Query 001337
Match_columns 1097
No_of_seqs 566 out of 2446
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 22:58:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001337.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001337hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z3i_X Similar to RAD54-like; 100.0 1.8E-69 6.1E-74 670.2 19.2 470 554-1096 44-523 (644)
2 3mwy_W Chromo domain-containin 100.0 5.7E-66 2E-70 653.8 19.0 440 559-1096 230-679 (800)
3 1z63_A Helicase of the SNF2/RA 100.0 2.8E-62 9.4E-67 589.0 17.8 420 554-1096 27-448 (500)
4 3dmq_A RNA polymerase-associat 100.0 2.1E-45 7.3E-50 472.6 10.7 420 562-1096 150-610 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 6.9E-38 2.4E-42 370.5 8.8 421 564-1089 8-466 (494)
6 1z5z_A Helicase of the SNF2/RA 100.0 3.9E-34 1.3E-38 317.0 11.3 207 818-1096 13-219 (271)
7 2fwr_A DNA repair protein RAD2 100.0 3.6E-34 1.2E-38 341.8 11.1 355 563-1096 91-449 (472)
8 3ql9_A Transcriptional regulat 100.0 1.9E-33 6.7E-38 270.3 2.9 117 328-444 4-126 (129)
9 4a2p_A RIG-I, retinoic acid in 100.0 4.6E-31 1.6E-35 320.0 15.9 448 564-1086 6-496 (556)
10 3a1b_A DNA (cytosine-5)-methyl 100.0 3.2E-33 1.1E-37 275.5 -5.8 121 312-438 21-143 (159)
11 4a2q_A RIG-I, retinoic acid in 100.0 1.9E-30 6.5E-35 329.1 17.6 454 557-1095 238-743 (797)
12 3tbk_A RIG-I helicase domain; 100.0 8.9E-31 3E-35 316.9 13.4 441 564-1095 3-501 (555)
13 4a2w_A RIG-I, retinoic acid in 100.0 9.6E-31 3.3E-35 336.0 12.6 442 558-1086 239-737 (936)
14 2lbm_A Transcriptional regulat 100.0 3.3E-31 1.1E-35 259.3 2.8 119 326-444 8-132 (142)
15 2oca_A DAR protein, ATP-depend 100.0 1E-29 3.5E-34 306.2 14.3 338 563-1096 111-453 (510)
16 4gl2_A Interferon-induced heli 100.0 4E-29 1.4E-33 312.5 11.4 437 563-1087 5-509 (699)
17 2pv0_B DNA (cytosine-5)-methyl 100.0 3.6E-31 1.2E-35 297.4 -6.4 143 288-436 9-155 (386)
18 2ykg_A Probable ATP-dependent 100.0 5.8E-29 2E-33 310.8 11.0 429 564-1088 12-506 (696)
19 3h1t_A Type I site-specific re 99.9 6E-28 2.1E-32 296.3 14.8 365 563-1095 176-555 (590)
20 1xti_A Probable ATP-dependent 99.9 8.6E-27 2.9E-31 269.8 13.5 318 565-1095 30-353 (391)
21 1hv8_A Putative ATP-dependent 99.9 1.3E-26 4.3E-31 265.3 11.9 310 565-1095 28-341 (367)
22 2j0s_A ATP-dependent RNA helic 99.9 1.2E-25 4.1E-30 262.4 13.9 317 565-1095 59-379 (410)
23 1s2m_A Putative ATP-dependent 99.9 8.8E-26 3E-30 262.5 11.4 311 565-1095 43-361 (400)
24 1fuu_A Yeast initiation factor 99.9 4.4E-26 1.5E-30 263.9 8.7 317 564-1095 42-362 (394)
25 3eiq_A Eukaryotic initiation f 99.9 6.6E-26 2.2E-30 264.4 9.9 317 565-1095 62-383 (414)
26 3hgt_A HDA1 complex subunit 3; 99.9 7.7E-26 2.6E-30 251.7 8.2 199 830-1096 20-232 (328)
27 2z0m_A 337AA long hypothetical 99.9 1.5E-25 5.2E-30 253.5 9.6 102 975-1096 219-320 (337)
28 3pey_A ATP-dependent RNA helic 99.9 4.2E-25 1.4E-29 255.2 9.8 117 961-1095 230-352 (395)
29 2db3_A ATP-dependent RNA helic 99.9 4.3E-23 1.5E-27 243.8 15.0 116 961-1095 288-403 (434)
30 2i4i_A ATP-dependent RNA helic 99.9 1.5E-23 5.2E-28 244.9 10.6 118 961-1095 262-379 (417)
31 3fht_A ATP-dependent RNA helic 99.9 3.5E-23 1.2E-27 241.0 10.0 117 961-1095 253-375 (412)
32 1oyw_A RECQ helicase, ATP-depe 99.9 1E-22 3.5E-27 246.0 13.0 307 564-1096 24-340 (523)
33 2v1x_A ATP-dependent DNA helic 99.9 6.4E-22 2.2E-26 241.9 15.2 116 964-1096 256-371 (591)
34 2eyq_A TRCF, transcription-rep 99.9 5E-22 1.7E-26 259.1 14.9 311 562-1095 600-918 (1151)
35 3oiy_A Reverse gyrase helicase 99.9 1.1E-21 3.8E-26 229.7 16.4 105 961-1089 240-351 (414)
36 3sqw_A ATP-dependent RNA helic 99.9 9.5E-22 3.2E-26 240.7 14.6 109 974-1095 286-394 (579)
37 3fho_A ATP-dependent RNA helic 99.8 4.1E-22 1.4E-26 240.2 8.0 117 961-1095 344-466 (508)
38 3i5x_A ATP-dependent RNA helic 99.8 1.9E-21 6.4E-26 237.0 13.5 109 974-1095 337-445 (563)
39 1gm5_A RECG; helicase, replica 99.8 2.6E-21 8.9E-26 241.9 9.2 314 564-1096 367-694 (780)
40 3fmp_B ATP-dependent RNA helic 99.8 2E-21 6.7E-26 232.2 4.9 117 961-1095 320-442 (479)
41 2xgj_A ATP-dependent RNA helic 99.8 5.1E-20 1.7E-24 237.0 12.0 125 965-1093 331-491 (1010)
42 3l9o_A ATP-dependent RNA helic 99.8 1.6E-19 5.6E-24 234.2 11.6 114 976-1093 441-589 (1108)
43 2w00_A HSDR, R.ECOR124I; ATP-b 99.7 2.2E-18 7.6E-23 220.8 12.0 170 564-756 270-441 (1038)
44 2p6r_A Afuhel308 helicase; pro 99.7 2.2E-18 7.4E-23 215.7 10.9 119 969-1091 235-378 (702)
45 2va8_A SSO2462, SKI2-type heli 99.7 2.2E-18 7.5E-23 216.1 10.6 331 565-1091 30-398 (715)
46 2zj8_A DNA helicase, putative 99.7 5.9E-18 2E-22 212.3 10.4 321 565-1091 23-377 (720)
47 4a4z_A Antiviral helicase SKI2 99.7 2.2E-17 7.5E-22 212.5 11.9 150 562-754 36-189 (997)
48 4ddu_A Reverse gyrase; topoiso 99.7 2.6E-16 8.9E-21 204.3 16.5 158 565-757 78-264 (1104)
49 1rif_A DAR protein, DNA helica 99.6 4.6E-17 1.6E-21 180.9 4.8 165 564-770 112-278 (282)
50 1t5i_A C_terminal domain of A 99.6 1.1E-15 3.8E-20 157.5 7.6 121 957-1095 14-134 (172)
51 2v6i_A RNA helicase; membrane, 99.6 2.8E-15 9.6E-20 176.8 12.0 100 976-1095 171-287 (431)
52 1gku_B Reverse gyrase, TOP-RG; 99.6 4.5E-15 1.5E-19 192.6 15.0 87 960-1070 262-352 (1054)
53 2hjv_A ATP-dependent RNA helic 99.6 1.2E-15 4.2E-20 155.6 4.6 121 957-1095 18-138 (163)
54 2fz4_A DNA repair protein RAD2 99.5 3.9E-15 1.3E-19 161.5 7.7 141 562-757 90-232 (237)
55 2jgn_A DBX, DDX3, ATP-dependen 99.5 1.2E-15 4.3E-20 159.0 3.4 122 957-1095 28-149 (185)
56 1yks_A Genome polyprotein [con 99.5 3.2E-14 1.1E-18 168.1 13.3 99 976-1095 177-295 (440)
57 2jlq_A Serine protease subunit 99.5 9.7E-15 3.3E-19 173.2 8.3 100 976-1096 188-308 (451)
58 2yjt_D ATP-dependent RNA helic 99.3 1.3E-15 4.3E-20 156.5 0.0 119 959-1095 15-133 (170)
59 1fuk_A Eukaryotic initiation f 99.5 4.2E-15 1.4E-19 151.8 3.9 117 961-1095 17-133 (165)
60 2p6n_A ATP-dependent RNA helic 99.5 3.6E-15 1.2E-19 156.4 3.2 120 957-1095 38-157 (191)
61 2z83_A Helicase/nucleoside tri 99.5 2E-14 6.9E-19 170.8 9.9 99 976-1095 190-309 (459)
62 2wv9_A Flavivirin protease NS2 99.5 3.5E-14 1.2E-18 175.5 11.6 100 975-1095 409-529 (673)
63 2whx_A Serine protease/ntpase/ 99.5 9.1E-14 3.1E-18 170.6 11.3 93 976-1089 355-467 (618)
64 2rb4_A ATP-dependent RNA helic 99.4 3.1E-14 1.1E-18 146.8 4.1 118 960-1095 20-143 (175)
65 3eaq_A Heat resistant RNA depe 99.4 1.1E-13 3.7E-18 147.4 5.0 121 957-1095 14-134 (212)
66 3rc3_A ATP-dependent RNA helic 99.4 1.3E-12 4.3E-17 161.3 14.4 97 978-1089 322-432 (677)
67 3b6e_A Interferon-induced heli 99.4 1.8E-13 6.1E-18 144.6 4.2 148 558-730 26-177 (216)
68 1tf5_A Preprotein translocase 99.4 1.7E-12 6E-17 160.1 12.9 114 959-1090 415-536 (844)
69 2gxq_A Heat resistant RNA depe 99.4 3.8E-13 1.3E-17 141.4 6.1 159 564-754 22-186 (207)
70 1t6n_A Probable ATP-dependent 99.3 7.1E-13 2.4E-17 141.1 7.1 161 565-755 36-202 (220)
71 1nkt_A Preprotein translocase 99.3 4.8E-12 1.6E-16 156.0 14.9 114 959-1090 443-608 (922)
72 3o8b_A HCV NS3 protease/helica 99.3 1.4E-12 4.8E-17 159.4 10.0 96 975-1095 395-511 (666)
73 4f92_B U5 small nuclear ribonu 99.3 3.9E-12 1.3E-16 171.1 15.1 150 593-762 941-1100(1724)
74 2fsf_A Preprotein translocase 99.3 2.4E-12 8.1E-17 158.6 11.2 114 959-1090 424-574 (853)
75 4f92_B U5 small nuclear ribonu 99.3 2.3E-12 7.7E-17 173.4 11.7 166 565-762 79-261 (1724)
76 2pl3_A Probable ATP-dependent 99.3 1.5E-12 5.1E-17 140.3 7.0 161 564-754 46-213 (236)
77 3i32_A Heat resistant RNA depe 99.3 1.1E-12 3.9E-17 146.8 5.6 122 956-1095 10-131 (300)
78 2xau_A PRE-mRNA-splicing facto 99.3 2.9E-12 9.9E-17 161.1 8.3 112 975-1088 302-433 (773)
79 2oxc_A Probable ATP-dependent 99.3 3.8E-12 1.3E-16 136.8 7.4 159 565-754 46-209 (230)
80 1vec_A ATP-dependent RNA helic 99.3 2.3E-12 8E-17 135.4 5.6 160 565-754 25-188 (206)
81 1qde_A EIF4A, translation init 99.2 2.2E-12 7.5E-17 137.6 4.3 159 564-754 35-197 (224)
82 3ber_A Probable ATP-dependent 99.2 5E-12 1.7E-16 137.9 6.7 160 565-754 65-228 (249)
83 1q0u_A Bstdead; DEAD protein, 99.2 1.5E-12 5E-17 138.8 2.2 160 565-753 26-191 (219)
84 1wrb_A DJVLGB; RNA helicase, D 99.2 4.7E-12 1.6E-16 137.9 6.3 161 564-754 44-220 (253)
85 3jux_A Protein translocase sub 99.2 4.1E-11 1.4E-15 144.8 12.8 116 958-1091 456-579 (822)
86 3bor_A Human initiation factor 99.2 4.3E-12 1.5E-16 137.1 3.6 160 565-755 52-216 (237)
87 1c4o_A DNA nucleotide excision 99.2 2.5E-10 8.6E-15 141.4 16.6 117 960-1092 423-544 (664)
88 3iuy_A Probable ATP-dependent 99.1 3.8E-11 1.3E-15 128.5 6.4 159 564-753 41-208 (228)
89 3dkp_A Probable ATP-dependent 99.1 1.7E-11 5.6E-16 132.8 3.0 162 565-753 51-220 (245)
90 3ly5_A ATP-dependent RNA helic 99.1 6.3E-11 2.1E-15 130.1 6.2 161 565-754 76-243 (262)
91 3fe2_A Probable ATP-dependent 99.0 7.9E-11 2.7E-15 127.4 4.0 160 564-753 50-217 (242)
92 1mm2_A MI2-beta; PHD, zinc fin 99.0 3.6E-11 1.2E-15 101.6 -0.2 57 370-432 3-59 (61)
93 1fp0_A KAP-1 corepressor; PHD 98.9 1.5E-10 5E-15 104.0 1.3 52 372-429 21-72 (88)
94 2l5u_A Chromodomain-helicase-D 98.9 1.7E-10 5.8E-15 97.5 0.6 58 367-430 2-59 (61)
95 2puy_A PHD finger protein 21A; 98.8 6E-10 2.1E-14 93.9 0.8 52 373-430 2-53 (60)
96 1xwh_A Autoimmune regulator; P 98.8 6.7E-10 2.3E-14 95.4 0.8 51 373-429 5-55 (66)
97 2yql_A PHD finger protein 21A; 98.8 9.5E-10 3.2E-14 91.3 1.2 52 370-427 3-54 (56)
98 3u5n_A E3 ubiquitin-protein li 98.8 9.2E-10 3.2E-14 116.6 0.6 53 371-429 2-54 (207)
99 2lri_C Autoimmune regulator; Z 98.7 2.4E-09 8.1E-14 91.6 1.7 48 375-428 11-58 (66)
100 3o36_A Transcription intermedi 98.7 2.5E-09 8.7E-14 111.1 1.3 50 374-429 2-51 (184)
101 3fmo_B ATP-dependent RNA helic 98.6 1.8E-08 6E-13 112.9 4.9 162 564-755 113-279 (300)
102 2ro1_A Transcription intermedi 98.6 5.5E-09 1.9E-13 108.7 0.4 49 376-430 2-50 (189)
103 2yt5_A Metal-response element- 98.6 1.2E-08 4.3E-13 87.6 2.0 55 372-429 2-61 (66)
104 2d7d_A Uvrabc system protein B 98.6 2.5E-08 8.4E-13 123.5 5.1 113 960-1088 429-546 (661)
105 2ku3_A Bromodomain-containing 98.4 3.9E-08 1.3E-12 85.4 1.5 50 372-429 12-66 (71)
106 1wev_A Riken cDNA 1110020M19; 98.3 8.2E-08 2.8E-12 87.2 1.1 52 376-429 16-72 (88)
107 2l43_A N-teminal domain from h 98.3 8.6E-08 2.9E-12 86.9 1.2 48 374-429 23-75 (88)
108 2e6s_A E3 ubiquitin-protein li 98.3 1.3E-07 4.5E-12 83.3 2.1 48 375-428 25-76 (77)
109 1f62_A Transcription factor WS 98.3 7.9E-08 2.7E-12 78.1 0.5 45 378-428 2-49 (51)
110 2ipc_A Preprotein translocase 98.3 2E-06 7E-11 106.2 12.1 138 596-766 94-240 (997)
111 4gne_A Histone-lysine N-methyl 98.3 1.6E-07 5.6E-12 87.8 1.8 50 370-427 9-60 (107)
112 2e6r_A Jumonji/ARID domain-con 98.2 1.7E-07 5.8E-12 85.7 0.9 51 373-429 13-66 (92)
113 3asl_A E3 ubiquitin-protein li 98.2 3.5E-07 1.2E-11 79.2 1.0 45 378-428 20-68 (70)
114 3ask_A E3 ubiquitin-protein li 98.2 4.3E-07 1.5E-11 95.5 1.6 47 376-428 174-224 (226)
115 3llm_A ATP-dependent RNA helic 98.1 2.2E-06 7.6E-11 92.1 6.8 156 565-757 61-222 (235)
116 3crv_A XPD/RAD3 related DNA he 98.1 2.2E-06 7.5E-11 104.0 5.7 80 565-663 3-83 (551)
117 3v43_A Histone acetyltransfera 98.1 7.6E-07 2.6E-11 84.7 1.3 46 378-429 63-112 (112)
118 3shb_A E3 ubiquitin-protein li 98.0 1E-06 3.4E-11 77.6 0.3 68 347-427 4-75 (77)
119 2vl7_A XPD; helicase, unknown 97.9 4.6E-06 1.6E-10 100.9 4.6 108 965-1092 372-514 (540)
120 2ysm_A Myeloid/lymphoid or mix 97.9 1.3E-06 4.5E-11 83.0 -0.4 45 378-428 56-103 (111)
121 2ysm_A Myeloid/lymphoid or mix 97.9 3.1E-06 1.1E-10 80.3 1.9 50 372-427 3-55 (111)
122 2kwj_A Zinc finger protein DPF 97.9 2.6E-06 9E-11 81.2 1.3 46 378-429 60-108 (114)
123 2lv9_A Histone-lysine N-methyl 97.8 4.1E-06 1.4E-10 77.5 1.7 46 378-430 32-77 (98)
124 1wil_A KIAA1045 protein; ring 97.8 3.9E-06 1.3E-10 73.0 0.5 58 371-428 10-75 (89)
125 2k16_A Transcription initiatio 97.8 4.6E-06 1.6E-10 73.4 0.7 51 373-429 15-68 (75)
126 1wen_A Inhibitor of growth fam 97.7 8.8E-06 3E-10 70.6 1.7 47 374-429 14-65 (71)
127 3c6w_A P28ING5, inhibitor of g 97.7 4.9E-06 1.7E-10 69.5 -0.2 46 374-428 7-57 (59)
128 1weu_A Inhibitor of growth fam 97.6 1.3E-05 4.4E-10 72.7 1.5 47 374-429 34-85 (91)
129 2vnf_A ING 4, P29ING4, inhibit 97.6 7.5E-06 2.6E-10 68.7 -0.1 45 375-428 9-58 (60)
130 2g6q_A Inhibitor of growth pro 97.6 7.8E-06 2.7E-10 69.0 -0.1 45 375-428 10-59 (62)
131 2kwj_A Zinc finger protein DPF 97.3 5.6E-05 1.9E-09 72.0 1.6 47 378-427 3-59 (114)
132 2ri7_A Nucleosome-remodeling f 97.3 6.5E-05 2.2E-09 77.0 1.5 51 373-429 5-59 (174)
133 2jmi_A Protein YNG1, ING1 homo 97.2 6.1E-05 2.1E-09 68.1 0.9 46 373-427 23-74 (90)
134 4a15_A XPD helicase, ATP-depen 97.2 0.00015 5.2E-09 88.9 4.7 72 565-649 3-75 (620)
135 3v43_A Histone acetyltransfera 96.9 0.00024 8.2E-09 67.4 1.5 47 378-427 7-62 (112)
136 1we9_A PHD finger family prote 96.7 0.00047 1.6E-08 58.5 1.7 52 373-429 3-58 (64)
137 4b3f_X DNA-binding protein smu 96.6 0.0047 1.6E-07 76.2 9.9 67 563-646 187-254 (646)
138 1x4i_A Inhibitor of growth pro 96.3 0.0012 4.1E-08 57.0 1.6 46 375-429 5-55 (70)
139 1wem_A Death associated transc 96.1 0.0017 5.9E-08 57.0 1.8 54 373-429 13-70 (76)
140 1wep_A PHF8; structural genomi 96.0 0.0028 9.5E-08 56.1 2.4 51 373-429 9-63 (79)
141 3o70_A PHD finger protein 13; 95.8 0.0022 7.5E-08 55.0 0.8 53 369-429 12-67 (68)
142 2gk6_A Regulator of nonsense t 95.7 0.022 7.5E-07 69.9 9.7 66 564-646 179-245 (624)
143 2wjy_A Regulator of nonsense t 95.5 0.023 7.8E-07 71.5 9.0 64 565-645 356-420 (800)
144 2xzl_A ATP-dependent helicase 95.4 0.026 8.8E-07 71.2 9.1 66 565-647 360-426 (802)
145 1wew_A DNA-binding family prot 95.3 0.0035 1.2E-07 55.3 0.5 53 375-429 15-72 (78)
146 3kqi_A GRC5, PHD finger protei 95.3 0.005 1.7E-07 53.8 1.3 51 373-429 7-61 (75)
147 2xb1_A Pygopus homolog 2, B-ce 95.1 0.0055 1.9E-07 57.2 1.3 51 377-429 4-61 (105)
148 1wee_A PHD finger family prote 95.1 0.0047 1.6E-07 53.6 0.7 52 371-429 11-66 (72)
149 3e1s_A Exodeoxyribonuclease V, 94.9 0.017 5.9E-07 70.0 5.1 134 563-758 187-320 (574)
150 3upu_A ATP-dependent DNA helic 94.8 0.024 8.1E-07 66.9 5.9 64 564-639 24-87 (459)
151 3kv5_D JMJC domain-containing 94.6 0.0085 2.9E-07 70.8 1.2 55 369-429 30-88 (488)
152 2vpb_A Hpygo1, pygopus homolog 94.2 0.013 4.5E-07 49.7 1.1 50 376-427 8-64 (65)
153 2rsd_A E3 SUMO-protein ligase 94.1 0.0083 2.8E-07 51.4 -0.2 50 377-429 11-65 (68)
154 2vl7_A XPD; helicase, unknown 94.0 0.046 1.6E-06 65.8 6.0 67 565-648 7-74 (540)
155 3lfu_A DNA helicase II; SF1 he 93.9 0.018 6.3E-07 70.6 2.1 85 563-663 7-92 (647)
156 2orw_A Thymidine kinase; TMTK, 93.8 0.037 1.3E-06 56.8 3.9 35 597-635 6-40 (184)
157 3lqh_A Histone-lysine N-methyl 93.8 0.017 6E-07 59.2 1.4 50 378-429 4-63 (183)
158 1w36_D RECD, exodeoxyribonucle 93.4 0.046 1.6E-06 66.8 4.7 44 715-760 262-305 (608)
159 2j9r_A Thymidine kinase; TK1, 92.1 0.17 5.8E-06 53.2 6.1 33 599-635 33-65 (214)
160 1xx6_A Thymidine kinase; NESG, 92.0 0.23 7.7E-06 51.4 6.9 35 597-635 11-45 (191)
161 3syl_A Protein CBBX; photosynt 91.9 0.11 3.8E-06 57.1 4.7 46 592-637 65-110 (309)
162 3kv4_A PHD finger protein 8; e 91.7 0.03 1E-06 65.3 -0.2 40 385-429 17-56 (447)
163 2b8t_A Thymidine kinase; deoxy 91.5 0.23 8E-06 52.5 6.5 38 594-635 12-49 (223)
164 3pur_A Lysine-specific demethy 91.2 0.07 2.4E-06 62.6 2.1 84 331-429 11-94 (528)
165 4gne_A Histone-lysine N-methyl 91.0 0.13 4.3E-06 48.0 3.2 76 331-423 14-98 (107)
166 1uaa_A REP helicase, protein ( 89.2 0.4 1.4E-05 59.1 6.7 82 566-663 3-86 (673)
167 2d7d_A Uvrabc system protein B 89.1 0.49 1.7E-05 58.2 7.3 70 566-651 13-83 (661)
168 2orv_A Thymidine kinase; TP4A 89.0 0.44 1.5E-05 50.6 5.8 34 598-635 23-56 (234)
169 3o7a_A PHD finger protein 13 v 88.0 0.15 5E-06 41.1 1.1 38 384-428 14-51 (52)
170 3vkw_A Replicase large subunit 87.7 0.25 8.4E-06 57.6 3.2 109 596-756 163-272 (446)
171 2qby_B CDC6 homolog 3, cell di 86.6 1.7 5.8E-05 48.9 9.4 28 592-619 43-70 (384)
172 1w4r_A Thymidine kinase; type 86.2 0.4 1.4E-05 49.6 3.4 34 598-635 24-57 (195)
173 2r2a_A Uncharacterized protein 85.9 0.45 1.5E-05 49.4 3.7 39 715-753 87-132 (199)
174 3bos_A Putative DNA replicatio 85.1 1.4 4.8E-05 45.7 7.1 26 593-618 51-76 (242)
175 3eie_A Vacuolar protein sortin 84.9 0.88 3E-05 50.6 5.7 43 593-642 50-92 (322)
176 1l8q_A Chromosomal replication 84.6 1.4 4.7E-05 48.8 7.2 27 593-619 36-62 (324)
177 3cpe_A Terminase, DNA packagin 84.2 0.65 2.2E-05 56.4 4.5 148 564-756 162-316 (592)
178 2o0j_A Terminase, DNA packagin 83.8 0.96 3.3E-05 51.8 5.5 157 564-768 162-326 (385)
179 2kgg_A Histone demethylase jar 83.4 0.46 1.6E-05 38.2 1.8 37 385-427 15-52 (52)
180 2qp9_X Vacuolar protein sortin 82.1 0.82 2.8E-05 51.7 4.0 26 593-618 83-108 (355)
181 1vyx_A ORF K3, K3RING; zinc-bi 81.6 0.42 1.4E-05 39.6 1.0 48 373-428 3-55 (60)
182 3e2i_A Thymidine kinase; Zn-bi 81.2 2.4 8.2E-05 44.5 6.8 34 598-635 32-65 (219)
183 1jbk_A CLPB protein; beta barr 81.1 2.9 9.8E-05 41.3 7.3 27 593-619 42-68 (195)
184 2v1u_A Cell division control p 80.5 5.2 0.00018 44.6 10.0 28 592-619 42-69 (387)
185 2p65_A Hypothetical protein PF 78.9 2.7 9.1E-05 41.5 6.2 27 593-619 42-68 (187)
186 1a5t_A Delta prime, HOLB; zinc 78.5 2.7 9.4E-05 46.8 6.8 48 566-620 3-50 (334)
187 2kiz_A E3 ubiquitin-protein li 77.6 0.66 2.3E-05 39.0 1.0 46 373-428 11-59 (69)
188 4a15_A XPD helicase, ATP-depen 77.6 1.1 3.8E-05 54.7 3.3 78 975-1072 447-528 (620)
189 2z4s_A Chromosomal replication 77.1 3.6 0.00012 47.9 7.4 26 594-619 130-155 (440)
190 2csy_A Zinc finger protein 183 76.1 1 3.5E-05 39.2 1.9 48 372-429 11-58 (81)
191 1x4j_A Ring finger protein 38; 75.7 0.77 2.6E-05 39.4 0.9 43 375-427 22-67 (75)
192 3h4m_A Proteasome-activating n 75.7 1.2 4E-05 48.2 2.6 25 593-617 50-74 (285)
193 3te6_A Regulatory protein SIR3 75.4 6.1 0.00021 43.9 8.3 29 592-620 43-71 (318)
194 1xwi_A SKD1 protein; VPS4B, AA 75.1 1.5 5.1E-05 48.8 3.3 25 593-617 44-68 (322)
195 2qz4_A Paraplegin; AAA+, SPG7, 74.4 2.4 8.1E-05 44.9 4.6 25 593-617 38-62 (262)
196 3d8b_A Fidgetin-like protein 1 74.1 2.1 7.4E-05 48.2 4.3 25 593-617 116-140 (357)
197 2qby_A CDC6 homolog 1, cell di 73.5 9 0.00031 42.6 9.4 27 592-618 43-69 (386)
198 2d8s_A Cellular modulator of i 73.1 1.5 5.1E-05 38.5 2.1 48 373-428 12-66 (80)
199 1fnn_A CDC6P, cell division co 72.4 11 0.00037 42.1 9.7 23 596-618 46-68 (389)
200 2ecm_A Ring finger and CHY zin 71.6 1.2 4.2E-05 35.3 1.1 43 376-428 5-51 (55)
201 3u61_B DNA polymerase accessor 71.1 4.7 0.00016 44.3 6.2 41 715-755 105-147 (324)
202 2l0b_A E3 ubiquitin-protein li 70.7 1.3 4.4E-05 39.7 1.1 45 374-428 38-85 (91)
203 2chg_A Replication factor C sm 70.4 5.6 0.00019 40.1 6.1 24 595-618 39-62 (226)
204 2ku7_A MLL1 PHD3-CYP33 RRM chi 69.0 1.5 5.2E-05 41.9 1.4 43 388-430 2-45 (140)
205 3vfd_A Spastin; ATPase, microt 67.7 2.3 7.9E-05 48.5 2.7 25 593-617 147-171 (389)
206 2zan_A Vacuolar protein sortin 67.6 2.5 8.7E-05 49.2 3.1 43 593-641 166-208 (444)
207 1iym_A EL5; ring-H2 finger, ub 67.2 1.8 6E-05 34.4 1.2 42 377-428 6-51 (55)
208 3cf0_A Transitional endoplasmi 66.9 3 0.0001 45.7 3.4 26 592-617 47-72 (301)
209 2ect_A Ring finger protein 126 66.8 1.8 6.2E-05 37.2 1.3 46 373-428 12-60 (78)
210 1g5t_A COB(I)alamin adenosyltr 66.3 11 0.00038 38.8 7.2 34 595-632 29-62 (196)
211 1nkw_Y 50S ribosomal protein L 65.7 4.8 0.00016 34.6 3.6 44 330-374 11-54 (73)
212 2xeu_A Ring finger protein 4; 65.4 1.7 5.8E-05 35.6 0.7 43 376-428 3-52 (64)
213 2r62_A Cell division protease 64.3 3.4 0.00012 44.1 3.1 25 593-617 43-67 (268)
214 3ec2_A DNA replication protein 62.3 14 0.00048 36.6 7.1 27 593-619 37-63 (180)
215 1chc_A Equine herpes virus-1 r 62.1 2.4 8.2E-05 35.3 1.1 43 376-428 5-48 (68)
216 4ap4_A E3 ubiquitin ligase RNF 61.9 2.5 8.6E-05 39.9 1.3 64 355-428 50-121 (133)
217 4bbq_A Lysine-specific demethy 61.8 1.1 3.7E-05 42.3 -1.3 41 387-429 74-114 (117)
218 2ecl_A Ring-box protein 2; RNF 61.7 2 6.8E-05 37.6 0.5 31 388-428 42-72 (81)
219 2d8t_A Dactylidin, ring finger 60.9 2.8 9.6E-05 35.4 1.3 45 375-429 14-58 (71)
220 2yu4_A E3 SUMO-protein ligase 59.4 7.7 0.00026 34.8 4.0 65 376-444 7-82 (94)
221 3hu3_A Transitional endoplasmi 59.1 5 0.00017 47.4 3.5 25 592-616 236-260 (489)
222 2yur_A Retinoblastoma-binding 59.0 4.2 0.00014 34.6 2.1 46 375-428 14-60 (74)
223 3v2d_4 50S ribosomal protein L 58.9 5.6 0.00019 34.0 2.7 45 329-374 10-54 (71)
224 3b9p_A CG5977-PA, isoform A; A 58.8 4.8 0.00017 43.6 3.1 25 593-617 53-77 (297)
225 1iqp_A RFCS; clamp loader, ext 58.7 10 0.00034 41.2 5.7 23 596-618 48-70 (327)
226 2ecn_A Ring finger protein 141 57.4 3.4 0.00012 34.6 1.2 42 375-427 14-55 (70)
227 2ecw_A Tripartite motif-contai 57.3 3.5 0.00012 35.6 1.3 48 376-428 19-67 (85)
228 1d2n_A N-ethylmaleimide-sensit 57.2 8.8 0.0003 41.0 4.8 26 592-617 62-87 (272)
229 1sxj_D Activator 1 41 kDa subu 56.8 11 0.00039 41.4 5.8 24 595-618 59-82 (353)
230 1v87_A Deltex protein 2; ring- 56.5 3.8 0.00013 38.0 1.5 33 391-428 58-90 (114)
231 1njg_A DNA polymerase III subu 56.4 13 0.00045 37.7 5.9 24 595-618 46-69 (250)
232 3lrq_A E3 ubiquitin-protein li 56.4 2.7 9.1E-05 38.3 0.4 42 378-428 24-66 (100)
233 1pjr_A PCRA; DNA repair, DNA r 56.1 2.8 9.6E-05 52.0 0.7 86 562-663 8-94 (724)
234 2ecv_A Tripartite motif-contai 55.9 4.9 0.00017 34.6 2.1 48 377-429 20-68 (85)
235 1sxj_B Activator 1 37 kDa subu 55.5 9.8 0.00034 41.2 4.9 23 596-618 44-66 (323)
236 2ysj_A Tripartite motif-contai 55.4 4.5 0.00015 33.1 1.6 43 376-426 20-63 (63)
237 1jm7_A BRCA1, breast cancer ty 55.0 3.4 0.00012 38.0 0.9 44 378-428 23-66 (112)
238 2ce7_A Cell division protein F 54.9 18 0.00063 42.4 7.3 24 593-616 48-71 (476)
239 2ecy_A TNF receptor-associated 54.4 2.7 9.2E-05 34.9 0.1 43 377-428 16-58 (66)
240 1w5s_A Origin recognition comp 54.0 36 0.0012 38.2 9.5 26 593-618 49-76 (412)
241 1bor_A Transcription factor PM 54.0 5.4 0.00018 32.0 1.8 41 375-428 5-45 (56)
242 2ckl_B Ubiquitin ligase protei 53.8 3.3 0.00011 41.3 0.6 42 378-428 56-98 (165)
243 3rsn_A SET1/ASH2 histone methy 53.8 4.2 0.00014 41.1 1.3 48 381-430 9-60 (177)
244 1t1h_A Gspef-atpub14, armadill 53.6 3.4 0.00012 35.4 0.6 44 376-428 8-51 (78)
245 2ep4_A Ring finger protein 24; 53.6 4.3 0.00015 34.4 1.2 45 374-428 13-60 (74)
246 4b4t_J 26S protease regulatory 52.7 5.8 0.0002 45.6 2.5 46 592-644 180-225 (405)
247 2ct2_A Tripartite motif protei 52.6 4.8 0.00016 35.2 1.4 46 376-428 15-64 (88)
248 3ng2_A RNF4, snurf, ring finge 52.3 3.7 0.00013 34.3 0.6 43 376-428 10-59 (71)
