 652 ELKPLRVFMLEDVSRDRRAEL---LAKWRAKGG------VFLIGYTAFRNLSFGKHVKDR 702
L PL V D + +EL L +W G V +I Y R ++V D+
Sbjct: 341 ALTPLAV----DGKSTKNSELGTALQQWSTAQGRNIVRPVLIISYETLR-----RNV-DK 390
Query: 703 NMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYY 762
E+ +++ DE H +KN + T AL ++C+RR+ L+G+P+QN+L EY+
Sbjct: 391 LAGTEV--------GLMLADEGHRLKNGDSLTFTALNSLRCERRVILSGTPIQNDLSEYF 442
Query: 763 CMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMD 822
+++F G+LG+ EF+ ++N I G+ + ++ E+ + +++ + L + + F+ R
Sbjct: 443 SLLNFANPGYLGTRIEFKKNYENAILKGRDSTASDEEREKGDKKLNELSQMVSKFIIRRT 502
Query: 823 MNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSF----FAGYQ 878
+++ K LP K +V+ LSP+Q+ +Y F+ T+ + +K+ K
Sbjct: 503 NDILSKYLPIKYEYVLFTGLSPMQKDIYNHFI-----TSPEI--KKLMKGTGSQPLKAIG 555
Query: 879 ALAQIWNHPGILQLTKD 895
L ++ NHP +L L +D
Sbjct: 556 MLKKLCNHPDLLDLPED 572
Score = 206 (77.6 bits), Expect = 2.5e-47, Sum P(2) = 2.5e-47
Identities = 55/138 (39%), Positives = 77/138 (55%)
Query: 958 YSGKMVLLLDILTMCSN-MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWY 1016
+SGK ++L L + DK ++ S TLDLIE K+ R K G L
Sbjct: 603 FSGKFLILERFLQKINKETDDKIVLISNYTQTLDLIE----KMCRYKKYGVL-------- 650
Query: 1017 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1076
RLDG ++RQKLV++FN+P N L+S++AG GINL ANR++++D WNP D
Sbjct: 651 RLDGTMNINKRQKLVDKFNDP-NGPEFIFLLSSKAGGCGINLIGANRLVLMDPDWNPASD 709
Query: 1077 LQAIYRAWRCMDKQSQFL 1094
QA+ R WR K+ F+
Sbjct: 710 QQALARVWRDGQKKDCFI 727
>UNIPROTKB|B4KHL5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7230 "Drosophila mojavensis" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH933807 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043150 GO:GO:0000711 KO:K10875
OrthoDB:EOG4PC872 RefSeq:XP_002002852.1 EnsemblMetazoa:FBtr0161485
GeneID:6576868 KEGG:dmo:Dmoj_GI10760 FlyBase:FBgn0133523
InParanoid:B4KHL5 Uniprot:B4KHL5
Length = 783
Score = 399 (145.5 bits), Expect = 3.0e-47, Sum P(2) = 3.0e-47
Identities = 109/347 (31%), Positives = 179/347 (51%)
Query: 562 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 621
+S L+ HQ G+RFM+E + + K G+ GCI+A MGLGKT Q + +T +R
Sbjct: 145 LSNVLRPHQREGVRFMYECV-----EGKRGNFN-GCIMADEMGLGKTLQCVTLTWTLLRQ 198
Query: 622 ---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVF--MLEDVSRD-RRAELLAK 675
+ A+IV+P +++ NW++EF KW + L + ED +R + +
Sbjct: 199 SPDCKPTISKAIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEDTTRALEQFAMNTA 258
Query: 676 WRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTT 735
R V LI Y FR + H+ +C + G +++CDE H +KN+ T
Sbjct: 259 TRCGTPVLLISYETFRLYA---HI--------LCKT-EVG--MVICDEGHRLKNSDNLTY 304
Query: 736 QALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNS 795
QAL +K +RR+ L+G+P+QN+L EY+ +V+FV LG++ +F+ F+N I GQ+ +S
Sbjct: 305 QALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENSILRGQNADS 364
Query: 796 TSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLD 855
T + + Q++ L + + R ++ K LP K V+ VKL+P+Q ++Y FL
Sbjct: 365 TDAERQRALQKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVVCVKLTPVQLQIYTNFLK 424
Query: 856 LHGFTNDRVS-NEKIRKSFFAGYQALAQIWNHPGILQ---LTKDKGY 898
NEK + A L ++ NHP ++ K+KG+
Sbjct: 425 SDQVRRSLADCNEKASLTALADITTLKKLCNHPDLIYEKIAAKEKGF 471
Score = 179 (68.1 bits), Expect = 3.0e-47, Sum P(2) = 3.0e-47
Identities = 51/141 (36%), Positives = 74/141 (52%)
Query: 957 DYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
+ SGK +LL +L +N DK ++ S TLDL E +L R K+ +
Sbjct: 490 ELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLFE----QLAR--------KRKYTY 537
Query: 1016 YRLDGRTESSERQKLVERFNEPLNKRVKCTL--ISTRAGSLGINLHSANRVIIVDGSWNP 1073
RLDG +R K+V+RFN+P C L +S++AG G+NL ANR+ + D WNP
Sbjct: 538 VRLDGTMTIKKRSKVVDRFNDP---STDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNP 594
Query: 1074 TYDLQAIYRAWRCMDKQSQFL 1094
D QA+ R WR K+ ++
Sbjct: 595 ANDEQAMARVWRDGQKKPCYI 615
>POMBASE|SPAC15A10.03c [details] [associations]
symbol:rad54 "DNA-dependent ATPase Rad54/Rhp54"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISM] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005819 "spindle"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0006311
"meiotic gene conversion" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0015616 "DNA translocase activity"
evidence=ISO] [GO:0030491 "heteroduplex formation" evidence=ISO]
[GO:0033170 "protein-DNA loading ATPase activity" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC15A10.03c GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005819 GO:GO:0006338
GO:GO:0000724 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007131 GO:GO:0006311
GO:GO:0015616 HOGENOM:HOG000204521 GO:GO:0033170 GO:GO:0030491
KO:K10875 EMBL:Z29640 PIR:S41886 RefSeq:NP_594290.1
ProteinModelPortal:P41410 IntAct:P41410 STRING:P41410
EnsemblFungi:SPAC15A10.03c.1 GeneID:2542749 KEGG:spo:SPAC15A10.03c
OMA:LSEYFAL OrthoDB:EOG4T1MVP NextBio:20803794 Uniprot:P41410
Length = 852
Score = 388 (141.6 bits), Expect = 7.3e-47, Sum P(2) = 7.3e-47
Identities = 107/348 (30%), Positives = 183/348 (52%)
Query: 555 AVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAF 614
AV I ++ L+ HQ+ G++F+++ + I + +G CI+A MGLGKT Q IA
Sbjct: 253 AVVIDPKLARILRPHQIEGVKFLYKCVTGRIDRCANG-----CIMADEMGLGKTLQCIAL 307
Query: 615 LYTAMR-SVNLGLRT---ALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRA 670
L+T ++ S G T A+I P +++ NW E +KW + + F+L+ + +
Sbjct: 308 LWTLLKQSPQAGKPTIEKAIITCPSSLVKNWANELVKWLGKDA--ITPFILD--GKSSKQ 363
Query: 671 ELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNT 730
EL+ + V G R + + R+ + +A + G +L+CDE H +KN+
Sbjct: 364 ELIMALQQWASVH--GRQVTRPVLIASYETLRSYVEHLNNA-EIG--MLLCDEGHRLKNS 418
Query: 731 RADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENG 790
+ T AL ++ QRR+ L+G+P+QN+L EY+ +++F G LGS EFR ++ PI G
Sbjct: 419 DSLTFTALDKLNVQRRVILSGTPIQNDLSEYFSLLNFANPGLLGSRQEFRKNYEIPILKG 478
Query: 791 QHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLY 850
+ + T +D + + + L + + F+ R +++ K LP K V+ LS Q LY
Sbjct: 479 RDADGTEKDKENGDAKLAELAKIVNRFIIRRTNDILSKYLPVKYEHVVFCNLSEFQLSLY 538
Query: 851 KRFLDLHGFTNDRVSNEKIRKSFFAGYQA---LAQIWNHPGILQLTKD 895
K F+ T+ + N+ +R + +A L +I NHP +L LT+D
Sbjct: 539 KHFI-----TSPEI-NKILRGTGSQPLKAIGLLKKICNHPDLLNLTED 580
Score = 189 (71.6 bits), Expect = 7.3e-47, Sum P(2) = 7.3e-47
Identities = 53/137 (38%), Positives = 73/137 (53%)
Query: 959 SGKMVLLLDILTMCSN-MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYR 1017
SGKM++L +L DK ++ S TLDL E +L R +G R
Sbjct: 609 SGKMLVLERMLYQIKQETDDKIVLISNYTSTLDLFE----QLCRA--------RGYKALR 656
Query: 1018 LDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDL 1077
LDG ++RQ+LV+ FN+P K L+S++AG GINL ANR+I+ D WNP D
Sbjct: 657 LDGTMNVNKRQRLVDTFNDP-EKDAFVFLLSSKAGGCGINLIGANRLILFDPDWNPAADQ 715
Query: 1078 QAIYRAWRCMDKQSQFL 1094
QA+ R WR K+ F+
Sbjct: 716 QALARVWRDGQKKDCFV 732
Score = 41 (19.5 bits), Expect = 2.5e-31, Sum P(2) = 2.5e-31
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 976 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQ 1005
GD S + PTLD IE +L K GKQ
Sbjct: 813 GDTSTWNHFTNPTLDRIEDHLLKR-EAGKQ 841
Score = 37 (18.1 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 132 PFVADAIANEKELALSEEQ 150
PF+ D ++++EL ++ +Q
Sbjct: 353 PFILDGKSSKQELIMALQQ 371
>WB|WBGene00004298 [details] [associations]
symbol:rad-54 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0033554 "cellular
response to stress" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0033554 GO:GO:0003677 GO:GO:0004386
EMBL:AL034364 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG EMBL:AL110471
PIR:T26238 RefSeq:NP_492438.1 ProteinModelPortal:G5EEN6 SMR:G5EEN6
IntAct:G5EEN6 EnsemblMetazoa:W06D4.6 GeneID:172728
KEGG:cel:CELE_W06D4.6 CTD:172728 WormBase:W06D4.6 NextBio:876761
Uniprot:G5EEN6
Length = 818
Score = 384 (140.2 bits), Expect = 7.9e-47, Sum P(2) = 7.9e-47
Identities = 104/329 (31%), Positives = 169/329 (51%)
Query: 566 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLG 625
L+ HQ G++FMW+ + I + GCI+A MGLGKT Q I+ L+T +R
Sbjct: 202 LRPHQRDGVKFMWD-CVTGINIPEFH----GCIMADEMGLGKTLQCISLLWTLLRQSPDA 256
Query: 626 LRT---ALIVTPVNVLHNWKQEFMKWRPSELK--PLRVFMLEDVSRDRRAELL-AKWRAK 679
T ++IV P +++ NW +E KW + L P+ E + + + +K R
Sbjct: 257 CPTVSKSIIVCPSSLVKNWDKEIKKWLGTRLNAMPVDSGKREQIIACLNSFMADSKMRCA 316
Query: 680 GGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALK 739
V +I Y FR + I H+ G I++CDE H +KN+ T QAL
Sbjct: 317 IPVLIISYETFR------------LYANILHSGDVG--IVICDEGHRLKNSENLTYQALS 362
Query: 740 QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSED 799
+KC RR+ ++G+P+QN+L+EY+ +V+FV G LG++ EFR +F+N I G+ +++SED
Sbjct: 363 GLKCARRVLISGTPIQNDLLEYFSLVNFVNPGLLGTASEFRKKFENAILKGRDADASSED 422
Query: 800 VKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGF 859
K +++ + ++ + R ++ K LP K +I K S LQ LY + ++
Sbjct: 423 QKKGEEKTKEMISLVEKCIIRRTSALLTKYLPVKYEHIICCKNSTLQETLYNKLIECEK- 481
Query: 860 TNDRVSNEK-IRKSFFAGYQALAQIWNHP 887
N V +K S + L ++ NHP
Sbjct: 482 QNRIVEKDKGATASALSFITHLKKLCNHP 510
Score = 192 (72.6 bits), Expect = 7.9e-47, Sum P(2) = 7.9e-47
Identities = 50/138 (36%), Positives = 74/138 (53%)
Query: 958 YSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWY 1016
+SGKM +L IL + DK ++ S T+D L KL +G D+
Sbjct: 545 FSGKMKVLDYILAVTRKTTDDKFVLVSNYTQTIDQF-MELCKL-----------RGYDFV 592
Query: 1017 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1076
RLDG +R K+V+ FN+P + + C L+S++AG G+NL ANR+++ D WNP D
Sbjct: 593 RLDGSMSIKQRSKIVDTFNDPAST-IFCFLLSSKAGGCGLNLIGANRLVMFDPDWNPAND 651
Query: 1077 LQAIYRAWRCMDKQSQFL 1094
QA+ R WR K+ F+
Sbjct: 652 DQAMARVWRDGQKKMCFI 669
>FB|FBgn0002989 [details] [associations]
symbol:okr "okra" species:7227 "Drosophila melanogaster"
[GO:0046843 "dorsal appendage formation" evidence=IMP] [GO:0048477
"oogenesis" evidence=IGI;IMP;TAS] [GO:0006302 "double-strand break
repair" evidence=IMP;TAS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=TAS] [GO:0006417 "regulation of translation" evidence=TAS]
[GO:0007131 "reciprocal meiotic recombination" evidence=TAS]
[GO:0030261 "chromosome condensation" evidence=TAS] [GO:0006281
"DNA repair" evidence=NAS] [GO:0010212 "response to ionizing
radiation" evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0006338 "chromatin remodeling" evidence=IMP] [GO:0045003
"double-strand break repair via synthesis-dependent strand
annealing" evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006417 GO:GO:0051301 GO:GO:0007067 EMBL:AE014134
GO:GO:0003677 GO:GO:0010212 GO:GO:0006338 GO:GO:0004386
GO:GO:0030261 GO:GO:0008298 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0046843 GO:GO:0007131
GeneTree:ENSGT00550000074619 GO:GO:0045003 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG EMBL:Y10229
EMBL:AF069779 EMBL:AF069780 EMBL:AY069599 EMBL:FJ219215
EMBL:FJ219218 EMBL:FJ219219 EMBL:FJ219220 EMBL:FJ219221
EMBL:FJ219222 EMBL:FJ219223 EMBL:FJ219224 EMBL:FJ219225
EMBL:FJ219226 EMBL:FJ219227 EMBL:FJ219228 EMBL:FJ219229
EMBL:FJ219230 EMBL:FJ219231 EMBL:FJ219232 EMBL:FJ219233
EMBL:FJ219234 EMBL:FJ219235 EMBL:FJ219236 EMBL:FJ219237
EMBL:FJ219238 EMBL:FJ219239 EMBL:FJ219240 EMBL:FJ219241
EMBL:FJ219242 EMBL:FJ219243 EMBL:FJ219244 EMBL:FJ219245
EMBL:FJ219246 EMBL:FJ219247 RefSeq:NP_476661.1 UniGene:Dm.19774
ProteinModelPortal:O76460 SMR:O76460 IntAct:O76460 MINT:MINT-807919
STRING:O76460 PRIDE:O76460 EnsemblMetazoa:FBtr0077673 GeneID:33507
KEGG:dme:Dmel_CG3736 UCSC:CG3736-RA CTD:33507 FlyBase:FBgn0002989
InParanoid:O76460 PhylomeDB:O76460 GenomeRNAi:33507 NextBio:783944
Bgee:O76460 Uniprot:O76460
Length = 784
Score = 389 (142.0 bits), Expect = 2.5e-46, Sum P(2) = 2.5e-46
Identities = 109/346 (31%), Positives = 177/346 (51%)
Query: 562 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 621
+S L+ HQ G+RFM+E + + K G+ GCI+A MGLGKT Q + ++T +R
Sbjct: 152 LSNILRPHQREGVRFMYECV-----EGKRGNFN-GCIMADEMGLGKTLQCVTLVWTLLRQ 205
Query: 622 ---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELK--PLRVFMLEDVSRDRRAELLAKW 676
+ A++V+P +++ NW++EF KW L P+ E+ R +
Sbjct: 206 GPECKPTINKAIVVSPSSLVKNWEKEFTKWLHGRLLCLPMEGGTKENTIRALEQFSMTSA 265
Query: 677 RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQ 736
R V LI Y FR + EI + G +++CDE H +KN+ T Q
Sbjct: 266 RLGTPVLLISYETFR------------IYAEILCKYEVG--MVICDEGHRLKNSDNLTYQ 311
Query: 737 ALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNST 796
AL +K +RR+ L+G+P+QN+L EYY +V+FV LG++ F+ F++ I GQ+T+ST
Sbjct: 312 ALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDST 371
Query: 797 SEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDL 856
++ + +++ L + + R ++ K LP K VI KL+ +Q LY FL
Sbjct: 372 EQERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICAKLTAIQLELYTNFLKS 431
Query: 857 HGFTNDRVS-NEKIRKSFFAGYQALAQIWNHPGIL--QLT-KDKGY 898
NEK + A L +I +HP ++ +LT ++KG+
Sbjct: 432 DQVRRSLADCNEKASLTALADITTLKKICSHPDLIYEKLTAREKGF 477
Score = 263 (97.6 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 70/221 (31%), Positives = 117/221 (52%)
Query: 718 ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
+++CDE H +KN+ T QAL +K +RR+ L+G+P+QN+L EYY +V+FV LG++
Sbjct: 293 MVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAA 352
Query: 778 EFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFV 837
F+ F++ I GQ+T+ST ++ + +++ L + + R ++ K LP K V
Sbjct: 353 VFKRNFESAILRGQNTDSTEQERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMV 412
Query: 838 ITVKLSPLQRRLYKRFLDLHGFTNDRVS-NEKIRKSFFAGYQALAQIWNHPGIL--QLT- 893
I KL+ +Q LY FL NEK + A L +I +HP ++ +LT
Sbjct: 413 ICAKLTAIQLELYTNFLKSDQVRRSLADCNEKASLTALADITTLKKICSHPDLIYEKLTA 472
Query: 894 KDKGYPSRXXXXXXXXXXNMDYNVVIGE-KPRNMNDFLQGK 933
++KG+ + NV+ KP+++N L GK
Sbjct: 473 REKGFEN-------------SQNVLPSNYKPKDLNPELSGK 500
Score = 181 (68.8 bits), Expect = 2.5e-46, Sum P(2) = 2.5e-46
Identities = 54/153 (35%), Positives = 79/153 (51%)
Query: 945 NDLLHEHTYKEL--DYSGKMVLLLDILTMCSNMG-DKSLVFSQSIPTLDLIEFYLSKLPR 1001
N L + K+L + SGK +LL +L G DK ++ S TLDL E +L R
Sbjct: 482 NVLPSNYKPKDLNPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFE----QLAR 537
Query: 1002 PGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSA 1061
K G + RLDG +R K+V+RFN+P + ++S++AG G+NL A
Sbjct: 538 KRKYG--------FVRLDGTMSIKKRSKVVDRFNDPESDSF-LFMLSSKAGGCGLNLIGA 588
Query: 1062 NRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFL 1094
NR+ + D WNP D QA+ R WR K+ ++
Sbjct: 589 NRLFMFDPDWNPANDEQAMARVWRDGQKKPCYI 621
>UNIPROTKB|B3NAN8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7220 "Drosophila erecta" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CH954177
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001968502.1
EnsemblMetazoa:FBtr0144523 GeneID:6543248 KEGG:der:Dere_GG24469
FlyBase:FBgn0116601 Uniprot:B3NAN8
Length = 784
Score = 384 (140.2 bits), Expect = 3.4e-46, Sum P(2) = 3.4e-46
Identities = 112/350 (32%), Positives = 176/350 (50%)
Query: 562 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 621
+S L+ HQ G+RFM+E + + K G+ GCI+A MGLGKT Q + ++T +R
Sbjct: 152 LSNILRPHQREGVRFMYECV-----EGKRGNFN-GCIMADEMGLGKTLQCVTLVWTLLRQ 205
Query: 622 ---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELK--PLRVFMLEDVSRDRRAELLAKW 676
+ A++V+P +++ NW++EF KW L P+ E+ R +
Sbjct: 206 GPECKPTINKAIVVSPSSLVKNWEKEFTKWLQGRLLCLPMEGGTKENTIRALEQFSMTSS 265
Query: 677 RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQ 736
R V LI Y FR + EI + G +++CDE H +KN+ T Q
Sbjct: 266 RLGTPVLLISYETFR------------IYAEILCKYEVG--MVICDEGHRLKNSDNLTYQ 311
Query: 737 ALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNST 796
AL +K +RR+ L+G+P+QN+L EYY +V+FV LG++ F+ F++ I GQ+T+ST
Sbjct: 312 ALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDST 371
Query: 797 SEDVKIMNQRSHILYEQLKGFVQ----RMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKR 852
+ QR+ ++L G V R ++ K LP K VI KL+ +Q LY
Sbjct: 372 DAE----RQRAIAKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICAKLTSIQLELYTN 427
Query: 853 FLDLHGFTNDRVS-NEKIRKSFFAGYQALAQIWNHPGIL--QLT-KDKGY 898
FL EK + A L +I +HP ++ ++T +DKG+
Sbjct: 428 FLKSDQVRRSLADCKEKASLTALADITTLKKICSHPNLIYEKITARDKGF 477
Score = 185 (70.2 bits), Expect = 3.4e-46, Sum P(2) = 3.4e-46
Identities = 57/163 (34%), Positives = 82/163 (50%)
Query: 935 DDGFFQKDWWNDLLHEHTYKEL--DYSGKMVLLLDILTMCSNMG-DKSLVFSQSIPTLDL 991
D GF N L + K+L + SGK +LL +L G DK ++ S TLDL
Sbjct: 474 DKGFENSQ--NVLPSNYNAKDLNPELSGKFMLLDFMLAAIRADGNDKVVLISNYTQTLDL 531
Query: 992 IEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRA 1051
E +L R K G + RLDG +R K+V+RFN+P + ++S++A
Sbjct: 532 FE----QLARKRKYG--------FVRLDGTMSIKKRSKVVDRFNDPESDSF-LFMLSSKA 578
Query: 1052 GSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFL 1094
G G+NL ANR+ + D WNP D QA+ R WR K+ ++
Sbjct: 579 GGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYI 621
>UNIPROTKB|B4NXB8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7245 "Drosophila yakuba" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CM000157
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043150 GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872
EMBL:FJ219212 RefSeq:XP_002087763.1 STRING:B4NXB8 GeneID:6526655
KEGG:dya:Dyak_GE14966 FlyBase:FBgn0232556 Uniprot:B4NXB8
Length = 784
Score = 384 (140.2 bits), Expect = 7.0e-46, Sum P(2) = 7.0e-46
Identities = 108/346 (31%), Positives = 176/346 (50%)
Query: 562 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 621
+S L+ HQ G+RFM+E + + K G+ GCI+A MGLGKT Q + ++T +R
Sbjct: 152 LSNILRPHQREGVRFMYECV-----EGKRGNFN-GCIMADEMGLGKTLQCVTLVWTLLRQ 205
Query: 622 ---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELK--PLRVFMLEDVSRDRRAELLAKW 676
+ A++V+P +++ NW++EF KW L P+ E+ R +
Sbjct: 206 GPECKPTINKAIVVSPSSLVKNWEKEFTKWLQGRLLCLPMEGGTKENTIRALEQFSMTSS 265
Query: 677 RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQ 736
R V LI Y FR + EI + G +++CDE H +KN+ T Q
Sbjct: 266 RLGTPVLLISYETFR------------IYAEILCKYEVG--MVICDEGHRLKNSDNLTYQ 311
Query: 737 ALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNST 796
AL +K +RR+ L+G+P+QN+L EYY +V+FV LG++ F+ F++ I GQ+T+ST
Sbjct: 312 ALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDST 371
Query: 797 SEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDL 856
+ + +++ L + + R ++ K LP K VI KL+ +Q LY FL
Sbjct: 372 EGERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICAKLTSIQLELYTNFLKS 431
Query: 857 HGFTNDRVS-NEKIRKSFFAGYQALAQIWNHPGIL--QLT-KDKGY 898
NEK + A L +I +HP ++ ++T ++KG+
Sbjct: 432 DQVRRSLADCNEKASLTALADITTLKKICSHPDLIYEKITAREKGF 477
Score = 182 (69.1 bits), Expect = 7.0e-46, Sum P(2) = 7.0e-46
Identities = 54/153 (35%), Positives = 79/153 (51%)
Query: 945 NDLLHEHTYKEL--DYSGKMVLLLDILTMCSNMG-DKSLVFSQSIPTLDLIEFYLSKLPR 1001
N L + K+L + SGK +LL +L G DK ++ S TLDL E +L R
Sbjct: 482 NVLPSNYNTKDLNPELSGKFMLLDFMLAAIRADGNDKVVLISNYTQTLDLFE----QLAR 537
Query: 1002 PGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSA 1061
K G + RLDG +R K+V+RFN+P + ++S++AG G+NL A
Sbjct: 538 KRKYG--------FVRLDGTMSIKKRSKVVDRFNDPESDSF-LFMLSSKAGGCGLNLIGA 588
Query: 1062 NRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFL 1094
NR+ + D WNP D QA+ R WR K+ ++
Sbjct: 589 NRLFMFDPDWNPANDEQAMARVWRDGQKKPCYI 621
>UNIPROTKB|B4M9A8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7244 "Drosophila virilis" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CH940654
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043150 GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG
RefSeq:XP_002057711.1 STRING:B4M9A8 EnsemblMetazoa:FBtr0234205
GeneID:6634100 KEGG:dvi:Dvir_GJ18280 FlyBase:FBgn0205441
InParanoid:B4M9A8 Uniprot:B4M9A8
Length = 786
Score = 377 (137.8 bits), Expect = 7.0e-45, Sum P(2) = 7.0e-45
Identities = 104/347 (29%), Positives = 175/347 (50%)
Query: 562 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 621
+S L+ HQ G+RFM+E + + K G+ GCI+A MGLGKT Q + +T +R
Sbjct: 145 LSNVLRPHQREGVRFMYECV-----EGKRGNFN-GCIMADEMGLGKTLQCVTLTWTLLRQ 198
Query: 622 ---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVF--MLEDVSRD-RRAELLAK 675
+ A++V+P +++ NW++EF KW + L + ED +R + +
Sbjct: 199 SPDCKPTISKAIVVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEDTTRTLEQFAMNTA 258
Query: 676 WRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTT 735
R V LI Y FR S H+ +C + G +++CDE H +KN+ T
Sbjct: 259 TRCGTPVLLISYETFRLYS---HI--------LCKT-EVG--MVICDEGHRLKNSDNLTY 304
Query: 736 QALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNS 795
QAL +K +RR+ L+G+P+QN+L EY+ +V+FV LG+ +F+ F+N I GQ+ +S
Sbjct: 305 QALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTGSDFKRNFENAILRGQNADS 364
Query: 796 TSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLD 855
T + + +++ L + + R ++ K LP K V+ KL+ +Q +LY FL
Sbjct: 365 TDAERERALEKTQELVGLVNQCIIRRTNQILTKYLPVKFEMVVCAKLTAVQLQLYTNFLK 424
Query: 856 LHGFTNDRVS-NEKIRKSFFAGYQALAQIWNHPGILQ---LTKDKGY 898
+K + A L ++ NHP ++ ++KG+
Sbjct: 425 SDQVRRSLADCTDKTTLTALADITTLKKLCNHPDLIYEKIAAREKGF 471
Score = 180 (68.4 bits), Expect = 7.0e-45, Sum P(2) = 7.0e-45
Identities = 51/141 (36%), Positives = 74/141 (52%)
Query: 957 DYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
+ SGK +LL +L +N DK ++ S TLDL E +L R K+ +
Sbjct: 490 ELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLFE----QLAR--------KRKYSY 537
Query: 1016 YRLDGRTESSERQKLVERFNEPLNKRVKCTL--ISTRAGSLGINLHSANRVIIVDGSWNP 1073
RLDG +R K+V+RFN+P C L +S++AG G+NL ANR+ + D WNP
Sbjct: 538 VRLDGTMTIKKRSKVVDRFNDPATD---CFLFMLSSKAGGCGLNLIGANRLFMFDPDWNP 594
Query: 1074 TYDLQAIYRAWRCMDKQSQFL 1094
D QA+ R WR K+ ++
Sbjct: 595 ANDEQAMARVWRDGQKKPCYI 615
>UNIPROTKB|F1P5M3 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 IPI:IPI00590839
OMA:VCKRHGY EMBL:AADN02024876 EMBL:AADN02024875
Ensembl:ENSGALT00000025712 Uniprot:F1P5M3
Length = 920
Score = 272 (100.8 bits), Expect = 1.3e-44, Sum P(3) = 1.3e-44
Identities = 64/185 (34%), Positives = 103/185 (55%)
Query: 717 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 776
++L+CDE H +KN+ TT AL + C+RRI LTG+P+QN+L E+Y +++FV G LGS
Sbjct: 433 NLLICDEGHRLKNSSIKTTTALTNLSCERRIILTGTPIQNDLQEFYALIEFVNPGVLGSL 492
Query: 777 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKKDLPPKTV 835
+R ++ PI + ++T E+ + +R+ L +L G F+ R V+ K LPPK
Sbjct: 493 STYRKIYEEPIVRSREPSATKEEKDLGEKRAAEL-TRLTGLFILRRTQEVINKFLPPKKE 551
Query: 836 FVITVKLSPLQRRLYKRFLD---LHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL-Q 891
+I + + LQ LY++ L + R+ N G AL ++ NHP +L +
Sbjct: 552 NIIFCQPTALQLELYQKLLSSRVISSCLQGRLENSP--HLICIG--ALKKLCNHPCLLFK 607
Query: 892 LTKDK 896
K+K
Sbjct: 608 ALKEK 612
Score = 172 (65.6 bits), Expect = 1.3e-44, Sum P(3) = 1.3e-44
Identities = 47/147 (31%), Positives = 77/147 (52%)
Query: 939 FQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSK 998
F +D+ +D T+ E+D SGK+ +L+ +L + S + L+ Y
Sbjct: 634 FPQDYTSD-----TFSEID-SGKLQVLVKLLAAIRELS------SSERQVVVLVSNYTQT 681
Query: 999 LPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINL 1058
L + K + G + RLDG T S+RQ++V+ FN + L+S++AG +G+NL
Sbjct: 682 LNVLQETCKCY--GYSYTRLDGNTPVSQRQQIVDSFNSKFSPAF-IFLLSSKAGGVGLNL 738
Query: 1059 HSANRVIIVDGSWNPTYDLQAIYRAWR 1085
A+ +I+ D WNP D+QA+ R WR
Sbjct: 739 VGASHLILYDIDWNPATDIQAMARVWR 765
Score = 167 (63.8 bits), Expect = 1.3e-44, Sum P(3) = 1.3e-44
Identities = 47/114 (41%), Positives = 66/114 (57%)
Query: 562 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 621
I+ L+ HQ GI F++E + +R SG G ILA MGLGKT Q I+ ++T +R
Sbjct: 299 IANNLRPHQREGIVFLYE-CVMGMRV--SGR--FGAILADEMGLGKTLQCISLVWTLLRQ 353
Query: 622 VNLG----LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAE 671
G L+ ALIVTP +++ NWK+EF KW SE ++VF V +D + E
Sbjct: 354 GVYGCKPVLKRALIVTPGSLVKNWKKEFQKWLGSER--IKVFT---VDQDHKVE 402
>ASPGD|ASPL0000027956 [details] [associations]
symbol:AN10677 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005819 "spindle"
evidence=IEA] [GO:0006311 "meiotic gene conversion" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:BN001305 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:LSEYFAL
EnsemblFungi:CADANIAT00003558 Uniprot:C8VG87
Length = 833
Score = 354 (129.7 bits), Expect = 1.4e-44, Sum P(3) = 1.4e-44
Identities = 109/359 (30%), Positives = 173/359 (48%)
Query: 548 VREKGEEAVRIPSSIS---AK-LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTM 603
+++K E ++P I AK L+ HQV +F++ I + GCI+A M
Sbjct: 221 LKKKVENRPKVPVVIDPRLAKVLRPHQV---QFLYRCTTGMIDR-----NAHGCIMADGM 272
Query: 604 GLGKTFQVIAFLYTAMR-SVNLGLRT---ALIVTPVNVLHNWKQEFMKWRPSELKPLRVF 659
GLGKT Q I+ ++T ++ S G T +I P +++ NW E KW + + F
Sbjct: 273 GLGKTLQCISLMWTLLKQSPEAGKTTIQKCIIACPSSLVGNWANELGKWLGKDT--ITPF 330
Query: 660 MLED-VSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGP-D 717
++ S+ L +W G ++ +S+ R L+D P
Sbjct: 331 AVDGKASKTELTSQLKQWAISSGRSIVRPVLI--VSY-------ETLRMYVDTLKDSPIG 381
Query: 718 ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
+L+CDE H +KN + T AL + QRR+ L+G+P+QN+L EY+ +++F LGS +
Sbjct: 382 LLLCDEGHRLKNKESLTWTALNSLNVQRRVILSGTPIQNDLSEYFALLNFANPDLLGSQN 441
Query: 778 EFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFV 837
EFR RF+ PI G+ T ED K ++R L + F+ R +++ K LP K V
Sbjct: 442 EFRKRFEIPILKGRDAAGTEEDRKKGDERLAELSSIVNKFIIRRTNDILSKYLPVKYEHV 501
Query: 838 ITVKLSPLQRRLYKRFLDLHGFTND-RVSNEKIRKSFFAGYQALAQIWNHPGILQLTKD 895
+ LS Q LYK F+D + R + K+ G L ++ NHP +L L+ D
Sbjct: 502 VFCNLSQFQLDLYKHFIDSPEIKSLLRGKGSQPLKAI--GI--LKKLCNHPDLLNLSTD 556
Score = 202 (76.2 bits), Expect = 1.4e-44, Sum P(3) = 1.4e-44
Identities = 54/138 (39%), Positives = 75/138 (54%)
Query: 958 YSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWY 1016
YSGKM++L +L + DK ++ S TLDL E KL R G L
Sbjct: 584 YSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFE----KLCRSRAYGCL-------- 631
Query: 1017 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1076
RLDG +RQKLV++FN+P + L+S++AG G+NL ANR+++ D WNP D
Sbjct: 632 RLDGTMNVKKRQKLVDKFNDPDGEEF-VFLLSSKAGGCGLNLIGANRLVLFDPDWNPAAD 690
Query: 1077 LQAIYRAWRCMDKQSQFL 1094
QA+ R WR K+ F+
Sbjct: 691 QQALARVWRDGQKKDCFV 708
Score = 47 (21.6 bits), Expect = 1.4e-44, Sum P(3) = 1.4e-44
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 126 DGNSDDPFVADAIANEKELALSEEQRKKFR--KVKEEDDA 163
DG+ DD V NE+ LAL+ +F K K++D A
Sbjct: 91 DGSIDDNSVKP-YTNEERLALATRDVNRFPVFKAKDKDVA 129
Score = 41 (19.5 bits), Expect = 2.8e-11, Sum P(3) = 2.8e-11
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 395 KTLFCTTCVKRNISEACLSDEVQASCWQCC--CCSPSLLKRLTSELGRAMG 443
KTL C + + + + S E + Q C C SL+ +ELG+ +G
Sbjct: 276 KTLQCISLMWTLLKQ---SPEAGKTTIQKCIIACPSSLVGNWANELGKWLG 323
>UNIPROTKB|B4JCS7 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7222 "Drosophila grimshawi" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043150 EMBL:CH916368
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001988299.1
STRING:B4JCS7 EnsemblMetazoa:FBtr0146056 GeneID:6562163
KEGG:dgr:Dgri_GH10642 FlyBase:FBgn0118123 InParanoid:B4JCS7
OMA:TYQALMG Uniprot:B4JCS7
Length = 786
Score = 374 (136.7 bits), Expect = 1.5e-44, Sum P(2) = 1.5e-44
Identities = 106/351 (30%), Positives = 180/351 (51%)
Query: 562 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMR- 620
+S L+ HQ G+RFM+E + + K G GCI+A MGLGKT Q + +T +R
Sbjct: 145 LSNVLRPHQREGVRFMYECV-----EGKRGSFN-GCIMADEMGLGKTLQCVTLTWTLLRQ 198
Query: 621 SVNLG--LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVF--MLEDVSRD-RRAELLAK 675
S + + A++V+P +++ NW++EF KW + L + E+ +R + +
Sbjct: 199 SADCKPTISKAIVVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEETTRTLEQFAMNTS 258
Query: 676 WRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTT 735
R V LI Y FR + H+ +C + G +++CDE H +KN+ T
Sbjct: 259 TRCGTPVLLISYETFRLYA---HI--------LCKT-EVG--MVICDEGHRLKNSDNLTY 304
Query: 736 QALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNS 795
QAL +K +RR+ L+G+P+QN+L EY+ +V+FV LG++ +F+ F+N I GQ+ +S
Sbjct: 305 QALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTATDFKRNFENAILRGQNADS 364
Query: 796 TSEDVKIMNQRSHILYEQLKGFVQ----RMDMNVVKKDLPPKTVFVITVKLSPLQRRLYK 851
T + +R+ + ++L G V R ++ K LP K V+ KL+ +Q ++Y
Sbjct: 365 TDTE----RERALLKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVVCAKLTAVQLQIYT 420
Query: 852 RFLDLHGFTNDRVS-NEKIRKSFFAGYQALAQIWNHPGILQ---LTKDKGY 898
FL NEK + + L ++ NHP ++ ++KG+
Sbjct: 421 NFLKSDQVCRSLADCNEKTSLTALSDITTLKKLCNHPDLIYEKLAAREKGF 471
Score = 180 (68.4 bits), Expect = 1.5e-44, Sum P(2) = 1.5e-44
Identities = 51/141 (36%), Positives = 75/141 (53%)
Query: 957 DYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
+ SGK +LL +L +N DK ++ S TLDL E +L R K+ +
Sbjct: 490 ELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLFE----QLAR--------KRKYSY 537
Query: 1016 YRLDGRTESSERQKLVERFNEPLNKRVKCTL--ISTRAGSLGINLHSANRVIIVDGSWNP 1073
RLDG +R K+V+RFN+P + C L +S++AG G+NL ANR+ + D WNP
Sbjct: 538 VRLDGTMTIKKRSKVVDRFNDPSSD---CFLFMLSSKAGGCGLNLIGANRLFMFDPDWNP 594
Query: 1074 TYDLQAIYRAWRCMDKQSQFL 1094
D QA+ R WR K+ ++
Sbjct: 595 ANDEQAMARVWRDGQKKPCYI 615
>UNIPROTKB|Q29KH2 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:46245 "Drosophila pseudoobscura pseudoobscura"
[GO:0000711 "meiotic DNA repair synthesis" evidence=ISS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISS] [GO:0006338
"chromatin remodeling" evidence=ISS] [GO:0010212 "response to
ionizing radiation" evidence=ISS] [GO:0043150 "DNA synthesis
involved in double-strand break repair via homologous
recombination" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH379061 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001356143.2
GeneID:4816519 KEGG:dpo:Dpse_GA17651 FlyBase:FBgn0077662
InParanoid:Q29KH2 Uniprot:Q29KH2
Length = 782
Score = 374 (136.7 bits), Expect = 3.9e-44, Sum P(2) = 3.9e-44
Identities = 101/333 (30%), Positives = 173/333 (51%)
Query: 562 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 621
+S L+ HQ G+RFM+E + + K G+ GCI+A MGLGKT Q +A ++T ++
Sbjct: 148 LSNILRPHQREGVRFMYECV-----EGKRGNFN-GCIMADEMGLGKTLQCVALVWTLLKQ 201
Query: 622 ---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRA 678
+ +IV+P +++ NW++EF KW + L +E S++ L ++
Sbjct: 202 SAECKPTINKCIIVSPSSLVKNWEKEFTKWLHGRMHCLA---MEGGSKENTVRALEQFSM 258
Query: 679 KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQAL 738
L G T +S+ R A +C + G +++CDE H +KN+ T QAL
Sbjct: 259 NASTRL-G-TPVLLISYETF---RIYAEILCK-YEVG--MVICDEGHRLKNSDNLTYQAL 310
Query: 739 KQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSE 798
+K +RR+ L+G+P+QN+L EY+ +V+FV LG++ +F+ F+N I GQ+ +ST +
Sbjct: 311 MGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDK 370
Query: 799 DVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHG 858
+ +++ L + + + R ++ K LP K VI KL+P+Q +LY FL
Sbjct: 371 ERDRALEKTQELIKLVDQCIIRRTNQILTKYLPVKFEMVICAKLTPIQLQLYTNFLKSDQ 430
Query: 859 FTNDRVS-NEKIRKSFFAGYQALAQIWNHPGIL 890
EK + A L ++ +HP ++
Sbjct: 431 VRRSLADCKEKASLTALADITTLKKLCSHPNLI 463
Score = 176 (67.0 bits), Expect = 3.9e-44, Sum P(2) = 3.9e-44
Identities = 52/141 (36%), Positives = 73/141 (51%)
Query: 957 DYSGKMVLLLDILTMCSNMG-DKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
+ SGK LL +L G DK ++ S TLDL E +L R K G +
Sbjct: 494 ELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTLDLFE----QLARKRKYG--------F 541
Query: 1016 YRLDGRTESSERQKLVERFNEPLNKRVKCTL--ISTRAGSLGINLHSANRVIIVDGSWNP 1073
RLDG +R K+V+RFN+P + C L +S++AG G+NL ANR+ + D WNP
Sbjct: 542 VRLDGTMSIKKRSKVVDRFNDPESD---CFLFMLSSKAGGCGLNLIGANRLFMFDPDWNP 598
Query: 1074 TYDLQAIYRAWRCMDKQSQFL 1094
D QA+ R WR K+ ++
Sbjct: 599 ANDEQAMARVWRDGQKKPCYI 619
>UNIPROTKB|B4GS98 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7234 "Drosophila persimilis" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043150 EMBL:CH479189 GO:GO:0000711 KO:K10875
OrthoDB:EOG4PC872 RefSeq:XP_002021802.1 EnsemblMetazoa:FBtr0192316
GeneID:6596280 KEGG:dpe:Dper_GL26701 FlyBase:FBgn0164282
Uniprot:B4GS98
Length = 782
Score = 374 (136.7 bits), Expect = 5.0e-44, Sum P(2) = 5.0e-44
Identities = 101/333 (30%), Positives = 173/333 (51%)
Query: 562 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 621
+S L+ HQ G+RFM+E + + K G+ GCI+A MGLGKT Q +A ++T ++
Sbjct: 148 LSNILRPHQREGVRFMYECV-----EGKRGNFN-GCIMADEMGLGKTLQCVALVWTLLKQ 201
Query: 622 ---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRA 678
+ +IV+P +++ NW++EF KW + L +E S++ L ++
Sbjct: 202 SAECKPTINKCIIVSPSSLVKNWEKEFTKWLHGRMHCLA---MEGGSKENTVRALEQFSM 258
Query: 679 KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQAL 738
L G T +S+ R A +C + G +++CDE H +KN+ T QAL
Sbjct: 259 NASTRL-G-TPVLLISYETF---RIYAEILCK-YEVG--MVICDEGHRLKNSDNLTYQAL 310
Query: 739 KQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSE 798
+K +RR+ L+G+P+QN+L EY+ +V+FV LG++ +F+ F+N I GQ+ +ST +
Sbjct: 311 MGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDK 370
Query: 799 DVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHG 858
+ +++ L + + + R ++ K LP K VI KL+P+Q +LY FL
Sbjct: 371 ERDRALEKTQELIKLVDQCIIRRTNQILTKYLPVKFEMVICAKLTPIQLQLYTNFLKSDQ 430
Query: 859 FTNDRVS-NEKIRKSFFAGYQALAQIWNHPGIL 890
EK + A L ++ +HP ++
Sbjct: 431 VRRSLADCKEKASLTALADITTLKKLCSHPNLI 463
Score = 175 (66.7 bits), Expect = 5.0e-44, Sum P(2) = 5.0e-44
Identities = 52/141 (36%), Positives = 72/141 (51%)
Query: 957 DYSGKMVLLLDILTMCSNMG-DKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
+ SGK LL +L G DK ++ S TLDL E L R K G +
Sbjct: 494 ELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTLDLFEL----LARKRKYG--------F 541
Query: 1016 YRLDGRTESSERQKLVERFNEPLNKRVKCTL--ISTRAGSLGINLHSANRVIIVDGSWNP 1073
RLDG +R K+V+RFN+P + C L +S++AG G+NL ANR+ + D WNP
Sbjct: 542 VRLDGTMSIKKRSKVVDRFNDPESD---CFLFMLSSKAGGCGLNLIGANRLFMFDPDWNP 598
Query: 1074 TYDLQAIYRAWRCMDKQSQFL 1094
D QA+ R WR K+ ++
Sbjct: 599 ANDEQAMARVWRDGQKKPCYI 619
>UNIPROTKB|Q9DG67 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:25788
KO:K10877 EMBL:AF178529 IPI:IPI00590839 RefSeq:NP_990041.1
UniGene:Gga.2372 ProteinModelPortal:Q9DG67 STRING:Q9DG67
PRIDE:Q9DG67 GeneID:395449 KEGG:gga:395449 HOGENOM:HOG000204521
HOVERGEN:HBG058654 InParanoid:Q9DG67 OrthoDB:EOG4SBDX5
NextBio:20815533 Uniprot:Q9DG67
Length = 918
Score = 273 (101.2 bits), Expect = 1.7e-43, Sum P(4) = 1.7e-43
Identities = 64/185 (34%), Positives = 103/185 (55%)
Query: 717 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 776
++L+CDE H +KN+ TT AL + C+RRI LTG+P+QN+L E+Y +++FV G LGS
Sbjct: 433 NLLICDEGHRLKNSSIKTTTALTNLSCERRIILTGTPIQNDLQEFYALIEFVNPGVLGSL 492
Query: 777 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKKDLPPKTV 835
+R ++ PI + ++T E+ + +R+ L +L G F+ R V+ K LPPK
Sbjct: 493 STYRKIYEEPIVRSREPSATKEEKDLGEKRAAEL-TRLTGLFILRRTQEVINKFLPPKKE 551
Query: 836 FVITVKLSPLQRRLYKRFLD---LHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL-Q 891
+I + + LQ LY++ L + R+ N G AL ++ NHP +L +
Sbjct: 552 NIIFCQPTALQLELYRKLLSSRVISSCLQGRLENSP--HLICIG--ALKKLCNHPCLLFK 607
Query: 892 LTKDK 896
K+K
Sbjct: 608 ALKEK 612
Score = 167 (63.8 bits), Expect = 1.7e-43, Sum P(4) = 1.7e-43
Identities = 47/114 (41%), Positives = 66/114 (57%)
Query: 562 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 621
I+ L+ HQ GI F++E + +R SG G ILA MGLGKT Q I+ ++T +R
Sbjct: 299 IANNLRPHQREGIVFLYE-CVMGMRV--SGR--FGAILADEMGLGKTLQCISLVWTLLRQ 353
Query: 622 VNLG----LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAE 671
G L+ ALIVTP +++ NWK+EF KW SE ++VF V +D + E
Sbjct: 354 GVYGCKPVLKRALIVTPGSLVKNWKKEFQKWLGSER--IKVFT---VDQDHKVE 402
Score = 167 (63.8 bits), Expect = 1.7e-43, Sum P(4) = 1.7e-43
Identities = 44/134 (32%), Positives = 70/134 (52%)
Query: 952 TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKK 1011
T+ E+D SGK+ +L+ +L + V L+ Y L + K +
Sbjct: 642 TFSEID-SGKLQVLVKLLAAIRELSSSERVV--------LVSNYTQTLNVLLETCKCY-- 690
Query: 1012 GKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW 1071
G + RLDG T S+RQ++V+ FN + L+S++AG +G+NL A+ +I+ D W
Sbjct: 691 GYSYTRLDGNTPVSQRQQIVDSFNSKFSPAF-IFLLSSKAGGVGLNLVGASHLILYDIDW 749
Query: 1072 NPTYDLQAIYRAWR 1085
NP D+QA+ R WR
Sbjct: 750 NPATDIQAMARVWR 763
Score = 38 (18.4 bits), Expect = 1.7e-43, Sum P(4) = 1.7e-43
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 32 ENGGKEVSDINWNSVNK 48
E+ GK S WNS +K
Sbjct: 74 ESSGKVKSTKAWNSTSK 90
>SGD|S000003131 [details] [associations]
symbol:RAD54 "DNA-dependent ATPase that stimulates strand
exchange" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IMP;IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0032392 "DNA geometric change" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0032079 "positive regulation
of endodeoxyribonuclease activity" evidence=IDA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IMP] [GO:0045002 "double-strand break repair via
single-strand annealing" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=IDA] [GO:0030491 "heteroduplex formation"
evidence=IDA] [GO:0045003 "double-strand break repair via
synthesis-dependent strand annealing" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 SGD:S000003131 GO:GO:0005524
GO:GO:0005634 EMBL:BK006941 GO:GO:0006338 GO:GO:0004386 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0045003 GO:GO:0000722
GO:GO:0015616 GO:GO:0032392 GO:GO:0032079 HOGENOM:HOG000204521
GO:GO:0030491 KO:K10875 OMA:LSEYFAL OrthoDB:EOG4T1MVP EMBL:M63232
EMBL:Z72685 PIR:JH0440 RefSeq:NP_011352.1 ProteinModelPortal:P32863
SMR:P32863 DIP:DIP-509N IntAct:P32863 MINT:MINT-605745
STRING:P32863 EnsemblFungi:YGL163C GeneID:852713 KEGG:sce:YGL163C
CYGD:YGL163c NextBio:972079 Genevestigator:P32863
GermOnline:YGL163C Uniprot:P32863
Length = 898
Score = 347 (127.2 bits), Expect = 2.8e-43, Sum P(3) = 2.8e-43
Identities = 93/291 (31%), Positives = 149/291 (51%)
Query: 579 ENIIQSIRKVKSGDKGL-GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRT---ALIVTP 634
E + +K + ++G GCI+A MGLGKT Q IA ++T +R G R +IV P
Sbjct: 312 EKALTESQKTEQNNRGAYGCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCP 371
Query: 635 VNVLHNWKQEFMKWR-PSELKPLRVFMLEDV---SRDRRAELLAKW-RAKGG-----VFL 684
++++NW E +KW P+ L PL V + ++ + W +A+G V +
Sbjct: 372 SSLVNNWANELIKWLGPNTLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLI 431
Query: 685 IGY-TAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKC 743
I Y T RN+ +K+ N+ +++ DE H +KN + T AL + C
Sbjct: 432 ISYETLRRNVD---QLKNCNVG------------LMLADEGHRLKNGDSLTFTALDSISC 476
Query: 744 QRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIM 803
RR+ L+G+P+QN+L EY+ ++ F G LGS EFR F+NPI G+ ++T +++
Sbjct: 477 PRRVILSGTPIQNDLSEYFALLSFSNPGLLGSRAEFRKNFENPILRGRDADATDKEITKG 536
Query: 804 NQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFL 854
+ L + F+ R +++ K LP K VI V L PLQ LY + +
Sbjct: 537 EAQLQKLSTIVSKFIIRRTNDILAKYLPCKYEHVIFVNLKPLQNELYNKLI 587
Score = 193 (73.0 bits), Expect = 2.8e-43, Sum P(3) = 2.8e-43
Identities = 54/138 (39%), Positives = 74/138 (53%)
Query: 958 YSGKMVLLLDIL-TMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWY 1016
YS K +L L + + DK ++ S TLDLIE K+ R K
Sbjct: 653 YSAKFSILERFLHKIKTESDDKIVLISNYTQTLDLIE----KMCR--------YKHYSAV 700
Query: 1017 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1076
RLDG ++RQKLV+RFN+P + L+S++AG GINL ANR+I++D WNP D
Sbjct: 701 RLDGTMSINKRQKLVDRFNDPEGQEF-IFLLSSKAGGCGINLIGANRLILMDPDWNPAAD 759
Query: 1077 LQAIYRAWRCMDKQSQFL 1094
QA+ R WR K+ F+
Sbjct: 760 QQALARVWRDGQKKDCFI 777
Score = 53 (23.7 bits), Expect = 2.8e-43, Sum P(3) = 2.8e-43
Identities = 24/109 (22%), Positives = 49/109 (44%)
Query: 481 LDDAELGEETKRKIAI--EKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGD 538
+D+ E EE+K+ I EK+ + K+ Q + ++ + + + E+LGD
Sbjct: 188 MDNKE--EESKKMIKSTQEKDNINKEKNSQEERPTQRIGRHPALMTNGVRNKPLRELLGD 245
Query: 539 AITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRK 587
+ ++ V I ++ L+ HQV G+RF++ + + K
Sbjct: 246 SENS--AENKKKFASVPVVIDPKLAKILRPHQVEGVRFLYRCVTGLVMK 292
Score = 44 (20.5 bits), Expect = 2.4e-42, Sum P(3) = 2.4e-42
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 131 DPFV-ADAIANEKELALSEEQRKKFRK-VKEEDDANMD 166
DP V + I ++ + EE+ KK K +E+D+ N +
Sbjct: 174 DPSVDGEMIVHDTSMDNKEEESKKMIKSTQEKDNINKE 211
Score = 40 (19.1 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 128 NSDDPFVA--DAIANEKELALSEEQRKKFRKV 157
N ++P + DA A +KE+ E Q +K +
Sbjct: 515 NFENPILRGRDADATDKEITKGEAQLQKLSTI 546
>CGD|CAL0000882 [details] [associations]
symbol:orf19.607 species:5476 "Candida albicans" [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000882 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000108 HOGENOM:HOG000170952 KO:K10841
RefSeq:XP_714234.1 ProteinModelPortal:Q59XB8 STRING:Q59XB8
GeneID:3644142 KEGG:cal:CaO19.607 Uniprot:Q59XB8
Length = 1055
Score = 329 (120.9 bits), Expect = 3.8e-43, Sum P(2) = 3.8e-43
Identities = 111/371 (29%), Positives = 172/371 (46%)
Query: 546 NVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGL 605
N+ K E ++P I L +Q ++++WE Q K+G I+ MGL
Sbjct: 251 NIADAKLNEKFKLPGDIYPSLFDYQKTCVQWLWELYTQ-----KTGG-----IIGDEMGL 300
Query: 606 GKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE----LKPLRVFML 661
GKT Q+I+FL + L + L+V P VL+ W EF +W P L + M
Sbjct: 301 GKTIQIISFL-AGLHYSGLLDKPVLVVVPATVLNQWVNEFHRWWPPLRCIILHSIGSGMN 359
Query: 662 EDVSRDRRAELL------AKWRAKGGV-FLIGYTAF--RNLSFGKHVKDRNMAREIC--H 710
VS + E L A + G+ I R + G + + I H
Sbjct: 360 GSVSESKLEEYLESTDPDATQSSLHGIKSQINAQEIVDRVMEKGHVLVTTYVGLRIYSKH 419
Query: 711 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 770
L +V DE H I+N +D + K++K RI L+G+P+QNNL+E + + DFV
Sbjct: 420 ILPREWGYVVLDEGHKIRNPDSDISLTCKKIKTVNRIILSGTPIQNNLIELWSLFDFVFP 479
Query: 771 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDL 830
G LG+ F+ F PI G + NS + VK + + +L + + ++ R + V +DL
Sbjct: 480 GRLGTLPVFQQEFSIPINIGGYANSNNLQVKTAYKCAVVLRDLISPYMLRRLKSDVAQDL 539
Query: 831 PPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 890
P K V+ VKL+ +Q+ LY+ FL + D S K +++ G L +I NHP ++
Sbjct: 540 PKKNEMVLFVKLTKIQQELYESFLQ----SEDLESILKGKRNVLMGVDILRKICNHPDLV 595
Query: 891 Q---LTKDKGY 898
L K K Y
Sbjct: 596 YRDTLMKRKNY 606
Score = 219 (82.2 bits), Expect = 3.8e-43, Sum P(2) = 3.8e-43
Identities = 54/145 (37%), Positives = 84/145 (57%)
Query: 947 LLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQG 1006
L+ Y + SGKM +L ++L + + K+L+F Q+ LD++E +++ L
Sbjct: 600 LMKRKNYGDPAKSGKMQVLKNLLRLWQSENHKTLLFCQTRQMLDILEKFVANL------- 652
Query: 1007 KLWKKGK-DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVI 1065
L G ++ R+DG T S+RQ LV+ FN+ + V L++T+ G LG+NL A+RVI
Sbjct: 653 SLINGGDFNYLRMDGSTPISKRQMLVDAFNQDPDMHV--FLLTTKVGGLGVNLTGADRVI 710
Query: 1066 IVDGSWNPTYDLQAIYRAWRCMDKQ 1090
I D WNP+ D+QA RAWR K+
Sbjct: 711 IYDPDWNPSTDIQARERAWRLGQKR 735
>POMBASE|SPCP25A2.02c [details] [associations]
symbol:rhp26 "SNF2 family helicase Rhp26" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCP25A2.02c GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003677 GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006283
HOGENOM:HOG000170952 KO:K10841 OrthoDB:EOG44TSGZ EMBL:AB022912
PIR:T50449 RefSeq:NP_588091.1 ProteinModelPortal:Q9UR24
STRING:Q9UR24 EnsemblFungi:SPCP25A2.02c.1 GeneID:2539473
KEGG:spo:SPCP25A2.02c NextBio:20800635 Uniprot:Q9UR24
Length = 973
Score = 247 (92.0 bits), Expect = 4.2e-43, Sum P(3) = 4.2e-43
Identities = 60/172 (34%), Positives = 102/172 (59%)
Query: 720 VCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 779
V DE H I+N ++ + + KQ++ RI L+G+P+QNNL E + + DFV G LG+ F
Sbjct: 439 VLDEGHKIRNPDSEISISCKQIRTVNRIILSGTPIQNNLTELWNLFDFVFPGRLGTLPVF 498
Query: 780 RNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV-QRMDMNVVKKDLPPKTVFVI 838
+N+F PI G + N+++ V+ + + +L + + ++ +RM ++V DLP K+ V+
Sbjct: 499 QNQFALPINIGGYANASNVQVQTAYKCACMLRDLISPYLLRRMKLDVAA-DLPKKSEQVL 557
Query: 839 TVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 890
KL+PLQR+ Y+ FL G ++ N K R+ + G L +I NHP ++
Sbjct: 558 FCKLTPLQRKAYQDFLQ--GSDMQKILNGK-RQMLY-GIDILRKICNHPDLV 605
Score = 225 (84.3 bits), Expect = 4.2e-43, Sum P(3) = 4.2e-43
Identities = 55/146 (37%), Positives = 83/146 (56%)
Query: 947 LLH--EHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGK 1004
LLH ++ Y + + SGK+ ++ +LT+ G ++L+FSQ+ LD++E L LP
Sbjct: 610 LLHKEDYNYGDPEKSGKLKVIRALLTLWKKQGHRTLLFSQTRQMLDILEIGLKDLP---- 665
Query: 1005 QGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRV 1064
+ R+DG T + RQ LV+ FN+ N+ L++TR G LG+NL A+RV
Sbjct: 666 -------DVHYCRMDGSTSIALRQDLVDNFNK--NEYFDVFLLTTRVGGLGVNLTGADRV 716
Query: 1065 IIVDGSWNPTYDLQAIYRAWRCMDKQ 1090
I+ D WNP+ D QA RAWR K+
Sbjct: 717 ILFDPDWNPSTDAQARERAWRLGQKK 742
Score = 127 (49.8 bits), Expect = 4.2e-43, Sum P(3) = 4.2e-43
Identities = 38/118 (32%), Positives = 53/118 (44%)
Query: 553 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVI 612
E IP I L +QV ++++WE Q G I+ MGLGKT Q++
Sbjct: 264 EGGFTIPGDIRPHLFRYQVTCVQWLWELYCQEA----------GGIIGDEMGLGKTIQIV 313
Query: 613 AFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRA 670
+FL + S + ALIV P ++ W EF W PLRV +L +RA
Sbjct: 314 SFLSSLHHSGKFQ-KPALIVCPATLMKQWVNEFHTW----WAPLRVVVLHATGSGQRA 366
>DICTYBASE|DDB_G0282997 [details] [associations]
symbol:rad54 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282997 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006281
EMBL:AAFI02000049 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K10875 RefSeq:XP_639303.1
ProteinModelPortal:Q54RP8 STRING:Q54RP8 EnsemblProtists:DDB0232369
GeneID:8623874 KEGG:ddi:DDB_G0282997 InParanoid:Q54RP8 OMA:ERPILAG
ProtClustDB:CLSZ2728985 Uniprot:Q54RP8
Length = 931
Score = 367 (134.2 bits), Expect = 1.3e-42, Sum P(3) = 1.3e-42
Identities = 91/269 (33%), Positives = 138/269 (51%)
Query: 589 KSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTA---LIVTPVNVLHNWKQEF 645
+ G KG GCILA MGLGK+ Q I L+T ++ G TA +IV P ++ NW QE
Sbjct: 302 RGGFKGNGCILADDMGLGKSIQAITILWTLLKQGPKGESTAKKAVIVAPCTLVGNWGQEL 361
Query: 646 MKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMA 705
KW + + + + ++ RA+L K V +I Y R
Sbjct: 362 KKWLGDGVNTVAI---GESTKTGRAKLTELEFGKADVLIISYDQLRIY-----------C 407
Query: 706 REICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMV 765
+IC G +++CDE H +KN TT+A+ + RR+ L+G+P+QN+L E+Y MV
Sbjct: 408 EDICKITSIG--LVICDEGHRLKNAEIKTTKAVSMIPTARRVILSGTPIQNDLTEFYAMV 465
Query: 766 DFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 825
+FV G L + F+N + PI ++ +++ E+ +I QRS L F+ R V
Sbjct: 466 NFVNPGVLKNVATFKNVYDAPIVASRNPDASDEEKEIGRQRSLELSRLTSQFILRRTAFV 525
Query: 826 VKKDLPPKTVFVITVKLSPLQRRLYKRFL 854
+ LPPK +VI KL+PLQ +YK +
Sbjct: 526 NTQYLPPKVEYVIFCKLTPLQLSIYKHLI 554
Score = 176 (67.0 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 64/208 (30%), Positives = 92/208 (44%)
Query: 488 EETKRKIAIEKERQERLKSLQVQFSSKSKLMN-SVTLDGDLSAGASIEVLGDAITGYIVN 546
EE K K A R K QV K + S L L+ + + ITG
Sbjct: 212 EEKKEKKAPILAAAHRPKGFQVPVKGLEKAVRLSKPLHNPLAPNSLVLFTPVDITG---- 267
Query: 547 VVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLG 606
E V P +S KL+ HQ G++FM++ ++ + G KG GCILA MGLG
Sbjct: 268 ---ENRIHCVVDPI-LSQKLRPHQREGVQFMFDCLLG----FRGGFKGNGCILADDMGLG 319
Query: 607 KTFQVIAFLYTAMRSVNLGLRTA---LIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLED 663
K+ Q I L+T ++ G TA +IV P ++ NW QE KW + + + +
Sbjct: 320 KSIQAITILWTLLKQGPKGESTAKKAVIVAPCTLVGNWGQELKKWLGDGVNTVAI---GE 376
Query: 664 VSRDRRAELLAKWRAKGGVFLIGYTAFR 691
++ RA+L K V +I Y R
Sbjct: 377 STKTGRAKLTELEFGKADVLIISYDQLR 404
Score = 171 (65.3 bits), Expect = 1.3e-42, Sum P(3) = 1.3e-42
Identities = 40/130 (30%), Positives = 71/130 (54%)
Query: 958 YSGKMVLLLDILTMCSNM--GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
YS K++ + +L N GDK+++ S TL+++ + K +G +
Sbjct: 615 YSSKLLFVDRLLANIRNSKSGDKTVIISNYTQTLEVLAT-MCKT-----------RGYAY 662
Query: 1016 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1075
++LDG T +++RQ+LV +N+P L+S++AG +G+NL N +++ D WNP
Sbjct: 663 FQLDGSTANAKRQQLVNLYNDPARPEF-VFLLSSKAGGVGLNLIGGNHLVLFDADWNPAN 721
Query: 1076 DLQAIYRAWR 1085
D Q++ R WR
Sbjct: 722 DAQSMARVWR 731
Score = 48 (22.0 bits), Expect = 1.3e-42, Sum P(3) = 1.3e-42
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 121 EIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDD 162
E++D D SDD V+ +N ++ E ++ K +++ + D
Sbjct: 59 ELKDEDNKSDDGSVSSGSSNGDKIR-EETKKGKNQRMNPDSD 99
>ZFIN|ZDB-GENE-060810-50 [details] [associations]
symbol:rad54b "RAD54 homolog B (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060810-50 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:BX511010
IPI:IPI00513586 Ensembl:ENSDART00000138496 Bgee:E9QHY4
Uniprot:E9QHY4
Length = 917
Score = 335 (123.0 bits), Expect = 1.9e-42, Sum P(2) = 1.9e-42
Identities = 104/343 (30%), Positives = 163/343 (47%)
Query: 556 VRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL 615
V I ++ L+ HQ G+ F++E + +R +G G ILA MGLGKT Q + L
Sbjct: 298 VVIDPHLTNHLRPHQKEGVVFLYE-CLMGMRL--AGR--CGAILADEMGLGKTLQCVCVL 352
Query: 616 YTAMRSVNLG----LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAE 671
+T +R G ++ AL+V P +++ NW EF KW E + V+ V +D R E
Sbjct: 353 WTLLRQGPYGGRPVMKRALVVCPGSLVKNWAAEFNKWLGRER--ISVYT---VDQDHRVE 407
Query: 672 LLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTR 731
V +I Y + V DR +E L G +L+CDE H +KN+
Sbjct: 408 DFVS-SPLCSVLVISYEMLL-----RSV-DR--LKE----LDFG--VLICDEGHRLKNSN 452
Query: 732 ADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQ 791
T AL + C RR+ LTG+P+QN+L E+Y +++FV G LG+S +R ++ PI +
Sbjct: 453 IKTAGALTALSCTRRLILTGTPVQNDLQEFYSIIEFVNPGILGTSAAYRKIYEEPILRSR 512
Query: 792 HTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYK 851
+ T E+ I +R+ L+ F R ++ + L + + + K + LQ RLY+
Sbjct: 513 QPSCTEEERCIGEERAAELFRLTGVFTLRRTQEIINQYLSERIEWTVFCKPTELQIRLYR 572
Query: 852 RFLDLHGFTNDRVSNEKIRKS-FFAGYQALAQIWNHPGILQLT 893
L + S AL ++ NHP +L T
Sbjct: 573 VLLSTRPIRACLSGSHTYTHSPHLVCINALKKLCNHPALLYNT 615
Score = 204 (76.9 bits), Expect = 1.9e-42, Sum P(2) = 1.9e-42
Identities = 50/145 (34%), Positives = 81/145 (55%)
Query: 959 SGKMVLLLDILTMCS--NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWY 1016
SGK+++L D+L+ N D+ ++ S TLDL++ ++ G W
Sbjct: 646 SGKLLVLTDLLSAIQHVNRTDRVVLVSNHTQTLDLLQDVCDQI------------GYKWC 693
Query: 1017 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1076
RLDG+T +RQK+V+ FN P + L+S++AG +G+NL A+ +++ D WNP D
Sbjct: 694 RLDGQTPVGQRQKIVDSFNSPHSSSF-LLLLSSKAGGVGLNLIGASHLVLYDIDWNPAND 752
Query: 1077 LQAIYRAWRCMDKQS----QFLLTG 1097
+QA+ R WR K++ +FL TG
Sbjct: 753 IQAMARVWRDGQKKTVHIYRFLTTG 777
>SGD|S000003796 [details] [associations]
symbol:RAD26 "Protein involved in transcription-coupled
nucleotide excision repair" species:4932 "Saccharomyces cerevisiae"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair"
evidence=IGI;IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000003796 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 EMBL:BK006943 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006283 GO:GO:0008094
GeneTree:ENSGT00590000083118 HOGENOM:HOG000170952 KO:K10841
EMBL:X81635 EMBL:L26910 EMBL:Z49535 PIR:JC2227 RefSeq:NP_012569.1
ProteinModelPortal:P40352 SMR:P40352 DIP:DIP-3008N IntAct:P40352
MINT:MINT-439055 STRING:P40352 PaxDb:P40352 PeptideAtlas:P40352
EnsemblFungi:YJR035W GeneID:853492 KEGG:sce:YJR035W CYGD:YJR035w
OMA:DENRIME OrthoDB:EOG44TSGZ NextBio:974125 Genevestigator:P40352
GermOnline:YJR035W Uniprot:P40352
Length = 1085
Score = 235 (87.8 bits), Expect = 1.7e-41, Sum P(3) = 1.7e-41
Identities = 65/187 (34%), Positives = 97/187 (51%)
Query: 720 VCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 779
V DE H I+N ++ + K++K RI L+G+P+QNNL E + + DF+ G LG+ F
Sbjct: 467 VLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNNLTELWSLFDFIFPGKLGTLPVF 526
Query: 780 RNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVIT 839
+ +F PI G + N+T+ V+ + + L + + ++ R V KDLP K V+
Sbjct: 527 QQQFVIPINIGGYANATNIQVQTGYKCAVALRDLISPYLLRRVKADVAKDLPQKKEMVLF 586
Query: 840 VKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQL-TK---- 894
KL+ QR Y FL H +++ N K R F G L +I NHP +L TK
Sbjct: 587 CKLTKYQRSKYLEFL--HSSDLNQIQNGK-RNVLF-GIDILRKICNHPDLLDRDTKRHNP 642
Query: 895 DKGYPSR 901
D G P R
Sbjct: 643 DYGDPKR 649
Score = 232 (86.7 bits), Expect = 1.7e-41, Sum P(3) = 1.7e-41
Identities = 56/142 (39%), Positives = 80/142 (56%)
Query: 949 HEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKL 1008
H Y + SGKM ++ +L + G K+L+F+QS LD++E ++S K L
Sbjct: 640 HNPDYGDPKRSGKMQVVKQLLLLWHKQGYKALLFTQSRQMLDILEEFIST-----KDPDL 694
Query: 1009 WKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVD 1068
++ R+DG T RQ LV+RFN N+ L++TR G LG+NL ANR+II D
Sbjct: 695 --SHLNYLRMDGTTNIKGRQSLVDRFN---NESFDVFLLTTRVGGLGVNLTGANRIIIFD 749
Query: 1069 GSWNPTYDLQAIYRAWRCMDKQ 1090
WNP+ D+QA RAWR K+
Sbjct: 750 PDWNPSTDMQARERAWRIGQKR 771
Score = 119 (46.9 bits), Expect = 1.7e-41, Sum P(3) = 1.7e-41
Identities = 38/119 (31%), Positives = 55/119 (46%)
Query: 546 NVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGL 605
N+ K +IP I + L +Q +++++E + Q + G I+ MGL
Sbjct: 277 NIPDAKLNSQFKIPGEIYSLLFNYQKTCVQWLYE-LYQ---------QNCGGIIGDEMGL 326
Query: 606 GKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDV 664
GKT QVIAF+ A+ L LIV P V+ W EF W P PLR +L +
Sbjct: 327 GKTIQVIAFI-AALHHSGLLTGPVLIVCPATVMKQWCNEFQHWWP----PLRTVILHSM 380
>FB|FBgn0032157 [details] [associations]
symbol:Etl1 "Etl1 homologue" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0003677
GO:GO:0006281 GO:GO:0016568 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 OMA:KEERYMA EMBL:AY060597
RefSeq:NP_001033889.1 RefSeq:NP_001033890.1 RefSeq:NP_609320.2
UniGene:Dm.3953 ProteinModelPortal:Q9VL72 SMR:Q9VL72 IntAct:Q9VL72
STRING:Q9VL72 PRIDE:Q9VL72 EnsemblMetazoa:FBtr0079901 GeneID:34311
KEGG:dme:Dmel_CG5899 UCSC:CG5899-RA FlyBase:FBgn0032157
InParanoid:Q9VL72 PhylomeDB:Q9VL72 GenomeRNAi:34311 NextBio:787873
Bgee:Q9VL72 Uniprot:Q9VL72
Length = 844
Score = 314 (115.6 bits), Expect = 3.3e-41, Sum P(4) = 3.3e-41
Identities = 123/408 (30%), Positives = 183/408 (44%)
Query: 598 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLR 657
ILA MGLGKT QVIAFL ++ L LIV P + L NW+ E +W P EL
Sbjct: 311 ILADEMGLGKTIQVIAFL-AYLKENGLSQAAHLIVVPSSTLDNWEAEISRWCP-EL---- 364
Query: 658 VFMLEDVSRDRRAELLAKWRAKGGV--FLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 715
V S+D R + ++ AK G F + T + + G ++R M R +C
Sbjct: 365 VVEKYHGSQDERRRMRGRF-AKDGFTGFDVLLTTYHIV--GSTPEERKMFR-VCKL---- 416
Query: 716 PDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGS 775
D ++ DEAHM+KN L + + RI LTG+PLQNNL+E ++ FV F
Sbjct: 417 -DYVIFDEAHMLKNMTTQRYANLITINARMRILLTGTPLQNNLLELISLLCFVMPKFFAK 475
Query: 776 SHE-FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT 834
S E ++ F ++ + S+ + QR+ + +K FV R V K+LP K
Sbjct: 476 SIEDIKSLFAKKGKSDGDQDEVSQFQETQIQRAKRI---MKPFVLRRLKKDVLKNLPKKL 532
Query: 835 VFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQ-LT 893
V V +S Q+ Y +D + V + R A + +I NHP +++
Sbjct: 533 SLVEKVPMSSQQKIYYHELVDYYSNNKGEVCSSSERAGI-AIMMEMRRIANHPLLMRHYF 591
Query: 894 KD---KGYPSRXXXXXXXXXXNMDYNVVIGEKPRNMNDF--LQGKNDDGFFQKDWWNDLL 948
D +G+ R N Y I E+ M+DF Q N F+ ++L+
Sbjct: 592 TDANLRGFSKRLANASSFKKTNEQY---IFEELAVMSDFQVYQMMNKHEFYDVKIPDNLI 648
Query: 949 HEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYL 996
+ SGK + L +L G + L+FSQ LD++E YL
Sbjct: 649 CD--------SGKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDIVEEYL 688
Score = 141 (54.7 bits), Expect = 3.3e-41, Sum P(4) = 3.3e-41
Identities = 48/132 (36%), Positives = 69/132 (52%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK + L +L G + L+FSQ LD++E YL ++ K G + RL
Sbjct: 651 SGKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDIVEEYL----------RIRKFG--FCRL 698
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T + RQ L+ FN + + L+ST+AG +GINL +A+ +I D +NP D Q
Sbjct: 699 DGATAVNVRQDLITDFNG--DDSIFVFLLSTKAGGVGINLTAADTCVIHDIDFNPYNDKQ 756
Query: 1079 AIYRAWRCMDKQ 1090
A R R M +Q
Sbjct: 757 AEDRCHR-MGQQ 767
Score = 125 (49.1 bits), Expect = 3.3e-41, Sum P(4) = 3.3e-41
Identities = 59/187 (31%), Positives = 88/187 (47%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQ-FSSKSKL---MNSVTLDGDLSAGASIEVL 536
+++A L E K EK+ L + V+ FS S L + S+ + GDL A E++
Sbjct: 191 MNEASLIELQSVKTLSEKKA---LAIIDVRPFSDWSDLRQKLESIRMSGDLLNYAQ-ELI 246
Query: 537 GD-----AITGYIVNVVR--EK----GEEAVRIPSSISAKLKA--HQVVGIRFMWENIIQ 583
AI N+V EK G V P +S+ L+ +Q++G+ W ++
Sbjct: 247 NKQNTVAAILSKCNNMVSRLEKAISNGAGIVEQPKLLSSGLQLADYQIIGLN--WLTVMH 304
Query: 584 SIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQ 643
++ +G ILA MGLGKT QVIAFL ++ L LIV P + L NW+
Sbjct: 305 --KQEMNG------ILADEMGLGKTIQVIAFL-AYLKENGLSQAAHLIVVPSSTLDNWEA 355
Query: 644 EFMKWRP 650
E +W P
Sbjct: 356 EISRWCP 362
Score = 44 (20.5 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 34/165 (20%), Positives = 66/165 (40%)
Query: 12 KLLEEGASGFLQKKIANDGSENGGKEVSDINWNSV--NKIFSGDVSEKCAAFGSKHWASV 69
K + GA Q K+ + G + ++ +NW +V + +G ++++ G
Sbjct: 268 KAISNGAGIVEQPKLLSSGLQLADYQIIGLNWLTVMHKQEMNGILADEMG-LGKTIQVIA 326
Query: 70 YLASTPQQAAAMGLKFPGVDEVT--DFSSNCPNMWKFRSIITYRLCKVSGSVEEIEDVDG 127
+LA + + V T ++ + + W ++ K GS +E + G
Sbjct: 327 FLAYLKENGLSQAAHLIVVPSSTLDNWEAEI-SRWCPELVVE----KYHGSQDERRRMRG 381
Query: 128 N-SDDPFVA-DAIANEKELALSE-EQRKKFRKVKEE----DDANM 165
+ D F D + + S E+RK FR K + D+A+M
Sbjct: 382 RFAKDGFTGFDVLLTTYHIVGSTPEERKMFRVCKLDYVIFDEAHM 426
Score = 37 (18.1 bits), Expect = 3.3e-41, Sum P(4) = 3.3e-41
Identities = 8/37 (21%), Positives = 20/37 (54%)
Query: 123 EDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKE 159
+DV + D + +D +E ++ +++K F+ + E
Sbjct: 157 DDVKQSKDQVYDSDDSDSEMSTKMTGQRKKVFQFMNE 193
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 325 (119.5 bits), Expect = 6.3e-41, Sum P(3) = 6.3e-41
Identities = 100/307 (32%), Positives = 158/307 (51%)
Query: 596 GCILAHTMGLGKTFQVIAFL----YTAMRS--VNL---GLRTALIVTPVNVLHNWKQEFM 646
G IL MGLGKT Q+IAFL Y+ +R+ N GL +IV P V+H W +EF
Sbjct: 516 GGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTIIVCPTTVMHQWVKEFH 575
Query: 647 KWRPSELKPLRVFMLEDV-SRDRRAELLAKWRAK-GGVFLIGYTAFRNLSFGKHVKDRNM 704
W P P RV +L + S + E L + A G+ + Y+ R + +D ++
Sbjct: 576 TWWP----PFRVAILHETGSFTHKKEKLVRDIAHCHGILITSYSYIRLM------QD-DI 624
Query: 705 AREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCM 764
+R H ++ DE H I+N A T A KQ + RI L+GSP+QNNL E + +
Sbjct: 625 SRHDWH-------YVILDEGHKIRNPNAAITLACKQFRTPHRIILSGSPMQNNLRELWSL 677
Query: 765 VDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV-QRMDM 823
DF+ G LG+ F +F PI G ++N++ VK + + +L + + ++ +RM
Sbjct: 678 FDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS 737
Query: 824 NV-VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQ 882
+V + LP K V+ +L+ Q ++Y+ F+D R+ N +++ F+G AL +
Sbjct: 738 DVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKEVY--RILNGEMQ--IFSGLVALRK 793
Query: 883 IWNHPGI 889
I NHP +
Sbjct: 794 ICNHPDL 800
Score = 216 (81.1 bits), Expect = 6.3e-41, Sum P(3) = 6.3e-41
Identities = 55/143 (38%), Positives = 78/143 (54%)
Query: 948 LHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGK 1007
L E + SGKM+++ +L + G + L+FSQS LD++E +L R K
Sbjct: 816 LEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFL----RAQKYSY 871
Query: 1008 LWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIV 1067
L ++DG T + RQ L+ R+NE + + L++TR G LG+NL ANRVII
Sbjct: 872 L--------KMDGTTTIASRQPLITRYNEDAS--IFVFLLTTRVGGLGVNLTGANRVIIY 921
Query: 1068 DGSWNPTYDLQAIYRAWRCMDKQ 1090
D WNP+ D QA RAWR K+
Sbjct: 922 DPDWNPSTDTQARERAWRIGQKK 944
Score = 153 (58.9 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 50/150 (33%), Positives = 72/150 (48%)
Query: 553 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVI 612
+E ++P + KL +Q G+R++WE Q G IL MGLGKT Q+I
Sbjct: 483 DEGFKMPGFLFKKLFKYQQTGVRWLWELHCQQA----------GGILGDEMGLGKTIQII 532
Query: 613 AFL----YTAMRS--VNL---GLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLED 663
AFL Y+ +R+ N GL +IV P V+H W +EF W P P RV +L +
Sbjct: 533 AFLAGLSYSKIRTRGSNYRFEGLGPTIIVCPTTVMHQWVKEFHTWWP----PFRVAILHE 588
Query: 664 V-SRDRRAELLAKWRAK-GGVFLIGYTAFR 691
S + E L + A G+ + Y+ R
Sbjct: 589 TGSFTHKKEKLVRDIAHCHGILITSYSYIR 618
Score = 41 (19.5 bits), Expect = 6.3e-41, Sum P(3) = 6.3e-41
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 135 ADAIANEKELALSEEQRKKFRKVKEEDD 162
AD +E+ LS +R+K V++ DD
Sbjct: 389 ADLSEDERRRVLSHRKRQKKVTVQDIDD 416
Score = 38 (18.4 bits), Expect = 1.3e-40, Sum P(3) = 1.3e-40
Identities = 16/67 (23%), Positives = 25/67 (37%)
Query: 488 EETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNV 547
EE + + ER + L + K + + D S+G E G G V
Sbjct: 381 EEPQEAAGADLSEDERRRVLSHRKRQKKVTVQDIDDDFFPSSGEEAEGTGGGGGGRKVAR 440
Query: 548 VREKGEE 554
R+ G+E
Sbjct: 441 CRDDGDE 447
>DICTYBASE|DDB_G0281441 [details] [associations]
symbol:ercc6 "DNA excision repair protein 6"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0281441 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000152_GR GO:GO:0003677
EMBL:AAFI02000041 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0008094 KO:K10841
RefSeq:XP_640679.1 ProteinModelPortal:Q54TY2 STRING:Q54TY2
EnsemblProtists:DDB0232361 GeneID:8623063 KEGG:ddi:DDB_G0281441
InParanoid:Q54TY2 OMA:NIHKERW ProtClustDB:CLSZ2736745
Uniprot:Q54TY2
Length = 1655
Score = 326 (119.8 bits), Expect = 7.8e-41, Sum P(3) = 7.8e-41
Identities = 98/312 (31%), Positives = 152/312 (48%)
Query: 596 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKP 655
G I+ MGLGKT Q+++FL + S LG ALIV P +L NW +EF KW P P
Sbjct: 815 GGIVGDEMGLGKTVQIVSFLASLHYSRRLG-GPALIVAPATLLSNWIKEFHKWWP----P 869
Query: 656 LRVFMLEDVSR-------DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREI 708
RV + + +++ K KG + L T F ++ + +
Sbjct: 870 FRVGLFHSSGSGGGGNDGSDKEDIVKKIAEKGHILL---TTFDSIRINQEI--------- 917
Query: 709 CHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFV 768
L+ + ++ DE H I+N A+ T + KQ++ R+ L+GSP+QN L E + + DFV
Sbjct: 918 --LLKYHWEYVILDEGHKIRNPDAEITLSCKQLQTPHRVILSGSPIQNKLTELWSLFDFV 975
Query: 769 REGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKK 828
G LG+ F+++F PI G N++ V+ + + L + + ++ R + V K
Sbjct: 976 FPGRLGTLPIFKSQFSLPISVGGFANASPIQVQAAYKCAVALRDLISPYMLRRVKSDVLK 1035
Query: 829 DLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPG 888
LP K V+ L+P Q +LY FLD +ND S R++ G L +I NHP
Sbjct: 1036 SLPSKNEQVLMCPLTPFQEKLYLEFLD----SNDIKSVLDGRRNALYGIDILKKICNHPD 1091
Query: 889 ILQL-TKDKGYP 899
IL + D+ P
Sbjct: 1092 ILHMDASDEDRP 1103
Score = 207 (77.9 bits), Expect = 7.8e-41, Sum P(3) = 7.8e-41
Identities = 51/141 (36%), Positives = 80/141 (56%)
Query: 951 HTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWK 1010
H Y ++ S K+ ++ IL + GDK L+F Q+ LD++E Y+ R Q
Sbjct: 1104 HDYGNIERSAKLKVVETILPLWFKQGDKVLLFCQTRQMLDIVEQYI----RDSTQF---- 1155
Query: 1011 KGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGS 1070
++ R+DG T +RQ LVE+FN ++ + L++T+ G LG+NL ANRVI+ D
Sbjct: 1156 ---NYLRMDGTTSIRQRQCLVEQFN--IDPSLFIFLLTTKVGGLGLNLTGANRVILFDPD 1210
Query: 1071 WNPTYDLQAIYRAWRCMDKQS 1091
WNP+ D+QA R +R K++
Sbjct: 1211 WNPSTDMQARERVYRIGQKKA 1231
Score = 135 (52.6 bits), Expect = 1.4e-20, Sum P(3) = 1.4e-20
Identities = 40/106 (37%), Positives = 54/106 (50%)
Query: 553 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVI 612
+E +IP I L +QV +R+++E Q G I+ MGLGKT Q++
Sbjct: 782 DENFKIPFDIYKNLFEYQVTCVRWLYELHCQET----------GGIVGDEMGLGKTVQIV 831
Query: 613 AFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRV 658
+FL + S LG ALIV P +L NW +EF KW P P RV
Sbjct: 832 SFLASLHYSRRLG-GPALIVAPATLLSNWIKEFHKWWP----PFRV 872
Score = 50 (22.7 bits), Expect = 7.8e-41, Sum P(3) = 7.8e-41
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 491 KRKIAIEKER--QERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVV 548
K+K+ EKE+ Q+++K +Q KL D+ S+ + D Y N
Sbjct: 415 KKKVLTEKEKKKQKKMKKYSIQRDPPKKLQEFYDDFNDME---SLNISEDDNDDYNNNNN 471
Query: 549 REKGEE 554
E+ EE
Sbjct: 472 EEENEE 477
Score = 47 (21.6 bits), Expect = 1.6e-40, Sum P(3) = 1.6e-40
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 121 EIEDVDGNSDDPFVADAIA--NEKEL--ALSEEQRKKFRKVKEEDD 162
EIED + +D + N+K + +S +RK+ + V ++DD
Sbjct: 587 EIEDNEDEDEDEIEEEFTLKKNKKSIKSTISNNKRKRKQDVDDDDD 632
Score = 41 (19.5 bits), Expect = 4.9e-39, Sum P(4) = 4.9e-39
Identities = 7/19 (36%), Positives = 16/19 (84%)
Query: 141 EKELALSEEQRKKFRKVKE 159
+K+ L+E+++KK +K+K+
Sbjct: 414 KKKKVLTEKEKKKQKKMKK 432
Score = 39 (18.8 bits), Expect = 4.9e-39, Sum P(4) = 4.9e-39
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 209 KSLSNKKTDDGDMPGNNNE 227
+SL+ + D+ D NNNE
Sbjct: 454 ESLNISEDDNDDYNNNNNE 472
Score = 38 (18.4 bits), Expect = 1.4e-39, Sum P(3) = 1.4e-39
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 121 EIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDA-NMD 166
+IE + + P + +N K +S + K K +DD N+D
Sbjct: 481 DIEKEENDESPPPKSSKKSNSKLKKISTPKSKSKPKNNNDDDLLNLD 527
>UNIPROTKB|Q03468 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0007256 "activation of JNKK activity" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEA] [GO:0010332 "response
to gamma radiation" evidence=IEA] [GO:0045494 "photoreceptor cell
maintenance" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0009411 "response to UV"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0006284
"base-excision repair" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0005730 GO:GO:0032403 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 Orphanet:279 GO:GO:0045494
GO:GO:0010332 GO:GO:0006366 GO:GO:0004386 GO:GO:0010165
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 EMBL:CH471187 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 Orphanet:1466 EMBL:L04791 EMBL:AY204752 EMBL:AL138760
IPI:IPI00414779 PIR:A44224 RefSeq:NP_000115.1 UniGene:Hs.654449
ProteinModelPortal:Q03468 SMR:Q03468 DIP:DIP-193N IntAct:Q03468
MINT:MINT-1193928 STRING:Q03468 PhosphoSite:Q03468 DMDM:416959
PaxDb:Q03468 PRIDE:Q03468 Ensembl:ENST00000355832 GeneID:2074
KEGG:hsa:2074 UCSC:uc001jhr.4 CTD:2074 GeneCards:GC10M050663
HGNC:HGNC:3438 MIM:133540 MIM:214150 MIM:278800 MIM:600630
MIM:609413 MIM:613761 neXtProt:NX_Q03468 Orphanet:90321
Orphanet:90322 Orphanet:90324 Orphanet:1569 Orphanet:178338
PharmGKB:PA27852 HOGENOM:HOG000170952 HOVERGEN:HBG051502
InParanoid:Q03468 KO:K10841 OMA:NGEMQIF OrthoDB:EOG476JZF
PhylomeDB:Q03468 ChiTaRS:ERCC6 GenomeRNAi:2074 NextBio:8437
ArrayExpress:Q03468 Bgee:Q03468 CleanEx:HS_ERCC6
Genevestigator:Q03468 GermOnline:ENSG00000032514 GO:GO:0000303
Uniprot:Q03468
Length = 1493
Score = 321 (118.1 bits), Expect = 8.6e-41, Sum P(3) = 8.6e-41
Identities = 100/307 (32%), Positives = 158/307 (51%)
Query: 596 GCILAHTMGLGKTFQVIAFL----YTAMRS--VNL---GLRTALIVTPVNVLHNWKQEFM 646
G IL MGLGKT Q+IAFL Y+ +R+ N GL +IV P V+H W +EF
Sbjct: 527 GGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFH 586
Query: 647 KWRPSELKPLRVFMLEDV-SRDRRAELLAKWRAK-GGVFLIGYTAFRNLSFGKHVKDRNM 704
W P P RV +L + S + E L + A G+ + Y+ R + +D ++
Sbjct: 587 TWWP----PFRVAILHETGSYTHKKEKLIRDVAHCHGILITSYSYIRLM------QD-DI 635
Query: 705 AREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCM 764
+R H ++ DE H I+N A T A KQ + RI L+GSP+QNNL E + +
Sbjct: 636 SRYDWH-------YVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSL 688
Query: 765 VDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV-QRMDM 823
DF+ G LG+ F +F PI G ++N++ VK + + +L + + ++ +RM
Sbjct: 689 FDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS 748
Query: 824 NV-VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQ 882
+V + LP K V+ +L+ Q ++Y+ F+D R+ N +++ F+G AL +
Sbjct: 749 DVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVY--RILNGEMQ--IFSGLIALRK 804
Query: 883 IWNHPGI 889
I NHP +
Sbjct: 805 ICNHPDL 811
Score = 217 (81.4 bits), Expect = 8.6e-41, Sum P(3) = 8.6e-41
Identities = 55/146 (37%), Positives = 80/146 (54%)
Query: 945 NDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGK 1004
+D L E + SGKM+++ +L + G + L+FSQS LD++E +L R K
Sbjct: 824 DDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFL----RAQK 879
Query: 1005 QGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRV 1064
L ++DG T + RQ L+ R+NE + + L++TR G LG+NL ANRV
Sbjct: 880 YTYL--------KMDGTTTIASRQPLITRYNEDTS--IFVFLLTTRVGGLGVNLTGANRV 929
Query: 1065 IIVDGSWNPTYDLQAIYRAWRCMDKQ 1090
+I D WNP+ D QA RAWR K+
Sbjct: 930 VIYDPDWNPSTDTQARERAWRIGQKK 955
Score = 154 (59.3 bits), Expect = 4.9e-23, Sum P(3) = 4.9e-23
Identities = 50/150 (33%), Positives = 72/150 (48%)
Query: 553 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVI 612
+E ++P + KL +Q G+R++WE Q G IL MGLGKT Q+I
Sbjct: 494 DEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQA----------GGILGDEMGLGKTIQII 543
Query: 613 AFL----YTAMRS--VNL---GLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLED 663
AFL Y+ +R+ N GL +IV P V+H W +EF W P P RV +L +
Sbjct: 544 AFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWP----PFRVAILHE 599
Query: 664 V-SRDRRAELLAKWRAK-GGVFLIGYTAFR 691
S + E L + A G+ + Y+ R
Sbjct: 600 TGSYTHKKEKLIRDVAHCHGILITSYSYIR 629
Score = 43 (20.2 bits), Expect = 8.6e-41, Sum P(3) = 8.6e-41
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 128 NSDDPFVADAIANEKELALSE-EQRKKFRKVKEEDDANMD 166
+ D+ + + +L L + E+R K EE DA D
Sbjct: 455 DGDEDYYKQRLRRWNKLRLQDKEKRLKLEDDSEESDAEFD 494
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 325 (119.5 bits), Expect = 1.0e-40, Sum P(3) = 1.0e-40
Identities = 100/307 (32%), Positives = 158/307 (51%)
Query: 596 GCILAHTMGLGKTFQVIAFL----YTAMRS--VNL---GLRTALIVTPVNVLHNWKQEFM 646
G IL MGLGKT Q+IAFL Y+ +R+ N GL +IV P V+H W +EF
Sbjct: 523 GGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFKGLGPTIIVCPTTVMHQWVKEFH 582
Query: 647 KWRPSELKPLRVFMLEDV-SRDRRAELLAKWRAK-GGVFLIGYTAFRNLSFGKHVKDRNM 704
W P P RV +L + S ++ E L + A G+ + Y+ R + +D ++
Sbjct: 583 TWWP----PFRVAILHETGSYTQKKEKLIRDIAHCHGILITSYSYIRLM------QD-DI 631
Query: 705 AREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCM 764
+R H ++ DE H I+N A T A KQ + RI L+GSP+QNNL E + +
Sbjct: 632 SRHDWH-------YVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSL 684
Query: 765 VDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV-QRMDM 823
DF+ G LG+ F +F PI G ++N++ VK + + +L + + ++ +RM
Sbjct: 685 FDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS 744
Query: 824 NV-VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQ 882
+V + LP K V+ +L+ Q ++Y+ F+D R+ N ++ F+G AL +
Sbjct: 745 DVKMSLSLPDKNEQVLFCRLTEEQHKVYQNFIDSKEVY--RILNGDMQ--IFSGLVALRK 800
Query: 883 IWNHPGI 889
I NHP +
Sbjct: 801 ICNHPDL 807
Score = 213 (80.0 bits), Expect = 1.0e-40, Sum P(3) = 1.0e-40
Identities = 52/132 (39%), Positives = 75/132 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKM+++ +L + G + L+FSQS LD++E +L R K L ++
Sbjct: 833 SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFL----RAQKYSYL--------KM 880
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T + RQ L+ R+NE + + L++TR G +G+NL ANRVII D WNP+ D Q
Sbjct: 881 DGTTAIASRQPLITRYNEDTS--IFVFLLTTRVGGIGVNLTGANRVIIYDPDWNPSTDTQ 938
Query: 1079 AIYRAWRCMDKQ 1090
A RAWR K+
Sbjct: 939 ARERAWRIGQKK 950
Score = 148 (57.2 bits), Expect = 6.7e-22, Sum P(3) = 6.7e-22
Identities = 49/146 (33%), Positives = 71/146 (48%)
Query: 557 RIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL- 615
++P + KL +Q G+R++WE Q G IL MGLGKT Q+IAFL
Sbjct: 494 KMPGFLFRKLFKYQQTGVRWLWELHCQQA----------GGILGDEMGLGKTIQIIAFLA 543
Query: 616 ---YTAMRS--VNL---GLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDV-SR 666
Y+ +R+ N GL +IV P V+H W +EF W P P RV +L + S
Sbjct: 544 GLSYSKIRTRGSNYRFKGLGPTIIVCPTTVMHQWVKEFHTWWP----PFRVAILHETGSY 599
Query: 667 DRRAELLAKWRAK-GGVFLIGYTAFR 691
++ E L + A G+ + Y+ R
Sbjct: 600 TQKKEKLIRDIAHCHGILITSYSYIR 625
Score = 42 (19.8 bits), Expect = 1.0e-40, Sum P(3) = 1.0e-40
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 141 EKELALSEEQRKKFRKVKEEDDANMD 166
E+ +S++Q +K+EDD NM+
Sbjct: 23 EQSQCVSDKQEMT---IKQEDDGNME 45
Score = 37 (18.1 bits), Expect = 0.00074, Sum P(3) = 0.00074
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 851 KRFLDLHGFTNDRVSNEK 868
++F D + TND S+E+
Sbjct: 1049 RKFPDSNASTNDTTSSEE 1066
>ZFIN|ZDB-GENE-070228-1 [details] [associations]
symbol:ercc6 "excision repair cross-complementing
rodent repair deficiency, complementation group 6" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-070228-1 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
EMBL:CR762493 IPI:IPI00933448 RefSeq:XP_688972.2
Ensembl:ENSDART00000112380 GeneID:560477 KEGG:dre:560477
NextBio:20883461 Bgee:F1RDN1 Uniprot:F1RDN1
Length = 1390
Score = 320 (117.7 bits), Expect = 1.3e-40, Sum P(3) = 1.3e-40
Identities = 98/307 (31%), Positives = 151/307 (49%)
Query: 596 GCILAHTMGLGKTFQVIAFL----YTAM--RSVNL---GLRTALIVTPVNVLHNWKQEFM 646
G IL MGLGKT Q+IAFL Y+ + R N GL +IV P V+H W +EF
Sbjct: 504 GGILGDEMGLGKTIQIIAFLAGLSYSKLKTRGSNYRYAGLGPTVIVCPATVMHQWVKEFH 563
Query: 647 KWRPSELKPLRVFMLEDVSR--DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNM 704
W P P RV +L D ++ +L+ + A G+ + Y+ R + +
Sbjct: 564 TWWP----PFRVAVLHDTGSFTSKKEKLIPEIVASHGILITSYSYIR-------IMQDYI 612
Query: 705 AREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCM 764
R H ++ DE H I+N A T A KQ + R L+GSP+QNNL E + +
Sbjct: 613 QRYDWH-------YVILDEGHKIRNPNAGVTTACKQFRTPHRFILSGSPMQNNLKELWSL 665
Query: 765 VDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV-QRMDM 823
DFV G LG+ F +F PI G + N++ V+ + + +L + + ++ +RM
Sbjct: 666 FDFVFPGKLGTLPVFMEQFSVPITMGGYANASPVQVQTAYKCACVLRDTINPYLLRRMKA 725
Query: 824 NV-VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQ 882
+V LP K V+ +L+ QR++Y+ FLD ++ N ++ F+G AL +
Sbjct: 726 DVKANLSLPDKNEQVLFCRLTEDQRQVYQTFLDSKEVY--QILNGDMQ--VFSGLIALRK 781
Query: 883 IWNHPGI 889
I NHP +
Sbjct: 782 ICNHPDL 788
Score = 217 (81.4 bits), Expect = 1.3e-40, Sum P(3) = 1.3e-40
Identities = 50/146 (34%), Positives = 80/146 (54%)
Query: 945 NDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGK 1004
+ L E + SGKM+++ +L + G + L+F+QS L+++E ++ +
Sbjct: 802 DQLTEEEHFGYWKRSGKMIVVESLLRLWHKQGHRVLLFTQSRQMLEILEVFVKE------ 855
Query: 1005 QGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRV 1064
G + ++DG T + RQ L+ +FN+ NK + +++TR G LG+NL ANRV
Sbjct: 856 ------NGFSYLKMDGTTTIASRQPLIAQFNQ--NKDIFVFILTTRVGGLGVNLTGANRV 907
Query: 1065 IIVDGSWNPTYDLQAIYRAWRCMDKQ 1090
+I D WNP+ D QA RAWR KQ
Sbjct: 908 VIYDPDWNPSTDTQARERAWRIGQKQ 933
Score = 169 (64.5 bits), Expect = 1.7e-24, Sum P(3) = 1.7e-24
Identities = 51/150 (34%), Positives = 72/150 (48%)
Query: 553 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVI 612
+E +IP + KL +Q G+R+MWE Q G IL MGLGKT Q+I
Sbjct: 471 DEGFKIPGFLWKKLFKYQQTGVRWMWELHCQQA----------GGILGDEMGLGKTIQII 520
Query: 613 AFL----YTAM--RSVNL---GLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLED 663
AFL Y+ + R N GL +IV P V+H W +EF W P P RV +L D
Sbjct: 521 AFLAGLSYSKLKTRGSNYRYAGLGPTVIVCPATVMHQWVKEFHTWWP----PFRVAVLHD 576
Query: 664 VSR--DRRAELLAKWRAKGGVFLIGYTAFR 691
++ +L+ + A G+ + Y+ R
Sbjct: 577 TGSFTSKKEKLIPEIVASHGILITSYSYIR 606
Score = 41 (19.5 bits), Expect = 1.3e-40, Sum P(3) = 1.3e-40
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 116 SGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDAN 164
S + + E+ + + DD D + +++ K RK K+ED+++
Sbjct: 359 SDELMDPEEPERDDDDELWVDDHEEYQLKPYKKKKEPKTRKPKKEDESD 407
>GENEDB_PFALCIPARUM|PF08_0126 [details] [associations]
symbol:PF08_0126 "DNA repair protein rad54,
putative" species:5833 "Plasmodium falciparum" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003684 GO:GO:0000724
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR005012 Pfam:PF03344 EMBL:AL844507 HOGENOM:HOG000204521
KO:K10875 OMA:HASKHRV RefSeq:XP_001349480.1
ProteinModelPortal:Q8IAN4 IntAct:Q8IAN4 MINT:MINT-1564728
EnsemblProtists:PF08_0126:mRNA GeneID:2655325 KEGG:pfa:PF08_0126
EuPathDB:PlasmoDB:PF3D7_0803400 Uniprot:Q8IAN4
Length = 1239
Score = 369 (135.0 bits), Expect = 1.5e-40, Sum P(2) = 1.5e-40
Identities = 105/363 (28%), Positives = 173/363 (47%)
Query: 581 IIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS---VNLGLRTALIVTPVNV 637
+ + + +K DK GCILA MGLGKT Q I LYT ++ +R LI+ P ++
Sbjct: 144 VFECLMNIKD-DKISGCILADDMGLGKTLQSITVLYTLLKQGFHKKCAVRRCLILCPASL 202
Query: 638 LHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLA--KWRAKGGVFLIGYTAFRNLSF 695
++NW E KW P+ V + D ++++ L K+ + V + Y FR
Sbjct: 203 INNWNDEISKWIPNRCN---VTCVNDNAKEKIVSKLEGFKYDIQSTVLICSYECFR---I 256
Query: 696 GKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQ 755
D++ D+++CDEAH +KN + T ++ + ++R+ L+G+P+Q
Sbjct: 257 NNEFLDKSSI-----------DMIICDEAHRLKNDKTKTYTSIYNLTAKKRLLLSGTPIQ 305
Query: 756 NNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLK 815
N+L E+Y ++ + FR +F NPI G+ ++T ++ +I ++R L
Sbjct: 306 NDLGEFYALISLCNPDLFDDINLFRKKFANPILIGRDKDATEKEQEIASERLTELSNITN 365
Query: 816 GFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFL-DLHGFTNDRVSNEKIRKSFF 874
F+ R N++ K LP K + I +KL+P+Q LY FL D ND +N K+ +
Sbjct: 366 KFILRRTNNLLSKVLPVKYLINIFIKLNPIQEALYVLFLKDKKILKNDNTNN-KV--NVL 422
Query: 875 AGYQALAQIWNHPGILQLT--KDKGYPSRXXXXXXXXXXNMDYNVVI---GEKPRNMNDF 929
+ L +I NHP +L + K+ G + M N+ I G K N ND
Sbjct: 423 INIKKLEKICNHPLLLNVNDIKEIGQVT-LWKLIEDVIFEMQTNMKICNRGNKRDNKNDS 481
Query: 930 LQG 932
G
Sbjct: 482 KSG 484
Score = 170 (64.9 bits), Expect = 4.4e-19, Sum P(2) = 4.4e-19
Identities = 43/143 (30%), Positives = 73/143 (51%)
Query: 554 EAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIA 613
+ + + ++ L+ HQ G++F++E ++ +K DK GCILA MGLGKT Q I
Sbjct: 121 DKIEVDPILAQYLREHQREGVQFVFECLMN----IKD-DKISGCILADDMGLGKTLQSIT 175
Query: 614 FLYTAMRS---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRA 670
LYT ++ +R LI+ P ++++NW E KW P+ V + D ++++
Sbjct: 176 VLYTLLKQGFHKKCAVRRCLILCPASLINNWNDEISKWIPNRCN---VTCVNDNAKEKIV 232
Query: 671 ELLA--KWRAKGGVFLIGYTAFR 691
L K+ + V + Y FR
Sbjct: 233 SKLEGFKYDIQSTVLICSYECFR 255
Score = 155 (59.6 bits), Expect = 1.5e-40, Sum P(2) = 1.5e-40
Identities = 42/130 (32%), Positives = 68/130 (52%)
Query: 957 DYSGKMVLLLDIL-TMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
++S K +LL +L + N DK ++ S TLD +E + ++K +
Sbjct: 607 NFSCKFLLLHFLLKNIKQNTNDKVVIVSNYTQTLDYMEILCKE--------NMYK----F 654
Query: 1016 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1075
RLDG +R K++ F + + L+S+++G GINL S+NR+I++D WNP
Sbjct: 655 VRLDGGINIKKRHKVINDFTHSAD--IFIFLLSSKSGGCGINLISSNRLILLDPDWNPAN 712
Query: 1076 DLQAIYRAWR 1085
D QA+ R WR
Sbjct: 713 DKQALARVWR 722
Score = 47 (21.6 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 10/35 (28%), Positives = 23/35 (65%)
Query: 39 SDINWNSVNKIFSGDVSEKCAAFGSKHWASVYLAS 73
S+IN N++N + + + +C + G+++ AS Y+ +
Sbjct: 544 SNIN-NNINSNMNNNTNLRCGSRGNQNDASGYVGN 577
Score = 37 (18.1 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 313 ENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHP-ILNVIV 355
E + A++ +++ KF NN+ +V P ++N+ +
Sbjct: 347 EKEQEIASERLTELSNITNKFILRRTNNLLSKVLPVKYLINIFI 390
>UNIPROTKB|Q8IAN4 [details] [associations]
symbol:PF08_0126 "DNA repair protein rad54, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003684 "damaged DNA binding" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003684 GO:GO:0000724
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR005012 Pfam:PF03344 EMBL:AL844507 HOGENOM:HOG000204521
KO:K10875 OMA:HASKHRV RefSeq:XP_001349480.1
ProteinModelPortal:Q8IAN4 IntAct:Q8IAN4 MINT:MINT-1564728
EnsemblProtists:PF08_0126:mRNA GeneID:2655325 KEGG:pfa:PF08_0126
EuPathDB:PlasmoDB:PF3D7_0803400 Uniprot:Q8IAN4
Length = 1239
Score = 369 (135.0 bits), Expect = 1.5e-40, Sum P(2) = 1.5e-40
Identities = 105/363 (28%), Positives = 173/363 (47%)
Query: 581 IIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS---VNLGLRTALIVTPVNV 637
+ + + +K DK GCILA MGLGKT Q I LYT ++ +R LI+ P ++
Sbjct: 144 VFECLMNIKD-DKISGCILADDMGLGKTLQSITVLYTLLKQGFHKKCAVRRCLILCPASL 202
Query: 638 LHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLA--KWRAKGGVFLIGYTAFRNLSF 695
++NW E KW P+ V + D ++++ L K+ + V + Y FR
Sbjct: 203 INNWNDEISKWIPNRCN---VTCVNDNAKEKIVSKLEGFKYDIQSTVLICSYECFR---I 256
Query: 696 GKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQ 755
D++ D+++CDEAH +KN + T ++ + ++R+ L+G+P+Q
Sbjct: 257 NNEFLDKSSI-----------DMIICDEAHRLKNDKTKTYTSIYNLTAKKRLLLSGTPIQ 305
Query: 756 NNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLK 815
N+L E+Y ++ + FR +F NPI G+ ++T ++ +I ++R L
Sbjct: 306 NDLGEFYALISLCNPDLFDDINLFRKKFANPILIGRDKDATEKEQEIASERLTELSNITN 365
Query: 816 GFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFL-DLHGFTNDRVSNEKIRKSFF 874
F+ R N++ K LP K + I +KL+P+Q LY FL D ND +N K+ +
Sbjct: 366 KFILRRTNNLLSKVLPVKYLINIFIKLNPIQEALYVLFLKDKKILKNDNTNN-KV--NVL 422
Query: 875 AGYQALAQIWNHPGILQLT--KDKGYPSRXXXXXXXXXXNMDYNVVI---GEKPRNMNDF 929
+ L +I NHP +L + K+ G + M N+ I G K N ND
Sbjct: 423 INIKKLEKICNHPLLLNVNDIKEIGQVT-LWKLIEDVIFEMQTNMKICNRGNKRDNKNDS 481
Query: 930 LQG 932
G
Sbjct: 482 KSG 484
Score = 170 (64.9 bits), Expect = 4.4e-19, Sum P(2) = 4.4e-19
Identities = 43/143 (30%), Positives = 73/143 (51%)
Query: 554 EAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIA 613
+ + + ++ L+ HQ G++F++E ++ +K DK GCILA MGLGKT Q I
Sbjct: 121 DKIEVDPILAQYLREHQREGVQFVFECLMN----IKD-DKISGCILADDMGLGKTLQSIT 175
Query: 614 FLYTAMRS---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRA 670
LYT ++ +R LI+ P ++++NW E KW P+ V + D ++++
Sbjct: 176 VLYTLLKQGFHKKCAVRRCLILCPASLINNWNDEISKWIPNRCN---VTCVNDNAKEKIV 232
Query: 671 ELLA--KWRAKGGVFLIGYTAFR 691
L K+ + V + Y FR
Sbjct: 233 SKLEGFKYDIQSTVLICSYECFR 255
Score = 155 (59.6 bits), Expect = 1.5e-40, Sum P(2) = 1.5e-40
Identities = 42/130 (32%), Positives = 68/130 (52%)
Query: 957 DYSGKMVLLLDIL-TMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
++S K +LL +L + N DK ++ S TLD +E + ++K +
Sbjct: 607 NFSCKFLLLHFLLKNIKQNTNDKVVIVSNYTQTLDYMEILCKE--------NMYK----F 654
Query: 1016 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1075
RLDG +R K++ F + + L+S+++G GINL S+NR+I++D WNP
Sbjct: 655 VRLDGGINIKKRHKVINDFTHSAD--IFIFLLSSKSGGCGINLISSNRLILLDPDWNPAN 712
Query: 1076 DLQAIYRAWR 1085
D QA+ R WR
Sbjct: 713 DKQALARVWR 722
Score = 47 (21.6 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 10/35 (28%), Positives = 23/35 (65%)
Query: 39 SDINWNSVNKIFSGDVSEKCAAFGSKHWASVYLAS 73
S+IN N++N + + + +C + G+++ AS Y+ +
Sbjct: 544 SNIN-NNINSNMNNNTNLRCGSRGNQNDASGYVGN 577
Score = 37 (18.1 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 313 ENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHP-ILNVIV 355
E + A++ +++ KF NN+ +V P ++N+ +
Sbjct: 347 EKEQEIASERLTELSNITNKFILRRTNNLLSKVLPVKYLINIFI 390
>UNIPROTKB|D3ZZZ1 [details] [associations]
symbol:Ercc6 "Protein Ercc6" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311509
GO:GO:0005524 GO:GO:0008630 GO:GO:0005730 GO:GO:0006284
GO:GO:0003677 GO:GO:0009636 GO:GO:0003682 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257
GO:GO:0006283 GO:GO:0008094 GO:GO:0008023 GO:GO:0032786
GO:GO:0006290 GO:GO:0007256 GO:GO:0000303 IPI:IPI00358023
Ensembl:ENSRNOT00000038493 ArrayExpress:D3ZZZ1 Uniprot:D3ZZZ1
Length = 1475
Score = 324 (119.1 bits), Expect = 1.6e-40, Sum P(3) = 1.6e-40
Identities = 102/307 (33%), Positives = 154/307 (50%)
Query: 596 GCILAHTMGLGKTFQVIAFL----YTAMRS--VNL---GLRTALIVTPVNVLHNWKQEFM 646
G IL MGLGKT Q+IAFL Y+ +R+ N GL LIV P V+H W +EF
Sbjct: 521 GGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTLIVCPTTVMHQWVKEFH 580
Query: 647 KWRPSELKPLRVFMLEDV-SRDRRAELLAKWRAK-GGVFLIGYTAFRNLSFGKHVKDRNM 704
W P P RV +L + S R E L + GV + Y+ R + +D ++
Sbjct: 581 TWWP----PFRVAILHETGSCAHRKERLVRDIVHCHGVLITSYSYIRLM------QD-DI 629
Query: 705 AREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCM 764
+R H ++ DE H I+N A T A KQ + RI L+GSP+QNNL E + +
Sbjct: 630 SRHDWH-------YVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSL 682
Query: 765 VDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV-QRMDM 823
DF G LG+ F +F PI G ++N++ VK + + +L + + ++ +RM
Sbjct: 683 FDFTFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS 742
Query: 824 NV-VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQ 882
+V + LP K V+ +L+ Q ++Y+ F+D R+ N + F+G AL +
Sbjct: 743 DVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKAVY--RILNGE--NQIFSGLVALRK 798
Query: 883 IWNHPGI 889
I NHP +
Sbjct: 799 ICNHPDL 805
Score = 209 (78.6 bits), Expect = 1.6e-40, Sum P(3) = 1.6e-40
Identities = 54/145 (37%), Positives = 78/145 (53%)
Query: 946 DLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQ 1005
D L E + SGKM+++ +L + G + L+FSQS L ++E +L R K
Sbjct: 819 DGLEEEQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLHILEVFL----RAHKY 874
Query: 1006 GKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVI 1065
L ++DG T + RQ L+ ++NE + + L++TR G LG+NL ANRVI
Sbjct: 875 SYL--------KMDGTTTIASRQPLITKYNEDTS--IFVFLLTTRVGGLGVNLTGANRVI 924
Query: 1066 IVDGSWNPTYDLQAIYRAWRCMDKQ 1090
I D WNP+ D QA RAWR K+
Sbjct: 925 IYDPDWNPSTDTQARERAWRIGQKK 949
Score = 156 (60.0 bits), Expect = 1.3e-22, Sum P(3) = 1.3e-22
Identities = 52/150 (34%), Positives = 71/150 (47%)
Query: 553 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVI 612
+E ++P + KL +Q G+R++WE Q G IL MGLGKT Q+I
Sbjct: 488 DEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQA----------GGILGDEMGLGKTIQII 537
Query: 613 AFL----YTAMRS--VNL---GLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLED 663
AFL Y+ +R+ N GL LIV P V+H W +EF W P P RV +L +
Sbjct: 538 AFLAGLSYSKIRTRGSNYRFEGLGPTLIVCPTTVMHQWVKEFHTWWP----PFRVAILHE 593
Query: 664 V-SRDRRAELLAKWRAK-GGVFLIGYTAFR 691
S R E L + GV + Y+ R
Sbjct: 594 TGSCAHRKERLVRDIVHCHGVLITSYSYIR 623
Score = 48 (22.0 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 641 WKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVF 683
+KQ +W L+ LED S + AE ++ G +F
Sbjct: 456 YKQRLRRWNRLRLQDKEKLKLEDDSEESDAEFDEGFKVPGFLF 498
Score = 45 (20.9 bits), Expect = 1.6e-40, Sum P(3) = 1.6e-40
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 128 NSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMD 166
+ D+ + + L L ++++ K EE DA D
Sbjct: 450 DGDEDYYKQRLRRWNRLRLQDKEKLKLEDDSEESDAEFD 488
>UNIPROTKB|Q9Y620 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=TAS] [GO:0006312 "mitotic recombination"
evidence=TAS] [GO:0007131 "reciprocal meiotic recombination"
evidence=TAS] [GO:0003724 "RNA helicase activity" evidence=TAS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0000724 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0006312 GO:GO:0007131
GO:GO:0003724 EMBL:AC023632 UniGene:Hs.30561 UniGene:Hs.657457
GeneID:25788 KEGG:hsa:25788 CTD:25788 KO:K10877 NextBio:46945
GO:GO:0015616 HOGENOM:HOG000204521 HOVERGEN:HBG058654
OrthoDB:EOG4SBDX5 EMBL:AF112481 EMBL:AL523600 EMBL:AP003534
EMBL:BC001965 IPI:IPI00018281 IPI:IPI00797041 RefSeq:NP_001192192.1
RefSeq:NP_036547.1 ProteinModelPortal:Q9Y620 SMR:Q9Y620
IntAct:Q9Y620 MINT:MINT-1441930 STRING:Q9Y620 PhosphoSite:Q9Y620
DMDM:51316548 PaxDb:Q9Y620 PRIDE:Q9Y620 Ensembl:ENST00000297592
Ensembl:ENST00000336148 UCSC:uc003ygk.3 GeneCards:GC08M095384
HGNC:HGNC:17228 HPA:HPA007087 MIM:604289 neXtProt:NX_Q9Y620
PharmGKB:PA134927202 InParanoid:Q9Y620 OMA:VCKRHGY PhylomeDB:Q9Y620
ChiTaRS:RAD54B GenomeRNAi:25788 ArrayExpress:Q9Y620 Bgee:Q9Y620
CleanEx:HS_RAD54B Genevestigator:Q9Y620 GermOnline:ENSG00000197275
Uniprot:Q9Y620
Length = 910
Score = 259 (96.2 bits), Expect = 3.3e-40, Sum P(4) = 3.3e-40
Identities = 53/140 (37%), Positives = 82/140 (58%)
Query: 717 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 776
D+L+CDE H +KN+ TT AL + C++RI LTG+P+QN+L E++ ++DFV G LGS
Sbjct: 426 DLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQEFFALIDFVNPGILGSL 485
Query: 777 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKKDLPPKTV 835
+R ++ PI + S SE+ K + +R L G F+ R ++ K LPPK
Sbjct: 486 SSYRKIYEEPIILSREP-SASEEEKELGERRAAELTCLTGLFILRRTQEIINKYLPPKIE 544
Query: 836 FVITVKLSPLQRRLYKRFLD 855
V+ + LQ LY++ L+
Sbjct: 545 NVVFCRPGALQIELYRKLLN 564
Score = 156 (60.0 bits), Expect = 3.3e-40, Sum P(4) = 3.3e-40
Identities = 49/140 (35%), Positives = 74/140 (52%)
Query: 566 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLG 625
L+ HQ GI F++E + +R +G G ILA MGLGKT Q I+ ++T G
Sbjct: 296 LRPHQKEGIIFLYE-CVMGMRM--NGR--CGAILADEMGLGKTLQCISLIWTLQCQGPYG 350
Query: 626 ----LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGG 681
++ LIVTP ++++NWK+EF KW SE +++F V +D + E K
Sbjct: 351 GKPVIKKTLIVTPGSLVNNWKKEFQKWLGSER--IKIFT---VDQDHKVEEFIK-SIFYS 404
Query: 682 VFLIGYTAF-RNLSFGKHVK 700
V +I Y R+L K++K
Sbjct: 405 VLIISYEMLLRSLDQIKNIK 424
Score = 153 (58.9 bits), Expect = 3.3e-40, Sum P(4) = 3.3e-40
Identities = 46/144 (31%), Positives = 78/144 (54%)
Query: 944 WNDLLHEHTYKELDYSGKMVLLLDILTMCSNMG--DKSLVFSQSIPTLDLIEFYLSKLPR 1001
+N LL T KE SGK+ +L +L + + +K ++ S TL++++ + K
Sbjct: 631 YNPLLF--TEKE---SGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQ-EVCK--- 681
Query: 1002 PGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSA 1061
+ G + RLDG+T S+RQ++V+ FN + L+S++AG +G+NL
Sbjct: 682 --------RHGYAYTRLDGQTPISQRQQIVDGFNSQ-HSSFFIFLLSSKAGGVGLNLIGG 732
Query: 1062 NRVIIVDGSWNPTYDLQAIYRAWR 1085
+ +I+ D WNP D+QA+ R WR
Sbjct: 733 SHLILYDIDWNPATDIQAMSRVWR 756
Score = 46 (21.3 bits), Expect = 3.3e-40, Sum P(4) = 3.3e-40
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFS 512
LD +++A+ KE++E+ SL FS
Sbjct: 96 LDPPHTVHSAPKEVAVSKEQEEKSDSLVKYFS 127
Score = 37 (18.1 bits), Expect = 2.8e-39, Sum P(4) = 2.8e-39
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 142 KELALSEEQRKK 153
KE+A+S+EQ +K
Sbjct: 107 KEVAVSKEQEEK 118
>MGI|MGI:1923501 [details] [associations]
symbol:Ercc6l2 "excision repair cross-complementing rodent
repair deficiency, complementation group 6 like 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1923501
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006281 GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 CTD:375748 HOGENOM:HOG000074171
HOVERGEN:HBG108393 OMA:HGNRKDN EMBL:AK002307 EMBL:AK082850
EMBL:AC154248 EMBL:AF217319 EMBL:BC032964 IPI:IPI00403243
IPI:IPI00754737 IPI:IPI00857027 RefSeq:NP_075996.2
UniGene:Mm.186610 ProteinModelPortal:Q9JIM3 SMR:Q9JIM3 PRIDE:Q9JIM3
Ensembl:ENSMUST00000021926 Ensembl:ENSMUST00000067821 GeneID:76251
KEGG:mmu:76251 UCSC:uc007qyb.2 UCSC:uc007qyc.2 NextBio:344851
Bgee:Q9JIM3 CleanEx:MM_0610007P08RIK Genevestigator:Q9JIM3
Uniprot:Q9JIM3
Length = 699
Score = 295 (108.9 bits), Expect = 5.2e-40, Sum P(2) = 5.2e-40
Identities = 93/321 (28%), Positives = 152/321 (47%)
Query: 553 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVI 612
E+ IP +I+ L+ +Q G +F++ + I+ G GCIL MGLGKT QVI
Sbjct: 109 EDGDSIPYTINRYLRDYQREGAQFLYRHYIE----------GRGCILGDDMGLGKTIQVI 158
Query: 613 AFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAEL 672
+FL + G R + N + + + MK +P ++ +S +
Sbjct: 159 SFLAAVLHKK--GTREDI----ENNMPEFLLKSMKKKPPSTAKKMFLIVAPLS------V 206
Query: 673 LAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAR---EICH-ALQDGPDILVC------- 721
L W+ + + GY FR KD + R C AL + +C
Sbjct: 207 LYNWKDELDTW--GY--FRVTVLHGSKKDNELLRLKQRKCEIALTTYETLRLCLEELNSL 262
Query: 722 -------DEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLG 774
DEAH IKN +A T+ +K VKC+ RI LTG+ LQNN+ E +C++D+ G LG
Sbjct: 263 EWSAIIVDEAHRIKNPKARVTEVMKAVKCKVRIGLTGTVLQNNMKELWCVMDWAVPGLLG 322
Query: 775 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT 834
S F+ +F +P+E+GQ +T ++ + H L +++ G+ R ++K LP K
Sbjct: 323 SRIHFKKQFSDPVEHGQRHTATKRELATGRKAMHRLAKKMSGWFLRRTKTLIKGQLPKKE 382
Query: 835 VFVITVKLSPLQRRLYKRFLD 855
++ L+ Q+ +Y+ L+
Sbjct: 383 DRMVYCSLTDFQKAVYQTVLE 403
Score = 218 (81.8 bits), Expect = 5.2e-40, Sum P(2) = 5.2e-40
Identities = 57/140 (40%), Positives = 76/140 (54%)
Query: 952 TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKK 1011
T + YSGKM +L +L DK L+FS S LD+++ Y
Sbjct: 498 TLSDPKYSGKMKVLQQLLNHFRKQRDKVLLFSFSTKLLDVLQQYCMA------------S 545
Query: 1012 GKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW 1071
G D+ RLDG T+S ER K+V+ FN ++ V L+ST AG LG+N AN VI+ D +W
Sbjct: 546 GLDYRRLDGSTKSEERLKIVKEFNS--SQDVNICLVSTMAGGLGLNFVGANVVILFDPTW 603
Query: 1072 NPTYDLQAIYRAWR---CMD 1088
NP DLQA+ RA+R C D
Sbjct: 604 NPANDLQAVDRAYRIGQCRD 623
>UNIPROTKB|F1PW14 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015616 "DNA translocase activity"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:AAEX03015957 Ensembl:ENSCAFT00000014598 Uniprot:F1PW14
Length = 912
Score = 251 (93.4 bits), Expect = 6.3e-40, Sum P(3) = 6.3e-40
Identities = 50/139 (35%), Positives = 84/139 (60%)
Query: 718 ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
+L+CDE H +KN+ TT AL + C++R+ LTG+P+QN+L E++ ++DFV G LGS
Sbjct: 428 LLICDEGHRLKNSAIKTTAALISLSCEKRVILTGTPVQNDLQEFFALIDFVNPGILGSLS 487
Query: 778 EFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKKDLPPKTVF 836
+R ++ PI + +++ E+ K+ +R+ + L G F+ R V+ K LPPK
Sbjct: 488 FYRKVYEEPIIISRQPSASEEEKKLGEKRA-VELTCLTGLFILRRTQEVINKYLPPKIEN 546
Query: 837 VITVKLSPLQRRLYKRFLD 855
V+ + LQ LY++ L+
Sbjct: 547 VVFCRPGALQIELYRKLLN 565
Score = 164 (62.8 bits), Expect = 6.3e-40, Sum P(3) = 6.3e-40
Identities = 42/129 (32%), Positives = 72/129 (55%)
Query: 959 SGKMVLLLDILTMCSNMG--DKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWY 1016
SGK+ +LL +L + + +K ++ S TLD+++ + K + G +
Sbjct: 642 SGKLQVLLKLLAVIHELRPTEKVVLVSNYTQTLDILQ-EVCK-----------RHGYTYT 689
Query: 1017 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1076
RLDG+T S+RQ++V+ FN + L+S++AG +G+NL + +I+ D WNP D
Sbjct: 690 RLDGQTPVSQRQQIVDSFNSKYSSDF-IFLLSSKAGGVGLNLIGGSHLILYDIDWNPATD 748
Query: 1077 LQAIYRAWR 1085
+QA+ R WR
Sbjct: 749 IQAMSRVWR 757
Score = 152 (58.6 bits), Expect = 6.3e-40, Sum P(3) = 6.3e-40
Identities = 48/140 (34%), Positives = 74/140 (52%)
Query: 566 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLG 625
L+ HQ GI F++E + +R +G G ILA MGLGKT Q I+ ++T G
Sbjct: 297 LRPHQKEGIMFLYE-CVMGMRV--NGR--CGAILADEMGLGKTLQCISLIWTLQCQGPYG 351
Query: 626 ----LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGG 681
++ LIVTP ++++NW++EF KW SE +++F V +D + E +
Sbjct: 352 GKPVVKKTLIVTPGSLVNNWRKEFQKWLGSER--IKIF---PVDQDHKVEEFTR-SPFYS 405
Query: 682 VFLIGYTAF-RNLSFGKHVK 700
V +I Y R+L K+VK
Sbjct: 406 VLIISYEMLLRSLDQIKNVK 425
>UNIPROTKB|F1NCD0 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 EMBL:AADN02013166
IPI:IPI00572933 Ensembl:ENSGALT00000006172 OMA:DYKEFVW
Uniprot:F1NCD0
Length = 560
Score = 286 (105.7 bits), Expect = 6.9e-40, Sum P(3) = 6.9e-40
Identities = 77/240 (32%), Positives = 119/240 (49%)
Query: 596 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKP 655
G ILA MGLGKT Q+IAFL + M L +R L++ P ++ +W EF +W P
Sbjct: 101 GGILADDMGLGKTIQIIAFL-SGMFDSEL-IRHVLLIMPTTLVSSWLAEFARWTPG---- 154
Query: 656 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 715
LRV S+ R L K + K G+ + Y N + +A CH
Sbjct: 155 LRVKEFHGTSKTERTRNLEKIQRKNGIVITSYQMLIN-------NWKQLAS--CHGQDFV 205
Query: 716 PDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-FLG 774
D ++ DEAH IK TT+ + + + R+ LTG+PLQNNL E + + DF +G LG
Sbjct: 206 WDYIILDEAHKIKCPSNKTTKCVYAIPAKHRLLLTGTPLQNNLQEMWSLFDFACQGSLLG 265
Query: 775 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT 834
++ FR ++NPI + ++T + + + S L +K + R + +KK+ K+
Sbjct: 266 TAKTFRMEYENPITRAREKDATVGEKALGLKISENLMTIIKPYFLRRTKDDIKKNHAEKS 325
Score = 200 (75.5 bits), Expect = 6.9e-40, Sum P(3) = 6.9e-40
Identities = 56/141 (39%), Positives = 78/141 (55%)
Query: 946 DLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQ 1005
D L + T + SGKM+ L+ +L G ++LVFSQS LD+IE LS +Q
Sbjct: 434 DHLSDETL--IQESGKMLFLVGLLGRLREEGHRTLVFSQSRKMLDIIERVLSS-----RQ 486
Query: 1006 GKLWKKGKDWYRLDGR-TESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRV 1064
K+ R+DG T +ER+K + F NK L++T+ G +GI L +ANRV
Sbjct: 487 FKIM-------RIDGTVTHLTEREKRINAFQS--NKDYSVFLLTTQVGGVGITLTAANRV 537
Query: 1065 IIVDGSWNPTYDLQAIYRAWR 1085
+I D SWNP D QA+ RA+R
Sbjct: 538 VIFDPSWNPATDAQAVDRAYR 558
Score = 152 (58.6 bits), Expect = 4.1e-25, Sum P(3) = 4.1e-25
Identities = 46/129 (35%), Positives = 63/129 (48%)
Query: 564 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVN 623
AKL HQ G+ F++ R + G G G ILA MGLGKT Q+IAFL + M
Sbjct: 78 AKLFQHQREGVAFLY-------RLHREGRPG-G-ILADDMGLGKTIQIIAFL-SGMFDSE 127
Query: 624 LGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVF 683
L +R L++ P ++ +W EF +W P LRV S+ R L K + K G+
Sbjct: 128 L-IRHVLLIMPTTLVSSWLAEFARWTPG----LRVKEFHGTSKTERTRNLEKIQRKNGIV 182
Query: 684 LIGYTAFRN 692
+ Y N
Sbjct: 183 ITSYQMLIN 191
Score = 65 (27.9 bits), Expect = 6.9e-40, Sum P(3) = 6.9e-40
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 826 VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNE-KIRKSFFAGYQALAQIW 884
V L K FV+ V L+P+Q ++Y+ FL L D V +S A L ++
Sbjct: 340 VMPSLTRKNDFVVWVYLAPVQEKIYRNFLCL-----DHVKEVLTTTRSPLAELTVLKKLC 394
Query: 885 NHPGIL 890
+HP +L
Sbjct: 395 DHPRLL 400
Score = 37 (18.1 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 1078 QAIYRAWRCMDKQSQFLLT 1096
+ IYR + C+D + L T
Sbjct: 361 EKIYRNFLCLDHVKEVLTT 379
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 328 (120.5 bits), Expect = 8.9e-40, Sum P(3) = 8.9e-40
Identities = 98/307 (31%), Positives = 156/307 (50%)
Query: 596 GCILAHTMGLGKTFQVIAFL----YTAMRS--VNL---GLRTALIVTPVNVLHNWKQEFM 646
G IL MGLGKT Q+IAFL Y+ +R+ N GL +IV P V+H W +EF
Sbjct: 522 GGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRYQGLGPTVIVCPATVMHQWVKEFH 581
Query: 647 KWRPSELKPLRVFMLEDVSR--DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNM 704
W P P RV +L + +++ +L+ + + G+ + Y+ R + H D
Sbjct: 582 TWWP----PFRVAILHETGSYTNKKVKLIREIASCHGILITSYSYIRLMQDNIHSYD--- 634
Query: 705 AREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCM 764
H ++ DE H I+N A T A KQ + RI L+GSP+QNNL E + +
Sbjct: 635 ----WH-------YVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLKELWSL 683
Query: 765 VDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV-QRMDM 823
DFV G LG+ F +F PI G ++N++ VK + + +L + + ++ +RM
Sbjct: 684 FDFVFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDAINPYLLRRMKA 743
Query: 824 NV-VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQ 882
+V + LP K V+ +L+ QR++Y+ F+D ++ N ++ F+G AL +
Sbjct: 744 DVKMSLSLPDKNEQVLFCRLTDEQRQVYQNFIDSKEVY--QILNGDMQ--VFSGLVALRK 799
Query: 883 IWNHPGI 889
I NHP +
Sbjct: 800 ICNHPDL 806
Score = 203 (76.5 bits), Expect = 8.9e-40, Sum P(3) = 8.9e-40
Identities = 48/132 (36%), Positives = 73/132 (55%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKM+++ +L + G + L F+QS L ++E +L + + R+
Sbjct: 834 SGKMIVVESLLKIWHKQGHRVLFFTQSRQMLQILEVFLRD------------RNYSYLRM 881
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T + RQ L+ R+NE +K + L++TR G +G+NL A+RVII D WNP+ D Q
Sbjct: 882 DGTTTIASRQPLITRYNE--DKSIFIFLLTTRVGGIGVNLTGADRVIIYDPDWNPSTDTQ 939
Query: 1079 AIYRAWRCMDKQ 1090
A RAWR K+
Sbjct: 940 ARERAWRIGQKK 951
Score = 166 (63.5 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 50/160 (31%), Positives = 77/160 (48%)
Query: 553 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVI 612
EE ++P + KL +Q G+R++WE Q G IL MGLGKT Q+I
Sbjct: 489 EEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQA----------GGILGDEMGLGKTIQII 538
Query: 613 AFL----YTAMRS--VNL---GLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLED 663
AFL Y+ +R+ N GL +IV P V+H W +EF W P P RV +L +
Sbjct: 539 AFLAGLSYSKIRTRGSNYRYQGLGPTVIVCPATVMHQWVKEFHTWWP----PFRVAILHE 594
Query: 664 VSR--DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKD 701
+++ +L+ + + G+ + Y+ R + H D
Sbjct: 595 TGSYTNKKVKLIREIASCHGILITSYSYIRLMQDNIHSYD 634
Score = 47 (21.6 bits), Expect = 2.6e-10, Sum P(3) = 2.6e-10
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 641 WKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVF 683
+KQ KW+ LK + E++S + E ++ G +F
Sbjct: 457 YKQRLRKWQRERLKDKERSVAEELSDESDTEFEEGFKVPGFLF 499
Score = 43 (20.2 bits), Expect = 9.2e-11, Sum P(2) = 9.2e-11
Identities = 14/60 (23%), Positives = 29/60 (48%)
Query: 535 VLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQS--IRKVKSGD 592
VL DAI Y++ ++ + ++ +P L R +++N I S + ++ +GD
Sbjct: 728 VLRDAINPYLLRRMKADVKMSLSLPDKNEQVLFCRLTDEQRQVYQNFIDSKEVYQILNGD 787
Score = 40 (19.1 bits), Expect = 8.9e-40, Sum P(3) = 8.9e-40
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 583 QSIRKVKSGDKGLGCILAHTMGLGKTFQV 611
Q ++K+K+ K L +L T L K ++
Sbjct: 186 QQLKKIKAKQKRLQAVLGGTEILDKVNEI 214
Score = 40 (19.1 bits), Expect = 7.0e-23, Sum P(3) = 7.0e-23
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 1018 LDGRTESSERQKLVERFNEPLNKRVK--CTLISTRAGS 1053
L G SSE K+ E +E N+ + +L+ AGS
Sbjct: 1129 LPGGAGSSENAKVTEEEHEVANENAEGDFSLLCGAAGS 1166
>UNIPROTKB|F1MSA4 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
UniGene:Bt.91076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 CTD:25788 KO:K10877 GO:GO:0015616
OMA:VCKRHGY EMBL:DAAA02039467 EMBL:DAAA02039466 IPI:IPI00825462
RefSeq:NP_001179884.1 Ensembl:ENSBTAT00000000833 GeneID:533414
KEGG:bta:533414 NextBio:20876031 Uniprot:F1MSA4
Length = 909
Score = 256 (95.2 bits), Expect = 9.4e-40, Sum P(3) = 9.4e-40
Identities = 59/175 (33%), Positives = 96/175 (54%)
Query: 717 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 776
D+L+CDE H +KN+ TT AL + C++RI LTG+P+QN+L E++ ++DFV G LGS
Sbjct: 426 DLLICDEGHRLKNSTIKTTTALISLSCEKRIILTGTPVQNDLQEFFTLIDFVNPGILGSL 485
Query: 777 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKKDLPPKTV 835
+R ++ PI + +++ E+ ++ QR+ L L G F+ R V+ + LPPK
Sbjct: 486 SAYRKIYEEPIIISRQPSASEEERELGEQRAAEL-TCLTGLFILRRTQEVINQYLPPKIE 544
Query: 836 FVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 890
V+ + LQ LY++ L+ + S AL ++ NHP +L
Sbjct: 545 NVVFCRPGALQIALYRKLLNSQA-VRFCLQGLLENTSHLICIGALKKLCNHPCLL 598
Score = 157 (60.3 bits), Expect = 9.4e-40, Sum P(3) = 9.4e-40
Identities = 41/129 (31%), Positives = 71/129 (55%)
Query: 959 SGKMVLLLDILTMCSNM--GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWY 1016
SGK+ +L +L + + +K ++ S TLD+++ + K + G +
Sbjct: 641 SGKLQVLSKLLAVIRELRPAEKVVLVSNYTRTLDILQ-EVCK-----------RHGYAYT 688
Query: 1017 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1076
RLDG+T S+RQ++V+ FN + L+S++AG +G+NL + +I+ D WNP D
Sbjct: 689 RLDGQTPISQRQQIVDGFNSKYSSDF-IFLLSSKAGGVGLNLIGGSHLILYDIDWNPATD 747
Query: 1077 LQAIYRAWR 1085
+QA+ R WR
Sbjct: 748 IQAMSRVWR 756
Score = 152 (58.6 bits), Expect = 9.4e-40, Sum P(3) = 9.4e-40
Identities = 49/140 (35%), Positives = 73/140 (52%)
Query: 566 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLG 625
L+ HQ GI F++E + +R +G G ILA MGLGKT Q I+ ++T G
Sbjct: 296 LRPHQKEGITFLYE-CVMGMRV--NGR--CGAILADEMGLGKTLQCISLIWTLQCQGPYG 350
Query: 626 ----LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGG 681
++ LIVTP ++++NWK+EF KW E +++F V +D + E K
Sbjct: 351 GKPIVKKTLIVTPGSLVNNWKKEFQKWLGIER--IKIFT---VDQDHKVEEFTK-SPFYS 404
Query: 682 VFLIGYTAF-RNLSFGKHVK 700
V +I Y R+L K+VK
Sbjct: 405 VLIISYEMLLRSLDQIKNVK 424
Score = 45 (20.9 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 899 PSRXXXXXXXXXXNMDYNVVIGEKPRNMNDFLQGKND 935
P+R ++ ++ + E N N+FLQ +ND
Sbjct: 23 PARSHPSPNEEVAKLNSDIKLFEVAANKNNFLQPQND 59
>ASPGD|ASPL0000068126 [details] [associations]
symbol:cshA species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001304
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000119 HOGENOM:HOG000170952 KO:K10841
OrthoDB:EOG44TSGZ RefSeq:XP_664707.1 ProteinModelPortal:Q5AX77
STRING:Q5AX77 EnsemblFungi:CADANIAT00000362 GeneID:2869817
KEGG:ani:AN7103.2 OMA:HSALEHD Uniprot:Q5AX77
Length = 1193
Score = 312 (114.9 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 102/350 (29%), Positives = 161/350 (46%)
Query: 553 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVI 612
+ RIP I L +Q G+++MWE Q + G I+ MGLGKT Q I
Sbjct: 385 DNGYRIPGDIHPLLFDYQKTGVQWMWELHQQQV----------GGIIGDEMGLGKTIQAI 434
Query: 613 AFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP----SELKPLRVFMLEDVSRDR 668
AFL S L + ++V P V+ W EF +W P S L M+ S
Sbjct: 435 AFLAGLHYSKRL-TKPIIVVCPATVMKQWVNEFHRWWPPFRVSILHTSGSGMVNIKSESS 493
Query: 669 RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV-------- 720
R + L G G A R + + V++ ++ LQ +L+
Sbjct: 494 REDALMYGTYWSGGSSSGLKAARKV-VKRVVEEGHVLVTTYSGLQSYASLLIPVEWGGTI 552
Query: 721 CDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFR 780
DE H I+N T K+++ RI L+G+P+QNNL E + + DFV LG+ FR
Sbjct: 553 LDEGHKIRNPNTSITMHAKELRTPHRIILSGTPMQNNLTELWSLFDFVFPMRLGTLVNFR 612
Query: 781 NRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV-QRMDMNVVKKDLPPKTVFVIT 839
N+F+ PI G + N+++ V+ + + L + + ++ QR ++V DLP K+ V+
Sbjct: 613 NQFEFPIRQGGYANASNLQVQTAAKCAETLKDAISPYLLQRFKIDVAA-DLPKKSEQVLF 671
Query: 840 VKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGI 889
+L+ QR+ Y+ FL + + S + R+ G L +I NHP +
Sbjct: 672 CRLTKPQRQAYEAFLG----SEEMQSILRGRRQVLYGVDILRKICNHPDL 717
Score = 204 (76.9 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 49/132 (37%), Positives = 75/132 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKM ++ +L + G K+L+F+Q LD++E ++ L G ++ R+
Sbjct: 735 SGKMQVVRSLLELWKETGHKTLLFAQHRIMLDILEKFVKSL-----------SGFNYRRM 783
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T RQ +V+ FN+ + V L++T+ G LG+NL A+RVII D WNP+ D+Q
Sbjct: 784 DGTTPIQHRQTMVDEFNKDPDLHV--FLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDVQ 841
Query: 1079 AIYRAWRCMDKQ 1090
A RAWR K+
Sbjct: 842 ARERAWRLGQKR 853
>UNIPROTKB|F1RY50 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:CU633951 Ensembl:ENSSSCT00000006692 Uniprot:F1RY50
Length = 805
Score = 259 (96.2 bits), Expect = 1.6e-39, Sum P(3) = 1.6e-39
Identities = 61/182 (33%), Positives = 99/182 (54%)
Query: 717 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 776
D+L+CDE H +KN+ TT AL + C++RI LTG+P+QN+L E++ ++DFV G LGS
Sbjct: 322 DLLICDEGHRLKNSAIKTTTALFSLPCEKRIILTGTPVQNDLQEFFSLIDFVNPGILGSL 381
Query: 777 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKKDLPPKTV 835
+R ++ PI + +++ E+ ++ +R+ L L G F+ R V+ K LPPK
Sbjct: 382 SCYRKIYEEPIITSRQPSASQEEKELGERRACEL-TCLTGLFILRRTQEVINKYLPPKIE 440
Query: 836 FVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL-QLTK 894
V+ + LQ LY++ L+ + S AL ++ NHP +L K
Sbjct: 441 NVVFCRPGALQIELYRKLLNSQA-VRFCLQGLMENSSHLICIGALKKLCNHPCLLFSSVK 499
Query: 895 DK 896
+K
Sbjct: 500 EK 501
Score = 151 (58.2 bits), Expect = 1.6e-39, Sum P(3) = 1.6e-39
Identities = 40/129 (31%), Positives = 71/129 (55%)
Query: 959 SGKMVLLLDILTMCSNM--GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWY 1016
SGK+ +L +L + + +K ++ S TL++++ ++ R + G
Sbjct: 537 SGKLQVLSKLLAVIHELRPAEKVVLVSNYTQTLNILQ----EVCR--------RHGYGCT 584
Query: 1017 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1076
RLDG+T S+RQ++V+ FN + L+S++AG +G+NL + +I+ D WNP D
Sbjct: 585 RLDGQTPISQRQQIVDGFNSKYSSDF-IFLLSSKAGGVGLNLIGGSHLILYDIDWNPATD 643
Query: 1077 LQAIYRAWR 1085
+QA+ R WR
Sbjct: 644 IQAMSRVWR 652
Score = 150 (57.9 bits), Expect = 1.6e-39, Sum P(3) = 1.6e-39
Identities = 47/140 (33%), Positives = 74/140 (52%)
Query: 566 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLG 625
L+ HQ GI F++E + +R +G G ILA MGLGKT Q I+ ++T G
Sbjct: 192 LRPHQREGIIFLYE-CVMGMRV--NGR--CGAILADEMGLGKTLQCISLIWTLQCQGPYG 246
Query: 626 ----LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGG 681
++ LIVTP ++++NW++EF KW SE +++F ++ D + E K
Sbjct: 247 GKPVIKKTLIVTPGSLVNNWRKEFQKWLGSER--IKIFTVDP---DHKVEEFTK-SPLYS 300
Query: 682 VFLIGYTAF-RNLSFGKHVK 700
V +I Y R+L K++K
Sbjct: 301 VLIISYEMLLRSLDQIKNIK 320
>UNIPROTKB|Q5T890 [details] [associations]
symbol:RAD26L "Putative DNA repair and recombination
protein RAD26-like" species:9606 "Homo sapiens" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005815
"microtubule organizing center" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006281
GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH471174 EMBL:AL161454
EMBL:BC035183 EMBL:BC140702 EMBL:AL389953 IPI:IPI00641648
IPI:IPI00873984 RefSeq:NP_001010895.1 UniGene:Hs.432364
UniGene:Hs.732570 ProteinModelPortal:Q5T890 SMR:Q5T890
IntAct:Q5T890 PhosphoSite:Q5T890 DMDM:74756405 PRIDE:Q5T890
DNASU:375748 Ensembl:ENST00000288985 Ensembl:ENST00000426805
Ensembl:ENST00000437817 GeneID:375748 KEGG:hsa:375748
UCSC:uc004avt.4 UCSC:uc010mrz.3 CTD:375748 HGNC:HGNC:26922
neXtProt:NX_Q5T890 PharmGKB:PA134961240 HOGENOM:HOG000074171
HOVERGEN:HBG108393 InParanoid:Q5T890 OMA:HGNRKDN OrthoDB:EOG41G33K
ChiTaRS:ERCC6L2 GenomeRNAi:375748 NextBio:100596
ArrayExpress:Q5T890 Bgee:Q5T890 CleanEx:HS_C9orf102
Genevestigator:Q5T890 Uniprot:Q5T890
Length = 712
Score = 282 (104.3 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 93/321 (28%), Positives = 150/321 (46%)
Query: 558 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 617
IP +I+ L+ +Q G RF++ + I G GCIL MGLGKT QVI+FL
Sbjct: 126 IPYTINRYLRDYQREGTRFLYGHYIH----------GGGCILGDDMGLGKTVQVISFLAA 175
Query: 618 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWR 677
+ G R + N + + MK P ++F++ V+ +L W+
Sbjct: 176 VLHKK--GTREDI----ENNMPEFLLRSMKKEPLSSTAKKMFLI--VAP---LSVLYNWK 224
Query: 678 AKGGVFLIGYTAFRNLSFGKHVKDRNMAR---EICH-ALQDGPDILVC------------ 721
+ + GY FR + KD + R C AL + +C
Sbjct: 225 DELDTW--GY--FRVTVLHGNRKDNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAV 280
Query: 722 --DEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 779
DEAH IKN +A T+ +K +KC RI LTG+ LQNN+ E +C++D+ G LGS F
Sbjct: 281 IVDEAHRIKNPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYF 340
Query: 780 RNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVIT 839
+ +F +P+E+GQ +T ++ + L +++ G+ R ++K LP K ++
Sbjct: 341 KKQFSDPVEHGQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVY 400
Query: 840 VKLSPLQRRLYKRFLDLHGFT 860
L+ Q+ +Y+ L+ T
Sbjct: 401 CSLTDFQKAVYQTVLETEDVT 421
Score = 226 (84.6 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 58/140 (41%), Positives = 77/140 (55%)
Query: 952 TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKK 1011
T + YSGKM +L +L C DK L+FS S LD+++ Y
Sbjct: 511 TLSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCMA------------S 558
Query: 1012 GKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW 1071
G D+ RLDG T+S ER K+V+ FN + + C L+ST AG LG+N AN V++ D +W
Sbjct: 559 GLDYRRLDGSTKSEERLKIVKEFNSTQDVNI-C-LVSTMAGGLGLNFVGANVVVLFDPTW 616
Query: 1072 NPTYDLQAIYRAWR---CMD 1088
NP DLQAI RA+R C D
Sbjct: 617 NPANDLQAIDRAYRIGQCRD 636
>TAIR|locus:2024198 [details] [associations]
symbol:SWI2 "switch 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016020 "membrane"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0016020 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HGNRKDN
IPI:IPI00529418 RefSeq:NP_171871.2 UniGene:At.42525
UniGene:At.42526 ProteinModelPortal:F4I2H2 SMR:F4I2H2 PRIDE:F4I2H2
EnsemblPlants:AT1G03750.1 GeneID:839417 KEGG:ath:AT1G03750
Uniprot:F4I2H2
Length = 862
Score = 228 (85.3 bits), Expect = 3.4e-39, Sum P(4) = 3.4e-39
Identities = 57/136 (41%), Positives = 84/136 (61%)
Query: 955 ELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKD 1014
++ + GKM L ++ + GDK L+FS S+ LD++E +L + KG
Sbjct: 523 DVKHCGKMRALEKLMASWISKGDKILLFSYSVRMLDILEKFLIR------------KGYS 570
Query: 1015 WYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPT 1074
+ RLDG T ++ RQ LV+ FN +K+V LIST+AG LG+NL SANRV+I D +WNP+
Sbjct: 571 FARLDGSTPTNLRQSLVDDFNASPSKQV--FLISTKAGGLGLNLVSANRVVIFDPNWNPS 628
Query: 1075 YDLQAIYRAWRCMDKQ 1090
+DLQA R++R K+
Sbjct: 629 HDLQAQDRSFRYGQKR 644
Score = 199 (75.1 bits), Expect = 3.4e-39, Sum P(4) = 3.4e-39
Identities = 42/141 (29%), Positives = 81/141 (57%)
Query: 717 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 776
+I++ DEAH +KN ++ +A ++K ++RI LTG+ +QN + E + + ++V G LG+
Sbjct: 269 EIVIADEAHRLKNEKSKLYEACLEIKTKKRIGLTGTVMQNKISELFNLFEWVAPGSLGTR 328
Query: 777 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV-QRMDMNVVKKDLPPKTV 835
FR+ + P++ GQ + V+I ++R L L+ ++ +R + + K
Sbjct: 329 EHFRDFYDEPLKLGQRATAPERFVQIADKRKQHLGSLLRKYMLRRTKEETIGHLMMGKED 388
Query: 836 FVITVKLSPLQRRLYKRFLDL 856
V+ ++S LQRR+Y+R + L
Sbjct: 389 NVVFCQMSQLQRRVYQRMIQL 409
Score = 139 (54.0 bits), Expect = 3.4e-39, Sum P(4) = 3.4e-39
Identities = 45/146 (30%), Positives = 73/146 (50%)
Query: 556 VRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL 615
+ +P+SI+ +L HQ G++FM+ N+ ++ G IL MGLGKT Q IAFL
Sbjct: 129 IHVPASINCRLLEHQREGVKFMY-NLYKNNH---------GGILGDDMGLGKTIQTIAFL 178
Query: 616 YTAM-RSVNLG----LRT----ALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSR 666
+ + G L + LI+ P +++HNW+ EF +W +V + +R
Sbjct: 179 AAVYGKDGDAGESCLLESDKGPVLIICPSSIIHNWESEFSRWASF----FKVSVYHGSNR 234
Query: 667 DRRAELLAKWRAKG-GVFLIGYTAFR 691
D +L K +A+G V + + FR
Sbjct: 235 DM---ILEKLKARGVEVLVTSFDTFR 257
Score = 42 (19.8 bits), Expect = 2.8e-13, Sum P(3) = 2.8e-13
Identities = 29/139 (20%), Positives = 52/139 (37%)
Query: 304 KLEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPIL----NVIVCKDC 359
KL + +PE A H SL K+ I H ++ NV+ C+
Sbjct: 340 KLGQRATAPERFVQIADKRKQHLGSLLRKYMLRRTKEETIG---HLMMGKEDNVVFCQMS 396
Query: 360 KCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEAC----LSDE 415
+ L+++++ + E C+ + +C S L + C +R + + L +
Sbjct: 397 Q--LQRRVYQRMIQLPEIQCLV--NKDNPCACGS--PLKQSECCRRIVPDGTIWSYLHRD 450
Query: 416 VQASCWQC--CCCSPSLLK 432
C C C P L+K
Sbjct: 451 NHDGCDSCPFCLVLPCLMK 469
Score = 39 (18.8 bits), Expect = 3.4e-39, Sum P(4) = 3.4e-39
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 118 SVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKF 154
S ++ED D N DD + +E+E+ +E+ +F
Sbjct: 64 SKTQVEDFDHNEDD-HKRNIKFDEEEVDEDDERSIEF 99
>UNIPROTKB|E2RGN3 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:AAEX03000489 Ensembl:ENSCAFT00000001890 Uniprot:E2RGN3
Length = 925
Score = 291 (107.5 bits), Expect = 3.0e-38, Sum P(3) = 3.0e-38
Identities = 94/321 (29%), Positives = 150/321 (46%)
Query: 558 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 617
IP +I+ L+ +Q G +F++ + IQ G GCIL MGLGKT QVI+FL
Sbjct: 53 IPYTINRYLRDYQREGAQFLYAHFIQ----------GKGCILGDDMGLGKTVQVISFLAA 102
Query: 618 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWR 677
+ G R + N + + MK P ++F++ V+ +L WR
Sbjct: 103 VLHKK--GTREDI----ENNMPEFLLRSMKKEPPSSTAKKMFLI--VAP---LSVLYNWR 151
Query: 678 AKGGVFLIGYTAFRNLSFGKHVKDRNMAR---EICH-ALQDGPDILVC------------ 721
+ + GY FR + KD + R C AL + +C
Sbjct: 152 DELDTW--GY--FRVTILHGNKKDNELVRVKQRKCEIALTTYETLRLCLDELNSLEWSAV 207
Query: 722 --DEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 779
DEAH IKN +A T+ +K +KC RI LTG+ LQNN+ E +C++D+ G LGS F
Sbjct: 208 IVDEAHKIKNPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSRIHF 267
Query: 780 RNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVIT 839
+ +F +P+E+GQ +T ++ + L + + G+ R ++K LP K ++
Sbjct: 268 KKQFSDPVEHGQRHTATKRELATGRKAMQRLAKMMSGWFLRRTKTLIKDQLPKKEDRMVY 327
Query: 840 VKLSPLQRRLYKRFLDLHGFT 860
L+ Q+ +Y+ L+ T
Sbjct: 328 CSLTDFQKAVYQTVLETKDVT 348
Score = 220 (82.5 bits), Expect = 3.0e-38, Sum P(3) = 3.0e-38
Identities = 57/140 (40%), Positives = 77/140 (55%)
Query: 952 TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKK 1011
T + YSGKM +L +L C DK L+FS S LD+++ Y
Sbjct: 438 TLSDPKYSGKMKVLQQLLNHCRKNKDKILLFSFSTKLLDVLQQYCMAA------------ 485
Query: 1012 GKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW 1071
G D+ RLDG T+S ER K+V+ FN + + C L+ST AG +G+N AN V++ D +W
Sbjct: 486 GFDYRRLDGSTKSEERIKIVKEFNSTQDVNI-C-LVSTMAGGVGLNFVGANVVVLFDPTW 543
Query: 1072 NPTYDLQAIYRAWR---CMD 1088
NP DLQAI RA+R C D
Sbjct: 544 NPANDLQAIDRAYRIGQCRD 563
Score = 38 (18.4 bits), Expect = 3.0e-38, Sum P(3) = 3.0e-38
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 867 EKIRKSFFAGYQALAQIWNHPGILQ 891
E ++ +F+ L ++ NH +LQ
Sbjct: 377 ETVKTLYFSYLAVLQKVANHVALLQ 401
>UNIPROTKB|F1PQX1 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:AAEX03000489 Ensembl:ENSCAFT00000001906 OMA:QSSQPCT
Uniprot:F1PQX1
Length = 995
Score = 291 (107.5 bits), Expect = 4.3e-38, Sum P(3) = 4.3e-38
Identities = 94/321 (29%), Positives = 150/321 (46%)
Query: 558 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 617
IP +I+ L+ +Q G +F++ + IQ G GCIL MGLGKT QVI+FL
Sbjct: 115 IPYTINRYLRDYQREGAQFLYAHFIQ----------GKGCILGDDMGLGKTVQVISFLAA 164
Query: 618 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWR 677
+ G R + N + + MK P ++F++ V+ +L WR
Sbjct: 165 VLHKK--GTREDI----ENNMPEFLLRSMKKEPPSSTAKKMFLI--VAP---LSVLYNWR 213
Query: 678 AKGGVFLIGYTAFRNLSFGKHVKDRNMAR---EICH-ALQDGPDILVC------------ 721
+ + GY FR + KD + R C AL + +C
Sbjct: 214 DELDTW--GY--FRVTILHGNKKDNELVRVKQRKCEIALTTYETLRLCLDELNSLEWSAV 269
Query: 722 --DEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 779
DEAH IKN +A T+ +K +KC RI LTG+ LQNN+ E +C++D+ G LGS F
Sbjct: 270 IVDEAHKIKNPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSRIHF 329
Query: 780 RNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVIT 839
+ +F +P+E+GQ +T ++ + L + + G+ R ++K LP K ++
Sbjct: 330 KKQFSDPVEHGQRHTATKRELATGRKAMQRLAKMMSGWFLRRTKTLIKDQLPKKEDRMVY 389
Query: 840 VKLSPLQRRLYKRFLDLHGFT 860
L+ Q+ +Y+ L+ T
Sbjct: 390 CSLTDFQKAVYQTVLETKDVT 410
Score = 220 (82.5 bits), Expect = 4.3e-38, Sum P(3) = 4.3e-38
Identities = 57/140 (40%), Positives = 77/140 (55%)
Query: 952 TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKK 1011
T + YSGKM +L +L C DK L+FS S LD+++ Y
Sbjct: 500 TLSDPKYSGKMKVLQQLLNHCRKNKDKILLFSFSTKLLDVLQQYCMAA------------ 547
Query: 1012 GKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW 1071
G D+ RLDG T+S ER K+V+ FN + + C L+ST AG +G+N AN V++ D +W
Sbjct: 548 GFDYRRLDGSTKSEERIKIVKEFNSTQDVNI-C-LVSTMAGGVGLNFVGANVVVLFDPTW 605
Query: 1072 NPTYDLQAIYRAWR---CMD 1088
NP DLQAI RA+R C D
Sbjct: 606 NPANDLQAIDRAYRIGQCRD 625
Score = 38 (18.4 bits), Expect = 4.3e-38, Sum P(3) = 4.3e-38
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 867 EKIRKSFFAGYQALAQIWNHPGILQ 891
E ++ +F+ L ++ NH +LQ
Sbjct: 439 ETVKTLYFSYLAVLQKVANHVALLQ 463
>CGD|CAL0004359 [details] [associations]
symbol:RDH54 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0015616 "DNA translocase activity" evidence=IEA] [GO:0032392
"DNA geometric change" evidence=IEA] [GO:0045144 "meiotic sister
chromatid segregation" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IEA] [GO:0030491 "heteroduplex
formation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004359 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000059 EMBL:AACQ01000058 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10877
RefSeq:XP_717090.1 RefSeq:XP_717169.1 ProteinModelPortal:Q5A5N2
STRING:Q5A5N2 GeneID:3641231 GeneID:3641299 KEGG:cal:CaO19.12827
KEGG:cal:CaO19.5367 Uniprot:Q5A5N2
Length = 796
Score = 311 (114.5 bits), Expect = 4.6e-38, Sum P(2) = 4.6e-38
Identities = 88/310 (28%), Positives = 147/310 (47%)
Query: 556 VRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL 615
V I ++ L+ HQV G++FM+E + R G G GC+LA MGLGKT I +
Sbjct: 185 VNIDPHLAKVLRPHQVEGVKFMYE-CLMGYR----GFGGHGCLLADEMGLGKTLMTITTI 239
Query: 616 YTAMRS---VNLG--LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRA 670
+T ++ + G + L+V PV ++ NW+QEF KW + L V L + + +
Sbjct: 240 WTLLKQNPFMEKGAVVNKVLVVCPVTLISNWRQEFRKWLGAN--KLNVLTLNNPMSNEKQ 297
Query: 671 ELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNT 730
++L K V+ + + L H + + + D+LVCDE H +KN+
Sbjct: 298 DILNF--GKLNVYQVLVVNYEKLV--AHFDELSAVKF---------DLLVCDEGHRLKNS 344
Query: 731 RADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENG 790
L ++ ++I LTG+P+QN L+E++ ++ F+ G L F+ F PI
Sbjct: 345 ANKVLNNLIKLNIPKKIVLTGTPIQNELVEFHTLISFLNPGVLPELKLFQRNFITPISRA 404
Query: 791 QHTNSTSEDVKIMNQR-SHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRL 849
+ N +VK + S L E + F+ R ++ L KT ++ V + LQ +L
Sbjct: 405 RDINCFDPEVKKRGEEISQQLIELTQSFILRRTQAILANYLTQKTDILLFVPPTSLQLKL 464
Query: 850 YKRFLDLHGF 859
+ +L F
Sbjct: 465 FDYITNLKKF 474
Score = 185 (70.2 bits), Expect = 4.6e-38, Sum P(2) = 4.6e-38
Identities = 46/127 (36%), Positives = 73/127 (57%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK+ +L+ +L +++G+K ++ S TLDL+E L K+ + RL
Sbjct: 516 SGKINILVPLLLEIASLGEKIVLISNYTKTLDLLEQVLRKV------------SLTFSRL 563
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T ++ R KLV +FN N + L+S+++G +GINL A+R+I+ D WNP DLQ
Sbjct: 564 DGSTPNNVRSKLVNQFNT--NPDINVFLLSSKSGGMGINLVGASRLILFDNDWNPATDLQ 621
Query: 1079 AIYRAWR 1085
++ R R
Sbjct: 622 SMSRIHR 628
>UNIPROTKB|F1S4L1 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 OMA:HGNRKDN EMBL:CU855584
Ensembl:ENSSSCT00000011974 Uniprot:F1S4L1
Length = 928
Score = 233 (87.1 bits), Expect = 8.7e-38, Sum P(5) = 8.7e-38
Identities = 46/137 (33%), Positives = 78/137 (56%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
++ DEAH IKN +A T+ +K +KC RI LTG+ LQNN+ E +C++D+ G LGS
Sbjct: 203 VIVDEAHRIKNPKARITEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSEIH 262
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F+ F +P+E+GQ +T ++ + L ++ G+ R ++K LP K ++
Sbjct: 263 FKKHFSDPVEHGQRHTATKRELATGRKAMQRLAIKMSGWFLRRTKILIKDQLPKKEDRMV 322
Query: 839 TVKLSPLQRRLYKRFLD 855
L+ Q+ +Y+ L+
Sbjct: 323 YCSLTDFQKAVYQTVLE 339
Score = 225 (84.3 bits), Expect = 8.7e-38, Sum P(5) = 8.7e-38
Identities = 58/140 (41%), Positives = 77/140 (55%)
Query: 952 TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKK 1011
T + YSGKM +L +L C DK L+FS S LD+++ Y
Sbjct: 434 TLSDPKYSGKMKVLQQLLNHCRKNKDKVLLFSFSTKLLDVLQQYCMA------------S 481
Query: 1012 GKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW 1071
G D+ RLDG T+S ER K+V+ FN + + C L+ST AG LG+N AN V++ D +W
Sbjct: 482 GLDYRRLDGSTKSEERIKIVKEFNSTQDVNI-C-LVSTMAGGLGLNFVGANVVVLFDPTW 539
Query: 1072 NPTYDLQAIYRAWR---CMD 1088
NP DLQAI RA+R C D
Sbjct: 540 NPANDLQAIDRAYRIGQCRD 559
Score = 101 (40.6 bits), Expect = 8.7e-38, Sum P(5) = 8.7e-38
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 547 VVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLG 606
V + E+ IP +I+ L+ +Q G +F++ + IQ G GCIL MGLG
Sbjct: 42 VAFQLSEDGASIPYTINRYLRDYQREGAQFLYGHFIQ----------GRGCILGDDMGLG 91
Query: 607 KTFQVIAFL 615
KT QVI+FL
Sbjct: 92 KTVQVISFL 100
Score = 39 (18.8 bits), Expect = 8.7e-38, Sum P(5) = 8.7e-38
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 867 EKIRKSFFAGYQALAQIWNHPGILQ 891
E ++ +F+ L ++ NH +LQ
Sbjct: 373 ESVKTLYFSYLAVLQKVANHVALLQ 397
Score = 37 (18.1 bits), Expect = 8.7e-38, Sum P(5) = 8.7e-38
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 140 NEKELALSEEQRKKFRKVKEEDD 162
NEK L EE++ ++++E++D
Sbjct: 7 NEK---LCEERKVPLKRLQEDED 26
>SGD|S000000277 [details] [associations]
symbol:RDH54 "DNA-dependent ATPase" species:4932
"Saccharomyces cerevisiae" [GO:0007131 "reciprocal meiotic
recombination" evidence=IGI;IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000727 "double-strand break repair via
break-induced replication" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA;IC] [GO:0030491 "heteroduplex formation" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0045144 "meiotic sister chromatid segregation" evidence=IMP]
[GO:0015616 "DNA translocase activity" evidence=IDA] [GO:0032392
"DNA geometric change" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000000277 GO:GO:0005524
GO:GO:0005634 EMBL:BK006936 GO:GO:0004386 EMBL:X76294
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0007131 GO:GO:0045144 InterPro:IPR018838 Pfam:PF10382
GO:GO:0000727 KO:K10877 GO:GO:0015616 GO:GO:0032392
HOGENOM:HOG000204521 GO:GO:0030491 OrthoDB:EOG4CVKG1 EMBL:Z35942
PIR:S45466 RefSeq:NP_009629.6 RefSeq:NP_009633.3
ProteinModelPortal:P38086 SMR:P38086 DIP:DIP-792N IntAct:P38086
MINT:MINT-566887 STRING:P38086 PaxDb:P38086 PeptideAtlas:P38086
EnsemblFungi:YBR073W GeneID:852365 GeneID:852369 KEGG:sce:YBR073W
KEGG:sce:YBR077C CYGD:YBR073w GeneTree:ENSGT00700000105778
OMA:AMSRIHR NextBio:971140 Genevestigator:P38086 GermOnline:YBR073W
GO:GO:0003916 Uniprot:P38086
Length = 958
Score = 308 (113.5 bits), Expect = 1.5e-37, Sum P(3) = 1.5e-37
Identities = 96/315 (30%), Positives = 155/315 (49%)
Query: 596 GCILAHTMGLGKTFQVIAFLYTAMRSVNL--------------GL-RTALIVTPVNVLHN 640
GC+LA MGLGKT I ++T +R GL + L+V PV ++ N
Sbjct: 341 GCLLADDMGLGKTLMSITLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGN 400
Query: 641 WKQEFMKW-RPSELKPLRVFMLEDVSRDRRA-ELLAKWRAKGGVFLIGYTAFRNLSFGKH 698
WK+EF KW S + L + D+ A K + V +IGY LS +
Sbjct: 401 WKREFGKWLNLSRIGVLTLSSRNSPDMDKMAVRNFLKVQRTYQVLIIGYEKL--LSVSEE 458
Query: 699 VKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNL 758
+ ++N H + D+LVCDE H +KN + LK + +R++ LTG+P+QN+L
Sbjct: 459 L-EKNK-----HLI----DMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDL 508
Query: 759 MEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHT-NSTSEDV-KIMNQRSHILYEQLKG 816
E++ ++DF+ G LGS F+ RF PI + T N +E++ + +RS + E K
Sbjct: 509 NEFFTIIDFINPGILGSFASFKRRFIIPITRARDTANRYNEELLEKGEERSKEMIEITKR 568
Query: 817 FVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAG 876
F+ R +++K LPPKT ++ K P +++ F D+ R+ ++ S G
Sbjct: 569 FILRRTNAILEKYLPPKTDIILFCK--PYSQQILA-FKDI--LQGARLDFGQLTFSSSLG 623
Query: 877 Y-QALAQIWNHPGIL 890
L ++ N PG++
Sbjct: 624 LITLLKKVCNSPGLV 638
Score = 159 (61.0 bits), Expect = 1.5e-37, Sum P(3) = 1.5e-37
Identities = 47/157 (29%), Positives = 76/157 (48%)
Query: 939 FQKDWWNDLLHEHTYKELDYSGKMVLLLDILT-MCSNMGDKSLVFSQSIPTLDLIEFYLS 997
+ K D + +Y SGK+ +L+ +L + +K +V S TLD+IE ++
Sbjct: 643 YYKSHIKDTQSQDSYSRSLNSGKLKVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMN 702
Query: 998 KLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGIN 1057
G RLDG + +R +V FN N + L+S ++G +G+N
Sbjct: 703 MA------------GMSHCRLDGSIPAKQRDSIVTSFNR--NPAIFGFLLSAKSGGVGLN 748
Query: 1058 LHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFL 1094
L A+R+I+ D WNP+ DLQA+ R R K+ F+
Sbjct: 749 LVGASRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFI 785
Score = 75 (31.5 bits), Expect = 1.5e-37, Sum P(3) = 1.5e-37
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 566 LKAHQVVGIRFMWENIIQSIRK-VKSGD-----KGL---------GCILAHTMGLGKTFQ 610
L+ HQ G++FM++ ++ R +++ D K L GC+LA MGLGKT
Sbjct: 296 LRPHQREGVKFMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLM 355
Query: 611 VIAFLYTAMR 620
I ++T +R
Sbjct: 356 SITLIWTLIR 365
Score = 38 (18.4 bits), Expect = 5.2e-25, Sum P(3) = 5.2e-25
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 931 QGKNDDGFFQKDWWNDLLHEHT 952
+ NDD F K+ DL HT
Sbjct: 822 ESSNDD-LFNKEDLKDLFSVHT 842
>UNIPROTKB|G5E5P9 [details] [associations]
symbol:LOC789977 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 OMA:HGNRKDN EMBL:DAAA02024017
EMBL:DAAA02024018 EMBL:DAAA02024019 EMBL:DAAA02024020
EMBL:DAAA02024021 EMBL:DAAA02024022 Ensembl:ENSBTAT00000027486
Uniprot:G5E5P9
Length = 908
Score = 282 (104.3 bits), Expect = 1.7e-37, Sum P(4) = 1.7e-37
Identities = 95/322 (29%), Positives = 154/322 (47%)
Query: 553 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVI 612
E IP +I+ L+ +Q G +F++ + IQ G GCIL MGLGKT QVI
Sbjct: 48 ENGDSIPYTINRYLRDYQREGAQFLYGHFIQ----------GRGCILGDDMGLGKTVQVI 97
Query: 613 AFLYTAMRSVNLGLRTALIVT-PVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAE 671
+FL + G R + P +L N K++ PS K ++F++ V+
Sbjct: 98 SFLAAVLGKK--GTREDIENNMPEFLLRNMKKD----PPSTAK--KMFLI--VAP---LS 144
Query: 672 LLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAR---EICH-ALQDGPDILVC------ 721
+L W+ + + GY FR + KD + R C AL + +C
Sbjct: 145 VLYNWKDELDTW--GY--FRVTILHGNKKDSELIRVKQRKCEIALTTYETLRLCLDELNS 200
Query: 722 --------DEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFL 773
DEAH IKN +A T+ +K ++C RI LTG+ LQNN+ E +C++D+ G L
Sbjct: 201 LEWSAVIVDEAHRIKNPKARVTEIMKALRCNVRIGLTGTILQNNMKELWCVMDWAVPGLL 260
Query: 774 GSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPK 833
GS F+ +F +P+E+GQ +T ++ + L ++ G+ R ++K LP K
Sbjct: 261 GSRIHFKKQFSDPVEHGQRHTATKRELATGRKAMQRLARKMSGWFLRRTKTLIKDQLPKK 320
Query: 834 TVFVITVKLSPLQRRLYKRFLD 855
++ L+ Q+ +Y+ L+
Sbjct: 321 EDRMVYCSLTDFQKAVYQTVLE 342
Score = 225 (84.3 bits), Expect = 1.7e-37, Sum P(4) = 1.7e-37
Identities = 58/140 (41%), Positives = 77/140 (55%)
Query: 952 TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKK 1011
T + YSGKM +L +L C DK L+FS S LD+++ Y
Sbjct: 437 TLSDPKYSGKMKVLQQLLNHCRKNKDKVLLFSFSTKLLDVLQQYCMA------------S 484
Query: 1012 GKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW 1071
G D+ RLDG T+S ER K+V+ FN + + C L+ST AG LG+N AN V++ D +W
Sbjct: 485 GLDYRRLDGSTKSEERIKIVKEFNSTQDVNI-C-LVSTMAGGLGLNFVGANVVVLFDPTW 542
Query: 1072 NPTYDLQAIYRAWR---CMD 1088
NP DLQAI RA+R C D
Sbjct: 543 NPANDLQAIDRAYRIGQCRD 562
Score = 40 (19.1 bits), Expect = 1.7e-37, Sum P(4) = 1.7e-37
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 140 NEKELALSEEQRKKFRKVKEEDD 162
NEK L EE+R ++++E++D
Sbjct: 7 NEK---LCEERRVPLKRLQEDED 26
Score = 39 (18.8 bits), Expect = 1.7e-37, Sum P(4) = 1.7e-37
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 860 TNDRVSNEKIRKSFFAGYQALAQIWNHPGILQ 891
TN + E ++ +F+ L ++ NH +LQ
Sbjct: 371 TNSQ--GETVKTLYFSYLAVLQKVANHVALLQ 400
>UNIPROTKB|H0Y3T0 [details] [associations]
symbol:ATRX "Transcriptional regulator ATRX" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR000330 Pfam:PF00176
GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001 PROSITE:PS51192
EMBL:AL121874 EMBL:AL109753 EMBL:Z84487 HGNC:HGNC:886
ProteinModelPortal:H0Y3T0 Ensembl:ENST00000400866 Uniprot:H0Y3T0
Length = 160
Score = 409 (149.0 bits), Expect = 4.6e-37, P = 4.6e-37
Identities = 73/140 (52%), Positives = 105/140 (75%)
Query: 716 PDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGS 775
PD +VCDE H++KN + ++A+ ++ +RRI LTG+PLQNNL+EY+CMV+F++E LGS
Sbjct: 2 PDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGS 61
Query: 776 SHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV 835
EFRNRF NPI+NGQ +ST DV++M +R+HILYE L G VQR D + K LPPK
Sbjct: 62 IKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHE 121
Query: 836 FVITVKLSPLQRRLYKRFLD 855
+V+ V+++ +Q +LY+ +LD
Sbjct: 122 YVLAVRMTSIQCKLYQYYLD 141
>UNIPROTKB|E1BFL2 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:DAAA02062232 EMBL:DAAA02062233 EMBL:DAAA02062234
EMBL:DAAA02062235 IPI:IPI00733931 Ensembl:ENSBTAT00000046144
Uniprot:E1BFL2
Length = 1482
Score = 279 (103.3 bits), Expect = 3.0e-36, Sum P(3) = 3.0e-36
Identities = 82/269 (30%), Positives = 138/269 (51%)
Query: 625 GLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDV-SRDRRAELLAKWRAK-GGV 682
GL +IV P V+H W +EF W P+ RV +L + S + E L + A+ G+
Sbjct: 556 GLGPTIIVCPTTVMHQWVKEFHTWWPA----FRVAVLHETGSFTHKKEKLVRDIARCHGI 611
Query: 683 FLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVK 742
+ Y+ R + +D +++R H ++ DE H I+N A T A KQ +
Sbjct: 612 LITSYSYIRLM------QD-DISRHDWH-------YVILDEGHKIRNPNAAVTLACKQFR 657
Query: 743 CQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKI 802
RI L+GSP+QNNL E + + DF+ G LG+ F +F PI G ++N++ VK
Sbjct: 658 TPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKT 717
Query: 803 MNQRSHILYEQLKGFV-QRMDMNV-VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFT 860
+ + +L + + ++ +RM +V + LP K V+ +L+ Q ++Y+ F+D
Sbjct: 718 AYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKEVY 777
Query: 861 NDRVSNEKIRKSFFAGYQALAQIWNHPGI 889
R+ N +++ F+G AL +I NHP +
Sbjct: 778 --RILNGEMQ--IFSGLVALRKICNHPDL 802
Score = 215 (80.7 bits), Expect = 3.0e-36, Sum P(3) = 3.0e-36
Identities = 53/132 (40%), Positives = 75/132 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKM+++ +L + G + L+FSQS LD++E +L R K L ++
Sbjct: 829 SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFL----RAQKYSYL--------KM 876
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T + RQ L+ R+NE + + L++TR G LG+NL ANRVII D WNP+ D Q
Sbjct: 877 DGTTAIASRQPLITRYNEDTS--IFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQ 934
Query: 1079 AIYRAWRCMDKQ 1090
A RAWR K+
Sbjct: 935 ARERAWRIGQKK 946
Score = 45 (20.9 bits), Expect = 3.0e-36, Sum P(3) = 3.0e-36
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 120 EEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDD 162
EE+E+ G +D P + E+ L L+ +R+K V+E DD
Sbjct: 381 EELEETVG-ADLP--GEGSDWEQRLVLNRRKRQKKVTVQEIDD 420
Score = 37 (18.1 bits), Expect = 2.0e-35, Sum P(3) = 2.0e-35
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 68 SVYLASTPQQAAAMGLKFPGVDEVTDFSSNCPNMWKFRSIITYRLCKVSGSVEEIED 124
S YL + + +G PG E +D W+ R ++ R + +V+EI+D
Sbjct: 374 SEYLPTEEELEETVGADLPG--EGSD--------WEQRLVLNRRKRQKKVTVQEIDD 420
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 231 (86.4 bits), Expect = 4.4e-36, Sum P(3) = 4.4e-36
Identities = 56/132 (42%), Positives = 77/132 (58%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKMV+L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 488 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC-----------MWR-GYEYCRL 535
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG+T ER++ +E FN P + R ++STRAG LGINL SA+ VI+ D WNP DLQ
Sbjct: 536 DGQTPHEEREEAIEAFNVPNSSRF-IFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQ 594
Query: 1079 AIYRAWRCMDKQ 1090
A+ RA R K+
Sbjct: 595 AMDRAHRIGQKK 606
Score = 180 (68.4 bits), Expect = 4.4e-36, Sum P(3) = 4.4e-36
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 311 LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 370
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F + F T + D K++ +R H + LK F+ R V+K LPPK I
Sbjct: 371 FDSWFD--------TKNCLGDQKLV-ERLHAV---LKPFLLRRIKTDVEKSLPPKKEIKI 418
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
+ LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 419 YLGLSKMQREWYTKILMKDID-VLNSAGKMDKMR--LLNILMQLRKCCNHP 466
Score = 117 (46.2 bits), Expect = 4.4e-36, Sum P(3) = 4.4e-36
Identities = 31/82 (37%), Positives = 41/82 (50%)
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
+ G+ ILA MGLGKT Q IA L N+ +++ P + LHNW EF +W PS
Sbjct: 202 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPS 260
Query: 652 ELKPLRVFMLEDVSRDRRAELL 673
LRV +D RA +
Sbjct: 261 ----LRVICFVG-DKDARAAFI 277
>ZFIN|ZDB-GENE-110411-274 [details] [associations]
symbol:si:ch211-248d20.2 "si:ch211-248d20.2"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-110411-274
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:CR376747 IPI:IPI00994578 RefSeq:XP_689596.5 UniGene:Dr.83737
Ensembl:ENSDART00000122774 Ensembl:ENSDART00000125173 GeneID:553504
KEGG:dre:553504 NextBio:20880249 Uniprot:F1QJP0
Length = 1269
Score = 281 (104.0 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 95/310 (30%), Positives = 150/310 (48%)
Query: 556 VRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL 615
V++P +I+ L+ +Q GI+F+++N +S GCIL MGLGKT QVI FL
Sbjct: 50 VKVPYTINRYLRDYQREGIKFIYQNYAKS----------RGCILGDDMGLGKTVQVIGFL 99
Query: 616 YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLE---DVSRDRRAEL 672
++ T +V +N Q + +PSE + +VF++ V + + EL
Sbjct: 100 AAVLQKTG---------TWKDVENNRPQFLLSQKPSE-RVQKVFVIVAPLSVLYNWKDEL 149
Query: 673 LAKWRAKGGVFLIGYTAFRNLSF---GKHVKDRNMAREICHALQDGPDI----LVCDEAH 725
W V + G L+ G+ + L I ++ DEAH
Sbjct: 150 -DTWGHFRVVVVHGVRKDEELARVQRGRCEIALTTYETLRLCLDQFNSINWAAVIVDEAH 208
Query: 726 MIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQN 785
IKN ++ TQA+KQ++C+ RI LTG+ LQNNL E +C++++ LGS F+NRF +
Sbjct: 209 KIKNHKSKITQAVKQMRCKVRIGLTGTILQNNLEELWCVMNWAVPRCLGSLGAFKNRFSD 268
Query: 786 PIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPL 845
PIE GQ T + + L ++L + R +++ LP K V+ L+
Sbjct: 269 PIEKGQKHTVTKRALAEGRKAVQELAKKLSRWFLRRTKSLISDQLPKKDDRVVYCSLTDF 328
Query: 846 QRRLYKRFLD 855
QR +Y+ LD
Sbjct: 329 QRTVYRAVLD 338
Score = 210 (79.0 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 53/134 (39%), Positives = 75/134 (55%)
Query: 958 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYR 1017
YSGKM ++ +L DK L+FS S LD++E Y +G +++R
Sbjct: 440 YSGKMKVMQKLLNHFIAKKDKVLLFSLSTKLLDVLESYCMA------------EGLEYHR 487
Query: 1018 LDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDL 1077
LDG T+S +R K+V+ FN ++ V L+ST AG LG+N AN V++ D +WNP DL
Sbjct: 488 LDGNTKSKDRVKIVKEFNS--SRDVNLCLVSTLAGGLGLNFIGANVVVLFDPTWNPANDL 545
Query: 1078 QAI---YRAWRCMD 1088
QAI YR +C D
Sbjct: 546 QAIDRVYRIGQCRD 559
Score = 39 (18.8 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 869 IRKSFFAGYQALAQIWNHPGILQLTKD 895
+R +F+ L ++ NH +LQ +KD
Sbjct: 374 VRHLYFSYLAILRKVANHVALLQ-SKD 399
Score = 37 (18.1 bits), Expect = 3.4e-10, Sum P(3) = 3.4e-10
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 145 ALSEEQRKKFRKVKEEDDANM 165
+L++ QR +R V + DD +
Sbjct: 324 SLTDFQRTVYRAVLDSDDVTL 344
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 231 (86.4 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 56/132 (42%), Positives = 77/132 (58%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKMV+L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 488 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC-----------MWR-GYEYCRL 535
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG+T ER++ +E FN P + R ++STRAG LGINL SA+ VI+ D WNP DLQ
Sbjct: 536 DGQTPHEEREEAIEAFNVPNSSRF-IFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQ 594
Query: 1079 AIYRAWRCMDKQ 1090
A+ RA R K+
Sbjct: 595 AMDRAHRIGQKK 606
Score = 180 (68.4 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 311 LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 370
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F + F T + D K++ +R H + LK F+ R V+K LPPK I
Sbjct: 371 FDSWFD--------TKNCLGDQKLV-ERLHAV---LKPFLLRRIKTDVEKSLPPKKEIKI 418
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
+ LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 419 YLGLSKMQREWYTKILMKDID-VLNSAGKMDKMR--LLNILMQLRKCCNHP 466
Score = 117 (46.2 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 31/82 (37%), Positives = 41/82 (50%)
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
+ G+ ILA MGLGKT Q IA L N+ +++ P + LHNW EF +W PS
Sbjct: 202 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPS 260
Query: 652 ELKPLRVFMLEDVSRDRRAELL 673
LRV +D RA +
Sbjct: 261 ----LRVICFVG-DKDARAAFI 277
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 205 (77.2 bits), Expect = 4.2e-35, Sum P(3) = 4.2e-35
Identities = 72/252 (28%), Positives = 121/252 (48%)
Query: 656 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 715
LR + +R+A+ AK RA G F + T F + +K+R + ++
Sbjct: 842 LRTISFKGSPNERKAKQ-AKIRA--GEFDVVLTTFEYI-----IKERALLSKVKWVH--- 890
Query: 716 PDILVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLG 774
++ DE H +KN ++ + L R+ LTG+PLQNNL E + +++FV
Sbjct: 891 ---MIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQNNLPELWALLNFVLPKIFN 947
Query: 775 SSHEFRNRFQNPIEN--GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP 832
S F F P N GQ SE+ ++ R L++ L+ F+ R V+K+LP
Sbjct: 948 SVKSFDEWFNTPFANTGGQDKIELSEEETLLVIRR--LHKVLRPFLLRRLKKDVEKELPD 1005
Query: 833 KTVFVITVKLSPLQRRLYKRFLDLHG-FTNDRVSNEKI--RKSFFAGYQALAQIWNHPGI 889
K V+ K+S LQ+ +Y++ L F D+ +N+K+ + F L +I NHP +
Sbjct: 1006 KVEKVVKCKMSALQQIMYQQMLKYRRLFIGDQ-NNKKMVGLRGFNNQIMQLKKICNHPFV 1064
Query: 890 LQLTKDKGYPSR 901
+ +D+ P+R
Sbjct: 1065 FEEVEDQINPTR 1076
Score = 193 (73.0 bits), Expect = 4.2e-35, Sum P(3) = 4.2e-35
Identities = 52/137 (37%), Positives = 71/137 (51%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
+GK LL IL G + L+F Q +D++E +L + + RL
Sbjct: 1086 AGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYI------------NIKYLRL 1133
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T+S ER +L+ FN P + C ++STRAG LG+NL +A+ VII D WNP DLQ
Sbjct: 1134 DGHTKSDERSELLRLFNAP-DSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQ 1192
Query: 1079 AIYRAWRCMDKQSQFLL 1095
A RA R K +L
Sbjct: 1193 AQDRAHRIGQKNEVRIL 1209
Score = 135 (52.6 bits), Expect = 4.2e-35, Sum P(3) = 4.2e-35
Identities = 47/146 (32%), Positives = 68/146 (46%)
Query: 546 NVVREKGEEAVRIPSS-ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMG 604
NV E+ + PS + LK +Q+ G+++M V + L ILA MG
Sbjct: 746 NVAHRIKEDIKKQPSILVGGTLKDYQIKGLQWM----------VSLFNNHLNGILADEMG 795
Query: 605 LGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDV 664
LGKT Q I+ L N+ L++ P++ L NW EF KW P+ LR +
Sbjct: 796 LGKTIQTISLLTYLYEMKNIR-GPYLVIVPLSTLSNWSSEFAKWAPT----LRTISFKGS 850
Query: 665 SRDRRAELLAKWRAKGGVFLIGYTAF 690
+R+A+ AK RA G F + T F
Sbjct: 851 PNERKAKQ-AKIRA--GEFDVVLTTF 873
Score = 44 (20.5 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 946 DLLHEHTYKELDYSGKMV 963
+++ E YK+LD GK++
Sbjct: 1219 EVILERAYKKLDIDGKVI 1236
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 203 (76.5 bits), Expect = 5.6e-35, Sum P(3) = 5.6e-35
Identities = 58/188 (30%), Positives = 92/188 (48%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQR-RIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KNT++ + L Q R R+ LTG+PLQNNL E + +++FV S
Sbjct: 661 MIVDEGHRMKNTQSKLSSTLSQYYTSRYRLILTGTPLQNNLPELWALLNFVLPNIFKSVK 720
Query: 778 EFRNRFQNPIEN--GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV 835
F F P N GQ +E+ +++ R L++ L+ F+ R V+KDLP K
Sbjct: 721 SFDEWFNTPFANTGGQDRMDLTEEEQLLVIRR--LHKVLRPFLLRRLKKDVEKDLPDKQE 778
Query: 836 FVITVKLSPLQRRLYKRFLDLHG--FTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLT 893
VI + S LQ +L K+ L H +D + + L ++ NHP + +
Sbjct: 779 RVIKCRFSALQAKLNKQ-LATHNKMVVSDGKGGKVGMRGLSNMLMQLRKLCNHPFVFEQV 837
Query: 894 KDKGYPSR 901
+D+ P R
Sbjct: 838 EDQVNPGR 845
Score = 193 (73.0 bits), Expect = 5.6e-35, Sum P(3) = 5.6e-35
Identities = 53/137 (38%), Positives = 74/137 (54%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
+GK LL IL G + L+F Q ++++E +L +L +G + RL
Sbjct: 855 AGKFELLDRILPKFKATGHRVLMFFQMTQIMNIMEDFL----------RL--RGMKYLRL 902
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T+S +R L++ FN P + C L+STRAG LG+NL +A+ VII D WNP DLQ
Sbjct: 903 DGSTKSDDRSDLLKLFNAP-DSEYFCFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQ 961
Query: 1079 AIYRAWRCMDKQSQFLL 1095
A RA R K +L
Sbjct: 962 AQDRAHRIGQKNEVRIL 978
Score = 133 (51.9 bits), Expect = 5.6e-35, Sum P(3) = 5.6e-35
Identities = 43/130 (33%), Positives = 62/130 (47%)
Query: 524 DGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSS-ISAKLKAHQVVGIRFMWENII 582
D D+++G+ E G Y R K EE PS + LK +Q+ G+++M
Sbjct: 495 DEDIASGSDEEGEGRRKIDYYAVAHRIK-EEITEQPSILVGGTLKEYQMKGLQWM----- 548
Query: 583 QSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL-YTAMRSVNLGLRTALIVTPVNVLHNW 641
+ + L ILA MGLGKT Q I+ + + R N G L++ P++ L NW
Sbjct: 549 -----ISLYNNNLNGILADEMGLGKTIQTISLITHIIERKRNNG--PFLVIVPLSTLTNW 601
Query: 642 KQEFMKWRPS 651
EF KW PS
Sbjct: 602 NLEFEKWAPS 611
>ZFIN|ZDB-GENE-060531-56 [details] [associations]
symbol:ercc6l "excision repair cross-complementing
rodent repair deficiency, complementation group 6-like"
species:7955 "Danio rerio" [GO:0016539 "intein-mediated protein
splicing" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0000777
"condensed chromosome kinetochore" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR006141 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060531-56 GO:GO:0005524 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
GO:GO:0016539 CTD:54821 GeneTree:ENSGT00590000083118
OrthoDB:EOG4FR0RD EMBL:CR391924 EMBL:BX510925 EMBL:BC150168
IPI:IPI00635423 RefSeq:NP_001093563.1 UniGene:Dr.38615
ProteinModelPortal:A2BGR3 Ensembl:ENSDART00000015401
GeneID:100005291 KEGG:dre:100005291 InParanoid:A2BGR3
NextBio:20786618 Bgee:A2BGR3 Uniprot:A2BGR3
Length = 1451
Score = 287 (106.1 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 79/237 (33%), Positives = 122/237 (51%)
Query: 596 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKP 655
G ILA MGLGKT QVI+FL + M L T L+V P +++ NW +EF KW P
Sbjct: 126 GGILADDMGLGKTIQVISFL-SGMYDAELANHT-LLVMPTSLIKNWVREFAKWTPG---- 179
Query: 656 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 715
+RV S+ R L + + KGGV + T ++ L N RE
Sbjct: 180 MRVKEFHGSSKTERNRNLERIQRKGGVII---TTYQMLINNYEQLGSNGHREFKW----- 231
Query: 716 PDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-FLG 774
D ++ DEAH IK + T ++ + + R+ LTG+P+QNNL E + + DF +G LG
Sbjct: 232 -DYVILDEAHKIKTSSTKTAKSAHAIPAKNRVLLTGTPVQNNLREMWALFDFACQGSLLG 290
Query: 775 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKKDL 830
+S F+ ++NPI + ++T + + + S L + +K F++R +V +K L
Sbjct: 291 TSKTFKTEYENPITRAREKDATPGEKALGLRISQNLTDIIKPYFLRRTKADVQQKKL 347
Score = 186 (70.5 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 50/141 (35%), Positives = 78/141 (55%)
Query: 946 DLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQ 1005
D + +HT ++ SGK+ ++ ++ G ++L+FSQS LD++E L +
Sbjct: 463 DNISDHTL--IEESGKLQFVVSLMECLREEGHRTLIFSQSRKMLDIMERVLRN-----RN 515
Query: 1006 GKLWKKGKDWYRLDGR-TESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRV 1064
+L RLDG T+ +ER+K + F +KR L++T+ G +GI L ANRV
Sbjct: 516 FRL-------LRLDGTVTQLAEREKRISLFQT--DKRYTIFLLTTQVGGVGITLTGANRV 566
Query: 1065 IIVDGSWNPTYDLQAIYRAWR 1085
+I D SWNP D QA+ RA+R
Sbjct: 567 VIFDPSWNPATDAQAVDRAYR 587
Score = 37 (18.1 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 70 YLASTPQQAAAMGLKFP-GVDEVTDFSSNCPN 100
+L T LK G +E D + CPN
Sbjct: 334 FLRRTKADVQQKKLKLEEGFEEEEDQENKCPN 365
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 215 (80.7 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 52/127 (40%), Positives = 73/127 (57%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKMV+L +L G + L+FSQ LD++E Y +W+ ++ RL