249 2ysl_A Tripartite motif-contai 51.9 5.9 0.0002 33.3 1.8 45 376-428 20-65 (73)
250 2ea6_A Ring finger protein 4; 51.7 5 0.00017 33.2 1.3 43 376-428 15-64 (69)
251 3htk_C E3 SUMO-protein ligase 51.1 4 0.00014 43.9 0.7 43 378-428 183-228 (267)
252 4b4t_L 26S protease subunit RP 50.9 5.6 0.00019 46.2 2.0 46 592-644 213-258 (437)
253 2kjq_A DNAA-related protein; s 50.6 20 0.00067 34.9 5.7 26 593-618 35-60 (149)
254 1jm7_B BARD1, BRCA1-associated 50.4 6.1 0.00021 36.9 1.8 39 378-428 24-63 (117)
255 2ecj_A Tripartite motif-contai 50.3 6.8 0.00023 31.2 1.9 44 376-426 15-58 (58)
256 1tac_A TAT protein; transcript 50.1 4 0.00014 35.7 0.4 18 394-428 22-39 (86)
257 4ayc_A E3 ubiquitin-protein li 49.8 3.4 0.00011 40.0 -0.1 41 378-428 55-95 (138)
258 3ztg_A E3 ubiquitin-protein li 49.5 5.3 0.00018 35.4 1.2 45 376-428 13-58 (92)
259 3fl2_A E3 ubiquitin-protein li 49.1 4.1 0.00014 38.4 0.4 27 393-428 69-95 (124)
260 1r6b_X CLPA protein; AAA+, N-t 49.0 24 0.00081 43.8 7.5 27 592-618 205-231 (758)
261 4b4t_M 26S protease regulatory 49.0 6.3 0.00022 45.7 2.1 45 593-644 214-258 (434)
262 1sxj_A Activator 1 95 kDa subu 48.3 20 0.00068 42.4 6.4 25 594-618 77-101 (516)
263 3l11_A E3 ubiquitin-protein li 48.3 4.1 0.00014 37.8 0.3 44 376-429 15-59 (115)
264 2c2l_A CHIP, carboxy terminus 47.7 5.3 0.00018 42.9 1.1 45 375-428 207-251 (281)
265 2chq_A Replication factor C sm 47.2 14 0.00048 39.9 4.5 23 596-618 40-62 (319)
266 3dm5_A SRP54, signal recogniti 45.9 26 0.00089 40.7 6.6 33 597-633 103-135 (443)
267 2y43_A E3 ubiquitin-protein li 45.4 4.7 0.00016 36.3 0.2 42 377-428 23-65 (99)
268 1z6u_A NP95-like ring finger p 45.0 5 0.00017 39.5 0.3 27 393-428 95-121 (150)
269 3f1f_4 50S ribosomal protein L 45.0 8 0.00027 35.0 1.6 54 320-374 27-80 (97)
270 3cf2_A TER ATPase, transitiona 44.8 18 0.00061 45.3 5.3 44 593-643 510-553 (806)
271 2djb_A Polycomb group ring fin 44.5 8.8 0.0003 32.3 1.8 44 375-428 14-58 (72)
272 4b4t_I 26S protease regulatory 44.4 8.2 0.00028 44.7 2.0 46 592-644 214-259 (437)
273 2gno_A DNA polymerase III, gam 44.4 22 0.00074 39.1 5.4 23 594-616 18-40 (305)
274 4b4t_K 26S protease regulatory 44.2 8 0.00027 44.8 1.9 44 592-642 204-247 (428)
275 3mi9_C Protein TAT; P-TEFB, HI 44.2 4.3 0.00015 35.5 -0.3 24 394-444 22-45 (86)
276 4b4t_H 26S protease regulatory 44.1 8.5 0.00029 44.9 2.1 46 592-644 241-286 (467)
277 3hjh_A Transcription-repair-co 44.1 21 0.00072 42.0 5.5 83 597-691 17-114 (483)
278 2y1n_A E3 ubiquitin-protein li 44.1 5.2 0.00018 45.6 0.3 43 377-428 333-375 (389)
279 2egp_A Tripartite motif-contai 43.9 5.3 0.00018 34.1 0.3 48 377-428 13-61 (79)
280 1g25_A CDK-activating kinase a 43.7 6.7 0.00023 32.3 0.8 43 377-428 4-51 (65)
281 2r6a_A DNAB helicase, replicat 43.4 40 0.0014 39.0 7.8 39 593-634 202-240 (454)
282 3dpl_R Ring-box protein 1; ubi 42.7 6.7 0.00023 36.2 0.8 30 389-428 68-97 (106)
283 1xp8_A RECA protein, recombina 42.1 33 0.0011 38.7 6.6 45 594-642 74-118 (366)
284 2lq6_A Bromodomain-containing 41.3 7.9 0.00027 34.5 1.0 29 376-404 17-49 (87)
285 2q6t_A DNAB replication FORK h 40.9 68 0.0023 36.9 9.2 38 594-634 200-237 (444)
286 1jr3_A DNA polymerase III subu 40.6 25 0.00085 38.9 5.3 25 594-618 38-62 (373)
287 3k1l_B Fancl; UBC, ring, RWD, 40.0 8.6 0.0003 42.8 1.2 53 376-428 308-369 (381)
288 2dr3_A UPF0273 protein PH0284; 39.5 1E+02 0.0035 31.4 9.6 38 594-635 23-60 (247)
289 3kl4_A SRP54, signal recogniti 39.4 35 0.0012 39.5 6.3 33 597-633 100-132 (433)
290 2zr9_A Protein RECA, recombina 39.0 42 0.0014 37.5 6.8 44 594-641 61-104 (349)
291 2zet_C Melanophilin; complex, 38.8 7.6 0.00026 38.4 0.5 45 376-429 68-117 (153)
292 2f42_A STIP1 homology and U-bo 38.8 9 0.00031 38.9 1.0 43 376-427 106-148 (179)
293 1wim_A KIAA0161 protein; ring 38.6 13 0.00045 33.1 2.0 50 376-429 5-61 (94)
294 1gm5_A RECG; helicase, replica 38.2 22 0.00075 44.4 4.6 103 956-1069 397-499 (780)
295 4a0k_B E3 ubiquitin-protein li 37.4 8.3 0.00028 36.3 0.5 28 392-429 82-109 (117)
296 2ckl_A Polycomb group ring fin 37.4 6.9 0.00024 35.8 -0.0 43 376-428 15-58 (108)
297 3hct_A TNF receptor-associated 37.1 9.1 0.00031 35.7 0.8 43 376-428 18-61 (118)
298 2ct0_A Non-SMC element 1 homol 35.0 15 0.00052 31.6 1.7 42 378-427 17-59 (74)
299 3knv_A TNF receptor-associated 34.2 9.7 0.00033 37.0 0.4 43 376-428 31-74 (141)
300 3cf2_A TER ATPase, transitiona 33.9 25 0.00086 43.9 4.2 43 593-642 237-279 (806)
301 1e4u_A Transcriptional repress 33.8 15 0.00051 31.8 1.5 44 375-428 10-58 (78)
302 1vs6_Z 50S ribosomal protein L 32.8 10 0.00034 32.4 0.2 43 329-372 10-53 (70)
303 3u4q_B ATP-dependent helicase/ 32.8 29 0.001 45.4 4.8 61 602-663 9-70 (1166)
304 1qvr_A CLPB protein; coiled co 32.7 50 0.0017 41.6 6.8 26 593-618 190-215 (854)
305 1vma_A Cell division protein F 31.8 35 0.0012 37.5 4.5 31 599-633 109-139 (306)
306 1ypw_A Transitional endoplasmi 31.4 18 0.0006 45.5 2.2 25 593-617 510-534 (806)
307 4ic3_A E3 ubiquitin-protein li 31.2 13 0.00045 31.6 0.7 38 377-428 25-63 (74)
308 3pvs_A Replication-associated 31.2 27 0.00092 40.6 3.6 24 594-617 50-73 (447)
309 1ojl_A Transcriptional regulat 30.9 35 0.0012 37.2 4.4 24 593-616 24-47 (304)
310 1u94_A RECA protein, recombina 29.8 70 0.0024 35.8 6.6 38 594-635 63-100 (356)
311 2kr4_A Ubiquitin conjugation f 29.6 15 0.00052 32.2 0.8 44 375-428 13-56 (85)
312 3crv_A XPD/RAD3 related DNA he 29.1 76 0.0026 37.6 7.2 86 964-1071 380-473 (551)
313 2kre_A Ubiquitin conjugation f 28.9 23 0.00078 32.2 1.9 44 375-428 28-71 (100)
314 3bh0_A DNAB-like replicative h 28.8 2.6E+02 0.009 30.2 11.1 38 593-634 67-104 (315)
315 4dzz_A Plasmid partitioning pr 28.4 96 0.0033 30.8 6.9 39 601-643 9-49 (206)
316 2cvh_A DNA repair and recombin 28.3 1.2E+02 0.0041 30.3 7.7 23 594-616 20-42 (220)
317 1qf8_A Casein kinase II; casei 27.4 13 0.00045 37.7 0.1 34 393-427 108-141 (182)
318 2yho_A E3 ubiquitin-protein li 27.0 17 0.00058 31.4 0.7 39 377-429 19-58 (79)
319 3dzy_D Peroxisome proliferator 26.6 8.8 0.0003 44.3 -1.6 33 332-368 50-82 (419)
320 3t15_A Ribulose bisphosphate c 26.6 22 0.00076 38.5 1.7 43 592-641 34-76 (293)
321 4ap4_A E3 ubiquitin ligase RNF 26.3 16 0.00056 34.1 0.5 43 376-428 7-56 (133)
322 2ea5_A Cell growth regulator w 25.5 28 0.00097 29.1 1.8 40 375-428 14-54 (68)
323 1rmd_A RAG1; V(D)J recombinati 25.3 18 0.00061 33.5 0.5 43 377-428 24-66 (116)
324 2ecg_A Baculoviral IAP repeat- 25.2 22 0.00074 30.2 1.0 37 378-428 27-64 (75)
325 1zbd_B Rabphilin-3A; G protein 25.2 15 0.00053 35.4 0.1 48 376-429 55-107 (134)
326 2w58_A DNAI, primosome compone 24.9 58 0.002 32.5 4.4 25 595-619 55-79 (202)
327 1d0q_A DNA primase; zinc-bindi 24.0 23 0.0008 32.3 1.0 18 372-389 54-71 (103)
328 3bgw_A DNAB-like replicative h 23.8 1.9E+02 0.0065 33.2 9.1 39 593-635 196-234 (444)
329 1wgm_A Ubiquitin conjugation f 23.8 23 0.00079 32.0 0.9 43 376-428 22-65 (98)
330 2px0_A Flagellar biosynthesis 23.5 97 0.0033 33.6 6.2 22 598-619 109-130 (296)
331 4dpp_A DHDPS 2, dihydrodipicol 23.4 1E+02 0.0034 34.7 6.3 84 1011-1096 92-190 (360)
332 2vje_A E3 ubiquitin-protein li 23.3 22 0.00075 29.3 0.7 44 375-428 7-53 (64)
333 3oiy_A Reverse gyrase helicase 23.2 65 0.0022 36.3 4.9 84 957-1052 45-128 (414)
334 2k0a_A PRE-mRNA-splicing facto 23.1 21 0.00072 32.5 0.5 49 333-403 30-79 (109)
335 4dgl_A Casein kinase II subuni 23.0 17 0.00057 37.8 -0.2 34 393-427 108-141 (215)
336 1d4u_A Nucleotide excision rep 22.7 5.9 0.0002 36.9 -3.3 31 333-363 6-36 (111)
337 3t6p_A Baculoviral IAP repeat- 22.6 24 0.00083 39.5 1.0 29 59-90 11-39 (345)
338 2zpa_A Uncharacterized protein 22.5 87 0.003 38.2 5.9 34 715-754 255-289 (671)
339 2qgz_A Helicase loader, putati 22.4 38 0.0013 37.1 2.6 26 594-619 152-177 (308)
340 3cmu_A Protein RECA, recombina 22.0 1E+02 0.0035 42.5 6.9 88 593-723 1426-1513(2050)
341 2vje_B MDM4 protein; proto-onc 21.3 24 0.00082 29.0 0.5 46 373-428 4-52 (63)
342 3nhm_A Response regulator; pro 20.6 1.4E+02 0.0049 26.7 5.9 78 1012-1089 47-125 (133)
343 2ct7_A Ring finger protein 31; 20.4 42 0.0014 29.5 1.9 17 387-403 42-58 (86)
No 1
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-69 Score=670.17 Aligned_cols=470 Identities=30% Similarity=0.538 Sum_probs=375.2
Q ss_pred cceecCccccccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccc---cceeeE
Q 001337 554 EAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL---GLRTAL 630 (1097)
Q Consensus 554 ~~v~vP~~l~~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~---~~k~~L 630 (1097)
..+.+|+.+...|+|||++||.||++.+.. .....+.||||||+||||||+|+|+++..++..... ..+++|
T Consensus 44 ~~~~~~p~l~~~LrpyQ~~gv~~l~~~~~~-----~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~L 118 (644)
T 1z3i_X 44 VHVVVDPVLSKVLRPHQREGVKFLWDCVTG-----RRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVI 118 (644)
T ss_dssp CCEECCHHHHTTCCHHHHHHHHHHHHHHTT-----SSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEE
T ss_pred ceEeeChhhhhcccHHHHHHHHHHHHhhhc-----ccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEE
Confidence 346788999999999999999999876421 111356799999999999999999999988765422 245799
Q ss_pred eecchhhhhhhHHhhcccccCCCcccEEEeecccchhHHHHHHHHHHh------cCcEEEEeeccccccccCcCCcchhh
Q 001337 631 IVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRA------KGGVFLIGYTAFRNLSFGKHVKDRNM 704 (1097)
Q Consensus 631 IV~P~sLv~qW~~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~------~~~VvIitY~~~r~l~~~~~~~~~~~ 704 (1097)
||||.+++.||.+||.+|++.. +.++.+++.....+...+..|.. ..+|+|+||++++...
T Consensus 119 iV~P~sll~qW~~E~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~---------- 185 (644)
T 1z3i_X 119 VVSPSSLVRNWYNEVGKWLGGR---VQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA---------- 185 (644)
T ss_dssp EEECHHHHHHHHHHHHHHHGGG---CCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT----------
T ss_pred EEecHHHHHHHHHHHHHHcCCC---eeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH----------
Confidence 9999999999999999999752 44455554444444444445543 3579999999986421
Q ss_pred HHHHHHHhccCCCEEEecccchhcccchhHHHHHhhhccceeeeeccCccccchhhhhhhhhhhhhccCCCchhhhhhcc
Q 001337 705 AREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQ 784 (1097)
Q Consensus 705 ~~~~~~ll~~~~dlVIiDEAH~iKN~~S~~~kal~~l~a~~RllLTGTPiqNnl~El~~Ll~fL~p~~lgs~~~F~~~f~ 784 (1097)
..+....|++||+||||++||..++.++++..+++.+||+|||||++|++.|+|++++|+.|++|++...|.++|.
T Consensus 186 ----~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~ 261 (644)
T 1z3i_X 186 ----EVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFE 261 (644)
T ss_dssp ----TTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTH
T ss_pred ----HHhhcCCccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhc
Confidence 1223458999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCcccchhhcccchhHHHHHHhhHHhhhchhhhccCCCCceEEEEEEecChHHHHHHHHhhhhcCCccccc
Q 001337 785 NPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRV 864 (1097)
Q Consensus 785 ~pi~~g~~~~s~~~d~~~~~~r~~~L~~~L~~fvlRr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~il~~~~~~~~~~ 864 (1097)
.|+..+...+.+..+......+...|+.++.+|++||++.++...||++.+.+++|+||+.|+.+|+.++.........
T Consensus 262 ~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~- 340 (644)
T 1z3i_X 262 IPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESL- 340 (644)
T ss_dssp HHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSS-
T ss_pred chhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 9998887777777666667778889999999999999999999999999999999999999999999988654321111
Q ss_pred chHHHHHhhhhhHHHHHHHhcCcceeeecccCCCCCccccccCCCCCCCccceeeccCcCCccccccccCCCCccchhhh
Q 001337 865 SNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWW 944 (1097)
Q Consensus 865 ~~~~~~~~~l~~l~~Lrqi~~hP~Ll~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 944 (1097)
.........+..+..||++|+||.++............. ..+.... ..
T Consensus 341 ~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~----------------------~~~~~~~----~~------ 388 (644)
T 1z3i_X 341 QTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDG----------------------ALDLFPQ----NY------ 388 (644)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTT----------------------GGGTSCS----SC------
T ss_pred hcCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhh----------------------HHhhccc----cc------
Confidence 111122357788999999999999864221100000000 0000000 00
Q ss_pred hhhhhcccccccccCcceehhhHHHhhhcc-CCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCcc
Q 001337 945 NDLLHEHTYKELDYSGKMVLLLDILTMCSN-MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTE 1023 (1097)
Q Consensus 945 ~~ll~~~~~~~~~~S~Kl~~L~eiL~~~~~-~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts 1023 (1097)
.........|+|+..|..++..+.. .++|+||||+|+.++++|+.+|.. .|+.+.+++|+++
T Consensus 389 -----~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~------------~g~~~~~l~G~~~ 451 (644)
T 1z3i_X 389 -----STKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRN------------RRYLYVRLDGTMS 451 (644)
T ss_dssp -----CSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHH------------HTCCEEEECSSCC
T ss_pred -----cccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHH------------CCCCEEEEeCCCC
Confidence 0001122458999999999987753 589999999999999999999985 6899999999999
Q ss_pred chHHHHHHHhhcccccceeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhcccccccccc
Q 001337 1024 SSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLLT 1096 (1097)
Q Consensus 1024 ~~eR~~~i~~Fn~~~n~~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VYr 1096 (1097)
..+|++++++|+++++. ..+||+||++||+||||++|++||+||++|||+.+.||+||+||+||+++|+||+
T Consensus 452 ~~~R~~~i~~F~~~~~~-~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~ 523 (644)
T 1z3i_X 452 IKKRAKIVERFNNPSSP-EFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYR 523 (644)
T ss_dssp HHHHHHHHHHHHSTTCC-CCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEE
T ss_pred HHHHHHHHHHhcCCCCC-cEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEE
Confidence 99999999999986433 3479999999999999999999999999999999999999999999999999996
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-66 Score=653.79 Aligned_cols=440 Identities=31% Similarity=0.410 Sum_probs=343.6
Q ss_pred CccccccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhh
Q 001337 559 PSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVL 638 (1097)
Q Consensus 559 P~~l~~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv 638 (1097)
|......|+|||++||.||+... ..+.||||||+||||||+|+|+++..++.... ..+|+|||||.+|+
T Consensus 230 ~~~~~~~Lr~yQ~egv~~l~~~~----------~~~~~~ILademGlGKT~~ai~~i~~l~~~~~-~~~~~LIV~P~sll 298 (800)
T 3mwy_W 230 PFIKGGELRDFQLTGINWMAFLW----------SKGDNGILADEMGLGKTVQTVAFISWLIFARR-QNGPHIIVVPLSTM 298 (800)
T ss_dssp TTCCSSCCCTHHHHHHHHHHHHH----------TTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS-CCSCEEEECCTTTH
T ss_pred CccCCCCcCHHHHHHHHHHHHHh----------hcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC-CCCCEEEEECchHH
Confidence 33346799999999999997653 45789999999999999999999988765433 24799999999999
Q ss_pred hhhHHhhcccccCCCcccEEEeecccchhHHHHHHHH----------HHhcCcEEEEeeccccccccCcCCcchhhHHHH
Q 001337 639 HNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAK----------WRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREI 708 (1097)
Q Consensus 639 ~qW~~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~----------~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~ 708 (1097)
.||.+||.+|+|. +.+..++|....+....... .....+|+|+||+++... .
T Consensus 299 ~qW~~E~~~~~p~----~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~--------------~ 360 (800)
T 3mwy_W 299 PAWLDTFEKWAPD----LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKD--------------R 360 (800)
T ss_dssp HHHHHHHHHHSTT----CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHT--------------H
T ss_pred HHHHHHHHHHCCC----ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhh--------------H
Confidence 9999999999987 77888887665432211111 123467999999998631 2
Q ss_pred HHHhccCCCEEEecccchhcccchhHHHHHhhhccceeeeeccCccccchhhhhhhhhhhhhccCCCchhhhhhccCCCC
Q 001337 709 CHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIE 788 (1097)
Q Consensus 709 ~~ll~~~~dlVIiDEAH~iKN~~S~~~kal~~l~a~~RllLTGTPiqNnl~El~~Ll~fL~p~~lgs~~~F~~~f~~pi~ 788 (1097)
..+....|++|||||||++||..++.++++..+++.+||+|||||++|++.|+|++++||.|+.|+....|.-....
T Consensus 361 ~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~--- 437 (800)
T 3mwy_W 361 AELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQD--- 437 (800)
T ss_dssp HHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCT---
T ss_pred HHHhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccc---
Confidence 22334589999999999999999999999999999999999999999999999999999999999876655311110
Q ss_pred CCcccCCcccchhhcccchhHHHHHHhhHHhhhchhhhccCCCCceEEEEEEecChHHHHHHHHhhhhcCCcccccchHH
Q 001337 789 NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEK 868 (1097)
Q Consensus 789 ~g~~~~s~~~d~~~~~~r~~~L~~~L~~fvlRr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~il~~~~~~~~~~~~~~ 868 (1097)
.........|+..+++|++||++.++...||++.+.+++|+|++.|+.+|+.++......... ....
T Consensus 438 ------------~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~-~~~~ 504 (800)
T 3mwy_W 438 ------------EEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTA-GAKG 504 (800)
T ss_dssp ------------THHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC---------
T ss_pred ------------hhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhh-cccc
Confidence 011234567899999999999999999999999999999999999999999988754322211 1122
Q ss_pred HHHhhhhhHHHHHHHhcCcceeeecccCCCCCccccccCCCCCCCccceeeccCcCCccccccccCCCCccchhhhhhhh
Q 001337 869 IRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLL 948 (1097)
Q Consensus 869 ~~~~~l~~l~~Lrqi~~hP~Ll~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll 948 (1097)
....++..+..|+++|+||+++.......... ............
T Consensus 505 ~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~--------------------------------~~~~~~~~~~~~---- 548 (800)
T 3mwy_W 505 GHFSLLNIMNELKKASNHPYLFDNAEERVLQK--------------------------------FGDGKMTRENVL---- 548 (800)
T ss_dssp --CTHHHHHHHHHHHHHCGGGSSSHHHHHCCC--------------------------------C----CCSHHHH----
T ss_pred chhhHHHHHHHHHHHhcChhhhcchHHHHHHh--------------------------------cccccccHHHHH----
Confidence 23468889999999999999864221100000 000000000000
Q ss_pred hcccccccccCcceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHH
Q 001337 949 HEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQ 1028 (1097)
Q Consensus 949 ~~~~~~~~~~S~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~ 1028 (1097)
...+..|+|+.+|.++|..+...|+|+|||||++.++++|+.+|.. .|+.+.+++|+++..+|+
T Consensus 549 ----~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~------------~g~~~~~i~G~~~~~eR~ 612 (800)
T 3mwy_W 549 ----RGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSI------------KGINFQRLDGTVPSAQRR 612 (800)
T ss_dssp ----HHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHH------------HTCCCEEESTTSCHHHHH
T ss_pred ----HHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHh------------CCCCEEEEeCCCCHHHHH
Confidence 1123468999999999999999999999999999999999999985 689999999999999999
Q ss_pred HHHHhhcccccceeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhcccccccccc
Q 001337 1029 KLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLLT 1096 (1097)
Q Consensus 1029 ~~i~~Fn~~~n~~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VYr 1096 (1097)
+++++|++++.. ..|||+||++||+||||+.|++||+||++|||+.+.||+||+||+||+++|+|||
T Consensus 613 ~~i~~F~~~~~~-~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyr 679 (800)
T 3mwy_W 613 ISIDHFNSPDSN-DFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYR 679 (800)
T ss_dssp HHHHTTSSTTCS-CCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEE
T ss_pred HHHHHhhCCCCC-ceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEE
Confidence 999999986433 3479999999999999999999999999999999999999999999999999996
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=2.8e-62 Score=589.02 Aligned_cols=420 Identities=30% Similarity=0.460 Sum_probs=348.5
Q ss_pred cceecCccccccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeec
Q 001337 554 EAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 633 (1097)
Q Consensus 554 ~~v~vP~~l~~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~ 633 (1097)
++++ |..+...|+|||.+|+.||+... ..+.|+||||+||+|||+++++++..+..... .+++||||
T Consensus 27 ~~~~-p~~~~~~L~~~Q~~~v~~l~~~~----------~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~--~~~~LIv~ 93 (500)
T 1z63_A 27 QLLE-PYNIKANLRPYQIKGFSWMRFMN----------KLGFGICLADDMGLGKTLQTIAVFSDAKKENE--LTPSLVIC 93 (500)
T ss_dssp CCCC-CCSCSSCCCHHHHHHHHHHHHHH----------HTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC--CSSEEEEE
T ss_pred ccCC-ChhhhccchHHHHHHHHHHHHHh----------hCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCC--CCCEEEEc
Confidence 4445 88999999999999999997543 24679999999999999999999988765433 46999999
Q ss_pred chhhhhhhHHhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhc
Q 001337 634 PVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 713 (1097)
Q Consensus 634 P~sLv~qW~~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~ 713 (1097)
|.+|+.||.+||.+|+|. +++..+++.... ......+|+|+||+++.... .+..
T Consensus 94 P~~l~~qw~~e~~~~~~~----~~v~~~~g~~~~-------~~~~~~~ivi~t~~~l~~~~---------------~l~~ 147 (500)
T 1z63_A 94 PLSVLKNWEEELSKFAPH----LRFAVFHEDRSK-------IKLEDYDIILTTYAVLLRDT---------------RLKE 147 (500)
T ss_dssp CSTTHHHHHHHHHHHCTT----SCEEECSSSTTS-------CCGGGSSEEEEEHHHHTTCH---------------HHHT
T ss_pred cHHHHHHHHHHHHHHCCC----ceEEEEecCchh-------ccccCCcEEEeeHHHHhccc---------------hhcC
Confidence 999999999999999986 667777665421 11246789999999986421 1334
Q ss_pred cCCCEEEecccchhcccchhHHHHHhhhccceeeeeccCccccchhhhhhhhhhhhhccCCCchhhhhhccCCCCCCccc
Q 001337 714 DGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHT 793 (1097)
Q Consensus 714 ~~~dlVIiDEAH~iKN~~S~~~kal~~l~a~~RllLTGTPiqNnl~El~~Ll~fL~p~~lgs~~~F~~~f~~pi~~g~~~ 793 (1097)
..|++||+||||+++|..++.++++..+.+.+||+|||||++|++.|+|++++|+.|+++++...|.+.|..|+..+..