Sbjct: 467 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYC-----------MWRN-YEYCRL 514
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG+T ERQ + +NEP + + ++STRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 515 DGQTPHDERQASINAYNEPGSSKF-VFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 573
Query: 1079 AIYRAWR 1085
A+ RA R
Sbjct: 574 AMDRAHR 580
Score = 192 (72.6 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 58/171 (33%), Positives = 88/171 (51%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ SS +
Sbjct: 290 LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSED 349
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F + F TN+ D K++ +R H++ L+ F+ R V+K LPPK I
Sbjct: 350 FDSWFD--------TNNCLGDQKLV-ERLHMV---LRPFLLRRIKADVEKSLPPKKEVKI 397
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
V LS +QR Y R L D+ N +K+R L + NHP
Sbjct: 398 YVGLSKMQREWYTRILMKDID-ILNSAGKLDKMR--LLNILMQLRKCCNHP 445
Score = 114 (45.2 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 36/113 (31%), Positives = 58/113 (51%)
Query: 559 PSSIS-AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 617
PS + KL+ +QV G+ ++ + + G+ ILA MGLGKT Q I+ L
Sbjct: 157 PSYVKWGKLRDYQVRGLNWL----------ISLYENGINGILADEMGLGKTLQTISLLGY 206
Query: 618 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRA 670
N+ +++ P + LHNW EF +W P+ L+ V ++ D +D+RA
Sbjct: 207 MKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPT-LRA--VCLIGD--KDQRA 253
>TAIR|locus:2040184 [details] [associations]
symbol:PKL "PICKLE" species:3702 "Arabidopsis thaliana"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0016568
"chromatin modification" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=IMP] [GO:0009733 "response to
auxin stimulus" evidence=IMP] [GO:2000023 "regulation of lateral
root development" evidence=IMP] [GO:0009788 "negative regulation of
abscisic acid mediated signaling pathway" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0009739 "response to gibberellin
stimulus" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0008270
GO:GO:0016568 GO:GO:0048364 GO:GO:0009739 GO:GO:0009788
GO:GO:0009736 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOGENOM:HOG000231124 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF185578 EMBL:AF185577 EMBL:AK229409 IPI:IPI00521160
PIR:T52301 RefSeq:NP_565587.1 UniGene:At.11745
ProteinModelPortal:Q9S775 SMR:Q9S775 STRING:Q9S775 PaxDb:Q9S775
PRIDE:Q9S775 EnsemblPlants:AT2G25170.1 GeneID:817055
KEGG:ath:AT2G25170 TAIR:At2g25170 InParanoid:Q9S775 OMA:NVVMYFG
PhylomeDB:Q9S775 ProtClustDB:CLSN2688404 Genevestigator:Q9S775
GermOnline:AT2G25170 GO:GO:2000023 Uniprot:Q9S775
Length = 1384
Score = 234 (87.4 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 79/269 (29%), Positives = 118/269 (43%)
Query: 590 SGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWR 649
S K ILA MGLGKT Q IA L + L L++ P++ L NW++EF W
Sbjct: 287 SWSKQTHVILADEMGLGKTIQSIALLASLFEE---NLIPHLVIAPLSTLRNWEREFATWA 343
Query: 650 PSELKPLRVF---MLEDVSRDRRAELLA---KWRAKGGVFLIGYTAFRNLSFGKHVKDRN 703
P ++ + F V R+ L K + K + + + + F +
Sbjct: 344 P-QMNVVMYFGTAQARAVIREHEFYLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSYE 402
Query: 704 MAREICHALQDGP-DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYY 762
M L+ + ++ DE H +KN + +L Q RI LTG+PLQNNL E +
Sbjct: 403 MINLDSAVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELF 462
Query: 763 CMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMD 822
++ F+ G GS EF+ F+ D+ Q S L++ L + R
Sbjct: 463 MLMHFLDAGKFGSLEEFQEEFK--------------DINQEEQISR-LHKMLAPHLLRRV 507
Query: 823 MNVVKKDLPPKTVFVITVKLSPLQRRLYK 851
V KD+PPK ++ V LS LQ+ YK
Sbjct: 508 KKDVMKDMPPKKELILRVDLSSLQKEYYK 536
Score = 208 (78.3 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 54/142 (38%), Positives = 80/142 (56%)
Query: 947 LLHE--HTYKEL-DYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPG 1003
++H+ +K+L + GK+ LL ++ G + L+++Q LDL+E Y +
Sbjct: 579 VIHDANEAFKQLLESCGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTH----- 633
Query: 1004 KQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANR 1063
K W+ + R+DG+ +ERQ ++RFN N C L+STRAG LGINL +A+
Sbjct: 634 ---KKWQ----YERIDGKVGGAERQIRIDRFNAK-NSNKFCFLLSTRAGGLGINLATADT 685
Query: 1064 VIIVDGSWNPTYDLQAIYRAWR 1085
VII D WNP DLQA+ RA R
Sbjct: 686 VIIYDSDWNPHADLQAMARAHR 707
Score = 82 (33.9 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 373 DCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCC-CCSP 428
D E C CG S++LVSC +C F C+ + +A + + W+C C SP
Sbjct: 46 DAKENACQACGESTNLVSCNTCTYAFHAKCLVPPLKDASVEN------WRCPECVSP 96
Score = 46 (21.3 bits), Expect = 7.0e-31, Sum P(3) = 7.0e-31
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 322 NSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECY 378
N+ H Q E F + + VAI + ++ C++ LE + K+ ECY
Sbjct: 166 NNFHRQM--ESFNNSEDDFVAIRPEWTTVDRILACREEDGELEYLVKYKELSYDECY 220
Score = 42 (19.8 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 135 ADAIANEKELALSEEQRKKFRKVK 158
A A+ E E LS++Q KK +K K
Sbjct: 357 ARAVIREHEFYLSKDQ-KKIKKKK 379
Score = 39 (18.8 bits), Expect = 3.6e-17, Sum P(3) = 3.6e-17
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 1002 PG-KQGKLWKKGKD 1014
PG + GK+WK+ D
Sbjct: 1061 PGLRSGKIWKEEHD 1074
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 217 (81.4 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 53/127 (41%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKMV+L +L G + L+FSQ LD++E Y +W+ ++ RL
Sbjct: 481 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYC-----------MWRN-YEYCRL 528
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG+T ERQ + +NEP N ++STRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 529 DGQTPHDERQDSINAYNEP-NSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 587
Query: 1079 AIYRAWR 1085
A+ RA R
Sbjct: 588 AMDRAHR 594
Score = 188 (71.2 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 57/171 (33%), Positives = 88/171 (51%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 304 LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADD 363
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F + F TN+ D K++ +R H++ L+ F+ R V+K LPPK I
Sbjct: 364 FDSWFD--------TNNCLGDQKLV-ERLHMV---LRPFLLRRIKADVEKSLPPKKEVKI 411
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
V LS +QR Y R L D+ N +K+R L + NHP
Sbjct: 412 YVGLSKMQREWYTRILMKDID-ILNSAGKMDKMR--LLNILMQLRKCCNHP 459
Score = 115 (45.5 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 31/94 (32%), Positives = 47/94 (50%)
Query: 559 PSSIS-AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 617
PS + KL+ +QV G+ ++ + + G+ ILA MGLGKT Q I+ L
Sbjct: 171 PSYVKWGKLRDYQVRGLNWL----------ISLYENGINGILADEMGLGKTLQTISLLGY 220
Query: 618 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
N+ +++ P + LHNW EF KW P+
Sbjct: 221 MKHYRNIP-GPHMVLVPKSTLHNWMSEFKKWVPT 253
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 219 (82.2 bits), Expect = 1.7e-34, Sum P(3) = 1.7e-34
Identities = 53/127 (41%), Positives = 73/127 (57%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKMV+L +L G + L+FSQ LD++E Y +W+ ++ RL
Sbjct: 482 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYC-----------MWRN-YEYCRL 529
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG+T ERQ+ + +NEP N ++STRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 530 DGQTPHDERQESINAYNEP-NSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 588
Query: 1079 AIYRAWR 1085
A+ RA R
Sbjct: 589 AMDRAHR 595
Score = 188 (71.2 bits), Expect = 1.7e-34, Sum P(3) = 1.7e-34
Identities = 57/171 (33%), Positives = 88/171 (51%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 305 LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADD 364
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F + F TN+ D K++ +R H++ L+ F+ R V+K LPPK I
Sbjct: 365 FDSWFD--------TNNCLGDQKLV-ERLHMV---LRPFLLRRIKADVEKSLPPKKEVKI 412
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
V LS +QR Y R L D+ N +K+R L + NHP
Sbjct: 413 YVGLSKMQREWYTRILMKDID-ILNSAGKMDKMR--LLNILMQLRKCCNHP 460
Score = 112 (44.5 bits), Expect = 1.7e-34, Sum P(3) = 1.7e-34
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 559 PSSIS-AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 617
PS + KL+ +QV G+ ++ + + G+ ILA MGLGKT Q I+ L
Sbjct: 172 PSYVKWGKLRDYQVRGLNWL----------ISLYENGINGILADEMGLGKTLQTISLLGY 221
Query: 618 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
N+ +++ P + LHNW EF +W P+
Sbjct: 222 MKHYRNIP-GPHMVLVPKSTLHNWMSEFKRWVPT 254
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 219 (82.2 bits), Expect = 1.7e-34, Sum P(3) = 1.7e-34
Identities = 53/127 (41%), Positives = 73/127 (57%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKMV+L +L G + L+FSQ LD++E Y +W+ ++ RL
Sbjct: 482 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYC-----------MWRN-YEYCRL 529
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG+T ERQ+ + +NEP N ++STRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 530 DGQTPHDERQESINAYNEP-NSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 588
Query: 1079 AIYRAWR 1085
A+ RA R
Sbjct: 589 AMDRAHR 595
Score = 188 (71.2 bits), Expect = 1.7e-34, Sum P(3) = 1.7e-34
Identities = 57/171 (33%), Positives = 88/171 (51%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 305 LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADD 364
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F + F TN+ D K++ +R H++ L+ F+ R V+K LPPK I
Sbjct: 365 FDSWFD--------TNNCLGDQKLV-ERLHMV---LRPFLLRRIKADVEKSLPPKKEVKI 412
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
V LS +QR Y R L D+ N +K+R L + NHP
Sbjct: 413 YVGLSKMQREWYTRILMKDID-ILNSAGKMDKMR--LLNILMQLRKCCNHP 460
Score = 112 (44.5 bits), Expect = 1.7e-34, Sum P(3) = 1.7e-34
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 559 PSSIS-AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 617
PS + KL+ +QV G+ ++ + + G+ ILA MGLGKT Q I+ L
Sbjct: 172 PSYVKWGKLRDYQVRGLNWL----------ISLYENGINGILADEMGLGKTLQTISLLGY 221
Query: 618 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
N+ +++ P + LHNW EF +W P+
Sbjct: 222 MKHYRNIP-GPHMVLVPKSTLHNWMSEFKRWVPT 254
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 219 (82.2 bits), Expect = 1.7e-34, Sum P(3) = 1.7e-34
Identities = 53/127 (41%), Positives = 73/127 (57%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKMV+L +L G + L+FSQ LD++E Y +W+ ++ RL
Sbjct: 482 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYC-----------MWRN-YEYCRL 529
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG+T ERQ+ + +NEP N ++STRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 530 DGQTPHDERQESINAYNEP-NSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 588
Query: 1079 AIYRAWR 1085
A+ RA R
Sbjct: 589 AMDRAHR 595
Score = 188 (71.2 bits), Expect = 1.7e-34, Sum P(3) = 1.7e-34
Identities = 57/171 (33%), Positives = 88/171 (51%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 305 LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADD 364
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F + F TN+ D K++ +R H++ L+ F+ R V+K LPPK I
Sbjct: 365 FDSWFD--------TNNCLGDQKLV-ERLHMV---LRPFLLRRIKADVEKSLPPKKEVKI 412
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
V LS +QR Y R L D+ N +K+R L + NHP
Sbjct: 413 YVGLSKMQREWYTRILMKDID-ILNSAGKMDKMR--LLNILMQLRKCCNHP 460
Score = 112 (44.5 bits), Expect = 1.7e-34, Sum P(3) = 1.7e-34
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 559 PSSIS-AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 617
PS + KL+ +QV G+ ++ + + G+ ILA MGLGKT Q I+ L
Sbjct: 172 PSYVKWGKLRDYQVRGLNWL----------ISLYENGINGILADEMGLGKTLQTISLLGY 221
Query: 618 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
N+ +++ P + LHNW EF +W P+
Sbjct: 222 MKHYRNIP-GPHMVLVPKSTLHNWMSEFKRWVPT 254
>TAIR|locus:2054011 [details] [associations]
symbol:CHR8 "chromatin remodeling 8" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0010332 "response to
gamma radiation" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0010332 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AC005724 HOGENOM:HOG000170952 KO:K10841 IPI:IPI00524515
PIR:C84568 RefSeq:NP_179466.1 UniGene:At.39947
ProteinModelPortal:Q9ZV43 SMR:Q9ZV43 STRING:Q9ZV43 PaxDb:Q9ZV43
PRIDE:Q9ZV43 EnsemblPlants:AT2G18760.1 GeneID:816391
KEGG:ath:AT2G18760 TAIR:At2g18760 InParanoid:Q9ZV43 OMA:TETSNIF
PhylomeDB:Q9ZV43 ProtClustDB:CLSN2683061 ArrayExpress:Q9ZV43
Genevestigator:Q9ZV43 Uniprot:Q9ZV43
Length = 1187
Score = 258 (95.9 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 101/359 (28%), Positives = 158/359 (44%)
Query: 553 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVI 612
E + IP I KL +Q VG++++WE Q G I+ MGLGKT QV+
Sbjct: 372 EGGLNIPECIFRKLFDYQRVGVQWLWELHCQRA----------GGIIGDEMGLGKTIQVL 421
Query: 613 AFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDR---R 669
+FL + S + ++I+ PV +L W++E KW P V +L D ++D +
Sbjct: 422 SFLGSLHFSKMY--KPSIIICPVTLLRQWRREAQKWYPD----FHVEILHDSAQDSGHGK 475
Query: 670 AELLAK---WRAKGGVFLIGYTAFRNLSFGKHVKDRNMARE----ICHALQ---DGPDIL 719
+ A + ++ V +N + +R + E I Q G +L
Sbjct: 476 GQGKASESDYDSESSVDSDHEPKSKNTKKWDSLLNRVLNSESGLLITTYEQLRLQGEKLL 535
Query: 720 -------VCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGF 772
V DE H I+N +D T KQ++ RI +TG+P+QN L E + + DFV G
Sbjct: 536 NIEWGYAVLDEGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGK 595
Query: 773 LGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP 832
LG F F PI G + N++ V + + +L + + ++ R V L
Sbjct: 596 LGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHLTK 655
Query: 833 KTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQ 891
KT V+ L+ QR Y+ FL N R S + G + +I NHP +L+
Sbjct: 656 KTEHVLFCSLTVEQRSTYRAFLASSEVEQIFDGN---RNSLY-GIDVMRKICNHPDLLE 710
Score = 204 (76.9 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 54/151 (35%), Positives = 81/151 (53%)
Query: 946 DLLH-EHTYKELDY-----SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKL 999
DLL EH+++ DY SGKM ++ ++L + G + L+FSQ+ LD++E +L
Sbjct: 707 DLLEREHSHQNPDYGNPERSGKMKVVAEVLKVWKQQGHRVLLFSQTQQMLDILESFLVA- 765
Query: 1000 PRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLH 1059
+ R+DG T +R L++ FN + V +++T+ G LG NL
Sbjct: 766 -----------NEYSYRRMDGLTPVKQRMALIDEFNNSEDMFV--FVLTTKVGGLGTNLT 812
Query: 1060 SANRVIIVDGSWNPTYDLQAIYRAWRCMDKQ 1090
ANRVII D WNP+ D+QA RAWR K+
Sbjct: 813 GANRVIIFDPDWNPSNDMQARERAWRIGQKK 843
Score = 56 (24.8 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 197 SAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQN-LETGVLESSVKERSL 247
S VE + A K L KK D+ D+ G ++ ALQ+ L T L S +K+R +
Sbjct: 79 STVENVDEIAAEKGL--KKDDESDLQGLHSGSALQHALATDRLRS-LKKRKI 127
Score = 42 (19.8 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 109 TYRLCKVSGSVEEIEDVDGNSDDPFVADA---IANEKELALSEEQRK 152
TYR S VE+I DGN + + D I N +L E +
Sbjct: 672 TYRAFLASSEVEQI--FDGNRNSLYGIDVMRKICNHPDLLEREHSHQ 716
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 218 (81.8 bits), Expect = 2.6e-34, Sum P(3) = 2.6e-34
Identities = 53/132 (40%), Positives = 76/132 (57%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKM++L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 409 SGKMLVLDKLLAKLREQGSRVLLFSQMTRLLDILEDYC-----------MWR-GYEYCRL 456
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG+T ER++ ++ FN P N ++STRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 457 DGQTPHEEREEAIDTFNAP-NSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 515
Query: 1079 AIYRAWRCMDKQ 1090
A+ RA R K+
Sbjct: 516 AMDRAHRIGQKK 527
Score = 182 (69.1 bits), Expect = 2.6e-34, Sum P(3) = 2.6e-34
Identities = 56/171 (32%), Positives = 86/171 (50%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 232 LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 291
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F + F T + D K++ +R H + LK F+ R V+K LPPK I
Sbjct: 292 FDSWFD--------TKNCLGDQKLV-ERLHAV---LKPFLLRRIKAEVEKSLPPKKEVKI 339
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
+ LS +QR Y R L D+ N +K+R L + NHP
Sbjct: 340 YLGLSKMQREWYTRILMKDID-ILNSAGKMDKMR--LLNILMQLRKCCNHP 387
Score = 116 (45.9 bits), Expect = 2.6e-34, Sum P(3) = 2.6e-34
Identities = 31/82 (37%), Positives = 44/82 (53%)
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
+ G+ ILA MGLGKT Q IA L N+ +++ P + LHNW EF +W PS
Sbjct: 123 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPS 181
Query: 652 ELKPLRVFMLEDVSRDRRAELL 673
L+ V ++ D +D RA +
Sbjct: 182 -LRA--VCLIGD--KDARAAFI 198
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 217 (81.4 bits), Expect = 2.8e-34, Sum P(3) = 2.8e-34
Identities = 53/127 (41%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKMV+L +L G + L+FSQ LD++E Y +W+ ++ RL
Sbjct: 481 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYC-----------MWRN-YEYCRL 528
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG+T ERQ + +NEP N ++STRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 529 DGQTPHDERQDSINAYNEP-NSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 587
Query: 1079 AIYRAWR 1085
A+ RA R
Sbjct: 588 AMDRAHR 594
Score = 188 (71.2 bits), Expect = 2.8e-34, Sum P(3) = 2.8e-34
Identities = 57/171 (33%), Positives = 88/171 (51%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 304 LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADD 363
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F + F TN+ D K++ +R H++ L+ F+ R V+K LPPK I
Sbjct: 364 FDSWFD--------TNNCLGDQKLV-ERLHMV---LRPFLLRRIKADVEKSLPPKKEVKI 411
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
V LS +QR Y R L D+ N +K+R L + NHP
Sbjct: 412 YVGLSKMQREWYTRILMKDID-ILNSAGKMDKMR--LLNILMQLRKCCNHP 459
Score = 112 (44.5 bits), Expect = 2.8e-34, Sum P(3) = 2.8e-34
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 559 PSSIS-AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 617
PS + KL+ +QV G+ ++ + + G+ ILA MGLGKT Q I+ L
Sbjct: 171 PSYVKWGKLRDYQVRGLNWL----------ISLYENGINGILADEMGLGKTLQTISLLGY 220
Query: 618 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
N+ +++ P + LHNW EF +W P+
Sbjct: 221 MKHYRNIP-GPHMVLVPKSTLHNWMSEFKRWVPT 253
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 217 (81.4 bits), Expect = 2.8e-34, Sum P(3) = 2.8e-34
Identities = 53/127 (41%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKMV+L +L G + L+FSQ LD++E Y +W+ ++ RL
Sbjct: 482 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYC-----------MWRN-YEYCRL 529
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG+T ERQ + +NEP N ++STRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 530 DGQTPHDERQDSINAYNEP-NSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 588
Query: 1079 AIYRAWR 1085
A+ RA R
Sbjct: 589 AMDRAHR 595
Score = 188 (71.2 bits), Expect = 2.8e-34, Sum P(3) = 2.8e-34
Identities = 57/171 (33%), Positives = 88/171 (51%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 305 LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADD 364
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F + F TN+ D K++ +R H++ L+ F+ R V+K LPPK I
Sbjct: 365 FDSWFD--------TNNCLGDQKLV-ERLHMV---LRPFLLRRIKADVEKSLPPKKEVKI 412
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
V LS +QR Y R L D+ N +K+R L + NHP
Sbjct: 413 YVGLSKMQREWYTRILMKDID-ILNSAGKMDKMR--LLNILMQLRKCCNHP 460
Score = 112 (44.5 bits), Expect = 2.8e-34, Sum P(3) = 2.8e-34
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 559 PSSIS-AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 617
PS + KL+ +QV G+ ++ + + G+ ILA MGLGKT Q I+ L
Sbjct: 172 PSYVKWGKLRDYQVRGLNWL----------ISLYENGINGILADEMGLGKTLQTISLLGY 221
Query: 618 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
N+ +++ P + LHNW EF +W P+
Sbjct: 222 MKHYRNIP-GPHMVLVPKSTLHNWMSEFKRWVPT 254
>UNIPROTKB|F1NYG8 [details] [associations]
symbol:F1NYG8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 EMBL:AADN02067869 EMBL:AADN02067866
EMBL:AADN02067867 EMBL:AADN02067868 IPI:IPI00682975
Ensembl:ENSGALT00000020603 OMA:PEINICL Uniprot:F1NYG8
Length = 879
Score = 258 (95.9 bits), Expect = 3.3e-34, Sum P(2) = 3.3e-34
Identities = 86/313 (27%), Positives = 143/313 (45%)
Query: 558 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 617
IP +I+ L+ +Q G +F++ + GCIL MGLGKT QVI+FL
Sbjct: 26 IPYTINRYLRGYQREGAQFLYWHYANK----------RGCILGDDMGLGKTVQVISFLAA 75
Query: 618 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWR 677
+ G R + N + + Q MK + S+ P + F++ V+ +L W+
Sbjct: 76 VLHKK--GTREDI----ENNMPEFLQRTMK-KESKCNPKKTFLI--VAP---LSVLYNWK 123
Query: 678 AKGGVFLIGYTAFRNLSFGKHVKDRNMARE-ICHA-----------LQD----GPDILVC 721
+ + GY L K D N ++ C L + G ++
Sbjct: 124 DELDTW--GYFKVSVLHGSKKEGDLNRIKQGKCEVALTTYETLRLYLDELNNIGWSAVIV 181
Query: 722 DEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRN 781
DE H IKN ++ TQ +K +KC RI LTG+ LQNN+ E +C++D+ G LGS F+
Sbjct: 182 DEVHRIKNPKSQITQTMKSLKCNVRIGLTGTILQNNMNELWCVMDWAVPGLLGSRVHFKK 241
Query: 782 RFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVK 841
+F +P+E GQ +T ++ + L ++ + R ++ LP K ++
Sbjct: 242 KFSDPLERGQRHTATKRELATGRKAMVKLARKMSSWFLRRTKVLISDQLPKKEDRMVYCS 301
Query: 842 LSPLQRRLYKRFL 854
L+ Q+ +Y+ L
Sbjct: 302 LTEFQKAVYRAVL 314
Score = 205 (77.2 bits), Expect = 3.3e-34, Sum P(2) = 3.3e-34
Identities = 56/140 (40%), Positives = 73/140 (52%)
Query: 952 TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKK 1011
T + YSGKM +L +L DK L+FS S LD++E Y
Sbjct: 410 TISDPKYSGKMRVLQQLLNHFRKNKDKVLLFSFSTKLLDVLEQYCIA------------S 457
Query: 1012 GKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW 1071
G D+ RLDG T+S +R ++V FN + L+ST AG LG+N AN VI+ D +W
Sbjct: 458 GLDFRRLDGSTKSEDRIRIVREFNRV--PEINICLVSTMAGGLGLNFVGANVVILFDPTW 515
Query: 1072 NPTYDLQAIYRAWR---CMD 1088
NP DLQAI RA+R C D
Sbjct: 516 NPANDLQAIDRAYRIGQCKD 535
>TAIR|locus:2050039 [details] [associations]
symbol:CHR34 "chromatin remodeling 34" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 EMBL:AC006841 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K10875 HOGENOM:HOG000029425 IPI:IPI00546951 PIR:D84601
RefSeq:NP_179740.1 UniGene:At.39568 ProteinModelPortal:Q9SJT3
SMR:Q9SJT3 PRIDE:Q9SJT3 EnsemblPlants:AT2G21450.1 GeneID:816684
KEGG:ath:AT2G21450 TAIR:At2g21450 InParanoid:Q9SJT3 OMA:FVFQYIS
PhylomeDB:Q9SJT3 ProtClustDB:CLSN2913149 ArrayExpress:Q9SJT3
Genevestigator:Q9SJT3 Uniprot:Q9SJT3
Length = 816
Score = 289 (106.8 bits), Expect = 5.8e-34, Sum P(3) = 5.8e-34
Identities = 73/244 (29%), Positives = 127/244 (52%)
Query: 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL 624
+++ HQ G RF+ N+ + D+ GCILAH G GKTF +I+FL + M +++
Sbjct: 264 EMRPHQTEGFRFLCNNL--------AADEPGGCILAHAPGSGKTFLLISFLQSFM-AMDP 314
Query: 625 GLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFL 684
R L+V P ++ +WK+EF W ++ L + ++ SR ++ ++L +W + +
Sbjct: 315 QARP-LVVLPKGIIESWKREFTLWEVEKIPLLDFYSVKAESRKQQLKVLGQWIKERSILF 373
Query: 685 IGYTAFRNLSFGKHVKDRNM--AREICHA-LQDGPDILVCDEAHMIKNTRADTTQALKQV 741
+GY F + + D N A E C L + P +L+ DE H +N +L +V
Sbjct: 374 LGYQQFTRI-----ICDDNFEAASEDCKLILLEKPTLLILDEGHTSRNKETYMLSSLARV 428
Query: 742 KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLG--SSHEFRNRFQNPIE--NGQHTNSTS 797
K +R++ LTG+ QNN+ E + ++D VR FL + E +R + E G+ N +S
Sbjct: 429 KTRRKVVLTGTLFQNNVEEVFNILDLVRPKFLKRPGTREIVSRIMSKAEIPRGKQVNQSS 488
Query: 798 EDVK 801
++
Sbjct: 489 SSIE 492
Score = 177 (67.4 bits), Expect = 5.8e-34, Sum P(3) = 5.8e-34
Identities = 45/133 (33%), Positives = 74/133 (55%)
Query: 961 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDG 1020
KM L++L +C + G+K LVFSQ I + +E +S + K W+ GK+ + + G
Sbjct: 621 KMKFFLNLLALCESTGEKLLVFSQYIVPIKTLERLMSSM-------KGWRLGKEMFTITG 673
Query: 1021 RTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAI 1080
+ + +R+ +ERFN L +V S +A GI+L A+RV+I+D NP+ QA+
Sbjct: 674 DSSNEQREWSMERFNNSLEAKV--FFGSIKACGEGISLVGASRVLILDVHLNPSVTQQAV 731
Query: 1081 YRAWRCMDKQSQF 1093
RA+R K+ +
Sbjct: 732 ARAYRPGQKRKVY 744
Score = 44 (20.5 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 17/56 (30%), Positives = 23/56 (41%)
Query: 617 TAMRSVNLGLRTALIVT----PVNVLHNWKQEFMKWRPSELKPLRVFM-LEDVSRD 667
T RS N + +LI N+LH K +F P L V + L + RD
Sbjct: 502 TLQRSTNFSAKASLIKDLREMTRNILHYHKADFSGLLPG-LSEFTVMLNLSSIQRD 556
Score = 39 (18.8 bits), Expect = 5.8e-34, Sum P(3) = 5.8e-34
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 24 KKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKC 58
K D N K++ D + + + K G+V C
Sbjct: 168 KVTVEDSQSNDHKQIEDCDHSFICKDDIGEVCRVC 202
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 225 (84.3 bits), Expect = 7.7e-34, Sum P(4) = 7.7e-34
Identities = 55/132 (41%), Positives = 75/132 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKMV L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 489 SGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYC-----------MWR-GYEYSRL 536
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG+T ER++ ++ FN P N ++STRAG LGINL SA+ VI+ D WNP DLQ
Sbjct: 537 DGQTPHEEREEAIDAFNAP-NSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQ 595
Query: 1079 AIYRAWRCMDKQ 1090
A+ RA R K+
Sbjct: 596 AMDRAHRIGQKK 607
Score = 180 (68.4 bits), Expect = 7.7e-34, Sum P(4) = 7.7e-34
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 312 LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 371
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F + F T + D K++ +R H + LK F+ R V+K LPPK I
Sbjct: 372 FDSWFD--------TKNCLGDQKLV-ERLHAV---LKPFLLRRIKTDVEKSLPPKKEIKI 419
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
+ LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 420 YLGLSKMQREWYTKILMKDID-VLNSSGKMDKMR--LLNILMQLRKCCNHP 467
Score = 115 (45.5 bits), Expect = 7.7e-34, Sum P(4) = 7.7e-34
Identities = 25/60 (41%), Positives = 33/60 (55%)
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
+ G+ ILA MGLGKT Q IA L N+ +++ P + LHNW EF +W PS
Sbjct: 203 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPS 261
Score = 38 (18.4 bits), Expect = 7.7e-34, Sum P(4) = 7.7e-34
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 550 EKGEEAVRIPSSISAKLKA 568
EKGE+ +I S KL A
Sbjct: 51 EKGEKKEKITSPFQLKLAA 69
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 201 (75.8 bits), Expect = 1.2e-33, Sum P(5) = 1.2e-33
Identities = 52/132 (39%), Positives = 73/132 (55%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
+GKMVLL +L + + L+FSQ LD++E YL +G + R+
Sbjct: 494 AGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMY------------RGYQYCRI 541
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T ER +E +N+P +++ L+STRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 542 DGNTGGDERDASIEAYNKPGSEKF-VFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 600
Query: 1079 AIYRAWRCMDKQ 1090
A RA R K+
Sbjct: 601 AQDRAHRIGQKK 612
Score = 170 (64.9 bits), Expect = 1.2e-33, Sum P(5) = 1.2e-33
Identities = 52/175 (29%), Positives = 87/175 (49%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
++ DEAH IKN + ++ ++ R+ +TG+PLQNNL E + +++F+ S+
Sbjct: 319 IIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAET 378
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F FQ EN Q +++ Q L++ L+ F+ R + V+K LPPK ++
Sbjct: 379 FDEWFQISGENDQQ--------EVVQQ----LHKVLRPFLLRRLKSDVEKGLPPKKETIL 426
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQ 891
V +S +Q++ YK L DL + V+ RK L + NHP + Q
Sbjct: 427 KVGMSQMQKQYYKALLQKDL-----EVVNGGGERKRLLNIAMQLRKCCNHPYLFQ 476
Score = 115 (45.5 bits), Expect = 1.2e-33, Sum P(5) = 1.2e-33
Identities = 46/146 (31%), Positives = 69/146 (47%)
Query: 547 VVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLG 606
+V G + P+ I KL+ +Q+ G+ ++ IR ++G G ILA MGLG
Sbjct: 175 IVGSGGTRLLTQPACIQGKLRDYQLAGLNWL-------IRLYENGING---ILADEMGLG 224
Query: 607 KTFQVIAFL-YT-AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDV 664
KT Q I+ L Y R +N G ++V P + L NW E ++ P L+ ++ +
Sbjct: 225 KTLQTISLLAYLHEYRGIN-GPH--MVVAPKSTLGNWMNEIRRFCPV-LRAVKFLGNPEE 280
Query: 665 SRDRRAELLAKWRAKGGVFLIGYTAF 690
R R ELL G F I T+F
Sbjct: 281 RRHIREELLV-----AGKFDICVTSF 301
Score = 68 (29.0 bits), Expect = 1.2e-33, Sum P(5) = 1.2e-33
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 482 DDAELGEETKRKIAIEKERQERLKSLQVQFSSK-SKLMNS--VTLDGDLS 528
DDAE EE + K I K + RLK +Q K ++++S ++D D++
Sbjct: 67 DDAEEDEEDEEKAEISKREKARLKEMQKMKKQKIQQILDSQNASIDADMN 116
Score = 47 (21.6 bits), Expect = 1.2e-33, Sum P(5) = 1.2e-33
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 290 GSDEADVVKDECSTKLEDHSVSPENINDAATD 321
GSDE DV DE + D V P +DA D
Sbjct: 44 GSDEEDVAPDEAP--VSDDEVVPVE-DDAEED 72
Score = 41 (19.5 bits), Expect = 1.9e-30, Sum P(4) = 1.9e-30
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 119 VEEIEDVDGNSDDPFVADAIANEKELA-LSEEQRKKFRKVKE 159
V +ED D D+ A +++E A L E Q+ K +K+++
Sbjct: 62 VVPVED-DAEEDEEDEEKAEISKREKARLKEMQKMKKQKIQQ 102
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 204 (76.9 bits), Expect = 1.5e-33, Sum P(3) = 1.5e-33
Identities = 55/137 (40%), Positives = 74/137 (54%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL +L G + L+F Q +D++E +L WK K + RL
Sbjct: 819 SGKFELLDRVLPKFKKSGHRVLMFFQMTQIMDIMEDFLR-----------WKDMK-YLRL 866
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T++ ERQ +++ FN P + C L+STRAG LG+NL +A+ VII D WNP DLQ
Sbjct: 867 DGSTKAEERQDMLKVFNAP-DSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQ 925
Query: 1079 AIYRAWRCMDKQSQFLL 1095
A RA R K +L
Sbjct: 926 AQDRAHRIGQKNEVRIL 942
Score = 199 (75.1 bits), Expect = 1.5e-33, Sum P(3) = 1.5e-33
Identities = 57/178 (32%), Positives = 88/178 (49%)
Query: 719 LVCDEAHMIKNTRADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN ++ +Q L+ K + R+ LTG+PLQNNL E + +++FV G S
Sbjct: 624 MIIDEGHRMKNAQSKLSQTLRTYYKTKNRLILTGTPLQNNLPELWALLNFVLPGIFNSVK 683
Query: 778 EFRNRFQNPIEN--GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV 835
F + F P N Q +E+ ++ R L++ L+ F+ R V+KDLP K
Sbjct: 684 SFDDWFNTPFANTGAQEKIELTEEESLLVIRR--LHKVLRPFLLRRLKKDVEKDLPDKVE 741
Query: 836 FVITVKLSPLQRRLYKRFLDLHG-FTNDRVSNEKIR-KSFFAGYQALAQIWNHPGILQ 891
V+ LS LQ LY++ L + F V K K L +I NHP + +
Sbjct: 742 KVLKCNLSGLQYVLYQQMLKHNALFVGADVGGAKSGIKGLNNKIMQLRKICNHPFVFE 799
Score = 111 (44.1 bits), Expect = 1.5e-33, Sum P(3) = 1.5e-33
Identities = 37/127 (29%), Positives = 61/127 (48%)
Query: 544 IVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTM 603
+ + ++EK E I + KLK +Q+ G+ +M V + L ILA M
Sbjct: 481 VAHRIKEKITEQPTI--LVGGKLKEYQMKGLEWM----------VSLYNNHLNGILADEM 528
Query: 604 GLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLED 663
GLGKT Q I+ + + + LI+ P++ + NW EF KW PS ++V + +
Sbjct: 529 GLGKTIQSISLVTYLIEKKHEN--KFLIIVPLSTITNWTLEFEKWAPS----IKVIVYKG 582
Query: 664 VSRDRRA 670
+ RR+
Sbjct: 583 SQQQRRS 589
Score = 41 (19.5 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 791 QHTNSTSEDVKIMNQ-RSHILYEQLKGFVQRMDMNVVKK 828
+ + S SE + + RSH L Q+ F Q + KK
Sbjct: 350 EKSTSRSEAKYVRDHYRSHYLVRQINNFHQTTEKEESKK 388
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 212 (79.7 bits), Expect = 1.8e-33, Sum P(4) = 1.8e-33
Identities = 53/173 (30%), Positives = 89/173 (51%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
L+ DEA IKN ++ QAL V+ +RR+ LTG+PLQN+LME + ++ F+ S +
Sbjct: 683 LILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPLQNSLMELWSLMHFLMPTIFSSHDD 742
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F++ F NP+ G + + ++ + L++ L+ F+ R V+K LP KT ++
Sbjct: 743 FKDWFSNPL-TGMMEGNMEFNAPLIGR----LHKVLRPFILRRLKKEVEKQLPEKTEHIV 797
Query: 839 TVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQ 891
LS QR LY F+ T + + + + Q L + NHP + +
Sbjct: 798 NCSLSKRQRYLYDDFMSRRS-TKENLKSGNMMSVLNIVMQ-LRKCCNHPNLFE 848
Score = 181 (68.8 bits), Expect = 1.8e-33, Sum P(4) = 1.8e-33
Identities = 46/131 (35%), Positives = 70/131 (53%)
Query: 956 LDYS-GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKD 1014
++Y GK+ L +L + L+F+Q LD+++ +LS G
Sbjct: 1183 IEYDCGKLQTLAVLLRQLYLYKHRCLIFTQMSKMLDVLQTFLSH------------HGYQ 1230
Query: 1015 WYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPT 1074
++RLDG T +RQ ++ERFN + +V C ++STR+G +G+NL A+ VI D WNPT
Sbjct: 1231 YFRLDGTTGVEQRQAMMERFNA--DPKVFCFILSTRSGGVGVNLTGADTVIFYDSDWNPT 1288
Query: 1075 YDLQAIYRAWR 1085
D QA R R
Sbjct: 1289 MDAQAQDRCHR 1299
Score = 137 (53.3 bits), Expect = 1.8e-33, Sum P(4) = 1.8e-33
Identities = 46/137 (33%), Positives = 70/137 (51%)
Query: 558 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 617
+P I +L+ +Q+VG+ +M V +K L ILA MGLGKT Q I+ L
Sbjct: 550 VPFLIRGQLREYQMVGLDWM----------VTLYEKNLNGILADEMGLGKTIQTISLLAH 599
Query: 618 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWR 677
S ++ LIV P +V+ NW+ EF KW P+ LK L F +++R AE W
Sbjct: 600 MACSESIW-GPHLIVVPTSVILNWEMEFKKWCPA-LKILTYF---GTAKER-AEKRKGWM 653
Query: 678 AKGGVFLIGYTAFRNLS 694
K F + T+++ ++
Sbjct: 654 -KPNCFHVCITSYKTVT 669
Score = 42 (19.8 bits), Expect = 1.8e-33, Sum P(4) = 1.8e-33
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 126 DGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMD 166
D SDD IAN ++ E+ R++ ++ E +MD
Sbjct: 380 DSESDDE---QTIANAEKSQKKEDVRQEVDALQNEATVDMD 417
Score = 39 (18.8 bits), Expect = 5.5e-19, Sum P(4) = 5.5e-19
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 940 QKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFY 995
+++ W+ L++ +LD S ++L N S F QS LD I+FY
Sbjct: 1469 KREEWDKNLNDTAVIDLDDSDSLLL---------NDPSTSADFYQSSSLLDEIKFY 1515
>WB|WBGene00013792 [details] [associations]
symbol:Y116A8C.13 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0033554 "cellular response to stress" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0033554 GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10877
GeneTree:ENSGT00700000105778 EMBL:AL117204 GeneID:190999
KEGG:cel:CELE_Y116A8C.13 CTD:190999 PIR:T31515
RefSeq:NP_001255913.1 ProteinModelPortal:Q9U2S8 SMR:Q9U2S8
PaxDb:Q9U2S8 EnsemblMetazoa:Y116A8C.13a UCSC:Y116A8C.13
WormBase:Y116A8C.13a HOGENOM:HOG000015986 InParanoid:Q9U2S8
OMA:KICNHPS NextBio:947616 ArrayExpress:Q9U2S8 Uniprot:Q9U2S8
Length = 833
Score = 180 (68.4 bits), Expect = 1.8e-33, Sum P(5) = 1.8e-33
Identities = 45/127 (35%), Positives = 71/127 (55%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK+ L+D++ + + +++ S I TLD+I+ L K+ RL
Sbjct: 516 SGKLTALVDMIKCFRLLQECTVIVSNYIETLDMIQQLCEYL-----NFKV-------LRL 563
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG+T+ +RQKLV FN+ + L+ST+AG +G+NL A+R+++ D WNP D Q
Sbjct: 564 DGKTQVPDRQKLVRTFNDHRDPS-NIFLLSTKAGGVGLNLIGASRLVLFDSDWNPANDQQ 622
Query: 1079 AIYRAWR 1085
A+ R WR
Sbjct: 623 AMARIWR 629
Score = 161 (61.7 bits), Expect = 1.8e-33, Sum P(5) = 1.8e-33
Identities = 40/127 (31%), Positives = 69/127 (54%)
Query: 528 SAGASIEVLGDAITGYIVN---VVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQS 584
S G+S + + I +I+N ++ K AV + + + L+ HQ GI+F+++ + +
Sbjct: 165 SGGSSSSTIQEKIPPFILNEQDILDRKTTSAVTVDTRFARHLRPHQKSGIQFIFDRLRRG 224
Query: 585 IRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTA---LIVTPVNVLHNW 641
K+G G G ILA MGLGK+ Q +A + ++ + A LI+ P ++++NW
Sbjct: 225 --SGKNGGGG-GAILADDMGLGKSLQTMAATWALLKGSKTAQQLANSCLIIVPSSLVNNW 281
Query: 642 KQEFMKW 648
K EF KW
Sbjct: 282 KAEFDKW 288
Score = 155 (59.6 bits), Expect = 1.8e-33, Sum P(5) = 1.8e-33
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 717 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 776
D++VCDE H +KN + L ++ RR+ LTG+P+QN+ E+Y ++DFVR GS
Sbjct: 338 DVMVCDEGHKLKNLDGKLRKTLLSLEIPRRLILTGTPMQNDFEEFYSLLDFVRPSVFGSI 397
Query: 777 HEFR 780
EFR
Sbjct: 398 VEFR 401
Score = 61 (26.5 bits), Expect = 1.8e-33, Sum P(5) = 1.8e-33
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 801 KIMNQRSHILYEQL-KGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGF 859
K+ + R L E + + ++R +V K LP K +++ SP+Q+ ++ D
Sbjct: 402 KMCSDRPEQLNELIDECMLRRTAADVDLKHLPEKHEYILFCAASPIQKHVHSEICDY--M 459
Query: 860 TNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 890
T D +S FFA Q+ NHP +L
Sbjct: 460 TGDALS-----LIFFA-----RQLANHPKLL 480
Score = 37 (18.1 bits), Expect = 1.8e-33, Sum P(5) = 1.8e-33
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 12 KLLEEGASGFLQKKIANDGSENGGKEVSDI 41
K L + ++ F+ I ++ S +GG S I
Sbjct: 144 KPLSKRSATFVPPLIGSESSSSGGSSSSTI 173
>UNIPROTKB|J9P3F5 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 Gene3D:1.25.40.10
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
EMBL:AAEX03026496 RefSeq:XP_549075.2 Ensembl:ENSCAFT00000036577
GeneID:491955 KEGG:cfa:491955 Uniprot:J9P3F5
Length = 1268
Score = 273 (101.2 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
Identities = 76/242 (31%), Positives = 120/242 (49%)
Query: 596 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKP 655
G ILA MGLGKT Q+IAFL + M L + L++ P N++ W +EF+KW P
Sbjct: 139 GGILADDMGLGKTVQIIAFL-SGMFDATL-VSHVLLIMPTNLISTWIKEFVKWTPG---- 192
Query: 656 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 715
+RV S+D R L + + + GV + Y N + + N +E
Sbjct: 193 MRVKTFHGSSKDERTRNLNRIQQRNGVIITTYQMLINN--WQQLSSLN-GQEFVW----- 244
Query: 716 PDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-FLG 774
D ++ DEAH IK + + + V + RI LTG+P+QNNL E + + DF +G LG
Sbjct: 245 -DYVILDEAHKIKTSSTKSAICARAVPARNRILLTGTPIQNNLQELWSLFDFACQGSLLG 303
Query: 775 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKKDLPPK 833
+ F+ ++NPI + ++T + + + S L +K F++R V KK P+
Sbjct: 304 TLKTFKIEYENPIMRAREKDATPGEKALGLKISENLMAIIKSHFLRRTKEEVQKKSSTPE 363
Query: 834 TV 835
+
Sbjct: 364 EI 365
Score = 184 (69.8 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
Identities = 51/151 (33%), Positives = 83/151 (54%)
Query: 945 NDLLH-EHTYKE--LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPR 1001
+D+ H +H + ++ SGKM+ L+++L + G ++LVFSQS L++IE L
Sbjct: 466 SDVDHIDHVTDDTLMEESGKMIFLIELLRRLRDEGHQTLVFSQSRQILNIIERLLKN--- 522
Query: 1002 PGKQGKLWKKGKDWYRLDGR-TESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHS 1060
+ K+ R+DG T ER+K + F + NK L++T+ G +G+ L +
Sbjct: 523 --RHFKI-------LRVDGTVTHLVEREKRIHLFQQ--NKDYSVFLLTTQVGGVGLTLTA 571
Query: 1061 ANRVIIVDGSWNPTYDLQAIYRAWRCMDKQS 1091
A RV+I D SWNP D QA+ R +R K++
Sbjct: 572 ATRVVIFDPSWNPATDAQAVDRVYRIGQKEN 602
>FB|FBgn0022787 [details] [associations]
symbol:Hel89B "Helicase 89B" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0006963 "positive regulation of antibacterial
peptide biosynthetic process" evidence=IMP] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0045087 "innate immune
response" evidence=IMP] [GO:0008063 "Toll signaling pathway"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0042742 GO:GO:0045087
GO:GO:0004003 GO:GO:0019730 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008063 GO:GO:0006963
InterPro:IPR022707 Pfam:PF12054 EMBL:AF033104
ProteinModelPortal:Q71V44 SMR:Q71V44 STRING:Q71V44 PaxDb:Q71V44
PRIDE:Q71V44 FlyBase:FBgn0022787 InParanoid:Q71V44
OrthoDB:EOG4ZGMT5 ArrayExpress:Q71V44 Bgee:Q71V44 Uniprot:Q71V44
Length = 1924
Score = 253 (94.1 bits), Expect = 4.0e-33, Sum P(3) = 4.0e-33
Identities = 51/138 (36%), Positives = 84/138 (60%)
Query: 720 VCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 779
V DE H+IKN + +++A+K++K R+ L+G+P+QNN++E + + DF+ GFLG+ +F
Sbjct: 1482 VLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQF 1541
Query: 780 RNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVIT 839
RF PI + + S++++ + L+ Q+ F+ R V KDLPPK +
Sbjct: 1542 VQRFSRPILSSRDAKSSAKEQEAGVLAMEALHRQVLPFLLRRVKEDVLKDLPPKITQDLL 1601
Query: 840 VKLSPLQRRLYKRFLDLH 857
+LSPLQ RLY+ F + H
Sbjct: 1602 CELSPLQLRLYEDFSNKH 1619
Score = 157 (60.3 bits), Expect = 4.0e-33, Sum P(3) = 4.0e-33
Identities = 47/150 (31%), Positives = 73/150 (48%)
Query: 948 LHEHTYKELDYSGKMVLLLDILTMC-------SNMGDKSLVFSQSIPTLDLIEFYLSKLP 1000
L + ++++S K+ L +L C S ++L+F Q LD++E L +
Sbjct: 1679 LSNSSLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDIVEQDLLRRH 1738
Query: 1001 RPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHS 1060
P + RLDG +S+RQ +V FN + + L++T G LG+NL
Sbjct: 1739 LPSVT---------YLRLDGSVPASQRQDIVNNFNS--DPSIDVLLLTTMVGGLGLNLTG 1787
Query: 1061 ANRVIIVDGSWNPTYDLQAIYRAWRCMDKQ 1090
A+ VI V+ WNP DLQA+ RA R K+
Sbjct: 1788 ADTVIFVEHDWNPMKDLQAMDRAHRIGQKK 1817
Score = 104 (41.7 bits), Expect = 4.0e-33, Sum P(3) = 4.0e-33
Identities = 36/125 (28%), Positives = 61/125 (48%)
Query: 557 RIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL- 615
++P IS +L+ +Q GI ++W + K L IL MGLGKT Q I L
Sbjct: 1342 KVPVPISVELRCYQQAGINWLW-----FLNKYN-----LHGILCDDMGLGKTLQTICILA 1391
Query: 616 --YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW--RPSELKPLRVFMLEDVSRDR-RA 670
+ ++ NL +L++ P + +W E K+ + S L+PL + V R++ R+
Sbjct: 1392 GDHMHRQTANLANLPSLVICPPTLTGHWVYEVEKFLDQGSVLRPLHYYGFP-VGREKLRS 1450
Query: 671 ELLAK 675
++ K
Sbjct: 1451 DIGTK 1455
Score = 37 (18.1 bits), Expect = 1.0e-20, Sum P(3) = 1.0e-20
Identities = 9/30 (30%), Positives = 10/30 (33%)
Query: 894 KDKGYPSRXXXXXXXXXXNMDYNVVIGEKP 923
KDKG S M N +I P
Sbjct: 1872 KDKGAESGSSAVQGTASGGMSMNTIIENLP 1901
>RGD|1565734 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent repair
deficiency complementation group 6 - like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1565734 GO:GO:0005524 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
OrthoDB:EOG4FR0RD EMBL:CH473966 IPI:IPI00362012
RefSeq:NP_001092144.1 UniGene:Rn.72855 Ensembl:ENSRNOT00000004310
GeneID:317252 KEGG:rno:317252 UCSC:RGD:1565734 NextBio:671491
Uniprot:D4A0G9
Length = 1230
Score = 263 (97.6 bits), Expect = 4.5e-33, Sum P(3) = 4.5e-33
Identities = 73/240 (30%), Positives = 122/240 (50%)
Query: 596 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKP 655
G ILA MGLGKT Q+IAFL + M +L + L++ P N+++ W +EF KW P
Sbjct: 117 GGILADDMGLGKTVQIIAFL-SGMFDASL-VNHVLLIMPTNLINTWVKEFAKWTPG---- 170
Query: 656 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 715
+RV S++ R L + + + GV + Y L+ + + N +
Sbjct: 171 MRVKTFHGSSKNERIRNLTRIQQRNGVVITTYQML--LNNWQQLASFNGQAFVW------ 222
Query: 716 PDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-FLG 774
D ++ DEAH IK+ + + V R+ LTG+P+QNNL E + + DF +G LG
Sbjct: 223 -DYVILDEAHKIKSASTKSAVCARAVPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLG 281
Query: 775 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRM--DMNVVKKDLP 831
+ F+ ++NPI + ++T + + + S L E +K F++R ++++ K D P
Sbjct: 282 TLKTFKMEYENPIIRAREKDATPGEKALGFKMSENLMEIIKPYFLRRTKEEVHMKKADKP 341
Score = 185 (70.2 bits), Expect = 4.5e-33, Sum P(3) = 4.5e-33
Identities = 49/134 (36%), Positives = 76/134 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKM+ L+ +L + G ++LVFSQS L++IE L + K +K R+
Sbjct: 461 SGKMIFLMALLERLQDEGHQTLVFSQSRQILNIIERLL--------KNKHFKT----LRI 508
Query: 1019 DGR-TESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDL 1077
DG T ER+K ++ F + NK L++T+ G +G+ L +A+RV+I D SWNP D
Sbjct: 509 DGTVTHLWEREKRIQLFQQ--NKEYSVFLLTTQVGGVGLTLTAASRVVIFDPSWNPATDA 566
Query: 1078 QAIYRAWRCMDKQS 1091
QA+ R +R K++
Sbjct: 567 QAVDRVYRIGQKEN 580
Score = 58 (25.5 bits), Expect = 4.5e-33, Sum P(3) = 4.5e-33
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 830 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIR-KSFFAGYQALAQIWNHPG 888
L K ++ ++L PLQ +Y++F+ L D + + +S A L ++ +HP
Sbjct: 361 LTRKNDLIVWIRLVPLQEEIYRKFVSL-----DHIKELLMETRSPLAELGVLKKLCDHPR 415
Query: 889 IL 890
+L
Sbjct: 416 LL 417
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 223 (83.6 bits), Expect = 6.3e-33, Sum P(3) = 6.3e-33
Identities = 57/134 (42%), Positives = 76/134 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKMV+L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 498 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC-----------MWR-GYEYCRL 545
Query: 1019 DGRTESSERQK--LVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1076
DG+T ER+K +E FN P N ++STRAG LGINL SA+ VI+ D WNP D
Sbjct: 546 DGQTPHEEREKKEAIEAFNAP-NSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVD 604
Query: 1077 LQAIYRAWRCMDKQ 1090
LQA+ RA R K+
Sbjct: 605 LQAMDRAHRIGQKK 618
Score = 170 (64.9 bits), Expect = 6.3e-33, Sum P(3) = 6.3e-33
Identities = 54/172 (31%), Positives = 86/172 (50%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 320 LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 379
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F + F T + D K++ +R H + LK F+ R V+K LPPK +
Sbjct: 380 FDSWFD--------TKNCLGDQKLV-ERLHAV---LKPFLLRRIKTDVEKSLPPKKEIKV 427
Query: 839 TVKLSPLQRRL-YKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
+ LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 428 YLGLSKMQREWWYTKILMKDID-VLNSAGKMDKMR--LLNILMQLRKCCNHP 476
Score = 111 (44.1 bits), Expect = 6.3e-33, Sum P(3) = 6.3e-33
Identities = 30/82 (36%), Positives = 41/82 (50%)
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
+ G+ ILA MGLGKT Q IA L N+ +++ P + L+NW EF +W PS
Sbjct: 211 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLYNWMNEFKRWVPS 269
Query: 652 ELKPLRVFMLEDVSRDRRAELL 673
LRV +D RA +
Sbjct: 270 ----LRVICFVG-DKDARAAFI 286
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 195 (73.7 bits), Expect = 6.4e-33, Sum P(3) = 6.4e-33
Identities = 52/127 (40%), Positives = 70/127 (55%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL G + L+F Q ++++E YL + W+ + RL
Sbjct: 735 SGKFELLDRILPKLFRSGHRILMFFQMTQIMNIMEDYLHY--------RQWR----YLRL 782
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T++ +R KL+ FN+P V L+STRAG LG+NL +A+ VII D WNP DLQ
Sbjct: 783 DGSTKADDRSKLLGVFNDP-TAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQ 841
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 842 AQDRAHR 848
Score = 195 (73.7 bits), Expect = 6.4e-33, Sum P(3) = 6.4e-33
Identities = 58/180 (32%), Positives = 90/180 (50%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQR-RIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KNT++ T L R R+ LTG+PLQNNL E + +++FV S
Sbjct: 541 MIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWALLNFVLPRIFNSIK 600
Query: 778 EFRNRFQNPIEN--GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV 835
F F P N GQ +E+ ++ R L++ L+ F+ R V+ +LP K
Sbjct: 601 SFDEWFNTPFANTGGQDKMELTEEESLLVIRR--LHKVLRPFLLRRLKKDVEAELPDKVE 658
Query: 836 FVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ----ALAQIWNHPGILQ 891
VI ++S LQ++LY + + HG V + K K+ G Q L +I NHP + +
Sbjct: 659 KVIRCQMSGLQQKLYYQ-MKKHGMLY--VEDAKRGKTGIKGLQNTVMQLKKICNHPFVFE 715
Score = 117 (46.2 bits), Expect = 6.4e-33, Sum P(3) = 6.4e-33
Identities = 36/110 (32%), Positives = 52/110 (47%)
Query: 546 NVVREKGEEAVRIPSS-ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMG 604
NV E PS + KLK +Q+ G+++M + + L ILA MG
Sbjct: 396 NVAHNIREVVTEQPSILVGGKLKEYQLRGLQWM----------ISLYNNHLNGILADEMG 445
Query: 605 LGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELK 654
LGKT Q I+ L T + L++ P++ L NW EF +W PS +K
Sbjct: 446 LGKTIQTIS-LITHLIEKKRQNGPFLVIVPLSTLTNWTMEFERWAPSIVK 494
Score = 41 (19.5 bits), Expect = 4.1e-09, Sum P(3) = 4.1e-09
Identities = 13/59 (22%), Positives = 31/59 (52%)
Query: 92 TDFSSNCPNMWKFRSIITYRLCKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQ 150
T +N P +W +++ + L ++ S++ ++ + PF A+ +K + L+EE+
Sbjct: 575 TPLQNNLPELW---ALLNFVLPRIFNSIKSFDEW---FNTPF-ANTGGQDK-MELTEEE 625
Score = 39 (18.8 bits), Expect = 7.8e-17, Sum P(3) = 7.8e-17
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 654 KPLRVFMLEDVSRDRRAEL 672
K LR F+L + +D AEL
Sbjct: 635 KVLRPFLLRRLKKDVEAEL 653
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 206 (77.6 bits), Expect = 7.1e-33, Sum P(4) = 7.1e-33
Identities = 54/178 (30%), Positives = 89/178 (50%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN T+ L + +CQRR+ +TG+PLQN L E + +++F+ S
Sbjct: 490 MIIDEGHRLKNQHCKLTEMLNTRFQCQRRLLITGTPLQNKLPELWALLNFLLPSIFSSCS 549
Query: 778 EFRNRFQNPIEN-GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ T E+ ++ +R H + L+ F+ R V+ +LP K F
Sbjct: 550 TFEQWFNAPFATTGEKVELTQEETMLIIRRLH---KVLRPFLLRRLKKEVESELPDKMEF 606
Query: 837 VITVKLSPLQRRLYKRF---LDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQ 891
V+ +S LQ+ LYK L L G TN ++ +R + L ++ NHP + +
Sbjct: 607 VVRCDMSALQKVLYKHMQKGLLLDGKTN--TGSKSLRNTMIH----LRKLCNHPFLFE 658
Score = 187 (70.9 bits), Expect = 7.1e-33, Sum P(4) = 7.1e-33
Identities = 51/131 (38%), Positives = 71/131 (54%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK+ LL IL G + L+F Q + ++E +L+ G G + + RL
Sbjct: 682 SGKLELLSRILPKLQATGHRVLMFFQMTSMMTIVEDFLA-----G--GTI-----QYLRL 729
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T+ ER L+++FN P N ++STRAG LG+NL +A+ VII D WNP D+Q
Sbjct: 730 DGSTKPDERGALLDKFNAP-NSEYFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQ 788
Query: 1079 AIYRAWRCMDK 1089
A RA R K
Sbjct: 789 AQDRAHRIGQK 799
Score = 121 (47.7 bits), Expect = 7.1e-33, Sum P(4) = 7.1e-33
Identities = 31/86 (36%), Positives = 45/86 (52%)
Query: 563 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV 622
S KLK +Q+ G+ +M V + L ILA MGLGKT Q IAF+ T + +
Sbjct: 363 SLKLKPYQIKGLEWM----------VSLFNNNLNGILADEMGLGKTIQTIAFI-TYLMEI 411
Query: 623 NLGLRTALIVTPVNVLHNWKQEFMKW 648
L++ P++ + NW+ EF KW
Sbjct: 412 KKTSGPFLVIVPLSTVPNWQNEFDKW 437
Score = 48 (22.0 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 97 NCPNMWKFRSIITYRLCKVSGSVE 120
+C N W R I L +VSG +E
Sbjct: 663 SCRNFWDARFISAVDLYRVSGKLE 686
Score = 41 (19.5 bits), Expect = 7.1e-33, Sum P(4) = 7.1e-33
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 206 DASKSLSNKKTDDGDMPGNNNEVALQNLET---GVLESSVKERSLSNG 250
D KS+ +K +D D N ++ +++ T GV E +KE+ G
Sbjct: 312 DKVKSILDKARNDDDEYENKTKMNIEDYYTTAHGVREE-IKEQHFMMG 358
>UNIPROTKB|I3LFY4 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001440
InterPro:IPR001650 InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271
Pfam:PF00515 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
OMA:TKNGDLE EMBL:CU469343 Ensembl:ENSSSCT00000023457 Uniprot:I3LFY4
Length = 1225
Score = 270 (100.1 bits), Expect = 7.2e-33, Sum P(2) = 7.2e-33
Identities = 74/235 (31%), Positives = 119/235 (50%)
Query: 596 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKP 655
G ILA MGLGKT Q+IAFL + M +L + L++ P +++ W +EF+KW P
Sbjct: 95 GGILADDMGLGKTVQIIAFL-SGMFDASL-VNHVLLIMPTSLISTWLREFVKWTPG---- 148
Query: 656 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 715
+RV S+D R L++ + + GV + Y N + + N RE
Sbjct: 149 MRVKTFHGPSKDERTRNLSRIQQRNGVIITTYQMLINN--WQQLSSLN-GREFVW----- 200
Query: 716 PDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-FLG 774
D ++ DEAH IK + + + + + RI LTG+P+QNNL E + + DF +G LG
Sbjct: 201 -DYVILDEAHKIKTSSTKSAICARAIPARNRILLTGTPIQNNLQELWSLFDFACQGSLLG 259
Query: 775 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKK 828
+ F+ ++NPI + ++T + + + S L +K F++R V KK
Sbjct: 260 TLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEEVQKK 314
Score = 184 (69.8 bits), Expect = 7.2e-33, Sum P(2) = 7.2e-33
Identities = 48/137 (35%), Positives = 76/137 (55%)
Query: 956 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
++ SGKM L+D+L + G ++LVFSQS L+++E L + K+
Sbjct: 436 MEESGKMTFLMDLLKRLRDEGHQTLVFSQSRQILNILERLLKN-----RHFKI------- 483
Query: 1016 YRLDGR-TESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPT 1074
R+DG T ER+K + F + NK L++T+ G +G+ L +A+RV+I D SWNP
Sbjct: 484 LRIDGTITHLVEREKRISLFQQ--NKDYSVFLLTTQVGGVGLTLTAASRVVIFDPSWNPA 541
Query: 1075 YDLQAIYRAWRCMDKQS 1091
D QA+ R +R K++
Sbjct: 542 TDAQAVDRVYRIGQKEN 558
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 219 (82.2 bits), Expect = 1.1e-32, Sum P(4) = 1.1e-32
Identities = 56/132 (42%), Positives = 73/132 (55%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKMV+L +L G + L+FSQ LD++E Y +W+ + RL
Sbjct: 465 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYC-----------MWRN-YGYCRL 512
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG+T ERQ + FNEP N ++STRAG LGINL +A+ VII D WNP DLQ
Sbjct: 513 DGQTPHEERQISINAFNEP-NSSKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQVDLQ 571
Query: 1079 AIYRAWRCMDKQ 1090
A+ RA R K+
Sbjct: 572 AMDRAHRIGQKK 583
Score = 179 (68.1 bits), Expect = 1.1e-32, Sum P(4) = 1.1e-32
Identities = 56/171 (32%), Positives = 85/171 (49%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ SS +
Sbjct: 288 LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSED 347
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F F TN+ D K++ +R H + L+ F+ R V+K L PK I
Sbjct: 348 FDAWFD--------TNNCLGDTKLV-ERLHTV---LRPFLLRRIKADVEKSLLPKKEIKI 395
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
V LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 396 YVGLSKMQREWYTKILMKDID-ILNSAGKMDKMR--LLNVLMQLRKCCNHP 443
Score = 110 (43.8 bits), Expect = 1.1e-32, Sum P(4) = 1.1e-32
Identities = 30/94 (31%), Positives = 48/94 (51%)
Query: 559 PSSI-SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 617
PS + + KL+ +QV G+ ++ + + G+ ILA MGLGKT Q I+ L
Sbjct: 155 PSYVKTGKLRDYQVRGLNWL----------ISLYENGINGILADEMGLGKTLQTISLLGY 204
Query: 618 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
N+ +++ P + L+NW EF +W PS
Sbjct: 205 MKHYRNIP-GPHMVLVPKSTLYNWMNEFKRWVPS 237
Score = 39 (18.8 bits), Expect = 1.1e-32, Sum P(4) = 1.1e-32
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 28 NDGSENGGKEVSDINWNS 45
+D SENG E SD +S
Sbjct: 27 DDTSENGHDEASDTAMDS 44
>POMBASE|SPAC22F3.03c [details] [associations]
symbol:rdh54 "ATP-dependent DNA helicase Rdh54"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC;IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
PomBase:SPAC22F3.03c GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0004003
GO:GO:0000724 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007131 KO:K10877 EMBL:AY293737 PIR:S62418
PIR:T38188 RefSeq:NP_593038.2 ProteinModelPortal:Q09772
IntAct:Q09772 STRING:Q09772 EnsemblFungi:SPAC22F3.03c.1
GeneID:2541798 KEGG:spo:SPAC22F3.03c OMA:NTENTRT OrthoDB:EOG4CVKG1
NextBio:20802886 Uniprot:Q09772
Length = 811
Score = 279 (103.3 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 80/270 (29%), Positives = 134/270 (49%)
Query: 591 GDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMK-WR 649
G G ILA MGLGKT Q I ++T ++ R++ I + V +K W
Sbjct: 225 GKCGYSAILADEMGLGKTLQTITVVWTLLKQSYYANRSSTINNAMVVA---PVTLLKNWE 281
Query: 650 PSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREIC 709
L + V R AE ++ + +I T + + ++++ +I
Sbjct: 282 NEFYNWLGHERIH-VYIARCAEDFQEFTSNKTYSII-ITGYETVC--TYLRNYGCGIDI- 336
Query: 710 HALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 769
D+L+CDEAH +K+ + T L ++K ++R+ LTG+PLQN+L EY+ MV+F+
Sbjct: 337 -------DLLICDEAHRLKSMSSQTWITLNKLKTRKRLLLTGTPLQNDLSEYFSMVNFII 389
Query: 770 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD 829
G LG+ + F+ +++ PI + N++S D+ + R L+E F R N++ K
Sbjct: 390 PGSLGTPNSFKAQYERPILRSRSMNASSRDISLGAARLQRLFEFTSNFTLRRKANILAKH 449
Query: 830 LPPKTVFVITVKLSPLQRRLYKRFLDLHGF 859
LPP+T V+ +K + Q +Y LD GF
Sbjct: 450 LPPRTDIVLFIKPTHQQENVYGHVLD--GF 477
Score = 167 (63.8 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 50/154 (32%), Positives = 77/154 (50%)
Query: 946 DLLHEHTYKE---LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRP 1002
+L +H +++ L S K+ +L +L K+++ SQ TL+LIE +LS L
Sbjct: 515 ELQDKHVFEQENMLLSSSKLQILAALLKSFQRGCQKAVIVSQYKETLELIELFLSILH-- 572
Query: 1003 GKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSAN 1062
+ +L G T SER +V FN K L+S++AG G+NL +
Sbjct: 573 ----------VRFCKLLGSTPFSERDLIVHNFNTSSFKEFSVLLLSSKAGGCGLNLTGST 622
Query: 1063 RVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLLT 1096
R+II + SWNP DLQA+ R +R K+ + T
Sbjct: 623 RLIIYEPSWNPAQDLQALSRIYRSGQKRPVCIYT 656
Score = 133 (51.9 bits), Expect = 6.1e-17, Sum P(2) = 6.1e-17
Identities = 33/98 (33%), Positives = 50/98 (51%)
Query: 556 VRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL 615
V I +S L +HQ G+ F+++ ++ G G ILA MGLGKT Q I +
Sbjct: 195 VVIDPFLSKHLYSHQREGVSFLYDCLLGM-----EGKCGYSAILADEMGLGKTLQTITVV 249
Query: 616 YTAMRS---VNLG--LRTALIVTPVNVLHNWKQEFMKW 648
+T ++ N + A++V PV +L NW+ EF W
Sbjct: 250 WTLLKQSYYANRSSTINNAMVVAPVTLLKNWENEFYNW 287
>UNIPROTKB|Q2NKX8 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0000777 "condensed chromosome kinetochore" evidence=IEA]
[GO:0000087 "M phase of mitotic cell cycle" evidence=TAS]
[GO:0000236 "mitotic prometaphase" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_115566 Reactome:REACT_21300
GO:GO:0051301 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000236 GO:GO:0000777 CTD:54821 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OMA:TKNGDLE EMBL:EU069463 EMBL:BC008808
EMBL:BC111486 EMBL:AK000112 EMBL:AK074719 EMBL:AY121802
IPI:IPI00552569 RefSeq:NP_060139.2 UniGene:Hs.47558
ProteinModelPortal:Q2NKX8 SMR:Q2NKX8 IntAct:Q2NKX8 STRING:Q2NKX8
PhosphoSite:Q2NKX8 DMDM:121948339 PaxDb:Q2NKX8 PeptideAtlas:Q2NKX8
PRIDE:Q2NKX8 DNASU:54821 Ensembl:ENST00000334463 GeneID:54821
KEGG:hsa:54821 UCSC:uc004eap.1 GeneCards:GC0XM071424
H-InvDB:HIX0016867 HGNC:HGNC:20794 HPA:HPA050492 MIM:300687
neXtProt:NX_Q2NKX8 PharmGKB:PA162385290 InParanoid:Q2NKX8
GenomeRNAi:54821 NextBio:57573 ArrayExpress:Q2NKX8 Bgee:Q2NKX8
CleanEx:HS_ERCC6L Genevestigator:Q2NKX8 Uniprot:Q2NKX8
Length = 1250
Score = 265 (98.3 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 73/235 (31%), Positives = 120/235 (51%)
Query: 596 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKP 655
G ILA MGLGKT Q+IAFL + M +L + L++ P N+++ W +EF+KW P
Sbjct: 117 GGILADDMGLGKTVQIIAFL-SGMFDASL-VNHVLLIMPTNLINTWVKEFIKWTPG---- 170
Query: 656 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 715
+RV S+D R L + + + GV + Y N ++ + R +E
Sbjct: 171 MRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLIN-NWQQLSSFRG--QEFVW----- 222
Query: 716 PDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-FLG 774
D ++ DEAH IK + + + + R+ LTG+P+QNNL E + + DF +G LG
Sbjct: 223 -DYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLG 281
Query: 775 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKK 828
+ F+ ++NPI + ++T + + + S L +K F++R +V KK
Sbjct: 282 TLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDVQKK 336
Score = 187 (70.9 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 49/137 (35%), Positives = 77/137 (56%)
Query: 956 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
++ SGKM+ L+D+L + G ++LVFSQS L++IE L + + +K
Sbjct: 456 MEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLL--------KNRHFKT---- 503
Query: 1016 YRLDGR-TESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPT 1074
R+DG T ER+K + F + NK L++T+ G +G+ L +A RV+I D SWNP
Sbjct: 504 LRIDGTVTHLLEREKRINLFQQ--NKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPA 561
Query: 1075 YDLQAIYRAWRCMDKQS 1091
D QA+ R +R K++
Sbjct: 562 TDAQAVDRVYRIGQKEN 578
>MGI|MGI:2654144 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent
repair deficiency complementation group 6 like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 MGI:MGI:2654144
GO:GO:0005524 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
CTD:54821 GeneTree:ENSGT00590000083118 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD EMBL:AY172688 EMBL:AK029015
EMBL:AK045113 EMBL:AK084617 EMBL:AK084618 EMBL:AL807784
EMBL:BC037660 IPI:IPI00221889 RefSeq:NP_666347.2 UniGene:Mm.31911
ProteinModelPortal:Q8BHK9 SMR:Q8BHK9 IntAct:Q8BHK9 STRING:Q8BHK9
PhosphoSite:Q8BHK9 PaxDb:Q8BHK9 PRIDE:Q8BHK9
Ensembl:ENSMUST00000056904 GeneID:236930 KEGG:mmu:236930
UCSC:uc009tyk.2 InParanoid:Q8BHK9 NextBio:383173 Bgee:Q8BHK9
Genevestigator:Q8BHK9 Uniprot:Q8BHK9
Length = 1240
Score = 251 (93.4 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 71/240 (29%), Positives = 118/240 (49%)
Query: 596 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKP 655
G ILA MGLGKT Q+IAFL + M +L + L++ P N+++ W EF KW P
Sbjct: 118 GGILADDMGLGKTVQIIAFL-SGMFDASL-VNHVLLIMPTNLINTWVNEFAKWTPG---- 171
Query: 656 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 715
+RV S+ R L + + + GV + Y L+ + + N +
Sbjct: 172 MRVKTFHGSSKSERTRSLTRIQQRNGVVITTYQML--LNNWQQLASFNGQAFVW------ 223
Query: 716 PDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-FLG 774
D ++ DEAH IK+ + + + R+ LTG+P+QNNL E + + DF +G LG
Sbjct: 224 -DYVILDEAHKIKSASTKSAVCARAIPASNRLLLTGTPVQNNLQELWSLFDFACQGSLLG 282
Query: 775 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRM--DMNVVKKDLP 831
+ F+ +++PI + ++T + + + S L E +K F++R ++ K D P
Sbjct: 283 TLKTFKMEYEHPIIRAREKDATPGEKALGLKISENLMEIIKPYFLRRTKEEVQTKKADNP 342
Score = 193 (73.0 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 50/134 (37%), Positives = 76/134 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKM+ L+ +L + G ++LVFSQSI L++IE L + K +K R+
Sbjct: 462 SGKMIFLMSLLERLQDEGHQTLVFSQSIKILNIIERLL--------KNKHFKT----LRI 509
Query: 1019 DGR-TESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDL 1077
DG T ER+K ++ F + NK L++T+ G +G+ L +A RV+I D SWNP D
Sbjct: 510 DGTVTHLWEREKRIQLFQQ--NKEYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDA 567
Query: 1078 QAIYRAWRCMDKQS 1091
QA+ R +R K++
Sbjct: 568 QAVDRVYRIGQKEN 581
Score = 58 (25.5 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 830 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIR-KSFFAGYQALAQIWNHPG 888
L K ++ ++L PLQ +Y++F+ L D + + +S A L ++ +HP
Sbjct: 362 LARKNDLIVWIRLLPLQEEIYRKFVSL-----DHIKELLMETRSPLAELGVLKKLCDHPR 416
Query: 889 IL 890
+L
Sbjct: 417 LL 418
>UNIPROTKB|F1NAD2 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0000729 "DNA double-strand
break processing" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051304 "chromosome
separation" evidence=IEA] [GO:0070932 "histone H3 deacetylation"
evidence=IEA] [GO:0070933 "histone H4 deacetylation" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000018 GeneTree:ENSGT00630000089890
GO:GO:0051304 OMA:KNQRGIQ EMBL:AADN02016061 EMBL:AADN02016062
EMBL:AADN02016063 EMBL:AADN02016064 EMBL:AADN02016065
EMBL:AADN02016066 EMBL:AADN02016067 IPI:IPI00583150
Ensembl:ENSGALT00000016936 Uniprot:F1NAD2
Length = 963
Score = 276 (102.2 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 122/411 (29%), Positives = 185/411 (45%)
Query: 594 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 653
GL ILA MGLGKT Q IAFL + + G LIV P + L NW +E W P EL
Sbjct: 451 GLNGILADEMGLGKTIQAIAFLAHIYQEGDRGPH--LIVVPASTLDNWIREVNLWCP-EL 507
Query: 654 KPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 713
L ++ S++ R L A + F + T + N + DR++ R++ L
Sbjct: 508 NVLFYYV---GSQEDRKHLRADISNRVVDFNVIVTTY-NCAISSS-DDRSLFRKV--KL- 559
Query: 714 DGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-F 772
+ + DE HM+KN + Q L ++ + R+ LTG+P+QNNL+E +++FV F
Sbjct: 560 ---NYAIFDEGHMLKNMSSVRYQQLMRINAKHRLLLTGTPVQNNLLELMSLLNFVMPHMF 616
Query: 773 LGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP 832
S+ E R F + + + ST E +I + + I K F+ R + V K LPP
Sbjct: 617 SSSTSEIRRMFSSKAKTAEE-QSTYEKERIAHAKQII-----KPFILRRVKDEVLKQLPP 670
Query: 833 KTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQ- 891
K + +S Q +LY L+ NEK A Q L ++ NHP + +
Sbjct: 671 KKDHIELCAMSEKQEQLYCDLLNK--LKKTMKGNEKNSDMGNAMMQ-LRKMANHPLLHRH 727
Query: 892 -LTKDKGYPSRXXXXXXXXXXNMDYNV-VIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLH 949
T DK + D N +I E M DF + K + H
Sbjct: 728 YYTADK--LKTMSKLMLKEPTHCDANPDLIFEDMTVMTDF-----ELHLLCKQY----SH 776
Query: 950 EHTYK-ELDY---SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYL 996
+K ++D SGK +L +L+ GD+ ++FSQ LD++E +L
Sbjct: 777 VSDFKLDMDQILDSGKFRVLERLLSDLKEKGDRVVLFSQFTMVLDILEVFL 827
Score = 172 (65.6 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 51/130 (39%), Positives = 73/130 (56%)
Query: 956 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
LD SGK +L +L+ GD+ ++FSQ LD++E +L K W+ +
Sbjct: 788 LD-SGKFRVLERLLSDLKEKGDRVVLFSQFTMVLDILEVFL----------KHWQHR--Y 834
Query: 1016 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1075
RLDG+T+ S+R L++ FN ++ + L+ST+AG LGINL SAN VI+ D NP
Sbjct: 835 IRLDGKTQISDRIHLIDEFNTDMD--IFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 892
Query: 1076 DLQAIYRAWR 1085
D QA R R
Sbjct: 893 DKQAEDRCHR 902
Score = 121 (47.7 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 44/143 (30%), Positives = 66/143 (46%)
Query: 534 EVLGDAITGYIVNVVREKG-EEAVRIPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKS 590
E + + +T + + + G + PS + S +LK +Q +G+ W ++
Sbjct: 398 EEISNKLTKQVTKITEDGGCRWNIEQPSVLNQSLELKPYQKIGLN--WLALLHK------ 449
Query: 591 GDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP 650
GL ILA MGLGKT Q IAFL + + G LIV P + L NW +E W P
Sbjct: 450 --HGLNGILADEMGLGKTIQAIAFLAHIYQEGDRGPH--LIVVPASTLDNWIREVNLWCP 505
Query: 651 SELKPLRVFMLEDVSRDR-RAEL 672
EL L ++ R RA++
Sbjct: 506 -ELNVLFYYVGSQEDRKHLRADI 527
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 212 (79.7 bits), Expect = 1.6e-32, Sum P(3) = 1.6e-32
Identities = 52/127 (40%), Positives = 71/127 (55%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKMV L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 444 SGKMVALDKLLPKVQEQGSRVLIFSQMTRVLDILEDYC-----------MWR-GFEYCRL 491
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T R++ ++ FN P N ++STRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 492 DGNTPHEAREQAIDAFNAP-NSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 550
Query: 1079 AIYRAWR 1085
A+ RA R
Sbjct: 551 AMDRAHR 557
Score = 175 (66.7 bits), Expect = 1.6e-32, Sum P(3) = 1.6e-32
Identities = 56/171 (32%), Positives = 85/171 (49%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ ++ ++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 268 LVIDEAHRIKNEKSKLSEIAREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSASD 327
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F + F TN D K++ +R H + L+ F+ R V+K LPPK I
Sbjct: 328 FDSWFD--------TNCLG-DQKLV-ERLHAV---LRPFLLRRIKAEVEKSLPPKKEVKI 374
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
+ LS +QR Y R L D+ N +K+R L + NHP
Sbjct: 375 YLGLSKMQREWYTRILMKDID-ILNSAGKMDKMR--LLNILMQLRKCCNHP 422
Score = 113 (44.8 bits), Expect = 1.6e-32, Sum P(3) = 1.6e-32
Identities = 24/60 (40%), Positives = 33/60 (55%)
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
+ G+ ILA MGLGKT Q IA L N+ +++ P + LHNW EF +W P+
Sbjct: 159 ENGINGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPT 217
>UNIPROTKB|F5H493 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0007256 "activation of JNKK
activity" evidence=IEA] [GO:0007257 "activation of JUN kinase
activity" evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IEA] [GO:0009636
"response to toxic substance" evidence=IEA] [GO:0010165 "response
to X-ray" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0003677 GO:GO:0009636 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
EMBL:AC073366 GO:GO:0006290 GO:GO:0007256 EMBL:AL138760
HGNC:HGNC:3438 ChiTaRS:ERCC6 GO:GO:0000303 IPI:IPI01012579
ProteinModelPortal:F5H493 SMR:F5H493 Ensembl:ENST00000542458
UCSC:uc009xod.3 ArrayExpress:F5H493 Bgee:F5H493 Uniprot:F5H493
Length = 863
Score = 230 (86.0 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
Identities = 57/173 (32%), Positives = 96/173 (55%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
++ DE H I+N A T A KQ + RI L+GSP+QNNL E + + DF+ G LG+
Sbjct: 13 VILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPV 72
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV-QRMDMNV-VKKDLPPKTVF 836
F +F PI G ++N++ VK + + +L + + ++ +RM +V + LP K
Sbjct: 73 FMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQ 132
Query: 837 VITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGI 889
V+ +L+ Q ++Y+ F+D R+ N +++ F+G AL +I NHP +
Sbjct: 133 VLFCRLTDEQHKVYQNFVDSKEVY--RILNGEMQ--IFSGLIALRKICNHPDL 181
Score = 217 (81.4 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
Identities = 55/146 (37%), Positives = 80/146 (54%)
Query: 945 NDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGK 1004
+D L E + SGKM+++ +L + G + L+FSQS LD++E +L R K
Sbjct: 194 DDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFL----RAQK 249
Query: 1005 QGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRV 1064
L ++DG T + RQ L+ R+NE + + L++TR G LG+NL ANRV
Sbjct: 250 YTYL--------KMDGTTTIASRQPLITRYNEDTS--IFVFLLTTRVGGLGVNLTGANRV 299
Query: 1065 IIVDGSWNPTYDLQAIYRAWRCMDKQ 1090
+I D WNP+ D QA RAWR K+
Sbjct: 300 VIYDPDWNPSTDTQARERAWRIGQKK 325
>TAIR|locus:2042619 [details] [associations]
symbol:DRD1 "DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0004386 "helicase activity" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006306 "DNA methylation" evidence=RCA;IMP]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IGI] [GO:0050832 "defense response to fungus"
evidence=IMP] [GO:0006260 "DNA replication" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0007267
"cell-cell signaling" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0009616 "virus induced gene
silencing" evidence=RCA] [GO:0010050 "vegetative phase change"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0016571 "histone methylation"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0050832 GO:GO:0003677
GO:GO:0004386 GO:GO:0030422 GO:GO:0006306 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AC007047
KO:K10875 IPI:IPI00539494 PIR:G84539 RefSeq:NP_179232.1
UniGene:At.40283 ProteinModelPortal:Q9SIW2 SMR:Q9SIW2 STRING:Q9SIW2
PaxDb:Q9SIW2 PRIDE:Q9SIW2 EnsemblPlants:AT2G16390.1 GeneID:816136
KEGG:ath:AT2G16390 TAIR:At2g16390 HOGENOM:HOG000029425
InParanoid:Q9SIW2 OMA:ISKMWFE PhylomeDB:Q9SIW2
ProtClustDB:CLSN2683737 ArrayExpress:Q9SIW2 Genevestigator:Q9SIW2
Uniprot:Q9SIW2
Length = 888
Score = 282 (104.3 bits), Expect = 2.7e-32, Sum P(2) = 2.7e-32
Identities = 73/254 (28%), Positives = 128/254 (50%)
Query: 563 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV 622
+A++K HQ+ G +F+ N++ + D G GCI+AH G GKTF +I+F+ + +
Sbjct: 347 AAEMKPHQIEGFQFLCSNLV-------ADDPG-GCIMAHAPGSGKTFMIISFMQSFLAKY 398
Query: 623 NLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGV 682
L+V P +L WK+EF++W+ ++ L + + +R ++ +L +W K +
Sbjct: 399 PQA--KPLVVLPKGILPTWKKEFVRWQVEDIPLLDFYSAKAENRAQQLSILKQWMEKKSI 456
Query: 683 FLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVK 742
+GY F + D +EI L P IL+ DE H +N + Q+L QV+
Sbjct: 457 LFLGYQQFSTIVCDD-TTDSLSCQEI---LLKVPSILILDEGHTPRNEDTNLLQSLAQVQ 512
Query: 743 CQRRIALTGSPLQNNLMEYYCMVDFVREGFL--GSSHEFRNRF--QNPIE-NGQHTNSTS 797
R++ L+G+ QN++ E + +++ VR FL +S R P + G+ T S S
Sbjct: 513 TPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKLDTSKSAVKRILAYTPCDVRGRLTGSNS 572
Query: 798 EDVKIMNQR-SHIL 810
+ + N+ H L
Sbjct: 573 DMASMFNETVEHTL 586
Score = 162 (62.1 bits), Expect = 2.7e-32, Sum P(2) = 2.7e-32
Identities = 48/143 (33%), Positives = 75/143 (52%)
Query: 945 NDLLHEHTYKELDYS-G-KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRP 1002
+D + ++LD + G K L+++ +C + G+K LVFSQ + L +E R
Sbjct: 677 SDTTMDEMVEKLDLNEGVKAKFFLNLINLCDSAGEKLLVFSQYLIPLKFLE-------RL 729
Query: 1003 GKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSAN 1062
K WK GK+ + L G T S +R+ +E FN + K S +A GI+L A+
Sbjct: 730 AALAKGWKLGKEVFVLTGNTSSEQREWSMETFNS--SPDAKIFFGSIKACGEGISLVGAS 787
Query: 1063 RVIIVDGSWNPTYDLQAIYRAWR 1085
R++I+D NP+ QAI RA+R
Sbjct: 788 RILILDVPLNPSVTRQAIGRAFR 810
Score = 57 (25.1 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 22/85 (25%), Positives = 35/85 (41%)
Query: 768 VREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVK 827
VR GS+ + + F +E HT SED + + L E K + + +
Sbjct: 563 VRGRLTGSNSDMASMFNETVE---HTLQKSEDFTVKIKVIQDLREMTKKVLHYYKGDFLD 619
Query: 828 KDLPPKTVFVITVKLSPLQRRLYKR 852
+LP F + + LSP Q K+
Sbjct: 620 -ELPGLADFTVVLNLSPKQLNEVKK 643
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 197 (74.4 bits), Expect = 2.9e-32, Sum P(4) = 2.9e-32
Identities = 53/173 (30%), Positives = 84/173 (48%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
L+ DEA IKN ++ Q L +RR+ LTG+PLQN+LME + ++ F+ S E
Sbjct: 1039 LILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGTPLQNDLMELWSLMHFLMPYVFSSHRE 1098
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F+ F NP+ N + I L++ ++ F+ R V+K +P K VI
Sbjct: 1099 FKEWFSNPMTGMIEGNMEYNETLITR-----LHKVIRPFLLRRLKKEVEKQMPKKYEHVI 1153
Query: 839 TVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQ 891
T +LS QR LY+ F+ T + + + S L ++ NHP + +
Sbjct: 1154 TCRLSNRQRYLYEDFMS-RAKTRETLQTGNLL-SVINVLMQLRKVCNHPNMFE 1204
Score = 187 (70.9 bits), Expect = 2.9e-32, Sum P(4) = 2.9e-32
Identities = 48/126 (38%), Positives = 68/126 (53%)
Query: 960 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLD 1019
GK+ + +L G + L+F+Q LD++E +L+ G + RLD
Sbjct: 1658 GKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNY------------HGHIYLRLD 1705
Query: 1020 GRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQA 1079
G T +RQ L+ERFN +KR+ C ++STR+G +GINL A+ VI D WNPT D QA
Sbjct: 1706 GSTRVEQRQILMERFNG--DKRIFCFILSTRSGGVGINLTGADTVIFYDSDWNPTMDAQA 1763
Query: 1080 IYRAWR 1085
R R
Sbjct: 1764 QDRCHR 1769
Score = 140 (54.3 bits), Expect = 2.9e-32, Sum P(4) = 2.9e-32
Identities = 56/218 (25%), Positives = 98/218 (44%)
Query: 482 DDAELGE-ETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 540
D+ +L +T + + E+++ LKSL + S S + G ++G ++L DA
Sbjct: 827 DEEDLSTVKTDTDMEEQDEQEDGLKSLMADADATSGAAGSGSTAG--ASGNKDDMLNDAA 884
Query: 541 TGYIVNVVREKGEE------AVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKG 594
+ ++ KG +P + L+ +Q +G+ ++ V ++
Sbjct: 885 A--LAESLQPKGNTLSSTNVVTPVPFLLKHSLREYQHIGLDWL----------VTMNERK 932
Query: 595 LGCILAHTMGLGKTFQVIAFL-YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 653
L ILA MGLGKT Q IA L + A N G LIV P +V+ NW+ EF KW P
Sbjct: 933 LNGILADEMGLGKTIQTIALLAHLACAKGNWGPH--LIVVPSSVMLNWEMEFKKWCPG-- 988
Query: 654 KPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFR 691
++ ++R+ + + W K F + T+++
Sbjct: 989 --FKILTYYGSQKERKLKRVG-W-TKPNAFHVCITSYK 1022
Score = 42 (19.8 bits), Expect = 2.9e-32, Sum P(4) = 2.9e-32
Identities = 23/111 (20%), Positives = 42/111 (37%)
Query: 114 KVSGSVEEIE-DVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDXXXXXX 172
+V+ +E E D D +D + ++ + EEQ K + DD++
Sbjct: 686 EVTALAKESEMDFDDFLND--LPPGYLENRDKLMKEEQSSAI-KTETPDDSDDSEFEAKE 742
Query: 173 XXXXXXXXISKQKEIGS-VDWTIEDSAVETRPLVDASKSLSNKKTDDGDMP 222
ISKQ+E +D E +E + + L+ K++ P
Sbjct: 743 ASDDDENTISKQEEAEQEIDHKKEIDELEADNDLSVEQLLAKYKSEQPPSP 793
Score = 40 (19.1 bits), Expect = 2.8e-17, Sum P(4) = 2.8e-17
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 1000 PRPGKQGKLWKKGKDWYRLDGRTES 1024
P P K K + GK ++ L T S
Sbjct: 1394 PTPAKVAKTMQDGKPFFYLTPATNS 1418
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 198 (74.8 bits), Expect = 3.3e-32, Sum P(3) = 3.3e-32
Identities = 59/191 (30%), Positives = 92/191 (48%)
Query: 719 LVCDEAHMIKNTRADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN ++ + + + + R+ LTG+PLQNNL E + +++FV S+
Sbjct: 594 MIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGTPLQNNLPELWALLNFVLPKIFNSAK 653
Query: 778 EFRNRFQNPIEN-G--QHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT 834
F + F P N G + T E+ ++ +R H + L+ F+ R V+KDLP K
Sbjct: 654 TFEDWFNTPFANTGTQEKLELTEEETLLIIRRLH---KVLRPFLLRRLKKEVEKDLPDKV 710
Query: 835 VFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ----ALAQIWNHPGIL 890
VI KLS LQ++LY++ L H E K G L +I NHP +
Sbjct: 711 EKVIKCKLSGLQQQLYQQMLK-HNALFVGAGTEGATKGGIKGLNNKIMQLRKICNHPFVF 769
Query: 891 QLTKDKGYPSR 901
+ PSR
Sbjct: 770 DEVEGVVNPSR 780
Score = 187 (70.9 bits), Expect = 3.3e-32, Sum P(3) = 3.3e-32
Identities = 51/137 (37%), Positives = 71/137 (51%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
+GK LL +L G + L+F Q +D++E +L K + RL
Sbjct: 790 AGKFELLDRVLPKFKASGHRVLMFFQMTQVMDIMEDFLRM------------KDLKYMRL 837
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T++ ER +++ FN P + C L+STRAG LG+NL +A+ VII D WNP DLQ
Sbjct: 838 DGSTKTEERTEMLNAFNAP-DSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQ 896
Query: 1079 AIYRAWRCMDKQSQFLL 1095
A RA R K +L
Sbjct: 897 AQDRAHRIGQKNEVRIL 913
Score = 117 (46.2 bits), Expect = 3.3e-32, Sum P(3) = 3.3e-32
Identities = 46/173 (26%), Positives = 80/173 (46%)
Query: 488 EETKRKIAIEKERQERLKSLQVQ----FSSKSKLMNSVTLDGDLSAGASIEVLGDAI--- 540
EE K+ +++ + R+ L Q S S+ + + + + G ++ + D
Sbjct: 386 EEAYLKL-LDQTKDTRITQLLRQTNSFLDSLSEAVRAQQNEAKILHGEEVQPITDEEREK 444
Query: 541 TGY--IVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCI 598
T Y + + ++EK ++ I + LK +Q+ G+ +M V + L I
Sbjct: 445 TDYYEVAHRIKEKIDKQPSI--LVGGTLKEYQLRGLEWM----------VSLYNNHLNGI 492
Query: 599 LAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
LA MGLGKT Q I+ L T + V + L++ P++ + NW EF KW PS
Sbjct: 493 LADEMGLGKTIQSIS-LITYLYEVKKDIGPFLVIVPLSTITNWTLEFEKWAPS 544
Score = 44 (20.5 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 486 LGEETKRKIAIEKERQERLKSLQ 508
L EE +R+ +EK ++ER LQ
Sbjct: 303 LAEELERQQLLEKRKKERNLHLQ 325
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 200 (75.5 bits), Expect = 4.0e-32, Sum P(3) = 4.0e-32
Identities = 56/144 (38%), Positives = 77/144 (53%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKMV+L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 488 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC-----------MWR-GYEYCRL 535
Query: 1019 DGRTESSERQ------------KLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVII 1066
DG+T ER+ + +E FN P + R ++STRAG LGINL SA+ VI+
Sbjct: 536 DGQTPHEEREDKFLEVELLGQREAIEAFNVPNSSRF-IFMLSTRAGGLGINLASADVVIL 594
Query: 1067 VDGSWNPTYDLQAIYRAWRCMDKQ 1090
D WNP DLQA+ RA R K+
Sbjct: 595 YDSDWNPQVDLQAMDRAHRIGQKK 618
Score = 180 (68.4 bits), Expect = 4.0e-32, Sum P(3) = 4.0e-32
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 311 LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 370
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F + F T + D K++ +R H + LK F+ R V+K LPPK I
Sbjct: 371 FDSWFD--------TKNCLGDQKLV-ERLHAV---LKPFLLRRIKTDVEKSLPPKKEIKI 418
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
+ LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 419 YLGLSKMQREWYTKILMKDID-VLNSAGKMDKMR--LLNILMQLRKCCNHP 466
Score = 117 (46.2 bits), Expect = 4.0e-32, Sum P(3) = 4.0e-32
Identities = 31/82 (37%), Positives = 41/82 (50%)
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
+ G+ ILA MGLGKT Q IA L N+ +++ P + LHNW EF +W PS
Sbjct: 202 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPS 260
Query: 652 ELKPLRVFMLEDVSRDRRAELL 673
LRV +D RA +
Sbjct: 261 ----LRVICFVG-DKDARAAFI 277
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 199 (75.1 bits), Expect = 4.3e-32, Sum P(3) = 4.3e-32
Identities = 56/144 (38%), Positives = 76/144 (52%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKMV+L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 464 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC-----------MWR-GYEYCRL 511
Query: 1019 DGRTESSERQ------------KLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVII 1066
DG+T ER+ + +E FN P N ++STRAG LGINL SA+ VI+
Sbjct: 512 DGQTPHEEREDKFLEVEFLGQREAIEAFNAP-NSSKFIFMLSTRAGGLGINLASADVVIL 570
Query: 1067 VDGSWNPTYDLQAIYRAWRCMDKQ 1090
D WNP DLQA+ RA R K+
Sbjct: 571 YDSDWNPQVDLQAMDRAHRIGQKK 594
Score = 180 (68.4 bits), Expect = 4.3e-32, Sum P(3) = 4.3e-32
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 287 LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 346
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F + F T + D K++ +R H + LK F+ R V+K LPPK I
Sbjct: 347 FDSWFD--------TKNCLGDQKLV-ERLHAV---LKPFLLRRIKTDVEKSLPPKKEIKI 394
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
+ LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 395 YLGLSKMQREWYTKILMKDID-VLNSSGKMDKMR--LLNILMQLRKCCNHP 442
Score = 117 (46.2 bits), Expect = 4.3e-32, Sum P(3) = 4.3e-32
Identities = 31/82 (37%), Positives = 41/82 (50%)
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
+ G+ ILA MGLGKT Q IA L N+ +++ P + LHNW EF +W PS
Sbjct: 178 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPS 236
Query: 652 ELKPLRVFMLEDVSRDRRAELL 673
LRV +D RA +
Sbjct: 237 ----LRVICFVG-DKDARAAFI 253
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 200 (75.5 bits), Expect = 4.3e-32, Sum P(3) = 4.3e-32
Identities = 56/144 (38%), Positives = 77/144 (53%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKMV+L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 488 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC-----------MWR-GYEYCRL 535
Query: 1019 DGRTESSERQ------------KLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVII 1066
DG+T ER+ + +E FN P + R ++STRAG LGINL SA+ VI+
Sbjct: 536 DGQTPHEERENGFLQIYFRRRREAIEAFNVPNSSRF-IFMLSTRAGGLGINLASADVVIL 594
Query: 1067 VDGSWNPTYDLQAIYRAWRCMDKQ 1090
D WNP DLQA+ RA R K+
Sbjct: 595 YDSDWNPQVDLQAMDRAHRIGQKK 618
Score = 180 (68.4 bits), Expect = 4.3e-32, Sum P(3) = 4.3e-32
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 311 LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 370
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F + F T + D K++ +R H + LK F+ R V+K LPPK I
Sbjct: 371 FDSWFD--------TKNCLGDQKLV-ERLHAV---LKPFLLRRIKTDVEKSLPPKKEIKI 418
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
+ LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 419 YLGLSKMQREWYTKILMKDID-VLNSAGKMDKMR--LLNILMQLRKCCNHP 466
Score = 117 (46.2 bits), Expect = 4.3e-32, Sum P(3) = 4.3e-32
Identities = 31/82 (37%), Positives = 41/82 (50%)
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
+ G+ ILA MGLGKT Q IA L N+ +++ P + LHNW EF +W PS
Sbjct: 202 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPS 260
Query: 652 ELKPLRVFMLEDVSRDRRAELL 673
LRV +D RA +
Sbjct: 261 ----LRVICFVG-DKDARAAFI 277
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 200 (75.5 bits), Expect = 4.3e-32, Sum P(3) = 4.3e-32
Identities = 56/144 (38%), Positives = 77/144 (53%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKMV+L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 488 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC-----------MWR-GYEYCRL 535
Query: 1019 DGRTESSERQ------------KLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVII 1066
DG+T ER+ + +E FN P + R ++STRAG LGINL SA+ VI+
Sbjct: 536 DGQTPHEEREDKFLEVELLGQREAIEAFNVPNSSRF-IFMLSTRAGGLGINLASADVVIL 594
Query: 1067 VDGSWNPTYDLQAIYRAWRCMDKQ 1090
D WNP DLQA+ RA R K+
Sbjct: 595 YDSDWNPQVDLQAMDRAHRIGQKK 618
Score = 180 (68.4 bits), Expect = 4.3e-32, Sum P(3) = 4.3e-32
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 311 LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 370
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F + F T + D K++ +R H + LK F+ R V+K LPPK I
Sbjct: 371 FDSWFD--------TKNCLGDQKLV-ERLHAV---LKPFLLRRIKTDVEKSLPPKKEIKI 418
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
+ LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 419 YLGLSKMQREWYTKILMKDID-VLNSAGKMDKMR--LLNILMQLRKCCNHP 466
Score = 117 (46.2 bits), Expect = 4.3e-32, Sum P(3) = 4.3e-32
Identities = 31/82 (37%), Positives = 41/82 (50%)
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
+ G+ ILA MGLGKT Q IA L N+ +++ P + LHNW EF +W PS
Sbjct: 202 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPS 260
Query: 652 ELKPLRVFMLEDVSRDRRAELL 673
LRV +D RA +
Sbjct: 261 ----LRVICFVG-DKDARAAFI 277
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 197 (74.4 bits), Expect = 4.3e-32, Sum P(4) = 4.3e-32
Identities = 51/132 (38%), Positives = 75/132 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK+ LL +L + L+FSQ L+++E +L +G+ G + R+
Sbjct: 585 SGKLDLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFL--------EGE----GYQYDRI 632
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG + RQK ++RFN+P+++ L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 633 DGSIKGDLRQKAIDRFNDPVSEHF-VFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQ 691
Query: 1079 AIYRAWRCMDKQ 1090
A RA R K+
Sbjct: 692 AFSRAHRMGQKK 703
Score = 162 (62.1 bits), Expect = 4.3e-32, Sum P(4) = 4.3e-32
Identities = 42/136 (30%), Positives = 74/136 (54%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH +++ ++ + L + + ++ LTG+PLQNNL E + +++F+ G
Sbjct: 406 LVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFHLLNFLSSGKFNDLQT 465
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F+ F + S E VK R H + E ++R+ +V+K +PPK+ F++
Sbjct: 466 FQAEFTDV--------SKEEQVK----RLHEILEP--HMLRRLKADVLKS-MPPKSEFIV 510
Query: 839 TVKLSPLQRRLYKRFL 854
V+LS +Q++ YK L
Sbjct: 511 RVELSSMQKKFYKHIL 526
Score = 110 (43.8 bits), Expect = 4.3e-32, Sum P(4) = 4.3e-32
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 590 SGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWR 649
S +G+ ILA MGLGKT Q + FLY+ + + LI P++ L NW++E W
Sbjct: 281 SWGQGIPTILADEMGLGKTIQTVVFLYSLFKEGHCR-GPFLISVPLSTLTNWERELELWA 339
Query: 650 P 650
P
Sbjct: 340 P 340
Score = 70 (29.7 bits), Expect = 4.3e-32, Sum P(4) = 4.3e-32
Identities = 18/64 (28%), Positives = 26/64 (40%)
Query: 365 KKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCC 424
KK +D + YC C DL+ C SC +++ TC+ + D W C
Sbjct: 28 KKQKFRDEE----YCKVCSDGGDLLCCDSCPSVYHRTCLSPPLKSIPKGD------WICP 77
Query: 425 CCSP 428
C P
Sbjct: 78 RCIP 81
Score = 54 (24.1 bits), Expect = 7.7e-12, Sum P(2) = 7.7e-12
Identities = 17/57 (29%), Positives = 23/57 (40%)
Query: 700 KDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVK-----CQRRIALTG 751
K + E C DG D+L CD + + R + LK + C R I L G
Sbjct: 29 KQKFRDEEYCKVCSDGGDLLCCDSCPSVYH-RTCLSPPLKSIPKGDWICPRCIPLPG 84
Score = 45 (20.9 bits), Expect = 1.6e-29, Sum P(4) = 1.6e-29
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 118 SVEEIEDVDGNSDDPFVADAIANE 141
S+EE++D DGN + F I E
Sbjct: 154 SLEELDDQDGNLHERFYRYGIKPE 177
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 199 (75.1 bits), Expect = 5.2e-32, Sum P(3) = 5.2e-32
Identities = 56/144 (38%), Positives = 76/144 (52%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKMV+L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 485 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC-----------MWR-GYEYCRL 532
Query: 1019 DGRTESSERQ------------KLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVII 1066
DG+T ER+ + +E FN P N ++STRAG LGINL SA+ VI+
Sbjct: 533 DGQTPHEEREDKFLEVEFLGQREAIEAFNAP-NSSKFIFMLSTRAGGLGINLASADVVIL 591
Query: 1067 VDGSWNPTYDLQAIYRAWRCMDKQ 1090
D WNP DLQA+ RA R K+
Sbjct: 592 YDSDWNPQVDLQAMDRAHRIGQKK 615
Score = 180 (68.4 bits), Expect = 5.2e-32, Sum P(3) = 5.2e-32
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 308 LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 367
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F + F T + D K++ +R H + LK F+ R V+K LPPK I
Sbjct: 368 FDSWFD--------TKNCLGDQKLV-ERLHAV---LKPFLLRRIKTDVEKSLPPKKEIKI 415
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
+ LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 416 YLGLSKMQREWYTKILMKDID-VLNSSGKMDKMR--LLNILMQLRKCCNHP 463
Score = 117 (46.2 bits), Expect = 5.2e-32, Sum P(3) = 5.2e-32
Identities = 31/82 (37%), Positives = 41/82 (50%)
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
+ G+ ILA MGLGKT Q IA L N+ +++ P + LHNW EF +W PS
Sbjct: 199 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPS 257
Query: 652 ELKPLRVFMLEDVSRDRRAELL 673
LRV +D RA +
Sbjct: 258 ----LRVICFVG-DKDARAAFI 274
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 201 (75.8 bits), Expect = 7.5e-32, Sum P(3) = 7.5e-32
Identities = 57/144 (39%), Positives = 75/144 (52%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKMV L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 465 SGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYC-----------MWR-GYEYCRL 512
Query: 1019 DGRTESSERQKL------------VERFNEPLNKRVKCTLISTRAGSLGINLHSANRVII 1066
DG+T ER+ L +E FN P N ++STRAG LGINL SA+ VI+
Sbjct: 513 DGQTPHEERENLFLHKHNLFSTEAIEAFNAP-NSSKFIFMLSTRAGGLGINLASADVVIL 571
Query: 1067 VDGSWNPTYDLQAIYRAWRCMDKQ 1090
D WNP DLQA+ RA R K+
Sbjct: 572 YDSDWNPQVDLQAMDRAHRIGQKK 595
Score = 180 (68.4 bits), Expect = 7.5e-32, Sum P(3) = 7.5e-32
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 288 LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 347
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F + F T + D K++ +R H + LK F+ R V+K LPPK I
Sbjct: 348 FDSWFD--------TKNCLGDQKLV-ERLHAV---LKPFLLRRIKTDVEKSLPPKKEIKI 395
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
+ LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 396 YLGLSKMQREWYTKILMKDID-VLNSSGKMDKMR--LLNILMQLRKCCNHP 443
Score = 113 (44.8 bits), Expect = 7.5e-32, Sum P(3) = 7.5e-32
Identities = 25/60 (41%), Positives = 32/60 (53%)
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
+ G+ ILA MGLGKT Q IA L N +++ P + LHNW EF +W PS
Sbjct: 179 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNFP-GPHMVLVPKSTLHNWMNEFKRWVPS 237
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 197 (74.4 bits), Expect = 7.6e-32, Sum P(4) = 7.6e-32
Identities = 62/180 (34%), Positives = 90/180 (50%)
Query: 719 LVCDEAHMIKNTRADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H IKNT++ T L Q R+ LTG+PLQNNL E + +++FV S
Sbjct: 993 MIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTGTPLQNNLPELWALLNFVLPKIFNSIK 1052
Query: 778 EFRNRFQNPIEN--GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV 835
F F P N GQ +E+ ++ + L++ L+ F+ R V+K+LP K
Sbjct: 1053 SFDEWFNTPFANTGGQDKIGLNEEEALLIIKR--LHKVLRPFLFRRLKKDVEKELPDKVE 1110
Query: 836 FVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ----ALAQIWNHPGILQ 891
VI LS LQ +LY++ + HG V EK K+ G Q L +I NHP I +
Sbjct: 1111 KVIKCPLSGLQLKLYQQ-MKKHGMLF--VDGEK-GKTGIKGLQNTVMQLKKICNHPFIFE 1166
Score = 195 (73.7 bits), Expect = 7.6e-32, Sum P(4) = 7.6e-32
Identities = 53/127 (41%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
+GK LL IL G K+L+F Q + ++E YL + K WK + RL
Sbjct: 1186 AGKFELLDRILPKLFLTGHKTLMFFQMTQIMTIMEDYL--------RSKNWK----YLRL 1233
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T+S +R L+ +FN+P + V ++STRAG LG+NL +A+ VII D WNP DLQ
Sbjct: 1234 DGSTKSDDRCSLLAQFNDPKSD-VYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQ 1292
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1293 AQDRAHR 1299
Score = 120 (47.3 bits), Expect = 7.6e-32, Sum P(4) = 7.6e-32
Identities = 46/160 (28%), Positives = 69/160 (43%)
Query: 498 KERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEV-LGDAITGYIVNVVREKGEEAV 556
K+ + L++L + ++S G S A +E + + V + E V
Sbjct: 799 KQTDQYLENLTRAVRIQQSNIHSGNTSGKGSNSAELEAPISEEDKNLDYFKVAHRIHEEV 858
Query: 557 RIPSS-ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL 615
P + LK +Q+ G+ +M + + L ILA MGLGKT Q IAF+
Sbjct: 859 EQPKIFVGGTLKDYQLKGLEWM----------LSLYNNNLNGILADEMGLGKTIQTIAFI 908
Query: 616 -YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELK 654
Y + G LI+ P++ L NW EF KW PS K
Sbjct: 909 TYLIEKKNQQG--PFLIIVPLSTLTNWIMEFEKWAPSVKK 946
Score = 39 (18.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 817 FVQRM-DMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRK 871
F Q + M+ VKKD P + + T K +P + + +F V NE + K
Sbjct: 480 FQQNVPQMSSVKKDTPTRDANMRTSK-APYIQNIPNQFQRRAYSATIPVKNESLAK 534
Score = 38 (18.4 bits), Expect = 7.6e-32, Sum P(4) = 7.6e-32
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 484 AELGEETKRKIAIEKERQERLKSLQ 508
A L +E K++I E+ ++RL++L+
Sbjct: 753 AHLEKEEKKRI--ERSARQRLQALR 775
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 205 (77.2 bits), Expect = 7.9e-32, Sum P(4) = 7.9e-32
Identities = 52/130 (40%), Positives = 74/130 (56%)
Query: 956 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
+D SGKM LL +L G + L+FSQ LD++E Y+ L++ G +
Sbjct: 577 IDNSGKMALLDKLLKKLKERGSRVLIFSQMSRMLDILEDYM-----------LYR-GYKY 624
Query: 1016 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1075
R+DG TES R+ +E +N+P + L++TRAG LGI L++A+ VI+ D WNP
Sbjct: 625 ARIDGSTESIVRENSIENYNKP-GSDLFAFLLTTRAGGLGITLNTADIVILFDSDWNPQM 683
Query: 1076 DLQAIYRAWR 1085
DLQA RA R
Sbjct: 684 DLQAQDRAHR 693
Score = 177 (67.4 bits), Expect = 7.9e-32, Sum P(4) = 7.9e-32
Identities = 52/182 (28%), Positives = 87/182 (47%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
++ DEAH IKN + ++ ++ Q R+ +TG+PLQNNL E + +++F+ SS +
Sbjct: 401 IIIDEAHRIKNENSVLSKGVRMFNSQFRLLITGTPLQNNLHELWSLLNFLLPDVFSSSDD 460
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F F N+T +++++ L++ L+ F+ R V+K LPPK +
Sbjct: 461 FDKWFDL-------ANNTENQQEVIDK----LHKVLRPFLLRRIKTEVEKSLPPKKEIKL 509
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDK 896
V LS +Q+ YKR L DL N R L + NHP + +++
Sbjct: 510 FVGLSTMQKEWYKRLLSKDLDAVVVGAKGNTG-RVRLLNICMQLRKACNHPYLFDGAEEE 568
Query: 897 GY 898
Y
Sbjct: 569 PY 570
Score = 115 (45.5 bits), Expect = 7.9e-32, Sum P(4) = 7.9e-32
Identities = 47/160 (29%), Positives = 76/160 (47%)
Query: 563 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV 622
S ++ +QV G+ W +IQ ++G+ ILA MGLGKT Q I+ L S
Sbjct: 273 SGTMRDYQVYGLN--W--LIQLY------ERGINGILADEMGLGKTLQTISLL--GYLSE 320
Query: 623 NLGLRTA-LIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRD-RRAELLAKWRAKG 680
G+R LI+ P + L W +EF +W P L+ +R ++ D ++ +L+ K K
Sbjct: 321 YKGIRGPHLIIAPKSTLSGWAKEFTRWCPF-LRVVRFHGSKEEREDIKKNQLIFK---KF 376
Query: 681 GVFLIGY-TAFRNLSFGKHVKDRNMAREICHALQDGPDIL 719
V + Y A R S K R + + H +++ +L
Sbjct: 377 DVCITTYEVAIREKSTFKKFSWRYIIIDEAHRIKNENSVL 416
Score = 46 (21.3 bits), Expect = 7.9e-32, Sum P(4) = 7.9e-32
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 482 DDAELGEET-----KRKIAIEKERQERLKSLQVQ 510
DD +L + T RK E+ R ERL+S++++
Sbjct: 104 DDEDLNDPTIQNGINRKDETEEARNERLESIRLE 137
Score = 43 (20.2 bits), Expect = 1.9e-24, Sum P(3) = 1.9e-24
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 111 RLCKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQR-KKF 154
R+ + GS EE ED+ N D E+A+ E+ KKF
Sbjct: 352 RVVRFHGSKEEREDIKKNQLIFKKFDVCITTYEVAIREKSTFKKF 396
Score = 39 (18.8 bits), Expect = 4.1e-31, Sum P(4) = 4.1e-31
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 485 ELGEETKRKIAIEKERQERLKSLQ-VQFSSKSKLMNS-VTLDGDLSAGASIEVL 536
E E I +EKER ++++ Q Q K + D + SA A ++ L
Sbjct: 125 EARNERLESIRLEKERLKQIREQQRKQLQELEKNQRQQLQEDKEKSANARLKYL 178
Score = 39 (18.8 bits), Expect = 8.3e-15, Sum P(4) = 8.3e-15
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 987 PTLDLIEFYLSKLPRP-GKQGKLWKKGKDWYRLDGRTESSERQK 1029
P D +FY +L + K+ + + K +WY + E E ++
Sbjct: 864 PIYDF-QFYPPRLTQLYEKENEAYNKKVEWYDQKDKGELPEEEE 906
Score = 38 (18.4 bits), Expect = 5.2e-31, Sum P(4) = 5.2e-31
Identities = 8/41 (19%), Positives = 24/41 (58%)
Query: 120 EEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEE 160
++++D D + +DP + + I + E + +R + ++++E
Sbjct: 100 DQVDD-DEDLNDPTIQNGINRKDETEEARNERLESIRLEKE 139
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 198 (74.8 bits), Expect = 8.9e-32, Sum P(4) = 8.9e-32
Identities = 49/132 (37%), Positives = 73/132 (55%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKM++L +L G + L+FSQ LD++E Y + + ++ R+
Sbjct: 489 SGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYC------------YFRDFEYCRI 536
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T ER + ++ +N+P N L++TRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 537 DGSTSHEERIEAIDEYNKP-NSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQ 595
Query: 1079 AIYRAWRCMDKQ 1090
A+ RA R K+
Sbjct: 596 AMDRAHRIGQKK 607
Score = 162 (62.1 bits), Expect = 8.9e-32, Sum P(4) = 8.9e-32
Identities = 48/174 (27%), Positives = 84/174 (48%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
+V DEAH IKN ++ +Q ++ + R+ +TG+PLQNNL E + +++F+ G S
Sbjct: 309 IVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELWALLNFLLPDIFGDSEL 368
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F F+ N++ +D +I+ Q+ H + L F+ R V+K L PK +
Sbjct: 369 FDEWFEQ--------NNSEQDQEIVIQQLHSV---LNPFLLRRVKADVEKSLLPKIETNV 417
Query: 839 TVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQ 891
V ++ +Q + YK L+ N V + + L + NHP + +
Sbjct: 418 YVGMTDMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFE 471
Score = 137 (53.3 bits), Expect = 8.9e-32, Sum P(4) = 8.9e-32
Identities = 44/116 (37%), Positives = 65/116 (56%)
Query: 559 PSSI-SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 617
PS + S KL+ +QV G+ W +I S+ + K L ILA MGLGKT Q I+FL
Sbjct: 176 PSFVKSGKLRDYQVQGLN--W--LI-SLHENK-----LSGILADEMGLGKTLQTISFL-G 224
Query: 618 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELL 673
+R V LI+ P + L NW++EF+KW P+ + V +L +D RA+++
Sbjct: 225 YLRYVKQIEGPFLIIVPKSTLDNWRREFLKWTPN----VNVLVLHG-DKDTRADIV 275
Score = 48 (22.0 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 18/76 (23%), Positives = 36/76 (47%)
Query: 784 QNPIENGQHTNSTSEDVKIM---NQ---RSHILYEQLKGFVQRMDMNVVKKDLPPKTVFV 837
Q P N + T +T ED ++ N+ R+ LYE+LK + D+ + +TV
Sbjct: 984 QYPPNNARRTYNTLEDKFLLLAVNKYGLRADKLYEKLKQEIMMSDLFTFDWFIKTRTVHE 1043
Query: 838 ITVKLSPLQRRLYKRF 853
++ ++ L + + +
Sbjct: 1044 LSKRVHTLLTLIVREY 1059
Score = 44 (20.5 bits), Expect = 8.9e-32, Sum P(4) = 8.9e-32
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 181 ISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLET 235
++ Q+E D S + LVD S SN +DD ++ G + E++ + + T
Sbjct: 1 MTTQQEEQRSDTKNSKSESPSEVLVDTLDSKSNGSSDDDNI-GQSEELSDKEIYT 54
>SGD|S000001934 [details] [associations]
symbol:IRC5 "Putative ATPase containing the DEAD/H
helicase-related sequence motif" species:4932 "Saccharomyces
cerevisiae" [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000001934 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:D50617 EMBL:BK006940 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006312 GeneTree:ENSGT00550000075106 PIR:S56293
RefSeq:NP_116696.2 ProteinModelPortal:P43610 SMR:P43610
DIP:DIP-5300N MINT:MINT-543614 STRING:P43610 PaxDb:P43610
PRIDE:P43610 EnsemblFungi:YFR038W GeneID:850599 KEGG:sce:YFR038W
CYGD:YFR038w OMA:FEIFNKW OrthoDB:EOG40S3Q6 NextBio:966463
Genevestigator:P43610 GermOnline:YFR038W Uniprot:P43610
Length = 853
Score = 383 (139.9 bits), Expect = 9.3e-32, P = 9.3e-32
Identities = 143/513 (27%), Positives = 232/513 (45%)
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
+ GL ILA MGLGKT Q IA L G L+ P++ L NW EF K+ P
Sbjct: 238 ENGLNGILADEMGLGKTVQSIALLAFIYEMDTKG--PFLVTAPLSTLDNWMNEFAKFAP- 294
Query: 652 ELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 711
+L L+ + ++R A+L ++ GG ++ T++ + ++D ++
Sbjct: 295 DLPVLKYYGTNGY-KERSAKLKNFFKQHGGTGIV-ITSYEII-----LRDTDLI------ 341
Query: 712 LQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 771
+ L+ DE H +KN + LK++ R+ LTG+PLQNNL E + +++F+
Sbjct: 342 MSQNWKFLIVDEGHRLKNINCRLIKELKKINTSNRLLLTGTPLQNNLAELWSLLNFIMPD 401
Query: 772 FLGSSHEFRNRFQ-NPIENGQHTNSTSEDVKIMN---QRSHI--LYEQLKGFV-QRMDMN 824
F F + + G +NS + + K++N Q++ I L+ LK F+ +R+
Sbjct: 402 IFADFEIFNKWFDFDSLNLGSGSNSEALN-KLINDELQKNLISNLHTILKPFLLRRLKKV 460
Query: 825 VVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIW 884
V+ LPPK ++I ++ Q + YK L+G + E I+ F + + +
Sbjct: 461 VLANILPPKREYIINCPMTSAQEKFYKA--GLNGKLKKTMFKELIKDFFTLNDEYIGHVS 518
Query: 885 NHP--GILQLTKDKGYPSRXXXXXXXXXXNMD--Y--NV---VIGEKPRNMNDFLQGKND 935
N + S MD Y N+ + +K +NM L+ D
Sbjct: 519 NRSIRDFINYKLSGNETSNTDNKINPTLLQMDKLYKKNLQMEISNKKLQNMMMQLRQIID 578
Query: 936 DGFFQKDWWNDLLH-EHTYKE--LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLI 992
F ++ LH E E L SGK+ +L ++ + G K L++SQ + LDLI
Sbjct: 579 STFL---FYFPYLHPEDLTLETLLKTSGKLQILQKLIPPLISEGHKVLIYSQFVNMLDLI 635
Query: 993 EFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAG 1052
E + +R+DG + R+ +E+FN +K L+STRA
Sbjct: 636 EDWCDL------------NSFATFRIDGSVNNETRKDQLEKFNSSKDKH-NIFLLSTRAA 682
Query: 1053 SLGINLHSANRVIIVDGSWNPTYDLQAIYRAWR 1085
LGINL A+ V++ D WNP DLQA+ R R
Sbjct: 683 GLGINLVGADTVVLFDSDWNPQVDLQAMDRCHR 715
>SGD|S000006003 [details] [associations]
symbol:MOT1 "Essential protein involved in regulation of
transcription" species:4932 "Saccharomyces cerevisiae" [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045898 "regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000006003 GO:GO:0005739 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0016887 EMBL:BK006949
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:U41849 GO:GO:0000228 GO:GO:0006364
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0042790 GO:GO:0045898 OrthoDB:EOG44XNQZ
EMBL:M83224 PIR:S22775 RefSeq:NP_015243.1 ProteinModelPortal:P32333
SMR:P32333 DIP:DIP-2418N IntAct:P32333 MINT:MINT-623118
STRING:P32333 PaxDb:P32333 PeptideAtlas:P32333 PRIDE:P32333
EnsemblFungi:YPL082C GeneID:856023 KEGG:sce:YPL082C CYGD:YPL082c
GeneTree:ENSGT00630000089754 NextBio:980935 Genevestigator:P32333
GermOnline:YPL082C Uniprot:P32333
Length = 1867
Score = 247 (92.0 bits), Expect = 1.5e-31, Sum P(4) = 1.5e-31
Identities = 53/175 (30%), Positives = 98/175 (56%)
Query: 720 VCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 779
V DE H+IKN+++ +A+K++ R+ LTG+P+QNN++E + + DF+ GFLG+ F
Sbjct: 1406 VLDEGHIIKNSQSKLAKAVKEITANHRLILTGTPIQNNVLELWSLFDFLMPGFLGTEKMF 1465
Query: 780 RNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVIT 839
+ RF PI +++ ++S++ + L++Q+ F+ R V DLPPK +
Sbjct: 1466 QERFAKPIAASRNSKTSSKEQEAGVLALEALHKQVLPFMLRRLKEDVLSDLPPKIIQDYY 1525
Query: 840 VKLSPLQRRLYKRFLDLHGFTNDR-VSNEKI---RKSFFAGYQALAQIWNHPGIL 890
+L LQ++LY F ++ + N +I ++ F Q + ++ NHP ++
Sbjct: 1526 CELGDLQKQLYMDFTKKQKNVVEKDIENSEIADGKQHIFQALQYMRKLCNHPALV 1580
Score = 174 (66.3 bits), Expect = 1.5e-31, Sum P(4) = 1.5e-31
Identities = 43/113 (38%), Positives = 63/113 (55%)
Query: 978 KSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 1037
++L+F Q LD++E L K P + RLDG + +RQK+V +FNE
Sbjct: 1648 RALIFCQLKDMLDMVENDLFKKYMPSVT---------YMRLDGSIDPRDRQKVVRKFNE- 1697
Query: 1038 LNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQ 1090
+ + C L++T+ G LG+NL A+ VI V+ WNP DLQA+ RA R K+
Sbjct: 1698 -DPSIDCLLLTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKK 1749
Score = 81 (33.6 bits), Expect = 1.5e-31, Sum P(4) = 1.5e-31
Identities = 30/104 (28%), Positives = 47/104 (45%)
Query: 557 RIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL- 615
++P +I A L+ +Q G+ W + + K L IL MGLGKT Q I +
Sbjct: 1263 KLPIAIKATLRKYQQDGVN--W---LAFLNKYH-----LHGILCDDMGLGKTLQTICIIA 1312
Query: 616 ---------YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP 650
Y RSV +LI+ P ++ +W+ EF ++ P
Sbjct: 1313 SDQYLRKEDYEKTRSVESRALPSLIICPPSLTGHWENEFDQYAP 1356
Score = 45 (20.9 bits), Expect = 1.5e-31, Sum P(4) = 1.5e-31
Identities = 27/98 (27%), Positives = 49/98 (50%)
Query: 481 LDDAELGEETKRKIAIEKERQE-RLKSLQVQ--FSSKSKL-MNSVTLDGDLSAGASIE-- 534
LD+A++ E + KI +E+ Q +L LQ SS S +N + G + +S+
Sbjct: 95 LDNAQVKLEHEMKIKLEEATQNNQLNLLQEDHHLSSLSDWKLNEILKSGKVLLASSMNDY 154
Query: 535 -VLGDAITGYIVNVVRE-KGEEAVRIPSSISAKLKAHQ 570
VLG A N+ ++ K ++ + S ++A KA++
Sbjct: 155 NVLGKADD----NIRKQAKTDDIKQETSMLNASDKANE 188
Score = 42 (19.8 bits), Expect = 5.6e-07, Sum P(3) = 5.6e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 793 TNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 825
T TSE VK+ N IL + + R+D ++
Sbjct: 474 TPITSEFVKLNNSTIEILVTTIWSLLARLDDDI 506
Score = 41 (19.5 bits), Expect = 9.3e-28, Sum P(3) = 9.3e-28
Identities = 8/40 (20%), Positives = 22/40 (55%)
Query: 545 VNVVREKGEEAVRIPSSISAKLKAHQVV-GIRFMWENIIQ 583
+ + + E + I S++ L+ H++V G+ + ++ I +
Sbjct: 257 LEITEQADESKLMIESTVRPLLEQHEIVAGLVWQFQGIYE 296
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 187 (70.9 bits), Expect = 1.8e-31, Sum P(4) = 1.8e-31
Identities = 51/137 (37%), Positives = 72/137 (52%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
+GK LL +L G K L+F Q ++++E +L +G + RL
Sbjct: 1101 AGKFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRF------------RGMKYMRL 1148
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T++ +R L++ FN P + C L+STRAG LG+NL +A+ VII D WNP DLQ
Sbjct: 1149 DGGTKADDRTDLLKSFNAP-DSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQ 1207
Query: 1079 AIYRAWRCMDKQSQFLL 1095
A RA R K +L
Sbjct: 1208 AQDRAHRIGQKNEVRIL 1224
Score = 182 (69.1 bits), Expect = 1.8e-31, Sum P(4) = 1.8e-31
Identities = 55/179 (30%), Positives = 87/179 (48%)
Query: 719 LVCDEAHMIKNTRADTTQALKQ-VKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN + ++ L Q R+ LTG+PLQNNL E + +++FV S
Sbjct: 905 MIIDEGHRMKNANSKLSETLTQNYHSDYRLILTGTPLQNNLPELWALLNFVLPKIFNSVK 964
Query: 778 EFRNRFQNPIEN--GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV 835
F F P N GQ +E+ ++ R L++ L+ F+ R V+KDLP K
Sbjct: 965 SFDEWFNTPFANTGGQDKIELTEEETLLVIRR--LHKVLRPFLLRRLKKDVEKDLPNKVE 1022
Query: 836 FVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFF-AGYQA--LAQIWNHPGILQ 891
V+ K S LQ +LY++ L + +N + + A Q L +I NHP + +
Sbjct: 1023 KVVKCKSSALQSKLYQQMLRYNMLYAGDPANGSVPVTIKNANNQIMQLKKICNHPFVYE 1081
Score = 140 (54.3 bits), Expect = 1.8e-31, Sum P(4) = 1.8e-31
Identities = 52/168 (30%), Positives = 78/168 (46%)
Query: 488 EETKRKIAIEKERQERLKSLQVQFSSKSK-LMNSVTLDGDLSAGASIEVLGDAITGYI-- 544
++T+ +E+ Q L SL + S+ K +++ G AS+E L D I
Sbjct: 700 KDTRITHLLEQTNQF-LDSLALAVQSQQKEAQDNLAYSGRAIEPASVEPLDDEKREKIDY 758
Query: 545 VNVVREKGEEAVRIPSS-ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTM 603
NV EE + PS + LK +Q+ G+++M V + L ILA M
Sbjct: 759 YNVAHRIKEEVTKQPSILVGGTLKEYQLKGLQWM----------VSLFNNHLNGILADEM 808
Query: 604 GLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
GLGKT Q I+ L T + V L++ P++ + NW EF KW PS
Sbjct: 809 GLGKTIQTISLL-TYLVEVKKIPGPFLVIVPLSTVTNWNLEFEKWAPS 855
Score = 48 (22.0 bits), Expect = 4.8e-23, Sum P(3) = 4.8e-23
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 485 ELGEETKRKIAIEKERQE----RLKS 506
+L EE +R +A+EK+RQE RLKS
Sbjct: 343 QLREEEQR-LALEKQRQELEQNRLKS 367
Score = 42 (19.8 bits), Expect = 1.8e-21, Sum P(4) = 1.8e-21
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLS 528
++D + E +I IE+E+ ERL+ Q+ ++ + L+ LS
Sbjct: 514 MEDIYVNREGYMQITIEQEK-ERLRK-QIDSLNEKDTEKKLELETQLS 559
Score = 38 (18.4 bits), Expect = 1.8e-31, Sum P(4) = 1.8e-31
Identities = 13/51 (25%), Positives = 20/51 (39%)
Query: 114 KVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDAN 164
K +G EI + P + K+ EEQR K ++E + N
Sbjct: 313 KSTGGTPEIPEKKKGKRGPKPKNPKKPTKKQLREEEQRLALEKQRQELEQN 363
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 187 (70.9 bits), Expect = 1.8e-31, Sum P(4) = 1.8e-31
Identities = 51/137 (37%), Positives = 72/137 (52%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
+GK LL +L G K L+F Q ++++E +L +G + RL
Sbjct: 1101 AGKFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRF------------RGMKYMRL 1148
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T++ +R L++ FN P + C L+STRAG LG+NL +A+ VII D WNP DLQ
Sbjct: 1149 DGGTKADDRTDLLKSFNAP-DSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQ 1207
Query: 1079 AIYRAWRCMDKQSQFLL 1095
A RA R K +L
Sbjct: 1208 AQDRAHRIGQKNEVRIL 1224
Score = 182 (69.1 bits), Expect = 1.8e-31, Sum P(4) = 1.8e-31
Identities = 55/179 (30%), Positives = 87/179 (48%)
Query: 719 LVCDEAHMIKNTRADTTQALKQ-VKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN + ++ L Q R+ LTG+PLQNNL E + +++FV S
Sbjct: 905 MIIDEGHRMKNANSKLSETLTQNYHSDYRLILTGTPLQNNLPELWALLNFVLPKIFNSVK 964
Query: 778 EFRNRFQNPIEN--GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV 835
F F P N GQ +E+ ++ R L++ L+ F+ R V+KDLP K
Sbjct: 965 SFDEWFNTPFANTGGQDKIELTEEETLLVIRR--LHKVLRPFLLRRLKKDVEKDLPNKVE 1022
Query: 836 FVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFF-AGYQA--LAQIWNHPGILQ 891
V+ K S LQ +LY++ L + +N + + A Q L +I NHP + +
Sbjct: 1023 KVVKCKSSALQSKLYQQMLRYNMLYAGDPANGSVPVTIKNANNQIMQLKKICNHPFVYE 1081
Score = 140 (54.3 bits), Expect = 1.8e-31, Sum P(4) = 1.8e-31
Identities = 52/168 (30%), Positives = 78/168 (46%)
Query: 488 EETKRKIAIEKERQERLKSLQVQFSSKSK-LMNSVTLDGDLSAGASIEVLGDAITGYI-- 544
++T+ +E+ Q L SL + S+ K +++ G AS+E L D I
Sbjct: 700 KDTRITHLLEQTNQF-LDSLALAVQSQQKEAQDNLAYSGRAIEPASVEPLDDEKREKIDY 758
Query: 545 VNVVREKGEEAVRIPSS-ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTM 603
NV EE + PS + LK +Q+ G+++M V + L ILA M
Sbjct: 759 YNVAHRIKEEVTKQPSILVGGTLKEYQLKGLQWM----------VSLFNNHLNGILADEM 808
Query: 604 GLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
GLGKT Q I+ L T + V L++ P++ + NW EF KW PS
Sbjct: 809 GLGKTIQTISLL-TYLVEVKKIPGPFLVIVPLSTVTNWNLEFEKWAPS 855
Score = 48 (22.0 bits), Expect = 4.8e-23, Sum P(3) = 4.8e-23
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 485 ELGEETKRKIAIEKERQE----RLKS 506
+L EE +R +A+EK+RQE RLKS
Sbjct: 343 QLREEEQR-LALEKQRQELEQNRLKS 367
Score = 42 (19.8 bits), Expect = 1.8e-21, Sum P(4) = 1.8e-21
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLS 528
++D + E +I IE+E+ ERL+ Q+ ++ + L+ LS
Sbjct: 514 MEDIYVNREGYMQITIEQEK-ERLRK-QIDSLNEKDTEKKLELETQLS 559
Score = 38 (18.4 bits), Expect = 1.8e-31, Sum P(4) = 1.8e-31
Identities = 13/51 (25%), Positives = 20/51 (39%)
Query: 114 KVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDAN 164
K +G EI + P + K+ EEQR K ++E + N
Sbjct: 313 KSTGGTPEIPEKKKGKRGPKPKNPKKPTKKQLREEEQRLALEKQRQELEQN 363
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 203 (76.5 bits), Expect = 1.9e-31, Sum P(5) = 1.9e-31
Identities = 63/184 (34%), Positives = 92/184 (50%)
Query: 912 NMDY-NVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKE----LDYSGKMVLLL 966
N+D N + G K + +N +Q + + D + E Y E ++ SGKM LL
Sbjct: 576 NIDVLNAMTGSKNQMLNILMQLRK---CCNHPYLFDGIEEPPYIEGNHLIETSGKMSLLD 632
Query: 967 DILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSE 1026
+L + L+FSQ LD+I+ Y WK + R+DG T E
Sbjct: 633 KLLPRLKKENSRVLLFSQMTRLLDIIDDYCR-----------WKN-YPYLRIDGSTPGDE 680
Query: 1027 RQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRC 1086
RQ + +FNEP N + L+STRAG +GINL +A+ VI+ D +NP D+QA+ RA R
Sbjct: 681 RQVRINQFNEP-NSKYFIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRI 739
Query: 1087 MDKQ 1090
K+
Sbjct: 740 GQKK 743
Score = 182 (69.1 bits), Expect = 1.9e-31, Sum P(5) = 1.9e-31
Identities = 48/136 (35%), Positives = 76/136 (55%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ + +++ ++ + R+ +TG+PL NNL E + +++F+ +S E
Sbjct: 446 LVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMPKIFDNSEE 505
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F N F N + + N SE I+ Q L+ LK F+ R V++ LPPK I
Sbjct: 506 FDNLF-NISKISTNDNKQSE---IITQ----LHTILKPFMLRRLKVEVEQSLPPKREIYI 557
Query: 839 TVKLSPLQRRLYKRFL 854
V +S LQ++LY L
Sbjct: 558 FVGMSKLQKKLYSDIL 573
Score = 117 (46.2 bits), Expect = 1.9e-31, Sum P(5) = 1.9e-31
Identities = 35/122 (28%), Positives = 65/122 (53%)
Query: 553 EEAVRI--PSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQ 610
+EA+ + P +I+ +K +Q+ G+ ++++ + + K + ILA MGLGKT Q
Sbjct: 307 DEAIILKQPMNINGTMKPYQLEGLNWLYQ-----LYRFK-----INGILADEMGLGKTLQ 356
Query: 611 VIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRA 670
I+ L + N+ + ++I+ P + L NW +E KW P++ F ++D+R
Sbjct: 357 TISLLCYLRFNKNIK-KKSIIICPRSTLDNWYEEIKKW----CTPMKAFKYYG-NKDQRK 410
Query: 671 EL 672
EL
Sbjct: 411 EL 412
Score = 48 (22.0 bits), Expect = 1.9e-31, Sum P(5) = 1.9e-31
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 122 IEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMD 166
+ED + N+ D V I N+ ++ +++RK + EE+ M+
Sbjct: 93 VEDGNDNNHDKNVHRNIGNDTHVSY-DDKRKSYLDNNEENSEQMN 136
Score = 44 (20.5 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 10/60 (16%), Positives = 26/60 (43%)
Query: 766 DFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYE-QLKGFVQRMDMN 824
D +EG + + + + +E+G N + + +H+ Y+ + K ++ + N
Sbjct: 72 DITKEGNNMNENMMNRKLNSSVEDGNDNNHDKNVHRNIGNDTHVSYDDKRKSYLDNNEEN 131
Score = 37 (18.1 bits), Expect = 1.9e-31, Sum P(5) = 1.9e-31
Identities = 8/36 (22%), Positives = 21/36 (58%)
Query: 291 SDEADVVKDECSTKLEDHSVSPENINDAATDNSLHS 326
+D+++ D+ + +D++ E+ N+ DN+ H+
Sbjct: 202 NDDSNNHNDDSNNHNDDNNNHNEDNNNHNDDNNNHN 237
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 203 (76.5 bits), Expect = 1.9e-31, Sum P(5) = 1.9e-31
Identities = 63/184 (34%), Positives = 92/184 (50%)
Query: 912 NMDY-NVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKE----LDYSGKMVLLL 966
N+D N + G K + +N +Q + + D + E Y E ++ SGKM LL
Sbjct: 576 NIDVLNAMTGSKNQMLNILMQLRK---CCNHPYLFDGIEEPPYIEGNHLIETSGKMSLLD 632
Query: 967 DILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSE 1026
+L + L+FSQ LD+I+ Y WK + R+DG T E
Sbjct: 633 KLLPRLKKENSRVLLFSQMTRLLDIIDDYCR-----------WKN-YPYLRIDGSTPGDE 680
Query: 1027 RQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRC 1086
RQ + +FNEP N + L+STRAG +GINL +A+ VI+ D +NP D+QA+ RA R
Sbjct: 681 RQVRINQFNEP-NSKYFIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRI 739
Query: 1087 MDKQ 1090
K+
Sbjct: 740 GQKK 743
Score = 182 (69.1 bits), Expect = 1.9e-31, Sum P(5) = 1.9e-31
Identities = 48/136 (35%), Positives = 76/136 (55%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ + +++ ++ + R+ +TG+PL NNL E + +++F+ +S E
Sbjct: 446 LVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMPKIFDNSEE 505
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F N F N + + N SE I+ Q L+ LK F+ R V++ LPPK I
Sbjct: 506 FDNLF-NISKISTNDNKQSE---IITQ----LHTILKPFMLRRLKVEVEQSLPPKREIYI 557
Query: 839 TVKLSPLQRRLYKRFL 854
V +S LQ++LY L
Sbjct: 558 FVGMSKLQKKLYSDIL 573
Score = 117 (46.2 bits), Expect = 1.9e-31, Sum P(5) = 1.9e-31
Identities = 35/122 (28%), Positives = 65/122 (53%)
Query: 553 EEAVRI--PSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQ 610
+EA+ + P +I+ +K +Q+ G+ ++++ + + K + ILA MGLGKT Q
Sbjct: 307 DEAIILKQPMNINGTMKPYQLEGLNWLYQ-----LYRFK-----INGILADEMGLGKTLQ 356
Query: 611 VIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRA 670
I+ L + N+ + ++I+ P + L NW +E KW P++ F ++D+R
Sbjct: 357 TISLLCYLRFNKNIK-KKSIIICPRSTLDNWYEEIKKW----CTPMKAFKYYG-NKDQRK 410
Query: 671 EL 672
EL
Sbjct: 411 EL 412
Score = 48 (22.0 bits), Expect = 1.9e-31, Sum P(5) = 1.9e-31
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 122 IEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMD 166
+ED + N+ D V I N+ ++ +++RK + EE+ M+
Sbjct: 93 VEDGNDNNHDKNVHRNIGNDTHVSY-DDKRKSYLDNNEENSEQMN 136
Score = 44 (20.5 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 10/60 (16%), Positives = 26/60 (43%)
Query: 766 DFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYE-QLKGFVQRMDMN 824
D +EG + + + + +E+G N + + +H+ Y+ + K ++ + N
Sbjct: 72 DITKEGNNMNENMMNRKLNSSVEDGNDNNHDKNVHRNIGNDTHVSYDDKRKSYLDNNEEN 131
Score = 37 (18.1 bits), Expect = 1.9e-31, Sum P(5) = 1.9e-31
Identities = 8/36 (22%), Positives = 21/36 (58%)
Query: 291 SDEADVVKDECSTKLEDHSVSPENINDAATDNSLHS 326
+D+++ D+ + +D++ E+ N+ DN+ H+
Sbjct: 202 NDDSNNHNDDSNNHNDDNNNHNEDNNNHNDDNNNHN 237
>UNIPROTKB|B5MDQ0 [details] [associations]
symbol:ERCC6L "FLJ20105 protein, isoform CRA_a"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135749 EMBL:CH471213
HOGENOM:HOG000074172 HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD
UniGene:Hs.47558 HGNC:HGNC:20794 IPI:IPI00873388 SMR:B5MDQ0
IntAct:B5MDQ0 STRING:B5MDQ0 Ensembl:ENST00000373657 Uniprot:B5MDQ0
Length = 1127
Score = 252 (93.8 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 69/228 (30%), Positives = 116/228 (50%)
Query: 603 MGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLE 662
MGLGKT Q+IAFL + M +L + L++ P N+++ W +EF+KW P +RV
Sbjct: 1 MGLGKTVQIIAFL-SGMFDASL-VNHVLLIMPTNLINTWVKEFIKWTPG----MRVKTFH 54
Query: 663 DVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 722
S+D R L + + + GV + Y N ++ + R +E D ++ D
Sbjct: 55 GPSKDERTRNLNRIQQRNGVIITTYQMLIN-NWQQLSSFRG--QEFVW------DYVILD 105
Query: 723 EAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-FLGSSHEFRN 781
EAH IK + + + + R+ LTG+P+QNNL E + + DF +G LG+ F+
Sbjct: 106 EAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKM 165
Query: 782 RFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKK 828
++NPI + ++T + + + S L +K F++R +V KK
Sbjct: 166 EYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDVQKK 213
Score = 187 (70.9 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 49/137 (35%), Positives = 77/137 (56%)
Query: 956 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
++ SGKM+ L+D+L + G ++LVFSQS L++IE L + + +K
Sbjct: 333 MEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLL--------KNRHFKT---- 380
Query: 1016 YRLDGR-TESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPT 1074
R+DG T ER+K + F + NK L++T+ G +G+ L +A RV+I D SWNP
Sbjct: 381 LRIDGTVTHLLEREKRINLFQQ--NKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPA 438
Query: 1075 YDLQAIYRAWRCMDKQS 1091
D QA+ R +R K++
Sbjct: 439 TDAQAVDRVYRIGQKEN 455
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 189 (71.6 bits), Expect = 3.9e-31, Sum P(3) = 3.9e-31
Identities = 51/135 (37%), Positives = 78/135 (57%)
Query: 952 TYKELDY-SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWK 1010
T + L Y SGKMV+L +L G + L+FSQ LD++E Y +++
Sbjct: 481 TDEHLVYNSGKMVVLDKLLKRLKAQGSRVLIFSQMSRVLDILEDYC-----------VFR 529
Query: 1011 KGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGS 1070
+ K + R+DG T +R ++ +N+P +++ L++TRAG LGINL +A+ VI+ D
Sbjct: 530 EYK-YSRIDGGTAHEDRIAAIDEYNKPGSEKF-VFLLTTRAGGLGINLTTADIVILFDSD 587
Query: 1071 WNPTYDLQAIYRAWR 1085
WNP DLQA+ RA R
Sbjct: 588 WNPQADLQAMDRAHR 602
Score = 160 (61.4 bits), Expect = 3.9e-31, Sum P(3) = 3.9e-31
Identities = 42/150 (28%), Positives = 76/150 (50%)
Query: 706 REICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMV 765
RE H + + ++ DEAH IKN + Q ++ + R+ +TG+PLQNN+ E + ++
Sbjct: 298 REKSHLKKFAWEYIIIDEAHRIKNEESSLAQVIRLFNSRNRLLITGTPLQNNIHELWALL 357
Query: 766 DFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 825
+F+ G S F F GQ +++ ++ Q L+ L+ F+ R
Sbjct: 358 NFLLPDVFGDSEAFDQWFSG---EGQDSDT------VVQQ----LHRVLRPFLLRRVKAD 404
Query: 826 VKKDLPPKTVFVITVKLSPLQRRLYKRFLD 855
V+K L PK + +K++ +QR Y++ L+
Sbjct: 405 VEKSLLPKKEVNLYLKMTEMQRTWYQKILE 434
Score = 140 (54.3 bits), Expect = 3.9e-31, Sum P(3) = 3.9e-31
Identities = 43/144 (29%), Positives = 76/144 (52%)
Query: 559 PSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTA 618
P+ I ++ +Q+ G+ ++ + + G+ ILA MGLGKT Q I+FL
Sbjct: 179 PAFIQGTMRDYQIAGLNWL----------ISLHENGISGILADEMGLGKTLQTISFL-GY 227
Query: 619 MRSVNLGLRTA-LIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWR 677
+R + +G+ L++ P + L NWK+EF KW P + V +L+ +++ RA L+A+ R
Sbjct: 228 LRHI-MGITGPHLVIVPKSTLDNWKREFGKWTPE----VNVLVLQG-AKEERAALIAE-R 280
Query: 678 AKGGVFLIGYTAFRNLSFGK-HVK 700
F + T++ + K H+K
Sbjct: 281 LVDESFDVCITSYEMILREKSHLK 304
Score = 38 (18.4 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 144 LALSEEQRKKFRKVKEED-DA 163
L ++E QR ++K+ E+D DA
Sbjct: 419 LKMTEMQRTWYQKILEKDIDA 439
>UNIPROTKB|G4MNF9 [details] [associations]
symbol:MGG_06945 "Helicase" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:CM001231 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_003709685.1 ProteinModelPortal:G4MNF9
EnsemblFungi:MGG_06945T0 GeneID:2685118 KEGG:mgr:MGG_06945
Uniprot:G4MNF9
Length = 1103
Score = 249 (92.7 bits), Expect = 3.9e-31, Sum P(3) = 3.9e-31
Identities = 90/314 (28%), Positives = 146/314 (46%)
Query: 558 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 617
IP+ I+ L+ +QV G+ FM E + GCIL MGLGKT QV AFL
Sbjct: 186 IPAPIAQYLRDYQVDGVSFMHEAFVYQ----------RGCILGDDMGLGKTVQVAAFLTA 235
Query: 618 A------------MRSVN-LGLR--TALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLE 662
A MR V LG R L+V P +V+ NW+QE +W +++ +
Sbjct: 236 AFGKTGDFRDSKRMRKVKRLGRRYYKVLVVCPSSVMENWRQELARWGWWKVESYHGPGKD 295
Query: 663 DVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 722
DV ++ L V L +R + +E + + D +V D
Sbjct: 296 DVLDTAKSGRLE-------VMLTTPATYR------------LQKERVNTVSW--DAVVVD 334
Query: 723 EAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNR 782
E H IK R++ T+A+ +V RI LTG+ +QN E + ++++ G G+ E++
Sbjct: 335 ECHNIKERRSEITKAMTEVNALCRIGLTGTAIQNKYEELWTLLNWTNPGRFGTFGEWKTS 394
Query: 783 FQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG--FVQRMDMNVVKKDLPPKTVFVITV 840
P+ GQ N+T +++ + + + L + L F++RM +++ LP K V+
Sbjct: 395 ISRPLTLGQSHNATLQELSMARKTAKKLVQNLLPDYFLRRMK-SLIAHQLPKKRDRVVFC 453
Query: 841 KLSPLQRRLYKRFL 854
L+ LQ Y+RF+
Sbjct: 454 PLTDLQTTAYERFI 467
Score = 188 (71.2 bits), Expect = 3.9e-31, Sum P(3) = 3.9e-31
Identities = 55/149 (36%), Positives = 79/149 (53%)
Query: 942 DWWNDL--LHEHTYKELD--YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLS 997
D W L L + ++D + GK +L D+L GDK LVFS S+ L ++
Sbjct: 549 DKWEQLYKLRDSPLIQMDPEFCGKWRVLKDLLKFWEGNGDKVLVFSHSVKLLQVLR---- 604
Query: 998 KLPRPGKQGKLWKKGKDWYR-LDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGI 1056
L++ Y LDG ERQ++V+ FN + V LIST+AG +G+
Sbjct: 605 ---------ALFQTTHYSYSYLDGSLAIEERQQIVDDFNSDPQQFV--FLISTKAGGVGL 653
Query: 1057 NLHSANRVIIVDGSWNPTYDLQAIYRAWR 1085
N+ SAN+V+I D WNP++DLQA RA+R
Sbjct: 654 NITSANKVVIFDPHWNPSWDLQAQDRAYR 682
Score = 49 (22.3 bits), Expect = 3.9e-31, Sum P(3) = 3.9e-31
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 488 EETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGD 538
EE K EK++ + +S + + S KS+ N++T G +A + E + D
Sbjct: 49 EEEAEKERTEKKQAKGRRSAKKKKSIKSEPGNAITNHGRRNARSLAEAIRD 99
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 181 (68.8 bits), Expect = 5.4e-31, Sum P(3) = 5.4e-31
Identities = 48/140 (34%), Positives = 76/140 (54%)
Query: 952 TYKELDYSGKMVLLLD-ILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWK 1010
T + L Y+ + +LD +L G + L+FSQ LD++E Y +
Sbjct: 493 TDEHLVYNAAKLQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYC------------YF 540
Query: 1011 KGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGS 1070
+ ++ R+DG T +R + ++ +N P +K+ L++TRAG LGINL SA+ V++ D
Sbjct: 541 RNYEYCRIDGSTAHEDRIQAIDDYNAPDSKKF-VFLLTTRAGGLGINLTSADVVVLYDSD 599
Query: 1071 WNPTYDLQAIYRAWRCMDKQ 1090
WNP DLQA+ RA R K+
Sbjct: 600 WNPQADLQAMDRAHRIGQKK 619
Score = 174 (66.3 bits), Expect = 5.4e-31, Sum P(3) = 5.4e-31
Identities = 52/174 (29%), Positives = 86/174 (49%)
Query: 717 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 776
+ ++ DEAH IKN + +Q L++ + R+ +TG+PLQNNL E + +++F+ +
Sbjct: 319 EYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNNLHELWALLNFLLPDIFSDA 378
Query: 777 HEFRNRFQNPIENGQHTNSTSEDV-KIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV 835
+F + F + ST ED KI+ Q L+ L+ F+ R + V+ L PK
Sbjct: 379 QDFDDWFSS--------ESTEEDQDKIVKQ----LHTVLQPFLLRRIKSDVETSLLPKKE 426
Query: 836 FVITVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
+ V +S +Q++ YK+ L DL S E + Q L + NHP
Sbjct: 427 LNLYVGMSSMQKKWYKKILEKDLDAVNGSNGSKESKTRLLNIMMQ-LRKCCNHP 479
Score = 133 (51.9 bits), Expect = 5.4e-31, Sum P(3) = 5.4e-31
Identities = 37/117 (31%), Positives = 63/117 (53%)
Query: 559 PSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTA 618
P+ ++ +L+ +Q+ G+ W + S+ K K + ILA MGLGKT Q I+FL
Sbjct: 189 PAYVNGQLRPYQIQGVN--W---LVSLHKNK-----IAGILADEMGLGKTLQTISFL-GY 237
Query: 619 MRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAK 675
+R + L++ P + L+NW +E +W P + F+L+ ++ RAEL+ K
Sbjct: 238 LRYIEKIPGPFLVIAPKSTLNNWLREINRWTPD----VNAFILQG-DKEERAELIQK 289
Score = 39 (18.8 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 134 VADAIANEKELAL----SEEQRKKFRKVKEED-DA 163
V ++ +KEL L S Q+K ++K+ E+D DA
Sbjct: 417 VETSLLPKKELNLYVGMSSMQKKWYKKILEKDLDA 451
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 182 (69.1 bits), Expect = 6.4e-31, Sum P(3) = 6.4e-31
Identities = 51/127 (40%), Positives = 66/127 (51%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL K L+F Q + ++E Y + +G + RL
Sbjct: 412 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAY------------RGFKYLRL 459
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T++ +R L++ FNEP L+STRAG LG+NL SA+ VII D WNP DLQ
Sbjct: 460 DGTTKAEDRGMLLKTFNEP-GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQ 518
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 519 AQDRAHR 525
Score = 177 (67.4 bits), Expect = 6.4e-31, Sum P(3) = 6.4e-31
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RR+ LTG+PLQN L E + +++F+ S
Sbjct: 211 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCS 270
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 271 TFEQWFNAPFAMTGEKVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVEAQLPEKVEY 327
Query: 837 VITVKLSPLQRRLYKRFLDLHG--FTNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S LQR LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 328 VIKCDMSALQRVLY-RHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 386
Score = 126 (49.4 bits), Expect = 6.4e-31, Sum P(3) = 6.4e-31
Identities = 40/140 (28%), Positives = 65/140 (46%)
Query: 517 LMNSVTLDGDLSAGASIEVLGDAITGY--IVNVVREKGEEAVRIPSSISAKLKAHQVVGI 574
++ + D D G S + L + Y + + V E+ ++ + ++ LK +Q+ G+
Sbjct: 39 IIENAKQDVDDEYGVS-QALARGLQSYYAVAHAVTERVDKQSAL--MVNGVLKQYQIKGL 95
Query: 575 RFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 634
++ V + L ILA MGLGKT Q IA + M + LI+ P
Sbjct: 96 EWL----------VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRIN-GPFLIIVP 144
Query: 635 VNVLHNWKQEFMKWRPSELK 654
++ L NW EF KW PS +K
Sbjct: 145 LSTLSNWAYEFDKWAPSVVK 164
Score = 40 (19.1 bits), Expect = 4.9e-22, Sum P(3) = 4.9e-22
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 714 DGPDILVCDEAHMIKNTRAD 733
D D+ D H+I+N + D
Sbjct: 27 DSDDVSEVDARHIIENAKQD 46
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 190 (71.9 bits), Expect = 6.7e-31, Sum P(3) = 6.7e-31
Identities = 56/149 (37%), Positives = 77/149 (51%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKMV+L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 488 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC-----------MWR-GYEYCRL 535
Query: 1019 DGRTESSERQKL-----------------VERFNEPLNKRVKCTLISTRAGSLGINLHSA 1061
DG+T ER+++ +E FN P N ++STRAG LGINL SA
Sbjct: 536 DGQTPHEEREEILKDFKIIFHEYQGSNEAIEAFNIP-NSSKFIFMLSTRAGGLGINLASA 594
Query: 1062 NRVIIVDGSWNPTYDLQAIYRAWRCMDKQ 1090
+ VI+ D WNP DLQA+ RA R K+
Sbjct: 595 DVVILYDSDWNPQVDLQAMDRAHRIGQKK 623
Score = 179 (68.1 bits), Expect = 6.7e-31, Sum P(3) = 6.7e-31
Identities = 55/171 (32%), Positives = 85/171 (49%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ ++ ++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 311 LVIDEAHRIKNEKSKLSEIVRDFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAED 370
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F + F T + D K++ +R H + LK F+ R V+K LPPK I
Sbjct: 371 FDSWFD--------TKNCLGDQKLV-ERLHTV---LKPFLLRRIKTDVEKSLPPKKEIKI 418
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
+ LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 419 YLGLSKMQREWYTKILMKDID-VLNSAGKMDKMR--LLNILMQLRKCCNHP 466
Score = 117 (46.2 bits), Expect = 6.7e-31, Sum P(3) = 6.7e-31
Identities = 31/82 (37%), Positives = 41/82 (50%)
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
+ G+ ILA MGLGKT Q IA L N+ +++ P + LHNW EF +W PS
Sbjct: 202 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPS 260
Query: 652 ELKPLRVFMLEDVSRDRRAELL 673
LRV +D RA +
Sbjct: 261 ----LRVICFVG-DKDARAAFI 277
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 210 (79.0 bits), Expect = 8.6e-31, Sum P(3) = 8.6e-31
Identities = 53/135 (39%), Positives = 75/135 (55%)
Query: 956 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
+D SGKMV+L +L G + L+FSQ LDL+E + W + ++
Sbjct: 431 VDNSGKMVVLDKLLMKFKEQGSRVLIFSQFSRMLDLLEDFC------------WWRHYEY 478
Query: 1016 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1075
RLDG T +R +E +N P +K+ +++TRAG LGINL +A+ VII D WNP
Sbjct: 479 CRLDGSTPHEDRSNAIEAYNAPDSKKF-IFMLTTRAGGLGINLATADVVIIYDSDWNPQS 537
Query: 1076 DLQAIYRAWRCMDKQ 1090
DLQA+ RA R K+
Sbjct: 538 DLQAMDRAHRIGQKK 552
Score = 168 (64.2 bits), Expect = 8.6e-31, Sum P(3) = 8.6e-31
Identities = 43/136 (31%), Positives = 76/136 (55%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
++ DEAH IKN ++ ++ ++++ + R+ +TG+PLQNNL E + +++F+ SS +
Sbjct: 257 IIIDEAHRIKNEKSKLSETVRELNSENRLLITGTPLQNNLHELWALLNFLLPDIFTSSDD 316
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F + F N +G +T+ + QR H + L+ F+ R + V+K L PK +
Sbjct: 317 FDSWFSNDAMSG-NTD--------LVQRLH---KVLQPFLLRRIKSDVEKSLLPKKEVKV 364
Query: 839 TVKLSPLQRRLYKRFL 854
V LS +QR Y + L
Sbjct: 365 YVGLSKMQREWYTKVL 380
Score = 105 (42.0 bits), Expect = 8.6e-31, Sum P(3) = 8.6e-31
Identities = 23/54 (42%), Positives = 29/54 (53%)
Query: 598 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
ILA MGLGKT Q I+ + M+ L++ P + L NW EF KW PS
Sbjct: 154 ILADEMGLGKTLQTISMI-GYMKHYKNKASPHLVIVPKSTLQNWANEFKKWCPS 206
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 203 (76.5 bits), Expect = 9.3e-31, Sum P(4) = 9.3e-31
Identities = 57/176 (32%), Positives = 88/176 (50%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
L+ DEAH+IKN ++ Q L +RRI LTG+PLQN+LME + ++ F+ S E
Sbjct: 661 LILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQE 720
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F++ F NPI G + +++++ L+ L+ F+ R V+K LP K VI
Sbjct: 721 FKDWFCNPIA-GMVEGQEKINKEVIDR----LHNVLRPFLLRRLKRDVEKQLPSKHEHVI 775
Query: 839 TVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQ---IWNHPGILQ 891
+LS QR LY+ F+ + SFF + Q + NHP + +
Sbjct: 776 FCRLSKRQRNLYEDFI-----ASTETQATLTSGSFFGMISIIMQLRKVCNHPDLFE 826
Score = 173 (66.0 bits), Expect = 9.3e-31, Sum P(4) = 9.3e-31
Identities = 46/126 (36%), Positives = 68/126 (53%)
Query: 960 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLD 1019
GK+ L +L G ++L+F+Q LD++E +++ L+ G + RLD
Sbjct: 1075 GKLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFIN----------LY--GYTYMRLD 1122
Query: 1020 GRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQA 1079
G T ERQ L++RFN N ++ ++STR+G +GINL A+ VI D WNP D QA
Sbjct: 1123 GSTPPEERQTLMQRFNT--NPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQA 1180
Query: 1080 IYRAWR 1085
R R
Sbjct: 1181 QDRCHR 1186
Score = 116 (45.9 bits), Expect = 9.3e-31, Sum P(4) = 9.3e-31
Identities = 31/69 (44%), Positives = 40/69 (57%)
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGL-RTALIVTPVNVLHNWKQEFMKWRP 650
+K L ILA MGLGKT IA L A + + G+ LIV P +V+ NW+ EF+KW P
Sbjct: 552 EKKLNGILADEMGLGKTIMTIALL--AHLACDKGIWGPHLIVVPTSVMLNWETEFLKWCP 609
Query: 651 SELKPLRVF 659
+ K L F
Sbjct: 610 A-FKILTYF 617
Score = 51 (23.0 bits), Expect = 9.3e-31, Sum P(4) = 9.3e-31
Identities = 29/122 (23%), Positives = 51/122 (41%)
Query: 116 SGSVEEIEDVDGNSDDPFV--ADAIANEKELALSEEQRKKFRKVKEEDDANMDXXXXXXX 173
SGS E ED D S+D D I +++ E++++ ++ E D ++
Sbjct: 204 SGSPELDEDYDLKSEDETEDDEDTIEEDEKHFTKRERQEELEALQNEVDLPVEELLRRYT 263
Query: 174 XXXXXXXISKQKEIGSVDWTIEDSAVETRPLVDASK-SLSNKKTDDGDMPGNNNEVALQN 232
S K+ + T S V T P+ D ++ +L++ D G+ NN A +
Sbjct: 264 SGRVSRETSPVKDENEDNLT-SVSRV-TSPVKDENQDNLASVGQDHGE--DKNNLAASEE 319
Query: 233 LE 234
E
Sbjct: 320 TE 321
Score = 48 (22.0 bits), Expect = 1.9e-30, Sum P(4) = 1.9e-30
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 482 DDAELGEETKRKIAIEKERQERLKSLQ 508
DD + EE ++ ++ERQE L++LQ
Sbjct: 223 DDEDTIEEDEKHFT-KRERQEELEALQ 248
Score = 48 (22.0 bits), Expect = 5.0e-18, Sum P(4) = 5.0e-18
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 933 KNDDGFFQKDWWNDLLHEHTYKE 955
+N+ GF +K+W +L H YKE
Sbjct: 1414 ENEAGFEEKEW--ELDHIEKYKE 1434
Score = 43 (20.2 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 713 QDGPDILVCDEAHMIKNTRADTTQALK 739
+D D + DE H K R + +AL+
Sbjct: 222 EDDEDTIEEDEKHFTKRERQEELEALQ 248
Score = 41 (19.5 bits), Expect = 9.9e-30, Sum P(4) = 9.9e-30
Identities = 23/107 (21%), Positives = 49/107 (45%)
Query: 120 EEIEDVD---GNSDDPFVADAIANEKELALS--EEQRKKFRKVKEEDDANMDXXXXXXXX 174
+E EDVD N ++ +A E+ELA + E+ ++ +++E + ++
Sbjct: 368 DEQEDVDFVLANGEEKDDEATLAVEEELAKADNEDHVEEIALLQKESEMPIEVLLARYKE 427
Query: 175 XXXXXXISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDM 221
IS+ + S + EDS V++ D ++ ++ D+ D+
Sbjct: 428 DFGGKDISEDESESSFAVS-EDSIVDS----DENRQQADLDDDNVDL 469
Score = 37 (18.1 bits), Expect = 2.5e-29, Sum P(4) = 2.5e-29
Identities = 23/114 (20%), Positives = 42/114 (36%)
Query: 136 DAIANEKELALSEEQRKKFR-KVKEEDDANMDXXXXXXXXXXXXXXISKQKEIGSVDWTI 194
+A+ NE +L + E R+ +V E D K + ++
Sbjct: 245 EALQNEVDLPVEELLRRYTSGRVSRETSPVKDENEDNLTSVSRVTSPVKDENQDNLASVG 304
Query: 195 EDSAVETRPLVDASKSLSNKKTD-DGDMPGNN--NEVALQNLETGVLESSVKER 245
+D + L + ++ N D G+ +E +LE G+ +SVK R
Sbjct: 305 QDHGEDKNNLAASEETEGNPSVRRSNDSYGHLAISETHSHDLEPGMTTASVKSR 358
Score = 37 (18.1 bits), Expect = 7.6e-07, Sum P(3) = 7.6e-07
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 630 LIVTPVNVLHNWKQEFMKWR 649
LI+ +++ NWK + +W+
Sbjct: 661 LILDEAHLIKNWKSQ--RWQ 678
>WB|WBGene00000803 [details] [associations]
symbol:csb-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0004427 "inorganic
diphosphatase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006796 "phosphate-containing compound metabolic
process" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0009650 "UV protection"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009650
GeneTree:ENSGT00590000083118 KO:K10841 EMBL:Z81089 PIR:T22595
RefSeq:NP_510607.2 ProteinModelPortal:Q93781 SMR:Q93781
EnsemblMetazoa:F53H4.1 GeneID:181674 KEGG:cel:CELE_F53H4.1
UCSC:F53H4.1 CTD:181674 WormBase:F53H4.1 HOGENOM:HOG000020742
InParanoid:Q93781 OMA:GDICNHP NextBio:914906 Uniprot:Q93781
Length = 957
Score = 286 (105.7 bits), Expect = 9.8e-31, Sum P(2) = 9.8e-31
Identities = 99/319 (31%), Positives = 143/319 (44%)
Query: 589 KSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL-----GLRTALIVTPVNVLHNWKQ 643
K D G ILA MGLGKT Q + FL + + GL TALIV V+++ W +
Sbjct: 207 KKTDHRSGGILADEMGLGKTIQSVVFLRSIQETARTHYKTTGLDTALIVCHVSIIAQWIK 266
Query: 644 EFMKWRPSELKPLRVFML---------EDV--SRDRRAELLAKWRAKGGVFLIGYTAFRN 692
E +W P RVF+L ED S R+ + K G + L Y+ F
Sbjct: 267 ELNQWFPKA----RVFLLHSHCSTGRQEDYVGSIFRKLQRRRKEYPDGAIILTTYSLFTK 322
Query: 693 LSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGS 752
L K + + H Q +++ DE H I+N + A++++ +R LTG+
Sbjct: 323 LK--KPI--------VKHLWQ----VVILDEGHYIRNENTKCSIAMRKLMTTQRFILTGT 368
Query: 753 PLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYE 812
P QN L E++ +VDFV G L S F F + I G + N + E + L+
Sbjct: 369 PFQNRLSEFWKLVDFVHPGRLSDSATFHRNFTHIINAGANLNCSPEAAAKAYECLVALHI 428
Query: 813 QLKGFVQRMDMNVVKK--DLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIR 870
+K + R K+ LP K V++ +LS QRRLY + + H N+ + R
Sbjct: 429 AVKPLILRRLQEDHKEVLQLPEKQEIVLSCELSKRQRRLYMEYGNSHQ-VNEIIER---R 484
Query: 871 KSFFAGYQALAQIWNHPGI 889
F G L I NHPGI
Sbjct: 485 LKAFVGINHLTNICNHPGI 503
Score = 144 (55.7 bits), Expect = 9.8e-31, Sum P(2) = 9.8e-31
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 1008 LWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIV 1067
L +KG L G ++ R K++++F + ++ +K L++TRAG LG+NL AN+VII
Sbjct: 558 LAEKGIKCVSLTGADSAAARPKIIKKFEDDVS--IKVFLMTTRAGGLGLNLTCANKVIIF 615
Query: 1068 DGSWNPTYDLQAIYRAWR 1085
D WNP D QA R +R
Sbjct: 616 DPDWNPQADNQAKNRIYR 633
Score = 38 (18.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 636 NVLHNWKQEFMKW 648
N LH ++QE ++W
Sbjct: 192 NKLHKFQQEGVEW 204
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 192 (72.6 bits), Expect = 9.8e-31, Sum P(3) = 9.8e-31
Identities = 51/140 (36%), Positives = 78/140 (55%)
Query: 952 TYKELDY-SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWK 1010
T + L Y SGKM++L +L G + L+FSQ LD++E Y +
Sbjct: 444 TDEHLVYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYC------------YF 491
Query: 1011 KGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGS 1070
+ ++ R+DG T +R + ++ +N P +++ L++TRAG LGINL SA+ VI+ D
Sbjct: 492 RDYEYCRIDGSTSHEDRIEAIDEYNAPDSEKF-IFLLTTRAGGLGINLTSADIVILYDSD 550
Query: 1071 WNPTYDLQAIYRAWRCMDKQ 1090
WNP DLQA+ RA R K+
Sbjct: 551 WNPQADLQAMDRAHRIGQKK 570
Score = 170 (64.9 bits), Expect = 9.8e-31, Sum P(3) = 9.8e-31
Identities = 48/174 (27%), Positives = 82/174 (47%)
Query: 717 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 776
+ +V DEAH IKN + ++ ++ + R+ +TG+PLQNNL E + +++F+ G S
Sbjct: 262 EYIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDS 321
Query: 777 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHI--LYEQLKGFVQRMDMNVVKKDLPPKT 834
+F F N Q++ E+ K Q + L++ L F+ R V+K L PK
Sbjct: 322 DQFDEAFDN-----QNSEELDEEEKQRRQDKAVSELHQLLSPFLLRRVKADVEKSLLPKI 376
Query: 835 VFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
+ + ++ +Q YKR L+ N V + + L + NHP
Sbjct: 377 ETNVYIGMTDMQVEWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHP 430
Score = 122 (48.0 bits), Expect = 9.8e-31, Sum P(3) = 9.8e-31
Identities = 41/132 (31%), Positives = 66/132 (50%)
Query: 559 PSSIS-AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 617
PS I KL+ +Q+ G+ W +I SG ILA MGLGKT Q I+FL
Sbjct: 131 PSYIKEGKLREYQIQGLN--W--LISLYENRLSG------ILADEMGLGKTLQTISFL-G 179
Query: 618 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAK-- 675
+R + +++ P + L NW++EF KW P + V +L+ +++RA ++
Sbjct: 180 YLRYIKHIDGPFIVIVPKSTLDNWRREFAKWTPD----VNVVVLQG-DKEQRASIIKDQL 234
Query: 676 WRAKGGVFLIGY 687
+ AK V + +
Sbjct: 235 YTAKFDVLITSF 246
Score = 48 (22.0 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 122 IEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKE 159
+ DV G+SD A N +EL E+QR++ + V E
Sbjct: 314 LPDVFGDSDQFDEAFDNQNSEELDEEEKQRRQDKAVSE 351
Score = 41 (19.5 bits), Expect = 2.3e-22, Sum P(3) = 2.3e-22
Identities = 22/91 (24%), Positives = 39/91 (42%)
Query: 510 QFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAH 569
+F+ + +N V L GD ASI + D + +V+ E +R S++
Sbjct: 206 EFAKWTPDVNVVVLQGDKEQRASI--IKDQLYTAKFDVLITSFEMILREKSALQ------ 257
Query: 570 QVVGIRFMWENII-QSIRKVKSGDKGLGCIL 599
+F WE I+ ++K+ D L I+
Sbjct: 258 -----KFRWEYIVVDEAHRIKNEDSSLSKII 283
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 192 (72.6 bits), Expect = 9.8e-31, Sum P(3) = 9.8e-31
Identities = 51/140 (36%), Positives = 78/140 (55%)
Query: 952 TYKELDY-SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWK 1010
T + L Y SGKM++L +L G + L+FSQ LD++E Y +
Sbjct: 444 TDEHLVYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYC------------YF 491
Query: 1011 KGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGS 1070
+ ++ R+DG T +R + ++ +N P +++ L++TRAG LGINL SA+ VI+ D
Sbjct: 492 RDYEYCRIDGSTSHEDRIEAIDEYNAPDSEKF-IFLLTTRAGGLGINLTSADIVILYDSD 550
Query: 1071 WNPTYDLQAIYRAWRCMDKQ 1090
WNP DLQA+ RA R K+
Sbjct: 551 WNPQADLQAMDRAHRIGQKK 570
Score = 170 (64.9 bits), Expect = 9.8e-31, Sum P(3) = 9.8e-31
Identities = 48/174 (27%), Positives = 82/174 (47%)
Query: 717 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 776
+ +V DEAH IKN + ++ ++ + R+ +TG+PLQNNL E + +++F+ G S
Sbjct: 262 EYIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDS 321
Query: 777 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHI--LYEQLKGFVQRMDMNVVKKDLPPKT 834
+F F N Q++ E+ K Q + L++ L F+ R V+K L PK
Sbjct: 322 DQFDEAFDN-----QNSEELDEEEKQRRQDKAVSELHQLLSPFLLRRVKADVEKSLLPKI 376
Query: 835 VFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
+ + ++ +Q YKR L+ N V + + L + NHP
Sbjct: 377 ETNVYIGMTDMQVEWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHP 430
Score = 122 (48.0 bits), Expect = 9.8e-31, Sum P(3) = 9.8e-31
Identities = 41/132 (31%), Positives = 66/132 (50%)
Query: 559 PSSIS-AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 617
PS I KL+ +Q+ G+ W +I SG ILA MGLGKT Q I+FL
Sbjct: 131 PSYIKEGKLREYQIQGLN--W--LISLYENRLSG------ILADEMGLGKTLQTISFL-G 179
Query: 618 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAK-- 675
+R + +++ P + L NW++EF KW P + V +L+ +++RA ++
Sbjct: 180 YLRYIKHIDGPFIVIVPKSTLDNWRREFAKWTPD----VNVVVLQG-DKEQRASIIKDQL 234
Query: 676 WRAKGGVFLIGY 687
+ AK V + +
Sbjct: 235 YTAKFDVLITSF 246
Score = 48 (22.0 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 122 IEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKE 159
+ DV G+SD A N +EL E+QR++ + V E
Sbjct: 314 LPDVFGDSDQFDEAFDNQNSEELDEEEKQRRQDKAVSE 351
Score = 41 (19.5 bits), Expect = 2.3e-22, Sum P(3) = 2.3e-22
Identities = 22/91 (24%), Positives = 39/91 (42%)
Query: 510 QFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAH 569
+F+ + +N V L GD ASI + D + +V+ E +R S++
Sbjct: 206 EFAKWTPDVNVVVLQGDKEQRASI--IKDQLYTAKFDVLITSFEMILREKSALQ------ 257
Query: 570 QVVGIRFMWENII-QSIRKVKSGDKGLGCIL 599
+F WE I+ ++K+ D L I+
Sbjct: 258 -----KFRWEYIVVDEAHRIKNEDSSLSKII 283
>ASPGD|ASPL0000055935 [details] [associations]
symbol:AN0855 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0032392 "DNA geometric change"
evidence=IEA] [GO:0045144 "meiotic sister chromatid segregation"
evidence=IEA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
EMBL:AACD01000013 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K10877 HOGENOM:HOG000204521 OMA:NTENTRT
OrthoDB:EOG4CVKG1 RefSeq:XP_658459.1 ProteinModelPortal:Q5BF25
STRING:Q5BF25 EnsemblFungi:CADANIAT00001803 GeneID:2876630
KEGG:ani:AN0855.2 Uniprot:Q5BF25
Length = 1011
Score = 277 (102.6 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 88/311 (28%), Positives = 143/311 (45%)
Query: 594 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 653
G G ILA MGLGKT Q I L+T ++ N A ++ ++ WR
Sbjct: 318 GEGAILADDMGLGKTLQTITLLWTLLKQ-NPIYEAAPVIKKALIVCPVTL-INNWRREFR 375
Query: 654 KPL---RVFMLEDVSRDRRAELLAKWRAKG-GVFLIGYTAFRNLSFGKHVKDRNMAREIC 709
K L R+ + V D+R L K + ++GY R++ G +AR
Sbjct: 376 KWLGNERIGVF--VFDDKRKRLTDFTMGKAYSIMIVGYEKLRSVQEG-------LARG-- 424
Query: 710 HALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 769
+G DI++ DE H +K + + QA++ + +RI L+G+P+QN+L E++ VD V
Sbjct: 425 ----NGVDIVIADEGHRLKTLQNKSGQAIQSLNATKRIILSGTPIQNDLKEFFAAVDLVN 480
Query: 770 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD 829
G LGS F F+ PI + +T +D++ R+ L E F+ R +++
Sbjct: 481 PGVLGSFKSFIKEFEGPIVRSRQPEATEKDIEKGEARNEELRELTSQFMLRRTADILADY 540
Query: 830 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGI 889
LPPKT +V+ K + Q ++Y+ L F ++E + L ++ N P +
Sbjct: 541 LPPKTEYVLFCKPTNTQAKIYQNVLASPVFQGALGNSESALQLI----TILKKLCNSPSL 596
Query: 890 LQLTKDKGYPS 900
L L PS
Sbjct: 597 LSLKDANEKPS 607
Score = 177 (67.4 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
Identities = 51/153 (33%), Positives = 82/153 (53%)
Query: 551 KGEEAVRIP-SSISAK-LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKT 608
KG+ V + I AK L+ HQ G++F++E + +R G G ILA MGLGKT
Sbjct: 278 KGKRIVDVVVDPILAKHLRPHQREGVKFLYE-CVMGMRSFN----GEGAILADDMGLGKT 332
Query: 609 FQVIAFLYTAMRSVNLG-----LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLED 663
Q I L+T ++ + ++ ALIV PV +++NW++EF KW +E + VF+ +D
Sbjct: 333 LQTITLLWTLLKQNPIYEAAPVIKKALIVCPVTLINNWRREFRKWLGNER--IGVFVFDD 390
Query: 664 VSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFG 696
R R + +A + ++GY R++ G
Sbjct: 391 -KRKRLTDF-TMGKAYS-IMIVGYEKLRSVQEG 420
Score = 154 (59.3 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 44/128 (34%), Positives = 66/128 (51%)
Query: 959 SGKMVLLLDILT-MCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYR 1017
S K+ +L +L + ++ +K ++ S TLDL+ LS L P + R
Sbjct: 630 SAKIRVLDQLLHYLRTSTSEKVVLVSNYTSTLDLLANLLSSLSLP------------FLR 677
Query: 1018 LDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDL 1077
LDG T + +RQ LVE FN L+S +AG G+NL A+R+++ D WNP D+
Sbjct: 678 LDGSTPAQKRQSLVEDFNRHPASTCFAFLLSAKAGGTGLNLIGASRLVLFDVDWNPATDI 737
Query: 1078 QAIYRAWR 1085
QA+ R R
Sbjct: 738 QAMARIHR 745
>SGD|S000000966 [details] [associations]
symbol:CHD1 "Chromatin remodeler that regulates various
aspects of transcription" species:4932 "Saccharomyces cerevisiae"
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0042766
"nucleosome mobilization" evidence=IDA] [GO:0000182 "rDNA binding"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IDA] [GO:0000124 "SAGA complex" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IPI] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0031490 "chromatin DNA binding"
evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IDA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IGI;IMP] [GO:0071894 "histone H2B conserved C-terminal
lysine ubiquitination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=IDA]
[GO:2000104 "negative regulation of DNA-dependent DNA replication"
evidence=IGI] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SGD:S000000966 Pfam:PF00385 GO:GO:0005739
GO:GO:0005524 GO:GO:2000104 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:BK006939 GO:GO:0000124 GO:GO:0046695 GO:GO:0004386
GO:GO:0034401 GO:GO:0006368 GO:GO:0035064 GO:GO:0031490
GO:GO:0042766 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
GO:GO:0016584 EMBL:U18917 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GO:GO:0006363 GO:GO:0008094 GO:GO:0006369
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 PIR:S30818 RefSeq:NP_011091.1
PDB:2DY7 PDB:2DY8 PDB:2H1E PDB:2XB0 PDB:3MWY PDB:3TED PDBsum:2DY7
PDBsum:2DY8 PDBsum:2H1E PDBsum:2XB0 PDBsum:3MWY PDBsum:3TED
ProteinModelPortal:P32657 SMR:P32657 DIP:DIP-6362N IntAct:P32657
MINT:MINT-618890 STRING:P32657 PaxDb:P32657 PeptideAtlas:P32657
EnsemblFungi:YER164W GeneID:856911 KEGG:sce:YER164W CYGD:YER164w
OMA:IKWQFMA OrthoDB:EOG4TF3TB SABIO-RK:P32657
EvolutionaryTrace:P32657 NextBio:983353 Genevestigator:P32657
GermOnline:YER164W GO:GO:0030874 GO:GO:0000182 GO:GO:0071441
GO:GO:2000616 GO:GO:0001178 Uniprot:P32657
Length = 1468
Score = 226 (84.6 bits), Expect = 1.2e-30, Sum P(3) = 1.2e-30
Identities = 85/271 (31%), Positives = 127/271 (46%)
Query: 591 GDKGLGCILAHTMGLGKTFQVIAFLYTAM--RSVNLGLRTALIVTPVNVLHNWKQEFMKW 648
GD G ILA MGLGKT Q +AF+ + R N G +IV P++ + W F KW
Sbjct: 394 GDNG---ILADEMGLGKTVQTVAFISWLIFARRQN-GPH--IIVVPLSTMPAWLDTFEKW 447
Query: 649 RPSELKPLRVFMLEDVSRD--RRAELLAKWRAKGGV---FLIGYTAFRNLSFGKHVKDRN 703