T Consensus 148 ~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~- 226 (500)
T 1z63_A 148 VEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDN- 226 (500)
T ss_dssp CCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCH-
T ss_pred CCcCEEEEeCccccCCHhHHHHHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccH-
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999888765321
Q ss_pred CCcccchhhcccchhHHHHHHhhHHhhhchhh--hccCCCCceEEEEEEecChHHHHHHHHhhhhcCCcccccchHHHHH
Q 001337 794 NSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV--VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRK 871 (1097)
Q Consensus 794 ~s~~~d~~~~~~r~~~L~~~L~~fvlRr~~~~--v~~~LP~k~e~vv~v~Ls~~Q~~lY~~il~~~~~~~~~~~~~~~~~ 871 (1097)
.....|...+.++++||++.+ +...||++.+.+++++|++.|+.+|+.+..................
T Consensus 227 -----------~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 295 (500)
T 1z63_A 227 -----------MAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKG 295 (500)
T ss_dssp -----------HHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHH
T ss_pred -----------HHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchH
Confidence 234568888999999998865 5668999999999999999999999988765433222223333445
Q ss_pred hhhhhHHHHHHHhcCcceeeecccCCCCCccccccCCCCCCCccceeeccCcCCccccccccCCCCccchhhhhhhhhcc
Q 001337 872 SFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEH 951 (1097)
Q Consensus 872 ~~l~~l~~Lrqi~~hP~Ll~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~ 951 (1097)
.++..+..|+++|+||.++....
T Consensus 296 ~~~~~l~~lr~~~~~p~l~~~~~--------------------------------------------------------- 318 (500)
T 1z63_A 296 MILSTLLKLKQIVDHPALLKGGE--------------------------------------------------------- 318 (500)
T ss_dssp HHHHHHHHHHHHTTCTHHHHCSC---------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCHHHhcCcc---------------------------------------------------------
Confidence 67888999999999998753100
Q ss_pred cccccccCcceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHH
Q 001337 952 TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLV 1031 (1097)
Q Consensus 952 ~~~~~~~S~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i 1031 (1097)
.....++|+..+.++|......++|+|||+++..+++.|..+|.. ..|+.+.+++|+++..+|++++
T Consensus 319 --~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~-----------~~~~~~~~~~g~~~~~~R~~~~ 385 (500)
T 1z63_A 319 --QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEK-----------ELNTEVPFLYGELSKKERDDII 385 (500)
T ss_dssp --CCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHH-----------HHTCCCCEEETTSCHHHHHHHH
T ss_pred --chhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHH-----------hhCCCeEEEECCCCHHHHHHHH
Confidence 012347899999999999988899999999999999999999985 2388899999999999999999
Q ss_pred HhhcccccceeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhcccccccccc
Q 001337 1032 ERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLLT 1096 (1097)
Q Consensus 1032 ~~Fn~~~n~~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VYr 1096 (1097)
++|++++ .++++|+||+++|+||||++|++||+||++|||..+.||+||++|+||+++|+||+
T Consensus 386 ~~F~~~~--~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~ 448 (500)
T 1z63_A 386 SKFQNNP--SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHK 448 (500)
T ss_dssp HHHHHCT--TCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEE
T ss_pred HHhcCCC--CCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEE
Confidence 9999853 34568999999999999999999999999999999999999999999999999986
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.1e-45 Score=472.63 Aligned_cols=420 Identities=19% Similarity=0.198 Sum_probs=295.8
Q ss_pred ccccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhhhhh
Q 001337 562 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW 641 (1097)
Q Consensus 562 l~~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv~qW 641 (1097)
....|+|||.+++.|++. ..+.|+||||+||+|||+++++++..++..+. .+++|||||.+|+.||
T Consensus 150 ~~~~LrpyQ~eav~~~l~------------~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~--~~rvLIVvP~sLl~Qw 215 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGR------------RHAPRVLLADEVGLGKTIEAGMILHQQLLSGA--AERVLIIVPETLQHQW 215 (968)
T ss_dssp CSSCCCHHHHHHHHHHHH------------SSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS--CCCEEEECCTTTHHHH
T ss_pred CCCCCcHHHHHHHHHHHH------------hcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC--CCeEEEEeCHHHHHHH
Confidence 346899999999999874 24678999999999999999999988876543 3589999999999999
Q ss_pred HHhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEe
Q 001337 642 KQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 721 (1097)
Q Consensus 642 ~~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIi 721 (1097)
..||.+|++ +.+..+++.................+|+|+||+++.... .. ...+....|++||+
T Consensus 216 ~~E~~~~f~-----l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~--------~~---~~~l~~~~~dlVIv 279 (968)
T 3dmq_A 216 LVEMLRRFN-----LRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSK--------QR---LEHLCEAEWDLLVV 279 (968)
T ss_dssp HHHHHHHSC-----CCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTST--------TT---THHHHTSCCCEEEE
T ss_pred HHHHHHHhC-----CCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCH--------HH---HHHhhhcCCCEEEe
Confidence 999988874 344555543222111100011234689999999986421 00 12234458999999
Q ss_pred cccchhcccchhH---HHHHhhh--ccceeeeeccCccccchhhhhhhhhhhhhccCCCchhhhhhccCCC---------
Q 001337 722 DEAHMIKNTRADT---TQALKQV--KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPI--------- 787 (1097)
Q Consensus 722 DEAH~iKN~~S~~---~kal~~l--~a~~RllLTGTPiqNnl~El~~Ll~fL~p~~lgs~~~F~~~f~~pi--------- 787 (1097)
||||+++|..+.. ++++..+ +++++|+|||||++|++.|+|++++|+.|+.|++...|...+....
T Consensus 280 DEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l 359 (968)
T 3dmq_A 280 DEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAML 359 (968)
T ss_dssp CCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999987665 8888888 6788999999999999999999999999999999988876642110
Q ss_pred CCCcc-cCCc---------------------ccchhhcccchhHHHHHHh-----hHHhhhchhhhccCCCCceEEEEEE
Q 001337 788 ENGQH-TNST---------------------SEDVKIMNQRSHILYEQLK-----GFVQRMDMNVVKKDLPPKTVFVITV 840 (1097)
Q Consensus 788 ~~g~~-~~s~---------------------~~d~~~~~~r~~~L~~~L~-----~fvlRr~~~~v~~~LP~k~e~vv~v 840 (1097)
..+.. .... .........+...+...+. ..+.|+++..+ ..+|++....+.+
T Consensus 360 ~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l 438 (968)
T 3dmq_A 360 LAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKL 438 (968)
T ss_dssp TTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEE
T ss_pred hccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhh-cccChhheEeeec
Confidence 00000 0000 0000000111122222222 12233334444 3789999999999
Q ss_pred ecChHHHHHHHHhhhhcCCcccccchHHHHHhhhhhHHHHHHHhcCcceeeecccCCCCCccccccCCCCCCCccceeec
Q 001337 841 KLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIG 920 (1097)
Q Consensus 841 ~Ls~~Q~~lY~~il~~~~~~~~~~~~~~~~~~~l~~l~~Lrqi~~hP~Ll~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~ 920 (1097)
++++.++.+|............ ... .. .+.+|..+...
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~---~~~----------~~--~~l~pe~~~~~--------------------------- 476 (968)
T 3dmq_A 439 PLPTQYQTAIKVSGIMGARKSA---EDR----------AR--DMLYPERIYQE--------------------------- 476 (968)
T ss_dssp CCCHHHHHHHHHHHHTTCCSSG---GGG----------TH--HHHCSGGGTTT---------------------------
T ss_pred CCCHHHHHHHHHHhhhhhhhhh---HHH----------Hh--hhcChHHHHHH---------------------------
Confidence 9999999988754332110000 000 00 01112110000
Q ss_pred cCcCCccccccccCCCCccchhhhhhhhhcccccccccCcceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCC
Q 001337 921 EKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLP 1000 (1097)
Q Consensus 921 ~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~ 1000 (1097)
+..........++|+.+|.+++.. ..+.|+|||+++..+++.|...|..
T Consensus 477 ---------------------------l~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~-- 525 (968)
T 3dmq_A 477 ---------------------------FEGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLRE-- 525 (968)
T ss_dssp ---------------------------TTSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHT--
T ss_pred ---------------------------hhhhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHH--
Confidence 000001123457899999999987 4679999999999999999999984
Q ss_pred CCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccceeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHH
Q 001337 1001 RPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAI 1080 (1097)
Q Consensus 1001 ~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAi 1080 (1097)
..|+.+..++|+++..+|.++++.|+++++ .++ +|++|+++++|||++.|++||+||++|||..+.|++
T Consensus 526 ---------~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~-~~~-vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~ 594 (968)
T 3dmq_A 526 ---------REGIRAAVFHEGMSIIERDRAAAWFAEEDT-GAQ-VLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRI 594 (968)
T ss_dssp ---------TTCCCEEEECTTSCTTHHHHHHHHHHSTTS-SCE-EEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHH
T ss_pred ---------HcCCcEEEEeCCCCHHHHHHHHHHHhCCCC-ccc-EEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHh
Confidence 248999999999999999999999998531 244 577889999999999999999999999999999999
Q ss_pred HHHhhhcccccccccc
Q 001337 1081 YRAWRCMDKQSQFLLT 1096 (1097)
Q Consensus 1081 GRa~RiGQkK~V~VYr 1096 (1097)
||++|.||+++|+||+
T Consensus 595 GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 595 GRLDRIGQAHDIQIHV 610 (968)
T ss_dssp HTTSCSSSCSCCEEEE
T ss_pred hccccCCCCceEEEEE
Confidence 9999999999999884
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.9e-38 Score=370.48 Aligned_cols=421 Identities=15% Similarity=0.110 Sum_probs=255.0
Q ss_pred ccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch-hhhhhhH
Q 001337 564 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWK 642 (1097)
Q Consensus 564 ~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~-sLv~qW~ 642 (1097)
..|+|||.+++.|+++ + ++||+++||+|||+++++++...+.. ..+++|||||. +|+.||.
T Consensus 8 ~~l~~~Q~~~i~~~~~--------------~-~~ll~~~tG~GKT~~~~~~~~~~~~~---~~~~~liv~P~~~L~~q~~ 69 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE--------------T-NCLIVLPTGLGKTLIAMMIAEYRLTK---YGGKVLMLAPTKPLVLQHA 69 (494)
T ss_dssp HCCCHHHHHHHHHGGG--------------S-CEEEECCTTSCHHHHHHHHHHHHHHH---SCSCEEEECSSHHHHHHHH
T ss_pred CCccHHHHHHHHHHhh--------------C-CEEEEcCCCCCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHHHHH
Confidence 4799999999999852 2 89999999999999999998877652 24689999996 7999999
Q ss_pred HhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEec
Q 001337 643 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 722 (1097)
Q Consensus 643 ~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiD 722 (1097)
++|.+|+.. ....+..+++....... .......+|+|+||+.+....... .+....|++||+|
T Consensus 70 ~~~~~~~~~--~~~~v~~~~g~~~~~~~---~~~~~~~~ivv~T~~~l~~~~~~~------------~~~~~~~~~vIiD 132 (494)
T 1wp9_A 70 ESFRRLFNL--PPEKIVALTGEKSPEER---SKAWARAKVIVATPQTIENDLLAG------------RISLEDVSLIVFD 132 (494)
T ss_dssp HHHHHHBCS--CGGGEEEECSCSCHHHH---HHHHHHCSEEEECHHHHHHHHHTT------------SCCTTSCSEEEEE
T ss_pred HHHHHHhCc--chhheEEeeCCcchhhh---hhhccCCCEEEecHHHHHHHHhcC------------CcchhhceEEEEE
Confidence 999999832 12466666665443221 112246799999999986422111 1123489999999
Q ss_pred ccchhcccchhHH--HHHhh-hccceeeeeccCccccchhhhhhhhhhhhhccC---CCchhhhhhccCCCCCCcccCCc
Q 001337 723 EAHMIKNTRADTT--QALKQ-VKCQRRIALTGSPLQNNLMEYYCMVDFVREGFL---GSSHEFRNRFQNPIENGQHTNST 796 (1097)
Q Consensus 723 EAH~iKN~~S~~~--kal~~-l~a~~RllLTGTPiqNnl~El~~Ll~fL~p~~l---gs~~~F~~~f~~pi~~g~~~~s~ 796 (1097)
|||++++..+... +.+.. ....++|+|||||. |+..+++.++.++.+... .....+...|..+.......
T Consensus 133 EaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 208 (494)
T 1wp9_A 133 EAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVR--- 208 (494)
T ss_dssp TGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEE---
T ss_pred CCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEe---
Confidence 9999987543221 12221 25678999999999 667777777777764432 22222222222221110000
Q ss_pred ccchhhcccchhHHHHHHhhHHhhhchhhhccCCC-CceEEEEEEecChHHHHHHHHhhhhcCCcccccchHHHH-----
Q 001337 797 SEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLP-PKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIR----- 870 (1097)
Q Consensus 797 ~~d~~~~~~r~~~L~~~L~~fvlRr~~~~v~~~LP-~k~e~vv~v~Ls~~Q~~lY~~il~~~~~~~~~~~~~~~~----- 870 (1097)
.........+...+.+++.++........+. +....+-...+......++..+.... ......-...
T Consensus 209 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 281 (494)
T 1wp9_A 209 ----VDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGN---HDLRGLLLYHAMALK 281 (494)
T ss_dssp ----ECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTC---CSTTTHHHHHHHHHH
T ss_pred ----cCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccc---cchhhHHHHHHHHHH
Confidence 0011223446666677776665543332222 21110000011111112222211100 0000000000
Q ss_pred -------------HhhhhhHHHHHHHhcCcceeeecccCCCCCccccccCCCCCCCccceeeccCcCCccccccccCCCC
Q 001337 871 -------------KSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDG 937 (1097)
Q Consensus 871 -------------~~~l~~l~~Lrqi~~hP~Ll~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 937 (1097)
..+...+..+...+.|+.... ....
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------------------------~~~~-------- 319 (494)
T 1wp9_A 282 LHHAIELLETQGLSALRAYIKKLYEEAKAGSTKA----------------------------------SKEI-------- 319 (494)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHH----------------------------------HHHH--------
T ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHhhccccchh----------------------------------hhhh--------
Confidence 001111111222211110000 0000
Q ss_pred ccchhhhhhhhhc--ccccccccCcceehhhHHHhhhc--cCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCC
Q 001337 938 FFQKDWWNDLLHE--HTYKELDYSGKMVLLLDILTMCS--NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1013 (1097)
Q Consensus 938 ~~~~~~~~~ll~~--~~~~~~~~S~Kl~~L~eiL~~~~--~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi 1013 (1097)
............ ........++|+..|.++|.... ..++|+|||+++..+++.|..+|.. .|+
T Consensus 320 -~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~------------~~~ 386 (494)
T 1wp9_A 320 -FSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVK------------DGI 386 (494)
T ss_dssp -HTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH------------TTC
T ss_pred -hhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHH------------cCC
Confidence 000000000000 00011145789999999999876 5689999999999999999999986 488
Q ss_pred ceeeccC--------CccchHHHHHHHhhcccccceeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhh
Q 001337 1014 DWYRLDG--------RTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWR 1085 (1097)
Q Consensus 1014 ~~~ridG--------sts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~R 1085 (1097)
.+..++| +++..+|+++++.|+++ .++ +|++|.++++||||++|++||+||++|||..+.|++||++|
T Consensus 387 ~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~---~~~-vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R 462 (494)
T 1wp9_A 387 KAKRFVGQASKENDRGLSQREQKLILDEFARG---EFN-VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGR 462 (494)
T ss_dssp CEEEECCSSCC-------CCHHHHHHHHHHHT---SCS-EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCS
T ss_pred CcEEEeccccccccccCCHHHHHHHHHHHhcC---Cce-EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccC
Confidence 9999999 99999999999999974 333 58899999999999999999999999999999999999999
Q ss_pred hccc
Q 001337 1086 CMDK 1089 (1097)
Q Consensus 1086 iGQk 1089 (1097)
.||-
T Consensus 463 ~g~g 466 (494)
T 1wp9_A 463 HMPG 466 (494)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 9993
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=3.9e-34 Score=317.04 Aligned_cols=207 Identities=28% Similarity=0.371 Sum_probs=148.5
Q ss_pred HhhhchhhhccCCCCceEEEEEEecChHHHHHHHHhhhhcCCcccccchHHHHHhhhhhHHHHHHHhcCcceeeecccCC
Q 001337 818 VQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKG 897 (1097)
Q Consensus 818 vlRr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~il~~~~~~~~~~~~~~~~~~~l~~l~~Lrqi~~hP~Ll~~~~~~~ 897 (1097)
-+||++.++..+||++.+++++|+||+.|+++|+.++..................++..+..||++|+||.++....
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~--- 89 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE--- 89 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSC---
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCCc---
Confidence 36899999999999999999999999999999999876532111111222233468899999999999998863000
Q ss_pred CCCccccccCCCCCCCccceeeccCcCCccccccccCCCCccchhhhhhhhhcccccccccCcceehhhHHHhhhccCCC
Q 001337 898 YPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGD 977 (1097)
Q Consensus 898 ~~~~e~~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S~Kl~~L~eiL~~~~~~ge 977 (1097)
.....|+|+.+|.++|..+...++
T Consensus 90 --------------------------------------------------------~~~~~s~K~~~L~~ll~~~~~~~~ 113 (271)
T 1z5z_A 90 --------------------------------------------------------QSVRRSGKMIRTMEIIEEALDEGD 113 (271)
T ss_dssp --------------------------------------------------------CCSTTCHHHHHHHHHHHHHHHTTC
T ss_pred --------------------------------------------------------cccccCHHHHHHHHHHHHHHhCCC
Confidence 012348899999999999888899
Q ss_pred ceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccceeeEEEeeeccccccce
Q 001337 978 KSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGIN 1057 (1097)
Q Consensus 978 KVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg~GLN 1057 (1097)
|+||||+|+.+++.|..+|.. ..|+.+.+++|+++..+|++++++|++++ .++|||+||++||+|||
T Consensus 114 kvlIFs~~~~~~~~l~~~L~~-----------~~g~~~~~l~G~~~~~~R~~~i~~F~~~~--~~~v~L~st~~~g~Gln 180 (271)
T 1z5z_A 114 KIAIFTQFVDMGKIIRNIIEK-----------ELNTEVPFLYGELSKKERDDIISKFQNNP--SVKFIVLSVKAGGFGIN 180 (271)
T ss_dssp CEEEEESCHHHHHHHHHHHHH-----------HHCSCCCEECTTSCHHHHHHHHHHHHHCT--TCCEEEEECCTTCCCCC
T ss_pred eEEEEeccHHHHHHHHHHHHH-----------hcCCcEEEEECCCCHHHHHHHHHHhcCCC--CCCEEEEehhhhcCCcC
Confidence 999999999999999999985 23889999999999999999999999853 45679999999999999
Q ss_pred ecccceEEEEcCCcCCcccHHHHHHHhhhcccccccccc
Q 001337 1058 LHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLLT 1096 (1097)
Q Consensus 1058 L~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VYr 1096 (1097)
|++|++||+||+||||..+.||+||+||+||+++|+||+
T Consensus 181 l~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~ 219 (271)
T 1z5z_A 181 LTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHK 219 (271)
T ss_dssp CTTCSEEEECSCCSCTTTC--------------CCEEEE
T ss_pred cccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEE
Confidence 999999999999999999999999999999999999996
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=3.6e-34 Score=341.80 Aligned_cols=355 Identities=19% Similarity=0.183 Sum_probs=241.2
Q ss_pred cccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch-hhhhhh
Q 001337 563 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNW 641 (1097)
Q Consensus 563 ~~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~-sLv~qW 641 (1097)
...|+|||.+++.+++ .+.++||+++||+|||++++.++... .+++|||||. .|+.||
T Consensus 91 ~~~l~~~Q~~ai~~i~--------------~~~~~ll~~~TGsGKT~~~l~~i~~~-------~~~~Lvl~P~~~L~~Q~ 149 (472)
T 2fwr_A 91 EISLRDYQEKALERWL--------------VDKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQW 149 (472)
T ss_dssp CCCBCHHHHHHHHHHT--------------TTTEEEEECCTTSCHHHHHHHHHHHH-------CSCEEEEESSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHH--------------hcCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEECCHHHHHHH
Confidence 4579999999998764 23468999999999999998887654 3589999998 899999
Q ss_pred HHhhcccccCCCcccE-EEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEE
Q 001337 642 KQEFMKWRPSELKPLR-VFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 720 (1097)
Q Consensus 642 ~~Ei~k~~p~~~~~l~-V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVI 720 (1097)
.++|.+| + +. +..+++.... ..+|+|+||+++.... ..+...|++||
T Consensus 150 ~~~~~~~-~-----~~~v~~~~g~~~~-----------~~~Ivv~T~~~l~~~~---------------~~~~~~~~liI 197 (472)
T 2fwr_A 150 KERLGIF-G-----EEYVGEFSGRIKE-----------LKPLTVSTYDSAYVNA---------------EKLGNRFMLLI 197 (472)
T ss_dssp HHHGGGG-C-----GGGEEEBSSSCBC-----------CCSEEEEEHHHHHHTH---------------HHHTTTCSEEE
T ss_pred HHHHHhC-C-----CcceEEECCCcCC-----------cCCEEEEEcHHHHHHH---------------HHhcCCCCEEE
Confidence 9999995 2 44 6666654432 4689999998864310 12234799999
Q ss_pred ecccchhcccchhHHHHHhhhccceeeeeccCccccchhhhhhhhhhhhhccCCCchhhhhhccCCCCCCcccCCcccch
Q 001337 721 CDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDV 800 (1097)
Q Consensus 721 iDEAH~iKN~~S~~~kal~~l~a~~RllLTGTPiqNnl~El~~Ll~fL~p~~lgs~~~F~~~f~~pi~~g~~~~s~~~d~ 800 (1097)
+||||++.+... .+.+..+.+.++++|||||.+++-.+. .
T Consensus 198 vDEaH~~~~~~~--~~~~~~~~~~~~l~lSATp~~~~~~~~-~------------------------------------- 237 (472)
T 2fwr_A 198 FDEVHHLPAESY--VQIAQMSIAPFRLGLTATFEREDGRHE-I------------------------------------- 237 (472)
T ss_dssp EETGGGTTSTTT--HHHHHTCCCSEEEEEESCCCCTTSGGG-S-------------------------------------
T ss_pred EECCcCCCChHH--HHHHHhcCCCeEEEEecCccCCCCHHH-H-------------------------------------
Confidence 999999988653 345666688999999999987542210 0
Q ss_pred hhcccchhHHHHHHhhHHhhhchhhhc-cCCCCceEEEEEEecChHHHHHHHHhhhhcCCcccccchHHHHHhhhhhHHH
Q 001337 801 KIMNQRSHILYEQLKGFVQRMDMNVVK-KDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQA 879 (1097)
Q Consensus 801 ~~~~~r~~~L~~~L~~fvlRr~~~~v~-~~LP~k~e~vv~v~Ls~~Q~~lY~~il~~~~~~~~~~~~~~~~~~~l~~l~~ 879 (1097)
|...+.+.+.+....++. ..+++.....+.+++++.++..|+.+..........
T Consensus 238 ---------l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------------- 292 (472)
T 2fwr_A 238 ---------LKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRA---------------- 292 (472)
T ss_dssp ---------HHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSS----------------
T ss_pred ---------HHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHh----------------
Confidence 111111222222222222 237777777889999999999887654432110000
Q ss_pred HHHHhcCcceeeecccCCCCCccccccCCCCCCCccceeeccCcCCccccccccCCCCccchhhhhhhhhcccccccccC
Q 001337 880 LAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYS 959 (1097)
Q Consensus 880 Lrqi~~hP~Ll~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S 959 (1097)
..+.. .....+... .... ... ........... .........+
T Consensus 293 -------~~~~~-~~~~~~~~~-----------~~~~---~~~---------~~~~~~~~~~~-------~~~~~~~~~~ 334 (472)
T 2fwr_A 293 -------RGITL-RRAEDFNKI-----------VMAS---GYD---------ERAYEALRAWE-------EARRIAFNSK 334 (472)
T ss_dssp -------CCCTT-TCCSSSTTT-----------TTTT---CCS---------SSSSTTTHHHH-------HHHHHHHSCS
T ss_pred -------cCccc-cchhhHHHH-----------HHHh---ccC---------HHHHHHHHHHH-------HHHHHhhcCh
Confidence 00000 000000000 0000 000 00000000000 0000112356
Q ss_pred cceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhccccc
Q 001337 960 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1039 (1097)
Q Consensus 960 ~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n 1039 (1097)
.|+..|.++|.. ..++|+|||+++..+++.|...|. +..++|+++..+|+++++.|++
T Consensus 335 ~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----------------~~~~~g~~~~~~R~~~~~~F~~--- 392 (472)
T 2fwr_A 335 NKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----------------IPAITHRTSREEREEILEGFRT--- 392 (472)
T ss_dssp HHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----------------CCBCCSSSCSHHHHTHHHHHHH---
T ss_pred HHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----------------cceeeCCCCHHHHHHHHHHHhC---
Confidence 799999999987 457999999999999999988774 3468899999999999999997
Q ss_pred ceeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhccc-ccccccc
Q 001337 1040 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDK-QSQFLLT 1096 (1097)
Q Consensus 1040 ~~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQk-K~V~VYr 1096 (1097)
+.++ +|++|+++++|||++.++.||++|++|||..+.|++||++|.||. +.|+||+
T Consensus 393 g~~~-vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~ 449 (472)
T 2fwr_A 393 GRFR-AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYE 449 (472)
T ss_dssp SSCS-BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEE
T ss_pred CCCC-EEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEE
Confidence 3444 478999999999999999999999999999999999999999998 7888884
No 8
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=99.97 E-value=1.9e-33 Score=270.27 Aligned_cols=117 Identities=27% Similarity=0.633 Sum_probs=110.9
Q ss_pred ccCcceeeccccceEE-----EeeccceeEEEEecCcccchhhcccccCCCCCcceeeeccCCCCeeeccccccchhhhh
Q 001337 328 SLSEKFYCTACNNVAI-----EVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTC 402 (1097)
Q Consensus 328 ~~~~~~~C~~Cg~~~~-----~~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~gg~l~~Cd~C~~~fc~~C 402 (1097)
++.++|+||+||++++ .++.||+|+|++|++|+.+|.++.|.+|+||+++||+||++||+|+|||+|||+||+.|
T Consensus 4 ~~~~~~~Ct~Cg~~~~~~~~~~~~~HPll~v~~C~~C~~~y~~~~~~~d~Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~C 83 (129)
T 3ql9_A 4 GSMGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKC 83 (129)
T ss_dssp -CCCSCBCTTTCCBCCCCBTTTEEECTTTCCEEEHHHHHHHHHSCCCBCTTSCBSSCTTTCCCSEEEECSSSSCEEEHHH
T ss_pred ccCCceEeccCCCCCcccCCCccccCCCcCceeCHhHHhhhhccccccCCCCCCCcCeecCCCCeeEecCCCchhhhHHH
Confidence 3457899999999975 68899999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhhhhhhhh-hcccceeeecChhhHHHHHHHHhhhcCC
Q 001337 403 VKRNISEACLSDEV-QASCWQCCCCSPSLLKRLTSELGRAMGS 444 (1097)
Q Consensus 403 l~~~~~~~~~~~~~-~~~~W~C~~C~~~~~~~l~~~~~~~~~~ 444 (1097)
|.+|+|+++++++. ++++|+|++|.|+|+++|+..|+++|+.
T Consensus 84 l~~~lg~~~l~~i~~~~~~W~C~~C~~~pl~~L~~~C~~v~~~ 126 (129)
T 3ql9_A 84 ILRNLGRRELSTIMDENNQWYCYICHPEPLLDLVTACNSVYEN 126 (129)
T ss_dssp HHHHTCHHHHHHHTCTTSCCCCTTTCCGGGHHHHHHHHHHHTT
T ss_pred hCCCcchhHHHHhccCCCCeEcCCcCCHHHHHHHHHHHHHHHH
Confidence 99999999998875 7999999999999999999999999986
No 9
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.97 E-value=4.6e-31 Score=320.01 Aligned_cols=448 Identities=13% Similarity=0.113 Sum_probs=197.1
Q ss_pred ccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhcccc-ceeeEeecch-hhhhhh
Q 001337 564 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLG-LRTALIVTPV-NVLHNW 641 (1097)
Q Consensus 564 ~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~-~k~~LIV~P~-sLv~qW 641 (1097)
..|+|||.+++.+++ .+..+|++++||+|||++++..+...+.....+ .+++|||||. .|+.||
T Consensus 6 ~~~~~~Q~~~i~~~~--------------~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 71 (556)
T 4a2p_A 6 KKARSYQIELAQPAI--------------NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQ 71 (556)
T ss_dssp --CCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHH
T ss_pred CCCCHHHHHHHHHHH--------------cCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHH
Confidence 468999999998874 246789999999999999888877666543211 4689999997 799999
Q ss_pred HHhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEe
Q 001337 642 KQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 721 (1097)
Q Consensus 642 ~~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIi 721 (1097)
.+++.+|++.. .+.+..+.|...... ....+....+|+|+|++.+......... .....+++||+
T Consensus 72 ~~~~~~~~~~~--~~~~~~~~g~~~~~~--~~~~~~~~~~i~v~T~~~l~~~~~~~~~-----------~~~~~~~~vVi 136 (556)
T 4a2p_A 72 KNVFKHHFERQ--GYSVQGISGENFSNV--SVEKVIEDSDIIVVTPQILVNSFEDGTL-----------TSLSIFTLMIF 136 (556)
T ss_dssp HHHHHHHHGGG--TCCEEECCCC-------CHHHHHHHCSEEEECHHHHHHHHHSSSC-----------CCSTTCSEEEE
T ss_pred HHHHHHHhccc--CceEEEEeCCCCcch--hHHHhhCCCCEEEECHHHHHHHHHhCcc-----------cccccCCEEEE
Confidence 99999998641 366666666542211 1222335679999999987643211110 01237899999
Q ss_pred cccchhcccchhHHHHHhhh---------ccceeeeeccCccccchhhhhhhh-------hhhhhccCC----Cchhhhh
Q 001337 722 DEAHMIKNTRADTTQALKQV---------KCQRRIALTGSPLQNNLMEYYCMV-------DFVREGFLG----SSHEFRN 781 (1097)
Q Consensus 722 DEAH~iKN~~S~~~kal~~l---------~a~~RllLTGTPiqNnl~El~~Ll-------~fL~p~~lg----s~~~F~~ 781 (1097)
||||++.+..+ ....+..+ ...++++|||||.+++..++...+ ..+.+..+. ....+..