P +L + +M SRD R E RAKG F + T + + +KDR
Sbjct: 448 AP-DLNCI-CYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYI-----LKDRA 500
Query: 704 MAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYC 763
I + DEAH +KN + ++L K R+ +TG+PLQNN+ E
Sbjct: 501 ELGSIKW------QFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAA 554
Query: 764 MVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDM 823
+V+F+ G RF I+ Q + ++D + + H L+ +++ F+ R
Sbjct: 555 LVNFLMPG----------RFT--ID--QEIDFENQDEE-QEEYIHDLHRRIQPFILRRLK 599
Query: 824 NVVKKDLPPKTVFVITVKLSPLQRRLYKRFL 854
V+K LP KT ++ V+LS +Q YK L
Sbjct: 600 KDVEKSLPSKTERILRVELSDVQTEYYKNIL 630
Score = 221 (82.9 bits), Expect = 1.2e-30, Sum P(3) = 1.2e-30
Identities = 63/175 (36%), Positives = 92/175 (52%)
Query: 916 NVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYS-GKMVLLLDILTMCSN 974
N++ K + + +L ++ QK + E+ + L S GKMVLL +LT
Sbjct: 650 NIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKK 709
Query: 975 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERF 1034
G + L+FSQ + LD++ YLS KG ++ RLDG S++R+ ++ F
Sbjct: 710 DGHRVLIFSQMVRMLDILGDYLSI------------KGINFQRLDGTVPSAQRRISIDHF 757
Query: 1035 NEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDK 1089
N P + L+STRAG LGINL +A+ V+I D WNP DLQA+ RA R K
Sbjct: 758 NSP-DSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQK 811
Score = 190 (71.9 bits), Expect = 6.7e-27, Sum P(3) = 6.7e-27
Identities = 74/237 (31%), Positives = 109/237 (45%)
Query: 555 AVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAF 614
+V+ P +L+ Q+ GI W + S GD G ILA MGLGKT Q +AF
Sbjct: 365 SVQPPFIKGGELRDFQLTGIN--WMAFLWS-----KGDNG---ILADEMGLGKTVQTVAF 414
Query: 615 LYTAM--RSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRD--RRA 670
+ + R N G +IV P++ + W F KW P +L + +M SRD R
Sbjct: 415 ISWLIFARRQN-GPH--IIVVPLSTMPAWLDTFEKWAP-DLNCI-CYMGNQKSRDTIREY 469
Query: 671 ELLAKWRAKGGV---FLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMI 727
E RAKG F + T + + +KDR I + DEAH +
Sbjct: 470 EFYTNPRAKGKKTMKFNVLLTTYEYI-----LKDRAELGSIKW------QFMAVDEAHRL 518
Query: 728 KNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-F-LGSSHEFRNR 782
KN + ++L K R+ +TG+PLQNN+ E +V+F+ G F + +F N+
Sbjct: 519 KNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ 575
Score = 40 (19.1 bits), Expect = 1.2e-30, Sum P(3) = 1.2e-30
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 116 SGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDD 162
SG E+ ED + DD + I + S + K K K + +
Sbjct: 72 SGEDEDEEDFE--EDDDYYGSPIKQNRSKPKSRTKSKSKSKPKSQSE 116
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 198 (74.8 bits), Expect = 1.6e-30, Sum P(4) = 1.6e-30
Identities = 49/131 (37%), Positives = 72/131 (54%)
Query: 955 ELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKD 1014
+ D +GK+ L +L G + L+F+Q LD++E +L+ G L+
Sbjct: 2026 QYDCAGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTY------HGHLY----- 2074
Query: 1015 WYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPT 1074
RLDG T +RQ L+ERFN +KR+ C ++STR+G +G+NL A+ V+ D WNPT
Sbjct: 2075 -LRLDGSTRVEQRQALMERFNA--DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPT 2131
Query: 1075 YDLQAIYRAWR 1085
D QA R R
Sbjct: 2132 MDAQAQDRCHR 2142
Score = 189 (71.6 bits), Expect = 1.6e-30, Sum P(4) = 1.6e-30
Identities = 54/171 (31%), Positives = 85/171 (49%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
L+ DEA IKN ++ Q+L QRR+ LTG+PLQN+LME + ++ F+ S E
Sbjct: 753 LILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHRE 812
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F+ F NP+ G S + ++ + L++ L+ F+ R V+K +P K VI
Sbjct: 813 FKEWFSNPL-TGMIEGSQEYNEGLVKR----LHKVLRPFLLRRVKVDVEKQMPKKYEHVI 867
Query: 839 TVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGI 889
+LS QR LY F+ T + ++ S L ++ NHP +
Sbjct: 868 RCRLSKRQRCLYDDFM-AQTTTKETLATGHFM-SVINILMQLRKVCNHPNL 916
Score = 117 (46.2 bits), Expect = 1.6e-30, Sum P(4) = 1.6e-30
Identities = 38/135 (28%), Positives = 64/135 (47%)
Query: 558 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL-Y 616
IP + +L+ +Q +G+ ++ V +K L ILA MGLGKT Q I+ L +
Sbjct: 620 IPLLLRGQLREYQHIGLDWL----------VTMYEKKLNGILADEMGLGKTIQTISLLAH 669
Query: 617 TAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKW 676
A N G LI+ P +V+ NW+ E +W PS ++ ++R+ + W
Sbjct: 670 LACEKGNWGPH--LIIVPTSVMLNWEMELKRWCPS----FKILTYYGAQKERKLKRQG-W 722
Query: 677 RAKGGVFLIGYTAFR 691
K F + T+++
Sbjct: 723 -TKPNAFHVCITSYK 736
Score = 45 (20.9 bits), Expect = 1.6e-30, Sum P(4) = 1.6e-30
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 116 SGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMD 166
SG+ E+ E+V+ NS D + + + E A E+ + +E + D
Sbjct: 465 SGNSEDEEEVEANSSDCELEET--RDVEEAAQEDSSSQSDSAEEHSEDEED 513
Score = 44 (20.5 bits), Expect = 2.0e-30, Sum P(4) = 2.0e-30
Identities = 26/136 (19%), Positives = 56/136 (41%)
Query: 120 EEIEDVDGNSDDPF-VADAIANEKELALSEEQRKKFRKVKEEDDANMDXXXXXXXXXXXX 178
E+ E+ N D+ D IA E++L + + ++ E + +M+
Sbjct: 399 EDDEEFTANEDEAEDEEDTIAAEEQLEGEVDHAMELSELAREGELSMEELLQQYAGAYAY 458
Query: 179 XXIS----KQKEIGSVDWTIEDSAVE-TRPLVDASKSLSNKKTDDGDMPGNNNEVALQNL 233
+ ++ V+ D +E TR + +A++ S+ ++D + + E ++
Sbjct: 459 DASAPGSGNSEDEEEVEANSSDCELEETRDVEEAAQEDSSSQSDSAEEHSEDEED--EHS 516
Query: 234 ETGVLESSVKERSLSN 249
E + SS E S S+
Sbjct: 517 EEEMSGSSQSEESESD 532
Score = 43 (20.2 bits), Expect = 2.5e-30, Sum P(4) = 2.5e-30
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 116 SGSVEE-IEDV-DGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMD 166
S S EE ED D +S++ + + E E SE+ + + + +E++D D
Sbjct: 501 SDSAEEHSEDEEDEHSEEEMSGSSQSEESESDESEDAQSQSQADEEQEDEGDD 553
Score = 40 (19.1 bits), Expect = 5.2e-30, Sum P(4) = 5.2e-30
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 148 EEQRKKFRKVKEEDDANM 165
EEQR+K + + E+ A +
Sbjct: 174 EEQRQKEERARREEQAKL 191
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 182 (69.1 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 51/127 (40%), Positives = 66/127 (51%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL K L+F Q + ++E Y + +G + RL
Sbjct: 331 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAY------------RGFKYLRL 378
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T++ +R L++ FNEP L+STRAG LG+NL SA+ VII D WNP DLQ
Sbjct: 379 DGTTKAEDRGMLLKTFNEP-GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQ 437
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 438 AQDRAHR 444
Score = 177 (67.4 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RR+ LTG+PLQN L E + +++F+ S
Sbjct: 130 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCS 189
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 190 TFEQWFNAPFAMTGEKVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVEAQLPEKVEY 246
Query: 837 VITVKLSPLQRRLYKRFLDLHG--FTNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S LQR LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 247 VIKCDMSALQRVLY-RHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 305
Score = 120 (47.3 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 32/93 (34%), Positives = 46/93 (49%)
Query: 562 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 621
++ LK +Q+ G+ ++ V + L ILA MGLGKT Q IA + M
Sbjct: 2 VNGVLKQYQIKGLEWL----------VSLYNNNLNGILADEMGLGKTIQTIALITYLMEH 51
Query: 622 VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELK 654
+ LI+ P++ L NW EF KW PS +K
Sbjct: 52 KRIN-GPFLIIVPLSTLSNWAYEFDKWAPSVVK 83
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 199 (75.1 bits), Expect = 2.1e-30, Sum P(3) = 2.1e-30
Identities = 51/132 (38%), Positives = 71/132 (53%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKM +L +L G + L+FSQ LD++E Y W+ ++ RL
Sbjct: 430 SGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCH-----------WRN-YNYCRL 477
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG+T +R + ++ FN N ++STRAG LGINL +A+ VII D WNP DLQ
Sbjct: 478 DGQTPHEDRNRQIQEFNMD-NSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQ 536
Query: 1079 AIYRAWRCMDKQ 1090
A+ RA R K+
Sbjct: 537 AMDRAHRIGQKK 548
Score = 173 (66.0 bits), Expect = 2.1e-30, Sum P(3) = 2.1e-30
Identities = 56/171 (32%), Positives = 84/171 (49%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ ++ L++ K R+ +TG+PLQNNL E + +++F+ SS +
Sbjct: 253 LVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQNNLHELWALLNFLLPDVFNSSED 312
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F F +TN+ D ++ + L+ LK F+ R V+K L PK I
Sbjct: 313 FDEWF--------NTNTCLGDDALITR----LHAVLKPFLLRRLKAEVEKRLKPKKEMKI 360
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
V LS +QR Y + L D+ N EK+R L + NHP
Sbjct: 361 FVGLSKMQRDWYTKVLLKDID-VVNGAGKVEKMRLQNIL--MQLRKCTNHP 408
Score = 108 (43.1 bits), Expect = 2.1e-30, Sum P(3) = 2.1e-30
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
+ G+ ILA MGLGKT Q I+ L N +++ P + L NW EF KW PS
Sbjct: 144 ENGINGILADEMGLGKTLQTISLLGYLKHFKNQA-GPHIVIVPKSTLQNWVNEFKKWCPS 202
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 178 (67.7 bits), Expect = 2.3e-30, Sum P(4) = 2.3e-30
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RRI LTG+PLQN L E + +++F+ S
Sbjct: 830 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCS 889
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 890 TFEQWFNAPFAMTGERVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVESQLPEKVEY 946
Query: 837 VITVKLSPLQRRLYKRFLDLHGF--TNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S LQ+ LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 947 VIKCDMSALQKILY-RHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ 1005
Score = 173 (66.0 bits), Expect = 2.3e-30, Sum P(4) = 2.3e-30
Identities = 49/127 (38%), Positives = 68/127 (53%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL + L+F Q + ++E Y + + L+ RL
Sbjct: 1031 SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAF------RNFLY------LRL 1078
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T+S +R L+++FNEP + L+STRAG LG+NL +A+ V+I D WNP DLQ
Sbjct: 1079 DGTTKSEDRAALLKKFNEP-GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQ 1137
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1138 AQDRAHR 1144
Score = 140 (54.3 bits), Expect = 2.3e-30, Sum P(4) = 2.3e-30
Identities = 56/221 (25%), Positives = 96/221 (43%)
Query: 483 DAELGEETKRKIAIEKERQERL----KSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGD 538
D++ EE + + + +E +E++ S +V +++ + D D G
Sbjct: 621 DSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGS 680
Query: 539 AITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCI 598
+ + + E+ E+ + I+ LK +Q+ G+ +M V + L I
Sbjct: 681 QSYYTVAHAISERVEKQSAL--LINGTLKHYQLQGLEWM----------VSLYNNNLNGI 728
Query: 599 LAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRV 658
LA MGLGKT Q IA + M L LI+ P++ L NW EF KW PS +K
Sbjct: 729 LADEMGLGKTIQTIALITYLMEHKRLN-GPYLIIVPLSTLSNWTYEFDKWAPSVVK---- 783
Query: 659 FMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHV 699
+ RR+ L+ + R+ G F + T + + KH+
Sbjct: 784 ISYKGTPAMRRS-LVPQLRS--GKFNVLLTTYEYIIKDKHI 821
Score = 67 (28.6 bits), Expect = 6.5e-23, Sum P(4) = 6.5e-23
Identities = 26/96 (27%), Positives = 43/96 (44%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDA 539
L +A + E+ +++ IE+ER+ R K Q S L ++ + S I+ L A
Sbjct: 405 LREARMTEKLEKQQKIEQERKRRQKH---QEYLNSILQHAKDFKEYHRSVAGKIQKLSKA 461
Query: 540 ITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIR 575
+ + N RE+ +E RI +L A G R
Sbjct: 462 VATWHANTEREQKKETERIEKERMRRLMAEDEEGYR 497
Score = 44 (20.5 bits), Expect = 2.3e-30, Sum P(4) = 2.3e-30
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 110 YRL-CKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKV 157
YRL +++ ++E+E++ G+ A K L L QR+ ++V
Sbjct: 330 YRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEV 378
Score = 38 (18.4 bits), Expect = 9.3e-30, Sum P(4) = 9.3e-30
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 131 DPFVADA--IANEKELALSEEQRKKFRKVKEEDDANMD 166
D +VA+ + E + A + +++KK R+ K++ + N +
Sbjct: 516 DEYVANLTNLVWEHKQAQAAKEKKKRRRKKKKAEENAE 553
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 178 (67.7 bits), Expect = 2.3e-30, Sum P(4) = 2.3e-30
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RRI LTG+PLQN L E + +++F+ S
Sbjct: 832 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCS 891
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 892 TFEQWFNAPFAMTGERVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVESQLPEKVEY 948
Query: 837 VITVKLSPLQRRLYKRFLDLHGF--TNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S LQ+ LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 949 VIKCDMSALQKILY-RHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ 1007
Score = 173 (66.0 bits), Expect = 2.3e-30, Sum P(4) = 2.3e-30
Identities = 49/127 (38%), Positives = 68/127 (53%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL + L+F Q + ++E Y + + L+ RL
Sbjct: 1033 SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAF------RNFLY------LRL 1080
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T+S +R L+++FNEP + L+STRAG LG+NL +A+ V+I D WNP DLQ
Sbjct: 1081 DGTTKSEDRAALLKKFNEP-GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQ 1139
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1140 AQDRAHR 1146
Score = 140 (54.3 bits), Expect = 2.3e-30, Sum P(4) = 2.3e-30
Identities = 56/221 (25%), Positives = 96/221 (43%)
Query: 483 DAELGEETKRKIAIEKERQERL----KSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGD 538
D++ EE + + + +E +E++ S +V +++ + D D G
Sbjct: 623 DSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGS 682
Query: 539 AITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCI 598
+ + + E+ E+ + I+ LK +Q+ G+ +M V + L I
Sbjct: 683 QSYYTVAHAISERVEKQSAL--LINGTLKHYQLQGLEWM----------VSLYNNNLNGI 730
Query: 599 LAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRV 658
LA MGLGKT Q IA + M L LI+ P++ L NW EF KW PS +K
Sbjct: 731 LADEMGLGKTIQTIALITYLMEHKRLN-GPYLIIVPLSTLSNWTYEFDKWAPSVVK---- 785
Query: 659 FMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHV 699
+ RR+ L+ + R+ G F + T + + KH+
Sbjct: 786 ISYKGTPAMRRS-LVPQLRS--GKFNVLLTTYEYIIKDKHI 823
Score = 44 (20.5 bits), Expect = 2.3e-30, Sum P(4) = 2.3e-30
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 110 YRL-CKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKV 157
YRL +++ ++E+E++ G+ A K L L QR+ ++V
Sbjct: 331 YRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEV 379
Score = 44 (20.5 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVT 522
L +A + E+ +++ IE+ER+ R K QV + +L T
Sbjct: 406 LREARMTEKLEKQQKIEQERKRRQKH-QVPGALMGRLPKQAT 446
Score = 37 (18.1 bits), Expect = 1.2e-29, Sum P(4) = 1.2e-29
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 131 DPFVADA--IANEKELALSEEQRKKFRKVKEEDDANMD 166
D +VA+ + E + A + +++KK R+ K++ + N +
Sbjct: 518 DEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAE 555
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 264 (98.0 bits), Expect = 2.4e-30, Sum P(3) = 2.4e-30
Identities = 113/401 (28%), Positives = 179/401 (44%)
Query: 598 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLR 657
ILA MGLGKT Q IAFL + + G L+V P + + NW +EF +W PS + L
Sbjct: 496 ILADEMGLGKTVQAIAFLAHLYVTGDSGPH--LVVVPASTMDNWIREFNQWCPS-MNILL 552
Query: 658 VFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPD 717
+ ++ + R ++L K + V + Y N + +DR++ R + L +
Sbjct: 553 YYGSQEERKHLRYDILNKV-VEFNVIVTTY----NCAISS-AEDRSLFRRL--KL----N 600
Query: 718 ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-FLGSS 776
V DE HM+KN A Q L + + R+ LTG+P+QNNL+E +++FV F S+
Sbjct: 601 FAVFDEGHMLKNMSAIRYQHLMTLNARSRLLLTGTPVQNNLLELMSLLNFVMPHMFSSST 660
Query: 777 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
E + F + + ST E +R + +K F+ R + V K LPPK
Sbjct: 661 SEIKRLFSSKAK------STDEQTIFEKERIAHAKQIMKPFILRRVKSEVLKQLPPKQDK 714
Query: 837 VITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDK 896
+ ++S Q +LY L+ + D + EK L ++ NHP + +
Sbjct: 715 IKFCQMSKKQEQLYSDLLNKLKKSID--ATEK-NSELCNVMMHLRKMANHPLLHRQYYTA 771
Query: 897 GYPSRXXXXXXXXXXNMDYNV-VIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKE 955
+ D N +I E M DF + + F + L +
Sbjct: 772 DRLRTMSKLMLKEPTHCDANPDLIFEDMEVMTDFELHRLCNEFTTLSQYK--LEKELI-- 827
Query: 956 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYL 996
LD SGK +L +L+ GD+ ++FSQ LD+IE +L
Sbjct: 828 LD-SGKFNILEKLLSDIKKKGDRVVLFSQFTMMLDIIEVFL 867
Score = 169 (64.5 bits), Expect = 2.4e-30, Sum P(3) = 2.4e-30
Identities = 52/130 (40%), Positives = 72/130 (55%)
Query: 956 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
LD SGK +L +L+ GD+ ++FSQ LD+IE +L Q + +
Sbjct: 828 LD-SGKFNILEKLLSDIKKKGDRVVLFSQFTMMLDIIEVFLRH-----HQHR-------Y 874
Query: 1016 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1075
RLDG+T+ SER L++ FN ++ + L+ST+AG LGINL SAN VI+ D NP
Sbjct: 875 VRLDGKTQISERIHLIDEFNTDMD--IFIFLLSTKAGGLGINLTSANIVILHDIDCNPYN 932
Query: 1076 DLQAIYRAWR 1085
D QA R R
Sbjct: 933 DKQAEDRCHR 942
Score = 43 (20.2 bits), Expect = 2.4e-30, Sum P(3) = 2.4e-30
Identities = 27/129 (20%), Positives = 54/129 (41%)
Query: 123 EDVDGNSDDPFVADAIANEKELALSEEQ-RKKFRKVKEEDDANMDXXXXXXXXXXXXXXI 181
E ++G + D ++++ + +LSE+ K+ VK+ D
Sbjct: 191 EGINGQTKKKKKIDRVSSDNDSSLSEDDWEKQEASVKKLQRHFPDLDKEELREVLQEHDW 250
Query: 182 SKQKEIGSVDWTIEDSAVETRPLVDASKS-LSNKK----TDDGDMPGNNNEVALQNLETG 236
S + + ++ ED ET L +A+K +SN K ++ D + A QN
Sbjct: 251 SFHEALEALKLFAED---ETDALQNAAKKEVSNGKEFSRSNKNDNKSSAKAKANQNSNKA 307
Query: 237 VLESSVKER 245
+ ++ VK++
Sbjct: 308 MAQNGVKKK 316
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 178 (67.7 bits), Expect = 2.5e-30, Sum P(4) = 2.5e-30
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RRI LTG+PLQN L E + +++F+ S
Sbjct: 848 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCS 907
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 908 TFEQWFNAPFAMTGERVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVESQLPEKVEY 964
Query: 837 VITVKLSPLQRRLYKRFLDLHGF--TNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S LQ+ LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 965 VIKCDMSALQKILY-RHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ 1023
Score = 173 (66.0 bits), Expect = 2.5e-30, Sum P(4) = 2.5e-30
Identities = 49/127 (38%), Positives = 68/127 (53%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL + L+F Q + ++E Y + + L+ RL
Sbjct: 1049 SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAF------RNFLY------LRL 1096
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T+S +R L+++FNEP + L+STRAG LG+NL +A+ V+I D WNP DLQ
Sbjct: 1097 DGTTKSEDRAALLKKFNEP-GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQ 1155
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1156 AQDRAHR 1162
Score = 140 (54.3 bits), Expect = 2.5e-30, Sum P(4) = 2.5e-30
Identities = 56/221 (25%), Positives = 96/221 (43%)
Query: 483 DAELGEETKRKIAIEKERQERL----KSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGD 538
D++ EE + + + +E +E++ S +V +++ + D D G
Sbjct: 639 DSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGS 698
Query: 539 AITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCI 598
+ + + E+ E+ + I+ LK +Q+ G+ +M V + L I
Sbjct: 699 QSYYTVAHAISERVEKQSAL--LINGTLKHYQLQGLEWM----------VSLYNNNLNGI 746
Query: 599 LAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRV 658
LA MGLGKT Q IA + M L LI+ P++ L NW EF KW PS +K
Sbjct: 747 LADEMGLGKTIQTIALITYLMEHKRLN-GPYLIIVPLSTLSNWTYEFDKWAPSVVK---- 801
Query: 659 FMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHV 699
+ RR+ L+ + R+ G F + T + + KH+
Sbjct: 802 ISYKGTPAMRRS-LVPQLRS--GKFNVLLTTYEYIIKDKHI 839
Score = 67 (28.6 bits), Expect = 7.2e-23, Sum P(4) = 7.2e-23
Identities = 26/96 (27%), Positives = 43/96 (44%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDA 539
L +A + E+ +++ IE+ER+ R K Q S L ++ + S I+ L A
Sbjct: 423 LREARMTEKLEKQQKIEQERKRRQKH---QEYLNSILQHAKDFKEYHRSVAGKIQKLSKA 479
Query: 540 ITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIR 575
+ + N RE+ +E RI +L A G R
Sbjct: 480 VATWHANTEREQKKETERIEKERMRRLMAEDEEGYR 515
Score = 44 (20.5 bits), Expect = 2.5e-30, Sum P(4) = 2.5e-30
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 110 YRL-CKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKV 157
YRL +++ ++E+E++ G+ A K L L QR+ ++V
Sbjct: 348 YRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEV 396
Score = 37 (18.1 bits), Expect = 1.3e-29, Sum P(4) = 1.3e-29
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 131 DPFVADA--IANEKELALSEEQRKKFRKVKEEDDANMD 166
D +VA+ + E + A + +++KK R+ K++ + N +
Sbjct: 534 DEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAE 571
>WB|WBGene00002637 [details] [associations]
symbol:let-418 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0048557 "embryonic digestive tract
morphogenesis" evidence=IGI] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0016581 "NuRD complex"
evidence=ISS] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 227 (85.0 bits), Expect = 2.6e-30, Sum P(3) = 2.6e-30
Identities = 93/348 (26%), Positives = 155/348 (44%)
Query: 548 VREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGK 607
+R+K E + KL +Q+ G+ W +R S G ILA MGLGK
Sbjct: 584 IRKKYEVQPDYVTETGGKLHPYQLEGLN--W------LRHCWSN--GTDAILADEMGLGK 633
Query: 608 TFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLED---V 664
T Q + FLY+ M+ + LI P++ + NW++E +W P + + L D V
Sbjct: 634 TVQSLTFLYSLMKEGHCK-GPFLIAAPLSTIINWEREAEQWCP-DFYVVTYVGLRDARVV 691
Query: 665 SRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHV-----KDRNMAREICHALQDGPDIL 719
R+ + + + G N+ F HV + NM + I +++ G L
Sbjct: 692 LREHEFSFV-EGAVRSGPKASKMKTTENMKF--HVLLTSYETINMDKTILSSIEWGA--L 746
Query: 720 VCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 779
V DEAH +KN ++ + L + R+ LTG+PLQNNL E + +++F+ + F
Sbjct: 747 VVDEAHRLKNNQSLFFKNLNEYTIHYRVLLTGTPLQNNLEELFHLLNFLSKERFNQLEAF 806
Query: 780 RNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVIT 839
F N S++ +I ++ H L ++R+ +V+ +P K+ ++
Sbjct: 807 TAEF----------NEISKEDQI--EKLHNLLGP--HMLRRLKADVLT-GMPSKSELIVR 851
Query: 840 VKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
V+LS +Q++ YK L F V N + S L + NHP
Sbjct: 852 VELSAMQKKWYKNILT-RNFDALNVKNGGTQMSLMNVLMELKKCCNHP 898
Score = 180 (68.4 bits), Expect = 2.6e-30, Sum P(3) = 2.6e-30
Identities = 50/131 (38%), Positives = 68/131 (51%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK VLL +L + G + L+FSQ LD++E +G + R+
Sbjct: 925 SGKFVLLQKMLRKLKDGGHRVLIFSQMTRMLDIMEDLCEY------------EGYRYERI 972
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG RQ ++R+N P ++ L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 973 DGSIMGQMRQDAIDRYNAPGAQQF-IFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1031
Query: 1079 AIYRAWRCMDK 1089
A RA R K
Sbjct: 1032 AFSRAHRLGQK 1042
Score = 80 (33.2 bits), Expect = 2.6e-30, Sum P(3) = 2.6e-30
Identities = 21/73 (28%), Positives = 32/73 (43%)
Query: 360 KCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQAS 419
K LEK ++ D YC C + +L+ C +C + T C+ N+ E E S
Sbjct: 244 KAKLEKGEEAENND----YCEECKQDGELLLCDTCPRAYHTVCIDENMEEP---PEGDWS 296
Query: 420 CWQCCCCSPSLLK 432
C C P ++K
Sbjct: 297 CAHCIEHGPEVVK 309
Score = 62 (26.9 bits), Expect = 1.9e-28, Sum P(3) = 1.9e-28
Identities = 30/127 (23%), Positives = 48/127 (37%)
Query: 304 KLEDHSVSPEN--INDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKC 361
KLE + N + D L + Y T C + +E P + C +
Sbjct: 246 KLEKGEEAENNDYCEECKQDGELLLCDTCPRAYHTVCIDENMEEPPEGDWSCAHCIEHGP 305
Query: 362 LLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCW 421
+ K+ K D E +C C + +L+ C SC F C+ ++E + E SC
Sbjct: 306 EVVKEEPAKQND--E-FCKICKETENLLLCDSCVCSFHAYCIDPPLTE--VPKEETWSCP 360
Query: 422 QCCCCSP 428
+C P
Sbjct: 361 RCETVKP 367
Score = 45 (20.9 bits), Expect = 1.9e-15, Sum P(4) = 1.9e-15
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 998 KLPRPGKQGKLWKKGKDWYRLDG 1020
K+ R GK+ ++W + D++ L G
Sbjct: 1517 KVARNGKEYEIWYRRHDYWLLAG 1539
Score = 39 (18.8 bits), Expect = 7.6e-11, Sum P(3) = 7.6e-11
Identities = 18/70 (25%), Positives = 28/70 (40%)
Query: 496 IEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEA 555
+ KER +L++ +F+ SK L L + D +TG + K E
Sbjct: 795 LSKERFNQLEAFTAEFNEISKEDQIEKLHNLLGPHMLRRLKADVLTG-----MPSKSELI 849
Query: 556 VRIPSSISAK 565
VR+ S K
Sbjct: 850 VRVELSAMQK 859
Score = 37 (18.1 bits), Expect = 1.9e-15, Sum P(4) = 1.9e-15
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 933 KNDDGFFQKDWWNDLLHEHTYKE 955
K D+ D+W LL H Y++
Sbjct: 1190 KEDEKEPDPDYWEKLLKHH-YEQ 1211
>UNIPROTKB|G5EBZ4 [details] [associations]
symbol:let-418 "Protein let-418" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 227 (85.0 bits), Expect = 2.6e-30, Sum P(3) = 2.6e-30
Identities = 93/348 (26%), Positives = 155/348 (44%)
Query: 548 VREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGK 607
+R+K E + KL +Q+ G+ W +R S G ILA MGLGK
Sbjct: 584 IRKKYEVQPDYVTETGGKLHPYQLEGLN--W------LRHCWSN--GTDAILADEMGLGK 633
Query: 608 TFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLED---V 664
T Q + FLY+ M+ + LI P++ + NW++E +W P + + L D V
Sbjct: 634 TVQSLTFLYSLMKEGHCK-GPFLIAAPLSTIINWEREAEQWCP-DFYVVTYVGLRDARVV 691
Query: 665 SRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHV-----KDRNMAREICHALQDGPDIL 719
R+ + + + G N+ F HV + NM + I +++ G L
Sbjct: 692 LREHEFSFV-EGAVRSGPKASKMKTTENMKF--HVLLTSYETINMDKTILSSIEWGA--L 746
Query: 720 VCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 779
V DEAH +KN ++ + L + R+ LTG+PLQNNL E + +++F+ + F
Sbjct: 747 VVDEAHRLKNNQSLFFKNLNEYTIHYRVLLTGTPLQNNLEELFHLLNFLSKERFNQLEAF 806
Query: 780 RNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVIT 839
F N S++ +I ++ H L ++R+ +V+ +P K+ ++
Sbjct: 807 TAEF----------NEISKEDQI--EKLHNLLGP--HMLRRLKADVLT-GMPSKSELIVR 851
Query: 840 VKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
V+LS +Q++ YK L F V N + S L + NHP
Sbjct: 852 VELSAMQKKWYKNILT-RNFDALNVKNGGTQMSLMNVLMELKKCCNHP 898
Score = 180 (68.4 bits), Expect = 2.6e-30, Sum P(3) = 2.6e-30
Identities = 50/131 (38%), Positives = 68/131 (51%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK VLL +L + G + L+FSQ LD++E +G + R+
Sbjct: 925 SGKFVLLQKMLRKLKDGGHRVLIFSQMTRMLDIMEDLCEY------------EGYRYERI 972
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG RQ ++R+N P ++ L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 973 DGSIMGQMRQDAIDRYNAPGAQQF-IFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1031
Query: 1079 AIYRAWRCMDK 1089
A RA R K
Sbjct: 1032 AFSRAHRLGQK 1042
Score = 80 (33.2 bits), Expect = 2.6e-30, Sum P(3) = 2.6e-30
Identities = 21/73 (28%), Positives = 32/73 (43%)
Query: 360 KCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQAS 419
K LEK ++ D YC C + +L+ C +C + T C+ N+ E E S
Sbjct: 244 KAKLEKGEEAENND----YCEECKQDGELLLCDTCPRAYHTVCIDENMEEP---PEGDWS 296
Query: 420 CWQCCCCSPSLLK 432
C C P ++K
Sbjct: 297 CAHCIEHGPEVVK 309
Score = 62 (26.9 bits), Expect = 1.9e-28, Sum P(3) = 1.9e-28
Identities = 30/127 (23%), Positives = 48/127 (37%)
Query: 304 KLEDHSVSPEN--INDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKC 361
KLE + N + D L + Y T C + +E P + C +
Sbjct: 246 KLEKGEEAENNDYCEECKQDGELLLCDTCPRAYHTVCIDENMEEPPEGDWSCAHCIEHGP 305
Query: 362 LLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCW 421
+ K+ K D E +C C + +L+ C SC F C+ ++E + E SC
Sbjct: 306 EVVKEEPAKQND--E-FCKICKETENLLLCDSCVCSFHAYCIDPPLTE--VPKEETWSCP 360
Query: 422 QCCCCSP 428
+C P
Sbjct: 361 RCETVKP 367
Score = 45 (20.9 bits), Expect = 1.9e-15, Sum P(4) = 1.9e-15
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 998 KLPRPGKQGKLWKKGKDWYRLDG 1020
K+ R GK+ ++W + D++ L G
Sbjct: 1517 KVARNGKEYEIWYRRHDYWLLAG 1539
Score = 39 (18.8 bits), Expect = 7.6e-11, Sum P(3) = 7.6e-11
Identities = 18/70 (25%), Positives = 28/70 (40%)
Query: 496 IEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEA 555
+ KER +L++ +F+ SK L L + D +TG + K E
Sbjct: 795 LSKERFNQLEAFTAEFNEISKEDQIEKLHNLLGPHMLRRLKADVLTG-----MPSKSELI 849
Query: 556 VRIPSSISAK 565
VR+ S K
Sbjct: 850 VRVELSAMQK 859
Score = 37 (18.1 bits), Expect = 1.9e-15, Sum P(4) = 1.9e-15
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 933 KNDDGFFQKDWWNDLLHEHTYKE 955
K D+ D+W LL H Y++
Sbjct: 1190 KEDEKEPDPDYWEKLLKHH-YEQ 1211
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 178 (67.7 bits), Expect = 4.6e-30, Sum P(4) = 4.6e-30
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RRI LTG+PLQN L E + +++F+ S
Sbjct: 832 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCS 891
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 892 TFEQWFNAPFAMTGERVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVESQLPEKVEY 948
Query: 837 VITVKLSPLQRRLYKRFLDLHGF--TNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S LQ+ LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 949 VIKCDMSALQKILY-RHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ 1007
Score = 173 (66.0 bits), Expect = 4.6e-30, Sum P(4) = 4.6e-30
Identities = 49/127 (38%), Positives = 68/127 (53%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL + L+F Q + ++E Y + + L+ RL
Sbjct: 1033 SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAF------RNFLY------LRL 1080
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T+S +R L+++FNEP + L+STRAG LG+NL +A+ V+I D WNP DLQ
Sbjct: 1081 DGTTKSEDRAALLKKFNEP-GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQ 1139
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1140 AQDRAHR 1146
Score = 137 (53.3 bits), Expect = 4.6e-30, Sum P(4) = 4.6e-30
Identities = 55/221 (24%), Positives = 96/221 (43%)
Query: 483 DAELGEETKRKIAIEKERQERL----KSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGD 538
D++ EE + + + ++ +E++ S +V +++ + D D G
Sbjct: 623 DSDYEEEDEEEESSRQDTEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGS 682
Query: 539 AITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCI 598
+ + + E+ E+ + I+ LK +Q+ G+ +M V + L I
Sbjct: 683 QSYYTVAHAISERVEKQSAL--LINGTLKHYQLQGLEWM----------VSLYNNNLNGI 730
Query: 599 LAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRV 658
LA MGLGKT Q IA + M L LI+ P++ L NW EF KW PS +K
Sbjct: 731 LADEMGLGKTIQTIALITYLMEHKRLN-GPYLIIVPLSTLSNWTYEFDKWAPSVVK---- 785
Query: 659 FMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHV 699
+ RR+ L+ + R+ G F + T + + KH+
Sbjct: 786 ISYKGTPAMRRS-LVPQLRS--GKFNVLLTTYEYIIKDKHI 823
Score = 67 (28.6 bits), Expect = 6.5e-23, Sum P(4) = 6.5e-23
Identities = 26/96 (27%), Positives = 43/96 (44%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDA 539
L +A + E+ +++ IE+ER+ R K Q S L ++ + S I+ L A
Sbjct: 407 LREARMTEKLEKQQKIEQERKRRQKH---QEYLNSILQHAKDFKEYHRSVAGKIQKLSKA 463
Query: 540 ITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIR 575
+ + N RE+ +E RI +L A G R
Sbjct: 464 VATWHANTEREQKKETERIEKERMRRLMAEDEEGYR 499
Score = 44 (20.5 bits), Expect = 4.6e-30, Sum P(4) = 4.6e-30
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 110 YRL-CKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKV 157
YRL +++ ++E+E++ G+ A K L L QR+ ++V
Sbjct: 332 YRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEV 380
>TAIR|locus:2160811 [details] [associations]
symbol:CHR24 "chromatin remodeling 24" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0046686 "response to cadmium ion" evidence=IEP] [GO:0006270
"DNA replication initiation" evidence=RCA] [GO:0006275 "regulation
of DNA replication" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048439 "flower morphogenesis" evidence=RCA] [GO:0048519
"negative regulation of biological process" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046686 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AF462829 EMBL:AY142010 IPI:IPI00526353 RefSeq:NP_201200.2
UniGene:At.28262 ProteinModelPortal:Q8W103 PaxDb:Q8W103
PRIDE:Q8W103 EnsemblPlants:AT5G63950.1 GeneID:836516
KEGG:ath:AT5G63950 TAIR:At5g63950 HOGENOM:HOG000029838
InParanoid:Q8W103 OMA:VIVYRLM PhylomeDB:Q8W103
ProtClustDB:CLSN2690259 Genevestigator:Q8W103 Uniprot:Q8W103
Length = 1090
Score = 264 (98.0 bits), Expect = 4.6e-30, Sum P(2) = 4.6e-30
Identities = 89/310 (28%), Positives = 147/310 (47%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G G IL MGLGKT Q+ +FL S L ++ AL+V P +L +W +E S+
Sbjct: 394 QGKGGILGDDMGLGKTMQICSFLAGLFHS-KL-IKRALVVAPKTLLPHWMKELATVGLSQ 451
Query: 653 LKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHAL 712
+ R + ++ R +L + KG + L Y RN + D +
Sbjct: 452 MT--REYYGTS-TKAREYDLHHILQGKG-ILLTTYDIVRNNTKALQGDDHYTDEDD---- 503
Query: 713 QDGP--DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 770
+DG D ++ DE H+IKN ++L ++ RI ++G+P+QNNL E + + +F
Sbjct: 504 EDGNKWDYMILDEGHLIKNPNTQRAKSLLEIPSSHRIIISGTPIQNNLKELWALFNFSCP 563
Query: 771 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGF-VQRMDMNVVKKD 829
G LG + F+ +++ I G N+T + +I + + L E ++ F ++R+ V D
Sbjct: 564 GLLGDKNWFKQNYEHYILRGTDKNATDREQRIGSTVAKNLREHIQPFFLRRLKSEVFGDD 623
Query: 830 -----LPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIW 884
L K V+ ++L+ QR+LY+ FL N + S A L +I
Sbjct: 624 GATSKLSKKDEIVVWLRLTACQRQLYEAFL------NSEIVLSAFDGSPLAALTILKKIC 677
Query: 885 NHPGILQLTK 894
+HP L LTK
Sbjct: 678 DHP--LLLTK 685
Score = 162 (62.1 bits), Expect = 4.6e-30, Sum P(2) = 4.6e-30
Identities = 43/127 (33%), Positives = 68/127 (53%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
S K+ ++ +L G + L+FSQ+ L+LI Q L G + R+
Sbjct: 731 SCKLSFIMSLLENLIPEGHRVLIFSQTRKMLNLI------------QDSLTSNGYSFLRI 778
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T++ +R K VE F E L++++ G LG+ L A+RVI+VD +WNP+ D Q
Sbjct: 779 DGTTKAPDRLKTVEEFQE--GHVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQ 836
Query: 1079 AIYRAWR 1085
++ RA+R
Sbjct: 837 SVDRAYR 843
Score = 106 (42.4 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 558 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 617
+P I+ L HQ G+ ++W S+ +G G IL MGLGKT Q+ +FL
Sbjct: 369 LPGKIATMLYPHQREGLNWLW-----SLHT-----QGKGGILGDDMGLGKTMQICSFLAG 418
Query: 618 AMRSVNLGLRTALIVTPVNVLHNWKQE 644
S L ++ AL+V P +L +W +E
Sbjct: 419 LFHS-KL-IKRALVVAPKTLLPHWMKE 443
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 178 (67.7 bits), Expect = 4.9e-30, Sum P(4) = 4.9e-30
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RRI LTG+PLQN L E + +++F+ S
Sbjct: 832 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCS 891
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 892 TFEQWFNAPFAMTGERVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVESQLPEKVEY 948
Query: 837 VITVKLSPLQRRLYKRFLDLHGF--TNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S LQ+ LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 949 VIKCDMSALQKILY-RHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ 1007
Score = 173 (66.0 bits), Expect = 4.9e-30, Sum P(4) = 4.9e-30
Identities = 49/127 (38%), Positives = 68/127 (53%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL + L+F Q + ++E Y + + L+ RL
Sbjct: 1033 SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAF------RNFLY------LRL 1080
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T+S +R L+++FNEP + L+STRAG LG+NL +A+ V+I D WNP DLQ
Sbjct: 1081 DGTTKSEDRAALLKKFNEP-GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQ 1139
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1140 AQDRAHR 1146
Score = 137 (53.3 bits), Expect = 4.9e-30, Sum P(4) = 4.9e-30
Identities = 55/221 (24%), Positives = 96/221 (43%)
Query: 483 DAELGEETKRKIAIEKERQERL----KSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGD 538
D++ EE + + + ++ +E++ S +V +++ + D D G
Sbjct: 623 DSDYEEEDEEEESSRQDTEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGS 682
Query: 539 AITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCI 598
+ + + E+ E+ + I+ LK +Q+ G+ +M V + L I
Sbjct: 683 QSYYTVAHAISERVEKQSAL--LINGTLKHYQLQGLEWM----------VSLYNNNLNGI 730
Query: 599 LAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRV 658
LA MGLGKT Q IA + M L LI+ P++ L NW EF KW PS +K
Sbjct: 731 LADEMGLGKTIQTIALITYLMEHKRLN-GPYLIIVPLSTLSNWTYEFDKWAPSVVK---- 785
Query: 659 FMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHV 699
+ RR+ L+ + R+ G F + T + + KH+
Sbjct: 786 ISYKGTPAMRRS-LVPQLRS--GKFNVLLTTYEYIIKDKHI 823
Score = 67 (28.6 bits), Expect = 6.9e-23, Sum P(4) = 6.9e-23
Identities = 26/96 (27%), Positives = 43/96 (44%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDA 539
L +A + E+ +++ IE+ER+ R K Q S L ++ + S I+ L A
Sbjct: 407 LREARMTEKLEKQQKIEQERKRRQKH---QEYLNSILQHAKDFKEYHRSVAGKIQKLSKA 463
Query: 540 ITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIR 575
+ + N RE+ +E RI +L A G R
Sbjct: 464 VATWHANTEREQKKETERIEKERMRRLMAEDEEGYR 499
Score = 44 (20.5 bits), Expect = 4.9e-30, Sum P(4) = 4.9e-30
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 110 YRL-CKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKV 157
YRL +++ ++E+E++ G+ A K L L QR+ ++V
Sbjct: 332 YRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEV 380
>WB|WBGene00000482 [details] [associations]
symbol:chd-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=TAS]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0046580 "negative regulation of Ras protein
signal transduction" evidence=IMP] [GO:0001709 "cell fate
determination" evidence=IMP] [GO:0000118 "histone deacetylase
complex" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=TAS] [GO:0003678 "DNA helicase activity" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003682 GO:GO:0006338
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0001709 GO:GO:0046580 GO:GO:0008026 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0000118 GeneTree:ENSGT00560000076896
EMBL:AF308444 EMBL:Z67884 EMBL:Z67881 PIR:T20160 RefSeq:NP_510140.1
UniGene:Cel.16950 ProteinModelPortal:Q22516 SMR:Q22516
STRING:Q22516 PaxDb:Q22516 EnsemblMetazoa:T14G8.1 GeneID:181421
KEGG:cel:CELE_T14G8.1 UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1
HOGENOM:HOG000231124 InParanoid:Q22516 OMA:INIIMEL NextBio:913870
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
Uniprot:Q22516
Length = 1787
Score = 229 (85.7 bits), Expect = 5.0e-30, Sum P(4) = 5.0e-30
Identities = 88/302 (29%), Positives = 138/302 (45%)
Query: 594 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 653
G ILA MGLGKT Q + FLYT M+ + LI P++ + NW++E W P
Sbjct: 634 GTDAILADEMGLGKTVQSLTFLYTLMKEGHTK-GPFLIAAPLSTIINWEREAELWCPDFY 692
Query: 654 KPLRVFMLEDVSRDRRAEL-LAKWRAKGGVFLIGYTAFRNLSFGKHV-----KDRNMARE 707
V E R E +GG + NL F HV + NM +
Sbjct: 693 VVTYVGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLENLKF--HVLLTSYECINMDKA 750
Query: 708 ICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDF 767
I ++ LV DEAH +KN ++ + L++ Q R+ LTG+PLQNNL E + +++F
Sbjct: 751 ILSSIDWAA--LVVDEAHRLKNNQSTFFKNLREYNIQYRVLLTGTPLQNNLEELFHLLNF 808
Query: 768 VREGFLGSSHEFRNRFQNPIEN--GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 825
+ +RF N +E+ + + + ED +I ++ H L ++R+ +V
Sbjct: 809 LAP----------DRF-NQLESFTAEFSEISKED-QI--EKLHNLLGP--HMLRRLKADV 852
Query: 826 VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWN 885
+ +P K ++ V+LS +Q++ YK L F V N + S L + N
Sbjct: 853 LT-GMPSKQELIVRVELSAMQKKYYKNILT-RNFDALNVKNGGTQMSLINIIMELKKCCN 910
Query: 886 HP 887
HP
Sbjct: 911 HP 912
Score = 192 (72.6 bits), Expect = 5.0e-30, Sum P(4) = 5.0e-30
Identities = 50/131 (38%), Positives = 70/131 (53%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
+GK VLL +L + G + L+FSQ LD++E + +G + R+
Sbjct: 939 AGKFVLLQKMLRKLKDGGHRVLIFSQMTMMLDILEDFCDV------------EGYKYERI 986
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG +RQ ++R+N P K+ L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 987 DGSITGQQRQDAIDRYNAPGAKQF-VFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1045
Query: 1079 AIYRAWRCMDK 1089
A RA R K
Sbjct: 1046 AFSRAHRLGQK 1056
Score = 63 (27.2 bits), Expect = 5.0e-30, Sum P(4) = 5.0e-30
Identities = 28/126 (22%), Positives = 51/126 (40%)
Query: 306 EDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEK 365
E+H EN D L + Y AC + +E P + C C+
Sbjct: 262 ENHQ---ENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWS---CPHCEEHGPD 315
Query: 366 KMHVKD--ADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 423
+ V++ A + YC C +S+++ C +C + + C+ ++E E + SC +C
Sbjct: 316 VLIVEEEPAKANMDYCRICKETSNILLCDTCPSSYHAYCIDPPLTEI---PEGEWSCPRC 372
Query: 424 CCCSPS 429
P+
Sbjct: 373 IIPEPA 378
Score = 48 (22.0 bits), Expect = 5.0e-30, Sum P(4) = 5.0e-30
Identities = 24/88 (27%), Positives = 45/88 (51%)
Query: 70 YLASTPQQAAAMGLKFPGVD-EVTDFSSNCPNMWKFRSIITYRLCKVS-GS-VEEIEDVD 126
Y +++ + +AA+GL VD E +F S N+ F S++ + KV+ G+ V ++ +
Sbjct: 80 YKSTSAEISAAIGLTDVDVDYEQEEFQS-ITNLKNFSSLVKPYILKVNPGTNVTKMYPLF 138
Query: 127 GNSDDPFVADAIANEKELALSEEQRKKF 154
F A+ K ++ ++QR KF
Sbjct: 139 QVKYKEFQDHMTAHGK--SIQKQQRAKF 164
Score = 41 (19.5 bits), Expect = 1.1e-14, Sum P(4) = 1.1e-14
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 998 KLPRPGKQGKLWKKGKDWYRL 1018
K+ R GK+ ++W + D++ L
Sbjct: 1504 KVARNGKEYEIWHRRHDFWLL 1524
Score = 41 (19.5 bits), Expect = 1.8e-08, Sum P(4) = 1.8e-08
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 710 HALQDGPDILVCDE 723
H + GPD+L+ +E
Sbjct: 308 HCEEHGPDVLIVEE 321
Score = 39 (18.8 bits), Expect = 1.2e-10, Sum P(4) = 1.2e-10
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 924 RNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELD 957
R +N K+ + K W +L +EH E D
Sbjct: 505 RIINHLSYAKSQQDYLVK--WKELSYEHATWERD 536
>UNIPROTKB|Q22516 [details] [associations]
symbol:chd-3 "Chromodomain-helicase-DNA-binding protein 3
homolog" species:6239 "Caenorhabditis elegans" [GO:0032508 "DNA
duplex unwinding" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003682 GO:GO:0006338 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0001709 GO:GO:0046580
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598 GO:GO:0000118
GeneTree:ENSGT00560000076896 EMBL:AF308444 EMBL:Z67884 EMBL:Z67881
PIR:T20160 RefSeq:NP_510140.1 UniGene:Cel.16950
ProteinModelPortal:Q22516 SMR:Q22516 STRING:Q22516 PaxDb:Q22516
EnsemblMetazoa:T14G8.1 GeneID:181421 KEGG:cel:CELE_T14G8.1
UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1 HOGENOM:HOG000231124
InParanoid:Q22516 OMA:INIIMEL NextBio:913870 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 Uniprot:Q22516
Length = 1787
Score = 229 (85.7 bits), Expect = 5.0e-30, Sum P(4) = 5.0e-30
Identities = 88/302 (29%), Positives = 138/302 (45%)
Query: 594 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 653
G ILA MGLGKT Q + FLYT M+ + LI P++ + NW++E W P
Sbjct: 634 GTDAILADEMGLGKTVQSLTFLYTLMKEGHTK-GPFLIAAPLSTIINWEREAELWCPDFY 692
Query: 654 KPLRVFMLEDVSRDRRAEL-LAKWRAKGGVFLIGYTAFRNLSFGKHV-----KDRNMARE 707
V E R E +GG + NL F HV + NM +
Sbjct: 693 VVTYVGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLENLKF--HVLLTSYECINMDKA 750
Query: 708 ICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDF 767
I ++ LV DEAH +KN ++ + L++ Q R+ LTG+PLQNNL E + +++F
Sbjct: 751 ILSSIDWAA--LVVDEAHRLKNNQSTFFKNLREYNIQYRVLLTGTPLQNNLEELFHLLNF 808
Query: 768 VREGFLGSSHEFRNRFQNPIEN--GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 825
+ +RF N +E+ + + + ED +I ++ H L ++R+ +V
Sbjct: 809 LAP----------DRF-NQLESFTAEFSEISKED-QI--EKLHNLLGP--HMLRRLKADV 852
Query: 826 VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWN 885
+ +P K ++ V+LS +Q++ YK L F V N + S L + N
Sbjct: 853 LT-GMPSKQELIVRVELSAMQKKYYKNILT-RNFDALNVKNGGTQMSLINIIMELKKCCN 910
Query: 886 HP 887
HP
Sbjct: 911 HP 912
Score = 192 (72.6 bits), Expect = 5.0e-30, Sum P(4) = 5.0e-30
Identities = 50/131 (38%), Positives = 70/131 (53%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
+GK VLL +L + G + L+FSQ LD++E + +G + R+
Sbjct: 939 AGKFVLLQKMLRKLKDGGHRVLIFSQMTMMLDILEDFCDV------------EGYKYERI 986
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG +RQ ++R+N P K+ L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 987 DGSITGQQRQDAIDRYNAPGAKQF-VFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1045
Query: 1079 AIYRAWRCMDK 1089
A RA R K
Sbjct: 1046 AFSRAHRLGQK 1056
Score = 63 (27.2 bits), Expect = 5.0e-30, Sum P(4) = 5.0e-30
Identities = 28/126 (22%), Positives = 51/126 (40%)
Query: 306 EDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEK 365
E+H EN D L + Y AC + +E P + C C+
Sbjct: 262 ENHQ---ENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWS---CPHCEEHGPD 315
Query: 366 KMHVKD--ADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 423
+ V++ A + YC C +S+++ C +C + + C+ ++E E + SC +C
Sbjct: 316 VLIVEEEPAKANMDYCRICKETSNILLCDTCPSSYHAYCIDPPLTEI---PEGEWSCPRC 372
Query: 424 CCCSPS 429
P+
Sbjct: 373 IIPEPA 378
Score = 48 (22.0 bits), Expect = 5.0e-30, Sum P(4) = 5.0e-30
Identities = 24/88 (27%), Positives = 45/88 (51%)
Query: 70 YLASTPQQAAAMGLKFPGVD-EVTDFSSNCPNMWKFRSIITYRLCKVS-GS-VEEIEDVD 126
Y +++ + +AA+GL VD E +F S N+ F S++ + KV+ G+ V ++ +
Sbjct: 80 YKSTSAEISAAIGLTDVDVDYEQEEFQS-ITNLKNFSSLVKPYILKVNPGTNVTKMYPLF 138
Query: 127 GNSDDPFVADAIANEKELALSEEQRKKF 154
F A+ K ++ ++QR KF
Sbjct: 139 QVKYKEFQDHMTAHGK--SIQKQQRAKF 164
Score = 41 (19.5 bits), Expect = 1.1e-14, Sum P(4) = 1.1e-14
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 998 KLPRPGKQGKLWKKGKDWYRL 1018
K+ R GK+ ++W + D++ L
Sbjct: 1504 KVARNGKEYEIWHRRHDFWLL 1524
Score = 41 (19.5 bits), Expect = 1.8e-08, Sum P(4) = 1.8e-08
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 710 HALQDGPDILVCDE 723
H + GPD+L+ +E
Sbjct: 308 HCEEHGPDVLIVEE 321
Score = 39 (18.8 bits), Expect = 1.2e-10, Sum P(4) = 1.2e-10
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 924 RNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELD 957
R +N K+ + K W +L +EH E D
Sbjct: 505 RIINHLSYAKSQQDYLVK--WKELSYEHATWERD 536
>SGD|S000000017 [details] [associations]
symbol:FUN30 "Snf2p family member with ATP-dependent
chromatin remodeling activity" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0070870
"heterochromatin maintenance involved in chromatin silencing"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=IMP] [GO:0031934 "mating-type region
heterochromatin" evidence=IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IMP] [GO:0006348 "chromatin silencing
at telomere" evidence=IMP] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0070869 "heterochromatin assembly
involved in chromatin silencing" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SGD:S000000017 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0000775 EMBL:L05146 EMBL:BK006935 GO:GO:0003677 GO:GO:0003682
GO:GO:0030466 GO:GO:0000183 GO:GO:0006348 GO:GO:0004386
GO:GO:0031934 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0070869 GO:GO:0000729
GO:GO:0008094 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
PIR:S22266 RefSeq:NP_009383.1 ProteinModelPortal:P31380 SMR:P31380
DIP:DIP-2541N IntAct:P31380 MINT:MINT-425278 STRING:P31380
PaxDb:P31380 PeptideAtlas:P31380 EnsemblFungi:YAL019W GeneID:851214
KEGG:sce:YAL019W CYGD:YAL019w GeneTree:ENSGT00630000089890
OMA:KIEPYYG NextBio:968097 Genevestigator:P31380 GermOnline:YAL019W
GO:GO:0070870 Uniprot:P31380
Length = 1131
Score = 259 (96.2 bits), Expect = 5.4e-30, Sum P(3) = 5.4e-30
Identities = 76/269 (28%), Positives = 135/269 (50%)
Query: 595 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS-EL 653
+ CILA MGLGKT QVI+F + ++ +N L+V P + L NW +EF K+ P+ ++
Sbjct: 591 MSCILADDMGLGKTCQVISF-FAYLKQINEP-GPHLVVVPSSTLENWLREFQKFAPALKI 648
Query: 654 KPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYT-AFRNLSFGKHVKDRNMAREICHAL 712
+P + E R+ ++L + K V + Y A N +K+RN
Sbjct: 649 EPYYGSLQE---REELRDILERNAGKYDVIVTTYNLAAGNKYDVSFLKNRNF-------- 697
Query: 713 QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGF 772
+++V DE HM+KN+ ++ L +++ R+ LTG+PLQNNL E +++F+
Sbjct: 698 ----NVVVYDEGHMLKNSTSERFAKLMKIRANFRLLLTGTPLQNNLKELMSLLEFIMPNL 753
Query: 773 LGSSHE-----FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVK 827
S E F+ R + +N H +++ I ++ +K F+ R + V
Sbjct: 754 FISKKESFDAIFKQRAKTTDDNKNHNPLLAQEA-ITRAKT-----MMKPFILRRRKDQVL 807
Query: 828 KDLPPKTVFVITVKLSPLQRRLYKRFLDL 856
K LPPK + +L+ +Q+++Y + + +
Sbjct: 808 KHLPPKHTHIQYCELNAIQKKIYDKEIQI 836
Score = 172 (65.6 bits), Expect = 5.4e-30, Sum P(3) = 5.4e-30
Identities = 51/128 (39%), Positives = 73/128 (57%)
Query: 959 SGKMVLLLDIL-TMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYR 1017
SGK+ L +L T+ + +K L+FS LD++E LS L +K + R
Sbjct: 948 SGKIDALKKLLKTIIVDKQEKVLIFSLFTQVLDILEMVLSTLD--------YK----FLR 995
Query: 1018 LDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDL 1077
LDG T+ ++RQ L+++F E +K + ++ST+AG GINL AN VII D S+NP D
Sbjct: 996 LDGSTQVNDRQLLIDKFYE--DKDIPIFILSTKAGGFGINLVCANNVIIFDQSFNPHDDR 1053
Query: 1078 QAIYRAWR 1085
QA RA R
Sbjct: 1054 QAADRAHR 1061
Score = 44 (20.5 bits), Expect = 5.4e-30, Sum P(3) = 5.4e-30
Identities = 40/163 (24%), Positives = 65/163 (39%)
Query: 15 EEGASGFLQKKIANDGSENGGKEVSDINWNSV---NKIFSGDVSEKCAAFGS------KH 65
EE AS +++ A S N + + D S+ N I S V +KC+++G K
Sbjct: 332 EENASNKRKRRAA--ASANESERLLDKITQSIRGYNAIES--VIKKCSSYGDLVTSQMKK 387
Query: 66 WASVYLASTPQQAAAMGLKFPGVDEVTDFSSNCPNMWKFRSIITYRLCKVSGSVEEI-ED 124
W V + + M L D+ D +++ N + K + + E
Sbjct: 388 WG-VQVEGDNSELDLMNLGEDDDDDNDDGNNDNNNSNNNNTAGADATSKEKEDTKAVVEG 446
Query: 125 VDGNSDDPFVADAIAN-EKELALSEEQRKKFRKVKEEDDANMD 166
D S +P A A A E+E K KV E++D ++D
Sbjct: 447 FDETSAEPTPAPAPAPVERETKRIRNTTKP--KVVEDEDDDVD 487
Score = 40 (19.1 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 210 SLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKER 245
+L DD D GNN+ N T +++ KE+
Sbjct: 403 NLGEDDDDDND-DGNNDNNNSNNNNTAGADATSKEK 437
Score = 39 (18.8 bits), Expect = 1.8e-29, Sum P(3) = 1.8e-29
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 120 EEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRK 156
E++E DG+ DD + +A K + + RK
Sbjct: 517 EDVEYDDGDDDDDDDDEFVATRKNTHVISTTSRNGRK 553
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 182 (69.1 bits), Expect = 5.4e-30, Sum P(4) = 5.4e-30
Identities = 51/127 (40%), Positives = 66/127 (51%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL K L+F Q + ++E Y + +G + RL
Sbjct: 878 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAY------------RGFKYLRL 925
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T++ +R L++ FNEP L+STRAG LG+NL SA+ VII D WNP DLQ
Sbjct: 926 DGTTKAEDRGMLLKTFNEP-GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQ 984
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 985 AQDRAHR 991
Score = 177 (67.4 bits), Expect = 5.4e-30, Sum P(4) = 5.4e-30
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RR+ LTG+PLQN L E + +++F+ S
Sbjct: 677 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCS 736
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 737 TFEQWFNAPFAMTGEKVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVEAQLPEKVEY 793
Query: 837 VITVKLSPLQRRLYKRFLDLHG--FTNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S LQR LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 794 VIKCDMSALQRVLY-RHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 852
Score = 126 (49.4 bits), Expect = 5.4e-30, Sum P(4) = 5.4e-30
Identities = 40/140 (28%), Positives = 65/140 (46%)
Query: 517 LMNSVTLDGDLSAGASIEVLGDAITGY--IVNVVREKGEEAVRIPSSISAKLKAHQVVGI 574
++ + D D G S + L + Y + + V E+ ++ + ++ LK +Q+ G+
Sbjct: 505 IIENAKQDVDDEYGVS-QALARGLQSYYAVAHAVTERVDKQSAL--MVNGVLKQYQIKGL 561
Query: 575 RFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 634
++ V + L ILA MGLGKT Q IA + M + LI+ P
Sbjct: 562 EWL----------VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRIN-GPFLIIVP 610
Query: 635 VNVLHNWKQEFMKWRPSELK 654
++ L NW EF KW PS +K
Sbjct: 611 LSTLSNWAYEFDKWAPSVVK 630
Score = 64 (27.6 bits), Expect = 2.4e-23, Sum P(5) = 2.4e-23
Identities = 26/96 (27%), Positives = 43/96 (44%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDA 539
L +A + E+ +++ IE+ER+ R K Q S L ++ + S ++ L A
Sbjct: 246 LREARITEKLEKQQKIEQERKRRQKH---QEYLNSILQHAKDFREYHRSVTGKLQKLTKA 302
Query: 540 ITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIR 575
+ Y N RE+ +E RI +L A G R
Sbjct: 303 VATYHANTEREQKKENERIEKERMRRLMAEDEEGYR 338
Score = 42 (19.8 bits), Expect = 5.4e-30, Sum P(4) = 5.4e-30
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 110 YRL-CKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKV 157
YRL +++ ++E+E++ G+ A K L L QR+ ++V
Sbjct: 171 YRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV 219
Score = 41 (19.5 bits), Expect = 6.8e-30, Sum P(4) = 6.8e-30
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 131 DPFVA---DAIANEKELALSEEQRKKFRKVKEED 161
D +VA + + K +++E++KK +K K E+
Sbjct: 357 DEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN 390
Score = 40 (19.1 bits), Expect = 2.4e-23, Sum P(5) = 2.4e-23
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 714 DGPDILVCDEAHMIKNTRAD 733
D D+ D H+I+N + D
Sbjct: 493 DSDDVSEVDARHIIENAKQD 512
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 235 (87.8 bits), Expect = 6.1e-30, Sum P(2) = 6.1e-30
Identities = 78/262 (29%), Positives = 127/262 (48%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
KG ILA MGLGKT Q I+ L + +L L+V P++ + W++EF +W P E
Sbjct: 422 KGNSSILADEMGLGKTIQSISLLASLFHRYDLA-GPYLVVVPLSTMAAWQKEFAQWAP-E 479
Query: 653 LKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHAL 712
+ L V+M + VSRD + +W GG + A ++ +KD+ I
Sbjct: 480 MN-LVVYMGDVVSRDMIRQY--EWFV-GGTKKMKINAILT-TYEILLKDKAFLSSI---- 530
Query: 713 QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGF 772
D +LV DEAH +KN + ++L Q + ++ +TG+PLQN+L E + ++ F+
Sbjct: 531 -DWAALLV-DEAHRLKNDESLLYKSLTQFRFNHKLLITGTPLQNSLKELWALLHFIMPEK 588
Query: 773 LGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP 832
EF H S + + L+++L+ F+ R V+K LPP
Sbjct: 589 FDCWEEFETA---------HNESNHKGISA-------LHKKLEPFLLRRVKKDVEKSLPP 632
Query: 833 KTVFVITVKLSPLQRRLYKRFL 854
KT ++ V ++ Q++ YK L
Sbjct: 633 KTEQILRVDMTAHQKQFYKWIL 654
Score = 194 (73.4 bits), Expect = 6.1e-30, Sum P(2) = 6.1e-30
Identities = 52/130 (40%), Positives = 74/130 (56%)
Query: 956 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
L SGK++LL +L + G + L+FSQ + LD+++ YL +L R Q
Sbjct: 707 LKSSGKLILLDKLLCRLKDKGHRVLIFSQMVMMLDILQEYL-QLRRFPSQ---------- 755
Query: 1016 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1075
RLDG + R++ ++ +N P + L+STRAG LGINL +A+ VII D WNP
Sbjct: 756 -RLDGSMRADLRKQALDHYNAPGSTDF-AFLLSTRAGGLGINLATADTVIIFDSDWNPQN 813
Query: 1076 DLQAIYRAWR 1085
DLQA+ RA R
Sbjct: 814 DLQAMSRAHR 823
Score = 52 (23.4 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 858 GFTNDRVSNEKIRKSFFA---GYQALAQIWNHPGILQLTKDKG 897
G ND++ +K + FF G+ L W L L KG
Sbjct: 224 GDPNDQIPGDKTEQQFFVKWTGWSHLHNTWESENSLALMNAKG 266
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 178 (67.7 bits), Expect = 6.4e-30, Sum P(4) = 6.4e-30
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RRI LTG+PLQN L E + +++F+ S
Sbjct: 855 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCS 914
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 915 TFEQWFNAPFAMTGERVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVESQLPEKVEY 971
Query: 837 VITVKLSPLQRRLYKRFLDLHGF--TNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S LQ+ LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 972 VIKCDMSALQKILY-RHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ 1030
Score = 173 (66.0 bits), Expect = 6.4e-30, Sum P(4) = 6.4e-30
Identities = 49/127 (38%), Positives = 68/127 (53%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL + L+F Q + ++E Y + + L+ RL
Sbjct: 1056 SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAF------RNFLY------LRL 1103
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T+S +R L+++FNEP + L+STRAG LG+NL +A+ V+I D WNP DLQ
Sbjct: 1104 DGTTKSEDRAALLKKFNEP-GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQ 1162
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1163 AQDRAHR 1169
Score = 136 (52.9 bits), Expect = 6.4e-30, Sum P(4) = 6.4e-30
Identities = 55/221 (24%), Positives = 96/221 (43%)
Query: 483 DAELGEETKRKIAIEKERQERL----KSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGD 538
+++ EE + + + +E +E++ S +V +++ + D D G
Sbjct: 646 ESDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGS 705
Query: 539 AITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCI 598
+ + + E+ E+ + I+ LK +Q+ G+ +M V + L I
Sbjct: 706 QSYYTVAHAISERVEKQSAL--LINGTLKHYQLQGLEWM----------VSLYNNNLNGI 753
Query: 599 LAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRV 658
LA MGLGKT Q IA + M L LI+ P++ L NW EF KW PS +K
Sbjct: 754 LADEMGLGKTIQTIALITYLMEHKRLN-GPYLIIVPLSTLSNWTYEFDKWAPSVVK---- 808
Query: 659 FMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHV 699
+ RR+ L+ + R+ G F + T + + KH+
Sbjct: 809 ISYKGTPAMRRS-LVPQLRS--GKFNVLLTTYEYIIKDKHI 846
Score = 67 (28.6 bits), Expect = 7.1e-23, Sum P(4) = 7.1e-23
Identities = 26/96 (27%), Positives = 43/96 (44%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDA 539
L +A + E+ +++ IE+ER+ R K Q S L ++ + S I+ L A
Sbjct: 430 LREARMTEKLEKQQKIEQERKRRQKH---QEYLNSILQHAKDFKEYHRSVAGKIQKLSKA 486
Query: 540 ITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIR 575
+ + N RE+ +E RI +L A G R
Sbjct: 487 VATWHANTEREQKKETERIEKERMRRLMAEDEEGYR 522
Score = 43 (20.2 bits), Expect = 6.4e-30, Sum P(4) = 6.4e-30
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 110 YRL-CKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKV 157
YRL +++ ++E+E + G+ A K L L QR+ ++V
Sbjct: 355 YRLQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQLRQEV 403
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 178 (67.7 bits), Expect = 7.9e-30, Sum P(4) = 7.9e-30
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RRI LTG+PLQN L E + +++F+ S
Sbjct: 853 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCS 912
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 913 TFEQWFNAPFAMTGERVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVESQLPEKVEY 969
Query: 837 VITVKLSPLQRRLYKRFLDLHGF--TNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S LQ+ LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 970 VIKCDMSALQKILY-RHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ 1028
Score = 173 (66.0 bits), Expect = 7.9e-30, Sum P(4) = 7.9e-30
Identities = 49/127 (38%), Positives = 68/127 (53%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL + L+F Q + ++E Y + + L+ RL
Sbjct: 1054 SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAF------RNFLY------LRL 1101
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T+S +R L+++FNEP + L+STRAG LG+NL +A+ V+I D WNP DLQ
Sbjct: 1102 DGTTKSEDRAALLKKFNEP-GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQ 1160
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1161 AQDRAHR 1167
Score = 136 (52.9 bits), Expect = 7.9e-30, Sum P(4) = 7.9e-30
Identities = 55/221 (24%), Positives = 96/221 (43%)
Query: 483 DAELGEETKRKIAIEKERQERL----KSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGD 538
+++ EE + + + +E +E++ S +V +++ + D D G
Sbjct: 644 ESDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGS 703
Query: 539 AITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCI 598
+ + + E+ E+ + I+ LK +Q+ G+ +M V + L I
Sbjct: 704 QSYYTVAHAISERVEKQSAL--LINGTLKHYQLQGLEWM----------VSLYNNNLNGI 751
Query: 599 LAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRV 658
LA MGLGKT Q IA + M L LI+ P++ L NW EF KW PS +K
Sbjct: 752 LADEMGLGKTIQTIALITYLMEHKRLN-GPYLIIVPLSTLSNWTYEFDKWAPSVVK---- 806
Query: 659 FMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHV 699
+ RR+ L+ + R+ G F + T + + KH+
Sbjct: 807 ISYKGTPAMRRS-LVPQLRS--GKFNVLLTTYEYIIKDKHI 844
Score = 67 (28.6 bits), Expect = 8.8e-23, Sum P(4) = 8.8e-23
Identities = 26/96 (27%), Positives = 43/96 (44%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDA 539
L +A + E+ +++ IE+ER+ R K Q S L ++ + S I+ L A
Sbjct: 428 LREARMTEKLEKQQKIEQERKRRQKH---QEYLNSILQHAKDFKEYHRSVAGKIQKLSKA 484
Query: 540 ITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIR 575
+ + N RE+ +E RI +L A G R
Sbjct: 485 VATWHANTEREQKKETERIEKERMRRLMAEDEEGYR 520
Score = 43 (20.2 bits), Expect = 7.9e-30, Sum P(4) = 7.9e-30
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 110 YRL-CKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKV 157
YRL +++ ++E+E + G+ A K L L QR+ ++V
Sbjct: 353 YRLQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQLRQEV 401
Score = 37 (18.1 bits), Expect = 3.2e-29, Sum P(4) = 3.2e-29
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 131 DPFVADA--IANEKELALSEEQRKKFRKVKEEDDANMD 166
D +VA+ + E + A + +++KK R+ K++ + N +
Sbjct: 539 DEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAE 576
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 178 (67.7 bits), Expect = 8.3e-30, Sum P(4) = 8.3e-30
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RRI LTG+PLQN L E + +++F+ S
Sbjct: 855 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCS 914
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 915 TFEQWFNAPFAMTGERVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVESQLPEKVEY 971
Query: 837 VITVKLSPLQRRLYKRFLDLHGF--TNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S LQ+ LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 972 VIKCDMSALQKILY-RHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ 1030
Score = 173 (66.0 bits), Expect = 8.3e-30, Sum P(4) = 8.3e-30
Identities = 49/127 (38%), Positives = 68/127 (53%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL + L+F Q + ++E Y + + L+ RL
Sbjct: 1056 SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAF------RNFLY------LRL 1103
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T+S +R L+++FNEP + L+STRAG LG+NL +A+ V+I D WNP DLQ
Sbjct: 1104 DGTTKSEDRAALLKKFNEP-GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQ 1162
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1163 AQDRAHR 1169
Score = 136 (52.9 bits), Expect = 8.3e-30, Sum P(4) = 8.3e-30
Identities = 55/221 (24%), Positives = 96/221 (43%)
Query: 483 DAELGEETKRKIAIEKERQERL----KSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGD 538
+++ EE + + + +E +E++ S +V +++ + D D G
Sbjct: 646 ESDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGS 705
Query: 539 AITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCI 598
+ + + E+ E+ + I+ LK +Q+ G+ +M V + L I
Sbjct: 706 QSYYTVAHAISERVEKQSAL--LINGTLKHYQLQGLEWM----------VSLYNNNLNGI 753
Query: 599 LAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRV 658
LA MGLGKT Q IA + M L LI+ P++ L NW EF KW PS +K
Sbjct: 754 LADEMGLGKTIQTIALITYLMEHKRLN-GPYLIIVPLSTLSNWTYEFDKWAPSVVK---- 808
Query: 659 FMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHV 699
+ RR+ L+ + R+ G F + T + + KH+
Sbjct: 809 ISYKGTPAMRRS-LVPQLRS--GKFNVLLTTYEYIIKDKHI 846
Score = 67 (28.6 bits), Expect = 9.3e-23, Sum P(4) = 9.3e-23
Identities = 26/96 (27%), Positives = 43/96 (44%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDA 539
L +A + E+ +++ IE+ER+ R K Q S L ++ + S I+ L A
Sbjct: 430 LREARMTEKLEKQQKIEQERKRRQKH---QEYLNSILQHAKDFKEYHRSVAGKIQKLSKA 486
Query: 540 ITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIR 575
+ + N RE+ +E RI +L A G R
Sbjct: 487 VATWHANTEREQKKETERIEKERMRRLMAEDEEGYR 522
Score = 43 (20.2 bits), Expect = 8.3e-30, Sum P(4) = 8.3e-30
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 110 YRL-CKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKV 157
YRL +++ ++E+E + G+ A K L L QR+ ++V
Sbjct: 355 YRLQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQLRQEV 403
>UNIPROTKB|F2Z2R5 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 EMBL:AL035406 HGNC:HGNC:16816
ChiTaRS:CHD5 IPI:IPI00444866 ProteinModelPortal:F2Z2R5 SMR:F2Z2R5
Ensembl:ENST00000496404 ArrayExpress:F2Z2R5 Bgee:F2Z2R5
Uniprot:F2Z2R5
Length = 1225
Score = 206 (77.6 bits), Expect = 8.9e-30, Sum P(4) = 8.9e-30
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L + G + L+FSQ LDL+E +L +G + R+
Sbjct: 1023 SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY------------EGYKYERI 1070
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1071 DGGITGGLRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1129
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1130 AFSRAHR 1136
Score = 204 (76.9 bits), Expect = 8.9e-30, Sum P(4) = 8.9e-30
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 717 QGTDTILADEMGLGKTVQTIVFLYSLYKEGH-SKGPYLVSAPLSTIINWEREFEMWAPDF 775
Query: 653 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 711
E S R E + A + G + + F + + I A
Sbjct: 776 YVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELIT-IDQA 834
Query: 712 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 769
+ + LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + +++F+
Sbjct: 835 ILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFL- 893
Query: 770 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD 829
+ F N + +E + + + ED +I ++ H L ++R+ +V K +
Sbjct: 894 -----TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADVFK-N 939
Query: 830 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFT--NDRVSNEKIRKSFFAGYQALAQIWNHP 887
+P KT ++ V+LS +Q++ YK F+ F N + ++ S L + NHP
Sbjct: 940 MPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQV--SLLNIMMDLKKCCNHP 996
Score = 63 (27.2 bits), Expect = 8.9e-30, Sum P(4) = 8.9e-30
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 365 KKMHVKDADCSEC----YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASC 420
KK + D D E YC C + +++ C +C + C+ + +A E + SC
Sbjct: 328 KKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKA---PEGKWSC 384
Query: 421 WQC 423
C
Sbjct: 385 PHC 387
Score = 50 (22.7 bits), Expect = 8.9e-30, Sum P(4) = 8.9e-30
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 114 KVSGSVEEI----EDVDGNSDDPFVADAIANEKELA-LSEEQRKKF-RKVKEEDDANMD 166
K GS +E+ ED++ S+ +D N+K+ L +++ KK RK K+ED+ + D
Sbjct: 67 KKEGSNDELSENEEDLEEKSESEG-SDYSPNKKKKKKLKDKKEKKAKRKKKDEDEDDND 124
Score = 48 (22.0 bits), Expect = 1.4e-29, Sum P(4) = 1.4e-29
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 102 WKFRSIITYRLCKVSGSVEEIEDVDGNSDDPFVADA-IANEKELALSEEQRKKFRKVKEE 160
++F I R K S EE E + + D + A + +E AL ++ +++ RK K
Sbjct: 276 FRFGGISNKR--KKGSSSEEDEREESDFDSASIHSASVRSECSAALGKKSKRR-RKKKRI 332
Query: 161 DDAN 164
DD +
Sbjct: 333 DDGD 336
Score = 46 (21.3 bits), Expect = 9.4e-14, Sum P(4) = 9.4e-14
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 707 EICHALQDGPDILVCD 722
E C +DG ++L CD
Sbjct: 417 EFCRVCKDGGELLCCD 432
Score = 43 (20.2 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 343 QDYCEVCQQGGEIILCD 359
>RGD|1582725 [details] [associations]
symbol:Chd5 "chromodomain helicase DNA binding protein 5"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1582725 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OrthoDB:EOG4WH8JX
IPI:IPI00948282 Ensembl:ENSRNOT00000067364 UCSC:RGD:1582725
ArrayExpress:D4A5U0 Uniprot:D4A5U0
Length = 1940
Score = 210 (79.0 bits), Expect = 9.0e-30, Sum P(4) = 9.0e-30
Identities = 82/300 (27%), Positives = 138/300 (46%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 715 QGTDTILADEMGLGKTVQTIVFLYSLYKEGH-SKGPYLVSAPLSTIINWEREFEMWAPDF 773
Query: 653 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 711
E S R E + A +GG + + F + + I A
Sbjct: 774 YVVTYTGDKESRSVIRENEFSFEDNAIRGGKKVFRMKKEVQIKFHVLLTSYELIT-IDQA 832
Query: 712 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 769
+ + LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + +++F+
Sbjct: 833 ILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFL- 891
Query: 770 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD 829
+ F N + +E + + + ED +I ++ H L ++R+ +V K +
Sbjct: 892 -----TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADVFK-N 937
Query: 830 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFT--NDRVSNEKIRKSFFAGYQALAQIWNHP 887
+P KT ++ V+LS +Q++ YK F+ F N + ++ S L + NHP
Sbjct: 938 MPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQV--SLLNIMMDLKKCCNHP 994
Score = 206 (77.6 bits), Expect = 9.0e-30, Sum P(4) = 9.0e-30
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L + G + L+FSQ LDL+E +L +G + R+
Sbjct: 1021 SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY------------EGYKYERI 1068
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1069 DGGITGGLRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1127
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1128 AFSRAHR 1134
Score = 63 (27.2 bits), Expect = 9.0e-30, Sum P(4) = 9.0e-30
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 365 KKMHVKDADCSEC----YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASC 420
KK + D D E YC C + +++ C +C + C+ + +A E + SC
Sbjct: 326 KKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKA---PEGKWSC 382
Query: 421 WQC 423
C
Sbjct: 383 PHC 385
Score = 53 (23.7 bits), Expect = 9.0e-30, Sum P(4) = 9.0e-30
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 114 KVSGSVEEIEDVDGNSDDPFV-ADAIANEKELALSEEQRKKFRKVKEEDDAN 164
K S EE E D + D+ + + ++ +E AL ++ +++ RK K DD +
Sbjct: 284 KKGSSSEEDEPEDSDLDNASIHSSSVRSECSAALGKKNKRR-RKKKRIDDGD 334
Score = 49 (22.3 bits), Expect = 2.3e-29, Sum P(4) = 2.3e-29
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 114 KVSGSVEEI----EDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDD 162
K GS +E+ ED++ S+ + +K+ L E++ KK ++ K ++D
Sbjct: 66 KKEGSNDELSENEEDLEEKSESEGSDYSPTKKKKKKLKEKKEKKAKRKKRDED 118
Score = 46 (21.3 bits), Expect = 3.9e-13, Sum P(4) = 3.9e-13
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 707 EICHALQDGPDILVCD 722
E C +DG ++L CD
Sbjct: 415 EFCRVCKDGGELLCCD 430
Score = 43 (20.2 bits), Expect = 3.8e-11, Sum P(3) = 3.8e-11
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 341 QDYCEVCQQGGEIILCD 357
>UNIPROTKB|J9NRN3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 EMBL:AAEX03003895
EMBL:AAEX03003896 EMBL:AAEX03003897 Ensembl:ENSCAFT00000044104
Uniprot:J9NRN3
Length = 1195
Score = 206 (77.6 bits), Expect = 9.9e-30, Sum P(4) = 9.9e-30
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L + G + L+FSQ LDL+E +L +G + R+
Sbjct: 997 SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY------------EGYKYERI 1044
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1045 DGGITGGLRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1103
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1104 AFSRAHR 1110
Score = 204 (76.9 bits), Expect = 9.9e-30, Sum P(4) = 9.9e-30
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 691 QGTDTILADEMGLGKTVQTIVFLYSLYKEGH-SKGPYLVSAPLSTIINWEREFEMWAPDF 749
Query: 653 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 711
E S R E + A + G + + F + + I A
Sbjct: 750 YVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELIT-IDQA 808
Query: 712 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 769
+ + LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + +++F+
Sbjct: 809 ILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFL- 867
Query: 770 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD 829
+ F N + +E + + + ED +I ++ H L ++R+ +V K +
Sbjct: 868 -----TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADVFK-N 913
Query: 830 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFT--NDRVSNEKIRKSFFAGYQALAQIWNHP 887
+P KT ++ V+LS +Q++ YK F+ F N + ++ S L + NHP
Sbjct: 914 MPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQV--SLLNIMMDLKKCCNHP 970
Score = 63 (27.2 bits), Expect = 9.9e-30, Sum P(4) = 9.9e-30
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 365 KKMHVKDADCSEC----YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASC 420
KK + D D E YC C + +++ C +C + C+ + +A E + SC
Sbjct: 302 KKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKA---PEGKWSC 358
Query: 421 WQC 423
C
Sbjct: 359 PHC 361
Score = 49 (22.3 bits), Expect = 9.9e-30, Sum P(4) = 9.9e-30
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 102 WKFRSIITYRLCKVSGSVEEIEDVDGNSDDPFV-ADAIANEKELALSEEQRKKFRKVKEE 160
++F I R K S EE E + + D + + ++ +E AL ++ +++ RK K
Sbjct: 250 FRFGGISNKR--KKGSSSEEDEREESDLDSASIHSSSVRSEGSTALGKKSKRR-RKKKRI 306
Query: 161 DDAN 164
DD +
Sbjct: 307 DDGD 310
Score = 46 (21.3 bits), Expect = 1.0e-13, Sum P(4) = 1.0e-13
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 707 EICHALQDGPDILVCD 722
E C +DG ++L CD
Sbjct: 391 EFCRVCKDGGELLCCD 406
Score = 44 (20.5 bits), Expect = 3.2e-29, Sum P(4) = 3.2e-29
Identities = 14/54 (25%), Positives = 31/54 (57%)
Query: 114 KVSGSVEEI----EDVDGNSDDPFVADAIANEKELA-LSEEQRKKFRKVKEEDD 162
K GS +E+ +D++ S+ +D N+K+ L +++ KK ++ +++DD
Sbjct: 41 KKEGSNDELSENEDDLEEKSESEG-SDYSPNKKKKKKLKDKKEKKAKRKRKDDD 93
Score = 43 (20.2 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 317 QDYCEVCQQGGEIILCD 333
Score = 42 (19.8 bits), Expect = 5.2e-29, Sum P(4) = 5.2e-29
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 20 GFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAAFGSK 64
G K+ SE +E SD++ S++ S SE A G K
Sbjct: 254 GISNKRKKGSSSEEDEREESDLDSASIHS--SSVRSEGSTALGKK 296
Score = 37 (18.1 bits), Expect = 1.7e-28, Sum P(4) = 1.7e-28
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 205 VDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNG 250
V K +KK + G + N E E ++E+S S G
Sbjct: 19 VGLPKKKKSKKLKENRSKGKRKKKEGSNDELSENEDDLEEKSESEG 64
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 211 (79.3 bits), Expect = 1.2e-29, Sum P(4) = 1.2e-29
Identities = 81/300 (27%), Positives = 136/300 (45%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q I FLY+ + L+ P++ + NW++EF W P
Sbjct: 648 QGTDTILADEMGLGKTVQTIVFLYSLYKEQGHSKGPYLVSAPLSTIINWEREFEMWAPDF 707
Query: 653 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 711
E S R E + A + G + + F + + I A
Sbjct: 708 YVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEAQIKFHVLLTSYELIT-IDQA 766
Query: 712 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 769
+ + LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + +++F+
Sbjct: 767 VLGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFL- 825
Query: 770 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD 829
+ F N + +E + + + ED +I ++ H L ++R+ +V K +
Sbjct: 826 -----TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADVFK-N 871
Query: 830 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFT--NDRVSNEKIRKSFFAGYQALAQIWNHP 887
+P KT ++ V+LS +Q++ YK F+ F N + ++ S L + NHP
Sbjct: 872 MPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQV--SLLNIMMDLKKCCNHP 928
Score = 205 (77.2 bits), Expect = 1.2e-29, Sum P(4) = 1.2e-29
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L + G + L+FSQ LDL+E +L +G + R+
Sbjct: 955 SGKLMLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEY------------EGYKYERI 1002
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1003 DGGITGGLRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1061
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1062 AFSRAHR 1068
Score = 61 (26.5 bits), Expect = 1.2e-29, Sum P(4) = 1.2e-29
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 365 KKMHVKDADCSEC----YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASC 420
KK +++ D E YC C + +++ C +C + C+ + +A E + SC
Sbjct: 258 KKKRIEEGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKA---PEGKWSC 314
Query: 421 WQC 423
C
Sbjct: 315 PHC 317
Score = 52 (23.4 bits), Expect = 1.2e-29, Sum P(4) = 1.2e-29
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 114 KVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDD 162
++S + EEIE+ + + + +K E++ K+ +K +EEDD
Sbjct: 5 EISDNDEEIEEKSESEGSDYSPNKKKKKKLKEKKEKKTKRKKKDEEEDD 53
Score = 51 (23.0 bits), Expect = 2.2e-13, Sum P(4) = 2.2e-13
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 696 GKHVKDRNMAREICHALQDGPDILVCD 722
G+ +D +M E C +DG ++L CD
Sbjct: 337 GEEEEDDHM--EFCRVCKDGGELLCCD 361
Score = 44 (20.5 bits), Expect = 8.0e-29, Sum P(4) = 8.0e-29
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 20 GFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAA 60
G K+ SE +E SD + S+N S V +C+A
Sbjct: 210 GIPSKRKKGSSSEEEEREESDFDSASIN---SSSVRSECSA 247
Score = 43 (20.2 bits), Expect = 4.5e-11, Sum P(3) = 4.5e-11
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 273 QDYCEVCQQGGEIILCD 289
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 178 (67.7 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 50/127 (39%), Positives = 69/127 (54%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL K L+F Q + ++E Y + ++ K + RL
Sbjct: 1091 SGKFELLDRILPKLRATNHKVLLFCQMTTLMTIMEDYFA-----------YRNFK-YLRL 1138
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T++ +R L++ FN+P ++ L+STRAG LG+NL SA+ VII D WNP DLQ
Sbjct: 1139 DGTTKAEDRGMLLKNFNDPSHQYF-IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQ 1197
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1198 AQDRAHR 1204
Score = 178 (67.7 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RR+ LTG+PLQN L E + +++F+ S
Sbjct: 890 MIVDEGHRMKNHHCKLTQVLNTHYLAPRRVLLTGTPLQNKLPELWALLNFLLPTIFKSCS 949
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 950 TFEQWFNAPFAMTGEKVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVEAQLPEKVEY 1006
Query: 837 VITVKLSPLQRRLYKRFLDLHG--FTNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S LQR LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 1007 VIKCDMSALQRVLY-RHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 1065
Score = 128 (50.1 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 37/111 (33%), Positives = 55/111 (49%)
Query: 544 IVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTM 603
+ + V EK E+ + ++ +LK +Q+ G+ ++ V + L ILA M
Sbjct: 746 VAHAVTEKVEKQSSL--LVNGQLKQYQIKGLEWL----------VSLYNNNLNGILADEM 793
Query: 604 GLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELK 654
GLGKT Q IA + M L LI+ P++ L NW EF KW PS +K
Sbjct: 794 GLGKTIQTIALITYLMEFKRLN-GPFLIIVPLSTLSNWVYEFDKWAPSVVK 843
Score = 66 (28.3 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
Identities = 27/96 (28%), Positives = 44/96 (45%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDA 539
L +A + E+ +++ IE+ER+ R K Q S L ++ + S A ++ L A
Sbjct: 465 LREARITEKLEKQQKIEQERKRRQKH---QEYLNSILQHAKDFKEYHRSITAKMQKLTKA 521
Query: 540 ITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIR 575
+ Y N RE+ +E RI +L A G R
Sbjct: 522 VATYHANTEREQKKENERIEKERMRRLMAEDEEGYR 557
Score = 44 (20.5 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 188 GSVD-WTIEDSAVETRPLVDASKSLSNKKTDDGDMP 222
G +D W + E P D+ S S+++ DD + P
Sbjct: 655 GQLDTWLEMNPGYEVAPRSDSEDSGSDEEEDDEEEP 690
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 192 (72.6 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 48/126 (38%), Positives = 69/126 (54%)
Query: 960 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLD 1019
GK+ L +L G + L+F+Q LD++E +L+ G L+ RLD
Sbjct: 2043 GKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTY------HGHLY------LRLD 2090
Query: 1020 GRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQA 1079
G T +RQ L+ERFN +KR+ C ++STR+G +G+NL A+ V+ D WNPT D QA
Sbjct: 2091 GSTRVEQRQALMERFNA--DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQA 2148
Query: 1080 IYRAWR 1085
R R
Sbjct: 2149 QDRCHR 2154
Score = 189 (71.6 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 54/171 (31%), Positives = 85/171 (49%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
L+ DEA IKN ++ Q+L QRR+ LTG+PLQN+LME + ++ F+ S E
Sbjct: 743 LILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHRE 802
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F+ F NP+ G S + ++ + L++ L+ F+ R V+K +P K VI
Sbjct: 803 FKEWFSNPL-TGMIEGSQEYNEGLVKR----LHKVLRPFLLRRVKVDVEKQMPKKYEHVI 857
Query: 839 TVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGI 889
+LS QR LY F+ T + ++ S L ++ NHP +
Sbjct: 858 RCRLSKRQRCLYDDFM-AQTTTKETLATGHFM-SVINILMQLRKVCNHPNL 906
Score = 117 (46.2 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 38/135 (28%), Positives = 64/135 (47%)
Query: 558 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL-Y 616
IP + +L+ +Q +G+ ++ V +K L ILA MGLGKT Q I+ L +
Sbjct: 610 IPLLLRGQLREYQHIGLDWL----------VTMYEKKLNGILADEMGLGKTIQTISLLAH 659
Query: 617 TAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKW 676
A N G LI+ P +V+ NW+ E +W PS ++ ++R+ + W
Sbjct: 660 LACEKGNWGPH--LIIVPTSVMLNWEMELKRWCPS----FKILTYYGAQKERKLKRQG-W 712
Query: 677 RAKGGVFLIGYTAFR 691
K F + T+++
Sbjct: 713 -TKPNAFHVCITSYK 726
Score = 48 (22.0 bits), Expect = 2.4e-29, Sum P(5) = 2.4e-29
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 291 SDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQS 328
S ++D V+D + ++HS E +A++ S +S
Sbjct: 494 SSQSDSVEDRSEDEEDEHSEEEETSGSSASEESESEES 531
Score = 42 (19.8 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 116 SGSVEE-IEDV-DGNSDDPFVADAIANEK-ELALSEEQRKKFRKVKEEDD 162
S SVE+ ED D +S++ + + A+E+ E SE+ + + + +EE+D
Sbjct: 497 SDSVEDRSEDEEDEHSEEEETSGSSASEESESEESEDAQSQSQADEEEED 546
Score = 41 (19.5 bits), Expect = 1.9e-29, Sum P(4) = 1.9e-29
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 116 SGSVE-EIED-VDGNSDDPFVADAIANEK---ELALSEEQRKKFRKVKEEDD 162
SGS E E ED VD NS D + E+ E + S+ + R EED+
Sbjct: 459 SGSSEDEDEDEVDANSSDCEPEGPVEAEEPPQEDSSSQSDSVEDRSEDEEDE 510
Score = 40 (19.1 bits), Expect = 2.4e-29, Sum P(5) = 2.4e-29
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 148 EEQRKKFRKVKEEDDANM 165
EEQR+K + + E+ A +
Sbjct: 174 EEQRQKEERARREEQAKL 191
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 182 (69.1 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 51/127 (40%), Positives = 66/127 (51%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL K L+F Q + ++E Y + +G + RL
Sbjct: 1071 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAY------------RGFKYLRL 1118
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T++ +R L++ FNEP L+STRAG LG+NL SA+ VII D WNP DLQ
Sbjct: 1119 DGTTKAEDRGMLLKTFNEP-GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQ 1177
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1178 AQDRAHR 1184
Score = 177 (67.4 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RR+ LTG+PLQN L E + +++F+ S
Sbjct: 870 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCS 929
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 930 TFEQWFNAPFAMTGEKVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVEAQLPEKVEY 986
Query: 837 VITVKLSPLQRRLYKRFLDLHG--FTNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S LQR LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 987 VIKCDMSALQRVLY-RHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 1045
Score = 126 (49.4 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 40/140 (28%), Positives = 65/140 (46%)
Query: 517 LMNSVTLDGDLSAGASIEVLGDAITGY--IVNVVREKGEEAVRIPSSISAKLKAHQVVGI 574
++ + D D G S + L + Y + + V E+ ++ + ++ LK +Q+ G+
Sbjct: 698 IIENAKQDVDDEYGVS-QALARGLQSYYAVAHAVTERVDKQSAL--MVNGVLKQYQIKGL 754
Query: 575 RFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 634
++ V + L ILA MGLGKT Q IA + M + LI+ P
Sbjct: 755 EWL----------VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRIN-GPFLIIVP 803
Query: 635 VNVLHNWKQEFMKWRPSELK 654
++ L NW EF KW PS +K
Sbjct: 804 LSTLSNWAYEFDKWAPSVVK 823
Score = 66 (28.3 bits), Expect = 6.1e-23, Sum P(5) = 6.1e-23
Identities = 27/96 (28%), Positives = 43/96 (44%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDA 539
L +A + E+ +++ IE+ER+ R K Q S L ++ + S I+ L A
Sbjct: 439 LREARITEKLEKQQKIEQERKRRQKH---QEYLNSILQHAKDFKEYHRSVTGKIQKLTKA 495
Query: 540 ITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIR 575
+ Y N RE+ +E RI +L A G R
Sbjct: 496 VATYHANTEREQKKENERIEKERMRRLMAEDEEGYR 531
Score = 42 (19.8 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 110 YRL-CKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKV 157
YRL +++ ++E+E++ G+ A K L L QR+ ++V
Sbjct: 364 YRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV 412
Score = 41 (19.5 bits), Expect = 2.1e-29, Sum P(4) = 2.1e-29
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 131 DPFVA---DAIANEKELALSEEQRKKFRKVKEED 161
D +VA + + K +++E++KK +K K E+
Sbjct: 550 DEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN 583
Score = 40 (19.1 bits), Expect = 6.1e-23, Sum P(5) = 6.1e-23
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 714 DGPDILVCDEAHMIKNTRAD 733
D D+ D H+I+N + D
Sbjct: 686 DSDDVSEVDARHIIENAKQD 705
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 182 (69.1 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 51/127 (40%), Positives = 66/127 (51%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL K L+F Q + ++E Y + +G + RL
Sbjct: 1079 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAY------------RGFKYLRL 1126
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T++ +R L++ FNEP L+STRAG LG+NL SA+ VII D WNP DLQ
Sbjct: 1127 DGTTKAEDRGMLLKTFNEP-GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQ 1185
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1186 AQDRAHR 1192
Score = 177 (67.4 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RR+ LTG+PLQN L E + +++F+ S
Sbjct: 878 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCS 937
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 938 TFEQWFNAPFAMTGEKVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVEAQLPEKVEY 994
Query: 837 VITVKLSPLQRRLYKRFLDLHG--FTNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S LQR LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 995 VIKCDMSALQRVLY-RHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 1053
Score = 126 (49.4 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 40/140 (28%), Positives = 65/140 (46%)
Query: 517 LMNSVTLDGDLSAGASIEVLGDAITGY--IVNVVREKGEEAVRIPSSISAKLKAHQVVGI 574
++ + D D G S + L + Y + + V E+ ++ + ++ LK +Q+ G+
Sbjct: 706 IIENAKQDVDDEYGVS-QALARGLQSYYAVAHAVTERVDKQSAL--MVNGVLKQYQIKGL 762
Query: 575 RFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 634
++ V + L ILA MGLGKT Q IA + M + LI+ P
Sbjct: 763 EWL----------VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRIN-GPFLIIVP 811
Query: 635 VNVLHNWKQEFMKWRPSELK 654
++ L NW EF KW PS +K
Sbjct: 812 LSTLSNWAYEFDKWAPSVVK 831
Score = 64 (27.6 bits), Expect = 9.9e-23, Sum P(5) = 9.9e-23
Identities = 26/96 (27%), Positives = 43/96 (44%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDA 539
L +A + E+ +++ IE+ER+ R K Q S L ++ + S ++ L A
Sbjct: 447 LREARITEKLEKQQKIEQERKRRQKH---QEYLNSILQHAKDFREYHRSVTGKLQKLTKA 503
Query: 540 ITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIR 575
+ Y N RE+ +E RI +L A G R
Sbjct: 504 VATYHANTEREQKKENERIEKERMRRLMAEDEEGYR 539
Score = 42 (19.8 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 110 YRL-CKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKV 157
YRL +++ ++E+E++ G+ A K L L QR+ ++V
Sbjct: 372 YRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV 420
Score = 41 (19.5 bits), Expect = 2.2e-29, Sum P(4) = 2.2e-29
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 131 DPFVA---DAIANEKELALSEEQRKKFRKVKEED 161
D +VA + + K +++E++KK +K K E+
Sbjct: 558 DEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN 591
Score = 40 (19.1 bits), Expect = 9.9e-23, Sum P(5) = 9.9e-23
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 714 DGPDILVCDEAHMIKNTRAD 733
D D+ D H+I+N + D
Sbjct: 694 DSDDVSEVDARHIIENAKQD 713
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 182 (69.1 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 51/127 (40%), Positives = 66/127 (51%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL K L+F Q + ++E Y + +G + RL
Sbjct: 1079 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAY------------RGFKYLRL 1126
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T++ +R L++ FNEP L+STRAG LG+NL SA+ VII D WNP DLQ
Sbjct: 1127 DGTTKAEDRGMLLKTFNEP-GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQ 1185
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1186 AQDRAHR 1192
Score = 177 (67.4 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RR+ LTG+PLQN L E + +++F+ S
Sbjct: 878 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCS 937
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 938 TFEQWFNAPFAMTGEKVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVEAQLPEKVEY 994
Query: 837 VITVKLSPLQRRLYKRFLDLHG--FTNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S LQR LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 995 VIKCDMSALQRVLY-RHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 1053
Score = 126 (49.4 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 40/140 (28%), Positives = 65/140 (46%)
Query: 517 LMNSVTLDGDLSAGASIEVLGDAITGY--IVNVVREKGEEAVRIPSSISAKLKAHQVVGI 574
++ + D D G S + L + Y + + V E+ ++ + ++ LK +Q+ G+
Sbjct: 706 IIENAKQDVDDEYGVS-QALARGLQSYYAVAHAVTERVDKQSAL--MVNGVLKQYQIKGL 762
Query: 575 RFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 634
++ V + L ILA MGLGKT Q IA + M + LI+ P
Sbjct: 763 EWL----------VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRIN-GPFLIIVP 811
Query: 635 VNVLHNWKQEFMKWRPSELK 654
++ L NW EF KW PS +K
Sbjct: 812 LSTLSNWAYEFDKWAPSVVK 831
Score = 66 (28.3 bits), Expect = 6.3e-23, Sum P(5) = 6.3e-23
Identities = 27/96 (28%), Positives = 43/96 (44%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDA 539
L +A + E+ +++ IE+ER+ R K Q S L ++ + S I+ L A
Sbjct: 447 LREARITEKLEKQQKIEQERKRRQKH---QEYLNSILQHAKDFKEYHRSVTGKIQKLTKA 503
Query: 540 ITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIR 575
+ Y N RE+ +E RI +L A G R
Sbjct: 504 VATYHANTEREQKKENERIEKERMRRLMAEDEEGYR 539
Score = 42 (19.8 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 110 YRL-CKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKV 157
YRL +++ ++E+E++ G+ A K L L QR+ ++V
Sbjct: 372 YRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV 420
Score = 41 (19.5 bits), Expect = 2.2e-29, Sum P(4) = 2.2e-29
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 131 DPFVA---DAIANEKELALSEEQRKKFRKVKEED 161
D +VA + + K +++E++KK +K K E+
Sbjct: 558 DEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN 591
Score = 40 (19.1 bits), Expect = 6.3e-23, Sum P(5) = 6.3e-23
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 714 DGPDILVCDEAHMIKNTRAD 733
D D+ D H+I+N + D
Sbjct: 694 DSDDVSEVDARHIIENAKQD 713
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 182 (69.1 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 51/127 (40%), Positives = 66/127 (51%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL K L+F Q + ++E Y + +G + RL
Sbjct: 1079 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAY------------RGFKYLRL 1126
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T++ +R L++ FNEP L+STRAG LG+NL SA+ VII D WNP DLQ
Sbjct: 1127 DGTTKAEDRGMLLKTFNEP-GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQ 1185
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1186 AQDRAHR 1192
Score = 177 (67.4 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RR+ LTG+PLQN L E + +++F+ S
Sbjct: 878 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCS 937
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 938 TFEQWFNAPFAMTGEKVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVEAQLPEKVEY 994
Query: 837 VITVKLSPLQRRLYKRFLDLHG--FTNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S LQR LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 995 VIKCDMSALQRVLY-RHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 1053
Score = 126 (49.4 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 40/140 (28%), Positives = 65/140 (46%)
Query: 517 LMNSVTLDGDLSAGASIEVLGDAITGY--IVNVVREKGEEAVRIPSSISAKLKAHQVVGI 574
++ + D D G S + L + Y + + V E+ ++ + ++ LK +Q+ G+
Sbjct: 706 IIENAKQDVDDEYGVS-QALARGLQSYYAVAHAVTERVDKQSAL--MVNGVLKQYQIKGL 762
Query: 575 RFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 634
++ V + L ILA MGLGKT Q IA + M + LI+ P
Sbjct: 763 EWL----------VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRIN-GPFLIIVP 811
Query: 635 VNVLHNWKQEFMKWRPSELK 654
++ L NW EF KW PS +K
Sbjct: 812 LSTLSNWAYEFDKWAPSVVK 831
Score = 64 (27.6 bits), Expect = 1.0e-22, Sum P(5) = 1.0e-22
Identities = 26/96 (27%), Positives = 43/96 (44%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDA 539
L +A + E+ +++ IE+ER+ R K Q S L ++ + S ++ L A
Sbjct: 447 LREARITEKLEKQQKIEQERKRRQKH---QEYLNSILQHAKDFREYHRSVTGKLQKLTKA 503
Query: 540 ITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIR 575
+ Y N RE+ +E RI +L A G R
Sbjct: 504 VATYHANTEREQKKENERIEKERMRRLMAEDEEGYR 539
Score = 42 (19.8 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 110 YRL-CKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKV 157
YRL +++ ++E+E++ G+ A K L L QR+ ++V
Sbjct: 372 YRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV 420
Score = 41 (19.5 bits), Expect = 2.2e-29, Sum P(4) = 2.2e-29
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 131 DPFVA---DAIANEKELALSEEQRKKFRKVKEED 161
D +VA + + K +++E++KK +K K E+
Sbjct: 558 DEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN 591
Score = 40 (19.1 bits), Expect = 1.0e-22, Sum P(5) = 1.0e-22
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 714 DGPDILVCDEAHMIKNTRAD 733
D D+ D H+I+N + D
Sbjct: 694 DSDDVSEVDARHIIENAKQD 713
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 182 (69.1 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 51/127 (40%), Positives = 66/127 (51%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL K L+F Q + ++E Y + +G + RL
Sbjct: 1079 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAY------------RGFKYLRL 1126
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T++ +R L++ FNEP L+STRAG LG+NL SA+ VII D WNP DLQ
Sbjct: 1127 DGTTKAEDRGMLLKTFNEP-GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQ 1185
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1186 AQDRAHR 1192
Score = 177 (67.4 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RR+ LTG+PLQN L E + +++F+ S
Sbjct: 878 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCS 937
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 938 TFEQWFNAPFAMTGEKVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVEAQLPEKVEY 994
Query: 837 VITVKLSPLQRRLYKRFLDLHG--FTNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S LQR LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 995 VIKCDMSALQRVLY-RHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 1053
Score = 126 (49.4 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 40/140 (28%), Positives = 65/140 (46%)
Query: 517 LMNSVTLDGDLSAGASIEVLGDAITGY--IVNVVREKGEEAVRIPSSISAKLKAHQVVGI 574
++ + D D G S + L + Y + + V E+ ++ + ++ LK +Q+ G+
Sbjct: 706 IIENAKQDVDDEYGVS-QALARGLQSYYAVAHAVTERVDKQSAL--MVNGVLKQYQIKGL 762
Query: 575 RFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 634
++ V + L ILA MGLGKT Q IA + M + LI+ P
Sbjct: 763 EWL----------VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRIN-GPFLIIVP 811
Query: 635 VNVLHNWKQEFMKWRPSELK 654
++ L NW EF KW PS +K
Sbjct: 812 LSTLSNWAYEFDKWAPSVVK 831
Score = 64 (27.6 bits), Expect = 1.0e-22, Sum P(5) = 1.0e-22
Identities = 26/96 (27%), Positives = 43/96 (44%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDA 539
L +A + E+ +++ IE+ER+ R K Q S L ++ + S ++ L A
Sbjct: 447 LREARITEKLEKQQKIEQERKRRQKH---QEYLNSILQHAKDFREYHRSVTGKLQKLTKA 503
Query: 540 ITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIR 575
+ Y N RE+ +E RI +L A G R
Sbjct: 504 VATYHANTEREQKKENERIEKERMRRLMAEDEEGYR 539
Score = 42 (19.8 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 110 YRL-CKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKV 157
YRL +++ ++E+E++ G+ A K L L QR+ ++V
Sbjct: 372 YRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV 420
Score = 41 (19.5 bits), Expect = 2.2e-29, Sum P(4) = 2.2e-29
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 131 DPFVA---DAIANEKELALSEEQRKKFRKVKEED 161
D +VA + + K +++E++KK +K K E+
Sbjct: 558 DEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN 591
Score = 40 (19.1 bits), Expect = 1.0e-22, Sum P(5) = 1.0e-22
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 714 DGPDILVCDEAHMIKNTRAD 733
D D+ D H+I+N + D
Sbjct: 694 DSDDVSEVDARHIIENAKQD 713
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 182 (69.1 bits), Expect = 1.9e-29, Sum P(4) = 1.9e-29
Identities = 51/127 (40%), Positives = 66/127 (51%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL K L+F Q + ++E Y + +G + RL
Sbjct: 1079 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAY------------RGFKYLRL 1126
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T++ +R L++ FNEP L+STRAG LG+NL SA+ VII D WNP DLQ
Sbjct: 1127 DGTTKAEDRGMLLKTFNEP-GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQ 1185
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1186 AQDRAHR 1192
Score = 177 (67.4 bits), Expect = 1.9e-29, Sum P(4) = 1.9e-29
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RR+ LTG+PLQN L E + +++F+ S
Sbjct: 878 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCS 937
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 938 TFEQWFNAPFAMTGEKVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVEAQLPEKVEY 994
Query: 837 VITVKLSPLQRRLYKRFLDLHG--FTNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S LQR LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 995 VIKCDMSALQRVLY-RHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 1053
Score = 126 (49.4 bits), Expect = 1.9e-29, Sum P(4) = 1.9e-29
Identities = 40/140 (28%), Positives = 65/140 (46%)
Query: 517 LMNSVTLDGDLSAGASIEVLGDAITGY--IVNVVREKGEEAVRIPSSISAKLKAHQVVGI 574
++ + D D G S + L + Y + + V E+ ++ + ++ LK +Q+ G+
Sbjct: 706 IIENAKQDVDDEYGVS-QALARGLQSYYAVAHAVTERVDKQSAL--MVNGVLKQYQIKGL 762
Query: 575 RFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 634
++ V + L ILA MGLGKT Q IA + M + LI+ P
Sbjct: 763 EWL----------VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRIN-GPFLIIVP 811
Query: 635 VNVLHNWKQEFMKWRPSELK 654
++ L NW EF KW PS +K
Sbjct: 812 LSTLSNWAYEFDKWAPSVVK 831
Score = 66 (28.3 bits), Expect = 7.0e-23, Sum P(5) = 7.0e-23
Identities = 27/96 (28%), Positives = 43/96 (44%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDA 539
L +A + E+ +++ IE+ER+ R K Q S L ++ + S I+ L A
Sbjct: 447 LREARITEKLEKQQKIEQERKRRQKH---QEYLNSILQHAKDFKEYHRSVTGKIQKLTKA 503
Query: 540 ITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIR 575
+ Y N RE+ +E RI +L A G R
Sbjct: 504 VATYHANTEREQKKENERIEKERMRRLMAEDEEGYR 539
Score = 42 (19.8 bits), Expect = 1.9e-29, Sum P(4) = 1.9e-29
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 110 YRL-CKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKV 157
YRL +++ ++E+E++ G+ A K L L QR+ ++V
Sbjct: 372 YRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV 420
Score = 41 (19.5 bits), Expect = 2.4e-29, Sum P(4) = 2.4e-29
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 131 DPFVA---DAIANEKELALSEEQRKKFRKVKEED 161
D +VA + + K +++E++KK +K K E+
Sbjct: 558 DEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN 591
Score = 40 (19.1 bits), Expect = 7.0e-23, Sum P(5) = 7.0e-23
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 714 DGPDILVCDEAHMIKNTRAD 733
D D+ D H+I+N + D
Sbjct: 694 DSDDVSEVDARHIIENAKQD 713
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 182 (69.1 bits), Expect = 2.0e-29, Sum P(4) = 2.0e-29
Identities = 51/127 (40%), Positives = 66/127 (51%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL K L+F Q + ++E Y + +G + RL
Sbjct: 1079 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAY------------RGFKYLRL 1126
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T++ +R L++ FNEP L+STRAG LG+NL SA+ VII D WNP DLQ
Sbjct: 1127 DGTTKAEDRGMLLKTFNEP-GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQ 1185
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1186 AQDRAHR 1192
Score = 177 (67.4 bits), Expect = 2.0e-29, Sum P(4) = 2.0e-29
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RR+ LTG+PLQN L E + +++F+ S
Sbjct: 878 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCS 937
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 938 TFEQWFNAPFAMTGEKVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVEAQLPEKVEY 994
Query: 837 VITVKLSPLQRRLYKRFLDLHG--FTNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S LQR LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 995 VIKCDMSALQRVLY-RHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 1053
Score = 126 (49.4 bits), Expect = 2.0e-29, Sum P(4) = 2.0e-29
Identities = 40/140 (28%), Positives = 65/140 (46%)
Query: 517 LMNSVTLDGDLSAGASIEVLGDAITGY--IVNVVREKGEEAVRIPSSISAKLKAHQVVGI 574
++ + D D G S + L + Y + + V E+ ++ + ++ LK +Q+ G+
Sbjct: 706 IIENAKQDVDDEYGVS-QALARGLQSYYAVAHAVTERVDKQSAL--MVNGVLKQYQIKGL 762
Query: 575 RFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 634
++ V + L ILA MGLGKT Q IA + M + LI+ P
Sbjct: 763 EWL----------VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRIN-GPFLIIVP 811
Query: 635 VNVLHNWKQEFMKWRPSELK 654
++ L NW EF KW PS +K
Sbjct: 812 LSTLSNWAYEFDKWAPSVVK 831
Score = 66 (28.3 bits), Expect = 7.8e-23, Sum P(5) = 7.8e-23
Identities = 27/96 (28%), Positives = 43/96 (44%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDA 539
L +A + E+ +++ IE+ER+ R K Q S L ++ + S I+ L A
Sbjct: 447 LREARITEKLEKQQKIEQERKRRQKH---QEYLNSILQHAKDFKEYHRSVTGKIQKLTKA 503
Query: 540 ITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIR 575
+ Y N RE+ +E RI +L A G R
Sbjct: 504 VATYHANTEREQKKENERIEKERMRRLMAEDEEGYR 539
Score = 42 (19.8 bits), Expect = 2.0e-29, Sum P(4) = 2.0e-29
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 110 YRL-CKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKV 157
YRL +++ ++E+E++ G+ A K L L QR+ ++V
Sbjct: 372 YRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV 420
Score = 41 (19.5 bits), Expect = 2.6e-29, Sum P(4) = 2.6e-29
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 131 DPFVA---DAIANEKELALSEEQRKKFRKVKEED 161
D +VA + + K +++E++KK +K K E+
Sbjct: 558 DEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN 591
Score = 40 (19.1 bits), Expect = 7.8e-23, Sum P(5) = 7.8e-23
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 714 DGPDILVCDEAHMIKNTRAD 733
D D+ D H+I+N + D
Sbjct: 694 DSDDVSEVDARHIIENAKQD 713
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 182 (69.1 bits), Expect = 2.2e-29, Sum P(4) = 2.2e-29
Identities = 51/127 (40%), Positives = 66/127 (51%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL K L+F Q + ++E Y + +G + RL
Sbjct: 1079 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAY------------RGFKYLRL 1126
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T++ +R L++ FNEP L+STRAG LG+NL SA+ VII D WNP DLQ
Sbjct: 1127 DGTTKAEDRGMLLKTFNEP-GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQ 1185
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1186 AQDRAHR 1192
Score = 177 (67.4 bits), Expect = 2.2e-29, Sum P(4) = 2.2e-29
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RR+ LTG+PLQN L E + +++F+ S
Sbjct: 878 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCS 937
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 938 TFEQWFNAPFAMTGEKVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVEAQLPEKVEY 994
Query: 837 VITVKLSPLQRRLYKRFLDLHG--FTNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S LQR LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 995 VIKCDMSALQRVLY-RHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 1053
Score = 126 (49.4 bits), Expect = 2.2e-29, Sum P(4) = 2.2e-29
Identities = 40/140 (28%), Positives = 65/140 (46%)
Query: 517 LMNSVTLDGDLSAGASIEVLGDAITGY--IVNVVREKGEEAVRIPSSISAKLKAHQVVGI 574
++ + D D G S + L + Y + + V E+ ++ + ++ LK +Q+ G+
Sbjct: 706 IIENAKQDVDDEYGVS-QALARGLQSYYAVAHAVTERVDKQSAL--MVNGVLKQYQIKGL 762
Query: 575 RFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 634
++ V + L ILA MGLGKT Q IA + M + LI+ P
Sbjct: 763 EWL----------VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRIN-GPFLIIVP 811
Query: 635 VNVLHNWKQEFMKWRPSELK 654
++ L NW EF KW PS +K
Sbjct: 812 LSTLSNWAYEFDKWAPSVVK 831
Score = 64 (27.6 bits), Expect = 5.8e-23, Sum P(4) = 5.8e-23
Identities = 26/96 (27%), Positives = 43/96 (44%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDA 539
L +A + E+ +++ IE+ER+ R K Q S L ++ + S ++ L A
Sbjct: 447 LREARITEKLEKQQKIEQERKRRQKH---QEYLNSILQHAKDFREYHRSVTGKLQKLTKA 503
Query: 540 ITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIR 575
+ Y N RE+ +E RI +L A G R
Sbjct: 504 VATYHANTEREQKKENERIEKERMRRLMAEDEEGYR 539
Score = 41 (19.5 bits), Expect = 2.2e-29, Sum P(4) = 2.2e-29
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 131 DPFVA---DAIANEKELALSEEQRKKFRKVKEED 161
D +VA + + K +++E++KK +K K E+
Sbjct: 558 DEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN 591
Score = 40 (19.1 bits), Expect = 5.8e-23, Sum P(4) = 5.8e-23
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 714 DGPDILVCDEAHMIKNTRAD 733
D D+ D H+I+N + D
Sbjct: 694 DSDDVSEVDARHIIENAKQD 713
>RGD|1311923 [details] [associations]
symbol:Chd3 "chromodomain helicase DNA binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISO]
[GO:0007051 "spindle organization" evidence=ISO] [GO:0016581 "NuRD
complex" evidence=ISO] [GO:0045111 "intermediate filament
cytoskeleton" evidence=ISO] [GO:0051297 "centrosome organization"
evidence=ISO] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326
IPI:IPI00369880 EMBL:AY903245 EMBL:AY903246 UniGene:Rn.232095
STRING:Q2KML1 UCSC:RGD:1311923 Genevestigator:Q2KML1 Uniprot:Q2KML1
Length = 1925
Score = 215 (80.7 bits), Expect = 2.3e-29, Sum P(3) = 2.3e-29
Identities = 98/362 (27%), Positives = 157/362 (43%)
Query: 534 EVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDK 593
E+ GD N K E R ++ L +Q+ G+ W S +
Sbjct: 660 EIQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLN--WLRF--------SWAQ 709
Query: 594 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 653
G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 710 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTK-GPFLVSAPLSTIINWEREFQMWAP--- 765
Query: 654 KPLRVFMLEDVSRDRRAELLA-KWRAKGGVFLIGYTAF---RNLSFGKHVKDRNMAREIC 709
K V D +D RA + ++ + G AF R HV +
Sbjct: 766 KFYVVTYTGD--KDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITI 823
Query: 710 HALQDGP---DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVD 766
G LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + +++
Sbjct: 824 DQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLN 883
Query: 767 FVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVV 826
F+ + F N + +E + + + ED +I ++ H L ++R+ +V
Sbjct: 884 FL------TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADVF 929
Query: 827 KKDLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWN 885
K ++P KT ++ V+LSP+Q++ YK L + N R ++ S L + N
Sbjct: 930 K-NMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV--SLLNIMMDLKKCCN 986
Query: 886 HP 887
HP
Sbjct: 987 HP 988
Score = 209 (78.6 bits), Expect = 2.3e-29, Sum P(3) = 2.3e-29
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1015 SGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY------------EGYKYERI 1062
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1063 DGGITGALRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQ 1121
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1122 AFSRAHR 1128
Score = 55 (24.4 bits), Expect = 2.3e-29, Sum P(3) = 2.3e-29
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 423
YC C + +++ C +C + C+ + A E + SC C
Sbjct: 338 YCEVCQQGGEIILCDTCPRAYHLVCLDPELDRA---PEGKWSCPHC 380
Score = 48 (22.0 bits), Expect = 3.5e-12, Sum P(3) = 3.5e-12
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 697 KHVKDRNMAREICHALQDGPDILVCD 722
K +D +M E C +DG ++L CD
Sbjct: 405 KEEEDDHM--EYCRVCKDGGELLCCD 428
Score = 46 (21.3 bits), Expect = 3.0e-27, Sum P(4) = 3.0e-27
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLK 432
YC C +L+ C +C + + C+ + + + W C C+ +LK
Sbjct: 414 YCRVCKDGGELLCCDACISSYHIHCLNPPLPD------IPNGEWLCPRCTCPVLK 462
Score = 43 (20.2 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 336 QDYCEVCQQGGEIILCD 352
Score = 37 (18.1 bits), Expect = 3.0e-27, Sum P(4) = 3.0e-27
Identities = 21/92 (22%), Positives = 37/92 (40%)
Query: 12 KLLEEGASGFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAAFGSKHWASVYL 71
K L+ G G +KK+ + G +EV + + ++ D E C G + L
Sbjct: 302 KKLKRGRPGRKKKKVLGCPTVTGEEEVD--GYETDHQ----DYCEVCQQGGE-----IIL 350
Query: 72 ASTPQQAAAMGLKFPGVDEVTDFSSNCPNMWK 103
T +A + P +D + +CP+ K
Sbjct: 351 CDTCPRAYHLVCLDPELDRAPEGKWSCPHCEK 382
Score = 37 (18.1 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1003 GKQGKLWKKGKDWYRLDG 1020
GK ++W + D++ L G
Sbjct: 1657 GKLNEIWHRRHDYWLLAG 1674
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 192 (72.6 bits), Expect = 2.4e-29, Sum P(4) = 2.4e-29
Identities = 48/126 (38%), Positives = 69/126 (54%)
Query: 960 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLD 1019
GK+ L +L G + L+F+Q LD++E +L+ G L+ RLD
Sbjct: 2043 GKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTY------HGHLY------LRLD 2090
Query: 1020 GRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQA 1079
G T +RQ L+ERFN +KR+ C ++STR+G +G+NL A+ V+ D WNPT D QA
Sbjct: 2091 GSTRVEQRQALMERFNA--DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQA 2148
Query: 1080 IYRAWR 1085
R R
Sbjct: 2149 QDRCHR 2154
Score = 189 (71.6 bits), Expect = 2.4e-29, Sum P(4) = 2.4e-29
Identities = 54/171 (31%), Positives = 85/171 (49%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
L+ DEA IKN ++ Q+L QRR+ LTG+PLQN+LME + ++ F+ S E
Sbjct: 750 LILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHRE 809
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F+ F NP+ G S + ++ + L++ L+ F+ R V+K +P K VI
Sbjct: 810 FKEWFSNPL-TGMIEGSQEYNEGLVKR----LHKVLRPFLLRRVKVDVEKQMPKKYEHVI 864
Query: 839 TVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGI 889
+LS QR LY F+ T + ++ S L ++ NHP +
Sbjct: 865 RCRLSKRQRCLYDDFM-AQTTTKETLATGHFM-SVINILMQLRKVCNHPNL 913
Score = 117 (46.2 bits), Expect = 2.4e-29, Sum P(4) = 2.4e-29
Identities = 38/135 (28%), Positives = 64/135 (47%)
Query: 558 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL-Y 616
IP + +L+ +Q +G+ ++ V +K L ILA MGLGKT Q I+ L +
Sbjct: 617 IPLLLRGQLREYQHIGLDWL----------VTMYEKKLNGILADEMGLGKTIQTISLLAH 666
Query: 617 TAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKW 676
A N G LI+ P +V+ NW+ E +W PS ++ ++R+ + W
Sbjct: 667 LACEKGNWGPH--LIIVPTSVMLNWEMELKRWCPS----FKILTYYGAQKERKLKRQG-W 719
Query: 677 RAKGGVFLIGYTAFR 691
K F + T+++
Sbjct: 720 -TKPNAFHVCITSYK 733
Score = 40 (19.1 bits), Expect = 2.4e-29, Sum P(4) = 2.4e-29
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 116 SGSVEE-IEDV-DGNSDDPFVA-DAIANEKELALSEEQRKKFRKVKEEDD 162
S S EE ED D +S++ + + + E E SEE + + + +EE+D
Sbjct: 503 SDSAEEQSEDEEDEHSEEEETSRSSESEESESEESEESQSQSQADEEEED 552
Score = 40 (19.1 bits), Expect = 3.2e-28, Sum P(5) = 3.2e-28
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 148 EEQRKKFRKVKEEDDANM 165
EEQR+K + + E+ A +
Sbjct: 174 EEQRQKEERARREEQAKL 191
Score = 39 (18.8 bits), Expect = 3.0e-29, Sum P(4) = 3.0e-29
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 116 SGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMD 166
SGS EE E+ + +D A E E A E+ + +E+ + D
Sbjct: 465 SGSSEEEEEDEVEADSSESEPEGAAEAEEAPHEDSSSQSDSAEEQSEDEED 515
Score = 37 (18.1 bits), Expect = 3.2e-28, Sum P(5) = 3.2e-28
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 291 SDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQS 328
S ++D +++ + ++HS E + ++ S +S
Sbjct: 500 SSQSDSAEEQSEDEEDEHSEEEETSRSSESEESESEES 537
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 233 (87.1 bits), Expect = 2.6e-29, Sum P(2) = 2.6e-29
Identities = 82/303 (27%), Positives = 140/303 (46%)
Query: 597 CILAHTMGLGKTFQVIAFLYTA-MRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKP 655
CILA MGLGKT Q I FLY ++ ++ G L++ P++ + NW++EF W +EL
Sbjct: 175 CILADEMGLGKTIQSITFLYEIYLKGIH-G--PFLVIAPLSTIPNWEREFRTW--TELNV 229
Query: 656 LRVFMLEDVSRDRRAELLAKW-RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD 714
+ V+ SR R +L + + G + G F + + M C L++
Sbjct: 230 V-VYHGSQASR-RTIQLYEMYFKDPQGRVIKGSYKFHAI-----ITTFEMILTDCPELRN 282
Query: 715 GP-DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFL 773
P +V DEAH +KN + LK + + ++ LTG+PLQN + E + ++ F+ G
Sbjct: 283 IPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPGRF 342
Query: 774 GSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPK 833
S F F + T E V Q+ + LK + R V+K+L PK
Sbjct: 343 PSETTFMQEFGDL--------KTEEQV----QKLQAI---LKPMMLRRLKEDVEKNLAPK 387
Query: 834 TVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLT 893
+I V+L+ +Q++ Y+ L+ + + + + L + NHP ++
Sbjct: 388 EETIIEVELTNIQKKYYRAILEKNFAFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGA 447
Query: 894 KDK 896
++K
Sbjct: 448 EEK 450
Score = 189 (71.6 bits), Expect = 2.6e-29, Sum P(2) = 2.6e-29
Identities = 50/133 (37%), Positives = 71/133 (53%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
+GK+VL+ +L G + L+FSQ + LD++E YL + P + R+
Sbjct: 475 AGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYP------------YERI 522
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DGR + RQ ++RF+ P + R L+ TRAG LGINL +A+ II D WNP DLQ
Sbjct: 523 DGRVRGNLRQAAIDRFSRPDSDRF-VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQ 581
Query: 1079 AIYRAWRCMDKQS 1091
A R R +S
Sbjct: 582 AQARCHRIGQSKS 594
Score = 41 (19.5 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 928 DFLQGKNDDGFFQKDWWNDLLHEHTYKEL 956
D+L N D FQ+D + L H K L
Sbjct: 900 DWLTTCNPDVLFQEDSYRKHLKHHCNKVL 928
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 233 (87.1 bits), Expect = 2.7e-29, Sum P(3) = 2.7e-29
Identities = 82/263 (31%), Positives = 123/263 (46%)
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT-PVNVLHNWKQEFMKWRP 650
+ G+ ILA MGLGKT Q IA T V G+ +V P++ L NW EF ++ P
Sbjct: 238 ENGINGILADEMGLGKTIQCIA---TIALMVERGVPGPFLVCGPLSTLPNWMSEFKRFTP 294
Query: 651 SELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICH 710
E+ PL ML ++ R +L+ K + G I SF ++DRN A + C
Sbjct: 295 -EI-PL---MLYHGAQQERRKLVRKIHGRQGSLKIHPVVIT--SFEIAMRDRN-ALQSCF 346
Query: 711 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 770
L+ DE H IKN + LK+ ++ LTG+PLQNNL E + +++F+
Sbjct: 347 W-----KYLIVDEGHRIKNMNCRLIRELKRFNADNKLLLTGTPLQNNLAELWSLLNFLLP 401
Query: 771 GFLGSSHEFRNRFQNPIENGQHTNSTSEDV--KIMNQRS-HILYEQLKGFVQRMDMNVVK 827
F + F I + T+ED+ K Q H+L++ L F+ R + V
Sbjct: 402 DVFDDLKSFESWFD--ITS---ITETAEDIIAKEKEQNILHMLHQILTPFLLRRLKSDVA 456
Query: 828 KDLPPKTVFVITVKLSPLQRRLY 850
++PPK V+ L+ Q Y
Sbjct: 457 LEVPPKREVVVYAPLAKKQETFY 479
Score = 174 (66.3 bits), Expect = 2.7e-29, Sum P(3) = 2.7e-29
Identities = 50/127 (39%), Positives = 67/127 (52%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK +LL +L G K L+FSQ LD++ Y + +G + RL
Sbjct: 598 SGKFLLLDRMLPELKKRGHKVLMFSQMTMMLDILMDYC------------YLRGFKFSRL 645
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG S+R++ + +FN + V L+STRAG LGINL +A+ VII D WNP DLQ
Sbjct: 646 DGSMSYSDREENMHQFNN--DPEVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQ 703
Query: 1079 AIYRAWR 1085
A R R
Sbjct: 704 AQDRCHR 710
Score = 57 (25.1 bits), Expect = 2.7e-29, Sum P(3) = 2.7e-29
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 488 EETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVT 522
EE KRK +EK+R+ LKS + Q + K S T
Sbjct: 91 EEQKRKEKLEKKREMMLKSAKGQNPADGKEEKSAT 125
>ASPGD|ASPL0000037473 [details] [associations]
symbol:AN2973 species:162425 "Emericella nidulans"
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0070870 "heterochromatin maintenance involved in chromatin
silencing" evidence=IEA] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0070869 "heterochromatin
assembly involved in chromatin silencing" evidence=IEA] [GO:0006348
"chromatin silencing at telomere" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031934 "mating-type region heterochromatin" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 EMBL:BN001306 EMBL:AACD01000051
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
RefSeq:XP_660577.1 ProteinModelPortal:Q5B907
EnsemblFungi:CADANIAT00010107 GeneID:2874181 KEGG:ani:AN2973.2
OMA:QQVGINW Uniprot:Q5B907
Length = 1107
Score = 251 (93.4 bits), Expect = 2.9e-29, Sum P(3) = 2.9e-29
Identities = 112/407 (27%), Positives = 172/407 (42%)
Query: 595 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTA-LIVTPVNVLHNWKQEFMKWRPSEL 653
L CILA MGLGKT QVIAFL G++ L+V P + + NW +EF K+ P+ L
Sbjct: 583 LSCILADDMGLGKTCQVIAFLAHLYEK---GIKGPHLVVVPSSTIENWLREFQKFCPT-L 638
Query: 654 KPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 713
+ + ++V R ++ R V + YT + H RNM + C
Sbjct: 639 SVMPYYADQNVRAQIREQIEGN-RDDINVVITTYTIAKG-KVDAHFL-RNM--DFCAC-- 691
Query: 714 DGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFL 773
V DE HM+K++ + + L +++ + R+ LTG+PLQNNL E ++ F+
Sbjct: 692 ------VYDEGHMLKSSTSVLYEKLIRIRARFRLLLTGTPLQNNLQELASLLGFILPKVF 745
Query: 774 GSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPK 833
E ++ Q N T S + QR LK FV R + V DLP K
Sbjct: 746 ---QERKDDLQYIFSNKAKTVDESHSALLSAQRIERAKSMLKPFVLRRKKHQVI-DLPAK 801
Query: 834 TVFVITVKLSPLQRRLYKRFL-DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQL 892
V +++ QR +Y+ ++ DR + +K L Q HP L
Sbjct: 802 ISRVEYCEMNAAQREIYEHEKNEVKKLLEDRAAGKKTGNKSANILMKLRQAAIHP----L 857
Query: 893 TKDKGYPSRXXXXXXXXXXNMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDL-LHEH 951
+ Y + + P+ + + LQ ND Q N L +
Sbjct: 858 LHRRHYNDKILTKMSKAC--LQEEKWAESDPKLIYEDLQPYNDFECHQLCVENPKSLGKF 915
Query: 952 TYKELDY--SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYL 996
K ++ SGK+ L ++L GD+ LVFSQ +D++E L
Sbjct: 916 ALKNNEWMDSGKVDKLCELLRRFKENGDRVLVFSQFRLAMDILEVVL 962
Score = 179 (68.1 bits), Expect = 2.9e-29, Sum P(3) = 2.9e-29
Identities = 49/127 (38%), Positives = 69/127 (54%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK+ L ++L GD+ LVFSQ +D++E L + + RL
Sbjct: 925 SGKVDKLCELLRRFKENGDRVLVFSQFRLAMDILEVVLEN------------QHLKFVRL 972
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T +RQ +++ F+E N + L+ST+AG GINL AN+VII D S+NP D+Q
Sbjct: 973 DGTTSVEDRQSIMDTFHE--NTDIPVFLLSTKAGGAGINLACANKVIIFDSSFNPQEDVQ 1030
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1031 AENRAHR 1037
Score = 125 (49.1 bits), Expect = 5.7e-16, Sum P(3) = 5.7e-16
Identities = 34/88 (38%), Positives = 49/88 (55%)
Query: 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL 624
K+K +Q+VGI W +++ + L CILA MGLGKT QVIAFL
Sbjct: 563 KMKNYQIVGIN--WLSLLF--------ENELSCILADDMGLGKTCQVIAFLAHLYEK--- 609
Query: 625 GLRTA-LIVTPVNVLHNWKQEFMKWRPS 651
G++ L+V P + + NW +EF K+ P+
Sbjct: 610 GIKGPHLVVVPSSTIENWLREFQKFCPT 637
Score = 61 (26.5 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 27/101 (26%), Positives = 46/101 (45%)
Query: 496 IEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEA 555
+ K QER LQ FS+K+K T+D SA S + + A + V+R K +
Sbjct: 741 LPKVFQERKDDLQYIFSNKAK-----TVDESHSALLSAQRIERAKSMLKPFVLRRKKHQV 795
Query: 556 VRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLG 596
+ +P+ IS R ++E+ ++K+ D+ G
Sbjct: 796 IDLPAKISRVEYCEMNAAQREIYEHEKNEVKKLLE-DRAAG 835
Score = 38 (18.4 bits), Expect = 2.9e-29, Sum P(3) = 2.9e-29
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 212 SNKKTDDGDMPGNNNEVALQNLETGVLESSVKERS 246
S +D D PG+ + A + G++ +K ++
Sbjct: 532 SQPSDEDSDGPGSRSRKARFISQPGIMAEDLKMKN 566
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 192 (72.6 bits), Expect = 3.1e-29, Sum P(4) = 3.1e-29
Identities = 48/126 (38%), Positives = 69/126 (54%)
Query: 960 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLD 1019
GK+ L +L G + L+F+Q LD++E +L+ G L+ RLD
Sbjct: 2054 GKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTY------HGHLY------LRLD 2101
Query: 1020 GRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQA 1079
G T +RQ L+ERFN +KR+ C ++STR+G +G+NL A+ V+ D WNPT D QA
Sbjct: 2102 GSTRVEQRQALMERFNA--DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQA 2159
Query: 1080 IYRAWR 1085
R R
Sbjct: 2160 QDRCHR 2165
Score = 189 (71.6 bits), Expect = 3.1e-29, Sum P(4) = 3.1e-29
Identities = 54/171 (31%), Positives = 85/171 (49%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
L+ DEA IKN ++ Q+L QRR+ LTG+PLQN+LME + ++ F+ S E
Sbjct: 751 LILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHRE 810
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F+ F NP+ G S + ++ + L++ L+ F+ R V+K +P K VI
Sbjct: 811 FKEWFSNPL-TGMIEGSQEYNEGLVKR----LHKVLRPFLLRRVKVDVEKQMPKKYEHVI 865
Query: 839 TVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGI 889
+LS QR LY F+ T + ++ S L ++ NHP +
Sbjct: 866 RCRLSKRQRCLYDDFM-AQTTTKETLATGHFM-SVINILMQLRKVCNHPNL 914
Score = 117 (46.2 bits), Expect = 3.1e-29, Sum P(4) = 3.1e-29
Identities = 38/135 (28%), Positives = 64/135 (47%)
Query: 558 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL-Y 616
IP + +L+ +Q +G+ ++ V +K L ILA MGLGKT Q I+ L +
Sbjct: 618 IPLLLRGQLREYQHIGLDWL----------VTMYEKKLNGILADEMGLGKTIQTISLLAH 667
Query: 617 TAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKW 676
A N G LI+ P +V+ NW+ E +W PS ++ ++R+ + W
Sbjct: 668 LACEKGNWGPH--LIIVPTSVMLNWEMELKRWCPS----FKILTYYGAQKERKLKRQG-W 720
Query: 677 RAKGGVFLIGYTAFR 691
K F + T+++
Sbjct: 721 -TKPNAFHVCITSYK 734
Score = 40 (19.1 bits), Expect = 2.0e-28, Sum P(5) = 2.0e-28
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 148 EEQRKKFRKVKEEDDANM 165
EEQR+K + + E+ A +
Sbjct: 174 EEQRQKEERARREEQAKL 191
Score = 39 (18.8 bits), Expect = 3.1e-29, Sum P(4) = 3.1e-29
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 121 EIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDD 162
E ED + + ++ + + E E SEE + + + +EE++
Sbjct: 511 EDEDEEHSEEEETSESSESEESESEESEESQSQSQADEEEEE 552
Score = 39 (18.8 bits), Expect = 2.0e-28, Sum P(5) = 2.0e-28
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 291 SDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQS 328
S ++D +++ + E+HS E + ++ S +S
Sbjct: 500 SSQSDSAEEQSEDEDEEHSEEEETSESSESEESESEES 537
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 173 (66.0 bits), Expect = 3.3e-29, Sum P(5) = 3.3e-29
Identities = 49/127 (38%), Positives = 67/127 (52%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL + L+F Q + ++E Y G + L+ RL
Sbjct: 1051 SGKFELLDRILPKLKATNHRVLLFCQMTSLMTILEDYF------GYRNFLY------LRL 1098
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T+S +R L+++FNE + L+STRAG LG+NL +A+ V+I D WNP DLQ
Sbjct: 1099 DGTTKSEDRAMLLKKFNEE-GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQ 1157
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1158 AQDRAHR 1164
Score = 171 (65.3 bits), Expect = 3.3e-29, Sum P(5) = 3.3e-29
Identities = 52/180 (28%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RR+ LTG+PLQN L E + +++F+ S
Sbjct: 850 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCS 909
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 910 TFEQWFNAPFAMTGERVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVESQLPEKVEY 966
Query: 837 VITVKLSPLQRRLYKRFLDLHGF--TNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S +Q+ LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 967 VIKCDMSAIQKVLY-RHMQGKGILLTDGSEKDKKGKGGAKTLMNTIMQLKKICNHPYMFQ 1025
Score = 115 (45.5 bits), Expect = 3.3e-29, Sum P(5) = 3.3e-29
Identities = 42/138 (30%), Positives = 62/138 (44%)
Query: 562 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 621
I+ LK +Q+ G+ +M V + L ILA MGLGKT Q I + M
Sbjct: 722 INGTLKQYQIQGLEWM----------VSLYNNNLNGILADEMGLGKTIQTIGLITYLMEL 771
Query: 622 VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGG 681
L LI+ P++ L NW E KW PS +K + RR+ L+ + R+ G
Sbjct: 772 KRLN-GPYLIIVPLSTLSNWVYELDKWAPSIVK----IAYKGTPSMRRS-LVPQLRS--G 823
Query: 682 VFLIGYTAFRNLSFGKHV 699
F + T + + KH+
Sbjct: 824 KFNVLITTYEYIIKDKHI 841
Score = 67 (28.6 bits), Expect = 3.3e-29, Sum P(5) = 3.3e-29
Identities = 27/96 (28%), Positives = 43/96 (44%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDA 539
L +A + E+ +++ IE+ER+ R K Q S L ++ + S I+ L A
Sbjct: 426 LREARMTEKLEKQQKIEQERKRRQKH---QEYLNSILQHAKDFKEYHRSISGKIQKLSKA 482
Query: 540 ITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIR 575
I + N RE+ +E RI +L A G R
Sbjct: 483 IATWHTNTEREQKKETERIEKERMRRLMAEDEEGYR 518
Score = 43 (20.2 bits), Expect = 3.3e-29, Sum P(5) = 3.3e-29
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 110 YRL-CKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRK 152
YRL +++ ++E+E++ G+ A K L L QR+
Sbjct: 351 YRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQ 394
Score = 40 (19.1 bits), Expect = 1.2e-26, Sum P(4) = 1.2e-26
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 131 DPFVADA--IANEKELALSEEQRKKFRKVKEED 161
D +VA+ + E + A + +++KK RK K+++
Sbjct: 537 DEYVANLTELVYEHKAAQAAKEKKKKRKKKKKE 569
Score = 38 (18.4 bits), Expect = 1.9e-26, Sum P(4) = 1.9e-26
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 110 YRLCKVSGSVEEIEDVDGNSDDPFVADAIANEKEL 144
Y + S S E D + D+ V+ A + EK++
Sbjct: 629 YEVAPRSDSEESGSDFEEEDDEEVVSRAESEEKKV 663
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 232 (86.7 bits), Expect = 4.1e-29, Sum P(3) = 4.1e-29
Identities = 77/259 (29%), Positives = 123/259 (47%)
Query: 598 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLR 657
ILA MGLGKT Q I+FL ++ L+V P++ + NW++EF KW P+ +
Sbjct: 777 ILADEMGLGKTIQTISFLSYLFNEQDIK-GPFLVVVPLSTIENWQREFAKWAPA--MNVI 833
Query: 658 VFMLEDVSRD--RRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 715
V+ SRD R E R G + + ++ +KD+N I
Sbjct: 834 VYTGTGQSRDIIRLYEFYTTNRL--GKKKLNFNVLLT-TYDFILKDKNTLGTIKW----- 885
Query: 716 PDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGS 775
+ L DEAH +KN+ + + LK R+ +TG+PLQN+L E + +++F+ S
Sbjct: 886 -EFLAVDEAHRLKNSESVLHEVLKLYNTTNRLLVTGTPLQNSLKELWNLLNFLMPNKFTS 944
Query: 776 SHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV 835
+F++++ + EN Q L+ LK + R V+K LPPKT
Sbjct: 945 LKDFQDQYSDLKENDQIAQ---------------LHSVLKPHLLRRIKKDVEKSLPPKTE 989
Query: 836 FVITVKLSPLQRRLYKRFL 854
++ V LS +Q++ YK L
Sbjct: 990 RILRVDLSNVQKKYYKWIL 1008
Score = 199 (75.1 bits), Expect = 4.1e-29, Sum P(3) = 4.1e-29
Identities = 52/131 (39%), Positives = 74/131 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK+VLL +L G + L+FSQ + LD++ YL +G+ ++ + RL
Sbjct: 1064 SGKLVLLDKLLIRLKETGHRVLIFSQMVRMLDILADYL--------KGRSFQ----FQRL 1111
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG +R + ++RFN ++ C L+ST+AG LGINL +A+ VII D WNP DLQ
Sbjct: 1112 DGSMSREKRSQAMDRFNA-VDSPDFCFLLSTKAGGLGINLSTADTVIIFDSDWNPQNDLQ 1170
Query: 1079 AIYRAWRCMDK 1089
A RA R K
Sbjct: 1171 AEARAHRIGQK 1181
Score = 45 (20.9 bits), Expect = 4.1e-29, Sum P(3) = 4.1e-29
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 120 EEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEED 161
E ED + + +A+E E L +KK VK+ D
Sbjct: 239 ESQEDTPNKQRNKVLTQQLASESEEELQPVNKKKSTMVKKVD 280
>FB|FBgn0262519 [details] [associations]
symbol:Mi-2 species:7227 "Drosophila melanogaster"
[GO:0016887 "ATPase activity" evidence=IDA;NAS] [GO:0005634
"nucleus" evidence=ISS;IDA;NAS] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0016581 "NuRD complex" evidence=ISS;TAS]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS;IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0005700 "polytene chromosome"
evidence=IDA] [GO:0042766 "nucleosome mobilization" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007517 "muscle
organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0031491 "nucleosome binding"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 EMBL:AE014296 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0000122
GO:GO:0048813 GO:GO:0007517 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0005700 GO:GO:0042766 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF119716 EMBL:AY113368 RefSeq:NP_001163476.1
RefSeq:NP_649154.2 UniGene:Dm.28317 ProteinModelPortal:O97159
SMR:O97159 DIP:DIP-22862N IntAct:O97159 MINT:MINT-864813
STRING:O97159 PaxDb:O97159 EnsemblMetazoa:FBtr0074919
EnsemblMetazoa:FBtr0302046 GeneID:40170 KEGG:dme:Dmel_CG8103
CTD:40170 FlyBase:FBgn0262519 InParanoid:O97159 OrthoDB:EOG4T76J4
ChiTaRS:Mi-2 GenomeRNAi:40170 NextBio:817384 Bgee:O97159
GermOnline:CG8103 Uniprot:O97159
Length = 1982
Score = 214 (80.4 bits), Expect = 4.2e-29, Sum P(3) = 4.2e-29
Identities = 78/277 (28%), Positives = 128/277 (46%)
Query: 582 IQSIRKVK-SGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHN 640
I+ I ++ S +G+ ILA MGLGKT Q + FLY+ + + L+ P++ L N
Sbjct: 735 IEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCR-GPFLVAVPLSTLVN 793
Query: 641 WKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGG--VFLIGYTAFR-NLSFGK 697
W++EF W P + + + R EL + A G V + T ++ N+
Sbjct: 794 WEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRTTQYKFNVLLTS 853
Query: 698 HVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNN 757
+ + C D +LV DEAH +K+ ++ + L ++ LTG+PLQNN
Sbjct: 854 Y--ELISMDAACLGSIDWA-VLVVDEAHRLKSNQSKFFRILNSYTIAYKLLLTGTPLQNN 910
Query: 758 LMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGF 817
L E + +++F+ F+ F + S E VK R H E L
Sbjct: 911 LEELFHLLNFLSRDKFNDLQAFQGEFADV--------SKEEQVK----RLH---EMLGPH 955
Query: 818 VQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFL 854
+ R V K++P K+ F++ V+LS +Q++ YK L
Sbjct: 956 MLRRLKTDVLKNMPSKSEFIVRVELSAMQKKFYKFIL 992
Score = 195 (73.7 bits), Expect = 4.2e-29, Sum P(3) = 4.2e-29
Identities = 51/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
+GK+VLL +L + L+FSQ LD++E +L G+Q K + R+
Sbjct: 1051 AGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLE-----GEQYK-------YERI 1098
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG + RQ+ ++RFN P ++ L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1099 DGGITGTLRQEAIDRFNAPGAQQF-VFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1157
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1158 AFSRAHR 1164
Score = 68 (29.0 bits), Expect = 4.2e-29, Sum P(3) = 4.2e-29
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 370 KDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC--CCCS 427
+D D + +C C +L+ C SC + + T C+ + D + W+C C C
Sbjct: 431 EDDDEHQEFCRVCKDGGELLCCDSCPSAYHTFCLNPPL------DTIPDGDWRCPRCSCP 484
Query: 428 P 428
P
Sbjct: 485 P 485
Score = 57 (25.1 bits), Expect = 5.8e-28, Sum P(3) = 5.8e-28
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 423
YC C + +++ C +C + C++ + E E + SC C
Sbjct: 379 YCEVCQQGGEIILCDTCPRAYHLVCLEPELDEP---PEGKWSCPHC 421
Score = 49 (22.3 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 700 KDRNMAREICHALQDGPDILVCD 722
+D + +E C +DG ++L CD
Sbjct: 431 EDDDEHQEFCRVCKDGGELLCCD 453
Score = 43 (20.2 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 377 QDYCEVCQQGGEIILCD 393
Score = 42 (19.8 bits), Expect = 2.2e-13, Sum P(3) = 2.2e-13
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 1002 PGKQGKLWKKGKDWYRLDG 1020
PG++ ++W + D++ L G
Sbjct: 1752 PGREYEIWHRRHDYWLLAG 1770
>UNIPROTKB|F5GWX5 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AC006064
IPI:IPI00000846 HGNC:HGNC:1919 ChiTaRS:CHD4
ProteinModelPortal:F5GWX5 SMR:F5GWX5 PRIDE:F5GWX5
Ensembl:ENST00000544040 UCSC:uc001qpn.3 ArrayExpress:F5GWX5
Bgee:F5GWX5 Uniprot:F5GWX5
Length = 1905
Score = 210 (79.0 bits), Expect = 4.3e-29, Sum P(4) = 4.3e-29
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q FLY+ + + L+ P++ + NW++EF W P
Sbjct: 736 QGTDTILADEMGLGKTVQTAVFLYSLYKEGH-SKGPFLVSAPLSTIINWEREFEMWAPDM 794
Query: 653 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 711
V + + R E + A +GG ++ F + + I A
Sbjct: 795 YVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELIT-IDMA 853
Query: 712 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 769
+ D L+ DEAH +KN ++ + L Q ++ LTG+PLQNNL E + +++F+
Sbjct: 854 ILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFL- 912
Query: 770 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQL-KGFVQRMDMNVVKK 828
+ F N + +E + + ED +I L++ L ++R+ +V K
Sbjct: 913 -----TPERFHN-LEGFLE--EFADIAKED-QIKK-----LHDMLGPHMLRRLKADVFK- 957
Query: 829 DLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
++P KT ++ V+LSP+Q++ YK L + N R ++ S L + NHP
Sbjct: 958 NMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV--SLLNVVMDLKKCCNHP 1015
Score = 207 (77.9 bits), Expect = 4.3e-29, Sum P(4) = 4.3e-29
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1042 SGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH------------EGYKYERI 1089
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1090 DGGITGNMRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1148
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1149 AFSRAHR 1155
Score = 56 (24.8 bits), Expect = 4.3e-29, Sum P(4) = 4.3e-29
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 423
YC C + +++ C +C + C+ ++ +A E + SC C
Sbjct: 365 YCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKA---PEGKWSCPHC 407
Score = 52 (23.4 bits), Expect = 4.3e-29, Sum P(4) = 4.3e-29
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 114 KVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEE 160
K S S ++ DV+ + DD + ++ + S RKK R K++
Sbjct: 299 KRSSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRSRKKLRTTKKK 345
Score = 47 (21.6 bits), Expect = 1.4e-12, Sum P(4) = 1.4e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 701 DRNMAREICHALQDGPDILVCD 722
D +M E C +DG ++L CD
Sbjct: 439 DHHM--EFCRVCKDGGELLCCD 458
Score = 45 (20.9 bits), Expect = 2.3e-28, Sum P(4) = 2.3e-28
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 119 VEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFR-KVKEEDDANMD 166
VEE E+V SD +K+ L ++ KK + K KEE++ D
Sbjct: 86 VEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDD 134
Score = 43 (20.2 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 920 GEKPRNMNDFLQGKN 934
GE P+++ND Q KN
Sbjct: 1670 GETPKDLNDEKQKKN 1684
Score = 43 (20.2 bits), Expect = 3.5e-11, Sum P(3) = 3.5e-11
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 363 QDYCEVCQQGGEIILCD 379
Score = 37 (18.1 bits), Expect = 1.5e-27, Sum P(4) = 1.5e-27
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 116 SGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKE 159
+GS EE D N+ P + E LSE + K +K K+
Sbjct: 13 AGSEEEDMDALLNNSLPPPHPENEEDPEEDLSETETPKLKKKKK 56
Score = 37 (18.1 bits), Expect = 1.3e-25, Sum P(4) = 1.3e-25
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 487 GEETKRKIAIEKERQERLK 505
G++ K+K+ +KE++ + K
Sbjct: 106 GKKKKKKLGPKKEKKSKSK 124
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 178 (67.7 bits), Expect = 4.3e-29, Sum P(4) = 4.3e-29
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RRI LTG+PLQN L E + +++F+ S
Sbjct: 855 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCS 914
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 915 TFEQWFNAPFAMTGERVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVESQLPEKVEY 971
Query: 837 VITVKLSPLQRRLYKRFLDLHGF--TNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S LQ+ LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 972 VIKCDMSALQKILY-RHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ 1030
Score = 173 (66.0 bits), Expect = 4.3e-29, Sum P(4) = 4.3e-29
Identities = 49/127 (38%), Positives = 68/127 (53%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL + L+F Q + ++E Y + + L+ RL
Sbjct: 1056 SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAF------RNFLY------LRL 1103
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T+S +R L+++FNEP + L+STRAG LG+NL +A+ V+I D WNP DLQ
Sbjct: 1104 DGTTKSEDRAALLKKFNEP-GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQ 1162
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1163 AQDRAHR 1169
Score = 129 (50.5 bits), Expect = 4.3e-29, Sum P(4) = 4.3e-29
Identities = 45/176 (25%), Positives = 77/176 (43%)
Query: 483 DAELGEETKRKIAIEKERQERL----KSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGD 538
+++ EE + + + +E +E++ S +V +++ + D D G
Sbjct: 646 ESDYEEEDEEEESSRQETEEKILLDPNSKEVSEKDARQIIETAKQDVDDEYSMQYSARGS 705
Query: 539 AITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCI 598
+ + + E+ E+ + I+ LK +Q+ G+ +M V + L I
Sbjct: 706 QSYYTVAHAISERVEKQSAL--LINGTLKHYQLQGLEWM----------VSLYNNNLNGI 753
Query: 599 LAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELK 654
LA MG GKT Q IA + M L LI+ P++ L NW EF KW PS +K
Sbjct: 754 LADEMGPGKTIQTIALITYLMEHKGLN-GPYLIIVPLSTLSNWTYEFDKWAPSAVK 808
Score = 67 (28.6 bits), Expect = 9.3e-23, Sum P(4) = 9.3e-23
Identities = 26/96 (27%), Positives = 43/96 (44%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDA 539
L +A + E+ +++ IE+ER+ R K Q S L ++ + S I+ L A
Sbjct: 430 LREARMTEKLEKQQKIEQERKRRQKH---QEYLNSILQHAKDFKEYHRSVAGKIQKLSKA 486
Query: 540 ITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIR 575
+ + N RE+ +E RI +L A G R
Sbjct: 487 VATWHANTEREQKKETERIEKERMRRLMAEDEEGYR 522
Score = 43 (20.2 bits), Expect = 4.3e-29, Sum P(4) = 4.3e-29
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 110 YRL-CKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKV 157
YRL +++ ++E+E + G+ A K L L QR+ ++V
Sbjct: 355 YRLQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQLRQEV 403
>UNIPROTKB|E2RTI2 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:AAEX03003635
EMBL:AAEX03003636 Ensembl:ENSCAFT00000026729 Uniprot:E2RTI2
Length = 1998
Score = 213 (80.0 bits), Expect = 4.4e-29, Sum P(3) = 4.4e-29
Identities = 86/303 (28%), Positives = 139/303 (45%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 751 QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTK-GPFLVSAPLSTIINWEREFQMWAP-- 807
Query: 653 LKPLRVFMLEDVSRDRRAELLA-KWRAKGGVFLIGYTAF---RNLSFGKHVKDRNMAREI 708
K V D +D RA + ++ + G AF R HV +
Sbjct: 808 -KFYVVTYTGD--KDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELIT 864
Query: 709 CHALQDGP---DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMV 765
G LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + ++
Sbjct: 865 IDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLL 924
Query: 766 DFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 825
+F+ + F N + +E + + + ED +I ++ H L ++R+ +V
Sbjct: 925 NFL------TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADV 970
Query: 826 VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIW 884
K ++P KT ++ V+LSP+Q++ YK L + N R ++ S L +
Sbjct: 971 FK-NMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV--SLLNIMMDLKKCC 1027
Query: 885 NHP 887
NHP
Sbjct: 1028 NHP 1030
Score = 209 (78.6 bits), Expect = 4.4e-29, Sum P(3) = 4.4e-29
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1057 SGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY------------EGYKYERI 1104
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1105 DGGITGALRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQ 1163
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1164 AFSRAHR 1170
Score = 55 (24.4 bits), Expect = 4.4e-29, Sum P(3) = 4.4e-29
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 423
YC C + +++ C +C + C+ + A E + SC C
Sbjct: 380 YCEVCQQGGEIILCDTCPRAYHLVCLDPELDRA---PEGKWSCPHC 422
Score = 48 (22.0 bits), Expect = 3.9e-12, Sum P(3) = 3.9e-12
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 697 KHVKDRNMAREICHALQDGPDILVCD 722
K +D +M E C +DG ++L CD
Sbjct: 447 KEEEDDHM--EYCRVCKDGGELLCCD 470
Score = 46 (21.3 bits), Expect = 3.7e-28, Sum P(3) = 3.7e-28
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLK 432
YC C +L+ C +C + + C+ + + + W C C+ +LK
Sbjct: 456 YCRVCKDGGELLCCDACISSYHIHCLNPPLPD------IPNGEWLCPRCTCPVLK 504
Score = 43 (20.2 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 378 QDYCEVCQQGGEIILCD 394
Score = 40 (19.1 bits), Expect = 1.6e-27, Sum P(3) = 1.6e-27
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 98 CPNM-WKFRSIITYRLCKVSGSVEEIEDVDGNSDDP 132
CP + + + I+ +R + SV + DGN D P
Sbjct: 500 CPVLKGRVQKILHWRWGEPPVSVPAPQQADGNPDAP 535
Score = 37 (18.1 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1003 GKQGKLWKKGKDWYRLDG 1020
GK ++W + D++ L G
Sbjct: 1732 GKLNEIWHRRHDYWLLAG 1749
>UNIPROTKB|Q12873 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008270
"zinc ion binding" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007051 "spindle organization" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0051297 "centrosome organization" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0016581 "NuRD complex" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR001841
InterPro:IPR009071 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
EMBL:CH471108 GO:GO:0005730 GO:GO:0051297 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 Gene3D:1.10.30.10 GO:GO:0045111 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003
InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007051 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 EMBL:U91543 EMBL:AF006515 EMBL:U08379 IPI:IPI00373870
IPI:IPI00411592 RefSeq:NP_001005271.2 RefSeq:NP_001005273.1
RefSeq:NP_005843.2 UniGene:Hs.25601 ProteinModelPortal:Q12873
SMR:Q12873 DIP:DIP-32496N IntAct:Q12873 MINT:MINT-1185641
STRING:Q12873 PhosphoSite:Q12873 DMDM:88911273 PaxDb:Q12873
PRIDE:Q12873 Ensembl:ENST00000330494 Ensembl:ENST00000358181
GeneID:1107 KEGG:hsa:1107 UCSC:uc002gje.2 UCSC:uc002gjf.2
GeneCards:GC17P007788 H-InvDB:HIX0013516 HGNC:HGNC:1918
HPA:HPA043368 MIM:602120 neXtProt:NX_Q12873 PharmGKB:PA26454
HOVERGEN:HBG005326 KO:K11642 PhylomeDB:Q12873 ChiTaRS:CHD3
GenomeRNAi:1107 NextBio:4590 ArrayExpress:Q12873 Bgee:Q12873
CleanEx:HS_CHD3 Genevestigator:Q12873 GermOnline:ENSG00000170004
Uniprot:Q12873
Length = 2000
Score = 213 (80.0 bits), Expect = 4.4e-29, Sum P(3) = 4.4e-29
Identities = 86/303 (28%), Positives = 139/303 (45%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 753 QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTK-GPFLVSAPLSTIINWEREFQMWAP-- 809
Query: 653 LKPLRVFMLEDVSRDRRAELLA-KWRAKGGVFLIGYTAF---RNLSFGKHVKDRNMAREI 708
K V D +D RA + ++ + G AF R HV +
Sbjct: 810 -KFYVVTYTGD--KDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELIT 866
Query: 709 CHALQDGP---DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMV 765
G LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + ++
Sbjct: 867 IDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLL 926
Query: 766 DFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 825
+F+ + F N + +E + + + ED +I ++ H L ++R+ +V
Sbjct: 927 NFL------TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADV 972
Query: 826 VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIW 884
K ++P KT ++ V+LSP+Q++ YK L + N R ++ S L +
Sbjct: 973 FK-NMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV--SLLNIMMDLKKCC 1029
Query: 885 NHP 887
NHP
Sbjct: 1030 NHP 1032
Score = 209 (78.6 bits), Expect = 4.4e-29, Sum P(3) = 4.4e-29
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1059 SGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY------------EGYKYERI 1106
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1107 DGGITGALRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQ 1165
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1166 AFSRAHR 1172
Score = 55 (24.4 bits), Expect = 4.4e-29, Sum P(3) = 4.4e-29
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 423
YC C + +++ C +C + C+ + A E + SC C
Sbjct: 381 YCEVCQQGGEIILCDTCPRAYHLVCLDPELDRA---PEGKWSCPHC 423
Score = 48 (22.0 bits), Expect = 3.9e-12, Sum P(3) = 3.9e-12
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 697 KHVKDRNMAREICHALQDGPDILVCD 722
K +D +M E C +DG ++L CD
Sbjct: 449 KEEEDDHM--EYCRVCKDGGELLCCD 472
Score = 46 (21.3 bits), Expect = 3.7e-28, Sum P(3) = 3.7e-28
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLK 432
YC C +L+ C +C + + C+ + + + W C C+ +LK
Sbjct: 458 YCRVCKDGGELLCCDACISSYHIHCLNPPLPD------IPNGEWLCPRCTCPVLK 506
Score = 43 (20.2 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 379 QDYCEVCQQGGEIILCD 395
Score = 37 (18.1 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1003 GKQGKLWKKGKDWYRLDG 1020
GK ++W + D++ L G
Sbjct: 1734 GKLNEIWHRRHDYWLLAG 1751
>UNIPROTKB|E2RHA0 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 EMBL:AAEX03015287 RefSeq:XP_867754.2
Ensembl:ENSCAFT00000023774 GeneID:477714 KEGG:cfa:477714
Uniprot:E2RHA0
Length = 1912
Score = 210 (79.0 bits), Expect = 4.4e-29, Sum P(4) = 4.4e-29
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q FLY+ + + L+ P++ + NW++EF W P
Sbjct: 743 QGTDTILADEMGLGKTVQTAVFLYSLYKEGH-SKGPFLVSAPLSTIINWEREFEMWAPDM 801
Query: 653 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 711
V + + R E + A +GG ++ F + + I A
Sbjct: 802 YVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELIT-IDMA 860
Query: 712 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 769
+ D L+ DEAH +KN ++ + L Q ++ LTG+PLQNNL E + +++F+
Sbjct: 861 ILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFL- 919
Query: 770 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQL-KGFVQRMDMNVVKK 828
+ F N + +E + + ED +I L++ L ++R+ +V K
Sbjct: 920 -----TPERFHN-LEGFLE--EFADIAKED-QIKK-----LHDMLGPHMLRRLKADVFK- 964
Query: 829 DLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
++P KT ++ V+LSP+Q++ YK L + N R ++ S L + NHP
Sbjct: 965 NMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV--SLLNVVMDLKKCCNHP 1022
Score = 207 (77.9 bits), Expect = 4.4e-29, Sum P(4) = 4.4e-29