T Consensus 137 DEah~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~ 215 (556)
T 4a2p_A 137 DECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQR 215 (556)
T ss_dssp ETGGGCSTTSH-HHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHH
T ss_pred ECCcccCCcch-HHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHh
Confidence 99999987764 22222222 226799999999887765544333 333322111 2233444
Q ss_pred hccCCCCCCcccCCcccchhhcccchhHHHHHHhhHHhhhchhhhccCCCCceE----------------EEEEEecChH
Q 001337 782 RFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV----------------FVITVKLSPL 845 (1097)
Q Consensus 782 ~f~~pi~~g~~~~s~~~d~~~~~~r~~~L~~~L~~fvlRr~~~~v~~~LP~k~e----------------~vv~v~Ls~~ 845 (1097)
.+..|............+ ........+...+..+......-.....++.... .....+....
T Consensus 216 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (556)
T 4a2p_A 216 FMNKPEIDVRLVKRRIHN--PFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEE 293 (556)
T ss_dssp HTCCCCEEEEECCCCSCC--HHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHH
T ss_pred cCCCCceEEEEcCCCcCC--hHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccch
Confidence 444333221111100000 0001111111222211111000000000000000 0000001111
Q ss_pred HHHHHHHhhhhcCCcccccch---HHHHHhhhhhHHHHHHHhcCcceeeecccCCCCCccccccCCCCCCCccceeeccC
Q 001337 846 QRRLYKRFLDLHGFTNDRVSN---EKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEK 922 (1097)
Q Consensus 846 Q~~lY~~il~~~~~~~~~~~~---~~~~~~~l~~l~~Lrqi~~hP~Ll~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~ 922 (1097)
+..+|..+....... ..... .............+...+..-. ..... ..+ ..
T Consensus 294 ~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~-~~~-----------~~------ 348 (556)
T 4a2p_A 294 ESRICRALFICTEHL-RKYNDALIISEDARIIDALSYLTEFFTNVK------NGPYT-ELE-----------QH------ 348 (556)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHHHHHHH------HSCCC-HHH-----------HH------
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHH------hcCCC-HHH-----------HH------
Confidence 122222211100000 00000 0000000011111111111000 00000 000 00
Q ss_pred cCCccccccccCCCCccchhhhhhhhhcccccccccCcceehhhHHHhhhc--cCCCceeEEecCCCchhHHHHHHhcCC
Q 001337 923 PRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCS--NMGDKSLVFSQSIPTLDLIEFYLSKLP 1000 (1097)
Q Consensus 923 ~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S~Kl~~L~eiL~~~~--~~geKVLIFSq~~~~ld~L~~~L~~l~ 1000 (1097)
....+. .....+. .........++|+..|.++|.... ..+.|+|||++++.+++.|..+|...+
T Consensus 349 --~~~~~~-----------~~~~~l~-~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~ 414 (556)
T 4a2p_A 349 --LTAKFQ-----------EKEPELI-ALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENP 414 (556)
T ss_dssp --HHHHHH-----------TTHHHHH-HHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCS
T ss_pred --HHHHHh-----------hHHHHhh-hhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCC
Confidence 000000 0000000 000111234789999999998765 568999999999999999999998631
Q ss_pred CCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccceeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHH
Q 001337 1001 RPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAI 1080 (1097)
Q Consensus 1001 ~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAi 1080 (1097)
...........|..+..++|+++..+|.+++++|+++ +.++ +|++|+++++|||++++++||+||++|||..+.|++
T Consensus 415 ~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~--g~~~-vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~ 491 (556)
T 4a2p_A 415 ILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS--KDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVR 491 (556)
T ss_dssp GGGSCCEEC--------------------------------CC-EEEEEC-----------CEEEEETCCSCHHHHHHC-
T ss_pred CcceeeeeEEEccCCcccccccCHHHHHHHHHHhccc--CceE-EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhc
Confidence 1000111123466677778889999999999999982 3344 589999999999999999999999999999999999
Q ss_pred HHHhhh
Q 001337 1081 YRAWRC 1086 (1097)
Q Consensus 1081 GRa~Ri 1086 (1097)
|| +|.
T Consensus 492 GR-gR~ 496 (556)
T 4a2p_A 492 GR-GRA 496 (556)
T ss_dssp ------
T ss_pred CC-CCC
Confidence 99 555
No 10
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=99.97 E-value=3.2e-33 Score=275.47 Aligned_cols=121 Identities=19% Similarity=0.440 Sum_probs=111.8
Q ss_pred cccccccccCCcccccccCcceeeccccceEEEeeccceeEEEEecCcccchhhcccccCCCCCcceeeeccCCCCeeec
Q 001337 312 PENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSC 391 (1097)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~gg~l~~C 391 (1097)
+|+++.++..+ .++.+++||+||+. +.++.||+|+|++|+.|+.+|.+++|.+|+||+++||+|||+||+|++|
T Consensus 21 r~~~~~~v~~~-----~~~~e~~Ct~CG~~-~~~~~HPlf~v~lC~~Ck~~y~e~~f~~DeDG~~~yC~wC~~Gg~l~~C 94 (159)
T 3a1b_A 21 RERLVYEVRQK-----CRNIEDICISCGSL-NVTLEHPLFVGGMCQNCKNCFLECAYQYDDDGYQSYCTICCGGREVLMC 94 (159)
T ss_dssp HHHHHHHHHTT-----SSCGGGSBTTTCCS-CCCEECSSBSSEECHHHHHHHHHHTTCBCTTSSBSSCTTTSCCSEEEEC
T ss_pred HHhhhHHHHhc-----cCCccCcccCCCCc-CccccCCCccchhhHHHHHHHhhcccccCCCCCcceeeEecCCCeEEee
Confidence 77888887766 44567999999996 5568999999999999999999999999999999999999999999999
Q ss_pred c--ccccchhhhhhhccchhhhhhhhhhcccceeeecChhhHHHHHHHH
Q 001337 392 K--SCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSEL 438 (1097)
Q Consensus 392 d--~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~~~~~l~~~~ 438 (1097)
| +|+|+||++||++|+|++++..+.++++|+||+|.|+|+++|++++
T Consensus 95 dn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~l~~ll~~R 143 (159)
T 3a1b_A 95 GNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKGTYGLLRRR 143 (159)
T ss_dssp SSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSCEETTEEBC
T ss_pred CCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCccHHHHhhhh
Confidence 9 6999999999999999999999999999999999999998887665
No 11
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.97 E-value=1.9e-30 Score=329.11 Aligned_cols=454 Identities=12% Similarity=0.106 Sum_probs=206.3
Q ss_pred ecCccc--cccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccc-cceeeEeec
Q 001337 557 RIPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL-GLRTALIVT 633 (1097)
Q Consensus 557 ~vP~~l--~~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~-~~k~~LIV~ 633 (1097)
..|..+ ...|+|||.+++.+++ .+..+|++++||+|||++++..+...+..... ..+++||||
T Consensus 238 ~~~~~~~g~~~l~~~Q~~~i~~~l--------------~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~ 303 (797)
T 4a2q_A 238 GKPPPVYETKKARSYQIELAQPAI--------------NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLA 303 (797)
T ss_dssp ----------CCCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEEC
T ss_pred cCchhhcCCCCCCHHHHHHHHHHH--------------hCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEe
Confidence 344444 5679999999998774 24679999999999999988888776655321 146899999
Q ss_pred ch-hhhhhhHHhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHh
Q 001337 634 PV-NVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHAL 712 (1097)
Q Consensus 634 P~-sLv~qW~~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll 712 (1097)
|. .|+.||.++|.+|++.. .+++..++|...... ....+....+|+|+||+.+.......... .
T Consensus 304 Pt~~L~~Q~~~~~~~~~~~~--~~~v~~~~g~~~~~~--~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~-----------~ 368 (797)
T 4a2q_A 304 TKVPVYEQQKNVFKHHFERQ--GYSVQGISGENFSNV--SVEKVIEDSDIIVVTPQILVNSFEDGTLT-----------S 368 (797)
T ss_dssp SSHHHHHHHHHHHHHHHGGG--TCCEEEECCC-------CHHHHHHTCSEEEECHHHHHHHHHSSSCC-----------C
T ss_pred CCHHHHHHHHHHHHHhcccC--CceEEEEeCCcchhh--hHHHhhCCCCEEEEchHHHHHHHHhcccc-----------c
Confidence 95 59999999999998741 366777766543221 12233457899999999876422111100 1
Q ss_pred ccCCCEEEecccchhcccchhHHHHHhhh-c--------cceeeeeccCccccchhhhhhhhhhh-------hhccC---
Q 001337 713 QDGPDILVCDEAHMIKNTRADTTQALKQV-K--------CQRRIALTGSPLQNNLMEYYCMVDFV-------REGFL--- 773 (1097)
Q Consensus 713 ~~~~dlVIiDEAH~iKN~~S~~~kal~~l-~--------a~~RllLTGTPiqNnl~El~~Ll~fL-------~p~~l--- 773 (1097)
...|++||+||||++.+..+ ....+..+ . ..++++|||||.+++..++...++.+ .+..+
T Consensus 369 ~~~~~~iViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~ 447 (797)
T 4a2q_A 369 LSIFTLMIFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTV 447 (797)
T ss_dssp GGGCSEEEETTGGGCSTTSH-HHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECC
T ss_pred cccCCEEEEECccccCCCcc-HHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecc
Confidence 23689999999999988664 32322222 2 25799999999887765555444432 22211
Q ss_pred -CCchhhhhhccCCCCCCcccCCcccchhhcccchhHHHHHHhhHHhhhchhhhccCCCCceEEEEEEecChH-------
Q 001337 774 -GSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPL------- 845 (1097)
Q Consensus 774 -gs~~~F~~~f~~pi~~g~~~~s~~~d~~~~~~r~~~L~~~L~~fvlRr~~~~v~~~LP~k~e~vv~v~Ls~~------- 845 (1097)
.....+...+..|............+ ........+...+..+......-.....+| ...+...
T Consensus 448 ~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~-------~~~~g~~~~~~~~~ 518 (797)
T 4a2q_A 448 RENIQELQRFMNKPEIDVRLVKRRIHN--PFAAIISNLMSETEALMRTIYSVDTLSQNS-------KKDFGTQNYEHWIV 518 (797)
T ss_dssp CTTHHHHHHHSCCCCCEEEECCCCSCC--HHHHHHHHHHHHHHHHHHHC-------------------CCSSHHHHHHHH
T ss_pred cccHHHHHHhcCCCceEEEecCCCCCc--HHHHHHHHHHHHHHHHHHHHHhhHHhhhhc-------cccccchhHHHHHH
Confidence 11234444444443322111110000 000011111111111111100000000010 0111111
Q ss_pred ----------------HHHHHHHhhhhcCCcccccchH---HHHHhhhhhHHHHHHHhcCcceeeecccCCCCCcccccc
Q 001337 846 ----------------QRRLYKRFLDLHGFTNDRVSNE---KIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAED 906 (1097)
Q Consensus 846 ----------------Q~~lY~~il~~~~~~~~~~~~~---~~~~~~l~~l~~Lrqi~~hP~Ll~~~~~~~~~~~e~~~d 906 (1097)
+..+|..+..... ........ .........+..++..+.+.. ..... ..+
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~-~~~--- 587 (797)
T 4a2q_A 519 VTQRKCRLLQLEDKEEESRICRALFICTE-HLRKYNDALIISEDARIIDALSYLTEFFTNVK------NGPYT-ELE--- 587 (797)
T ss_dssp HHHHHHHHCCCSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH------HTTCC-HHH---
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHH-HHHHHHHHHhhhccccHHHHHHHHHHHHHHHh------ccCcc-HHH---
Confidence 1111111100000 00000000 000001111112222211100 00000 000
Q ss_pred CCCCCCCccceeeccCcCCccccccccCCCCccchhhhhhhhhcccccccccCcceehhhHHHhhhc--cCCCceeEEec
Q 001337 907 SSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCS--NMGDKSLVFSQ 984 (1097)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S~Kl~~L~eiL~~~~--~~geKVLIFSq 984 (1097)
. .....+. .....+ ..........++|+..|.++|.... ..+.|+|||++
T Consensus 588 --------~--------~l~~~~~-----------~~~~~l-~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~ 639 (797)
T 4a2q_A 588 --------Q--------HLTAKFQ-----------EKEPEL-IALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (797)
T ss_dssp --------H--------HHHHHHH-----------TTHHHH-HHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEES
T ss_pred --------H--------HHHHHHH-----------HHHHHH-HHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEEC
Confidence 0 0000000 000000 0000111235889999999998753 56799999999
Q ss_pred CCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccceeeEEEeeeccccccceecccceE
Q 001337 985 SIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRV 1064 (1097)
Q Consensus 985 ~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg~GLNL~~An~V 1064 (1097)
++.+++.|..+|...+.-.........|..+..++|+++..+|.+++++|+++ +.++ +|++|+++++|||++++++|
T Consensus 640 ~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~--g~~~-vLVaT~~~~~GIDlp~v~~V 716 (797)
T 4a2q_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS--KDNR-LLIATSVADEGIDIVQCNLV 716 (797)
T ss_dssp SHHHHHHHHHHHHTCSTTCSCCCEEC------------------------------CCS-EEEEECC-------CCCSEE
T ss_pred cHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhcc--CCce-EEEEcCchhcCCCchhCCEE
Confidence 99999999999986321111111123566777888999999999999999982 3333 58999999999999999999
Q ss_pred EEEcCCcCCcccHHHHHHHhhhccccccccc
Q 001337 1065 IIVDGSWNPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1065 Ii~D~~WNP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
|+||++|||..+.|++|| +|. +++.+|
T Consensus 717 I~yd~p~s~~~~iQr~GR-GR~---~~g~~i 743 (797)
T 4a2q_A 717 VLYEYSGNVTKMIQVRGR-GRA---AGSKCI 743 (797)
T ss_dssp EEESCCSCHHHHHTC-----------CCCEE
T ss_pred EEeCCCCCHHHHHHhcCC-CCC---CCceEE
Confidence 999999999999999999 555 444443
No 12
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.97 E-value=8.9e-31 Score=316.91 Aligned_cols=441 Identities=12% Similarity=0.103 Sum_probs=218.7
Q ss_pred ccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccc-cceeeEeecch-hhhhhh
Q 001337 564 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL-GLRTALIVTPV-NVLHNW 641 (1097)
Q Consensus 564 ~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~-~~k~~LIV~P~-sLv~qW 641 (1097)
..|+|||.+++.+++ .+..+|++++||+|||++++..+...+..... ..+++|||||. .|+.||
T Consensus 3 ~~~~~~Q~~~i~~~~--------------~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 68 (555)
T 3tbk_A 3 LKPRNYQLELALPAK--------------KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQ 68 (555)
T ss_dssp CCCCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHH
T ss_pred CCCcHHHHHHHHHHh--------------CCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHH
Confidence 368999999999874 24679999999999999988888766554321 14589999997 799999
Q ss_pred HHhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEe
Q 001337 642 KQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 721 (1097)
Q Consensus 642 ~~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIi 721 (1097)
.+++.++++.. .+.+..+.|....... ...+....+|+|+||+.+......... .....+++||+
T Consensus 69 ~~~~~~~~~~~--~~~~~~~~g~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~-----------~~~~~~~~vVi 133 (555)
T 3tbk_A 69 ATVFSRYFERL--GYNIASISGATSDSVS--VQHIIEDNDIIILTPQILVNNLNNGAI-----------PSLSVFTLMIF 133 (555)
T ss_dssp HHHHHHHHHTT--TCCEEEECTTTGGGSC--HHHHHHHCSEEEECHHHHHHHHHTSSS-----------CCGGGCSEEEE
T ss_pred HHHHHHHhccC--CcEEEEEcCCCcchhh--HHHHhcCCCEEEECHHHHHHHHhcCcc-----------cccccCCEEEE
Confidence 99999998642 3566666665432211 122234679999999987643211110 01236899999
Q ss_pred cccchhcccchhHHHHHhhh---------ccceeeeeccCccccchhhhhhhhhh-------hhhccCC----Cchhhhh
Q 001337 722 DEAHMIKNTRADTTQALKQV---------KCQRRIALTGSPLQNNLMEYYCMVDF-------VREGFLG----SSHEFRN 781 (1097)
Q Consensus 722 DEAH~iKN~~S~~~kal~~l---------~a~~RllLTGTPiqNnl~El~~Ll~f-------L~p~~lg----s~~~F~~ 781 (1097)
||||++.+..+........+ ...++++|||||.+++..++..+++. +....+. ....+..
T Consensus 134 DEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~ 213 (555)
T 3tbk_A 134 DECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQ 213 (555)
T ss_dssp TTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHT
T ss_pred ECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHh
Confidence 99999988764222221222 22479999999999886665554443 3322111 1122332
Q ss_pred hccCCCCCCcccCCcccchhhcccchhHHHHHHhhHHhhh--chhhhcc------CCCCceEEEEEEecChH--------
Q 001337 782 RFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRM--DMNVVKK------DLPPKTVFVITVKLSPL-------- 845 (1097)
Q Consensus 782 ~f~~pi~~g~~~~s~~~d~~~~~~r~~~L~~~L~~fvlRr--~~~~v~~------~LP~k~e~vv~v~Ls~~-------- 845 (1097)
.+..|........ ......+...+..++.+. ....+.. .++. ..+.+.
T Consensus 214 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~g~~~~~~~~~~ 277 (555)
T 3tbk_A 214 VVYKPQKISRKVA---------SRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQN-------REFGTQKYEQWIVG 277 (555)
T ss_dssp TCCCCCEEEEECC---------CCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCS-------CCSSSHHHHHHHHH
T ss_pred hcCCCceEEEEec---------CcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc-------ccccchhhhHHHHH
Confidence 2222211110000 001112222222221110 0000000 0000 001111
Q ss_pred ---------------HHHHHHHhhhhcCCcccccchH---HHHHhhhhhHHHHHHHhcCcceeeecccCCCCCccccccC
Q 001337 846 ---------------QRRLYKRFLDLHGFTNDRVSNE---KIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDS 907 (1097)
Q Consensus 846 ---------------Q~~lY~~il~~~~~~~~~~~~~---~~~~~~l~~l~~Lrqi~~hP~Ll~~~~~~~~~~~e~~~d~ 907 (1097)
+..+|..+...... ....... .........+..+...+....- ........
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~---- 346 (555)
T 3tbk_A 278 VHKACSVFQMADKEEESRVCKALFLYTSH-LRKYNDALIISEDAQMTDALNYLKAFFHDVRE------AAFDETER---- 346 (555)
T ss_dssp HHHHHHTCCCSSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----------HHH----
T ss_pred HHHHhhhhhccchhhHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh------cccchHHH----
Confidence 11111111000000 0000000 0000011111112222111000 00000000
Q ss_pred CCCCCCccceeeccCcCCccccccccCCCCccchhhhhhhhhcccccccccCcceehhhHHHhhhcc--CCCceeEEecC
Q 001337 908 SSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSN--MGDKSLVFSQS 985 (1097)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S~Kl~~L~eiL~~~~~--~geKVLIFSq~ 985 (1097)
.....+.. .... +..........++|+..|.++|..... .+.|+|||+++
T Consensus 347 ----------------~~~~~~~~-----------~~~~-~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 398 (555)
T 3tbk_A 347 ----------------ELTRRFEE-----------KLEE-LEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKT 398 (555)
T ss_dssp ----------------HHHHHHHT-----------THHH-HHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred ----------------HHHHHHhh-----------hhhh-hhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCc
Confidence 00000000 0000 000001112347899999999987653 45899999999
Q ss_pred CCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccceeeEEEeeeccccccceecccceEE
Q 001337 986 IPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVI 1065 (1097)
Q Consensus 986 ~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg~GLNL~~An~VI 1065 (1097)
..+++.|..+|...+...........|..+..++|+++..+|.+++++|+++ +.++ +|++|+++++|||++++++||
T Consensus 399 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~--g~~~-vLvaT~~~~~GlDlp~v~~VI 475 (555)
T 3tbk_A 399 RALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRAS--GDNN-ILIATSVADEGIDIAECNLVI 475 (555)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCEEECCC----------------------------CCS-EEEECCCTTCCEETTSCSEEE
T ss_pred HHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcC--CCee-EEEEcchhhcCCccccCCEEE
Confidence 9999999999986421100111123456677778899999999999999972 3344 478999999999999999999
Q ss_pred EEcCCcCCcccHHHHHHHhhhccccccccc
Q 001337 1066 IVDGSWNPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1066 i~D~~WNP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
+||++|||..+.|++|| |+.+++.+|
T Consensus 476 ~~d~p~s~~~~~Qr~GR----gR~~~g~~~ 501 (555)
T 3tbk_A 476 LYEYVGNVIKMIQTRGR----GRARDSKCF 501 (555)
T ss_dssp EESCCSSCCCEECSSCC----CTTTSCEEE
T ss_pred EeCCCCCHHHHHHhcCc----CcCCCceEE
Confidence 99999999999999999 555665554
No 13
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.96 E-value=9.6e-31 Score=336.05 Aligned_cols=442 Identities=13% Similarity=0.141 Sum_probs=207.1
Q ss_pred cCccc--cccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccc-cceeeEeecc
Q 001337 558 IPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL-GLRTALIVTP 634 (1097)
Q Consensus 558 vP~~l--~~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~-~~k~~LIV~P 634 (1097)
.|..+ ...|+|||.+++.+++ .+..+|++++||+|||++++..+...+..... ..+++|||+|
T Consensus 239 ~~~~l~~~~~~r~~Q~~ai~~il--------------~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~P 304 (936)
T 4a2w_A 239 KPPPVYETKKARSYQIELAQPAI--------------NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (936)
T ss_dssp ---------CCCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECS
T ss_pred CcccccCCCCCCHHHHHHHHHHH--------------cCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 34444 5679999999999884 25679999999999999988877666544321 1468999999
Q ss_pred h-hhhhhhHHhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhc
Q 001337 635 V-NVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 713 (1097)
Q Consensus 635 ~-sLv~qW~~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~ 713 (1097)
. .|+.||.++|.+|++.. .+.+..++|...... ....+....+|+|+||+.+.......... ..
T Consensus 305 t~~L~~Q~~~~~~~~~~~~--~~~v~~~~G~~~~~~--~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~-----------~l 369 (936)
T 4a2w_A 305 KVPVYEQQKNVFKHHFERQ--GYSVQGISGENFSNV--SVEKVIEDSDIIVVTPQILVNSFEDGTLT-----------SL 369 (936)
T ss_dssp SHHHHHHHHHHHHHHHHTT--TCCEEEECCC-------CCHHHHHHCSEEEECHHHHHHHHHSSSCC-----------CG
T ss_pred CHHHHHHHHHHHHHHhccc--CceEEEEECCcchhh--HHHHhccCCCEEEecHHHHHHHHHcCccc-----------cc
Confidence 5 59999999999998742 366777666542211 11222346799999999876432111100 12
Q ss_pred cCCCEEEecccchhcccchhHHHHHhhh-c--------cceeeeeccCccccchhhhhhhhhhhhh-------ccCC---
Q 001337 714 DGPDILVCDEAHMIKNTRADTTQALKQV-K--------CQRRIALTGSPLQNNLMEYYCMVDFVRE-------GFLG--- 774 (1097)
Q Consensus 714 ~~~dlVIiDEAH~iKN~~S~~~kal~~l-~--------a~~RllLTGTPiqNnl~El~~Ll~fL~p-------~~lg--- 774 (1097)
..|++||+||||++.+..+ ....+..+ . ..++++|||||.+++..++..+++.+.. ..+.
T Consensus 370 ~~~~liViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~ 448 (936)
T 4a2w_A 370 SIFTLMIFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVR 448 (936)
T ss_dssp GGCSEEEEETGGGCSTTCH-HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCC
T ss_pred cCCCEEEEECccccCCCcc-HHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeeccc
Confidence 3689999999999998765 33333232 2 2679999999998877666655554321 1111
Q ss_pred -CchhhhhhccCCCCCCcccCCcccchhhcccchhHHHHHHhhHHhhhchhhhccCCCCceEEE---EEEecChHHHHHH
Q 001337 775 -SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFV---ITVKLSPLQRRLY 850 (1097)
Q Consensus 775 -s~~~F~~~f~~pi~~g~~~~s~~~d~~~~~~r~~~L~~~L~~fvlRr~~~~v~~~LP~k~e~v---v~v~Ls~~Q~~lY 850 (1097)
....+...+..|........ ......+...+..++... ...+...+. .... -...+.+ ..|
T Consensus 449 ~~~~~l~~~~~~p~~~~~~~~---------~~~~~~~~~~l~~l~~~i-~~~~~~~l~--~~~l~~~~~~~~g~---~~y 513 (936)
T 4a2w_A 449 ENIQELQRFMNKPEIDVRLVK---------RRIHNPFAAIISNLMSET-EALMRTIAY--VDTLSQNSKKDFGT---QNY 513 (936)
T ss_dssp SSHHHHHHHSCCCCEEEEECC---------CCSCCHHHHHHHHHHHHH-HHHHHHC--------------CCSS---HHH
T ss_pred ccHHHHHHhccCCcceEEecc---------cccCcHHHHHHHHHHHHH-HHHHHHHHh--hhhhhhccccccch---HHH
Confidence 11233333333322111000 011223333343333221 111110111 0000 0011111 112
Q ss_pred HHhhhhcC-----Cccccc-chHHHHHhh----------------------hhhHHHHHHHhcCcceeeecccCCCCCcc
Q 001337 851 KRFLDLHG-----FTNDRV-SNEKIRKSF----------------------FAGYQALAQIWNHPGILQLTKDKGYPSRE 902 (1097)
Q Consensus 851 ~~il~~~~-----~~~~~~-~~~~~~~~~----------------------l~~l~~Lrqi~~hP~Ll~~~~~~~~~~~e 902 (1097)
+..+.... ...... ........+ ...+..+...+... ...+.. ..
T Consensus 514 ~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~------~~~~~~-~~ 586 (936)
T 4a2w_A 514 EHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNV------KNGPYT-EL 586 (936)
T ss_dssp HHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH------HHTTCC-HH
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH------hhccCC-HH
Confidence 11111000 000000 000000000 01111111111100 000000 00
Q ss_pred ccccCCCCCCCccceeeccCcCCccccccccCCCCccchhhhhhhhhcccccccccCcceehhhHHHhhhc--cCCCcee
Q 001337 903 DAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCS--NMGDKSL 980 (1097)
Q Consensus 903 ~~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S~Kl~~L~eiL~~~~--~~geKVL 980 (1097)
+ ..+.. . +. .....+. .........++|+..|.++|.+.. ..++|+|
T Consensus 587 e-----------------------~~l~~-----~-~~-~~~~~l~-~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvL 635 (936)
T 4a2w_A 587 E-----------------------QHLTA-----K-FQ-EKEPELI-ALSKDETNENPKLEELVCILDDAYRYNPQTRTL 635 (936)
T ss_dssp H-----------------------HHHHH-----H-HH-HHHHHHH-HHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEE
T ss_pred H-----------------------HHHHH-----H-HH-HHHHHHH-HhhhccCCCCHHHHHHHHHHHHHhccCCCCeEE
Confidence 0 00000 0 00 0000000 000111234889999999998864 4579999
Q ss_pred EEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccceeeEEEeeeccccccceecc
Q 001337 981 VFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHS 1060 (1097)
Q Consensus 981 IFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg~GLNL~~ 1060 (1097)
||++++.+++.|..+|.....-..-......|..+..++|+++..+|.+++++|+++ +.++ +|++|+++++||||+.
T Consensus 636 IF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~--g~~~-VLVaT~~~~eGIDlp~ 712 (936)
T 4a2w_A 636 LFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS--KDNR-LLIATSVADEGIDIVQ 712 (936)
T ss_dssp EEESSHHHHHHHHHHHHHCSTTSSCCCEEC------------------------------CCS-EEEEECC------CCC
T ss_pred EEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhcc--CCee-EEEEeCchhcCCcchh
Confidence 999999999999999986421101111123466677778889999999999999972 3343 5899999999999999
Q ss_pred cceEEEEcCCcCCcccHHHHHHHhhh
Q 001337 1061 ANRVIIVDGSWNPTYDLQAIYRAWRC 1086 (1097)
Q Consensus 1061 An~VIi~D~~WNP~~~~QAiGRa~Ri 1086 (1097)
+++||+||++|||..+.|++|| +|.
T Consensus 713 v~~VI~yD~p~s~~~~iQr~GR-GR~ 737 (936)
T 4a2w_A 713 CNLVVLYEYSGNVTKMIQVRGR-GRA 737 (936)
T ss_dssp CSEEEEESCCSCSHHHHCC-------
T ss_pred CCEEEEeCCCCCHHHHHHhcCC-CCC
Confidence 9999999999999999999999 555
No 14
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=99.96 E-value=3.3e-31 Score=259.33 Aligned_cols=119 Identities=28% Similarity=0.640 Sum_probs=112.4
Q ss_pred ccccCcceeeccccceEE-----EeeccceeEEEEecCcccchhhcccccCCCCCcceeeeccCCCCeeeccccccchhh
Q 001337 326 SQSLSEKFYCTACNNVAI-----EVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCT 400 (1097)
Q Consensus 326 ~~~~~~~~~C~~Cg~~~~-----~~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~gg~l~~Cd~C~~~fc~ 400 (1097)
..++.+.++||+||+.++ .++.||+|+|++|+.|+.+|+++.|.+|+||+++||+||++||+|+|||+|||+||.
T Consensus 8 ~~~~~~~i~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~~~~~~~d~Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~ 87 (142)
T 2lbm_A 8 GDGLHGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCK 87 (142)
T ss_dssp SSSCCCCCBCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHHHSCCCBCTTSCBCSCSSSCCCSSEEECSSSCCEEEH
T ss_pred ccCCcCCCEecCCCCccccccccchhcCCCccccccHHHHHHHhcCCceecCCCCCCeecccCCCCcEEeCCCCCCeeeH
Confidence 356778999999999874 578999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhhhhhh-hhcccceeeecChhhHHHHHHHHhhhcCC
Q 001337 401 TCVKRNISEACLSDE-VQASCWQCCCCSPSLLKRLTSELGRAMGS 444 (1097)
Q Consensus 401 ~Cl~~~~~~~~~~~~-~~~~~W~C~~C~~~~~~~l~~~~~~~~~~ 444 (1097)
.||.+++|++.++.+ .++++|+|++|.++|+++|++.++++|+.
T Consensus 88 ~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~pl~~l~~~c~~~~~~ 132 (142)
T 2lbm_A 88 KCILRNLGRKELSTIMDENNQWYCYICHPEPLLDLVTACNSVFEN 132 (142)
T ss_dssp HHHHHHTCHHHHHHHHTSTTCCCCTTTCCCTTHHHHHHHHHHHHH
T ss_pred hhcCCCCChhhhhhcccCCCCCEeecccCccHHHHHHHHHHHHHH
Confidence 999999999999877 58999999999999999999999999987
No 15
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.96 E-value=1e-29 Score=306.24 Aligned_cols=338 Identities=12% Similarity=0.129 Sum_probs=229.8
Q ss_pred cccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch-hhhhhh
Q 001337 563 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNW 641 (1097)
Q Consensus 563 ~~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~-sLv~qW 641 (1097)
...|+|||.+++.+++. +.++||+++||+|||++++.++...+.. +.+++|||||. .|+.||
T Consensus 111 ~~~l~~~Q~~ai~~~~~--------------~~~~ll~~~tGsGKT~~~~~~~~~~~~~---~~~~vlvl~P~~~L~~Q~ 173 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLV--------------NRRRILNLPTSAGRSLIQALLARYYLEN---YEGKILIIVPTTALTTQM 173 (510)
T ss_dssp EECCCHHHHHHHHHHHH--------------HSEEEEECCSTTTHHHHHHHHHHHHHHH---CSSEEEEEESSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh--------------cCCcEEEeCCCCCHHHHHHHHHHHHHhC---CCCeEEEEECcHHHHHHH
Confidence 45799999999998753 2578999999999999998877766543 22499999996 688999
Q ss_pred HHhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEe
Q 001337 642 KQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 721 (1097)
Q Consensus 642 ~~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIi 721 (1097)
.++|.+|... ....+..+.+....... .....+|+|+||+.+.... ......|++||+
T Consensus 174 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~-----~~~~~~I~i~T~~~l~~~~---------------~~~~~~~~liIi 231 (510)
T 2oca_A 174 ADDFVDYRLF--SHAMIKKIGGGASKDDK-----YKNDAPVVVGTWQTVVKQP---------------KEWFSQFGMMMN 231 (510)
T ss_dssp HHHHHHTTSS--CGGGEEECGGGCCTTGG-----GCTTCSEEEEEHHHHTTSC---------------GGGGGGEEEEEE
T ss_pred HHHHHHhhcC--CccceEEEecCCccccc-----cccCCcEEEEeHHHHhhch---------------hhhhhcCCEEEE
Confidence 9999998422 12455555544322111 1245789999999865310 011236899999
Q ss_pred cccchhcccchhHHHHHhhh-ccceeeeeccCccccchhhhhhhhhhhhhccCCCchhhhhhccCCCCCCcccCCcccch
Q 001337 722 DEAHMIKNTRADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDV 800 (1097)
Q Consensus 722 DEAH~iKN~~S~~~kal~~l-~a~~RllLTGTPiqNnl~El~~Ll~fL~p~~lgs~~~F~~~f~~pi~~g~~~~s~~~d~ 800 (1097)
||||++.+. ...+.+..+ .+.++++||||| .+...+++.+..++.+..+.. +...
T Consensus 232 DE~H~~~~~--~~~~il~~~~~~~~~l~lSATp-~~~~~~~~~~~~~~~~~~~~~----------~~~~----------- 287 (510)
T 2oca_A 232 DECHLATGK--SISSIISGLNNCMFKFGLSGSL-RDGKANIMQYVGMFGEIFKPV----------TTSK----------- 287 (510)
T ss_dssp ETGGGCCHH--HHHHHGGGCTTCCEEEEEESCG-GGCSSCHHHHHHHHCSEECCC----------CCC------------
T ss_pred ECCcCCCcc--cHHHHHHhcccCcEEEEEEeCC-CCCcccHHHhHHhhCCeEEee----------CHHH-----------
Confidence 999999873 344555666 677899999999 555566666666555432110 0000
Q ss_pred hhcccchhHHHHHHhhHHhhhchhhhccCCCCceEEEEEEecChHHHHHHHHhhhhcCCcccccchHHHHHhhhhhHHHH
Q 001337 801 KIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQAL 880 (1097)
Q Consensus 801 ~~~~~r~~~L~~~L~~fvlRr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~il~~~~~~~~~~~~~~~~~~~l~~l~~L 880 (1097)
+ + -...+++.....+.+.+++........ .. +.. .+
T Consensus 288 ---------~---~-----------~~~~l~~~~~~~~~~~~~~~~~~~~~~---------~~---------~~~---~~ 323 (510)
T 2oca_A 288 ---------L---M-----------EDGQVTELKINSIFLRYPDEFTTKLKG---------KT---------YQE---EI 323 (510)
T ss_dssp -------------------------------CCEEEEEEEECCHHHHHHHTT---------CC---------HHH---HH
T ss_pred ---------H---h-----------hCCcCCCceEEEEeecCChHHhccccc---------cc---------hHH---HH
Confidence 0 0 001466777777778777654311100 00 000 00
Q ss_pred HHHhcCcceeeecccCCCCCccccccCCCCCCCccceeeccCcCCccccccccCCCCccchhhhhhhhhcccccccccCc
Q 001337 881 AQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSG 960 (1097)
Q Consensus 881 rqi~~hP~Ll~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S~ 960 (1097)
..+. ....
T Consensus 324 ~~~~------------------------------------------------------------------------~~~~ 331 (510)
T 2oca_A 324 KIIT------------------------------------------------------------------------GLSK 331 (510)
T ss_dssp HHHH------------------------------------------------------------------------TCHH
T ss_pred HHHh------------------------------------------------------------------------ccHH
Confidence 0000 0012
Q ss_pred ceehhhHHHhhhccC-CCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhccccc
Q 001337 961 KMVLLLDILTMCSNM-GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1039 (1097)
Q Consensus 961 Kl~~L~eiL~~~~~~-geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n 1039 (1097)
|...+.+++...... +.++|||+. +..+..|.+.|.. .+..+..++|+++..+|+++++.|++
T Consensus 332 ~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~------------~~~~v~~~~g~~~~~~r~~i~~~f~~--- 395 (510)
T 2oca_A 332 RNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKN------------EYDKVYYVSGEVDTETRNIMKTLAEN--- 395 (510)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHT------------TCSSEEEESSSTTHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHH------------cCCCeEEEECCCCHHHHHHHHHHHhC---
Confidence 344455666555443 567777777 7778889999985 34589999999999999999999996
Q ss_pred ceeeEEEeee-ccccccceecccceEEEEcCCcCCcccHHHHHHHhhhcccc-cccccc
Q 001337 1040 KRVKCTLIST-RAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQ-SQFLLT 1096 (1097)
Q Consensus 1040 ~~v~VlLiSt-kagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK-~V~VYr 1096 (1097)
+.++ +|++| .++++|||++.+++||+++++|++....|++||++|.||.+ .|+||.
T Consensus 396 g~~~-vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 396 GKGI-IIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCSC-EEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CCCC-EEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 3444 46666 99999999999999999999999999999999999999998 687774
No 16
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.95 E-value=4e-29 Score=312.48 Aligned_cols=437 Identities=15% Similarity=0.170 Sum_probs=226.9
Q ss_pred cccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccc--cceeeEeecch-hhhh
Q 001337 563 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL--GLRTALIVTPV-NVLH 639 (1097)
Q Consensus 563 ~~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~--~~k~~LIV~P~-sLv~ 639 (1097)
...|+|||.+++.+++ .+.++|++++||+|||++++..+..++..... ..+++|||+|. .|+.
T Consensus 5 ~~~l~~~Q~~~i~~il--------------~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~ 70 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPAL--------------EGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVE 70 (699)
T ss_dssp --CCCHHHHHHHHHHH--------------SSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHH
T ss_pred CCCccHHHHHHHHHHH--------------hCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHH
Confidence 3569999999999885 25679999999999999998888776654321 12589999996 4899
Q ss_pred hh-HHhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCE
Q 001337 640 NW-KQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDI 718 (1097)
Q Consensus 640 qW-~~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dl 718 (1097)
|| .++|.+|++.. +.+..+.+...... ....+....+|+|+|++.+......... .....+....|++
T Consensus 71 Q~~~~~l~~~~~~~---~~v~~~~g~~~~~~--~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~------~~~~~~~~~~~~l 139 (699)
T 4gl2_A 71 QLFRKEFQPFLKKW---YRVIGLSGDTQLKI--SFPEVVKSCDIIISTAQILENSLLNLEN------GEDAGVQLSDFSL 139 (699)
T ss_dssp HHHHHTHHHHHTTT---SCEEEEC----CCC--CHHHHHHSCSEEEEEHHHHHHHTC--------------CCCGGGCSE
T ss_pred HHHHHHHHHHcCcC---ceEEEEeCCcchhh--HHHhhhcCCCEEEECHHHHHHHHhcccc------ccccceecccCcE
Confidence 99 99999998752 56666665432211 1122336789999999998643211100 0001112237999
Q ss_pred EEecccchhcccch--hHHH-HHhh-h-------------ccceeeeeccCccccchhh-------hhhhhhhhhhccCC
Q 001337 719 LVCDEAHMIKNTRA--DTTQ-ALKQ-V-------------KCQRRIALTGSPLQNNLME-------YYCMVDFVREGFLG 774 (1097)
Q Consensus 719 VIiDEAH~iKN~~S--~~~k-al~~-l-------------~a~~RllLTGTPiqNnl~E-------l~~Ll~fL~p~~lg 774 (1097)
||+||||++.+... .+.. .+.. + ...++++|||||..++..+ +..++..+.+..+.
T Consensus 140 vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~ 219 (699)
T 4gl2_A 140 IIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIK 219 (699)
T ss_dssp EEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCC
T ss_pred EEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEE
Confidence 99999999855332 1111 1111 1 3357899999999874433 34444444442111
Q ss_pred C----chhhhhhccCCCCCCcccCCcccchhhcccchhHHHHHHhhHHhhhchhhhccCCCCceEEEEEEecChHHHHHH
Q 001337 775 S----SHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLY 850 (1097)
Q Consensus 775 s----~~~F~~~f~~pi~~g~~~~s~~~d~~~~~~r~~~L~~~L~~fvlRr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY 850 (1097)
. ...+...+..|........... ...+...+..++...... + ++.| +.......|
T Consensus 220 ~~~~~~~~l~~~~~~p~~~~~~~~~~~---------~~~~~~~l~~l~~~i~~~-~--~~~~---------~~~~g~~~~ 278 (699)
T 4gl2_A 220 TVKENLDQLKNQIQEPCKKFAIADATR---------EDPFKEKLLEIMTRIQTY-C--QMSP---------MSDFGTQPY 278 (699)
T ss_dssp CCCTTHHHHHHHSCCCEEEEEEEC--------------CHHHHHHHHHHHHHHH-H--TCCC---------CSCSSSHHH
T ss_pred eecCchHHHhhhcCCCceEEEEccccc---------CChHHHHHHHHHHHHHHH-h--ccCc---------chhccchHH
Confidence 1 1223333322221111000000 001111121111110000 0 1111 011111112
Q ss_pred HHhhhhc---C----CcccccchHHHHH-----------hhhhhHHHHHHHhcCcceeeecccCCCCCccccccCCCCCC
Q 001337 851 KRFLDLH---G----FTNDRVSNEKIRK-----------SFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDEN 912 (1097)
Q Consensus 851 ~~il~~~---~----~~~~~~~~~~~~~-----------~~l~~l~~Lrqi~~hP~Ll~~~~~~~~~~~e~~~d~~~~~~ 912 (1097)
....... . ............. .....+..++......... . ... .+..... ...
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~-~~~--~~~~~~~--~~~ 350 (699)
T 4gl2_A 279 EQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDK---K-FAV--IEDDLKK--PLK 350 (699)
T ss_dssp HHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH---H-C----------------
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---h-ccc--ccccccc--ccc
Confidence 2111100 0 0000000000000 0001111111111100000 0 000 0000000 000
Q ss_pred CccceeeccCcCCccccccccCCCCccchhhhhhhhh-------cccccccccCcceehhhHHHhhhccC---CCceeEE
Q 001337 913 MDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLH-------EHTYKELDYSGKMVLLLDILTMCSNM---GDKSLVF 982 (1097)
Q Consensus 913 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~-------~~~~~~~~~S~Kl~~L~eiL~~~~~~---geKVLIF 982 (1097)
. .....+...... .........++|+..|.++|...... +.++|||
T Consensus 351 ~------------------------~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF 406 (699)
T 4gl2_A 351 L------------------------DETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIF 406 (699)
T ss_dssp C------------------------CHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEE
T ss_pred c------------------------chhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 0 000011111110 00111112478999999999875432 7899999
Q ss_pred ecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCC--------ccchHHHHHHHhhcccccceeeEEEeeeccccc
Q 001337 983 SQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGR--------TESSERQKLVERFNEPLNKRVKCTLISTRAGSL 1054 (1097)
Q Consensus 983 Sq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGs--------ts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg~ 1054 (1097)
+++..+++.|..+|.... .+-..|+.+..++|+ ++..+|.+++++|++ +.++ +|++|.++++
T Consensus 407 ~~s~~~~~~l~~~L~~~~------~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~---g~~~-VLVaT~~~~~ 476 (699)
T 4gl2_A 407 TKTRQSAYALSQWITENE------KFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRT---GKIN-LLIATTVAEE 476 (699)
T ss_dssp CSCHHHHHHHHHHHHSSC------SCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC------C-CSEEECSCCT
T ss_pred ECcHHHHHHHHHHHHhCc------cccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhc---CCCc-EEEEcccccc
Confidence 999999999999998631 011238899999999 999999999999998 3444 4789999999
Q ss_pred cceecccceEEEEcCCcCCcccHHHHHHHhhhc
Q 001337 1055 GINLHSANRVIIVDGSWNPTYDLQAIYRAWRCM 1087 (1097)
Q Consensus 1055 GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiG 1087 (1097)
|||+++++.||+||++|||..+.|++||+.|-|
T Consensus 477 GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 477 GLDIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp TSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred CCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 999999999999999999999999999975554
No 17
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=99.95 E-value=3.6e-31 Score=297.39 Aligned_cols=143 Identities=21% Similarity=0.394 Sum_probs=111.7
Q ss_pred EecCCCCcccccccccc--ccccccCcccccccccCCcccccccCcceeeccccceEEEeeccceeEEEEecCcccchhh
Q 001337 288 IIGSDEADVVKDECSTK--LEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEK 365 (1097)
Q Consensus 288 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~~~Hp~l~~~~C~~C~~~~~~ 365 (1097)
+-+.+++|+++..+.+. -+....++++|+.++..+ .++.+++||+||++ +.++.||+|+|++|+.|+.+|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~e~~C~~CG~~-~~~~~HPl~~v~lC~~Ck~~y~~ 82 (386)
T 2pv0_B 9 PEAEPSMDVILVGSSELSSSVSPGTGRDLIAYEVKAN-----QRNIEDICICCGSL-QVHTQHPLFEGGICAPCKDKFLD 82 (386)
T ss_dssp -------------------------CHHHHHHHHHSS-----CCCGGGSBTTTCCS-CCCSBCSSBSSBCCHHHHHHHHT
T ss_pred cccCCceeEEEecCcccCCCCCCCccHHHHHHHHHhc-----cCcccceeCCCCCc-CccccCCCcCcchhhHHHHHHhc
Confidence 34455666665555443 244567788999998888 44456999999997 55889999999999999999999
Q ss_pred cccccCCCCCcceeeeccCCCCeeecc--ccccchhhhhhhccchhhhhhhhhhcccceeeecChhhHHHHHH
Q 001337 366 KMHVKDADCSECYCVWCGRSSDLVSCK--SCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTS 436 (1097)
Q Consensus 366 ~~~~~d~d~~~~~C~~C~~gg~l~~Cd--~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~~~~~l~~ 436 (1097)
++|.+|+||+++||+|||+||+|+||| .|+|+||++||++|+|++++.++...++|+||+|.|+|+++|++
T Consensus 83 ~~f~~D~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p~~~ll~ 155 (386)
T 2pv0_B 83 ALFLYDDDGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSSRSGLLQ 155 (386)
T ss_dssp TTTCBCSSSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCCEETTEE
T ss_pred cCcccCCCCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcchHhhhh
Confidence 999999999999999999999999999 79999999999999999999999999999999999999777765
No 18
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.95 E-value=5.8e-29 Score=310.85 Aligned_cols=429 Identities=14% Similarity=0.127 Sum_probs=202.3
Q ss_pred ccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccc-cceeeEeecch-hhhhhh
Q 001337 564 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL-GLRTALIVTPV-NVLHNW 641 (1097)
Q Consensus 564 ~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~-~~k~~LIV~P~-sLv~qW 641 (1097)
..|+|||.+++.+++ .+.++|++++||+|||++++.++...+..... ..+++|||+|. .|+.||
T Consensus 12 ~~lr~~Q~~~i~~~l--------------~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~ 77 (696)
T 2ykg_A 12 FKPRNYQLELALPAM--------------KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQN 77 (696)
T ss_dssp -CCCHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHH
T ss_pred CCccHHHHHHHHHHH--------------cCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHH
Confidence 468999999999885 25689999999999999988888766544321 12589999996 799999
Q ss_pred HHhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEe
Q 001337 642 KQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 721 (1097)
Q Consensus 642 ~~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIi 721 (1097)
.+++.++++. ..+.+..+.|...... .........+|+|+||+.+......... .....|++||+
T Consensus 78 ~~~~~~~~~~--~~~~v~~~~g~~~~~~--~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~-----------~~l~~~~~vVi 142 (696)
T 2ykg_A 78 KSVFSKYFER--HGYRVTGISGATAENV--PVEQIVENNDIIILTPQILVNNLKKGTI-----------PSLSIFTLMIF 142 (696)
T ss_dssp HHHHHHHTTT--TTCCEEEECSSSCSSS--CHHHHHHTCSEEEECHHHHHHHHHTTSS-----------CCGGGCSEEEE
T ss_pred HHHHHHHhcc--CCceEEEEeCCccccc--cHHHhccCCCEEEECHHHHHHHHhcCcc-----------cccccccEEEE
Confidence 9999999864 2366666665432111 0111224689999999998643211100 01237899999
Q ss_pred cccchhcccchhHHHHHhhh---------ccceeeeeccCccccch-------hhhhhhhhhhhhccCCC---c-hhhhh
Q 001337 722 DEAHMIKNTRADTTQALKQV---------KCQRRIALTGSPLQNNL-------MEYYCMVDFVREGFLGS---S-HEFRN 781 (1097)
Q Consensus 722 DEAH~iKN~~S~~~kal~~l---------~a~~RllLTGTPiqNnl-------~El~~Ll~fL~p~~lgs---~-~~F~~ 781 (1097)
||||++.+..+........+ ...++++|||||..++. .++..++..+....+.. . .....
T Consensus 143 DEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~ 222 (696)
T 2ykg_A 143 DECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQ 222 (696)
T ss_dssp ETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHH
T ss_pred eCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHh
Confidence 99999987764332221122 34788999999985443 44444444433322211 1 12222
Q ss_pred hccCCCCCCcccCCcccch--hhcc---cchhHHH--------------------HHHhhHHhhhchhhhccCCCCceEE
Q 001337 782 RFQNPIENGQHTNSTSEDV--KIMN---QRSHILY--------------------EQLKGFVQRMDMNVVKKDLPPKTVF 836 (1097)
Q Consensus 782 ~f~~pi~~g~~~~s~~~d~--~~~~---~r~~~L~--------------------~~L~~fvlRr~~~~v~~~LP~k~e~ 836 (1097)
....|.............. ..+. .....+. ..+..++.+..+......+|.+.
T Consensus 223 ~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 300 (696)
T 2ykg_A 223 VVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKD-- 300 (696)
T ss_dssp HSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------C--
T ss_pred hcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccch--
Confidence 2222211000000000000 0000 0000000 00111222222221111233221
Q ss_pred EEEEecChHHHHHHHHhhhhcCCcccccchHH---HHHhhhhhHHHHHHHhcCcceeeecccCCCCCccccccCCCCCCC
Q 001337 837 VITVKLSPLQRRLYKRFLDLHGFTNDRVSNEK---IRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENM 913 (1097)
Q Consensus 837 vv~v~Ls~~Q~~lY~~il~~~~~~~~~~~~~~---~~~~~l~~l~~Lrqi~~hP~Ll~~~~~~~~~~~e~~~d~~~~~~~ 913 (1097)
.+..++..+...... ........ ........+..+.+...... .....
T Consensus 301 --------~~~~~~~~l~~~~~~-l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~------~~~~~-------------- 351 (696)
T 2ykg_A 301 --------EESRICKALFLYTSH-LRKYNDALIISEHARMKDALDYLKDFFSNVR------AAGFD-------------- 351 (696)
T ss_dssp --------CHHHHHHHHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH------TTCCC--------------
T ss_pred --------hhhHHHHHHHHHHHH-HHHHhHHHhccchhhHHHHHHHHHHHHHHHh------hcccc--------------
Confidence 122222211110000 00000000 00011112222222211100 00000
Q ss_pred ccceeeccCcCCccccccccCCCCccchhhhhhh------hhcccccccccCcceehhhHHHhhhc--cCCCceeEEecC
Q 001337 914 DYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDL------LHEHTYKELDYSGKMVLLLDILTMCS--NMGDKSLVFSQS 985 (1097)
Q Consensus 914 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l------l~~~~~~~~~~S~Kl~~L~eiL~~~~--~~geKVLIFSq~ 985 (1097)
. ....+...+ +..........+.|+..|.++|.... ..+.++|||+++
T Consensus 352 -----------------------~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~ 407 (696)
T 2ykg_A 352 -----------------------E-IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKT 407 (696)
T ss_dssp -----------------------H-HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSC
T ss_pred -----------------------h-HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCc
Confidence 0 000000000 00000001124679999999998763 356899999999
Q ss_pred CCchhHHHHHHhcCCCCCCCCcccccCCceeecc--------CCccchHHHHHHHhhcccccceeeEEEeeeccccccce
Q 001337 986 IPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLD--------GRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGIN 1057 (1097)
Q Consensus 986 ~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~rid--------Gsts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg~GLN 1057 (1097)
..+++.|..+|...+. ..++.+..++ |+++..+|.+++++|+++ +.++ +|++|.++++|||
T Consensus 408 ~~~~~~l~~~L~~~~~--------~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~--g~~~-vLVaT~v~~~GiD 476 (696)
T 2ykg_A 408 RALVDALKNWIEGNPK--------LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS--GDHN-ILIATSVADEGID 476 (696)
T ss_dssp HHHHHHHHHHHHHCTT--------CCSCCEEC-------------------------------CCS-CSEEEESSCCC--
T ss_pred HHHHHHHHHHHHhCCC--------ccccceeEEEccCCCccccCCCHHHHHHHHHHHHhc--CCcc-EEEEechhhcCCc
Confidence 9999999999986320 1226777774 599999999999999961 3344 3899999999999
Q ss_pred ecccceEEEEcCCcCCcccHHHHHHHhhhcc
Q 001337 1058 LHSANRVIIVDGSWNPTYDLQAIYRAWRCMD 1088 (1097)
Q Consensus 1058 L~~An~VIi~D~~WNP~~~~QAiGRa~RiGQ 1088 (1097)
+++++.||+||++||+....|++|| +|.+.
T Consensus 477 ip~v~~VI~~d~p~s~~~~~Qr~GR-GR~~~ 506 (696)
T 2ykg_A 477 IAQCNLVILYEYVGNVIKMIQTRGR-GRARG 506 (696)
T ss_dssp -CCCSEEEEESCC--CCCC----------CC
T ss_pred CccCCEEEEeCCCCCHHHHHHhhcc-CcCCC
Confidence 9999999999999999999999999 88733
No 19
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.95 E-value=6e-28 Score=296.27 Aligned_cols=365 Identities=15% Similarity=0.144 Sum_probs=207.0
Q ss_pred cccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhcc-----ccceeeEeecc-hh
Q 001337 563 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVN-----LGLRTALIVTP-VN 636 (1097)
Q Consensus 563 ~~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~-----~~~k~~LIV~P-~s 636 (1097)
...|+|||.+++.++++.+. ....++||+++||+|||++++.++..++.... ...+++||||| ..
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~---------~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~ 246 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVL---------QGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNV 246 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHH---------TTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC---
T ss_pred CCCchHHHHHHHHHHHHHHh---------cCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHH
Confidence 35799999999999987653 23356899999999999999998888776541 13469999999 66
Q ss_pred hhhhhH-HhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccC
Q 001337 637 VLHNWK-QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 715 (1097)
Q Consensus 637 Lv~qW~-~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~ 715 (1097)
|+.||. ++|..|.+. +..+.+. ......+|+|+||+.+......... ...+....
T Consensus 247 L~~Q~~~~~~~~~~~~------~~~~~~~----------~~~~~~~I~v~T~~~l~~~~~~~~~--------~~~~~~~~ 302 (590)
T 3h1t_A 247 LVDDPKDKTFTPFGDA------RHKIEGG----------KVVKSREIYFAIYQSIASDERRPGL--------YKEFPQDF 302 (590)
T ss_dssp --------CCTTTCSS------EEECCC------------CCSSCSEEEEEGGGC------CCG--------GGGSCTTS
T ss_pred HHHHHHHHHHHhcchh------hhhhhcc----------CCCCCCcEEEEEhhhhccccccccc--------cccCCCCc
Confidence 889999 888887643 2222211 1124568999999998653211000 01112237
Q ss_pred CCEEEecccchhcccc-hhHHHHHhhhccceeeeeccCccccchhhhhhhhhhhhhccCCCchhhhhhccCCCCCCcccC
Q 001337 716 PDILVCDEAHMIKNTR-ADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTN 794 (1097)
Q Consensus 716 ~dlVIiDEAH~iKN~~-S~~~kal~~l~a~~RllLTGTPiqNnl~El~~Ll~fL~p~~lgs~~~F~~~f~~pi~~g~~~~ 794 (1097)
|++||+||||++.+.. +.....+..+...++++|||||..+...+++.++. .++....
T Consensus 303 ~~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~------------------~~~~~~~--- 361 (590)
T 3h1t_A 303 FDLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFG------------------NPIYTYS--- 361 (590)
T ss_dssp CSEEEESCCC---------CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSC------------------SCSEEEC---
T ss_pred cCEEEEECCccccccchHHHHHHHHhCCcceEEEeccccccccchhHHHHcC------------------CceEecC---
Confidence 9999999999998753 34455566667789999999999876655443331 1111000
Q ss_pred CcccchhhcccchhHHHHHHhhHHhhhchhhhccCCCCceEEEEEEecChHHHHHHHHhhhhcCCcccccchHHHHHhhh
Q 001337 795 STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFF 874 (1097)
Q Consensus 795 s~~~d~~~~~~r~~~L~~~L~~fvlRr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~il~~~~~~~~~~~~~~~~~~~l 874 (1097)
+.+.+.. ..+++.....+....................
T Consensus 362 ---------------~~~~i~~-----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 399 (590)
T 3h1t_A 362 ---------------LRQGIDD-----------GFLAPYRVHRVISEVDAAGWRPSKGDVDRFG---------------- 399 (590)
T ss_dssp ---------------HHHHHHH-----------TSSCCEEEEEEEETTCC------------------------------
T ss_pred ---------------HHHHhhC-----------CccCCcEEEEeeeeeeccccccccccccccc----------------
Confidence 1111110 1244444433333322111110000000000
Q ss_pred hhHHHHHHHhcCcceeeecccCCCCCccccccCCCCCCCccceeeccCcCCccccccccCCCCccchhhhhhhhhccccc
Q 001337 875 AGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYK 954 (1097)
Q Consensus 875 ~~l~~Lrqi~~hP~Ll~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~ 954 (1097)
..+ .... +..... ...
T Consensus 400 -------------~~~---~~~~----------------------------------------~~~~~~-~~~------- 415 (590)
T 3h1t_A 400 -------------REI---PDGE----------------------------------------YQTKDF-ERV------- 415 (590)
T ss_dssp -----------------------------------------------------------------CCSH-HHH-------
T ss_pred -------------ccc---cccc----------------------------------------CCHHHh-hhH-------
Confidence 000 0000 000000 000
Q ss_pred ccccCcceehhhHH----HhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHH
Q 001337 955 ELDYSGKMVLLLDI----LTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKL 1030 (1097)
Q Consensus 955 ~~~~S~Kl~~L~ei----L~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~ 1030 (1097)
+....+...+.+. +... ..+.|+|||+++..+++.|...|........ ...+..+..++|.++ ++|+++
T Consensus 416 -~~~~~r~~~i~~~l~~~l~~~-~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~----~~~~~~~~~i~g~~~-~~r~~~ 488 (590)
T 3h1t_A 416 -IALKARTDAFAKHLTDFMKRT-DRFAKTIVFCVDQEHADEMRRALNNLNSDLS----RKHPDYVARVTSEEG-KIGKGH 488 (590)
T ss_dssp -HHHHHTHHHHHHHHHHHHHHH-CTTSEEEEEESSHHHHHHHHHHHHHHTHHHH----TTCTTSEEECSSTTH-HHHHHH
T ss_pred -hcChHHHHHHHHHHHHHHHhc-CCCccEEEEECCHHHHHHHHHHHHHhhhhhh----ccCCCeEEEEeCCCh-HHHHHH
Confidence 0011233333333 3332 3468999999999999999999986321000 001223678999987 369999
Q ss_pred HHhhcccccceeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhcc---ccccccc
Q 001337 1031 VERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMD---KQSQFLL 1095 (1097)
Q Consensus 1031 i~~Fn~~~n~~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQ---kK~V~VY 1095 (1097)
+++|++++ ....++|++|+++++|||++.++.||+++++|++....|++||++|.|+ +..++||
T Consensus 489 l~~F~~~~-~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~ 555 (590)
T 3h1t_A 489 LSRFQELE-TSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNII 555 (590)
T ss_dssp HHHHHCTT-CCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEE
T ss_pred HHHHhCCC-CCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEE
Confidence 99999853 2356789999999999999999999999999999999999999999996 3445554
No 20
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.94 E-value=8.6e-27 Score=269.79 Aligned_cols=318 Identities=14% Similarity=0.124 Sum_probs=211.3
Q ss_pred cccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch-hhhhhhHH
Q 001337 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 643 (1097)
Q Consensus 565 ~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~-sLv~qW~~ 643 (1097)
.|+|||.+++.+++ .+..+|++.+||+|||++++..+...+... .+..++|||||. .|+.||.+
T Consensus 30 ~~~~~Q~~~i~~~~--------------~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-~~~~~~lil~P~~~L~~q~~~ 94 (391)
T 1xti_A 30 HPSEVQHECIPQAI--------------LGMDVLCQAKSGMGKTAVFVLATLQQLEPV-TGQVSVLVMCHTRELAFQISK 94 (391)
T ss_dssp SCCHHHHHHHHHHT--------------TTCCEEEECSSCSSHHHHHHHHHHHHCCCC-TTCCCEEEECSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--------------cCCcEEEECCCCCcHHHHHHHHHHHhhccc-CCCeeEEEECCCHHHHHHHHH
Confidence 48999999998773 356799999999999988776665544322 123589999996 68999999
Q ss_pred hhcccccCCCcccEEEeecccchhH-HHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEec
Q 001337 644 EFMKWRPSELKPLRVFMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 722 (1097)
Q Consensus 644 Ei~k~~p~~~~~l~V~~~~~~~~~~-r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiD 722 (1097)
++.++.... ..+.+..+.+..... ....+. ....+|+|+|++.+..+..... +....+++||+|
T Consensus 95 ~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~--~~~~~iiv~T~~~l~~~~~~~~------------~~~~~~~~vViD 159 (391)
T 1xti_A 95 EYERFSKYM-PNVKVAVFFGGLSIKKDEEVLK--KNCPHIVVGTPGRILALARNKS------------LNLKHIKHFILD 159 (391)
T ss_dssp HHHHHTTTC-TTCCEEEECTTSCHHHHHHHHH--HSCCSEEEECHHHHHHHHHTTS------------SCCTTCSEEEEC
T ss_pred HHHHHHhhC-CCeEEEEEeCCCCHHHHHHHHh--cCCCCEEEECHHHHHHHHHcCC------------ccccccCEEEEe
Confidence 999886431 135666665543322 222111 1336899999998764321110 112378999999
Q ss_pred ccchhcccchh---HHHHHhhh-ccceeeeeccCccccchhhhhhhhhhhhhccCCCchhhhhhccCCCCCCcccCCccc
Q 001337 723 EAHMIKNTRAD---TTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSE 798 (1097)
Q Consensus 723 EAH~iKN~~S~---~~kal~~l-~a~~RllLTGTPiqNnl~El~~Ll~fL~p~~lgs~~~F~~~f~~pi~~g~~~~s~~~ 798 (1097)
|||++.+.... ....+..+ ...++++|||||-..- .+ ++. ..+..|.....