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1049 SGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH------------EGYKYERI 1096
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1097 DGGITGNMRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1155
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1156 AFSRAHR 1162
Score = 56 (24.8 bits), Expect = 4.4e-29, Sum P(4) = 4.4e-29
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 423
YC C + +++ C +C + C+ ++ +A E + SC C
Sbjct: 372 YCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKA---PEGKWSCPHC 414
Score = 52 (23.4 bits), Expect = 4.4e-29, Sum P(4) = 4.4e-29
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 114 KVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEE 160
K S S ++ DV+ + DD + ++ + S RKK R K++
Sbjct: 306 KRSSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRSRKKLRTTKKK 352
Score = 47 (21.6 bits), Expect = 1.4e-28, Sum P(4) = 1.4e-28
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 103 KFRSIITYRLCKVSGS----VEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFR-KV 157
K R ++ +L SG VEE E+V SD +K+ L ++ KK + K
Sbjct: 73 KERMLLCRQLGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKR 132
Query: 158 KEEDDANMD 166
KEE++ + D
Sbjct: 133 KEEEEEDDD 141
Score = 47 (21.6 bits), Expect = 1.5e-12, Sum P(4) = 1.5e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 701 DRNMAREICHALQDGPDILVCD 722
D +M E C +DG ++L CD
Sbjct: 446 DHHM--EFCRVCKDGGELLCCD 465
Score = 43 (20.2 bits), Expect = 1.8e-12, Sum P(4) = 1.8e-12
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 920 GEKPRNMNDFLQGKN 934
GE P+++ND Q KN
Sbjct: 1677 GETPKDLNDEKQKKN 1691
Score = 43 (20.2 bits), Expect = 3.6e-11, Sum P(3) = 3.6e-11
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 370 QDYCEVCQQGGEIILCD 386
Score = 37 (18.1 bits), Expect = 1.5e-27, Sum P(4) = 1.5e-27
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 116 SGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKE 159
+GS EE D N+ P + E LSE + K +K K+
Sbjct: 13 AGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKK 56
Score = 37 (18.1 bits), Expect = 1.3e-25, Sum P(4) = 1.3e-25
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 487 GEETKRKIAIEKERQERLK 505
G++ K+K+ +KE++ + K
Sbjct: 113 GKKKKKKLGPKKEKKSKSK 131
>UNIPROTKB|Q14839 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005813 "centrosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 EMBL:X86691
EMBL:AC006064 EMBL:BC038596 IPI:IPI00000846 IPI:IPI00455210
RefSeq:NP_001264.2 UniGene:Hs.162233 PDB:1MM2 PDB:1MM3 PDB:2EE1
PDB:2L5U PDB:2L75 PDBsum:1MM2 PDBsum:1MM3 PDBsum:2EE1 PDBsum:2L5U
PDBsum:2L75 ProteinModelPortal:Q14839 SMR:Q14839 DIP:DIP-31183N
IntAct:Q14839 MINT:MINT-349766 STRING:Q14839 PhosphoSite:Q14839
DMDM:311033360 PaxDb:Q14839 PRIDE:Q14839 DNASU:1108
Ensembl:ENST00000309577 Ensembl:ENST00000357008
Ensembl:ENST00000544484 GeneID:1108 KEGG:hsa:1108 UCSC:uc001qpo.3
UCSC:uc001qpp.3 CTD:1108 GeneCards:GC12M006679 H-InvDB:HIX0201859
HGNC:HGNC:1919 HPA:HPA012008 MIM:603277 neXtProt:NX_Q14839
PharmGKB:PA26455 KO:K11643 OMA:ERMLLCR OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EvolutionaryTrace:Q14839 GenomeRNAi:1108 NextBio:4598
PMAP-CutDB:Q14839 ArrayExpress:Q14839 Bgee:Q14839 CleanEx:HS_CHD4
Genevestigator:Q14839 GermOnline:ENSG00000111642 Uniprot:Q14839
Length = 1912
Score = 210 (79.0 bits), Expect = 4.4e-29, Sum P(4) = 4.4e-29
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q FLY+ + + L+ P++ + NW++EF W P
Sbjct: 743 QGTDTILADEMGLGKTVQTAVFLYSLYKEGH-SKGPFLVSAPLSTIINWEREFEMWAPDM 801
Query: 653 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 711
V + + R E + A +GG ++ F + + I A
Sbjct: 802 YVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELIT-IDMA 860
Query: 712 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 769
+ D L+ DEAH +KN ++ + L Q ++ LTG+PLQNNL E + +++F+
Sbjct: 861 ILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFL- 919
Query: 770 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQL-KGFVQRMDMNVVKK 828
+ F N + +E + + ED +I L++ L ++R+ +V K
Sbjct: 920 -----TPERFHN-LEGFLE--EFADIAKED-QIKK-----LHDMLGPHMLRRLKADVFK- 964
Query: 829 DLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
++P KT ++ V+LSP+Q++ YK L + N R ++ S L + NHP
Sbjct: 965 NMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV--SLLNVVMDLKKCCNHP 1022
Score = 207 (77.9 bits), Expect = 4.4e-29, Sum P(4) = 4.4e-29
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1049 SGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH------------EGYKYERI 1096
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1097 DGGITGNMRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1155
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1156 AFSRAHR 1162
Score = 56 (24.8 bits), Expect = 4.4e-29, Sum P(4) = 4.4e-29
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 423
YC C + +++ C +C + C+ ++ +A E + SC C
Sbjct: 372 YCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKA---PEGKWSCPHC 414
Score = 52 (23.4 bits), Expect = 4.4e-29, Sum P(4) = 4.4e-29
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 114 KVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEE 160
K S S ++ DV+ + DD + ++ + S RKK R K++
Sbjct: 306 KRSSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRSRKKLRTTKKK 352
Score = 47 (21.6 bits), Expect = 1.5e-12, Sum P(4) = 1.5e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 701 DRNMAREICHALQDGPDILVCD 722
D +M E C +DG ++L CD
Sbjct: 446 DHHM--EFCRVCKDGGELLCCD 465
Score = 46 (21.3 bits), Expect = 1.8e-28, Sum P(4) = 1.8e-28
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 103 KFRSIITYRLCKVSGS----VEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFR-KV 157
K R ++ +L SG VEE E+V SD +K+ L ++ KK + K
Sbjct: 73 KERMLLCRQLGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKR 132
Query: 158 KEEDDANMD 166
KEE++ D
Sbjct: 133 KEEEEEEDD 141
Score = 43 (20.2 bits), Expect = 1.8e-12, Sum P(4) = 1.8e-12
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 920 GEKPRNMNDFLQGKN 934
GE P+++ND Q KN
Sbjct: 1677 GETPKDLNDEKQKKN 1691
Score = 43 (20.2 bits), Expect = 3.6e-11, Sum P(3) = 3.6e-11
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 370 QDYCEVCQQGGEIILCD 386
Score = 37 (18.1 bits), Expect = 1.5e-27, Sum P(4) = 1.5e-27
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 116 SGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKE 159
+GS EE D N+ P + E LSE + K +K K+
Sbjct: 13 AGSEEEDMDALLNNSLPPPHPENEEDPEEDLSETETPKLKKKKK 56
Score = 37 (18.1 bits), Expect = 1.3e-25, Sum P(4) = 1.3e-25
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 487 GEETKRKIAIEKERQERLK 505
G++ K+K+ +KE++ + K
Sbjct: 113 GKKKKKKLGPKKEKKSKSK 131
>UNIPROTKB|F1SLR5 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 OMA:ERMLLCR EMBL:CU914489 EMBL:GACC01000070
RefSeq:XP_003126577.3 UniGene:Ssc.25044 Ensembl:ENSSSCT00000000759
GeneID:100515610 KEGG:ssc:100515610 Uniprot:F1SLR5
Length = 1912
Score = 210 (79.0 bits), Expect = 4.4e-29, Sum P(4) = 4.4e-29
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q FLY+ + + L+ P++ + NW++EF W P
Sbjct: 743 QGTDTILADEMGLGKTVQTAVFLYSLYKEGH-SKGPFLVSAPLSTIINWEREFEMWAPDM 801
Query: 653 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 711
V + + R E + A +GG ++ F + + I A
Sbjct: 802 YVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELIT-IDMA 860
Query: 712 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 769
+ D L+ DEAH +KN ++ + L Q ++ LTG+PLQNNL E + +++F+
Sbjct: 861 ILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFL- 919
Query: 770 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQL-KGFVQRMDMNVVKK 828
+ F N + +E + + ED +I L++ L ++R+ +V K
Sbjct: 920 -----TPERFHN-LEGFLE--EFADIAKED-QIKK-----LHDMLGPHMLRRLKADVFK- 964
Query: 829 DLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
++P KT ++ V+LSP+Q++ YK L + N R ++ S L + NHP
Sbjct: 965 NMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV--SLLNVVMDLKKCCNHP 1022
Score = 207 (77.9 bits), Expect = 4.4e-29, Sum P(4) = 4.4e-29
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1049 SGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH------------EGYKYERI 1096
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1097 DGGITGNMRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1155
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1156 AFSRAHR 1162
Score = 56 (24.8 bits), Expect = 4.4e-29, Sum P(4) = 4.4e-29
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 423
YC C + +++ C +C + C+ ++ +A E + SC C
Sbjct: 372 YCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKA---PEGKWSCPHC 414
Score = 52 (23.4 bits), Expect = 4.4e-29, Sum P(4) = 4.4e-29
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 114 KVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEE 160
K S S ++ DV+ + DD + ++ + S RKK R K++
Sbjct: 306 KRSSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRSRKKLRTTKKK 352
Score = 47 (21.6 bits), Expect = 1.5e-12, Sum P(4) = 1.5e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 701 DRNMAREICHALQDGPDILVCD 722
D +M E C +DG ++L CD
Sbjct: 446 DHHM--EFCRVCKDGGELLCCD 465
Score = 46 (21.3 bits), Expect = 1.8e-28, Sum P(4) = 1.8e-28
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 119 VEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFR-KVKEEDDANMD 166
VEE E+V SD +K+ L ++ KK + K KEE++ + D
Sbjct: 93 VEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEDDD 141
Score = 43 (20.2 bits), Expect = 1.8e-12, Sum P(4) = 1.8e-12
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 920 GEKPRNMNDFLQGKN 934
GE P+++ND Q KN
Sbjct: 1677 GETPKDLNDEKQKKN 1691
Score = 43 (20.2 bits), Expect = 3.6e-11, Sum P(3) = 3.6e-11
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 370 QDYCEVCQQGGEIILCD 386
Score = 37 (18.1 bits), Expect = 1.5e-27, Sum P(4) = 1.5e-27
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 116 SGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKE 159
+GS EE D N+ P + E LSE + K +K K+
Sbjct: 13 AGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKK 56
Score = 37 (18.1 bits), Expect = 1.3e-25, Sum P(4) = 1.3e-25
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 487 GEETKRKIAIEKERQERLK 505
G++ K+K+ +KE++ + K
Sbjct: 113 GKKKKKKLGPKKEKKSKSK 131
>UNIPROTKB|F1ST12 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 CTD:1107 KO:K11642 OMA:EPEPGYR
EMBL:CU972380 RefSeq:XP_003132000.1 UniGene:Ssc.1663
Ensembl:ENSSSCT00000019548 GeneID:100188906 KEGG:ssc:100188906
Uniprot:F1ST12
Length = 2002
Score = 213 (80.0 bits), Expect = 4.4e-29, Sum P(3) = 4.4e-29
Identities = 86/303 (28%), Positives = 139/303 (45%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 753 QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTK-GPFLVSAPLSTIINWEREFQMWAP-- 809
Query: 653 LKPLRVFMLEDVSRDRRAELLA-KWRAKGGVFLIGYTAF---RNLSFGKHVKDRNMAREI 708
K V D +D RA + ++ + G AF R HV +
Sbjct: 810 -KFYVVTYTGD--KDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELIT 866
Query: 709 CHALQDGP---DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMV 765
G LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + ++
Sbjct: 867 IDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLL 926
Query: 766 DFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 825
+F+ + F N + +E + + + ED +I ++ H L ++R+ +V
Sbjct: 927 NFL------TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADV 972
Query: 826 VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIW 884
K ++P KT ++ V+LSP+Q++ YK L + N R ++ S L +
Sbjct: 973 FK-NMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV--SLLNIMMDLKKCC 1029
Query: 885 NHP 887
NHP
Sbjct: 1030 NHP 1032
Score = 209 (78.6 bits), Expect = 4.4e-29, Sum P(3) = 4.4e-29
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1059 SGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY------------EGYKYERI 1106
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1107 DGGITGALRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQ 1165
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1166 AFSRAHR 1172
Score = 55 (24.4 bits), Expect = 4.4e-29, Sum P(3) = 4.4e-29
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 423
YC C + +++ C +C + C+ + A E + SC C
Sbjct: 381 YCEVCQQGGEIILCDTCPRAYHLVCLDPELDRA---PEGKWSCPHC 423
Score = 48 (22.0 bits), Expect = 4.0e-12, Sum P(3) = 4.0e-12
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 697 KHVKDRNMAREICHALQDGPDILVCD 722
K +D +M E C +DG ++L CD
Sbjct: 449 KEEEDDHM--EYCRVCKDGGELLCCD 472
Score = 46 (21.3 bits), Expect = 3.8e-28, Sum P(3) = 3.8e-28
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLK 432
YC C +L+ C +C + + C+ + + + W C C+ +LK
Sbjct: 458 YCRVCKDGGELLCCDACISSYHIHCLNPPLPD------IPNGEWLCPRCTCPVLK 506
Score = 43 (20.2 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 379 QDYCEVCQQGGEIILCD 395
Score = 37 (18.1 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1003 GKQGKLWKKGKDWYRLDG 1020
GK ++W + D++ L G
Sbjct: 1736 GKLNEIWHRRHDYWLLAG 1753
>MGI|MGI:1344380 [details] [associations]
symbol:Chd4 "chromodomain helicase DNA binding protein 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=ISO;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016818
"hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 MGI:MGI:1344380 Pfam:PF00385
GO:GO:0005524 GO:GO:0005737 GO:GO:0005813 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
GeneTree:ENSGT00560000076896 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
HOVERGEN:HBG005326 CTD:1108 KO:K11643 OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EMBL:BC058578 IPI:IPI00396802 RefSeq:NP_666091.1
UniGene:Mm.333388 ProteinModelPortal:Q6PDQ2 SMR:Q6PDQ2
DIP:DIP-59651N IntAct:Q6PDQ2 STRING:Q6PDQ2 PhosphoSite:Q6PDQ2
PaxDb:Q6PDQ2 PRIDE:Q6PDQ2 Ensembl:ENSMUST00000056889 GeneID:107932
KEGG:mmu:107932 UCSC:uc009dtk.1 NextBio:359735 PMAP-CutDB:Q6PDQ2
Bgee:Q6PDQ2 CleanEx:MM_CHD4 Genevestigator:Q6PDQ2
GermOnline:ENSMUSG00000063870 Uniprot:Q6PDQ2
Length = 1915
Score = 210 (79.0 bits), Expect = 4.4e-29, Sum P(4) = 4.4e-29
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q FLY+ + + L+ P++ + NW++EF W P
Sbjct: 736 QGTDTILADEMGLGKTVQTAVFLYSLYKEGH-SKGPFLVSAPLSTIINWEREFEMWAPDM 794
Query: 653 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 711
V + + R E + A +GG ++ F + + I A
Sbjct: 795 YVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELIT-IDMA 853
Query: 712 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 769
+ D L+ DEAH +KN ++ + L Q ++ LTG+PLQNNL E + +++F+
Sbjct: 854 ILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFL- 912
Query: 770 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQL-KGFVQRMDMNVVKK 828
+ F N + +E + + ED +I L++ L ++R+ +V K
Sbjct: 913 -----TPERFHN-LEGFLE--EFADIAKED-QIKK-----LHDMLGPHMLRRLKADVFK- 957
Query: 829 DLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
++P KT ++ V+LSP+Q++ YK L + N R ++ S L + NHP
Sbjct: 958 NMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV--SLLNVVMDLKKCCNHP 1015
Score = 207 (77.9 bits), Expect = 4.4e-29, Sum P(4) = 4.4e-29
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1042 SGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH------------EGYKYERI 1089
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1090 DGGITGNMRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1148
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1149 AFSRAHR 1155
Score = 56 (24.8 bits), Expect = 4.4e-29, Sum P(4) = 4.4e-29
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 423
YC C + +++ C +C + C+ ++ +A E + SC C
Sbjct: 365 YCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKA---PEGKWSCPHC 407
Score = 52 (23.4 bits), Expect = 4.4e-29, Sum P(4) = 4.4e-29
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 114 KVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEE 160
K S S ++ DV+ + DD + ++ + S RKK R K++
Sbjct: 299 KRSSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRSRKKLRTAKKK 345
Score = 47 (21.6 bits), Expect = 1.5e-12, Sum P(4) = 1.5e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 701 DRNMAREICHALQDGPDILVCD 722
D +M E C +DG ++L CD
Sbjct: 439 DHHM--EFCRVCKDGGELLCCD 458
Score = 46 (21.3 bits), Expect = 1.8e-28, Sum P(4) = 1.8e-28
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 119 VEEIEDVDGNSDDPF--VADAIANEKELALSEEQRKKFRKVKEEDDANMD 166
VEE E+V SD +K+L +E++ K ++ +EE++ + D
Sbjct: 86 VEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDED 135
Score = 43 (20.2 bits), Expect = 3.6e-11, Sum P(3) = 3.6e-11
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 363 QDYCEVCQQGGEIILCD 379
Score = 38 (18.4 bits), Expect = 5.6e-12, Sum P(4) = 5.6e-12
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 920 GEKPRNMNDFLQGKN 934
GE P++++D Q KN
Sbjct: 1680 GETPKDLSDEKQKKN 1694
Score = 37 (18.1 bits), Expect = 9.3e-27, Sum P(3) = 9.3e-27
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 487 GEETKRKIAIEKERQERLK 505
G++ K+K+ +KE++ + K
Sbjct: 106 GKKKKKKLGPKKEKKSKSK 124
Score = 37 (18.1 bits), Expect = 7.1e-12, Sum P(4) = 7.1e-12
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 1023 ESSERQKLVERFNEPLNKRVKCT 1045
E E+ ++ ER EP+ K T
Sbjct: 1619 EKVEKAEVKERTEEPMETEAKGT 1641
>UNIPROTKB|E9PU01 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI01016558 PRIDE:E9PU01 Ensembl:ENSRNOT00000055970
ArrayExpress:E9PU01 Uniprot:E9PU01
Length = 1915
Score = 210 (79.0 bits), Expect = 4.4e-29, Sum P(4) = 4.4e-29
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q FLY+ + + L+ P++ + NW++EF W P
Sbjct: 736 QGTDTILADEMGLGKTVQTAVFLYSLYKEGH-SKGPFLVSAPLSTIINWEREFEMWAPDM 794
Query: 653 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 711
V + + R E + A +GG ++ F + + I A
Sbjct: 795 YVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELIT-IDMA 853
Query: 712 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 769
+ D L+ DEAH +KN ++ + L Q ++ LTG+PLQNNL E + +++F+
Sbjct: 854 ILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFL- 912
Query: 770 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQL-KGFVQRMDMNVVKK 828
+ F N + +E + + ED +I L++ L ++R+ +V K
Sbjct: 913 -----TPERFHN-LEGFLE--EFADIAKED-QIKK-----LHDMLGPHMLRRLKADVFK- 957
Query: 829 DLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
++P KT ++ V+LSP+Q++ YK L + N R ++ S L + NHP
Sbjct: 958 NMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV--SLLNVVMDLKKCCNHP 1015
Score = 207 (77.9 bits), Expect = 4.4e-29, Sum P(4) = 4.4e-29
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1042 SGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH------------EGYKYERI 1089
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1090 DGGITGNMRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1148
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1149 AFSRAHR 1155
Score = 56 (24.8 bits), Expect = 4.4e-29, Sum P(4) = 4.4e-29
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 423
YC C + +++ C +C + C+ ++ +A E + SC C
Sbjct: 365 YCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKA---PEGKWSCPHC 407
Score = 52 (23.4 bits), Expect = 4.4e-29, Sum P(4) = 4.4e-29
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 114 KVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEE 160
K S S ++ DV+ + DD + ++ + S RKK R K++
Sbjct: 299 KRSSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRSRKKLRTAKKK 345
Score = 47 (21.6 bits), Expect = 1.5e-12, Sum P(4) = 1.5e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 701 DRNMAREICHALQDGPDILVCD 722
D +M E C +DG ++L CD
Sbjct: 439 DHHM--EFCRVCKDGGELLCCD 458
Score = 43 (20.2 bits), Expect = 3.6e-11, Sum P(3) = 3.6e-11
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 363 QDYCEVCQQGGEIILCD 379
Score = 42 (19.8 bits), Expect = 4.7e-28, Sum P(4) = 4.7e-28
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 119 VEEIED--VDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMD 166
VEE E+ + +S+ +K+L +E++ K ++ +EE++ + D
Sbjct: 86 VEEDEEAALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDDD 135
Score = 38 (18.4 bits), Expect = 1.2e-27, Sum P(4) = 1.2e-27
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 116 SGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKE 159
+GS EE D N+ P ++ E LSE + K +K K+
Sbjct: 13 AGSEEEDMDALLNNSLPPPHPENEDDPEEDLSEAETPKLKKKKK 56
Score = 38 (18.4 bits), Expect = 5.6e-12, Sum P(4) = 5.6e-12
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 920 GEKPRNMNDFLQGKN 934
GE P++++D Q KN
Sbjct: 1680 GETPKDLSDEKQKKN 1694
Score = 37 (18.1 bits), Expect = 1.0e-25, Sum P(4) = 1.0e-25
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 487 GEETKRKIAIEKERQERLK 505
G++ K+K+ +KE++ + K
Sbjct: 106 GKKKKKKLGPKKEKKSKSK 124
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 226 (84.6 bits), Expect = 4.6e-29, Sum P(2) = 4.6e-29
Identities = 80/303 (26%), Positives = 139/303 (45%)
Query: 597 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTA-LIVTPVNVLHNWKQEFMKWRPSELKP 655
CILA MGLGKT Q IAFL N+G+ L++ P++ + NW++EF W +E+
Sbjct: 58 CILADEMGLGKTIQSIAFLQEVY---NVGIHGPFLVIAPLSTITNWEREFNTW--TEMNT 112
Query: 656 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 715
+ V+ SR + + G + G A++ F + M C L++
Sbjct: 113 I-VYHGSLASRQMIQQYEMYCKDSRGRLIPG--AYK---FDALITTFEMILSDCPELREI 166
Query: 716 P-DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLG 774
++ DEAH +KN +LK + + ++ LTG+PLQN + E + ++ F+
Sbjct: 167 EWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFP 226
Query: 775 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT 834
S EF F + T E V Q+ + LK + R V+K+L PK
Sbjct: 227 SESEFLKDFGDL--------KTEEQV----QKLQAI---LKPMMLRRLKEDVEKNLAPKQ 271
Query: 835 VFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLT 893
+I V+L+ +Q++ Y+ L+ + F + + + + L + NHP ++
Sbjct: 272 ETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNM-PNLLNTMMELRKCCNHPYLINGA 330
Query: 894 KDK 896
++K
Sbjct: 331 EEK 333
Score = 189 (71.6 bits), Expect = 4.6e-29, Sum P(2) = 4.6e-29
Identities = 52/138 (37%), Positives = 76/138 (55%)
Query: 949 HE-HTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGK 1007
H+ H + +GK+VL+ +L G K L+FSQ + LD++E YL + +
Sbjct: 347 HDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQ------RRY 400
Query: 1008 LWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIV 1067
L++ R+DGR + RQ ++RF++P + R L+ TRAG LGINL +A+ II
Sbjct: 401 LYE------RIDGRVRGNLRQAAIDRFSKPDSDRF-VFLLCTRAGGLGINLTAADTCIIF 453
Query: 1068 DGSWNPTYDLQAIYRAWR 1085
D WNP DLQA R R
Sbjct: 454 DSDWNPQNDLQAQARCHR 471
>UNIPROTKB|J9NW81 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:AAEX03015287 Ensembl:ENSCAFT00000048002
Uniprot:J9NW81
Length = 1932
Score = 210 (79.0 bits), Expect = 4.6e-29, Sum P(4) = 4.6e-29
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q FLY+ + + L+ P++ + NW++EF W P
Sbjct: 763 QGTDTILADEMGLGKTVQTAVFLYSLYKEGH-SKGPFLVSAPLSTIINWEREFEMWAPDM 821
Query: 653 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 711
V + + R E + A +GG ++ F + + I A
Sbjct: 822 YVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELIT-IDMA 880
Query: 712 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 769
+ D L+ DEAH +KN ++ + L Q ++ LTG+PLQNNL E + +++F+
Sbjct: 881 ILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFL- 939
Query: 770 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQL-KGFVQRMDMNVVKK 828
+ F N + +E + + ED +I L++ L ++R+ +V K
Sbjct: 940 -----TPERFHN-LEGFLE--EFADIAKED-QIKK-----LHDMLGPHMLRRLKADVFK- 984
Query: 829 DLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
++P KT ++ V+LSP+Q++ YK L + N R ++ S L + NHP
Sbjct: 985 NMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV--SLLNVVMDLKKCCNHP 1042
Score = 207 (77.9 bits), Expect = 4.6e-29, Sum P(4) = 4.6e-29
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1069 SGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH------------EGYKYERI 1116
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1117 DGGITGNMRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1175
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1176 AFSRAHR 1182
Score = 56 (24.8 bits), Expect = 4.6e-29, Sum P(4) = 4.6e-29
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 423
YC C + +++ C +C + C+ ++ +A E + SC C
Sbjct: 392 YCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKA---PEGKWSCPHC 434
Score = 52 (23.4 bits), Expect = 4.6e-29, Sum P(4) = 4.6e-29
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 114 KVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEE 160
K S S ++ DV+ + DD + ++ + S RKK R K++
Sbjct: 326 KRSSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRSRKKLRTTKKK 372
Score = 47 (21.6 bits), Expect = 1.5e-28, Sum P(4) = 1.5e-28
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 103 KFRSIITYRLCKVSGS----VEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFR-KV 157
K R ++ +L SG VEE E+V SD +K+ L ++ KK + K
Sbjct: 93 KERMLLCRQLGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKR 152
Query: 158 KEEDDANMD 166
KEE++ + D
Sbjct: 153 KEEEEEDDD 161
Score = 47 (21.6 bits), Expect = 1.5e-12, Sum P(4) = 1.5e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 701 DRNMAREICHALQDGPDILVCD 722
D +M E C +DG ++L CD
Sbjct: 466 DHHM--EFCRVCKDGGELLCCD 485
Score = 43 (20.2 bits), Expect = 1.9e-12, Sum P(4) = 1.9e-12
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 920 GEKPRNMNDFLQGKN 934
GE P+++ND Q KN
Sbjct: 1697 GETPKDLNDEKQKKN 1711
Score = 43 (20.2 bits), Expect = 3.7e-11, Sum P(3) = 3.7e-11
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 390 QDYCEVCQQGGEIILCD 406
Score = 37 (18.1 bits), Expect = 1.6e-27, Sum P(4) = 1.6e-27
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 116 SGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKE 159
+GS EE D N+ P + E LSE + K +K K+
Sbjct: 33 AGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKK 76
Score = 37 (18.1 bits), Expect = 1.4e-25, Sum P(4) = 1.4e-25
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 487 GEETKRKIAIEKERQERLK 505
G++ K+K+ +KE++ + K
Sbjct: 133 GKKKKKKLGPKKEKKSKSK 151
>UNIPROTKB|F1N3F6 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:DAAA02014463 IPI:IPI00877578
Ensembl:ENSBTAT00000019612 ArrayExpress:F1N3F6 Uniprot:F1N3F6
Length = 1934
Score = 210 (79.0 bits), Expect = 4.6e-29, Sum P(4) = 4.6e-29
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q FLY+ + + L+ P++ + NW++EF W P
Sbjct: 765 QGTDTILADEMGLGKTVQTAVFLYSLYKEGH-SKGPFLVSAPLSTIINWEREFEMWAPDM 823
Query: 653 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 711
V + + R E + A +GG ++ F + + I A
Sbjct: 824 YVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELIT-IDMA 882
Query: 712 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 769
+ D L+ DEAH +KN ++ + L Q ++ LTG+PLQNNL E + +++F+
Sbjct: 883 ILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFL- 941
Query: 770 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQL-KGFVQRMDMNVVKK 828
+ F N + +E + + ED +I L++ L ++R+ +V K
Sbjct: 942 -----TPERFHN-LEGFLE--EFADIAKED-QIKK-----LHDMLGPHMLRRLKADVFK- 986
Query: 829 DLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
++P KT ++ V+LSP+Q++ YK L + N R ++ S L + NHP
Sbjct: 987 NMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV--SLLNVVMDLKKCCNHP 1044
Score = 207 (77.9 bits), Expect = 4.6e-29, Sum P(4) = 4.6e-29
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1071 SGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH------------EGYKYERI 1118
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1119 DGGITGNMRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1177
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1178 AFSRAHR 1184
Score = 56 (24.8 bits), Expect = 4.6e-29, Sum P(4) = 4.6e-29
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 423
YC C + +++ C +C + C+ ++ +A E + SC C
Sbjct: 394 YCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKA---PEGKWSCPHC 436
Score = 52 (23.4 bits), Expect = 4.6e-29, Sum P(4) = 4.6e-29
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 114 KVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEE 160
K S S ++ DV+ + DD + ++ + S RKK R K++
Sbjct: 328 KRSSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRSRKKLRTTKKK 374
Score = 47 (21.6 bits), Expect = 1.5e-28, Sum P(4) = 1.5e-28
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 119 VEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFR-KVKEEDDANMD 166
VEE E+V SD +K+ L ++ KK + K KEE++ + D
Sbjct: 113 VEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEDED 161
Score = 47 (21.6 bits), Expect = 1.5e-12, Sum P(4) = 1.5e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 701 DRNMAREICHALQDGPDILVCD 722
D +M E C +DG ++L CD
Sbjct: 468 DHHM--EFCRVCKDGGELLCCD 487
Score = 43 (20.2 bits), Expect = 1.9e-12, Sum P(4) = 1.9e-12
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 920 GEKPRNMNDFLQGKN 934
GE P+++ND Q KN
Sbjct: 1699 GETPKDLNDEKQKKN 1713
Score = 43 (20.2 bits), Expect = 3.7e-11, Sum P(3) = 3.7e-11
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 392 QDYCEVCQQGGEIILCD 408
Score = 37 (18.1 bits), Expect = 9.6e-27, Sum P(3) = 9.6e-27
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 487 GEETKRKIAIEKERQERLK 505
G++ K+K+ +KE++ + K
Sbjct: 133 GKKKKKKLGPKKEKKSKSK 151
>UNIPROTKB|F1LM59 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00365698 PRIDE:F1LM59 Ensembl:ENSRNOT00000024864
ArrayExpress:F1LM59 Uniprot:F1LM59
Length = 1945
Score = 210 (79.0 bits), Expect = 4.8e-29, Sum P(4) = 4.8e-29
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q FLY+ + + L+ P++ + NW++EF W P
Sbjct: 764 QGTDTILADEMGLGKTVQTAVFLYSLYKEGH-SKGPFLVSAPLSTIINWEREFEMWAPDM 822
Query: 653 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 711
V + + R E + A +GG ++ F + + I A
Sbjct: 823 YVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELIT-IDMA 881
Query: 712 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 769
+ D L+ DEAH +KN ++ + L Q ++ LTG+PLQNNL E + +++F+
Sbjct: 882 ILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFL- 940
Query: 770 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQL-KGFVQRMDMNVVKK 828
+ F N + +E + + ED +I L++ L ++R+ +V K
Sbjct: 941 -----TPERFHN-LEGFLE--EFADIAKED-QIKK-----LHDMLGPHMLRRLKADVFK- 985
Query: 829 DLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
++P KT ++ V+LSP+Q++ YK L + N R ++ S L + NHP
Sbjct: 986 NMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV--SLLNVVMDLKKCCNHP 1043
Score = 207 (77.9 bits), Expect = 4.8e-29, Sum P(4) = 4.8e-29
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1070 SGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH------------EGYKYERI 1117
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1118 DGGITGNMRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1176
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1177 AFSRAHR 1183
Score = 56 (24.8 bits), Expect = 4.8e-29, Sum P(4) = 4.8e-29
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 423
YC C + +++ C +C + C+ ++ +A E + SC C
Sbjct: 393 YCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKA---PEGKWSCPHC 435
Score = 52 (23.4 bits), Expect = 4.8e-29, Sum P(4) = 4.8e-29
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 114 KVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEE 160
K S S ++ DV+ + DD + ++ + S RKK R K++
Sbjct: 327 KRSSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRSRKKLRTAKKK 373
Score = 47 (21.6 bits), Expect = 1.6e-12, Sum P(4) = 1.6e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 701 DRNMAREICHALQDGPDILVCD 722
D +M E C +DG ++L CD
Sbjct: 467 DHHM--EFCRVCKDGGELLCCD 486
Score = 43 (20.2 bits), Expect = 3.8e-11, Sum P(3) = 3.8e-11
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 391 QDYCEVCQQGGEIILCD 407
Score = 42 (19.8 bits), Expect = 5.0e-28, Sum P(4) = 5.0e-28
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 119 VEEIED--VDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMD 166
VEE E+ + +S+ +K+L +E++ K ++ +EE++ + D
Sbjct: 114 VEEDEEAALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDDD 163
Score = 38 (18.4 bits), Expect = 1.3e-27, Sum P(4) = 1.3e-27
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 116 SGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKE 159
+GS EE D N+ P ++ E LSE + K +K K+
Sbjct: 34 AGSEEEDMDALLNNSLPPPHPENEDDPEEDLSEAETPKLKKKKK 77
Score = 38 (18.4 bits), Expect = 6.0e-12, Sum P(4) = 6.0e-12
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 920 GEKPRNMNDFLQGKN 934
GE P++++D Q KN
Sbjct: 1714 GETPKDLSDEKQKKN 1728
Score = 37 (18.1 bits), Expect = 1.1e-25, Sum P(4) = 1.1e-25
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 487 GEETKRKIAIEKERQERLK 505
G++ K+K+ +KE++ + K
Sbjct: 134 GKKKKKKLGPKKEKKSKSK 152
>WB|WBGene00010845 [details] [associations]
symbol:M03C11.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0003677 GO:GO:0006281 GO:GO:0016568 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 EMBL:Z49128 EMBL:AL021171 PIR:T23046
RefSeq:NP_499301.2 ProteinModelPortal:G5EDG2 SMR:G5EDG2
EnsemblMetazoa:M03C11.8 GeneID:176462 KEGG:cel:CELE_M03C11.8
WormBase:M03C11.8 OMA:KEERYMA NextBio:892680 Uniprot:G5EDG2
Length = 989
Score = 226 (84.6 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
Identities = 84/299 (28%), Positives = 140/299 (46%)
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
+K L IL MGLGKT Q++AFL + G LIV P + + NW EF KW PS
Sbjct: 410 NKDLNAILGDEMGLGKTIQIVAFLSYLKQIGKTGPH--LIVVPSSTIENWIGEFHKWCPS 467
Query: 652 ELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 711
++ L + +D + R + K + V L Y N+ K D+ + +
Sbjct: 468 -IQLLTYYGSQDERKHLRHRV-KKQKDHIDVILTTY----NMVTSKS-DDKKFFKNF--S 518
Query: 712 LQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFV-RE 770
L + ++ DE HM+KN ++ + L +VK +++I LTG+PLQNNL+E ++ FV +
Sbjct: 519 L----NYVIYDEGHMLKNCDSERYRGLMKVKGKKKILLTGTPLQNNLIELISLMYFVLSK 574
Query: 771 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQ--LKGFVQRMDMNVVKK 828
F + + Q+ + G ++ + K + Q+ I + L+ ++ R N V
Sbjct: 575 VFNKYCEDITHLLQHFKQLGPALDTKN---KALYQQDRIEEAKAILQPYILRRLKNQVLG 631
Query: 829 DLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
LP K+ +I V++ Q++LY ++ S + + L Q NHP
Sbjct: 632 SLPSKSEQIIEVEMKKPQKQLYDNIVE--ALQQSEESGDS-----YGSLMRLRQAANHP 683
Score = 186 (70.5 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
Identities = 53/127 (41%), Positives = 70/127 (55%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK L +L GDK L+FSQ LD++E YL+ +G + RL
Sbjct: 752 SGKCEQLDVMLPEIQKKGDKVLIFSQFTSMLDILEVYLNI------------RGYSYKRL 799
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG+T +RQ+++ FN L+K + L+STRAG LGINL SAN +II D +NP D Q
Sbjct: 800 DGQTPVLDRQEMINEFN--LSKDLFVFLLSTRAGGLGINLTSANHIIIHDIDFNPYNDKQ 857
Query: 1079 AIYRAWR 1085
A R R
Sbjct: 858 AEDRCHR 864
Score = 53 (23.7 bits), Expect = 4.8e-29, Sum P(3) = 4.8e-29
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 120 EEIED---VDGN---SDDPFVADAIANEKELALSEEQRKKFRKVKEED 161
EE ED DG+ SDD + + A E +E R+ F K K+ED
Sbjct: 256 EEDEDDMNADGDETPSDDSDIEERRAKRGETKNQKECREFFNKAKKED 303
Score = 51 (23.0 bits), Expect = 7.7e-29, Sum P(3) = 7.7e-29
Identities = 19/93 (20%), Positives = 35/93 (37%)
Query: 106 SIITYRLCKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKK--FRKVKEEDDA 163
+++ ++ K S + + +D S+D F+ D +EK E+ + K E ++
Sbjct: 167 NVMRTQMAKRSAASKRKIVIDDESEDDFINDEEISEKGSGKGSEKEESEGSGKDSETEEV 226
Query: 164 NMDXXXXXXXXXXXXXXISKQKEIGSVDWTIED 196
M K+K DW ED
Sbjct: 227 TMKQGQSLKAAMAKAQKEQKKKAESDEDWE-ED 258
Score = 42 (19.8 bits), Expect = 6.6e-28, Sum P(3) = 6.6e-28
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 184 QKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGD 220
+K+ GS D ED ET P D +N++ +D D
Sbjct: 66 KKQKGSDD-DDEDYVDETMPSEDEEDFDNNEEDEDDD 101
Score = 41 (19.5 bits), Expect = 8.4e-28, Sum P(3) = 8.4e-28
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 489 ETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSA 529
+T ++ + + + SLQ +K L++ +G L+A
Sbjct: 8 QTGERVRVAHQGNPQSSSLQADMDAKKALLSQNLNNGHLTA 48
Score = 41 (19.5 bits), Expect = 8.4e-28, Sum P(3) = 8.4e-28
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 204 LVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNG 250
+ A K K D D + +++ ET +S ++ER G
Sbjct: 238 MAKAQKEQKKKAESDEDWEEDEDDMNADGDETPSDDSDIEERRAKRG 284
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 254 (94.5 bits), Expect = 5.2e-29, Sum P(2) = 5.2e-29
Identities = 82/307 (26%), Positives = 150/307 (48%)
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
++G+ ILA MGLGKT Q I+ L + N+ L+VTP + LHNW+QE K+ P
Sbjct: 688 EQGINGILADEMGLGKTVQSISVLAYLAETYNMW-GPFLVVTPASTLHNWQQEITKFVP- 745
Query: 652 ELKPLRVFMLEDVSRDRRAELLAK-WRAKGGVFLIGYTAFRNLSFGKHVKDRNM-AREIC 709
E K L + ++DR+ +L K W K + Y ++ F V + +I
Sbjct: 746 EFKVLPYW---GNAKDRK--ILRKFWDRKS----LRYD--KDSPFHVLVTSYQLIVADIA 794
Query: 710 HALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 769
+ + ++ DEA IK++ + ++L + C+ R+ LTG+P+QN++ E + ++ F+
Sbjct: 795 YFQKMKWQYMILDEAQAIKSSSSSRWKSLLNLTCRNRLLLTGTPIQNSMQELWALLHFIM 854
Query: 770 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD 829
S EF + F IE+ +N++ ++ ++ +R H++ LK F+ R V+ +
Sbjct: 855 PSIFDSHDEFSDWFAKDIESHAQSNTSLDEQQL--RRLHMI---LKPFMLRRIKKNVQSE 909
Query: 830 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRV----SNEKIRKSFFAGY-QALAQIW 884
L K + L+ Q++LY++ ++ + SN S A ++
Sbjct: 910 LGDKVEIDVYCDLTTRQKKLYQQLRSQISMSDTDLLELESNSTSSDSSLANLVMQFRKVC 969
Query: 885 NHPGILQ 891
NHP + +
Sbjct: 970 NHPDLFE 976
Score = 165 (63.1 bits), Expect = 5.2e-29, Sum P(2) = 5.2e-29
Identities = 45/127 (35%), Positives = 67/127 (52%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK+ L ++L G + L++ Q + + E YL+ +K K + RL
Sbjct: 1235 SGKLAKLDELLIDLKRGGHRILIYFQMTRMMQIFEEYLA-----------YKSYK-YIRL 1282
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T R+++V+ + N + ++STRAG LG+NL SA+ VI D WNPT D Q
Sbjct: 1283 DGSTTIESRREMVQAWQT--NPEIFIFMLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQ 1340
Query: 1079 AIYRAWR 1085
A+ RA R
Sbjct: 1341 AMDRAHR 1347
Score = 129 (50.5 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 36/105 (34%), Positives = 56/105 (53%)
Query: 552 GEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 611
G+ + P+ + LK +Q+ G+ ++ N+ + +G+ ILA MGLGKT Q
Sbjct: 658 GDITIPQPNMLKCTLKEYQLKGLNWL-ANLYE---------QGINGILADEMGLGKTVQS 707
Query: 612 IAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPL 656
I+ L + N+ L+VTP + LHNW+QE K+ P E K L
Sbjct: 708 ISVLAYLAETYNMW-GPFLVVTPASTLHNWQQEITKFVP-EFKVL 750
Score = 37 (18.1 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 641 WKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVK 700
WK+ R +LK L D ++ E AK +++ FLI T + GK +K
Sbjct: 505 WKRNERLER--DLKKKHEKELLDKAKKEEEEREAKRQSRKLNFLITQTELYSHFIGKKIK 562
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 178 (67.7 bits), Expect = 6.0e-29, Sum P(4) = 6.0e-29
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RRI LTG+PLQN L E + +++F+ S
Sbjct: 822 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCS 881
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 882 TFEQWFNAPFAMTGERVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVESQLPEKVEY 938
Query: 837 VITVKLSPLQRRLYKRFLDLHGF--TNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S LQ+ LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 939 VIKCDMSALQKILY-RHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ 997
Score = 174 (66.3 bits), Expect = 6.0e-29, Sum P(4) = 6.0e-29
Identities = 50/127 (39%), Positives = 68/127 (53%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL + L+F Q + ++E Y + + L+ RL
Sbjct: 1023 SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAF------RNFLY------LRL 1070
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T+S +R L+++FNEP + L+STRAG LG+NL +A+ VII D WNP DLQ
Sbjct: 1071 DGTTKSEDRAALLKKFNEP-GSQYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQ 1129
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1130 AQDRAHR 1136
Score = 132 (51.5 bits), Expect = 6.0e-29, Sum P(4) = 6.0e-29
Identities = 57/212 (26%), Positives = 90/212 (42%)
Query: 488 EETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNV 547
EE+ R A EK + S +V +++ + D D G + +
Sbjct: 623 EESSRLEADEKILLDP-NSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHA 681
Query: 548 VREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGK 607
+ E+ E+ + I+ LK +Q+ G+ +M V + L ILA MGLGK
Sbjct: 682 ITERVEKQSSL--LINGTLKHYQLQGLEWM----------VSLYNNNLNGILADEMGLGK 729
Query: 608 TFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRD 667
T Q IA + M L LI+ P++ L NW EF KW PS +K +
Sbjct: 730 TIQTIALITYLMEHKRLN-GPYLIIVPLSTLSNWTYEFDKWAPSVVK----ISYKGTPAM 784
Query: 668 RRAELLAKWRAKGGVFLIGYTAFRNLSFGKHV 699
RR+ L+ + R+ G F + T + + KH+
Sbjct: 785 RRS-LVPQLRS--GKFNVLLTTYEYIIKDKHI 813
Score = 54 (24.1 bits), Expect = 5.4e-21, Sum P(4) = 5.4e-21
Identities = 23/81 (28%), Positives = 34/81 (41%)
Query: 496 IEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDAITGYIVNVVREKGEE 554
IE+ER+ R K Q S L ++ + S I+ L A+ + N RE+ +E
Sbjct: 411 IEQERKRRQKH---QEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKE 467
Query: 555 AVRIPSSISAKLKAHQVVGIR 575
RI +L A G R
Sbjct: 468 TERIEKERMRRLMAEDEEGYR 488
Score = 39 (18.8 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 488 EETKRKIAIEKERQERL 504
E+ K IEKER RL
Sbjct: 463 EQKKETERIEKERMRRL 479
Score = 37 (18.1 bits), Expect = 6.0e-29, Sum P(4) = 6.0e-29
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 131 DPFVADA--IANEKELALSEEQRKKFRKVKEEDDANMD 166
D +VA+ + E + A + +++KK R+ K++ + N +
Sbjct: 507 DEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAE 544
Score = 37 (18.1 bits), Expect = 2.3e-28, Sum P(5) = 2.3e-28
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 114 KVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKV 157
+++ ++E+E++ G+ A K L L QR+ ++V
Sbjct: 347 RIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEV 390
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 254 (94.5 bits), Expect = 6.6e-29, Sum P(3) = 6.6e-29
Identities = 115/411 (27%), Positives = 179/411 (43%)
Query: 594 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 653
GL ILA MGLGKT Q IAFL + N G LIV P + + NW +E W P+ L
Sbjct: 517 GLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPH--LIVVPASTIDNWLREVNLWCPT-L 573
Query: 654 KPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 713
K L + ++ + R + +++ + V + Y + S DR++ R + L
Sbjct: 574 KVLCYYGSQEERKQIRYNIHSRYE-EYNVIVTTYNCAISSS-----DDRSLFRRL--KL- 624
Query: 714 DGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-F 772
+ + DE HM+KN + Q L + R+ LTG+P+QNNL+E +++FV F
Sbjct: 625 ---NYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMF 681
Query: 773 LGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP 832
S+ E R F + + S E +I + + I K F+ R V K LPP
Sbjct: 682 SSSTSEIRRMFSSKTKPADE-QSIYEKERIAHAKQII-----KPFILRRVKEEVLKQLPP 735
Query: 833 KTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQL 892
K + +S Q +LY ++L ++N + L ++ NHP + +
Sbjct: 736 KKDRIELCAMSEKQEQLY---MNLFNRLKKSINNMEKNTEMCNVMMQLRKMANHPLLHRQ 792
Query: 893 TKDKGYPSRXXXXXXXXXXNMDYNV-VIGEKPRNMNDF------LQGKNDDGFFQKDWWN 945
+ + N +I E M DF Q ++ + F Q D
Sbjct: 793 YYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNF-QLDM-- 849
Query: 946 DLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYL 996
DL+ LD SGK +L IL+ GD+ ++FSQ LD++E L
Sbjct: 850 DLI-------LD-SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLL 892
Score = 163 (62.4 bits), Expect = 6.6e-29, Sum P(3) = 6.6e-29
Identities = 52/130 (40%), Positives = 71/130 (54%)
Query: 956 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
LD SGK +L IL+ GD+ ++FSQ LD++E L Q + +
Sbjct: 853 LD-SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKH-----HQHR-------Y 899
Query: 1016 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1075
RLDG+T+ SER L++ FN ++ + L+ST+AG LGINL SAN VI+ D NP
Sbjct: 900 LRLDGKTQISERIHLIDEFNTDMD--IFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 957
Query: 1076 DLQAIYRAWR 1085
D QA R R
Sbjct: 958 DKQAEDRCHR 967
Score = 121 (47.7 bits), Expect = 5.5e-14, Sum P(4) = 5.5e-14
Identities = 43/145 (29%), Positives = 66/145 (45%)
Query: 534 EVLGDAITGYIVNVVREKGEEAVRIPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKSG 591
E + + +T + + G PS + S LK +Q VG+ W ++
Sbjct: 465 EDISNKLTKQVTMLTGNGGGWNTEQPSILNQSLSLKPYQKVGLN--WLALVHK------- 515
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
GL ILA MGLGKT Q IAFL + N G LIV P + + NW +E W P+
Sbjct: 516 -HGLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPH--LIVVPASTIDNWLREVNLWCPT 572
Query: 652 ELKPLRVFMLEDVSRDRRAELLAKW 676
LK L + ++ + R + +++
Sbjct: 573 -LKVLCYYGSQEERKQIRYNIHSRY 596
Score = 46 (21.3 bits), Expect = 6.6e-29, Sum P(3) = 6.6e-29
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 287 IIIGSDEADVVKDECSTKLEDHSVSPENI 315
I + SD DVV CS+ +++ + + +
Sbjct: 92 IDLSSDSEDVVSPNCSSTVQEKKFNKDTV 120
Score = 44 (20.5 bits), Expect = 5.0e-28, Sum P(4) = 5.0e-28
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 195 EDSAVETRPLVDASKSLSNKKTDDG----DMPGNNNEVALQNLETGVLE 239
EDS+V P D S+S K G D+ ++ +V N + V E
Sbjct: 64 EDSSVPETPENDRKASISYFKNQRGIQYIDLSSDSEDVVSPNCSSTVQE 112
Score = 38 (18.4 bits), Expect = 5.0e-28, Sum P(4) = 5.0e-28
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 288 IIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLH 325
+I E D D S+ ED+S E + D LH
Sbjct: 356 VIEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILH 393
Score = 38 (18.4 bits), Expect = 2.1e-27, Sum P(4) = 2.1e-27
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 22 LQKKIANDGSENGGKEVSDINWNSVNKI 49
++KK + G E+ S NW I
Sbjct: 230 MKKKRLDHGEESNESAESSTNWEKQESI 257
Score = 37 (18.1 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 685 IGYTAFRNLSFGKHVKDRNMAREICHALQD 714
+G + + S G+ V + +I H LQD
Sbjct: 368 VGSSLDEDYSSGEEVMEDGYKGKILHFLQD 397
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 223 (83.6 bits), Expect = 7.1e-29, Sum P(2) = 7.1e-29
Identities = 80/303 (26%), Positives = 141/303 (46%)
Query: 597 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTA-LIVTPVNVLHNWKQEFMKWRPSELKP 655
CILA MGLGKT Q I FLY + + G+R LI+ P++ + NW++EF W +++
Sbjct: 407 CILADEMGLGKTIQSITFLYEILLT---GIRGPFLIIAPLSTIANWEREFRTW--TDINV 461
Query: 656 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 715
+ V+ +SR + +R G + G A+R F + M C L
Sbjct: 462 V-VYHGSLISRQMIQQYEMYFRDSQGRIIRG--AYR---FQAIITTFEMILGGCGELNAI 515
Query: 716 P-DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLG 774
++ DEAH +KN + LK + + ++ LTG+PLQN + E + ++ F+
Sbjct: 516 EWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFP 575
Query: 775 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT 834
S F F + T E V Q+ + + + ++R+ +V KK L PK
Sbjct: 576 SESTFMQEFGDL--------KTEEQV----QKLQAILKPM--MLRRLKEDVEKK-LAPKE 620
Query: 835 VFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLT 893
+I V+L+ +Q++ Y+ L+ + F + + + L + NHP +++
Sbjct: 621 ETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNV-PNLVNTMMELRKCCNHPYLIKGA 679
Query: 894 KDK 896
++K
Sbjct: 680 EEK 682
Score = 193 (73.0 bits), Expect = 7.1e-29, Sum P(2) = 7.1e-29
Identities = 53/146 (36%), Positives = 78/146 (53%)
Query: 941 KDWWNDLLHE-HTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKL 999
+D +N + H + +GK+VL+ +L G K L+FSQ + LD++E YL
Sbjct: 688 RDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYL--- 744
Query: 1000 PRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLH 1059
+ K+ + R+DGR + RQ ++RF++P + R L+ TRAG LGINL
Sbjct: 745 --------IHKRYL-YERIDGRVRGNLRQAAIDRFSKPDSDRF-VFLLCTRAGGLGINLT 794
Query: 1060 SANRVIIVDGSWNPTYDLQAIYRAWR 1085
+A+ II D WNP DLQA R R
Sbjct: 795 AADTCIIFDSDWNPQNDLQAQARCHR 820
>UNIPROTKB|E2R1M3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:AAEX03003895 EMBL:AAEX03003896 EMBL:AAEX03003897
Ensembl:ENSCAFT00000031086 Uniprot:E2R1M3
Length = 1812
Score = 206 (77.6 bits), Expect = 7.3e-29, Sum P(4) = 7.3e-29
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L + G + L+FSQ LDL+E +L +G + R+
Sbjct: 886 SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY------------EGYKYERI 933
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 934 DGGITGGLRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 992
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 993 AFSRAHR 999
Score = 204 (76.9 bits), Expect = 7.3e-29, Sum P(4) = 7.3e-29
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 580 QGTDTILADEMGLGKTVQTIVFLYSLYKEGH-SKGPYLVSAPLSTIINWEREFEMWAPDF 638
Query: 653 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 711
E S R E + A + G + + F + + I A
Sbjct: 639 YVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELIT-IDQA 697
Query: 712 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 769
+ + LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + +++F+
Sbjct: 698 ILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFL- 756
Query: 770 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD 829
+ F N + +E + + + ED +I ++ H L ++R+ +V K +
Sbjct: 757 -----TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADVFK-N 802
Query: 830 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFT--NDRVSNEKIRKSFFAGYQALAQIWNHP 887
+P KT ++ V+LS +Q++ YK F+ F N + ++ S L + NHP
Sbjct: 803 MPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQV--SLLNIMMDLKKCCNHP 859
Score = 63 (27.2 bits), Expect = 7.3e-29, Sum P(4) = 7.3e-29
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 365 KKMHVKDADCSEC----YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASC 420
KK + D D E YC C + +++ C +C + C+ + +A E + SC
Sbjct: 191 KKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKA---PEGKWSC 247
Query: 421 WQC 423
C
Sbjct: 248 PHC 250
Score = 49 (22.3 bits), Expect = 7.3e-29, Sum P(4) = 7.3e-29
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 102 WKFRSIITYRLCKVSGSVEEIEDVDGNSDDPFV-ADAIANEKELALSEEQRKKFRKVKEE 160
++F I R K S EE E + + D + + ++ +E AL ++ +++ RK K
Sbjct: 139 FRFGGISNKR--KKGSSSEEDEREESDLDSASIHSSSVRSEGSTALGKKSKRR-RKKKRI 195
Query: 161 DDAN 164
DD +
Sbjct: 196 DDGD 199
Score = 46 (21.3 bits), Expect = 7.3e-13, Sum P(4) = 7.3e-13
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 707 EICHALQDGPDILVCD 722
E C +DG ++L CD
Sbjct: 280 EFCRVCKDGGELLCCD 295
Score = 43 (20.2 bits), Expect = 7.6e-11, Sum P(3) = 7.6e-11
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 206 QDYCEVCQQGGEIILCD 222
Score = 42 (19.8 bits), Expect = 3.8e-28, Sum P(4) = 3.8e-28
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 20 GFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAAFGSK 64
G K+ SE +E SD++ S++ S SE A G K
Sbjct: 143 GISNKRKKGSSSEEDEREESDLDSASIHS--SSVRSEGSTALGKK 185
>UNIPROTKB|F1RIM3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:FP102454 Ensembl:ENSSSCT00000003736 Uniprot:F1RIM3
Length = 1723
Score = 206 (77.6 bits), Expect = 7.3e-29, Sum P(4) = 7.3e-29
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L + G + L+FSQ LDL+E +L +G + R+
Sbjct: 955 SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY------------EGYKYERI 1002
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1003 DGGITGGLRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1061
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1062 AFSRAHR 1068
Score = 204 (76.9 bits), Expect = 7.3e-29, Sum P(4) = 7.3e-29
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 649 QGTDTILADEMGLGKTVQTIVFLYSLYKEGH-SKGPYLVSAPLSTIINWEREFEMWAPDF 707
Query: 653 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 711
E S R E + A + G + + F + + I A
Sbjct: 708 YVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELIT-IDQA 766
Query: 712 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 769
+ + LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + +++F+
Sbjct: 767 ILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFL- 825
Query: 770 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD 829
+ F N + +E + + + ED +I ++ H L ++R+ +V K +
Sbjct: 826 -----TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADVFK-N 871
Query: 830 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFT--NDRVSNEKIRKSFFAGYQALAQIWNHP 887
+P KT ++ V+LS +Q++ YK F+ F N + ++ S L + NHP
Sbjct: 872 MPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQV--SLLNIMMDLKKCCNHP 928
Score = 63 (27.2 bits), Expect = 7.3e-29, Sum P(4) = 7.3e-29
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 365 KKMHVKDADCSEC----YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASC 420
KK + D D E YC C + +++ C +C + C+ + +A E + SC
Sbjct: 260 KKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKA---PEGKWSC 316
Query: 421 WQC 423
C
Sbjct: 317 PHC 319
Score = 48 (22.0 bits), Expect = 7.3e-29, Sum P(4) = 7.3e-29
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 120 EEIEDVDGNSDDPFVADAIANEKELA-LSEEQRKKFRKVKEEDD 162
E ED++ S+ +D N+K+ L +++ KK ++ K++DD
Sbjct: 9 ENEEDLEEKSESEG-SDYSPNKKKKKKLKDKKEKKAKRKKKDDD 51
Score = 47 (21.6 bits), Expect = 9.2e-29, Sum P(4) = 9.2e-29
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 114 KVSGSVEEIEDVDGNSDDPFV-ADAIANEKELALSEEQRKKFRKVKEEDDAN 164
K S EE E + + D + + ++ +E AL ++ +++ RK K DD +
Sbjct: 218 KKGSSSEEDEREESDFDSASIHSSSVRSECSAALGKKSKRR-RKKKRIDDGD 268
Score = 46 (21.3 bits), Expect = 7.3e-13, Sum P(4) = 7.3e-13
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 707 EICHALQDGPDILVCD 722
E C +DG ++L CD
Sbjct: 349 EFCRVCKDGGELLCCD 364
Score = 43 (20.2 bits), Expect = 8.1e-11, Sum P(3) = 8.1e-11
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 275 QDYCEVCQQGGEIILCD 291
>UNIPROTKB|F1SSZ2 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:FP102454 Ensembl:ENSSSCT00000019561 Uniprot:F1SSZ2
Length = 1667
Score = 206 (77.6 bits), Expect = 7.9e-29, Sum P(4) = 7.9e-29
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L + G + L+FSQ LDL+E +L +G + R+
Sbjct: 939 SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY------------EGYKYERI 986
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 987 DGGITGGLRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1045
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1046 AFSRAHR 1052
Score = 204 (76.9 bits), Expect = 7.9e-29, Sum P(4) = 7.9e-29
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 633 QGTDTILADEMGLGKTVQTIVFLYSLYKEGH-SKGPYLVSAPLSTIINWEREFEMWAPDF 691
Query: 653 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 711
E S R E + A + G + + F + + I A
Sbjct: 692 YVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELIT-IDQA 750
Query: 712 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 769
+ + LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + +++F+
Sbjct: 751 ILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFL- 809
Query: 770 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD 829
+ F N + +E + + + ED +I ++ H L ++R+ +V K +
Sbjct: 810 -----TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADVFK-N 855
Query: 830 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFT--NDRVSNEKIRKSFFAGYQALAQIWNHP 887
+P KT ++ V+LS +Q++ YK F+ F N + ++ S L + NHP
Sbjct: 856 MPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQV--SLLNIMMDLKKCCNHP 912
Score = 63 (27.2 bits), Expect = 7.9e-29, Sum P(4) = 7.9e-29
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 365 KKMHVKDADCSEC----YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASC 420
KK + D D E YC C + +++ C +C + C+ + +A E + SC
Sbjct: 244 KKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKA---PEGKWSC 300
Query: 421 WQC 423
C
Sbjct: 301 PHC 303
Score = 47 (21.6 bits), Expect = 7.9e-29, Sum P(4) = 7.9e-29
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 114 KVSGSVEEIEDVDGNSDDPFV-ADAIANEKELALSEEQRKKFRKVKEEDDAN 164
K S EE E + + D + + ++ +E AL ++ +++ RK K DD +
Sbjct: 202 KKGSSSEEDEREESDFDSASIHSSSVRSECSAALGKKSKRR-RKKKRIDDGD 252
Score = 46 (21.3 bits), Expect = 7.9e-13, Sum P(4) = 7.9e-13
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 707 EICHALQDGPDILVCD 722
E C +DG ++L CD
Sbjct: 333 EFCRVCKDGGELLCCD 348
Score = 43 (20.2 bits), Expect = 9.1e-11, Sum P(3) = 9.1e-11
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 259 QDYCEVCQQGGEIILCD 275
Score = 42 (19.8 bits), Expect = 2.6e-28, Sum P(4) = 2.6e-28
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 141 EKELALSEEQRKKFRKVKEEDD 162
+K+ L +++ KK ++ K++DD
Sbjct: 14 KKKKKLKDKKEKKAKRKKKDDD 35
>UNIPROTKB|Q8TDI0 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
EMBL:AF425231 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 OrthoDB:EOG4WH8JX
EMBL:AL035406 EMBL:AL117491 EMBL:AB007913 IPI:IPI00152535
PIR:T17269 RefSeq:NP_056372.1 UniGene:Hs.522898
ProteinModelPortal:Q8TDI0 SMR:Q8TDI0 IntAct:Q8TDI0 STRING:Q8TDI0
PhosphoSite:Q8TDI0 DMDM:51701343 PaxDb:Q8TDI0 PRIDE:Q8TDI0
DNASU:26038 Ensembl:ENST00000262450 GeneID:26038 KEGG:hsa:26038
UCSC:uc001amb.2 CTD:26038 GeneCards:GC01M006096 HGNC:HGNC:16816
HPA:HPA015809 MIM:610771 neXtProt:NX_Q8TDI0 PharmGKB:PA134969178
InParanoid:Q8TDI0 KO:K14435 OMA:KRIDDGD PhylomeDB:Q8TDI0
ChiTaRS:CHD5 GenomeRNAi:26038 NextBio:47863 ArrayExpress:Q8TDI0
Bgee:Q8TDI0 CleanEx:HS_CHD5 Genevestigator:Q8TDI0
GermOnline:ENSG00000116254 Uniprot:Q8TDI0
Length = 1954
Score = 206 (77.6 bits), Expect = 8.1e-29, Sum P(4) = 8.1e-29
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L + G + L+FSQ LDL+E +L +G + R+
Sbjct: 1023 SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY------------EGYKYERI 1070
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1071 DGGITGGLRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1129
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1130 AFSRAHR 1136
Score = 204 (76.9 bits), Expect = 8.1e-29, Sum P(4) = 8.1e-29
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 717 QGTDTILADEMGLGKTVQTIVFLYSLYKEGH-SKGPYLVSAPLSTIINWEREFEMWAPDF 775
Query: 653 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 711
E S R E + A + G + + F + + I A
Sbjct: 776 YVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELIT-IDQA 834
Query: 712 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 769
+ + LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + +++F+
Sbjct: 835 ILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFL- 893
Query: 770 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD 829
+ F N + +E + + + ED +I ++ H L ++R+ +V K +
Sbjct: 894 -----TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADVFK-N 939
Query: 830 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFT--NDRVSNEKIRKSFFAGYQALAQIWNHP 887
+P KT ++ V+LS +Q++ YK F+ F N + ++ S L + NHP
Sbjct: 940 MPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQV--SLLNIMMDLKKCCNHP 996
Score = 63 (27.2 bits), Expect = 8.1e-29, Sum P(4) = 8.1e-29
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 365 KKMHVKDADCSEC----YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASC 420
KK + D D E YC C + +++ C +C + C+ + +A E + SC
Sbjct: 328 KKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKA---PEGKWSC 384
Query: 421 WQC 423
C
Sbjct: 385 PHC 387
Score = 50 (22.7 bits), Expect = 8.1e-29, Sum P(4) = 8.1e-29
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 114 KVSGSVEEI----EDVDGNSDDPFVADAIANEKELA-LSEEQRKKF-RKVKEEDDANMD 166
K GS +E+ ED++ S+ +D N+K+ L +++ KK RK K+ED+ + D
Sbjct: 67 KKEGSNDELSENEEDLEEKSESEG-SDYSPNKKKKKKLKDKKEKKAKRKKKDEDEDDND 124
Score = 48 (22.0 bits), Expect = 1.3e-28, Sum P(4) = 1.3e-28
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 102 WKFRSIITYRLCKVSGSVEEIEDVDGNSDDPFVADA-IANEKELALSEEQRKKFRKVKEE 160
++F I R K S EE E + + D + A + +E AL ++ +++ RK K
Sbjct: 276 FRFGGISNKR--KKGSSSEEDEREESDFDSASIHSASVRSECSAALGKKSKRR-RKKKRI 332
Query: 161 DDAN 164
DD +
Sbjct: 333 DDGD 336
Score = 46 (21.3 bits), Expect = 8.1e-13, Sum P(4) = 8.1e-13
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 707 EICHALQDGPDILVCD 722
E C +DG ++L CD
Sbjct: 417 EFCRVCKDGGELLCCD 432
Score = 43 (20.2 bits), Expect = 7.7e-11, Sum P(3) = 7.7e-11
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 343 QDYCEVCQQGGEIILCD 359
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 253 (94.1 bits), Expect = 8.5e-29, Sum P(3) = 8.5e-29
Identities = 116/411 (28%), Positives = 178/411 (43%)
Query: 594 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 653
GL ILA MGLGKT Q IAFL + N G LIV P + + NW +E W P+ L
Sbjct: 515 GLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPH--LIVVPASTIDNWLREVNLWCPT-L 571
Query: 654 KPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 713
K L + ++ + R + +++ V + Y + S DR++ R + L
Sbjct: 572 KVLCYYGSQEERKQIRFNIHSRYEDYN-VIVTTYNCAISSS-----DDRSLFRRL--KL- 622
Query: 714 DGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-F 772
+ + DE HM+KN + Q L + R+ LTG+P+QNNL+E +++FV F
Sbjct: 623 ---NYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMF 679
Query: 773 LGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP 832
S+ E R F + ++ S E +I + + I K F+ R V K LPP
Sbjct: 680 SSSTSEIRRMFSSKTKSADE-QSIYEKERIAHAKQII-----KPFILRRVKEEVLKQLPP 733
Query: 833 KTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQL 892
K + +S Q +LY L L ++N + L ++ NHP + +
Sbjct: 734 KKDRIELCAMSEKQEQLY---LGLFNRLKKSINNLEKNTEMCNVMMQLRKMANHPLLHRQ 790
Query: 893 TKDKGYPSRXXXXXXXXXXNMDYNV-VIGEKPRNMNDF------LQGKNDDGFFQKDWWN 945
+ + N +I E M DF Q ++ + F Q D
Sbjct: 791 YYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNF-QLDM-- 847
Query: 946 DLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYL 996
DL+ LD SGK +L IL+ GD+ ++FSQ LD++E L
Sbjct: 848 DLI-------LD-SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLL 890
Score = 163 (62.4 bits), Expect = 8.5e-29, Sum P(3) = 8.5e-29
Identities = 52/130 (40%), Positives = 71/130 (54%)
Query: 956 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
LD SGK +L IL+ GD+ ++FSQ LD++E L Q + +
Sbjct: 851 LD-SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKH-----HQHR-------Y 897
Query: 1016 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1075
RLDG+T+ SER L++ FN ++ + L+ST+AG LGINL SAN VI+ D NP
Sbjct: 898 LRLDGKTQISERIHLIDEFNTDMD--IFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 955
Query: 1076 DLQAIYRAWR 1085
D QA R R
Sbjct: 956 DKQAEDRCHR 965
Score = 123 (48.4 bits), Expect = 5.3e-15, Sum P(3) = 5.3e-15
Identities = 43/145 (29%), Positives = 67/145 (46%)
Query: 534 EVLGDAITGYIVNVVREKGEEAVRIPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKSG 591
E + + +T + + G + PS + S LK +Q VG+ W ++
Sbjct: 463 EDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLN--WLALVHK------- 513
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
GL ILA MGLGKT Q IAFL + N G LIV P + + NW +E W P+
Sbjct: 514 -HGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPH--LIVVPASTIDNWLREVNLWCPT 570
Query: 652 ELKPLRVFMLEDVSRDRRAELLAKW 676
LK L + ++ + R + +++
Sbjct: 571 -LKVLCYYGSQEERKQIRFNIHSRY 594
Score = 46 (21.3 bits), Expect = 8.5e-29, Sum P(3) = 8.5e-29
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 287 IIIGSDEADVVKDECSTKLEDHSVSPENI 315
I + SD DVV CS +++ + + + +
Sbjct: 92 IDLSSDSEDVVSPNCSNTVQEKTFNKDTV 120
Score = 37 (18.1 bits), Expect = 7.2e-28, Sum P(3) = 7.2e-28
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 288 IIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLH 325
++ E D D S+ ED+S E + D LH
Sbjct: 354 VVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILH 391
Score = 37 (18.1 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 685 IGYTAFRNLSFGKHVKDRNMAREICHALQD 714
+G + + S G+ V + +I H LQD
Sbjct: 366 VGSSLDEDYSSGEEVMEDGYKGKILHFLQD 395
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 181 (68.8 bits), Expect = 8.7e-29, Sum P(3) = 8.7e-29
Identities = 59/201 (29%), Positives = 98/201 (48%)
Query: 694 SFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSP 753
SF +KDR + H + ++ DE H IKN + + L+Q + R+ LTG+P
Sbjct: 729 SFEYIIKDRKTLGRV-HWIY-----IIIDEGHRIKNKNSKLSVQLRQYHSRNRLLLTGTP 782
Query: 754 LQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIE-NGQHT-NSTSEDVKIMNQRSHILY 811
LQN+L E + +++F+ S+ F+N F P + G++ N E+ I+ R H
Sbjct: 783 LQNDLGELWALLNFLLPTIFNSADTFQNWFNAPFQAKGKNLINVNEEESLIIINRLH--- 839
Query: 812 EQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNE---- 867
+ L+ F+ R + V+ LP K VI +S LQ +Y+ ++ D S E
Sbjct: 840 QVLRFFLLRRLKSDVESQLPDKKEKVIKCNMSALQIAMYRSLVEYGVLPIDPDSKEGRSG 899
Query: 868 KIR-KSFFAGYQALAQIWNHP 887
+++ K F + L +I NHP
Sbjct: 900 RLKMKGFNNIVKQLQKICNHP 920
Score = 166 (63.5 bits), Expect = 8.7e-29, Sum P(3) = 8.7e-29
Identities = 48/127 (37%), Positives = 64/127 (50%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK + ILT + L+F+Q ++L+E Y S K W + RL
Sbjct: 937 SGKFDTMDQILTKMHASKHRVLIFTQMTEVINLMEEYFSL--------KEWT----FLRL 984
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T+ ER LV +N P + ++ST AG LG+NL +A+ VII D WNP DLQ
Sbjct: 985 DGSTKPEERAHLVVEWNRP-DSPFWIFVLSTHAGGLGMNLQTADTVIIFDSDWNPQMDLQ 1043
Query: 1079 AIYRAWR 1085
A R R
Sbjct: 1044 AQDRCHR 1050
Score = 125 (49.1 bits), Expect = 8.7e-29, Sum P(3) = 8.7e-29
Identities = 50/193 (25%), Positives = 84/193 (43%)
Query: 488 EET-KRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDA-----IT 541
E+T KR +E+E ++ + L + + N+ T S S + + IT
Sbjct: 535 EQTEKRARELEEELKQNEEQLNDHNGTNTNNNNTTTTTTTTSTTTSTSLSNEGQPIANIT 594
Query: 542 GYI---VNVVREKGEEAV-RIPSSISA-KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLG 596
+ ++ +K V P ++ KLK +QV G+ ++ + + L
Sbjct: 595 SPLQSTTTILAKKSNNLVIEQPDLMTGGKLKEYQVTGLEWL----------ISLYTRNLN 644
Query: 597 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPL 656
ILA MGLGKT Q IAF+ +N+ L+V P++ + NW EF +W P L
Sbjct: 645 GILADEMGLGKTVQTIAFISFLYERMNVR-EPFLVVAPLSTISNWVSEFARWSPK----L 699
Query: 657 RVFMLEDVSRDRR 669
V + + +RR
Sbjct: 700 HVIVYKGKQDERR 712
Score = 52 (23.4 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 26/125 (20%), Positives = 48/125 (38%)
Query: 635 VNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLS 694
+ +H + +E K L R+ +L+ + +LLAK + + L+G T S
Sbjct: 468 IKAIHRYHKEKEKREIERLSKERIRLLKARDTEGYRDLLAKTKNERLEMLLGETDSLLSS 527
Query: 695 FGKHV-KDRN--MAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTG 751
+ + K++ ARE+ L+ + L N TT ++ G
Sbjct: 528 IHQLMEKEQTEKRARELEEELKQNEEQLNDHNGTNTNNNNTTTTTTTTSTTTSTSLSNEG 587
Query: 752 SPLQN 756
P+ N
Sbjct: 588 QPIAN 592
Score = 37 (18.1 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 485 ELGEETKRKIAIEKERQERLKSLQ 508
EL + + +++E E Q ++S+Q
Sbjct: 366 ELQRKLRNDVSLEMEDQVLIRSIQ 389
>ZFIN|ZDB-GENE-030131-4532 [details] [associations]
symbol:chd4b "chromodomain helicase DNA binding
protein 4b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-030131-4532
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX511250
IPI:IPI00931161 RefSeq:XP_685699.4 UniGene:Dr.75373
Ensembl:ENSDART00000092902 Ensembl:ENSDART00000148389 GeneID:560622
KEGG:dre:560622 CTD:560622 NextBio:20883532 Uniprot:F1RBT2
Length = 1953
Score = 211 (79.3 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
Identities = 82/300 (27%), Positives = 135/300 (45%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q FLY+ + + L+ P++ + NW++EF W P
Sbjct: 753 QGTDTILADEMGLGKTVQTAVFLYSLYKEGH-SKGPFLVSAPLSTIINWEREFEMWAPDM 811
Query: 653 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 711
V + + R E + A +GG + F + + I A
Sbjct: 812 YVVTYVGDKDSRAVIRENEFTFEDNAIRGGKKASKMKKEAAVKFHVLLTSYELIT-IDQA 870
Query: 712 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 769
+ D LV DEAH +KN ++ + L Q ++ LTG+PLQNNL E + +++F+
Sbjct: 871 ILGSIDWACLVVDEAHRLKNNQSKFFRVLNNYPLQHKLLLTGTPLQNNLEELFHLLNFL- 929
Query: 770 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQL-KGFVQRMDMNVVKK 828
+ F N + +E + + ED +I L++ L ++R+ +V K
Sbjct: 930 -----TPERFNN-LEGFLE--EFADIAKED-QIKK-----LHDMLGPHMLRRLKADVFKH 975
Query: 829 DLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
+P KT ++ V+LSP+Q++ YK L + N R ++ S L + NHP
Sbjct: 976 -MPSKTELIVRVELSPMQKKYYKYILTRNFEALNTRGGGNQV--SLLNVVMDLKKCCNHP 1032
Score = 199 (75.1 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
Identities = 51/127 (40%), Positives = 69/127 (54%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1059 SGKLMLLFKMLKKLKEGGHRVLIFSQMTKMLDLLEDFLEN------------EGYKYERI 1106
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG RQ+ ++RFN P + L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1107 DGGVTGGMRQEAIDRFNAPGAPQF-VFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1165
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1166 AFSRAHR 1172
Score = 63 (27.2 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 357 KDCKCLLEKKMHVKDADCSEC----YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACL 412
K K +KK +DAD E YC C + +++ C +C + C+ ++ A
Sbjct: 352 KKAKSSKKKKKMDEDADGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMERA-- 409
Query: 413 SDEVQASCWQC 423
E SC C
Sbjct: 410 -PEGTWSCPHC 419
Score = 48 (22.0 bits), Expect = 3.8e-27, Sum P(3) = 3.8e-27
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 123 EDVDGNSD-DPF-VADAIANEKELALSEEQRKKFRKVKEEDDAN 164
E+ DG SD D F V+D + + +++ + +K K ++DA+
Sbjct: 325 EEDDGESDFDSFSVSDGSNSRSSRSKNKKAKSSKKKKKMDEDAD 368
Score = 47 (21.6 bits), Expect = 7.9e-12, Sum P(3) = 7.9e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 701 DRNMAREICHALQDGPDILVCD 722
D +M E C +DG ++L CD
Sbjct: 454 DHHM--EFCRVCKDGGELLCCD 473
Score = 43 (20.2 bits), Expect = 6.6e-10, Sum P(3) = 6.6e-10
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 375 QDYCEVCQQGGEIILCD 391
Score = 40 (19.1 bits), Expect = 2.2e-12, Sum P(3) = 2.2e-12
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 922 KPRNMNDFLQGKNDDGFFQKDWWND 946
KP N ND Q +D ++DW +D
Sbjct: 1347 KPVNYNDCSQ---EDRGSRRDWQDD 1368
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 259 (96.2 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
Identities = 120/412 (29%), Positives = 182/412 (44%)
Query: 594 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 653
GL ILA MGLGKT Q IAFL + N G LIV P + + NW +E W P+ L
Sbjct: 515 GLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPH--LIVVPASTIDNWLREVNLWCPT-L 571
Query: 654 KPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 713
K L + ++ + R + +K+ + V + Y + S DR++ R + L
Sbjct: 572 KVLCYYGSQEERKQIRYNIHSKYE-EYNVIVTTYNCAISSS-----DDRSLFRRL--KL- 622
Query: 714 DGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-F 772
+ + DE HM+KN + Q L + R+ LTG+P+QNNL+E +++FV F
Sbjct: 623 ---NYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMF 679
Query: 773 LGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP 832
S+ E R F + ++ S E +I + + I K F+ R V K LPP
Sbjct: 680 SSSTSEIRRMFSSKTKSADE-QSIYEKERIAHAKQII-----KPFILRRVKEEVLKQLPP 733
Query: 833 KTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSN-EKIRKSFFAGYQALAQIWNHPGILQ 891
K + +S Q +LY L L ++N EK + Q L ++ NHP + +
Sbjct: 734 KKDQIELCAMSEKQEQLY---LGLFNRLKKSINNIEKSTEMCNVMMQ-LRKMANHPLLHR 789
Query: 892 LTKDKGYPSRXXXXXXXXXXNMDYNV-VIGEKPRNMNDF------LQGKNDDGFFQKDWW 944
+ + N +I E M DF Q ++ + F Q D
Sbjct: 790 QYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNF-QLDM- 847
Query: 945 NDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYL 996
DL+ LD SGK +L IL+ GD+ ++FSQ LD++E L
Sbjct: 848 -DLI-------LD-SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLL 890
Score = 163 (62.4 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
Identities = 52/130 (40%), Positives = 71/130 (54%)
Query: 956 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
LD SGK +L IL+ GD+ ++FSQ LD++E L Q + +
Sbjct: 851 LD-SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKH-----HQHR-------Y 897
Query: 1016 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1075
RLDG+T+ SER L++ FN ++ + L+ST+AG LGINL SAN VI+ D NP
Sbjct: 898 LRLDGKTQISERIHLIDEFNTDMD--IFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 955
Query: 1076 DLQAIYRAWR 1085
D QA R R
Sbjct: 956 DKQAEDRCHR 965
Score = 127 (49.8 bits), Expect = 1.4e-14, Sum P(4) = 1.4e-14
Identities = 44/145 (30%), Positives = 67/145 (46%)
Query: 534 EVLGDAITGYIVNVVREKGEEAVRIPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKSG 591
E + + +T + + G + PS + S LK +Q VG+ W ++
Sbjct: 463 EDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLN--WLALVHK------- 513
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
GL ILA MGLGKT Q IAFL + N G LIV P + + NW +E W P+
Sbjct: 514 -HGLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPH--LIVVPASTIDNWLREVNLWCPT 570
Query: 652 ELKPLRVFMLEDVSRDRRAELLAKW 676
LK L + ++ + R + +K+