T Consensus 160 EaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~-~~---~~~--------------~~~~~~~~~~~------- 214 (391)
T 1xti_A 160 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEI-RP---VCR--------------KFMQDPMEIFV------- 214 (391)
T ss_dssp SHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTH-HH---HHH--------------HHCSSCEEEEC-------
T ss_pred CHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHH-HH---HHH--------------HHcCCCeEEEe-------
Confidence 99999764221 11222222 3567899999984321 00 000 00000000000
Q ss_pred chhhcccchhHHHHHHhhHHhhhchhhhccCCCCceEEEEEEecChHHHHHHHHhhhhcCCcccccchHHHHHhhhhhHH
Q 001337 799 DVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ 878 (1097)
Q Consensus 799 d~~~~~~r~~~L~~~L~~fvlRr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~il~~~~~~~~~~~~~~~~~~~l~~l~ 878 (1097)
. ......++....+.
T Consensus 215 -----------------------~-~~~~~~~~~~~~~~----------------------------------------- 229 (391)
T 1xti_A 215 -----------------------D-DETKLTLHGLQQYY----------------------------------------- 229 (391)
T ss_dssp -----------------------C-CCCCCCCTTCEEEE-----------------------------------------
T ss_pred -----------------------c-CccccCcccceEEE-----------------------------------------
Confidence 0 00000000000000
Q ss_pred HHHHHhcCcceeeecccCCCCCccccccCCCCCCCccceeeccCcCCccccccccCCCCccchhhhhhhhhccccccccc
Q 001337 879 ALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDY 958 (1097)
Q Consensus 879 ~Lrqi~~hP~Ll~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 958 (1097)
.....
T Consensus 230 ---------------------------------------------------------------------------~~~~~ 234 (391)
T 1xti_A 230 ---------------------------------------------------------------------------VKLKD 234 (391)
T ss_dssp ---------------------------------------------------------------------------EECCG
T ss_pred ---------------------------------------------------------------------------EEcCc
Confidence 00011
Q ss_pred CcceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccc
Q 001337 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1038 (1097)
Q Consensus 959 S~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~ 1038 (1097)
..|...|.+++... .+.++|||+++...+..+...|.. .|+.+..++|+++..+|.++++.|+++
T Consensus 235 ~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~------------~~~~~~~~~~~~~~~~r~~~~~~f~~~- 299 (391)
T 1xti_A 235 NEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVE------------QNFPAIAIHRGMPQEERLSRYQQFKDF- 299 (391)
T ss_dssp GGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHH------------TTCCEEEECTTSCHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHh------------CCCcEEEEeCCCCHHHHHHHHHHHhcC-
Confidence 23555666666654 468999999999999999999985 578899999999999999999999873
Q ss_pred cceeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhccccccccc
Q 001337 1039 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1039 n~~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
..+ +|++|.++++|+|++++++||+++++|++....|++||++|.|+...+++|
T Consensus 300 --~~~-vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 353 (391)
T 1xti_A 300 --QRR-ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 353 (391)
T ss_dssp --CCS-EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEE
T ss_pred --CCc-EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEE
Confidence 333 588999999999999999999999999999999999999999998887766
No 21
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.93 E-value=1.3e-26 Score=265.26 Aligned_cols=310 Identities=17% Similarity=0.160 Sum_probs=210.7
Q ss_pred cccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch-hhhhhhHH
Q 001337 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 643 (1097)
Q Consensus 565 ~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~-sLv~qW~~ 643 (1097)
.|+|||.+++.++++ .+..++++.+||+|||++++..+...+... ...++|||+|. .|+.||.+
T Consensus 28 ~~~~~Q~~~i~~~~~-------------~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~ 92 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLN-------------DEYNIVAQARTGSGKTASFAIPLIELVNEN--NGIEAIILTPTRELAIQVAD 92 (367)
T ss_dssp SCCHHHHHHHHHHHH-------------TCSEEEEECCSSSSHHHHHHHHHHHHSCSS--SSCCEEEECSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC-------------CCCCEEEECCCCChHHHHHHHHHHHHhccc--CCCcEEEEcCCHHHHHHHHH
Confidence 689999999987753 235789999999999998877766654332 23589999996 58899999
Q ss_pred hhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEecc
Q 001337 644 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 723 (1097)
Q Consensus 644 Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiDE 723 (1097)
++.++.+. ..+.+....+...... ....+ ...+|+|+||+.+....... ......+++||+||
T Consensus 93 ~~~~~~~~--~~~~v~~~~~~~~~~~--~~~~~-~~~~iiv~T~~~l~~~~~~~------------~~~~~~~~~iIiDE 155 (367)
T 1hv8_A 93 EIESLKGN--KNLKIAKIYGGKAIYP--QIKAL-KNANIVVGTPGRILDHINRG------------TLNLKNVKYFILDE 155 (367)
T ss_dssp HHHHHHCS--SCCCEEEECTTSCHHH--HHHHH-HTCSEEEECHHHHHHHHHTT------------CSCTTSCCEEEEET
T ss_pred HHHHHhCC--CCceEEEEECCcchHH--HHhhc-CCCCEEEecHHHHHHHHHcC------------CcccccCCEEEEeC
Confidence 99998764 2345555554332211 11222 36799999999875422110 01123789999999
Q ss_pred cchhcccc--hhHHHHHhhh-ccceeeeeccCccccchhhhhhhhhhhhhccCCCchhhhhhccCCCCCCcccCCcccch
Q 001337 724 AHMIKNTR--ADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDV 800 (1097)
Q Consensus 724 AH~iKN~~--S~~~kal~~l-~a~~RllLTGTPiqNnl~El~~Ll~fL~p~~lgs~~~F~~~f~~pi~~g~~~~s~~~d~ 800 (1097)
||.+.+.. ......+..+ ...+.++|||||..+... ++. ..+..+
T Consensus 156 ah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~-------~~~-----------~~~~~~-------------- 203 (367)
T 1hv8_A 156 ADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILN-------LAK-----------KYMGDY-------------- 203 (367)
T ss_dssp HHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHH-------HHH-----------HHCCSE--------------
T ss_pred chHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHH-------HHH-----------HHcCCC--------------
Confidence 99997654 2223333333 456779999999432110 000 000000
Q ss_pred hhcccchhHHHHHHhhHHhhhchhhhccCCCCceEEEEEEecChHHHHHHHHhhhhcCCcccccchHHHHHhhhhhHHHH
Q 001337 801 KIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQAL 880 (1097)
Q Consensus 801 ~~~~~r~~~L~~~L~~fvlRr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~il~~~~~~~~~~~~~~~~~~~l~~l~~L 880 (1097)
..+....+..... .+
T Consensus 204 -----------------------~~~~~~~~~~~~~-~~----------------------------------------- 218 (367)
T 1hv8_A 204 -----------------------SFIKAKINANIEQ-SY----------------------------------------- 218 (367)
T ss_dssp -----------------------EEEECCSSSSSEE-EE-----------------------------------------
T ss_pred -----------------------eEEEecCCCCceE-EE-----------------------------------------
Confidence 0000000000000 00
Q ss_pred HHHhcCcceeeecccCCCCCccccccCCCCCCCccceeeccCcCCccccccccCCCCccchhhhhhhhhcccccccccCc
Q 001337 881 AQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSG 960 (1097)
Q Consensus 881 rqi~~hP~Ll~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S~ 960 (1097)
.......
T Consensus 219 -------------------------------------------------------------------------~~~~~~~ 225 (367)
T 1hv8_A 219 -------------------------------------------------------------------------VEVNENE 225 (367)
T ss_dssp -------------------------------------------------------------------------EECCGGG
T ss_pred -------------------------------------------------------------------------EEeChHH
Confidence 0001123
Q ss_pred ceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccc
Q 001337 961 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 1040 (1097)
Q Consensus 961 Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~ 1040 (1097)
|+..|.+++. ..+.++|||+++...++.+...|.. .|+.+..++|+++..+|.++++.|+++
T Consensus 226 ~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~------------~~~~~~~~~~~~~~~~r~~~~~~f~~~--- 287 (367)
T 1hv8_A 226 RFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRD------------IGFKAGAIHGDLSQSQREKVIRLFKQK--- 287 (367)
T ss_dssp HHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHH------------TTCCEEEECSSSCHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHh------------cCCCeEEeeCCCCHHHHHHHHHHHHcC---
Confidence 4445555554 4578999999999999999999986 478899999999999999999999973
Q ss_pred eeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhccccccccc
Q 001337 1041 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1041 ~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
..+ +|++|.++++|+|++.+++||+++++|++....|++||++|.|+...+++|
T Consensus 288 ~~~-vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 341 (367)
T 1hv8_A 288 KIR-ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISI 341 (367)
T ss_dssp SSS-EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEE
T ss_pred CCe-EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEE
Confidence 333 588999999999999999999999999999999999999999998887765
No 22
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.92 E-value=1.2e-25 Score=262.42 Aligned_cols=317 Identities=16% Similarity=0.142 Sum_probs=211.0
Q ss_pred cccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch-hhhhhhHH
Q 001337 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 643 (1097)
Q Consensus 565 ~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~-sLv~qW~~ 643 (1097)
.++|||.+++.+++ .+..+|++.+||+|||++++..+...+... ....++|||+|. .|+.||.+
T Consensus 59 ~~~~~Q~~ai~~i~--------------~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-~~~~~~lil~Pt~~L~~q~~~ 123 (410)
T 2j0s_A 59 KPSAIQQRAIKQII--------------KGRDVIAQSQSGTGKTATFSISVLQCLDIQ-VRETQALILAPTRELAVQIQK 123 (410)
T ss_dssp SCCHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHHTCCTT-SCSCCEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--------------CCCCEEEECCCCCCchHHHHHHHHHHHhhc-cCCceEEEEcCcHHHHHHHHH
Confidence 48999999998874 246789999999999988777666554322 123689999996 58899999
Q ss_pred hhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEecc
Q 001337 644 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 723 (1097)
Q Consensus 644 Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiDE 723 (1097)
++.++... ..+.+....+..... ..........+|+++|++.+....... .+....+++||+||
T Consensus 124 ~~~~~~~~--~~~~~~~~~g~~~~~--~~~~~~~~~~~ivv~Tp~~l~~~l~~~------------~~~~~~~~~vViDE 187 (410)
T 2j0s_A 124 GLLALGDY--MNVQCHACIGGTNVG--EDIRKLDYGQHVVAGTPGRVFDMIRRR------------SLRTRAIKMLVLDE 187 (410)
T ss_dssp HHHHHTTT--TTCCEEEECTTSCHH--HHHHHHHHCCSEEEECHHHHHHHHHTT------------SSCCTTCCEEEEET
T ss_pred HHHHHhcc--CCeEEEEEECCCCHH--HHHHHhhcCCCEEEcCHHHHHHHHHhC------------CccHhheeEEEEcc
Confidence 99988754 234555544433221 122233456789999998765321110 01123689999999
Q ss_pred cchhcccc--hhHHHHHhhh-ccceeeeeccCccccchhhhhhhhhhhhhccCCCchhhhhhccCCCCCCcccCCcccch
Q 001337 724 AHMIKNTR--ADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDV 800 (1097)
Q Consensus 724 AH~iKN~~--S~~~kal~~l-~a~~RllLTGTPiqNnl~El~~Ll~fL~p~~lgs~~~F~~~f~~pi~~g~~~~s~~~d~ 800 (1097)
||++.+.. ......+..+ ...+.++|||||-.+ +..++. ..+..|.....
T Consensus 188 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~----~~~~~~--------------~~~~~~~~~~~--------- 240 (410)
T 2j0s_A 188 ADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHE----ILEMTN--------------KFMTDPIRILV--------- 240 (410)
T ss_dssp HHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHH----HHTTGG--------------GTCSSCEEECC---------
T ss_pred HHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHH----HHHHHH--------------HHcCCCEEEEe---------
Confidence 99987654 2233333333 456789999998431 111100 00001100000
Q ss_pred hhcccchhHHHHHHhhHHhhhchhhhccCCCCceEEEEEEecChHHHHHHHHhhhhcCCcccccchHHHHHhhhhhHHHH
Q 001337 801 KIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQAL 880 (1097)
Q Consensus 801 ~~~~~r~~~L~~~L~~fvlRr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~il~~~~~~~~~~~~~~~~~~~l~~l~~L 880 (1097)
.... ..++......+.+.
T Consensus 241 ---------------------~~~~--~~~~~~~~~~~~~~--------------------------------------- 258 (410)
T 2j0s_A 241 ---------------------KRDE--LTLEGIKQFFVAVE--------------------------------------- 258 (410)
T ss_dssp ---------------------CGGG--CSCTTEEEEEEEES---------------------------------------
T ss_pred ---------------------cCcc--ccCCCceEEEEEeC---------------------------------------
Confidence 0000 00000000000000
Q ss_pred HHHhcCcceeeecccCCCCCccccccCCCCCCCccceeeccCcCCccccccccCCCCccchhhhhhhhhcccccccccCc
Q 001337 881 AQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSG 960 (1097)
Q Consensus 881 rqi~~hP~Ll~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S~ 960 (1097)
....
T Consensus 259 ----------------------------------------------------------------------------~~~~ 262 (410)
T 2j0s_A 259 ----------------------------------------------------------------------------REEW 262 (410)
T ss_dssp ----------------------------------------------------------------------------STTH
T ss_pred ----------------------------------------------------------------------------cHHh
Confidence 0012
Q ss_pred ceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccc
Q 001337 961 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 1040 (1097)
Q Consensus 961 Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~ 1040 (1097)
|+..|.+++.... ..++|||+++...++.+...|.. .|+.+..++|+++..+|..+++.|+++
T Consensus 263 k~~~l~~~~~~~~--~~~~lVf~~~~~~~~~l~~~L~~------------~~~~~~~~h~~~~~~~r~~~~~~f~~g--- 325 (410)
T 2j0s_A 263 KFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMRE------------ANFTVSSMHGDMPQKERESIMKEFRSG--- 325 (410)
T ss_dssp HHHHHHHHHHHHT--SSEEEEECSSHHHHHHHHHHHHH------------TTCCCEEECTTSCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHhcC--CCcEEEEEcCHHHHHHHHHHHHh------------CCCceEEeeCCCCHHHHHHHHHHHHCC---
Confidence 4445566665543 46999999999999999999985 578899999999999999999999973
Q ss_pred eeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhccccccccc
Q 001337 1041 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1041 ~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
..+ +|++|.++++|||++.+++||++|++|++....|++||++|.|++-.+++|
T Consensus 326 ~~~-vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 379 (410)
T 2j0s_A 326 ASR-VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINF 379 (410)
T ss_dssp SSC-EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred CCC-EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEE
Confidence 333 588999999999999999999999999999999999999999998877665
No 23
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.92 E-value=8.8e-26 Score=262.53 Aligned_cols=311 Identities=17% Similarity=0.174 Sum_probs=209.1
Q ss_pred cccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch-hhhhhhHH
Q 001337 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 643 (1097)
Q Consensus 565 ~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~-sLv~qW~~ 643 (1097)
.|+|||.+++.+++. +..+++..+||+|||++++..+...+.... ...++|||+|. .|+.||.+
T Consensus 43 ~~~~~Q~~~i~~i~~--------------~~~~li~a~TGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~ 107 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT--------------GRDILARAKNGTGKTAAFVIPTLEKVKPKL-NKIQALIMVPTRELALQTSQ 107 (400)
T ss_dssp SCCHHHHHHHHHHHH--------------TCCEEEECCTTSCHHHHHHHHHHHHCCTTS-CSCCEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc--------------CCCEEEECCCCcHHHHHHHHHHHHHHhhcc-CCccEEEEcCCHHHHHHHHH
Confidence 589999999988753 356899999999999887766655543321 23479999996 68889999
Q ss_pred hhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEecc
Q 001337 644 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 723 (1097)
Q Consensus 644 Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiDE 723 (1097)
++.++.+.. .+.+..+.+...... .........+|+|+|++.+........ .....+++||+||
T Consensus 108 ~~~~~~~~~--~~~~~~~~g~~~~~~--~~~~~~~~~~Ivv~T~~~l~~~~~~~~------------~~~~~~~~vIiDE 171 (400)
T 1s2m_A 108 VVRTLGKHC--GISCMVTTGGTNLRD--DILRLNETVHILVGTPGRVLDLASRKV------------ADLSDCSLFIMDE 171 (400)
T ss_dssp HHHHHTTTT--TCCEEEECSSSCHHH--HHHHTTSCCSEEEECHHHHHHHHHTTC------------SCCTTCCEEEEES
T ss_pred HHHHHhccc--CceEEEEeCCcchHH--HHHHhcCCCCEEEEchHHHHHHHHhCC------------cccccCCEEEEeC
Confidence 999987642 245555554433221 122233567899999988753211100 1123689999999
Q ss_pred cchhcccchhHHHHHhhh-----ccceeeeeccCccccchhhhhhhhhhhhhccCCCchhhhhhccCCCCCCcccCCccc
Q 001337 724 AHMIKNTRADTTQALKQV-----KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSE 798 (1097)
Q Consensus 724 AH~iKN~~S~~~kal~~l-----~a~~RllLTGTPiqNnl~El~~Ll~fL~p~~lgs~~~F~~~f~~pi~~g~~~~s~~~ 798 (1097)
||++.+.. ....+..+ ...+.++||||+-.. +. .++. ..+..|...
T Consensus 172 aH~~~~~~--~~~~~~~i~~~~~~~~~~i~lSAT~~~~-~~------~~~~-----------~~~~~~~~~--------- 222 (400)
T 1s2m_A 172 ADKMLSRD--FKTIIEQILSFLPPTHQSLLFSATFPLT-VK------EFMV-----------KHLHKPYEI--------- 222 (400)
T ss_dssp HHHHSSHH--HHHHHHHHHTTSCSSCEEEEEESCCCHH-HH------HHHH-----------HHCSSCEEE---------
T ss_pred chHhhhhc--hHHHHHHHHHhCCcCceEEEEEecCCHH-HH------HHHH-----------HHcCCCeEE---------
Confidence 99886543 22223322 356789999996321 00 0000 000000000
Q ss_pred chhhcccchhHHHHHHhhHHhhhchhhhccC--CCCceEEEEEEecChHHHHHHHHhhhhcCCcccccchHHHHHhhhhh
Q 001337 799 DVKIMNQRSHILYEQLKGFVQRMDMNVVKKD--LPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAG 876 (1097)
Q Consensus 799 d~~~~~~r~~~L~~~L~~fvlRr~~~~v~~~--LP~k~e~vv~v~Ls~~Q~~lY~~il~~~~~~~~~~~~~~~~~~~l~~ 876 (1097)
.+... .+....+..
T Consensus 223 --------------------------~~~~~~~~~~~~~~~~-------------------------------------- 238 (400)
T 1s2m_A 223 --------------------------NLMEELTLKGITQYYA-------------------------------------- 238 (400)
T ss_dssp --------------------------SCCSSCBCTTEEEEEE--------------------------------------
T ss_pred --------------------------EeccccccCCceeEEE--------------------------------------
Confidence 00000 000000000
Q ss_pred HHHHHHHhcCcceeeecccCCCCCccccccCCCCCCCccceeeccCcCCccccccccCCCCccchhhhhhhhhccccccc
Q 001337 877 YQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKEL 956 (1097)
Q Consensus 877 l~~Lrqi~~hP~Ll~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 956 (1097)
..
T Consensus 239 ------------------------------------------------------------------------------~~ 240 (400)
T 1s2m_A 239 ------------------------------------------------------------------------------FV 240 (400)
T ss_dssp ------------------------------------------------------------------------------EC
T ss_pred ------------------------------------------------------------------------------Ee
Confidence 00
Q ss_pred ccCcceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcc
Q 001337 957 DYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 1036 (1097)
Q Consensus 957 ~~S~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~ 1036 (1097)
....|+..+..++... .+.++|||+++...++.+...|.. .|+.+..++|+++..+|..+++.|++
T Consensus 241 ~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~------------~~~~~~~~~~~~~~~~r~~~~~~f~~ 306 (400)
T 1s2m_A 241 EERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITD------------LGYSCYYSHARMKQQERNKVFHEFRQ 306 (400)
T ss_dssp CGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHH------------HTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHh------------cCCCeEEecCCCCHHHHHHHHHHHhc
Confidence 1123455566666543 357999999999999999999985 57889999999999999999999987
Q ss_pred cccceeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhccccccccc
Q 001337 1037 PLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1037 ~~n~~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
+ ..+ +|++|.++++|+|+++++.||+++++|++....|++||++|.||...+++|
T Consensus 307 g---~~~-vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l 361 (400)
T 1s2m_A 307 G---KVR-TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINL 361 (400)
T ss_dssp T---SSS-EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEE
T ss_pred C---CCc-EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEE
Confidence 3 333 588999999999999999999999999999999999999999998877765
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.92 E-value=4.4e-26 Score=263.89 Aligned_cols=317 Identities=15% Similarity=0.118 Sum_probs=106.7
Q ss_pred ccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch-hhhhhhH
Q 001337 564 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWK 642 (1097)
Q Consensus 564 ~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~-sLv~qW~ 642 (1097)
..|+|||.+++.+++. +..+++..+||+|||++++..+...+... ...+++|||||. .|+.||.
T Consensus 42 ~~~~~~Q~~~i~~i~~--------------~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-~~~~~~lil~P~~~L~~q~~ 106 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE--------------GHDVLAQAQSGTGKTGTFSIAALQRIDTS-VKAPQALMLAPTRELALQIQ 106 (394)
T ss_dssp CSCCHHHHHHHHHHHH--------------TCCEEECCCSSHHHHHHHHHHHHHHCCTT-CCSCCEEEECSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC--------------CCCEEEECCCCChHHHHHHHHHHHHhhcc-CCCCCEEEEcCCHHHHHHHH
Confidence 3689999999988753 35689999999999988655554443322 123589999996 6889999
Q ss_pred HhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEec
Q 001337 643 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 722 (1097)
Q Consensus 643 ~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiD 722 (1097)
+++.++.+. ..+.+..+.+....... ...+ ...+++|+|++.+....... .+....+++||+|
T Consensus 107 ~~~~~~~~~--~~~~~~~~~g~~~~~~~--~~~~-~~~~i~v~T~~~l~~~~~~~------------~~~~~~~~~vIiD 169 (394)
T 1fuu_A 107 KVVMALAFH--MDIKVHACIGGTSFVED--AEGL-RDAQIVVGTPGRVFDNIQRR------------RFRTDKIKMFILD 169 (394)
T ss_dssp HHHHHHTTT--SCCCEEEECSSCCHHHH--HHHH-HHCSEEEECHHHHHHHHHTT------------SSCCTTCCEEEEE
T ss_pred HHHHHHhcc--CCeeEEEEeCCCchHHH--Hhhc-CCCCEEEECHHHHHHHHHhC------------CcchhhCcEEEEE
Confidence 999998754 23555555554332211 1111 25789999999875321110 1112378999999
Q ss_pred ccchhcccc--hhHHHHHhhh-ccceeeeeccCccccchhhhhhhhhhhhhccCCCchhhhhhccCCCCCCcccCCcccc
Q 001337 723 EAHMIKNTR--ADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSED 799 (1097)
Q Consensus 723 EAH~iKN~~--S~~~kal~~l-~a~~RllLTGTPiqNnl~El~~Ll~fL~p~~lgs~~~F~~~f~~pi~~g~~~~s~~~d 799 (1097)
|||++.... ....+.+..+ ...++++|||||-.. ..++ + ...+..|.
T Consensus 170 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~-~~~~---~--------------~~~~~~~~------------ 219 (394)
T 1fuu_A 170 EADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPND-VLEV---T--------------TKFMRNPV------------ 219 (394)
T ss_dssp THHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHH-HHHH---H--------------HHHCCSCE------------
T ss_pred ChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHH-HHHH---H--------------HHhcCCCe------------
Confidence 999985433 2333334444 456789999998421 0000 0 00000000
Q ss_pred hhhcccchhHHHHHHhhHHhhhchhhhccCCCCceEEEEEEecChHHHHHHHHhhhhcCCcccccchHHHHHhhhhhHHH
Q 001337 800 VKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQA 879 (1097)
Q Consensus 800 ~~~~~~r~~~L~~~L~~fvlRr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~il~~~~~~~~~~~~~~~~~~~l~~l~~ 879 (1097)
.+.+ ...... ...+
T Consensus 220 -------------------------------------~~~~--~~~~~~-~~~~-------------------------- 233 (394)
T 1fuu_A 220 -------------------------------------RILV--KKDELT-LEGI-------------------------- 233 (394)
T ss_dssp -------------------------------------EEEE--CC-----------------------------------
T ss_pred -------------------------------------EEEe--cCcccc-CCCc--------------------------
Confidence 0000 000000 0000
Q ss_pred HHHHhcCcceeeecccCCCCCccccccCCCCCCCccceeeccCcCCccccccccCCCCccchhhhhhhhhcccccccccC
Q 001337 880 LAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYS 959 (1097)
Q Consensus 880 Lrqi~~hP~Ll~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S 959 (1097)
.+.... .....
T Consensus 234 -~~~~~~--------------------------------------------------------------------~~~~~ 244 (394)
T 1fuu_A 234 -KQFYVN--------------------------------------------------------------------VEEEE 244 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -eEEEEE--------------------------------------------------------------------cCchh
Confidence 000000 00001
Q ss_pred cceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhccccc
Q 001337 960 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1039 (1097)
Q Consensus 960 ~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n 1039 (1097)
.|...+.+++... .+.++|||+++...++.+...|.. .|+.+..++|+++..+|.++++.|++
T Consensus 245 ~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~------------~~~~~~~~~~~~~~~~r~~~~~~f~~--- 307 (394)
T 1fuu_A 245 YKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRN------------DKFTVSAIYSDLPQQERDTIMKEFRS--- 307 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHH------------cCCeEEEeeCCCCHHHHHHHHHHHHC---
Confidence 2444455555433 357999999999999999999985 57889999999999999999999987
Q ss_pred ceeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhccccccccc
Q 001337 1040 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1040 ~~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
+..+ +|++|.++++|+|++++++||+++++|++....|++||++|.|+...+++|
T Consensus 308 ~~~~-vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 362 (394)
T 1fuu_A 308 GSSR-ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINF 362 (394)
T ss_dssp --------------------------------------------------------
T ss_pred CCCc-EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEE
Confidence 3333 588999999999999999999999999999999999999999998887765
No 25
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.92 E-value=6.6e-26 Score=264.40 Aligned_cols=317 Identities=16% Similarity=0.140 Sum_probs=197.3
Q ss_pred cccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch-hhhhhhHH
Q 001337 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 643 (1097)
Q Consensus 565 ~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~-sLv~qW~~ 643 (1097)
.++|||.+++..++ .+..+|+..+||.|||++++..+...+.... ..+++|||+|. .|+.||.+
T Consensus 62 ~~~~~Q~~~i~~~~--------------~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~ 126 (414)
T 3eiq_A 62 KPSAIQQRAILPCI--------------KGYDVIAQAQSGTGKTATFAISILQQIELDL-KATQALVLAPTRELAQQIQK 126 (414)
T ss_dssp SCCHHHHHHHHHHH--------------TTCCEEECCCSCSSSHHHHHHHHHHHCCTTS-CSCCEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHhHHHh--------------CCCCEEEECCCCCcccHHHHHHHHHHHhhcC-CceeEEEEeChHHHHHHHHH
Confidence 58999999987764 2456899999999999987766665543321 23579999996 58899999
Q ss_pred hhcccccCCCcccEEEeecccchhHHHHHHHHHH-hcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEec
Q 001337 644 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWR-AKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 722 (1097)
Q Consensus 644 Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~-~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiD 722 (1097)
++.++... ..+.+....+..... ....... ...+|+|+|++.+...... ..+....+++||+|
T Consensus 127 ~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~iiv~T~~~l~~~l~~------------~~~~~~~~~~vViD 190 (414)
T 3eiq_A 127 VVMALGDY--MGASCHACIGGTNVR--AEVQKLQMEAPHIIVGTPGRVFDMLNR------------RYLSPKYIKMFVLD 190 (414)
T ss_dssp HHHHHGGG--SCCCEEECCCCTTHH--HHHHHHTTTCCSEEEECHHHHHHHHHH------------TSSCSTTCCEEEEC
T ss_pred HHHHHhcc--cCceEEEEECCcchH--HHHHHHhcCCCCEEEECHHHHHHHHHc------------CCcccccCcEEEEE
Confidence 99988643 224444443332211 1112222 4568999999886432110 01112368999999
Q ss_pred ccchhcccc--hhHHHHHhhh-ccceeeeeccCccccchhhhhhhhhhhhhccCCCchhhhhhccCCCCCCcccCCcccc
Q 001337 723 EAHMIKNTR--ADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSED 799 (1097)
Q Consensus 723 EAH~iKN~~--S~~~kal~~l-~a~~RllLTGTPiqNnl~El~~Ll~fL~p~~lgs~~~F~~~f~~pi~~g~~~~s~~~d 799 (1097)
|||++.+.. ..+...+..+ ...+.++|||||-.+... ++. ..+..|..
T Consensus 191 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~----~~~--------------~~~~~~~~----------- 241 (414)
T 3eiq_A 191 EADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLE----VTK--------------KFMRDPIR----------- 241 (414)
T ss_dssp SHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHH----HHT--------------TTCSSCEE-----------
T ss_pred CHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHH----HHH--------------HHcCCCEE-----------
Confidence 999986543 3344444555 456779999998321100 000 00000000
Q ss_pred hhhcccchhHHHHHHhhHHhhhchhhhccCCCCceEEEEEEecChHHHHHHHHhhhhcCCcccccchHHHHHhhhhhHHH
Q 001337 800 VKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQA 879 (1097)
Q Consensus 800 ~~~~~~r~~~L~~~L~~fvlRr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~il~~~~~~~~~~~~~~~~~~~l~~l~~ 879 (1097)
+.... ....
T Consensus 242 ----------------------------------------~~~~~-----------------~~~~-------------- 250 (414)
T 3eiq_A 242 ----------------------------------------ILVKK-----------------EELT-------------- 250 (414)
T ss_dssp ----------------------------------------ECCCC-----------------CCCC--------------
T ss_pred ----------------------------------------EEecC-----------------CccC--------------
Confidence 00000 0000
Q ss_pred HHHHhcCcceeeecccCCCCCccccccCCCCCCCccceeeccCcCCccccccccCCCCccchhhhhhhhhcccccccccC
Q 001337 880 LAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYS 959 (1097)
Q Consensus 880 Lrqi~~hP~Ll~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S 959 (1097)
.+.+.+ +. .......
T Consensus 251 ------~~~~~~-------------------------------------~~----------------------~~~~~~~ 265 (414)
T 3eiq_A 251 ------LEGIRQ-------------------------------------FY----------------------INVEREE 265 (414)
T ss_dssp ------TTSCCE-------------------------------------EE----------------------EECSSST
T ss_pred ------CCCceE-------------------------------------EE----------------------EEeChHH
Confidence 000000 00 0000012
Q ss_pred cceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhccccc
Q 001337 960 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1039 (1097)
Q Consensus 960 ~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n 1039 (1097)
.|+..|.+++... .+.++|||+++...++.+...|.. .|+.+..++|+++..+|.++++.|++
T Consensus 266 ~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~------------~~~~~~~~h~~~~~~~r~~~~~~f~~--- 328 (414)
T 3eiq_A 266 WKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHA------------RDFTVSAMHGDMDQKERDVIMREFRS--- 328 (414)
T ss_dssp THHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHT------------TTCCCEEC---CHHHHHHHHHHHHSC---
T ss_pred hHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHh------------cCCeEEEecCCCCHHHHHHHHHHHHc---
Confidence 3666777777654 357999999999999999999985 57889999999999999999999987
Q ss_pred ceeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhccccccccc
Q 001337 1040 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1040 ~~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
+..+ +|++|.++++|||++.+++||+++++||+....|++||++|.|+...++++
T Consensus 329 g~~~-vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 383 (414)
T 3eiq_A 329 GSSR-VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINM 383 (414)
T ss_dssp C----CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEE
T ss_pred CCCc-EEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEE
Confidence 3343 589999999999999999999999999999999999999999998776654
No 26
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.92 E-value=7.7e-26 Score=251.67 Aligned_cols=199 Identities=15% Similarity=0.111 Sum_probs=140.6
Q ss_pred CCCceEEEEEEecChHHHHHHHHhhhhcCCcc------cccchHHHHHhhhhhHHHHHHHhcCcceeeecccCCCCCccc
Q 001337 830 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFTN------DRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSRED 903 (1097)
Q Consensus 830 LP~k~e~vv~v~Ls~~Q~~lY~~il~~~~~~~------~~~~~~~~~~~~l~~l~~Lrqi~~hP~Ll~~~~~~~~~~~e~ 903 (1097)
-|++.|++++++||+.|+++|+.++....... ..........++...++.||++||||+|+.........
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~~---- 95 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSL---- 95 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCS----
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCccc----
Confidence 49999999999999999999999875321110 11111223346778889999999999997311000000
Q ss_pred cccCCCCCCCccceeeccCcCCccccccccCCCCccchhhhhhhhhcccccccccCcceehhhHHHhhhccCCCceeEEe
Q 001337 904 AEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFS 983 (1097)
Q Consensus 904 ~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S~Kl~~L~eiL~~~~~~geKVLIFS 983 (1097)
. .... ....++.|+|+.+|..+|..+.+.|+||||||
T Consensus 96 --------------------------~-----~~~~------------~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfs 132 (328)
T 3hgt_A 96 --------------------------I-----TRDV------------PAHLAENSGKFSVLRDLINLVQEYETETAIVC 132 (328)
T ss_dssp --------------------------C-----STTH------------HHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEE
T ss_pred --------------------------c-----ccch------------hhHHHHcCccHHHHHHHHHHHHhCCCEEEEEE
Confidence 0 0000 01123579999999999999999999999999
Q ss_pred cCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccceeeEEEeeeccccccce-----e
Q 001337 984 QSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGIN-----L 1058 (1097)
Q Consensus 984 q~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg~GLN-----L 1058 (1097)
|++.++|+|+.+|.. .|+.|.|+||++.. .+++. . +..+.++|+ +.+||.|+| |
T Consensus 133 q~t~~LDilE~~l~~------------~~~~y~RlDG~~~~-~~~k~-~------~~~~~i~Ll-tsag~~gin~~~~nl 191 (328)
T 3hgt_A 133 RPGRTMDLLEALLLG------------NKVHIKRYDGHSIK-SAAAA-N------DFSCTVHLF-SSEGINFTKYPIKSK 191 (328)
T ss_dssp CSTHHHHHHHHHHTT------------SSCEEEESSSCCC---------------CCSEEEEEE-ESSCCCTTTSCCCCC
T ss_pred CChhHHHHHHHHHhc------------CCCceEeCCCCchh-hhhhc-c------cCCceEEEE-ECCCCCCcCcccccC
Confidence 999999999999984 68999999999553 32221 1 234566777 568888886 8
Q ss_pred cccceEEEEcCCcCCccc-HHHHHHHhhh--cccccccccc
Q 001337 1059 HSANRVIIVDGSWNPTYD-LQAIYRAWRC--MDKQSQFLLT 1096 (1097)
Q Consensus 1059 ~~An~VIi~D~~WNP~~~-~QAiGRa~Ri--GQkK~V~VYr 1096 (1097)
+.|++||+||++|||..+ .||+.|+||+ ||+|+|.|||
T Consensus 192 ~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~R 232 (328)
T 3hgt_A 192 ARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVR 232 (328)
T ss_dssp SCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEE
T ss_pred CCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEE
Confidence 999999999999999998 9999999999 7899999997
No 27
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.92 E-value=1.5e-25 Score=253.48 Aligned_cols=102 Identities=20% Similarity=0.237 Sum_probs=90.9
Q ss_pred CCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccceeeEEEeeeccccc
Q 001337 975 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 1054 (1097)
Q Consensus 975 ~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg~ 1054 (1097)
.+.++|||+++...++.+...|. .+..++|+++..+|.++++.|+++ ..+ +|++|.++++
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~----------------~~~~~~~~~~~~~r~~~~~~f~~~---~~~-vlv~T~~~~~ 278 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD----------------NAIELRGDLPQSVRNRNIDAFREG---EYD-MLITTDVASR 278 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT----------------TEEEECTTSCHHHHHHHHHHHHTT---SCS-EEEECHHHHT
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh----------------hhhhhcCCCCHHHHHHHHHHHHcC---CCc-EEEEcCcccc
Confidence 46899999999988888877765 367899999999999999999973 333 5889999999
Q ss_pred cceecccceEEEEcCCcCCcccHHHHHHHhhhcccccccccc
Q 001337 1055 GINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLLT 1096 (1097)
Q Consensus 1055 GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VYr 1096 (1097)
|+|++.+++||+++++|++....|++||++|.||...+++|.
T Consensus 279 Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~ 320 (337)
T 2z0m_A 279 GLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFI 320 (337)
T ss_dssp TCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEE
T ss_pred CCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEE
Confidence 999999999999999999999999999999999999888774
No 28
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.91 E-value=4.2e-25 Score=255.21 Aligned_cols=117 Identities=24% Similarity=0.320 Sum_probs=101.7
Q ss_pred ceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccc
Q 001337 961 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 1040 (1097)
Q Consensus 961 Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~ 1040 (1097)
|+..+.+++... .+.++|||+++...++.+...|.. .|+.+..++|+++..+|.++++.|+++
T Consensus 230 ~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~------------~~~~~~~~~~~~~~~~r~~~~~~f~~g--- 292 (395)
T 3pey_A 230 KFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKS------------EGHEVSILHGDLQTQERDRLIDDFREG--- 292 (395)
T ss_dssp HHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHH------------TTCCCEEECTTSCHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHh------------cCCcEEEeCCCCCHHHHHHHHHHHHCC---
Confidence 445555555543 358999999999999999999985 578899999999999999999999873
Q ss_pred eeeEEEeeeccccccceecccceEEEEcCCc------CCcccHHHHHHHhhhccccccccc
Q 001337 1041 RVKCTLISTRAGSLGINLHSANRVIIVDGSW------NPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1041 ~v~VlLiStkagg~GLNL~~An~VIi~D~~W------NP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
..+ +|++|.++++|||++++++||++|++| ++....|++||++|.|+...+++|
T Consensus 293 ~~~-vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~ 352 (395)
T 3pey_A 293 RSK-VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISF 352 (395)
T ss_dssp SCC-EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred CCC-EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEE
Confidence 333 589999999999999999999999999 999999999999999998777665
No 29
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.89 E-value=4.3e-23 Score=243.80 Aligned_cols=116 Identities=23% Similarity=0.285 Sum_probs=101.4
Q ss_pred ceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccc
Q 001337 961 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 1040 (1097)
Q Consensus 961 Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~ 1040 (1097)
|...|.++|... +.++|||++....++.+...|.. .|+.+..++|+++..+|.++++.|+++
T Consensus 288 k~~~l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~------------~~~~~~~lhg~~~~~~R~~~l~~F~~g--- 349 (434)
T 2db3_A 288 KRSKLIEILSEQ---ADGTIVFVETKRGADFLASFLSE------------KEFPTTSIHGDRLQSQREQALRDFKNG--- 349 (434)
T ss_dssp HHHHHHHHHHHC---CTTEEEECSSHHHHHHHHHHHHH------------TTCCEEEESTTSCHHHHHHHHHHHHTS---
T ss_pred HHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHh------------CCCCEEEEeCCCCHHHHHHHHHHHHcC---
Confidence 555666666653 34599999999999999999985 588899999999999999999999873
Q ss_pred eeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhccccccccc
Q 001337 1041 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1041 ~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
..+ +|++|.++++|||++.+++||+||++|++..+.|++||++|.|++-.+++|
T Consensus 350 ~~~-vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~ 403 (434)
T 2db3_A 350 SMK-VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSF 403 (434)
T ss_dssp SCS-EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred CCc-EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEE
Confidence 333 589999999999999999999999999999999999999999998776654
No 30
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.89 E-value=1.5e-23 Score=244.86 Aligned_cols=118 Identities=20% Similarity=0.275 Sum_probs=100.5
Q ss_pred ceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccc
Q 001337 961 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 1040 (1097)
Q Consensus 961 Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~ 1040 (1097)
|...|.+++... ..+.++|||+++...++.+..+|.. .|+.+..++|+++.++|.++++.|+++
T Consensus 262 ~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~------------~~~~~~~~h~~~~~~~r~~~~~~f~~g--- 325 (417)
T 2i4i_A 262 KRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYH------------EGYACTSIHGDRSQRDREEALHQFRSG--- 325 (417)
T ss_dssp HHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHH------------TTCCEEEECTTSCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHH------------CCCCeeEecCCCCHHHHHHHHHHHHcC---
Confidence 445566666653 3468999999999999999999985 578899999999999999999999873
Q ss_pred eeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhccccccccc
Q 001337 1041 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1041 ~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
..+ +|++|.++++|||++.+++||+||++|++....|++||++|.|+.-.+++|
T Consensus 326 ~~~-vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 379 (417)
T 2i4i_A 326 KSP-ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 379 (417)
T ss_dssp SSC-EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEE
T ss_pred CCC-EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEE
Confidence 333 588999999999999999999999999999999999999999998776655
No 31
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.88 E-value=3.5e-23 Score=241.00 Aligned_cols=117 Identities=23% Similarity=0.275 Sum_probs=101.0
Q ss_pred ceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccc
Q 001337 961 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 1040 (1097)
Q Consensus 961 Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~ 1040 (1097)
|+..|.+++... .+.++|||++....+..+...|.. .|+.+..++|+++..+|..+++.|+++
T Consensus 253 ~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~------------~~~~~~~~~~~~~~~~r~~~~~~f~~g--- 315 (412)
T 3fht_A 253 KFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSK------------EGHQVALLSGEMMVEQRAAVIERFREG--- 315 (412)
T ss_dssp HHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHH------------TTCCCEEECTTSCHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHh------------CCCeEEEecCCCCHHHHHHHHHHHHCC---
Confidence 556666666654 357999999999999999999986 478899999999999999999999973
Q ss_pred eeeEEEeeeccccccceecccceEEEEcCCcCC------cccHHHHHHHhhhccccccccc
Q 001337 1041 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNP------TYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1041 ~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP------~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
.++ +|++|.++++|||++++++||++|++|++ ....|++||++|.|+...++++
T Consensus 316 ~~~-vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~ 375 (412)
T 3fht_A 316 KEK-VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNM 375 (412)
T ss_dssp SCS-EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred CCc-EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEE
Confidence 333 58999999999999999999999999987 4789999999999988766544
No 32
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.87 E-value=1e-22 Score=245.99 Aligned_cols=307 Identities=17% Similarity=0.183 Sum_probs=206.5
Q ss_pred ccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch-hhhhhhH
Q 001337 564 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWK 642 (1097)
Q Consensus 564 ~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~-sLv~qW~ 642 (1097)
..++|||.+++..++ .+..+++..++|.|||+..+..+ +.. .+++|||+|. +|+.||.
T Consensus 24 ~~~r~~Q~~~i~~il--------------~g~d~lv~apTGsGKTl~~~lp~--l~~-----~g~~lvi~P~~aL~~q~~ 82 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVL--------------SGRDCLVVMPTGGGKSLCYQIPA--LLL-----NGLTVVVSPLISLMKDQV 82 (523)
T ss_dssp SSCCTTHHHHHHHHH--------------TTCCEEEECSCHHHHHHHHHHHH--HHS-----SSEEEEECSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH--------------cCCCEEEECCCCcHHHHHHHHHH--HHh-----CCCEEEECChHHHHHHHH
Confidence 368999999998774 24578999999999997544322 221 2578999995 6889999
Q ss_pred HhhcccccCCCcccEEEeecccc-hhHHHHHHHHH-HhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEE
Q 001337 643 QEFMKWRPSELKPLRVFMLEDVS-RDRRAELLAKW-RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 720 (1097)
Q Consensus 643 ~Ei~k~~p~~~~~l~V~~~~~~~-~~~r~~~l~~~-~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVI 720 (1097)
+++.++. +.+..+++.. ...+....... ....+++++|++.+... .+. ..+....+++||
T Consensus 83 ~~l~~~g------i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~---------~~~---~~l~~~~~~~vV 144 (523)
T 1oyw_A 83 DQLQANG------VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLD---------NFL---EHLAHWNPVLLA 144 (523)
T ss_dssp HHHHHTT------CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTST---------THH---HHHTTSCEEEEE
T ss_pred HHHHHcC------CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCh---------HHH---HHHhhCCCCEEE
Confidence 9998763 3344444332 23333333322 23478999999987531 111 112224788999
Q ss_pred ecccchhcccch---hHHHHH----hhhccceeeeeccCccccchhhhhhhhhhhhhccCCCchhhhhhccCCCCCCccc
Q 001337 721 CDEAHMIKNTRA---DTTQAL----KQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHT 793 (1097)
Q Consensus 721 iDEAH~iKN~~S---~~~kal----~~l~a~~RllLTGTPiqNnl~El~~Ll~fL~p~~lgs~~~F~~~f~~pi~~g~~~ 793 (1097)
|||||.+..... ..+..+ ..+....+++|||||-.....++...+.+-.|..+ ...+
T Consensus 145 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~------~~~~---------- 208 (523)
T 1oyw_A 145 VDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ------ISSF---------- 208 (523)
T ss_dssp ESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE------ECCC----------
T ss_pred EeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE------eCCC----------
Confidence 999999864321 122333 23345678999999976544444333321110000 0000
Q ss_pred CCcccchhhcccchhHHHHHHhhHHhhhchhhhccCCCCceEEEEEEecChHHHHHHHHhhhhcCCcccccchHHHHHhh
Q 001337 794 NSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSF 873 (1097)
Q Consensus 794 ~s~~~d~~~~~~r~~~L~~~L~~fvlRr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~il~~~~~~~~~~~~~~~~~~~ 873 (1097)
.-|. ..+.+.
T Consensus 209 -----------------------------------~r~~-l~~~v~---------------------------------- 218 (523)
T 1oyw_A 209 -----------------------------------DRPN-IRYMLM---------------------------------- 218 (523)
T ss_dssp -----------------------------------CCTT-EEEEEE----------------------------------
T ss_pred -----------------------------------CCCc-eEEEEE----------------------------------
Confidence 0000 000000
Q ss_pred hhhHHHHHHHhcCcceeeecccCCCCCccccccCCCCCCCccceeeccCcCCccccccccCCCCccchhhhhhhhhcccc
Q 001337 874 FAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTY 953 (1097)
Q Consensus 874 l~~l~~Lrqi~~hP~Ll~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~ 953 (1097)
T Consensus 219 -------------------------------------------------------------------------------- 218 (523)
T 1oyw_A 219 -------------------------------------------------------------------------------- 218 (523)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCcceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHh
Q 001337 954 KELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVER 1033 (1097)
Q Consensus 954 ~~~~~S~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~ 1033 (1097)
....|+..|.++|... .+.++|||+.+....+.+...|.. .|+.+..++|+++.++|..+++.
T Consensus 219 ---~~~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~------------~g~~~~~~h~~l~~~~R~~~~~~ 281 (523)
T 1oyw_A 219 ---EKFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQS------------KGISAAAYHAGLENNVRADVQEK 281 (523)
T ss_dssp ---ECSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHH------------TTCCEEEECTTSCHHHHHHHHHH
T ss_pred ---eCCCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHH------------CCCCEEEecCCCCHHHHHHHHHH
Confidence 0011333455555543 468999999999999999999985 58889999999999999999999
Q ss_pred hcccccceeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhcccccccccc
Q 001337 1034 FNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLLT 1096 (1097)
Q Consensus 1034 Fn~~~n~~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VYr 1096 (1097)
|.++ .++ +|++|.+.|.|||++.++.||++++|+++....|++||++|.|+...+++|.
T Consensus 282 f~~g---~~~-vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~ 340 (523)
T 1oyw_A 282 FQRD---DLQ-IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340 (523)
T ss_dssp HHTT---SCS-EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred HHcC---CCe-EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEe
Confidence 9974 333 5889999999999999999999999999999999999999999988877653
No 33
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.86 E-value=6.4e-22 Score=241.94 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=100.5
Q ss_pred hhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccceee
Q 001337 964 LLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVK 1043 (1097)
Q Consensus 964 ~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~~v~ 1043 (1097)
.|.++|.... .+.++|||+.+....+.+...|.. .|+.+..++|+++..+|..+++.|.++ .++
T Consensus 256 ~l~~~l~~~~-~~~~~IVf~~sr~~~e~la~~L~~------------~g~~~~~~h~~l~~~~R~~~~~~F~~g---~~~ 319 (591)
T 2v1x_A 256 DIVKLINGRY-KGQSGIIYCFSQKDSEQVTVSLQN------------LGIHAGAYHANLEPEDKTTVHRKWSAN---EIQ 319 (591)
T ss_dssp HHHHHHTTTT-TTCEEEEECSSHHHHHHHHHHHHH------------TTCCEEEECTTSCHHHHHHHHHHHHTT---SSS
T ss_pred HHHHHHHHhc-cCCCeEEEeCcHHHHHHHHHHHHH------------CCCCEEEecCCCCHHHHHHHHHHHHcC---CCe
Confidence 3444443322 468999999999999999999985 588999999999999999999999973 333
Q ss_pred EEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhcccccccccc
Q 001337 1044 CTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLLT 1096 (1097)
Q Consensus 1044 VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VYr 1096 (1097)
+|++|.+.|.|||++.++.||++++++++..+.|++||++|.|+...+++|+
T Consensus 320 -VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~ 371 (591)
T 2v1x_A 320 -VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYY 371 (591)
T ss_dssp -EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred -EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEE
Confidence 5889999999999999999999999999999999999999999988877664
No 34
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.86 E-value=5e-22 Score=259.09 Aligned_cols=311 Identities=17% Similarity=0.241 Sum_probs=209.9
Q ss_pred ccccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchh-hhhh
Q 001337 562 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHN 640 (1097)
Q Consensus 562 l~~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~s-Lv~q 640 (1097)
+...++|||.+++..++..... .....+|++.+||+|||++++..+...... .+++|||||+. |+.|
T Consensus 600 f~~~~t~~Q~~ai~~il~~~~~--------g~p~d~ll~~~TGsGKT~val~aa~~~~~~----g~~vlvlvPt~~La~Q 667 (1151)
T 2eyq_A 600 FPFETTPDQAQAINAVLSDMCQ--------PLAMDRLVCGDVGFGKTEVAMRAAFLAVDN----HKQVAVLVPTTLLAQQ 667 (1151)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHS--------SSCCEEEEECCCCTTTHHHHHHHHHHHHTT----TCEEEEECSSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhc--------CCcCcEEEECCCCCCHHHHHHHHHHHHHHh----CCeEEEEechHHHHHH
Confidence 3456799999999988654310 122378999999999999877555444332 35899999976 7889
Q ss_pred hHHhhcccccCCCcccEEEeecccc-hhHHHHHHHHHHh-cCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCE
Q 001337 641 WKQEFMKWRPSELKPLRVFMLEDVS-RDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDI 718 (1097)
Q Consensus 641 W~~Ei~k~~p~~~~~l~V~~~~~~~-~~~r~~~l~~~~~-~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dl 718 (1097)
|.++|.++++. .++.+..+.+.. ...+...+..... ..+|+|+|+..+.... .-..+++
T Consensus 668 ~~~~~~~~~~~--~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~-----------------~~~~l~l 728 (1151)
T 2eyq_A 668 HYDNFRDRFAN--WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV-----------------KFKDLGL 728 (1151)
T ss_dssp HHHHHHHHSTT--TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCC-----------------CCSSEEE
T ss_pred HHHHHHHHhhc--CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCc-----------------cccccce
Confidence 99999988764 235666655433 2233333443333 4789999998764210 1126789
Q ss_pred EEecccchhcccchhHHHHHhhhc-cceeeeeccCccccchhhhhhhhhhhhhccCCCchhhhhhccCCCCCCcccCCcc
Q 001337 719 LVCDEAHMIKNTRADTTQALKQVK-CQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTS 797 (1097)
Q Consensus 719 VIiDEAH~iKN~~S~~~kal~~l~-a~~RllLTGTPiqNnl~El~~Ll~fL~p~~lgs~~~F~~~f~~pi~~g~~~~s~~ 797 (1097)
||+||+|++. ......+..+. ..++++|||||+.+.+.....- +
T Consensus 729 vIiDEaH~~g---~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~---~----------------------------- 773 (1151)
T 2eyq_A 729 LIVDEEHRFG---VRHKERIKAMRANVDILTLTATPIPRTLNMAMSG---M----------------------------- 773 (1151)
T ss_dssp EEEESGGGSC---HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTT---T-----------------------------
T ss_pred EEEechHhcC---hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhc---C-----------------------------
Confidence 9999999973 34455566664 4578999999986542211000 0
Q ss_pred cchhhcccchhHHHHHHhhHHhhhchhhhccCCCCce---EEEEEEecChHHHHHHHHhhhhcCCcccccchHHHHHhhh
Q 001337 798 EDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT---VFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFF 874 (1097)
Q Consensus 798 ~d~~~~~~r~~~L~~~L~~fvlRr~~~~v~~~LP~k~---e~vv~v~Ls~~Q~~lY~~il~~~~~~~~~~~~~~~~~~~l 874 (1097)
+....+ ..|+.. .........
T Consensus 774 -----------------------~~~~~i--~~~~~~r~~i~~~~~~~~------------------------------- 797 (1151)
T 2eyq_A 774 -----------------------RDLSII--ATPPARRLAVKTFVREYD------------------------------- 797 (1151)
T ss_dssp -----------------------SEEEEC--CCCCCBCBCEEEEEEECC-------------------------------
T ss_pred -----------------------CCceEE--ecCCCCccccEEEEecCC-------------------------------
Confidence 000000 000000 000000000
Q ss_pred hhHHHHHHHhcCcceeeecccCCCCCccccccCCCCCCCccceeeccCcCCccccccccCCCCccchhhhhhhhhccccc
Q 001337 875 AGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYK 954 (1097)
Q Consensus 875 ~~l~~Lrqi~~hP~Ll~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~ 954 (1097)
T Consensus 798 -------------------------------------------------------------------------------- 797 (1151)
T 2eyq_A 798 -------------------------------------------------------------------------------- 797 (1151)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCcceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhh
Q 001337 955 ELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERF 1034 (1097)
Q Consensus 955 ~~~~S~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~F 1034 (1097)
+......++.. ...+.+++||++....++.+...|... ..++.+..++|+++..+|.++++.|
T Consensus 798 ------~~~i~~~il~~-l~~g~qvlvf~~~v~~~~~l~~~L~~~----------~p~~~v~~lhg~~~~~eR~~il~~F 860 (1151)
T 2eyq_A 798 ------SMVVREAILRE-ILRGGQVYYLYNDVENIQKAAERLAEL----------VPEARIAIGHGQMRERELERVMNDF 860 (1151)
T ss_dssp ------HHHHHHHHHHH-HTTTCEEEEECCCSSCHHHHHHHHHHH----------CTTSCEEECCSSCCHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHH-HhcCCeEEEEECCHHHHHHHHHHHHHh----------CCCCeEEEEeCCCCHHHHHHHHHHH
Confidence 00011112222 235789999999999999999999863 2478899999999999999999999
Q ss_pred cccccceeeEEEeeeccccccceecccceEEEEcC-CcCCcccHHHHHHHhhhccccccccc
Q 001337 1035 NEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDG-SWNPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1035 n~~~n~~v~VlLiStkagg~GLNL~~An~VIi~D~-~WNP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
.+ +.++ +|++|.++++|||++.+++||++++ .|++....|++||++|.|++..++++
T Consensus 861 ~~---g~~~-VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll 918 (1151)
T 2eyq_A 861 HH---QRFN-VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLL 918 (1151)
T ss_dssp HT---TSCC-EEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEE
T ss_pred Hc---CCCc-EEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEE
Confidence 97 3444 5889999999999999999999998 69999999999999999988777765
No 35
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.86 E-value=1.1e-21 Score=229.71 Aligned_cols=105 Identities=18% Similarity=0.148 Sum_probs=87.8
Q ss_pred ceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCcee-eccCCccchHHHHHHHhhccccc
Q 001337 961 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWY-RLDGRTESSERQKLVERFNEPLN 1039 (1097)
Q Consensus 961 Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~-ridGsts~~eR~~~i~~Fn~~~n 1039 (1097)
|...|.++|.. .+.++|||++....++.+...|.. .|+.+. .++|. +|. ++.|++
T Consensus 240 ~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~------------~~~~~~~~~h~~----~r~--~~~f~~--- 295 (414)
T 3oiy_A 240 SKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKR------------FKFNVGETWSEF----EKN--FEDFKV--- 295 (414)
T ss_dssp CHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHH------------TTCCEEESSSCH----HHH--HHHHHT---
T ss_pred HHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHH------------cCCceehhhcCc----chH--HHHHhC---
Confidence 44556666665 358999999999999999999986 478887 88884 444 999997
Q ss_pred ceeeEEEee---eccccccceecc-cceEEEEcCC--cCCcccHHHHHHHhhhccc
Q 001337 1040 KRVKCTLIS---TRAGSLGINLHS-ANRVIIVDGS--WNPTYDLQAIYRAWRCMDK 1089 (1097)
Q Consensus 1040 ~~v~VlLiS---tkagg~GLNL~~-An~VIi~D~~--WNP~~~~QAiGRa~RiGQk 1089 (1097)
+.++|++.+ |.++++|||+++ +++||+||++ +++....|++||++|.|+.
T Consensus 296 g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~ 351 (414)
T 3oiy_A 296 GKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNG 351 (414)
T ss_dssp TSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETT
T ss_pred CCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCC
Confidence 455555444 999999999999 9999999999 9999999999999999973
No 36
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.86 E-value=9.5e-22 Score=240.73 Aligned_cols=109 Identities=19% Similarity=0.297 Sum_probs=95.9
Q ss_pred cCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccceeeEEEeeecccc
Q 001337 974 NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGS 1053 (1097)
Q Consensus 974 ~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg 1053 (1097)
..+.++|||+.....++.+...|.... ..|+.+..++|+++..+|..+++.|.+ +.++ +|++|.+++
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~---------~~~~~v~~~hg~~~~~~R~~~~~~F~~---g~~~-vLVaT~~~~ 352 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEF---------KKDLPILEFHGKITQNKRTSLVKRFKK---DESG-ILVCTDVGA 352 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHH---------TTTSCEEEESTTSCHHHHHHHHHHHHH---CSSE-EEEECGGGT
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhh---------cCCCcEEEecCCCCHHHHHHHHHHhhc---CCCe-EEEEcchhh
Confidence 346799999999999999999998521 238899999999999999999999997 3343 588999999
Q ss_pred ccceecccceEEEEcCCcCCcccHHHHHHHhhhccccccccc
Q 001337 1054 LGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1054 ~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
+|||++.+++||++++++++....|++||++|.|+.-.+++|
T Consensus 353 ~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~ 394 (579)
T 3sqw_A 353 RGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLF 394 (579)
T ss_dssp SSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEE
T ss_pred cCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEE
Confidence 999999999999999999999999999999999988766654
No 37
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.85 E-value=4.1e-22 Score=240.18 Aligned_cols=117 Identities=21% Similarity=0.266 Sum_probs=78.9
Q ss_pred ceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccc
Q 001337 961 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 1040 (1097)
Q Consensus 961 Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~ 1040 (1097)
|...+.+++... .+.++|||+.....+..+...|.. .|+.+..++|+++..+|..+++.|+++
T Consensus 344 k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~------------~~~~v~~~hg~~~~~~R~~il~~f~~g--- 406 (508)
T 3fho_A 344 KYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTA------------DGHTVACLTGNLEGAQRDAIMDSFRVG--- 406 (508)
T ss_dssp HHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTT------------TTCCCCEEC-----CTTGGGTHHHHSS---
T ss_pred HHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHh------------CCCcEEEEeCCCCHHHHHHHHHHHHCC---
Confidence 334444555433 357999999999999999999985 578899999999999999999999873
Q ss_pred eeeEEEeeeccccccceecccceEEEEcCC------cCCcccHHHHHHHhhhccccccccc
Q 001337 1041 RVKCTLISTRAGSLGINLHSANRVIIVDGS------WNPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1041 ~v~VlLiStkagg~GLNL~~An~VIi~D~~------WNP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
..+ +|++|.++++|+|++.++.||+++++ +++....|++||++|.|+...+++|
T Consensus 407 ~~~-VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 407 TSK-VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp SCC-CCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred CCe-EEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 333 58899999999999999999999999 7889999999999999988777655
No 38
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.85 E-value=1.9e-21 Score=237.01 Aligned_cols=109 Identities=19% Similarity=0.297 Sum_probs=95.8
Q ss_pred cCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccceeeEEEeeecccc
Q 001337 974 NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGS 1053 (1097)
Q Consensus 974 ~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg 1053 (1097)
..+.++|||+.....++.+...|.... ..|+.+..++|+++..+|..+++.|.+ +.++ +|++|.+++
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~---------~~~~~v~~~h~~~~~~~R~~~~~~f~~---g~~~-vLvaT~~~~ 403 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEF---------KKDLPILEFHGKITQNKRTSLVKRFKK---DESG-ILVCTDVGA 403 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHH---------TTTSCEEEESTTSCHHHHHHHHHHHHH---CSSE-EEEECGGGT
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhc---------cCCceEEEecCCCCHHHHHHHHHHHhc---CCCC-EEEEcchhh
Confidence 346799999999999999999998521 238889999999999999999999997 3343 588999999
Q ss_pred ccceecccceEEEEcCCcCCcccHHHHHHHhhhccccccccc
Q 001337 1054 LGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1054 ~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
.|||++++++||++|+++++....|++||++|.|+.-.+++|
T Consensus 404 ~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~ 445 (563)
T 3i5x_A 404 RGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLF 445 (563)
T ss_dssp SSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEE
T ss_pred cCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEE
Confidence 999999999999999999999999999999999987666554
No 39
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.83 E-value=2.6e-21 Score=241.91 Aligned_cols=314 Identities=17% Similarity=0.189 Sum_probs=200.2
Q ss_pred ccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch-hhhhhhH
Q 001337 564 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWK 642 (1097)
Q Consensus 564 ~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~-sLv~qW~ 642 (1097)
..|.|+|.+++..++.... .......|+..++|.|||+.++..+...+.. ...+||++|. .|..||.