Sbjct: 571 -LKVLCYYGSQEERKQIRYNIHSKY 594
Score = 45 (20.9 bits), Expect = 1.4e-28, Sum P(4) = 1.4e-28
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 287 IIIGSDEADVVKDECSTKLEDHSVSPENI 315
I + SD D+V CS+ +++ + + +
Sbjct: 90 IDLSSDSEDIVSPNCSSTVQEKKFNKDTV 118
Score = 38 (18.4 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 288 IIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLH 325
+I E D D S+ ED+S E + D LH
Sbjct: 354 VIEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILH 391
Score = 37 (18.1 bits), Expect = 1.4e-28, Sum P(4) = 1.4e-28
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 483 DAELGEETKRKIAIEKERQERLKSLQVQFSSKSKL 517
DAE G KRK++ E E + Q K +L
Sbjct: 199 DAEGGGPRKRKLSSSSEPYEEDEFNDDQSIKKKRL 233
Score = 37 (18.1 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 685 IGYTAFRNLSFGKHVKDRNMAREICHALQD 714
+G + + S G+ V + +I H LQD
Sbjct: 366 VGSSLDEDYSSGEEVMEDGYKGKILHFLQD 395
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 259 (96.2 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
Identities = 120/412 (29%), Positives = 182/412 (44%)
Query: 594 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 653
GL ILA MGLGKT Q IAFL + N G LIV P + + NW +E W P+ L
Sbjct: 515 GLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPH--LIVVPASTIDNWLREVNLWCPT-L 571
Query: 654 KPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 713
K L + ++ + R + +K+ + V + Y + S DR++ R + L
Sbjct: 572 KVLCYYGSQEERKQIRYNIHSKYE-EYNVIVTTYNCAISSS-----DDRSLFRRL--KL- 622
Query: 714 DGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-F 772
+ + DE HM+KN + Q L + R+ LTG+P+QNNL+E +++FV F
Sbjct: 623 ---NYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMF 679
Query: 773 LGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP 832
S+ E R F + ++ S E +I + + I K F+ R V K LPP
Sbjct: 680 SSSTSEIRRMFSSKTKSADE-QSIYEKERIAHAKQII-----KPFILRRVKEEVLKQLPP 733
Query: 833 KTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSN-EKIRKSFFAGYQALAQIWNHPGILQ 891
K + +S Q +LY L L ++N EK + Q L ++ NHP + +
Sbjct: 734 KKDQIELCAMSEKQEQLY---LGLFNRLKKSINNIEKSTEMCNVMMQ-LRKMANHPLLHR 789
Query: 892 LTKDKGYPSRXXXXXXXXXXNMDYNV-VIGEKPRNMNDF------LQGKNDDGFFQKDWW 944
+ + N +I E M DF Q ++ + F Q D
Sbjct: 790 QYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNF-QLDM- 847
Query: 945 NDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYL 996
DL+ LD SGK +L IL+ GD+ ++FSQ LD++E L
Sbjct: 848 -DLI-------LD-SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLL 890
Score = 163 (62.4 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
Identities = 52/130 (40%), Positives = 71/130 (54%)
Query: 956 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
LD SGK +L IL+ GD+ ++FSQ LD++E L Q + +
Sbjct: 851 LD-SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKH-----HQHR-------Y 897
Query: 1016 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1075
RLDG+T+ SER L++ FN ++ + L+ST+AG LGINL SAN VI+ D NP
Sbjct: 898 LRLDGKTQISERIHLIDEFNTDMD--IFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 955
Query: 1076 DLQAIYRAWR 1085
D QA R R
Sbjct: 956 DKQAEDRCHR 965
Score = 127 (49.8 bits), Expect = 1.4e-14, Sum P(4) = 1.4e-14
Identities = 44/145 (30%), Positives = 67/145 (46%)
Query: 534 EVLGDAITGYIVNVVREKGEEAVRIPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKSG 591
E + + +T + + G + PS + S LK +Q VG+ W ++
Sbjct: 463 EDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLN--WLALVHK------- 513
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
GL ILA MGLGKT Q IAFL + N G LIV P + + NW +E W P+
Sbjct: 514 -HGLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPH--LIVVPASTIDNWLREVNLWCPT 570
Query: 652 ELKPLRVFMLEDVSRDRRAELLAKW 676
LK L + ++ + R + +K+
Sbjct: 571 -LKVLCYYGSQEERKQIRYNIHSKY 594
Score = 45 (20.9 bits), Expect = 1.4e-28, Sum P(4) = 1.4e-28
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 287 IIIGSDEADVVKDECSTKLEDHSVSPENI 315
I + SD D+V CS+ +++ + + +
Sbjct: 88 IDLSSDSEDIVSPNCSSTVQEKKFNKDTV 116
Score = 38 (18.4 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 288 IIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLH 325
+I E D D S+ ED+S E + D LH
Sbjct: 354 VIEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILH 391
Score = 37 (18.1 bits), Expect = 1.4e-28, Sum P(4) = 1.4e-28
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 483 DAELGEETKRKIAIEKERQERLKSLQVQFSSKSKL 517
DAE G KRK++ E E + Q K +L
Sbjct: 199 DAEGGGPRKRKLSSSSEPYEEDEFNDDQSIKKKRL 233
Score = 37 (18.1 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 685 IGYTAFRNLSFGKHVKDRNMAREICHALQD 714
+G + + S G+ V + +I H LQD
Sbjct: 366 VGSSLDEDYSSGEEVMEDGYKGKILHFLQD 395
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 259 (96.2 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
Identities = 120/412 (29%), Positives = 182/412 (44%)
Query: 594 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 653
GL ILA MGLGKT Q IAFL + N G LIV P + + NW +E W P+ L
Sbjct: 515 GLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPH--LIVVPASTIDNWLREVNLWCPT-L 571
Query: 654 KPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 713
K L + ++ + R + +K+ + V + Y + S DR++ R + L
Sbjct: 572 KVLCYYGSQEERKQIRYNIHSKYE-EYNVIVTTYNCAISSS-----DDRSLFRRL--KL- 622
Query: 714 DGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-F 772
+ + DE HM+KN + Q L + R+ LTG+P+QNNL+E +++FV F
Sbjct: 623 ---NYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMF 679
Query: 773 LGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP 832
S+ E R F + ++ S E +I + + I K F+ R V K LPP
Sbjct: 680 SSSTSEIRRMFSSKTKSADE-QSIYEKERIAHAKQII-----KPFILRRVKEEVLKQLPP 733
Query: 833 KTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSN-EKIRKSFFAGYQALAQIWNHPGILQ 891
K + +S Q +LY L L ++N EK + Q L ++ NHP + +
Sbjct: 734 KKDQIELCAMSEKQEQLY---LGLFNRLKKSINNIEKSTEMCNVMMQ-LRKMANHPLLHR 789
Query: 892 LTKDKGYPSRXXXXXXXXXXNMDYNV-VIGEKPRNMNDF------LQGKNDDGFFQKDWW 944
+ + N +I E M DF Q ++ + F Q D
Sbjct: 790 QYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNF-QLDM- 847
Query: 945 NDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYL 996
DL+ LD SGK +L IL+ GD+ ++FSQ LD++E L
Sbjct: 848 -DLI-------LD-SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLL 890
Score = 163 (62.4 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
Identities = 52/130 (40%), Positives = 71/130 (54%)
Query: 956 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
LD SGK +L IL+ GD+ ++FSQ LD++E L Q + +
Sbjct: 851 LD-SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKH-----HQHR-------Y 897
Query: 1016 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1075
RLDG+T+ SER L++ FN ++ + L+ST+AG LGINL SAN VI+ D NP
Sbjct: 898 LRLDGKTQISERIHLIDEFNTDMD--IFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 955
Query: 1076 DLQAIYRAWR 1085
D QA R R
Sbjct: 956 DKQAEDRCHR 965
Score = 127 (49.8 bits), Expect = 1.4e-14, Sum P(4) = 1.4e-14
Identities = 44/145 (30%), Positives = 67/145 (46%)
Query: 534 EVLGDAITGYIVNVVREKGEEAVRIPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKSG 591
E + + +T + + G + PS + S LK +Q VG+ W ++
Sbjct: 463 EDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLN--WLALVHK------- 513
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
GL ILA MGLGKT Q IAFL + N G LIV P + + NW +E W P+
Sbjct: 514 -HGLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPH--LIVVPASTIDNWLREVNLWCPT 570
Query: 652 ELKPLRVFMLEDVSRDRRAELLAKW 676
LK L + ++ + R + +K+
Sbjct: 571 -LKVLCYYGSQEERKQIRYNIHSKY 594
Score = 45 (20.9 bits), Expect = 1.4e-28, Sum P(4) = 1.4e-28
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 287 IIIGSDEADVVKDECSTKLEDHSVSPENI 315
I + SD D+V CS+ +++ + + +
Sbjct: 90 IDLSSDSEDIVSPNCSSTVQEKKFNKDTV 118
Score = 38 (18.4 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 288 IIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLH 325
+I E D D S+ ED+S E + D LH
Sbjct: 354 VIEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILH 391
Score = 37 (18.1 bits), Expect = 1.4e-28, Sum P(4) = 1.4e-28
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 483 DAELGEETKRKIAIEKERQERLKSLQVQFSSKSKL 517
DAE G KRK++ E E + Q K +L
Sbjct: 199 DAEGGGPRKRKLSSSSEPYEEDEFNDDQSIKKKRL 233
Score = 37 (18.1 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 685 IGYTAFRNLSFGKHVKDRNMAREICHALQD 714
+G + + S G+ V + +I H LQD
Sbjct: 366 VGSSLDEDYSSGEEVMEDGYKGKILHFLQD 395
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 276 (102.2 bits), Expect = 1.4e-28, Sum P(3) = 1.4e-28
Identities = 105/383 (27%), Positives = 177/383 (46%)
Query: 482 DDAELGEETKRKIAIEKERQERLKSLQVQFSSKS---KLMNSVTLDGDLSA--GASIEVL 536
++ E + + K EK+ +E LKS ++ + K+ +L+ + T D D++ ++ E
Sbjct: 1055 EEEEESSDDEGKTEQEKKEEEELKSEALKKTQKAIELQLLKTKTFDRDVNKIKNSATEGG 1114
Query: 537 GDAITGYIV--NVVREKGEEAVRIPSSI------SAKLKAHQVVGIRFMWENIIQSIRKV 588
G+ I + + + G + + SSI + LK ++ + V
Sbjct: 1115 GETIPESLAVSDKMMVDGLPMIDMNSSIPPGFSTADTLKQPTILNADLKPYQLKGMTWIV 1174
Query: 589 KSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW 648
D+G+ ILA MGLGKT Q IA L N+ LIVTP + LHNWK EF K+
Sbjct: 1175 NLYDQGINGILADEMGLGKTIQSIAVLAHLAEEKNIW-GPFLIVTPKSTLHNWKNEFAKF 1233
Query: 649 RPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREI 708
P+ K + + ++ +R + W K + F L +V R+ +
Sbjct: 1234 VPA-FKVIPYWG----TQQQRTTIRKYWNPKK--LYHRNSPFHVLITSYNVIVRD--EKY 1284
Query: 709 CHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFV 768
H L+ +V DEAH IK++ ++ + L C+ R+ LTG+P+QN++ E + ++ F+
Sbjct: 1285 FHRLRW--QYMVLDEAHAIKSSASNRWKTLMSFNCRNRLLLTGTPIQNSMAELWALLHFI 1342
Query: 769 REGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKK 828
F S EF F IEN H S + R H++ LK F+ R V+
Sbjct: 1343 MPTFFDSHDEFAEWFSKDIEN--HAMSQGGLNEHQLNRLHMI---LKPFMLRRIKRDVEN 1397
Query: 829 DLPPKTVFVITVKLSPLQRRLYK 851
++P KT + L+ Q++LY+
Sbjct: 1398 EMPSKTEVEVYCNLTHRQKKLYQ 1420
Score = 158 (60.7 bits), Expect = 1.4e-28, Sum P(3) = 1.4e-28
Identities = 45/132 (34%), Positives = 73/132 (55%)
Query: 954 KELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1013
K L+ SGK+ +L +L G + L++SQ ++++E ++ +++K K
Sbjct: 1761 KSLNDSGKLQVLDKLLKDLKVGGHRVLIYSQFTKMINILEDFM-----------IFRKYK 1809
Query: 1014 DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNP 1073
+ RLDG ++ +R+ +V+ F + + L+STRA +GINL SA+ VI D WNP
Sbjct: 1810 -YLRLDGSSKLDDRRDMVDDFQS--DPSIFAFLLSTRACGIGINLTSADTVIFYDSDWNP 1866
Query: 1074 TYDLQAIYRAWR 1085
T D QA RA R
Sbjct: 1867 TVDEQAQDRAHR 1878
Score = 47 (21.6 bits), Expect = 5.7e-05, Sum P(3) = 5.7e-05
Identities = 24/133 (18%), Positives = 53/133 (39%)
Query: 120 EEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDXXXXXXXXXXXXX 179
++++D P ++ N ++ EQ KK ++ ++DD
Sbjct: 1009 KKLDDPSSGDATPATIGSLMNGSQMPT--EQNKKIKEKNDQDDNESSSEEEEESSDDEGK 1066
Query: 180 XISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLE 239
++KE + ++ +T+ ++ L KT D D+ N ET + E
Sbjct: 1067 TEQEKKEEEELK---SEALKKTQKAIELQ--LLKTKTFDRDVNKIKNSATEGGGET-IPE 1120
Query: 240 S-SVKERSLSNGI 251
S +V ++ + +G+
Sbjct: 1121 SLAVSDKMMVDGL 1133
Score = 42 (19.8 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 483 DAELGEETKRKIAIE--KERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 540
+ E + KR+ ++ K +Q +L L Q S M S LD S A+ +G +
Sbjct: 970 EKEEANQRKREEEVQEAKRQQRKLNFLISQTELYSHFM-SKKLDDPSSGDATPATIGSLM 1028
Query: 541 TG 542
G
Sbjct: 1029 NG 1030
Score = 38 (18.4 bits), Expect = 5.7e-05, Sum P(3) = 5.7e-05
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 292 DEADVVKDECSTKLEDHSVSPENINDAATDNSLH 325
D D + S +E+H++S +N+ N LH
Sbjct: 1348 DSHDEFAEWFSKDIENHAMSQGGLNEHQL-NRLH 1380
Score = 37 (18.1 bits), Expect = 1.4e-28, Sum P(3) = 1.4e-28
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 197 SAVETRPLVDASKSLSNKKTDDGDMPGNNN 226
S+ ++R D + S SN ++ + NNN
Sbjct: 289 SSRDSRSDRDRTSSSSNNNNNNNNNNNNNN 318
Score = 37 (18.1 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 221 MPGNNNEVALQNL-ETGVL 238
+P ++N++ L NL E G L
Sbjct: 1723 LPPSSNQIVLDNLKENGGL 1741
>WB|WBGene00004204 [details] [associations]
symbol:swsn-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006355
GO:GO:0003677 GO:GO:0040035 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 OMA:QKKYTIS InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488
RefSeq:NP_502082.1 UniGene:Cel.23435 ProteinModelPortal:G5EF53
SMR:G5EF53 EnsemblMetazoa:F01G4.1 GeneID:178015
KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 NextBio:899366
Uniprot:G5EF53
Length = 1474
Score = 174 (66.3 bits), Expect = 1.4e-28, Sum P(3) = 1.4e-28
Identities = 48/132 (36%), Positives = 72/132 (54%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
+GK+ LL IL G + L+F Q +++ E +L+ +++ + RL
Sbjct: 849 AGKLELLDRILPKLKATGHRILMFFQMTSMMNIFEDFLN-----------FRR-YTYLRL 896
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T+ ER L+ +FN P N + ++STRAG LG+NL +A+ VII D WNP D+Q
Sbjct: 897 DGSTKPDERGDLLTQFNAP-NSDLFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQ 955
Query: 1079 AIYRAWRCMDKQ 1090
A RA R K+
Sbjct: 956 AQDRAHRIGQKK 967
Score = 164 (62.8 bits), Expect = 1.4e-28, Sum P(3) = 1.4e-28
Identities = 50/179 (27%), Positives = 78/179 (43%)
Query: 719 LVCDEAHMIKNTRADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN T L Q R+ LTG+PLQN L E + +++F+ S
Sbjct: 657 MIIDEGHRLKNHNCKLTLMLNGFFHAQHRLLLTGTPLQNKLPELWALLNFLLPSIFSSCG 716
Query: 778 EFRNRFQNPIEN-GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ E+ ++ +R H + L+ F+ R V+ LP KT +
Sbjct: 717 TFEQWFNAPFATTGEKVELNQEETMLIIRRLH---KVLRPFLLRRLKKEVESQLPDKTEY 773
Query: 837 VITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKD 895
VI S LQ+ +Y+ G D + R S L ++ NHP + +D
Sbjct: 774 VIKCDQSALQKVIYRHMQK--GLLLDAKMSSGAR-SLMNTVVHLRKLCNHPFLFPNIED 829
Score = 131 (51.2 bits), Expect = 1.4e-28, Sum P(3) = 1.4e-28
Identities = 45/173 (26%), Positives = 77/173 (44%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 540
L D E EE + + E+E+ ++ + + +K L + + + ++
Sbjct: 449 LSDDEEEEEEEAPVEPEEEKDDQYAGMDEETKAKMILEKARNEEDEYDQKTKKQMADYYA 508
Query: 541 TGYIVN--VVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCI 598
T + + VV++ P+ + LK +Q+ G+ +M V + L I
Sbjct: 509 TAHKIKEKVVKQHTTMGGGDPNLL---LKPYQIKGLEWM----------VSLYNNNLNGI 555
Query: 599 LAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
LA MGLGKT Q I+ L T + V L++ P++ L NW+ EF KW PS
Sbjct: 556 LADEMGLGKTIQTIS-LVTYLMEVKQNNGPYLVIVPLSTLSNWQNEFAKWAPS 607
Score = 39 (18.8 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 93 DFSSNCPNMWKFRSIITYRLCKVSGSVEEIEDV 125
+ +C WK + L +V+G +E ++ +
Sbjct: 826 NIEDSCRAYWKVNEVNGTDLMRVAGKLELLDRI 858
Score = 38 (18.4 bits), Expect = 5.4e-19, Sum P(3) = 5.4e-19
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 481 LDDAELGEETKRKIAIEKERQERLK 505
L +A + E+ +++ +E+ER+ R K
Sbjct: 259 LREARVTEKLEKQQKMEQERKRRQK 283
Score = 37 (18.1 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 1010 KKGKDWYRLDGRTESSERQKLVERFNEPLNKRVK 1043
KK K+ + E E ++++ + EP + R K
Sbjct: 1423 KKKKESEDSEDPMEEDEEEEIIGQKKEPASSRRK 1456
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 260 (96.6 bits), Expect = 1.4e-28, Sum P(4) = 1.4e-28
Identities = 117/411 (28%), Positives = 179/411 (43%)
Query: 594 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 653
GL ILA MGLGKT Q IAFL + N G LIV P + + NW +E W P+ L
Sbjct: 518 GLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPH--LIVVPASTIDNWLREVNLWCPT-L 574
Query: 654 KPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 713
K L + ++ + R + +K+ + V + Y + S DR++ R + L
Sbjct: 575 KVLCYYGSQEERKQIRYNIHSKYE-EYNVIVTTYNCAISSS-----DDRSLFRRL--KL- 625
Query: 714 DGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-F 772
+ + DE HM+KN + Q L + R+ LTG+P+QNNL+E +++FV F
Sbjct: 626 ---NYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMF 682
Query: 773 LGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP 832
S+ E R F + ++ S E +I + + I K F+ R V K LPP
Sbjct: 683 SSSTSEIRRMFSSKTKSADE-QSIYEKERIAHAKQII-----KPFILRRVKEEVLKQLPP 736
Query: 833 KTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQL 892
K + +S Q +LY L L ++N + L ++ NHP + +
Sbjct: 737 KKDQIELCAMSEKQEQLY---LGLFNRLKKSINNMEKNTEMCNVMMQLRKMANHPLLHRQ 793
Query: 893 TKDKGYPSRXXXXXXXXXXNMDYNV-VIGEKPRNMNDF------LQGKNDDGFFQKDWWN 945
+ + N +I E M DF Q ++ + F Q D
Sbjct: 794 YYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNF-QLDM-- 850
Query: 946 DLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYL 996
DL+ LD SGK +L IL+ GD+ ++FSQ LD++E L
Sbjct: 851 DLI-------LD-SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLL 893
Score = 163 (62.4 bits), Expect = 1.4e-28, Sum P(4) = 1.4e-28
Identities = 52/130 (40%), Positives = 71/130 (54%)
Query: 956 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
LD SGK +L IL+ GD+ ++FSQ LD++E L Q + +
Sbjct: 854 LD-SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKH-----HQHR-------Y 900
Query: 1016 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1075
RLDG+T+ SER L++ FN ++ + L+ST+AG LGINL SAN VI+ D NP
Sbjct: 901 LRLDGKTQISERIHLIDEFNTDMD--IFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 958
Query: 1076 DLQAIYRAWR 1085
D QA R R
Sbjct: 959 DKQAEDRCHR 968
Score = 127 (49.8 bits), Expect = 1.8e-14, Sum P(4) = 1.8e-14
Identities = 44/145 (30%), Positives = 67/145 (46%)
Query: 534 EVLGDAITGYIVNVVREKGEEAVRIPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKSG 591
E + + +T + + G + PS + S LK +Q VG+ W ++
Sbjct: 466 EDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLN--WLALVHK------- 516
Query: 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
GL ILA MGLGKT Q IAFL + N G LIV P + + NW +E W P+
Sbjct: 517 -HGLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPH--LIVVPASTIDNWLREVNLWCPT 573
Query: 652 ELKPLRVFMLEDVSRDRRAELLAKW 676
LK L + ++ + R + +K+
Sbjct: 574 -LKVLCYYGSQEERKQIRYNIHSKY 597
Score = 44 (20.5 bits), Expect = 1.4e-28, Sum P(4) = 1.4e-28
Identities = 6/29 (20%), Positives = 16/29 (55%)
Query: 287 IIIGSDEADVVKDECSTKLEDHSVSPENI 315
I + SD D++ CS+ +++ + + +
Sbjct: 93 IDLSSDSEDIISPNCSSTVQEKKFNKDTV 121
Score = 38 (18.4 bits), Expect = 5.9e-28, Sum P(4) = 5.9e-28
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 288 IIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLH 325
+I E D D S+ ED+S E + D LH
Sbjct: 357 VIEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILH 394
Score = 37 (18.1 bits), Expect = 1.4e-28, Sum P(4) = 1.4e-28
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 483 DAELGEETKRKIAIEKERQERLKSLQVQFSSKSKL 517
DAE G KRK++ E E + Q K +L
Sbjct: 202 DAEGGGPRKRKLSSSSEPYEEDEFNDDQSIKKKRL 236
Score = 37 (18.1 bits), Expect = 5.9e-28, Sum P(4) = 5.9e-28
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 22 LQKKIANDGSENGGKEVSDINWNSVNKI 49
++KK + G E+ S NW I
Sbjct: 231 IKKKRLDHGEESNESAESSSNWEKQESI 258
Score = 37 (18.1 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 685 IGYTAFRNLSFGKHVKDRNMAREICHALQD 714
+G + + S G+ V + +I H LQD
Sbjct: 369 VGSSLDEDYSSGEEVMEDGYKGKILHFLQD 398
>UNIPROTKB|F1LPP7 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 IPI:IPI00369880
Ensembl:ENSRNOT00000057060 Uniprot:F1LPP7
Length = 2020
Score = 215 (80.7 bits), Expect = 1.7e-28, Sum P(4) = 1.7e-28
Identities = 98/362 (27%), Positives = 157/362 (43%)
Query: 534 EVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDK 593
E+ GD N K E R ++ L +Q+ G+ W S +
Sbjct: 755 EIQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLN--WLRF--------SWAQ 804
Query: 594 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 653
G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 805 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTK-GPFLVSAPLSTIINWEREFQMWAP--- 860
Query: 654 KPLRVFMLEDVSRDRRAELLA-KWRAKGGVFLIGYTAF---RNLSFGKHVKDRNMAREIC 709
K V D +D RA + ++ + G AF R HV +
Sbjct: 861 KFYVVTYTGD--KDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITI 918
Query: 710 HALQDGP---DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVD 766
G LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + +++
Sbjct: 919 DQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLN 978
Query: 767 FVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVV 826
F+ + F N + +E + + + ED +I ++ H L ++R+ +V
Sbjct: 979 FL------TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADVF 1024
Query: 827 KKDLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWN 885
K ++P KT ++ V+LSP+Q++ YK L + N R ++ S L + N
Sbjct: 1025 K-NMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV--SLLNIMMDLKKCCN 1081
Query: 886 HP 887
HP
Sbjct: 1082 HP 1083
Score = 209 (78.6 bits), Expect = 1.7e-28, Sum P(4) = 1.7e-28
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1110 SGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY------------EGYKYERI 1157
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1158 DGGITGALRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQ 1216
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1217 AFSRAHR 1223
Score = 55 (24.4 bits), Expect = 1.7e-28, Sum P(4) = 1.7e-28
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 423
YC C + +++ C +C + C+ + A E + SC C
Sbjct: 433 YCEVCQQGGEIILCDTCPRAYHLVCLDPELDRA---PEGKWSCPHC 475
Score = 48 (22.0 bits), Expect = 1.4e-11, Sum P(4) = 1.4e-11
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 697 KHVKDRNMAREICHALQDGPDILVCD 722
K +D +M E C +DG ++L CD
Sbjct: 500 KEEEDDHM--EYCRVCKDGGELLCCD 523
Score = 46 (21.3 bits), Expect = 1.4e-27, Sum P(4) = 1.4e-27
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLK 432
YC C +L+ C +C + + C+ + + + W C C+ +LK
Sbjct: 509 YCRVCKDGGELLCCDACISSYHIHCLNPPLPD------IPNGEWLCPRCTCPVLK 557
Score = 43 (20.2 bits), Expect = 3.4e-10, Sum P(3) = 3.4e-10
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 431 QDYCEVCQQGGEIILCD 447
Score = 41 (19.5 bits), Expect = 1.7e-28, Sum P(4) = 1.7e-28
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 136 DAIANEKELALSEEQRKKFRKVKEEDD 162
D E+E+ +SEE+ ++ + EE++
Sbjct: 3 DEEEEEEEMVVSEEEEEEEEEGDEEEE 29
Score = 37 (18.1 bits), Expect = 3.7e-27, Sum P(4) = 3.7e-27
Identities = 21/92 (22%), Positives = 37/92 (40%)
Query: 12 KLLEEGASGFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAAFGSKHWASVYL 71
K L+ G G +KK+ + G +EV + + ++ D E C G + L
Sbjct: 397 KKLKRGRPGRKKKKVLGCPTVTGEEEVD--GYETDHQ----DYCEVCQQGGE-----IIL 445
Query: 72 ASTPQQAAAMGLKFPGVDEVTDFSSNCPNMWK 103
T +A + P +D + +CP+ K
Sbjct: 446 CDTCPRAYHLVCLDPELDRAPEGKWSCPHCEK 477
Score = 37 (18.1 bits), Expect = 4.2e-11, Sum P(4) = 4.2e-11
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1003 GKQGKLWKKGKDWYRLDG 1020
GK ++W + D++ L G
Sbjct: 1752 GKLNEIWHRRHDYWLLAG 1769
>UNIPROTKB|F1M7Q0 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR
IPI:IPI00959834 Ensembl:ENSRNOT00000012983 Uniprot:F1M7Q0
Length = 2054
Score = 215 (80.7 bits), Expect = 1.9e-28, Sum P(4) = 1.9e-28
Identities = 98/362 (27%), Positives = 157/362 (43%)
Query: 534 EVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDK 593
E+ GD N K E R ++ L +Q+ G+ W S +
Sbjct: 755 EIQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLN--WLRF--------SWAQ 804
Query: 594 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 653
G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 805 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTK-GPFLVSAPLSTIINWEREFQMWAP--- 860
Query: 654 KPLRVFMLEDVSRDRRAELLA-KWRAKGGVFLIGYTAF---RNLSFGKHVKDRNMAREIC 709
K V D +D RA + ++ + G AF R HV +
Sbjct: 861 KFYVVTYTGD--KDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITI 918
Query: 710 HALQDGP---DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVD 766
G LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + +++
Sbjct: 919 DQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLN 978
Query: 767 FVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVV 826
F+ + F N + +E + + + ED +I ++ H L ++R+ +V
Sbjct: 979 FL------TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADVF 1024
Query: 827 KKDLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWN 885
K ++P KT ++ V+LSP+Q++ YK L + N R ++ S L + N
Sbjct: 1025 K-NMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV--SLLNIMMDLKKCCN 1081
Query: 886 HP 887
HP
Sbjct: 1082 HP 1083
Score = 209 (78.6 bits), Expect = 1.9e-28, Sum P(4) = 1.9e-28
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1110 SGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY------------EGYKYERI 1157
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1158 DGGITGALRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQ 1216
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1217 AFSRAHR 1223
Score = 55 (24.4 bits), Expect = 1.9e-28, Sum P(4) = 1.9e-28
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 423
YC C + +++ C +C + C+ + A E + SC C
Sbjct: 433 YCEVCQQGGEIILCDTCPRAYHLVCLDPELDRA---PEGKWSCPHC 475
Score = 48 (22.0 bits), Expect = 1.5e-11, Sum P(4) = 1.5e-11
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 697 KHVKDRNMAREICHALQDGPDILVCD 722
K +D +M E C +DG ++L CD
Sbjct: 500 KEEEDDHM--EYCRVCKDGGELLCCD 523
Score = 46 (21.3 bits), Expect = 1.6e-27, Sum P(4) = 1.6e-27
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLK 432
YC C +L+ C +C + + C+ + + + W C C+ +LK
Sbjct: 509 YCRVCKDGGELLCCDACISSYHIHCLNPPLPD------IPNGEWLCPRCTCPVLK 557
Score = 43 (20.2 bits), Expect = 3.6e-10, Sum P(3) = 3.6e-10
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 431 QDYCEVCQQGGEIILCD 447
Score = 41 (19.5 bits), Expect = 1.9e-28, Sum P(4) = 1.9e-28
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 136 DAIANEKELALSEEQRKKFRKVKEEDD 162
D E+E+ +SEE+ ++ + EE++
Sbjct: 3 DEEEEEEEMVVSEEEEEEEEEGDEEEE 29
Score = 37 (18.1 bits), Expect = 4.0e-27, Sum P(4) = 4.0e-27
Identities = 21/92 (22%), Positives = 37/92 (40%)
Query: 12 KLLEEGASGFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAAFGSKHWASVYL 71
K L+ G G +KK+ + G +EV + + ++ D E C G + L
Sbjct: 397 KKLKRGRPGRKKKKVLGCPTVTGEEEVD--GYETDHQ----DYCEVCQQGGE-----IIL 445
Query: 72 ASTPQQAAAMGLKFPGVDEVTDFSSNCPNMWK 103
T +A + P +D + +CP+ K
Sbjct: 446 CDTCPRAYHLVCLDPELDRAPEGKWSCPHCEK 477
Score = 37 (18.1 bits), Expect = 4.5e-11, Sum P(4) = 4.5e-11
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1003 GKQGKLWKKGKDWYRLDG 1020
GK ++W + D++ L G
Sbjct: 1786 GKLNEIWHRRHDYWLLAG 1803
>UNIPROTKB|E9PG89 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006333 "chromatin assembly or
disassembly" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IDA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 GO:GO:0045111
GO:GO:0006333 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 RefSeq:NP_001005271.2 UniGene:Hs.25601 GeneID:1107
KEGG:hsa:1107 HGNC:HGNC:1918 KO:K11642 ChiTaRS:CHD3 GenomeRNAi:1107
NextBio:4590 EMBL:AC104581 IPI:IPI00465222
ProteinModelPortal:E9PG89 SMR:E9PG89 PRIDE:E9PG89
Ensembl:ENST00000380358 UCSC:uc002gjd.2 OMA:EPEPGYR
ArrayExpress:E9PG89 Bgee:E9PG89 Uniprot:E9PG89
Length = 2059
Score = 213 (80.0 bits), Expect = 1.9e-28, Sum P(4) = 1.9e-28
Identities = 86/303 (28%), Positives = 139/303 (45%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 812 QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTK-GPFLVSAPLSTIINWEREFQMWAP-- 868
Query: 653 LKPLRVFMLEDVSRDRRAELLA-KWRAKGGVFLIGYTAF---RNLSFGKHVKDRNMAREI 708
K V D +D RA + ++ + G AF R HV +
Sbjct: 869 -KFYVVTYTGD--KDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELIT 925
Query: 709 CHALQDGP---DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMV 765
G LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + ++
Sbjct: 926 IDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLL 985
Query: 766 DFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 825
+F+ + F N + +E + + + ED +I ++ H L ++R+ +V
Sbjct: 986 NFL------TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADV 1031
Query: 826 VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIW 884
K ++P KT ++ V+LSP+Q++ YK L + N R ++ S L +
Sbjct: 1032 FK-NMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV--SLLNIMMDLKKCC 1088
Query: 885 NHP 887
NHP
Sbjct: 1089 NHP 1091
Score = 209 (78.6 bits), Expect = 1.9e-28, Sum P(4) = 1.9e-28
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1118 SGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY------------EGYKYERI 1165
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1166 DGGITGALRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQ 1224
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1225 AFSRAHR 1231
Score = 55 (24.4 bits), Expect = 1.9e-28, Sum P(4) = 1.9e-28
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 423
YC C + +++ C +C + C+ + A E + SC C
Sbjct: 440 YCEVCQQGGEIILCDTCPRAYHLVCLDPELDRA---PEGKWSCPHC 482
Score = 48 (22.0 bits), Expect = 9.8e-12, Sum P(4) = 9.8e-12
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 697 KHVKDRNMAREICHALQDGPDILVCD 722
K +D +M E C +DG ++L CD
Sbjct: 508 KEEEDDHM--EYCRVCKDGGELLCCD 531
Score = 46 (21.3 bits), Expect = 1.6e-27, Sum P(4) = 1.6e-27
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLK 432
YC C +L+ C +C + + C+ + + + W C C+ +LK
Sbjct: 517 YCRVCKDGGELLCCDACISSYHIHCLNPPLPD------IPNGEWLCPRCTCPVLK 565
Score = 43 (20.2 bits), Expect = 1.9e-28, Sum P(4) = 1.9e-28
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 136 DAIANEKELALSEEQRKKFRKVKEEDDANMD 166
D E+E+ +SEE+ ++ + EE++ ++
Sbjct: 7 DEEEEEEEMVVSEEEEEEEEEGDEEEEEEVE 37
Score = 43 (20.2 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 438 QDYCEVCQQGGEIILCD 454
Score = 37 (18.1 bits), Expect = 4.7e-11, Sum P(4) = 4.7e-11
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1003 GKQGKLWKKGKDWYRLDG 1020
GK ++W + D++ L G
Sbjct: 1793 GKLNEIWHRRHDYWLLAG 1810
>UNIPROTKB|B4E0W6 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 UniGene:Hs.500526 HGNC:HGNC:17307
EMBL:AL365398 EMBL:AL359198 EMBL:AK303554 IPI:IPI01015564
SMR:B4E0W6 STRING:B4E0W6 Ensembl:ENST00000544642 HOVERGEN:HBG104002
Uniprot:B4E0W6
Length = 677
Score = 258 (95.9 bits), Expect = 1.9e-28, Sum P(2) = 1.9e-28
Identities = 101/373 (27%), Positives = 164/373 (43%)
Query: 543 YIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHT 602
++ ++ K E +IP I+A+L+ +Q G+ W + + K K L IL
Sbjct: 71 FLEQLLDGKKLENYKIPVPINAELRKYQQDGVN--W---LAFLNKYK-----LHGILCDD 120
Query: 603 MGLGKTFQVIAFL----------YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
MGLGKT Q I L Y + +L+V P + +W E K+ E
Sbjct: 121 MGLGKTLQSICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSRE 180
Query: 653 -LKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRN-LSFGKHVKDRNMAREICH 710
L PL + R R L + + + Y RN + F +++K C
Sbjct: 181 YLNPLH-YTGPPTERIR----LQHQVKRHNLIVASYDVVRNDIDFFRNIKFN-----YC- 229
Query: 711 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 770
+ DE H+IKN + ++A+KQ+ RI L+G+P+QNN++E + + DF+
Sbjct: 230 ---------ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMP 280
Query: 771 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDL 830
GFLG+ +F R+ PI + S+S + + L+ Q+ F+ R V +DL
Sbjct: 281 GFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDL 340
Query: 831 PPKTVFVITVKLSPLQRRLYKRFL------DLHGFTNDRVSNEKIRKS-------FFAGY 877
PPK + LSPLQ +LY+ F D+ + +E+ K F
Sbjct: 341 PPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQAL 400
Query: 878 QALAQIWNHPGIL 890
Q L ++ NHP ++
Sbjct: 401 QYLRKLCNHPALV 413
Score = 146 (56.5 bits), Expect = 1.9e-28, Sum P(2) = 1.9e-28
Identities = 39/111 (35%), Positives = 55/111 (49%)
Query: 980 LVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1039
L+F Q LD++E L K P + RLDG +R +V RFN +
Sbjct: 476 LIFCQLKSMLDIVEHDLLKPHLPSVT---------YLRLDGSIPPGQRHSIVSRFNN--D 524
Query: 1040 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQ 1090
+ L++T G LG+NL A+ V+ V+ WNP DLQA+ RA R K+
Sbjct: 525 PSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKR 575
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 176 (67.0 bits), Expect = 2.3e-28, Sum P(4) = 2.3e-28
Identities = 48/131 (36%), Positives = 69/131 (52%)
Query: 956 LDYS-GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKD 1014
L Y GK+ L +L + G ++L+F+Q LD++E +L+ G L+
Sbjct: 1241 LQYDCGKLQKLAILLQQLKDNGHRALIFTQMTKVLDVLEQFLNY------HGYLYM---- 1290
Query: 1015 WYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPT 1074
RLDG T+ +RQ L ERFN + R+ ++S+R+G LGINL A+ VI D WNP
Sbjct: 1291 --RLDGATKIEDRQILTERFNT--DSRITVFILSSRSGGLGINLTGADTVIFYDSDWNPA 1346
Query: 1075 YDLQAIYRAWR 1085
D Q R R
Sbjct: 1347 MDKQCQDRCHR 1357
Score = 176 (67.0 bits), Expect = 2.3e-28, Sum P(4) = 2.3e-28
Identities = 60/187 (32%), Positives = 88/187 (47%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLME-----YYCMVDFVREGFL 773
+V DEAH IKN R+ QAL QRR+ LTG+PLQNNL E Y+ M V +G
Sbjct: 821 MVLDEAHNIKNFRSTRWQALLNFNTQRRLLLTGTPLQNNLAELWSLLYFLMPQTVIDGKK 880
Query: 774 GSSHE----FRNRFQNP----IENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 825
S F+ F P IE GQ+ E K + + L++ L+ ++ R
Sbjct: 881 VSGFADLDAFQQWFGRPVDKIIETGQNFGQDKETKKTVAK----LHQVLRPYLLRRLKAD 936
Query: 826 VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWN 885
V+K +P K ++ KLS QR LY F+ T +++ S L ++ N
Sbjct: 937 VEKQMPAKYEHIVYCKLSKRQRFLYDDFMS-RAQTKATLASGNFM-SIVNCLMQLRKVCN 994
Query: 886 HPGILQL 892
HP + ++
Sbjct: 995 HPNLFEV 1001
Score = 117 (46.2 bits), Expect = 2.3e-28, Sum P(4) = 2.3e-28
Identities = 39/115 (33%), Positives = 56/115 (48%)
Query: 556 VRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL 615
V +PS + L+ +Q G+ W + S+ + G ILA MGLGKT Q I+ L
Sbjct: 686 VPVPSLLRGNLRTYQKQGLN--W---LASL--YNNHTNG---ILADEMGLGKTIQTISLL 735
Query: 616 -YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRR 669
Y A N G LIV P +VL NW+ EF ++ P K L + +++R
Sbjct: 736 AYLACEKENWGPH--LIVVPTSVLLNWEMEFKRFAPG-FKVLTYYGSPQQRKEKR 787
Score = 46 (21.3 bits), Expect = 2.3e-28, Sum P(4) = 2.3e-28
Identities = 18/52 (34%), Positives = 23/52 (44%)
Query: 291 SDEADVVKDECSTKL-EDHSV--------SPENINDAATDNSLHSQSLSEKF 333
S+ D + DE ST ED V SP + TD SL+ L EK+
Sbjct: 484 SESDDDMDDELSTSSDEDEEVDADVGLENSPASTEATPTDESLNLIQLKEKY 535
Score = 43 (20.2 bits), Expect = 4.7e-28, Sum P(4) = 4.7e-28
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 291 SDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQSLSEKF 333
S E+ V+ E S+ +N ND +D+ S LS F
Sbjct: 564 SSESSVMTGEESSIYSSSENESQNENDRESDDKTPSVGLSALF 606
Score = 38 (18.4 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 482 DDAELGEETKRKI 494
DD+ +GE T+ K+
Sbjct: 1201 DDSSVGENTRLKV 1213
>UNIPROTKB|F1MJ46 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 GO:GO:0035887
IPI:IPI00693529 OMA:HKPMESM EMBL:DAAA02019479 EMBL:DAAA02019480
EMBL:DAAA02019481 Ensembl:ENSBTAT00000025598 ArrayExpress:F1MJ46
Uniprot:F1MJ46
Length = 1604
Score = 177 (67.4 bits), Expect = 2.3e-28, Sum P(4) = 2.3e-28
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 719 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 777
++ DE H +KN TQ L RR+ LTG+PLQN L E + +++F+ S
Sbjct: 870 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCS 929
Query: 778 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 930 TFEQWFNAPFAMTGEKVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVEAQLPEKVEY 986
Query: 837 VITVKLSPLQRRLYKRFLDLHG--FTNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 891
VI +S LQR LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 987 VIKCDMSALQRVLY-RHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 1045
Score = 171 (65.3 bits), Expect = 2.3e-28, Sum P(4) = 2.3e-28
Identities = 51/127 (40%), Positives = 67/127 (52%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK LL IL K L+F Q + ++E Y + +G + RL
Sbjct: 1071 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAY------------RGFKYLRL 1118
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG T++ +R L+ FNEP ++ L+STRAG LG+NL SA+ VII D WNP DLQ
Sbjct: 1119 DGTTKAEDRGMLLT-FNEPGSEYF--ILLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQ 1175
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1176 AQDRAHR 1182
Score = 126 (49.4 bits), Expect = 2.3e-28, Sum P(4) = 2.3e-28
Identities = 40/140 (28%), Positives = 65/140 (46%)
Query: 517 LMNSVTLDGDLSAGASIEVLGDAITGY--IVNVVREKGEEAVRIPSSISAKLKAHQVVGI 574
++ + D D G S + L + Y + + V E+ ++ + ++ LK +Q+ G+
Sbjct: 698 IIENAKQDVDDEYGVS-QALARGLQSYYAVAHAVTERVDKQSAL--MVNGVLKQYQIKGL 754
Query: 575 RFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 634
++ V + L ILA MGLGKT Q IA + M + LI+ P
Sbjct: 755 EWL----------VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRIN-GPFLIIVP 803
Query: 635 VNVLHNWKQEFMKWRPSELK 654
++ L NW EF KW PS +K
Sbjct: 804 LSTLSNWAYEFDKWAPSVVK 823
Score = 66 (28.3 bits), Expect = 8.2e-22, Sum P(5) = 8.2e-22
Identities = 27/96 (28%), Positives = 43/96 (44%)
Query: 481 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDA 539
L +A + E+ +++ IE+ER+ R K Q S L ++ + S I+ L A
Sbjct: 439 LREARITEKLEKQQKIEQERKRRQKH---QEYLNSILQHAKDFKEYHRSVTGKIQKLTKA 495
Query: 540 ITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIR 575
+ Y N RE+ +E RI +L A G R
Sbjct: 496 VATYHANTEREQKKENERIEKERMRRLMAEDEEGYR 531
Score = 42 (19.8 bits), Expect = 2.3e-28, Sum P(4) = 2.3e-28
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 110 YRL-CKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKV 157
YRL +++ ++E+E++ G+ A K L L QR+ ++V
Sbjct: 364 YRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV 412
Score = 41 (19.5 bits), Expect = 3.0e-28, Sum P(4) = 3.0e-28
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 131 DPFVA---DAIANEKELALSEEQRKKFRKVKEED 161
D +VA + + K +++E++KK +K K E+
Sbjct: 550 DEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN 583
Score = 40 (19.1 bits), Expect = 8.2e-22, Sum P(5) = 8.2e-22
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 714 DGPDILVCDEAHMIKNTRAD 733
D D+ D H+I+N + D
Sbjct: 686 DSDDVSEVDARHIIENAKQD 705
>UNIPROTKB|B5DE69 [details] [associations]
symbol:chd8 "Chromodomain-helicase-DNA-binding protein 8"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0071339 "MLL1 complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0016055 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG107676 CTD:57680
KO:K04494 EMBL:BC168549 RefSeq:NP_001131089.2 UniGene:Str.42730
GeneID:100192376 KEGG:xtr:100192376 Xenbase:XB-GENE-966847
Uniprot:B5DE69
Length = 2184
Score = 227 (85.0 bits), Expect = 2.4e-28, Sum P(2) = 2.4e-28
Identities = 80/304 (26%), Positives = 141/304 (46%)
Query: 597 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTA-LIVTPVNVLHNWKQEFMKWRPSELKP 655
CILA MGLGKT Q I FL N+G+R L++ P++ + NW++EF W +++
Sbjct: 776 CILADEMGLGKTIQSITFLQEVY---NVGIRGPFLVIAPLSTITNWEREFGSW--TQMNT 830
Query: 656 LRVFMLEDVSRD--RRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 713
+ V+ SR ++ E+ K +KG + Y F + M C L+
Sbjct: 831 I-VYHGSLASRQMIQQYEMYCK-DSKGRLIPGAY------KFDALITTFEMVLSDCPELR 882
Query: 714 DGP-DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGF 772
+ ++ DEAH +KN +LK + + ++ LTG+PLQN + E + ++ F+
Sbjct: 883 EIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPTQ 942
Query: 773 LGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP 832
S EF F + T E V Q+ + LK + R V+K+L P
Sbjct: 943 FSSEAEFLKDFGDL--------KTEEQV----QKLQAI---LKPMMLRRLKEDVEKNLAP 987
Query: 833 KTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQL 892
K +I V+L+ +Q++ Y+ L+ + + +++ + L + NHP ++
Sbjct: 988 KQETIIEVELTNIQKKYYRAILEKNFSFLTKGASQSNTPNLLNTMMELRKCCNHPYLITG 1047
Query: 893 TKDK 896
++K
Sbjct: 1048 AEEK 1051
Score = 191 (72.3 bits), Expect = 2.4e-28, Sum P(2) = 2.4e-28
Identities = 52/135 (38%), Positives = 73/135 (54%)
Query: 951 HTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWK 1010
H + SGK+VL+ +L G K L+FSQ + LD++E YL + + L++
Sbjct: 1068 HVQAMVRSSGKLVLIDKLLPKLRAGGHKVLIFSQMVRCLDILEDYLIQ------RRYLYE 1121
Query: 1011 KGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGS 1070
R+DGR + RQ ++RF+ P + R L+ TRAG LGINL +A+ II D
Sbjct: 1122 ------RIDGRVRGNMRQAAIDRFSRPDSDRF-VFLLCTRAGGLGINLTAADTCIIFDSD 1174
Query: 1071 WNPTYDLQAIYRAWR 1085
WNP DLQA R R
Sbjct: 1175 WNPQNDLQAQARCHR 1189
Score = 40 (19.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 1038 LNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLLT 1096
L+ V C+ R+ S + HS+N D S A R D++S+ LT
Sbjct: 1935 LSSSVSCSPAPRRSSSCSSSSHSSNSEDSSDESNGVKVKPNAGLSHARLYDEESRLSLT 1993
>UNIPROTKB|Q47YP1 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 291 (107.5 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 92/302 (30%), Positives = 143/302 (47%)
Query: 595 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELK 654
L ILA MGLGKT Q +A L + L + LIV P +V+ NW E K+ P
Sbjct: 681 LNGILADDMGLGKTIQTLAHLLIEKQQGRL-TKPILIVAPTSVIFNWANEIDKFTPQ--- 736
Query: 655 PLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD 714
L +L R + L + G + S+ KD + H
Sbjct: 737 -LSYQVLHGNKRHEQFGCLEG--VENGENQVDIII---TSYALITKD------LAHYTDR 784
Query: 715 GPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLG 774
LV DEAH IKNT+ QA +K Q ++ LTG+P++N+L E++ +F+ GFLG
Sbjct: 785 KFYYLVLDEAHYIKNTKTKLYQAFLTLKAQHKLCLTGTPMENHLGEFWAQFNFLLPGFLG 844
Query: 775 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT 834
+F F+ PIE +H E +++NQR +K F+ R + + +LPPKT
Sbjct: 845 GQRQFTKLFRTPIE--KH--GELERKQLLNQR-------IKPFILRRTKDKIATELPPKT 893
Query: 835 VFVITVKLSPLQRRLYKRF-LDLHGFTNDRVSNEKIRKSFFAGYQALA---QIWNHPGIL 890
+ T+++ Q LY+ L + D ++++ +++S AL Q+ NHP +L
Sbjct: 894 EIIQTLRIEGKQAELYESVRLAMDSRLKDIIADKGLKRSQIEVLDALLKLRQVCNHPKLL 953
Query: 891 QL 892
+L
Sbjct: 954 KL 955
Score = 118 (46.6 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 32/90 (35%), Positives = 50/90 (55%)
Query: 1005 QGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRV 1064
+ +L G + +L G T ++RQ++V++F V LIS RAG +G+NL +A+ V
Sbjct: 998 EDELIDAGIGYVKLTGST--TKRQEVVDKFQRG---EVPVFLISLRAGGVGLNLTAADTV 1052
Query: 1065 IIVDGSWNPTYDLQAIYRAWRCMDKQSQFL 1094
I D WNP + QA RA+R + F+
Sbjct: 1053 IHFDPWWNPAVENQATDRAYRIGQNKPVFV 1082
Score = 115 (45.5 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 32/95 (33%), Positives = 49/95 (51%)
Query: 556 VRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL 615
+ +P ++A L+ +Q G+ W +Q +R+ + L ILA MGLGKT Q +A L
Sbjct: 652 IPVPEGLNATLRTYQHQGLN--W---LQFLREYQ-----LNGILADDMGLGKTIQTLAHL 701
Query: 616 YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP 650
+ L + LIV P +V+ NW E K+ P
Sbjct: 702 LIEKQQGRL-TKPILIVAPTSVIFNWANEIDKFTP 735
Score = 60 (26.2 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 954 KELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1013
K+++ S K+ L++ L + G K L+FSQ L LIE +L G
Sbjct: 959 KKVNQSAKLDYLMETLPEQIDEGRKILIFSQFTSMLSLIE------------DELIDAGI 1006
Query: 1014 DWYRLDGRTESSERQKLVERF 1034
+ +L G T ++RQ++V++F
Sbjct: 1007 GYVKLTGST--TKRQEVVDKF 1025
>TIGR_CMR|CPS_3404 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 291 (107.5 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 92/302 (30%), Positives = 143/302 (47%)
Query: 595 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELK 654
L ILA MGLGKT Q +A L + L + LIV P +V+ NW E K+ P
Sbjct: 681 LNGILADDMGLGKTIQTLAHLLIEKQQGRL-TKPILIVAPTSVIFNWANEIDKFTPQ--- 736
Query: 655 PLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD 714
L +L R + L + G + S+ KD + H
Sbjct: 737 -LSYQVLHGNKRHEQFGCLEG--VENGENQVDIII---TSYALITKD------LAHYTDR 784
Query: 715 GPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLG 774
LV DEAH IKNT+ QA +K Q ++ LTG+P++N+L E++ +F+ GFLG
Sbjct: 785 KFYYLVLDEAHYIKNTKTKLYQAFLTLKAQHKLCLTGTPMENHLGEFWAQFNFLLPGFLG 844
Query: 775 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT 834
+F F+ PIE +H E +++NQR +K F+ R + + +LPPKT
Sbjct: 845 GQRQFTKLFRTPIE--KH--GELERKQLLNQR-------IKPFILRRTKDKIATELPPKT 893
Query: 835 VFVITVKLSPLQRRLYKRF-LDLHGFTNDRVSNEKIRKSFFAGYQALA---QIWNHPGIL 890
+ T+++ Q LY+ L + D ++++ +++S AL Q+ NHP +L
Sbjct: 894 EIIQTLRIEGKQAELYESVRLAMDSRLKDIIADKGLKRSQIEVLDALLKLRQVCNHPKLL 953
Query: 891 QL 892
+L
Sbjct: 954 KL 955
Score = 118 (46.6 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 32/90 (35%), Positives = 50/90 (55%)
Query: 1005 QGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRV 1064
+ +L G + +L G T ++RQ++V++F V LIS RAG +G+NL +A+ V
Sbjct: 998 EDELIDAGIGYVKLTGST--TKRQEVVDKFQRG---EVPVFLISLRAGGVGLNLTAADTV 1052
Query: 1065 IIVDGSWNPTYDLQAIYRAWRCMDKQSQFL 1094
I D WNP + QA RA+R + F+
Sbjct: 1053 IHFDPWWNPAVENQATDRAYRIGQNKPVFV 1082
Score = 115 (45.5 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 32/95 (33%), Positives = 49/95 (51%)
Query: 556 VRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL 615
+ +P ++A L+ +Q G+ W +Q +R+ + L ILA MGLGKT Q +A L
Sbjct: 652 IPVPEGLNATLRTYQHQGLN--W---LQFLREYQ-----LNGILADDMGLGKTIQTLAHL 701
Query: 616 YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP 650
+ L + LIV P +V+ NW E K+ P
Sbjct: 702 LIEKQQGRL-TKPILIVAPTSVIFNWANEIDKFTP 735
Score = 60 (26.2 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 954 KELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1013
K+++ S K+ L++ L + G K L+FSQ L LIE +L G
Sbjct: 959 KKVNQSAKLDYLMETLPEQIDEGRKILIFSQFTSMLSLIE------------DELIDAGI 1006
Query: 1014 DWYRLDGRTESSERQKLVERF 1034
+ +L G T ++RQ++V++F
Sbjct: 1007 GYVKLTGST--TKRQEVVDKF 1025
>ASPGD|ASPL0000018137 [details] [associations]
symbol:AN4187 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005576
"extracellular region" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 EMBL:BN001302
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 EMBL:AACD01000068 OrthoDB:EOG44XNQZ
RefSeq:XP_661791.1 ProteinModelPortal:Q5B5J3 STRING:Q5B5J3
EnsemblFungi:CADANIAT00004481 GeneID:2873610 KEGG:ani:AN4187.2
Uniprot:Q5B5J3
Length = 1904
Score = 261 (96.9 bits), Expect = 2.9e-28, Sum P(2) = 2.9e-28
Identities = 104/404 (25%), Positives = 181/404 (44%)
Query: 512 SSKSKLMNSVTLDGDLS--AGASIEVL-G-DAITGYIVNVVREKGEEAVRIPSSISAKLK 567
+S + L+ V L+ + G S ++L G D ++ ++ + E ++P +I A+L+
Sbjct: 1260 TSFATLVKLVPLEAGIPDPPGLSEKLLEGRDRERKFMSQMLDSRKVEEFKLPVAIKAELR 1319
Query: 568 AHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTA--MRSVNLG 625
+Q G+ W + L IL MGLGKT Q I + + MR+ +
Sbjct: 1320 PYQQEGVN--WLAFLNRYN--------LHGILCDDMGLGKTLQTICIVASDHHMRAEDFA 1369
Query: 626 LRT--------ALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWR 677
+LI+ P ++ +W+QE ++ P L + ++ R + LA
Sbjct: 1370 KTQRPESRKVPSLIICPPSLSGHWQQEVKQYAPF-LNCV-AYVGPPAERSKLQGSLAD-- 1425
Query: 678 AKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQA 737
+ + Y RN D ++ R I + V DE H+IKN +A T A
Sbjct: 1426 --ADIVVTSYDICRN--------DNDVLRPISW------NYCVLDEGHLIKNPKAKVTMA 1469
Query: 738 LKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTS 797
+K++ R+ L+G+P+QNN++E + + DF+ GFLG+ F +RF PI + + S+
Sbjct: 1470 VKRINSNHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKVFLDRFAKPIATSRFSKSSK 1529
Query: 798 EDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFL--D 855
E + L++Q+ F+ R V DLPPK + S LQ++L++ F +
Sbjct: 1530 EQ-EAGALAIEALHKQVLPFLLRRLKEEVLNDLPPKIIQNYYCDPSELQKKLFEDFTKKE 1588
Query: 856 LHGFTNDRVSNEKIRKS-FFAGYQALAQIWNHPGILQLTKDKGY 898
S+EK K F Q + ++ N P ++ K Y
Sbjct: 1589 QKALQEKMGSSEKADKEHIFQALQYMRRLCNSPALVVKEGHKQY 1632
Score = 154 (59.3 bits), Expect = 2.9e-28, Sum P(2) = 2.9e-28
Identities = 44/114 (38%), Positives = 62/114 (54%)
Query: 978 KSLVFSQSIPTLDLIEF-YLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 1036
++LVF Q LD+++ L KL P Q + RLDG E++ RQ +V RFN
Sbjct: 1687 RALVFCQMKEMLDIVQSEVLQKL-LPSVQ---------FLRLDGAVEATRRQDIVNRFNS 1736
Query: 1037 PLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQ 1090
+ V L++T G LG+NL A+ VI V+ WNP D+QA+ RA R K+
Sbjct: 1737 DPSYDV--LLLTTSVGGLGLNLTGADTVIFVEHDWNPQKDIQAMDRAHRIGQKK 1788
>UNIPROTKB|K7EMY3 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL031847 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AL035406
HGNC:HGNC:16816 Ensembl:ENST00000462991 Uniprot:K7EMY3
Length = 1060
Score = 206 (77.6 bits), Expect = 3.1e-28, Sum P(2) = 3.1e-28
Identities = 52/127 (40%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L + G + L+FSQ LDL+E +L +G + R+
Sbjct: 406 SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY------------EGYKYERI 453
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 454 DGGITGGLRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 512
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 513 AFSRAHR 519
Score = 204 (76.9 bits), Expect = 3.1e-28, Sum P(2) = 3.1e-28
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 100 QGTDTILADEMGLGKTVQTIVFLYSLYKEGH-SKGPYLVSAPLSTIINWEREFEMWAPDF 158
Query: 653 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 711
E S R E + A + G + + F + + I A
Sbjct: 159 YVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELIT-IDQA 217
Query: 712 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 769
+ + LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + +++F+
Sbjct: 218 ILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFL- 276
Query: 770 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD 829
+ F N + +E + + + ED +I ++ H L ++R+ +V K +
Sbjct: 277 -----TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADVFK-N 322
Query: 830 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFT--NDRVSNEKIRKSFFAGYQALAQIWNHP 887
+P KT ++ V+LS +Q++ YK F+ F N + ++ S L + NHP
Sbjct: 323 MPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQV--SLLNIMMDLKKCCNHP 379
>TAIR|locus:2062840 [details] [associations]
symbol:SYD "SPLAYED" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009908 "flower development"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=IPI] [GO:0010199 "organ
boundary specification between lateral organs and the meristem"
evidence=IGI] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=NAS] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=RCA;IMP] [GO:0009611 "response to wounding"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006306
"DNA methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00951 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0009611 GO:GO:0006355
GO:GO:0003677 GO:GO:0003682 GO:GO:0016887 GO:GO:0004386
GO:GO:0009908 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0010199 GO:GO:0040029 InterPro:IPR014012
PROSITE:PS51204 IPI:IPI00516285 RefSeq:NP_850116.1 UniGene:At.22414
PRIDE:F4IHS2 EnsemblPlants:AT2G28290.1 GeneID:817375
KEGG:ath:AT2G28290 OMA:SDLYAIS Uniprot:F4IHS2
Length = 3574
Score = 264 (98.0 bits), Expect = 3.3e-28, Sum P(3) = 3.3e-28
Identities = 98/310 (31%), Positives = 141/310 (45%)
Query: 595 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELK 654
L ILA MGLGKT QVI+ + M + N L+V P +VL W+ E W PS K
Sbjct: 773 LNGILADEMGLGKTVQVISLICYLMETKN-DRGPFLVVVPSSVLPGWQSEINFWAPSIHK 831
Query: 655 PLRVFMLEDVSRDRRAELLAKW--RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHAL 712
++ + D R +L + K V L Y N KH DR +I H
Sbjct: 832 -----IVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYLMN----KH--DRPKLSKI-HW- 878
Query: 713 QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGF 772
++ DE H IKN LK R+ LTG+PLQNNL E + +++F+
Sbjct: 879 ----HYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWALLNFLLPNI 934
Query: 773 LGSSHEFRNRFQNPIE-NGQHTN-----STSEDVKIMNQRSHILYEQLKGFVQRMDMNVV 826
SS +F F P + NG+ + S E++ I+N+ L++ L+ FV R + V
Sbjct: 935 FNSSEDFSQWFNKPFQSNGESSAEEALLSEEENLLIINR----LHQVLRPFVLRRLKHKV 990
Query: 827 KKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNH 886
+ +LP K +I + S Q+ L KR D G + N K R + L I NH
Sbjct: 991 ENELPEKIERLIRCEASAYQKLLMKRVEDNLG----SIGNAKSR-AVHNSVMELRNICNH 1045
Query: 887 PGILQLTKDK 896
P + QL ++
Sbjct: 1046 PYLSQLHSEE 1055
Score = 166 (63.5 bits), Expect = 3.3e-28, Sum P(3) = 3.3e-28
Identities = 49/152 (32%), Positives = 75/152 (49%)
Query: 945 NDLLHEHTYKEL-DYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPG 1003
N+++ +H + GK+ +L +L + L FS LD++E YL+
Sbjct: 1057 NNIIPKHFLPPIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTL----- 1111
Query: 1004 KQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANR 1063
KG + RLDG+T +R L++ FN+ L+S RAG +G+NL +A+
Sbjct: 1112 -------KGYKYLRLDGQTSGGDRGALIDGFNKS-GSPFFIFLLSIRAGGVGVNLQAADT 1163
Query: 1064 VIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLL 1095
VI+ D WNP DLQA RA R K+ +L
Sbjct: 1164 VILFDTDWNPQVDLQAQARAHRIGQKKDVLVL 1195
Score = 112 (44.5 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 34/94 (36%), Positives = 48/94 (51%)
Query: 559 PSS-ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 617
PSS + KL+ +Q+ G+R++ V + L ILA MGLGKT QVI+ +
Sbjct: 746 PSSLVGGKLREYQMNGLRWL----------VSLYNNHLNGILADEMGLGKTVQVISLICY 795
Query: 618 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 651
M + N L+V P +VL W+ E W PS
Sbjct: 796 LMETKN-DRGPFLVVVPSSVLPGWQSEINFWAPS 828
Score = 56 (24.8 bits), Expect = 4.4e-06, Sum P(3) = 4.4e-06
Identities = 14/65 (21%), Positives = 35/65 (53%)
Query: 498 KERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVR 557
K R+ ++ L+ S + +N + D ++ G +++V+ ++ Y++ ++G V
Sbjct: 753 KLREYQMNGLRWLVSLYNNHLNGILAD-EMGLGKTVQVI--SLICYLMETKNDRGPFLVV 809
Query: 558 IPSSI 562
+PSS+
Sbjct: 810 VPSSV 814
Score = 45 (20.9 bits), Expect = 3.3e-28, Sum P(3) = 3.3e-28
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 486 LGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSA 529
+G + KR + ++ K+ Q S ++L SV+L D+SA
Sbjct: 471 MGRQNKRLLVDRSWSLKQQKADQAIGSRFNELKESVSLSDDISA 514
Score = 43 (20.2 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 13/59 (22%), Positives = 28/59 (47%)
Query: 92 TDFSSNCPNMWKFRSIITYRLCKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEEQ 150
T +N +W +++ + L + S E+ + PF ++ ++ +E LSEE+
Sbjct: 914 TPLQNNLEELW---ALLNFLLPNIFNSSEDFSQW---FNKPFQSNGESSAEEALLSEEE 966
Score = 42 (19.8 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 781 NRFQNPIENGQHTNSTSEDVKIMNQ 805
+RF+N + + +N+T ++ I N+
Sbjct: 691 SRFENEADETRTSNATDDETLIENE 715
Score = 39 (18.8 bits), Expect = 1.4e-27, Sum P(3) = 1.4e-27
Identities = 13/58 (22%), Positives = 29/58 (50%)
Query: 292 DEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHP 349
+EAD + +T +D ++ N+ +D + H +EK+Y A +++ ++ P
Sbjct: 695 NEADETRTSNAT--DDETLIE---NEDESDQAKHYLESNEKYYLMA-HSIKENINEQP 746
Score = 39 (18.8 bits), Expect = 5.4e-05, Sum P(3) = 5.4e-05
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 847 RRLYKRFLDLHGFTNDRVSNEKI---RKSFFAGYQALAQIWNHPGILQLTKD 895
+ +KR LH D++ EKI + + GY + Q + QL K+
Sbjct: 620 KEFHKRKERLHREKIDKIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKE 671
Score = 38 (18.4 bits), Expect = 4.9e-15, Sum P(3) = 4.9e-15
Identities = 21/89 (23%), Positives = 36/89 (40%)
Query: 965 LLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTES 1024
L+D+LT CS+ L S + E L+ LP ++ ++ +
Sbjct: 3150 LVDVLTECSSEPQLQLPPSAEPVISEGTE--LATLPLTEEENA----DSQLANIEPSSSP 3203
Query: 1025 SERQKLVERFNEPLNKRVKCTLISTRAGS 1053
S +K +E ++ K C L+ST S
Sbjct: 3204 SVVEKNIEAQDQDQVKTAGCELVSTGCSS 3232
>RGD|2323132 [details] [associations]
symbol:LOC100359912 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin a5-like" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:2323132 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00390811
Ensembl:ENSRNOT00000031851 Uniprot:F1M7H3
Length = 760
Score = 217 (81.4 bits), Expect = 3.6e-28, Sum P(2) = 3.6e-28
Identities = 53/127 (41%), Positives = 72/127 (56%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGKMV+L +L G + L+FSQ LD++E Y +W+ ++ RL
Sbjct: 203 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYC-----------MWRN-YEYCRL 250
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG+T ERQ + +NEP N ++STRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 251 DGQTPHDERQDSINAYNEP-NSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 309
Query: 1079 AIYRAWR 1085
A+ RA R
Sbjct: 310 AMDRAHR 316
Score = 188 (71.2 bits), Expect = 3.6e-28, Sum P(2) = 3.6e-28
Identities = 57/171 (33%), Positives = 88/171 (51%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 26 LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADD 85
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
F + F TN+ D K++ +R H++ L+ F+ R V+K LPPK I
Sbjct: 86 FDSWFD--------TNNCLGDKKLV-ERLHMV---LRPFLLRRIKADVEKSLPPKKEVKI 133
Query: 839 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 887
V LS +QR Y R L D+ N +K+R L + NHP
Sbjct: 134 YVGLSKMQREWYTRILMKDID-ILNSAGKMDKMR--LLNILMQLRKCCNHP 181
>UNIPROTKB|F1N544 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:DAAA02048806
IPI:IPI00716282 Ensembl:ENSBTAT00000019119 ArrayExpress:F1N544
Uniprot:F1N544
Length = 1998
Score = 213 (80.0 bits), Expect = 3.7e-28, Sum P(3) = 3.7e-28
Identities = 86/303 (28%), Positives = 139/303 (45%)
Query: 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 652
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 749 QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTK-GPFLVSAPLSTIINWEREFQMWAP-- 805
Query: 653 LKPLRVFMLEDVSRDRRAELLA-KWRAKGGVFLIGYTAF---RNLSFGKHVKDRNMAREI 708
K V D +D RA + ++ + G AF R HV +
Sbjct: 806 -KFYVVTYTGD--KDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELIT 862
Query: 709 CHALQDGP---DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMV 765
G LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + ++
Sbjct: 863 IDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLL 922
Query: 766 DFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 825
+F+ + F N + +E + + + ED +I ++ H L ++R+ +V
Sbjct: 923 NFL------TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADV 968
Query: 826 VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIW 884
K ++P KT ++ V+LSP+Q++ YK L + N R ++ S L +
Sbjct: 969 FK-NMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV--SLLNIMMDLKKCC 1025
Query: 885 NHP 887
NHP
Sbjct: 1026 NHP 1028
Score = 200 (75.5 bits), Expect = 3.7e-28, Sum P(3) = 3.7e-28
Identities = 51/127 (40%), Positives = 71/127 (55%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1055 SGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY------------EGYKYERI 1102
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DG + RQ+ ++RFN ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1103 DGGITGALRQEAIDRFNAHGAQQF-CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQ 1161
Query: 1079 AIYRAWR 1085
A RA R
Sbjct: 1162 AFSRAHR 1168
Score = 55 (24.4 bits), Expect = 3.7e-28, Sum P(3) = 3.7e-28
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 423
YC C + +++ C +C + C+ + A E + SC C
Sbjct: 377 YCEVCQQGGEIILCDTCPRAYHLVCLDPELDRA---PEGKWSCPHC 419
Score = 48 (22.0 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 697 KHVKDRNMAREICHALQDGPDILVCD 722
K +D +M E C +DG ++L CD
Sbjct: 445 KEEEDDHM--EYCRVCKDGGELLCCD 468
Score = 46 (21.3 bits), Expect = 3.2e-27, Sum P(3) = 3.2e-27
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLK 432
YC C +L+ C +C + + C+ + + + W C C+ +LK
Sbjct: 454 YCRVCKDGGELLCCDACISSYHIHCLNPPLPD------IPNGEWLCPRCTCPVLK 502
Score = 43 (20.2 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 706 REICHALQDGPDILVCD 722
++ C Q G +I++CD
Sbjct: 375 QDYCEVCQQGGEIILCD 391
Score = 37 (18.1 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1003 GKQGKLWKKGKDWYRLDG 1020
GK ++W + D++ L G
Sbjct: 1732 GKLNEIWHRRHDYWLLAG 1749
>UNIPROTKB|F1NVT7 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00818616
Ensembl:ENSGALT00000040615 ArrayExpress:F1NVT7 Uniprot:F1NVT7
Length = 1257
Score = 228 (85.3 bits), Expect = 4.2e-28, Sum P(2) = 4.2e-28
Identities = 81/302 (26%), Positives = 138/302 (45%)
Query: 597 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTA-LIVTPVNVLHNWKQEFMKWRPSELKP 655
CILA MGLGKT Q I FL +G+ LI+ P++ + NW++EF W +E+
Sbjct: 404 CILADEMGLGKTIQSITFLSEIFL---MGIHGPFLIIAPLSTITNWEREFRTW--TEMNA 458
Query: 656 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 715
+ V+ +SR + +R G L G F+ + + M C L+
Sbjct: 459 I-VYHGSQISRQMIQQYEMVYRDTQGNPLPGIFKFQVV-----ITTFEMILADCPELKKI 512
Query: 716 P-DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLG 774
+V DEAH +KN + LK + + ++ LTG+PLQN++ E + +++F+
Sbjct: 513 QWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPQQFP 572
Query: 775 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT 834
S F F + T E VK L LK + R + V+K+L PK
Sbjct: 573 SETAFLEEFGDL--------KTEEQVKK-------LQSILKPMMLRRLKDDVEKNLAPKQ 617
Query: 835 VFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTK 894
+I V+L+ +Q++ Y+ L+ + + +N+ + L + NHP ++ +
Sbjct: 618 ETIIEVELTNIQKKYYRAILEKNFSFLSKGANQHNMPNLINTMMELRKCCNHPYLINGAE 677
Query: 895 DK 896
+K
Sbjct: 678 EK 679
Score = 182 (69.1 bits), Expect = 4.2e-28, Sum P(2) = 4.2e-28
Identities = 49/127 (38%), Positives = 69/127 (54%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
+GK+VL+ +L G K L+FSQ + LD++E YL + + + R+
Sbjct: 704 AGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQ------------RRYTYERI 751
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
DGR + RQ ++RF +P + R L+ TRAG LGINL +A+ II D WNP DLQ
Sbjct: 752 DGRVRGNLRQAAIDRFCKPDSDRF-VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQ 810
Query: 1079 AIYRAWR 1085
A R R
Sbjct: 811 AQARCHR 817
Score = 38 (18.4 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 1000 PRPGKQGKLWKKGKD-----WYRLDGRTESSERQKLVERFNEPLNK--RVKC 1044
PR KQ K + ++ + LD ++S ER RFNE + R +C
Sbjct: 970 PRVRKQTKHYNSFEEDELMEFSELD--SDSDERPTRSRRFNEKTRRYLRAEC 1019
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 232 (86.7 bits), Expect = 5.1e-28, Sum P(3) = 5.1e-28
Identities = 94/380 (24%), Positives = 167/380 (43%)
Query: 491 KRKIAIEKERQERLKSLQVQFSSKSKLMNSVT---LDGDLSAGASIEV-----LGDA--- 539
K+ + +E++++ R +K ++M+ ++ + A +E L D
Sbjct: 133 KKTVKVERKKRGREDYKIADVMTKEEIMSKAKKPKMEEEAQASVKLEAEDIEKLSDTNSD 192
Query: 540 ITGYIVNVVREKGEEAVRIPSSISAK-LKAHQ---VVGIRFMWENIIQSIRKVKS-GDKG 594
I G + +RE ++ + +++ + + A Q G W + + I ++ + G
Sbjct: 193 IKGRLSETLRENSKQMLDPERTVNGQPVPAQQPQLFTGGVMRWYQV-EGIEWLRMLWENG 251
Query: 595 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELK 654
+ ILA MGLGKT Q IA + + LG L+V P++ L NW EF ++ P
Sbjct: 252 INGILADEMGLGKTIQCIAHIAMMVEKKVLG--PFLVVAPLSTLPNWISEFKRFTPE--- 306
Query: 655 PLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD 714
+ V + ++R +L+ K R G + SF ++DR + H
Sbjct: 307 -VSVLLYHGPQKER-LDLVKKIRQHQGSLRMCPVVVT--SFEIAMRDRKFLQRF-HW--- 358
Query: 715 GPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLG 774
+ L+ DE H IKN Q LK + ++ LTG+PLQNNL E + +++F+
Sbjct: 359 --NYLIVDEGHRIKNLNCRLVQELKMLPTDNKLLLTGTPLQNNLSELWSLLNFLLPDVFD 416
Query: 775 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRS----HILYEQLKGFVQRMDMNVVKKDL 830
F + F I S +E++ + N+R H+L+ L F+ R + V ++
Sbjct: 417 DLKSFESWFD--IST---ITSDAENI-VANEREQNILHMLHLILTPFLLRRLKSDVTLEV 470
Query: 831 PPKTVFVITVKLSPLQRRLY 850
PPK V+ L+ Q Y
Sbjct: 471 PPKKEIVVYAPLTNKQEAFY 490
Score = 175 (66.7 bits), Expect = 5.1e-28, Sum P(3) = 5.1e-28
Identities = 48/130 (36%), Positives = 70/130 (53%)
Query: 956 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1015
++ SGK ++L +L G K L+FSQ LD++ Y + +G ++
Sbjct: 611 VEASGKFLILDRMLPELKKRGHKVLIFSQMTSILDILMDYC------------YLRGYEY 658
Query: 1016 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1075
RLDG ++R + +++F+ + V L+STRAG LGINL SA+ VII D WNP
Sbjct: 659 SRLDGSMSYADRDENMKKFSS--DPEVFLFLLSTRAGGLGINLTSADTVIIFDSDWNPQA 716
Query: 1076 DLQAIYRAWR 1085
DLQA R R
Sbjct: 717 DLQAQDRCHR 726
Score = 45 (20.9 bits), Expect = 5.1e-28, Sum P(3) = 5.1e-28
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 117 GSVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEE 160
G+ E ++ + + V E+E L EE KK R++ EE
Sbjct: 27 GTTIEETTMEKSKHEEMVITKEMEEEEKNLEEEGEKKEREMMEE 70
>ZFIN|ZDB-GENE-070912-179 [details] [associations]
symbol:chd7 "chromodomain helicase DNA binding
protein 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007368 "determination of left/right symmetry"
evidence=IMP] [GO:0001756 "somitogenesis" evidence=IMP] [GO:0060041
"retina development in camera-type eye" evidence=IMP] [GO:0021602
"cranial nerve morphogenesis" evidence=IMP] [GO:0001947 "heart
looping" evidence=IMP] [GO:0030282 "bone mineralization"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0014029 "neural crest formation" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-070912-179 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0001756 GO:GO:0042472
GO:GO:0060041 GO:GO:0004386 GO:GO:0001947 GO:GO:0030282
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
GO:GO:0021602 EMBL:CR450710 GO:GO:0014029 IPI:IPI00493585
Ensembl:ENSDART00000016208 Ensembl:ENSDART00000135230
Uniprot:F1QGL1
Length = 3140
Score = 226 (84.6 bits), Expect = 5.4e-28, Sum P(2) = 5.4e-28
Identities = 76/261 (29%), Positives = 125/261 (47%)
Query: 597 CILAHTMGLGKTFQVIAFLYTA-MRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKP 655
CILA MGLGKT Q I FLY ++ ++ G L++ P++ + NW++EF W +EL
Sbjct: 1033 CILADEMGLGKTIQSITFLYEIYLKGIH-G--PFLVIAPLSTIPNWEREFRTW--TELNV 1087
Query: 656 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 715
+ V+ SR +R G + G A++ F + M C L++
Sbjct: 1088 V-VYHGSQASRKTIQAYEMYYRDTQGRIIKG--AYK---FHAVITTFEMILTDCPELRNV 1141
Query: 716 P-DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLG 774
P ++ DEAH +KN + LK + + ++ LTG+PLQN + E + +++F+
Sbjct: 1142 PWRCVIIDEAHRLKNRNCKLLEGLKMMDMEHKVLLTGTPLQNTVEELFSLLNFLEPDRFP 1201
Query: 775 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT 834
S F F + T E V Q+ L LK + R V+K+L PK
Sbjct: 1202 SESTFMQEFGDL--------KTEEQV----QK---LQGILKPMMLRRLKEDVEKNLAPKE 1246
Query: 835 VFVITVKLSPLQRRLYKRFLD 855
+I V+L+ +Q++ Y+ L+
Sbjct: 1247 ETIIEVELTNVQKKYYRAILE 1267
Score = 192 (72.6 bits), Expect = 5.4e-28, Sum P(2) = 5.4e-28
Identities = 51/141 (36%), Positives = 73/141 (51%)
Query: 951 HTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWK 1010
H + +GK+VL+ +L G + L+FSQ + LD++E YL + P
Sbjct: 1333 HLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYP-------- 1384
Query: 1011 KGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGS 1070
+ R+DGR + RQ ++RF+ P + R L+ TRAG LGINL +A+ II D
Sbjct: 1385 ----YERIDGRVRGNLRQAAIDRFSRPDSDRF-VFLLCTRAGGLGINLTAADTCIIFDSD 1439
Query: 1071 WNPTYDLQAIYRAWRCMDKQS 1091
WNP DLQA R R +S
Sbjct: 1440 WNPQNDLQAQARCHRIGQSKS 1460
Score = 38 (18.4 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 843 SPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQ 891
+PLQ + + F L+ DR +E F + Q+ GIL+
Sbjct: 1179 TPLQNTVEELFSLLNFLEPDRFPSESTFMQEFGDLKTEEQVQKLQGILK 1227
Score = 37 (18.1 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 6 VFRRHGKLLEEGASGFLQKKIANDGSENGG 35
V +++ + + E FL K A GS GG
Sbjct: 1257 VQKKYYRAILEKNFAFLSKSGAGGGSGGGG 1286
>CGD|CAL0001390 [details] [associations]
symbol:orf19.3035 species:5476 "Candida albicans" [GO:0000124
"SAGA complex" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IEA] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IEA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IEA] [GO:0071441 "negative regulation of histone H3-K14
acetylation" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0060303 "regulation
of nucleosome density" evidence=IEA] [GO:0006200 "ATP catabolic
process" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:2000104 "negative regulation of
DNA-dependent DNA replication" evidence=IEA] [GO:0042766
"nucleosome mobilization" evidence=IEA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IEA] [GO:0000182 "rDNA
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 CGD:CAL0001390
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907 KO:K11367
RefSeq:XP_721262.1 RefSeq:XP_721533.1 ProteinModelPortal:Q5AI17
STRING:Q5AI17 GeneID:3636889 GeneID:3637077 KEGG:cal:CaO19.10553
KEGG:cal:CaO19.3035 Uniprot:Q5AI17
Length = 1410
Score = 220 (82.5 bits), Expect = 5.4e-28, Sum P(3) = 5.4e-28
Identities = 59/141 (41%), Positives = 80/141 (56%)
Query: 950 EHTYKELDYS-GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKL 1008
E+T K + S GKMVLL +L+ G + L+FSQ + LD++ Y+
Sbjct: 663 ENTLKGIVMSSGKMVLLEQLLSRLRKEGHRVLIFSQMVRMLDILGDYM------------ 710
Query: 1009 WKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVD 1068
+ KG + RLDG SS+R+ ++ FN P +K L+STRAG LGINL +A+ VII D
Sbjct: 711 FIKGYQFQRLDGTVPSSKRKIAIDHFNAPGSKDF-AFLLSTRAGGLGINLMTADTVIIFD 769
Query: 1069 GSWNPTYDLQAIYRAWRCMDK 1089
WNP DLQA+ RA R K
Sbjct: 770 SDWNPQADLQAMARAHRIGQK 790
Score = 204 (76.9 bits), Expect = 5.4e-28, Sum P(3) = 5.4e-28
Identities = 87/310 (28%), Positives = 134/310 (43%)
Query: 598 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLR 657
ILA MGLGKT Q +AFL + + L+V P++ + W++ F KW P
Sbjct: 384 ILADEMGLGKTVQTVAFLSWLIYARRQN-GPHLVVVPLSTVPAWQETFEKWAPDVNCVYY 442
Query: 658 VFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGP 716
+ E R EL + R K V L Y +KD+N E+ A +
Sbjct: 443 LGNGEARKTIREYELYNQNRKPKFNVLLTTYEYI--------LKDKN---EL-GAFKW-- 488
Query: 717 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 776
L DEAH +KN + +ALK K R+ +TG+PLQNN+ E + +F+ G
Sbjct: 489 QFLAVDEAHRLKNAESSLYEALKGFKVSNRLLITGTPLQNNVKELAALCNFLMPG----- 543
Query: 777 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 836
+F E T + ++ I + L +++ F+ R V+K LP K+
Sbjct: 544 -----KFTIDQEIDFETIDSEQEQYIKD-----LQKKISPFILRRLKKDVEKSLPSKSER 593
Query: 837 VITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDK 896
++ V+LS +Q YK + + + N + S L + NHP + +DK
Sbjct: 594 ILRVELSDIQTEYYKNIITKN-YAALNAGNRGSQISLLNIMSELKKASNHPYLFDGAEDK 652
Query: 897 -----GYPSR 901
G PSR
Sbjct: 653 VLDKAGSPSR 662
Score = 37 (18.1 bits), Expect = 5.4e-28, Sum P(3) = 5.4e-28
Identities = 16/73 (21%), Positives = 37/73 (50%)
Query: 92 TDFSSNCPNMW-KFRSIITYR-LCKVSGSVEEIEDVDGNSDDPFVADAIANEKELALSEE 149
TD +S+ N W K++ + +++ K+ +++ D D D + +++L +
Sbjct: 203 TD-ASHLHNTWEKYQDLKSFKGFRKLDNYIKQFIIYD----DEIRNDPLTTKEDLEAMDI 257
Query: 150 QRKKFRKVKEEDD 162
+R+ RK E+D+
Sbjct: 258 ERE--RKRDEQDE 268
>UNIPROTKB|O53499 [details] [associations]
symbol:helZ "PROBABLE HELICASE HELZ" species:83332
"Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
GO:GO:0005618 GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842578
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
PIR:B70841 RefSeq:NP_216617.1 ProteinModelPortal:O53499 SMR:O53499
EnsemblBacteria:EBMYCT00000002428 GeneID:888635 KEGG:mtu:Rv2101
PATRIC:18153236 TubercuList:Rv2101 HOGENOM:HOG000099451 OMA:PYQERGL
ProtClustDB:CLSK872005 InterPro:IPR022138 Pfam:PF12419
Uniprot:O53499
Length = 1013
Score = 202 (76.2 bits), Expect = 5.9e-28, Sum P(3) = 5.9e-28
Identities = 58/179 (32%), Positives = 95/179 (53%)
Query: 719 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 778
+V DEA +KN+ + +A+++++ R+ALTG+P++N L E + ++DF+ G LGSS
Sbjct: 659 VVLDEAQAVKNSLSRAAKAVRRLRAAHRVALTGTPMENRLAELWSIMDFLNPGLLGSSER 718
Query: 779 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 838
FR R+ PIE HT +E ++ + R +IL +LK D ++ DLP K
Sbjct: 719 FRTRYAIPIERHGHTEP-AERLRA-STRPYIL-RRLK-----TDPAIID-DLPEKIEIKQ 769
Query: 839 TVKLSPLQRRLYKRFL-DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDK 896
+L+ Q LY+ + D+ + E+ R + A L Q+ NHP QL D+
Sbjct: 770 YCQLTTEQASLYQAVVADMMEKIENTEGIER-RGNVLAAMAKLKQVCNHPA--QLLHDR 825
Score = 141 (54.7 bits), Expect = 5.9e-28, Sum P(3) = 5.9e-28
Identities = 45/143 (31%), Positives = 71/143 (49%)
Query: 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1018
SGK++ L +IL GD+ L F+Q EF ++L P + + +D L
Sbjct: 832 SGKVIRLEEILEEILAEGDRVLCFTQ------FTEF--AELLVPHLAARFGRAARDIAYL 883
Query: 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078
G T R ++V RF + L+S +AG G+NL +AN V+ +D WNP + Q
Sbjct: 884 HGGTPRKRRDEMVARFQSGDGPPI--FLLSLKAGGTGLNLTAANHVVHLDRWWNPAVENQ 941
Query: 1079 AIYRAWRCMDKQS----QFLLTG 1097
A RA+R +++ +F+ TG
Sbjct: 942 ATDRAFRIGQRRTVQVRKFICTG 964
Score = 113 (44.8 bits), Expect = 5.9e-28, Sum P(3) = 5.9e-28
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 559 PSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAF--LY 616
P +A L+ +Q G+ W + S+ GLG LA MGLGKT Q++A L
Sbjct: 526 PDGFTATLRPYQQRGLA--WLAFLSSL--------GLGSCLADDMGLGKTVQLLALETLE 575
Query: 617 TAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVF 659
+ R + G+ L++ P++++ NW QE ++ P+ LRV+
Sbjct: 576 SVQRHQDRGVGPTLLLCPMSLVGNWPQEAARFAPN----LRVY 614
WARNING: HSPs involving 295 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1097 1008 0.00079 123 3 11 22 0.40 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 545
No. of states in DFA: 633 (67 KB)
Total size of DFA: 507 KB (2233 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 86.67u 0.10s 86.77t Elapsed: 00:00:05
Total cpu time: 86.76u 0.10s 86.86t Elapsed: 00:00:05
Start: Sat May 11 14:11:08 2013 End: Sat May 11 14:11:13 2013
WARNINGS ISSUED: 2