T Consensus 367 f~lt~~Q~~ai~~I~~~l~--------~~~~~~~Ll~a~TGSGKTlvall~il~~l~~----g~qvlvlaPtr~La~Q~~ 434 (780)
T 1gm5_A 367 FKLTNAQKRAHQEIRNDMI--------SEKPMNRLLQGDVGSGKTVVAQLAILDNYEA----GFQTAFMVPTSILAIQHY 434 (780)
T ss_dssp SCCCHHHHHHHHHHHHHHH--------SSSCCCCEEECCSSSSHHHHHHHHHHHHHHH----TSCEEEECSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhcc--------ccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHH
Confidence 3799999999988765432 1233578999999999999887776665543 2589999996 5788999
Q ss_pred HhhcccccCCCcccEEEeecccch-hHHHHHHHHHHh-cCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEE
Q 001337 643 QEFMKWRPSELKPLRVFMLEDVSR-DRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 720 (1097)
Q Consensus 643 ~Ei~k~~p~~~~~l~V~~~~~~~~-~~r~~~l~~~~~-~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVI 720 (1097)
+++.+|++. ..+++..+++... ..+...+..... ..+|+|.|+..+... +...++++||
T Consensus 435 ~~l~~~~~~--~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~-----------------~~~~~l~lVV 495 (780)
T 1gm5_A 435 RRTVESFSK--FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED-----------------VHFKNLGLVI 495 (780)
T ss_dssp HHHHHHHTC--SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC-----------------CCCSCCCEEE
T ss_pred HHHHHHhhh--cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhh-----------------hhccCCceEE
Confidence 999998854 2366666666543 334444444433 368999999776421 1123789999
Q ss_pred ecccchhcccchhHHHHHhhh-ccceeeeeccCccccchhhhhhhhhhhhhccCCCchhhhhhccCCCCCCcccCCcccc
Q 001337 721 CDEAHMIKNTRADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSED 799 (1097)
Q Consensus 721 iDEAH~iKN~~S~~~kal~~l-~a~~RllLTGTPiqNnl~El~~Ll~fL~p~~lgs~~~F~~~f~~pi~~g~~~~s~~~d 799 (1097)
+||+|++.... ...+... ...+.++|||||+...+...+ ++.. .
T Consensus 496 IDEaHr~g~~q---r~~l~~~~~~~~vL~mSATp~p~tl~~~~----------~g~~-----------~----------- 540 (780)
T 1gm5_A 496 IDEQHRFGVKQ---REALMNKGKMVDTLVMSATPIPRSMALAF----------YGDL-----------D----------- 540 (780)
T ss_dssp EESCCCC--------CCCCSSSSCCCEEEEESSCCCHHHHHHH----------TCCS-----------S-----------
T ss_pred ecccchhhHHH---HHHHHHhCCCCCEEEEeCCCCHHHHHHHH----------hCCc-----------c-----------
Confidence 99999973221 1111111 356789999999764322110 0000 0
Q ss_pred hhhcccchhHHHHHHhhHHhhhchhhhccCCCCceEEEEEEecChHHHHHHHHhhhhcCCcccccchHHHHHhhhhhHHH
Q 001337 800 VKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQA 879 (1097)
Q Consensus 800 ~~~~~~r~~~L~~~L~~fvlRr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~il~~~~~~~~~~~~~~~~~~~l~~l~~ 879 (1097)
. .+...+|+....+...-.
T Consensus 541 -----------------------~-s~i~~~p~~r~~i~~~~~------------------------------------- 559 (780)
T 1gm5_A 541 -----------------------V-TVIDEMPPGRKEVQTMLV------------------------------------- 559 (780)
T ss_dssp -----------------------C-EEECCCCSSCCCCEECCC-------------------------------------
T ss_pred -----------------------e-eeeeccCCCCcceEEEEe-------------------------------------
Confidence 0 000112221000000000
Q ss_pred HHHHhcCcceeeecccCCCCCccccccCCCCCCCccceeeccCcCCccccccccCCCCccchhhhhhhhhcccccccccC
Q 001337 880 LAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYS 959 (1097)
Q Consensus 880 Lrqi~~hP~Ll~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S 959 (1097)
..
T Consensus 560 ------------------------------------------------------------------------------~~ 561 (780)
T 1gm5_A 560 ------------------------------------------------------------------------------PM 561 (780)
T ss_dssp ------------------------------------------------------------------------------CS
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred cceehhhHHHhhhccCCCceeEEecCC--------CchhHHHHHHhc-CCCCCCCCcccccCCceeeccCCccchHHHHH
Q 001337 960 GKMVLLLDILTMCSNMGDKSLVFSQSI--------PTLDLIEFYLSK-LPRPGKQGKLWKKGKDWYRLDGRTESSERQKL 1030 (1097)
Q Consensus 960 ~Kl~~L~eiL~~~~~~geKVLIFSq~~--------~~ld~L~~~L~~-l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~ 1030 (1097)
.+...+.+.+......+.+++||+... ..+..+.+.|.. . ..++.+..++|+++..+|.++
T Consensus 562 ~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~----------~~~~~v~~lHG~m~~~eR~~v 631 (780)
T 1gm5_A 562 DRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEV----------FPEFKLGLMHGRLSQEEKDRV 631 (780)
T ss_dssp STHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSC----------C---CBCCCCSSSCCSCSHHH
T ss_pred chHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhh----------cCCCcEEEEeCCCCHHHHHHH
Confidence 111223334444444566777777654 234556666654 2 246789999999999999999
Q ss_pred HHhhcccccceeeEEEeeeccccccceecccceEEEEcCCc-CCcccHHHHHHHhhhcccccccccc
Q 001337 1031 VERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW-NPTYDLQAIYRAWRCMDKQSQFLLT 1096 (1097)
Q Consensus 1031 i~~Fn~~~n~~v~VlLiStkagg~GLNL~~An~VIi~D~~W-NP~~~~QAiGRa~RiGQkK~V~VYr 1096 (1097)
++.|.++ .++ +|++|.++++|||++.++.||++++++ +.+...|++||++|.|+.-.|+++.
T Consensus 632 ~~~F~~G---~~~-ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~ 694 (780)
T 1gm5_A 632 MLEFAEG---RYD-ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVV 694 (780)
T ss_dssp HHHHTTT---SSS-BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCC
T ss_pred HHHHHCC---CCe-EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEE
Confidence 9999973 343 488999999999999999999999984 7888899999999999887776653
No 40
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.82 E-value=2e-21 Score=232.18 Aligned_cols=117 Identities=23% Similarity=0.276 Sum_probs=0.0
Q ss_pred ceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccc
Q 001337 961 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 1040 (1097)
Q Consensus 961 Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~ 1040 (1097)
|+..|..++... .+.++|||+++...+..+...|.. .|+.+..++|+++..+|..+++.|.+ +
T Consensus 320 ~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~------------~~~~v~~lh~~~~~~~R~~~~~~f~~---g 382 (479)
T 3fmp_B 320 KFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSK------------EGHQVALLSGEMMVEQRAAVIERFRE---G 382 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHh------------CCccEEEecCCCCHHHHHHHHHHHHc---C
Confidence 444455555433 246899999999999999999985 47889999999999999999999997 3
Q ss_pred eeeEEEeeeccccccceecccceEEEEcCCcCC------cccHHHHHHHhhhccccccccc
Q 001337 1041 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNP------TYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1041 ~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP------~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
.++ +|++|.+++.|||+++++.||+||++|++ ....|++||++|.|+.-.++++
T Consensus 383 ~~~-iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~ 442 (479)
T 3fmp_B 383 KEK-VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNM 442 (479)
T ss_dssp -------------------------------------------------------------
T ss_pred CCc-EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEE
Confidence 444 58999999999999999999999999876 5899999999999987666554
No 41
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.80 E-value=5.1e-20 Score=237.00 Aligned_cols=125 Identities=20% Similarity=0.094 Sum_probs=94.1
Q ss_pred hhHHHhhhccC-CCceeEEecCCCchhHHHHHHhcCCCCCCCC-------------ccc--------------ccCCcee
Q 001337 965 LLDILTMCSNM-GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQG-------------KLW--------------KKGKDWY 1016 (1097)
Q Consensus 965 L~eiL~~~~~~-geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~-------------~~~--------------~~Gi~~~ 1016 (1097)
+..++..+... +.++|||+.+....+.+...|...+...... .+- .-...+.
T Consensus 331 l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~ 410 (1010)
T 2xgj_A 331 IYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIG 410 (1010)
T ss_dssp HHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEE
T ss_pred HHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCee
Confidence 34444444333 4599999999999999999887643211000 000 0012367
Q ss_pred eccCCccchHHHHHHHhhcccccceeeEEEeeeccccccceecccceEEE----EcC----CcCCcccHHHHHHHhhhcc
Q 001337 1017 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVII----VDG----SWNPTYDLQAIYRAWRCMD 1088 (1097)
Q Consensus 1017 ridGsts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg~GLNL~~An~VIi----~D~----~WNP~~~~QAiGRa~RiGQ 1088 (1097)
.++|++++.+|..+++.|++ +.++ +|++|.+++.|||+++.+.||. ||. +|+|....|++||++|.|+
T Consensus 411 ~~Hggl~~~eR~~ve~~F~~---G~ik-VLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~ 486 (1010)
T 2xgj_A 411 IHHSGLLPILKEVIEILFQE---GFLK-VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGL 486 (1010)
T ss_dssp EESTTSCHHHHHHHHHHHHT---TCCS-EEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTT
T ss_pred EECCCCCHHHHHHHHHHHhc---CCCc-EEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCC
Confidence 79999999999999999997 4454 5889999999999999999999 999 9999999999999999998
Q ss_pred ccccc
Q 001337 1089 KQSQF 1093 (1097)
Q Consensus 1089 kK~V~ 1093 (1097)
....+
T Consensus 487 d~~G~ 491 (1010)
T 2xgj_A 487 DDRGI 491 (1010)
T ss_dssp CSSEE
T ss_pred CCceE
Confidence 65433
No 42
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.6e-19 Score=234.20 Aligned_cols=114 Identities=19% Similarity=0.114 Sum_probs=85.4
Q ss_pred CCceeEEecCCCchhHHHHHHhcCCCCCCCC-------------------------ccc--ccCCceeeccCCccchHHH
Q 001337 976 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQG-------------------------KLW--KKGKDWYRLDGRTESSERQ 1028 (1097)
Q Consensus 976 geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~-------------------------~~~--~~Gi~~~ridGsts~~eR~ 1028 (1097)
+.++|||+......+.+...|...+...... ..+ .-...+..++|++++.+|.
T Consensus 441 ~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~ 520 (1108)
T 3l9o_A 441 YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE 520 (1108)
T ss_dssp CCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHH
T ss_pred CCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHH
Confidence 5699999999999999988886421110000 000 0011267899999999999
Q ss_pred HHHHhhcccccceeeEEEeeeccccccceecccceEEEEcCCcCCcc--------cHHHHHHHhhhccccccc
Q 001337 1029 KLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY--------DLQAIYRAWRCMDKQSQF 1093 (1097)
Q Consensus 1029 ~~i~~Fn~~~n~~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~--------~~QAiGRa~RiGQkK~V~ 1093 (1097)
.+++.|.+ +.++ +|++|.+++.|||+++.+.||.++.+|++.. +.|++||++|.|+...-+
T Consensus 521 ~v~~~F~~---G~ik-VLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~ 589 (1108)
T 3l9o_A 521 VIEILFQE---GFLK-VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGI 589 (1108)
T ss_dssp HHHHHHHH---TCCC-EEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEE
T ss_pred HHHHHHhC---CCCe-EEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceE
Confidence 99999997 4444 5889999999999999999999999888876 889999999999766533
No 43
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.74 E-value=2.2e-18 Score=220.84 Aligned_cols=170 Identities=15% Similarity=0.175 Sum_probs=108.3
Q ss_pred ccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecc-hhhhhhhH
Q 001337 564 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNWK 642 (1097)
Q Consensus 564 ~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P-~sLv~qW~ 642 (1097)
..|+|||..++.++++.+.....+...+..+.+|++.+.+|+|||++++.++. ++... ....++||||| ..|..||.
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~-ll~~~-~~~~rvLvlvpr~eL~~Q~~ 347 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAAR-LATEL-DFIDKVFFVVDRKDLDYQTM 347 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHH-HHTTC-TTCCEEEEEECGGGCCHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHH-HHHhc-CCCceEEEEeCcHHHHHHHH
Confidence 46899999999999876643321111112346899999999999999876663 33221 22358999999 56889999
Q ss_pred HhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEec
Q 001337 643 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 722 (1097)
Q Consensus 643 ~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiD 722 (1097)
++|.+|.+... ..+.+.......+. ....+|+|+|++.|......... ......+++||+|
T Consensus 348 ~~f~~f~~~~v-------~~~~s~~~l~~~L~--~~~~~IiVtTiqkl~~~l~~~~~----------~~~~~~~~lvIiD 408 (1038)
T 2w00_A 348 KEYQRFSPDSV-------NGSENTAGLKRNLD--KDDNKIIVTTIQKLNNLMKAESD----------LPVYNQQVVFIFD 408 (1038)
T ss_dssp HHHHTTSTTCS-------SSSCCCHHHHHHHH--CSSCCEEEEEHHHHHHHHHHCCC----------CGGGGSCEEEEEE
T ss_pred HHHHHhccccc-------ccccCHHHHHHHhc--CCCCCEEEEEHHHHHHHHhcccc----------hhccccccEEEEE
Confidence 99999876421 11122211111111 13578999999998642110000 0011268899999
Q ss_pred ccchhcccchhHHHHH-hhhccceeeeeccCcccc
Q 001337 723 EAHMIKNTRADTTQAL-KQVKCQRRIALTGSPLQN 756 (1097)
Q Consensus 723 EAH~iKN~~S~~~kal-~~l~a~~RllLTGTPiqN 756 (1097)
|||+.... ..++.+ ..+....+++|||||...
T Consensus 409 EAHrs~~~--~~~~~I~~~~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 409 ECHRSQFG--EAQKNLKKKFKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp SCCTTHHH--HHHHHHHHHCSSEEEEEEESSCCCS
T ss_pred ccchhcch--HHHHHHHHhCCcccEEEEeCCcccc
Confidence 99997532 233344 445667899999999864
No 44
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.74 E-value=2.2e-18 Score=215.67 Aligned_cols=119 Identities=17% Similarity=0.117 Sum_probs=89.1
Q ss_pred HhhhccCCCceeEEecCCCchhHHHHHHhcCCC---CCCC---------Cc-----c-cccCCceeeccCCccchHHHHH
Q 001337 969 LTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPR---PGKQ---------GK-----L-WKKGKDWYRLDGRTESSERQKL 1030 (1097)
Q Consensus 969 L~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~---~~~~---------~~-----~-~~~Gi~~~ridGsts~~eR~~~ 1030 (1097)
+......+.++|||+........+...|..... +... .. + ...+..+..++|+++.++|..+
T Consensus 235 ~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v 314 (702)
T 2p6r_A 235 VEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVV 314 (702)
T ss_dssp HHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHH
T ss_pred HHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHH
Confidence 333334578999999999888888877764200 0000 00 0 0002346679999999999999
Q ss_pred HHhhcccccceeeEEEeeeccccccceecccceEEE----Ec---CCcCCcccHHHHHHHhhhccccc
Q 001337 1031 VERFNEPLNKRVKCTLISTRAGSLGINLHSANRVII----VD---GSWNPTYDLQAIYRAWRCMDKQS 1091 (1097)
Q Consensus 1031 i~~Fn~~~n~~v~VlLiStkagg~GLNL~~An~VIi----~D---~~WNP~~~~QAiGRa~RiGQkK~ 1091 (1097)
.+.|.+ +.++ +|++|.+++.|||+++.+.||. || .++++....|++||++|.|+.++
T Consensus 315 ~~~f~~---g~~~-vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~ 378 (702)
T 2p6r_A 315 EDAFRR---GNIK-VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDER 378 (702)
T ss_dssp HHHHHT---TSCC-EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSC
T ss_pred HHHHHC---CCCe-EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCC
Confidence 999997 3444 5889999999999999999998 76 68899999999999999998765
No 45
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.74 E-value=2.2e-18 Score=216.08 Aligned_cols=331 Identities=15% Similarity=0.100 Sum_probs=196.8
Q ss_pred cccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchh-hhhhhHH
Q 001337 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 643 (1097)
Q Consensus 565 ~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~s-Lv~qW~~ 643 (1097)
.|+|+|.+++..++ ..+...|++.++|.|||+++...+...+... .+++|+++|.. |+.||.+
T Consensus 30 ~l~~~Q~~~i~~~~-------------~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~il~i~P~r~La~q~~~ 93 (715)
T 2va8_A 30 KLNPPQTEAVKKGL-------------LEGNRLLLTSPTGSGKTLIAEMGIISFLLKN---GGKAIYVTPLRALTNEKYL 93 (715)
T ss_dssp BCCHHHHHHHHTTT-------------TTTCCEEEECCTTSCHHHHHHHHHHHHHHHS---CSEEEEECSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh-------------cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC---CCeEEEEeCcHHHHHHHHH
Confidence 68999999987632 2367899999999999999866555443321 35899999966 8899999
Q ss_pred hhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEecc
Q 001337 644 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 723 (1097)
Q Consensus 644 Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiDE 723 (1097)
++.++.+. .+.+....|...... .+....+|+|+|++.+..+... .......+++||+||
T Consensus 94 ~~~~~~~~---g~~v~~~~G~~~~~~-----~~~~~~~Iiv~Tpe~l~~~~~~------------~~~~l~~~~~vIiDE 153 (715)
T 2va8_A 94 TFKDWELI---GFKVAMTSGDYDTDD-----AWLKNYDIIITTYEKLDSLWRH------------RPEWLNEVNYFVLDE 153 (715)
T ss_dssp HHGGGGGG---TCCEEECCSCSSSCC-----GGGGGCSEEEECHHHHHHHHHH------------CCGGGGGEEEEEECS
T ss_pred HHHHhhcC---CCEEEEEeCCCCCch-----hhcCCCCEEEEcHHHHHHHHhC------------ChhHhhccCEEEEec
Confidence 99766442 245555554332111 1224678999999887543211 001123678999999
Q ss_pred cchhcccc--hhHHHHHhhhccceeeeeccCccccchhhhhhhhhhhhhccCCCchhhhhhccCCCCCCcccCCcccchh
Q 001337 724 AHMIKNTR--ADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVK 801 (1097)
Q Consensus 724 AH~iKN~~--S~~~kal~~l~a~~RllLTGTPiqNnl~El~~Ll~fL~p~~lgs~~~F~~~f~~pi~~g~~~~s~~~d~~ 801 (1097)
+|.+.+.. ......+..++..+.++|||||-. ..++.. |+....+ ..+
T Consensus 154 ~H~l~~~~~~~~l~~i~~~~~~~~ii~lSATl~n--~~~~~~---~l~~~~~----------~~~--------------- 203 (715)
T 2va8_A 154 LHYLNDPERGPVVESVTIRAKRRNLLALSATISN--YKQIAK---WLGAEPV----------ATN--------------- 203 (715)
T ss_dssp GGGGGCTTTHHHHHHHHHHHHTSEEEEEESCCTT--HHHHHH---HHTCEEE----------ECC---------------
T ss_pred hhhcCCcccchHHHHHHHhcccCcEEEEcCCCCC--HHHHHH---HhCCCcc----------CCC---------------
Confidence 99986422 223344455567889999999842 333322 2221110 000
Q ss_pred hcccchhHHHHHHhhHHhhhchhhhccCCCCceEEEEEEecChHHHHHHHHhhhhcCCcccccchHHHHHhhhhhHHHHH
Q 001337 802 IMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALA 881 (1097)
Q Consensus 802 ~~~~r~~~L~~~L~~fvlRr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~il~~~~~~~~~~~~~~~~~~~l~~l~~Lr 881 (1097)
.-|-.....+...-...
T Consensus 204 ---------------------------~r~~~l~~~~~~~~~~~------------------------------------ 220 (715)
T 2va8_A 204 ---------------------------WRPVPLIEGVIYPERKK------------------------------------ 220 (715)
T ss_dssp ---------------------------CCSSCEEEEEEEECSST------------------------------------
T ss_pred ---------------------------CCCCCceEEEEecCCcc------------------------------------
Confidence 00000000000000000
Q ss_pred HHhcCcceeeecccCCCCCccccccCCCCCCCccceeeccCcCCccccccccCCCCccchhhhhhhhhcccccccccCcc
Q 001337 882 QIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGK 961 (1097)
Q Consensus 882 qi~~hP~Ll~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S~K 961 (1097)
.+.-+.... . . . ..+. .
T Consensus 221 ----~~~~~~~~~--~-~--------------------------~---------------------------~~~~---~ 237 (715)
T 2va8_A 221 ----KEYNVIFKD--N-T--------------------------T---------------------------KKVH---G 237 (715)
T ss_dssp ----TEEEEEETT--S-C--------------------------E---------------------------EEEE---S
T ss_pred ----cceeeecCc--c-h--------------------------h---------------------------hhcc---c
Confidence 000000000 0 0 0 0000 0
Q ss_pred eehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCC-CCCC-----------cc------------cccCCceee
Q 001337 962 MVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRP-GKQG-----------KL------------WKKGKDWYR 1017 (1097)
Q Consensus 962 l~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~-~~~~-----------~~------------~~~Gi~~~r 1017 (1097)
...+.+++......+.++|||+........+...|...... .... .. ......+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~ 317 (715)
T 2va8_A 238 DDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAY 317 (715)
T ss_dssp SSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEE
T ss_pred chHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEE
Confidence 01123333333346789999999999999888888753210 0000 00 000134778
Q ss_pred ccCCccchHHHHHHHhhcccccceeeEEEeeeccccccceecccceEEE----Ec-------CCcCCcccHHHHHHHhhh
Q 001337 1018 LDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVII----VD-------GSWNPTYDLQAIYRAWRC 1086 (1097)
Q Consensus 1018 idGsts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg~GLNL~~An~VIi----~D-------~~WNP~~~~QAiGRa~Ri 1086 (1097)
++|+++.++|..+.+.|.+ +.++ +|++|.+++.|||+++.+.||. || .+++++...|++||++|.
T Consensus 318 ~h~~l~~~~r~~v~~~f~~---g~~~-vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~ 393 (715)
T 2va8_A 318 HHAGLSKALRDLIEEGFRQ---RKIK-VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRP 393 (715)
T ss_dssp ECTTSCHHHHHHHHHHHHT---TCSC-EEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCT
T ss_pred ECCCCCHHHHHHHHHHHHc---CCCe-EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCC
Confidence 9999999999999999997 3444 5889999999999999999998 99 799999999999999999
Q ss_pred ccccc
Q 001337 1087 MDKQS 1091 (1097)
Q Consensus 1087 GQkK~ 1091 (1097)
|+.++
T Consensus 394 g~~~~ 398 (715)
T 2va8_A 394 GFDQI 398 (715)
T ss_dssp TTCSC
T ss_pred CCCCC
Confidence 97665
No 46
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.72 E-value=5.9e-18 Score=212.34 Aligned_cols=321 Identities=18% Similarity=0.130 Sum_probs=196.1
Q ss_pred cccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHH-HHhhhccccceeeEeecch-hhhhhhH
Q 001337 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLY-TAMRSVNLGLRTALIVTPV-NVLHNWK 642 (1097)
Q Consensus 565 ~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~-~~l~~~~~~~k~~LIV~P~-sLv~qW~ 642 (1097)
.|+|||.+++..++ ..+..+|++.++|.|||+++...+. .+... .+++|+|+|. .|+.||.
T Consensus 23 ~l~~~Q~~~i~~~~-------------~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----~~~~l~i~P~raLa~q~~ 85 (720)
T 2zj8_A 23 SFYPPQAEALKSGI-------------LEGKNALISIPTASGKTLIAEIAMVHRILTQ----GGKAVYIVPLKALAEEKF 85 (720)
T ss_dssp BCCHHHHHHHTTTG-------------GGTCEEEEECCGGGCHHHHHHHHHHHHHHHH----CSEEEEECSSGGGHHHHH
T ss_pred CCCHHHHHHHHHHh-------------cCCCcEEEEcCCccHHHHHHHHHHHHHHHhC----CCEEEEEcCcHHHHHHHH
Confidence 68999999988632 1357899999999999998844443 33322 2589999995 6889999
Q ss_pred HhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEec
Q 001337 643 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 722 (1097)
Q Consensus 643 ~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiD 722 (1097)
+++.++.+. .+++..+.|...... .+....+|+++|++.+..+... .......+++||+|
T Consensus 86 ~~~~~l~~~---g~~v~~~~G~~~~~~-----~~~~~~~Iiv~Tpe~l~~~~~~------------~~~~l~~~~~vIiD 145 (720)
T 2zj8_A 86 QEFQDWEKI---GLRVAMATGDYDSKD-----EWLGKYDIIIATAEKFDSLLRH------------GSSWIKDVKILVAD 145 (720)
T ss_dssp HHTGGGGGG---TCCEEEECSCSSCCC-----GGGGGCSEEEECHHHHHHHHHH------------TCTTGGGEEEEEEE
T ss_pred HHHHHHHhc---CCEEEEecCCCCccc-----cccCCCCEEEECHHHHHHHHHc------------ChhhhhcCCEEEEE
Confidence 999876543 245655555332211 1234679999999987542211 00112267899999
Q ss_pred ccchhccc--chhHHHHHhhhc-cceeeeeccCccccchhhhhhhhhhhhhccCCCchhhhhhccCCCCCCcccCCcccc
Q 001337 723 EAHMIKNT--RADTTQALKQVK-CQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSED 799 (1097)
Q Consensus 723 EAH~iKN~--~S~~~kal~~l~-a~~RllLTGTPiqNnl~El~~Ll~fL~p~~lgs~~~F~~~f~~pi~~g~~~~s~~~d 799 (1097)
|+|.+... ...+...+..++ ..+.++||||+-. ..++.. |+....+ ..+
T Consensus 146 E~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n--~~~~~~---~l~~~~~----------~~~------------- 197 (720)
T 2zj8_A 146 EIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGN--PEELAE---WLNAELI----------VSD------------- 197 (720)
T ss_dssp TGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC--HHHHHH---HTTEEEE----------ECC-------------
T ss_pred CCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC--HHHHHH---HhCCccc----------CCC-------------
Confidence 99998642 233333444454 5788999999732 233322 2211100 000
Q ss_pred hhhcccchhHHHHHHhhHHhhhchhhhccCCCCceEEEEEEecChHHHHHHHHhhhhcCCcccccchHHHHHhhhhhHHH
Q 001337 800 VKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQA 879 (1097)
Q Consensus 800 ~~~~~~r~~~L~~~L~~fvlRr~~~~v~~~LP~k~e~vv~v~Ls~~Q~~lY~~il~~~~~~~~~~~~~~~~~~~l~~l~~ 879 (1097)
.-|-.....+.. .+
T Consensus 198 -----------------------------~rp~~l~~~~~~--~~----------------------------------- 211 (720)
T 2zj8_A 198 -----------------------------WRPVKLRRGVFY--QG----------------------------------- 211 (720)
T ss_dssp -----------------------------CCSSEEEEEEEE--TT-----------------------------------
T ss_pred -----------------------------CCCCcceEEEEe--CC-----------------------------------
Confidence 000000000000 00
Q ss_pred HHHHhcCcceeeecccCCCCCccccccCCCCCCCccceeeccCcCCccccccccCCCCccchhhhhhhhhcccccccccC
Q 001337 880 LAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYS 959 (1097)
Q Consensus 880 Lrqi~~hP~Ll~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S 959 (1097)
.+.. .. . . . ....
T Consensus 212 --------~~~~-~~--~-~-------------------------------------~------------------~~~~ 224 (720)
T 2zj8_A 212 --------FVTW-ED--G-S-------------------------------------I------------------DRFS 224 (720)
T ss_dssp --------EEEE-TT--S-C-------------------------------------E------------------EECS
T ss_pred --------eeec-cc--c-c-------------------------------------h------------------hhhh
Confidence 0000 00 0 0 0 0001
Q ss_pred cceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCC-----------cc----------cccCCceeec
Q 001337 960 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQG-----------KL----------WKKGKDWYRL 1018 (1097)
Q Consensus 960 ~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~-----------~~----------~~~Gi~~~ri 1018 (1097)
.++..+.+++ ..+.++|||+........+...|.......... .. ..-...+..+
T Consensus 225 ~~~~~~~~~~----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~ 300 (720)
T 2zj8_A 225 SWEELVYDAI----RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFH 300 (720)
T ss_dssp STTHHHHHHH----HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEE
T ss_pred HHHHHHHHHH----hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeee
Confidence 1222333333 457899999999988888888776420000000 00 0001247889
Q ss_pred cCCccchHHHHHHHhhcccccceeeEEEeeeccccccceecccceEEE----Ec----CCcCCcccHHHHHHHhhhcccc
Q 001337 1019 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVII----VD----GSWNPTYDLQAIYRAWRCMDKQ 1090 (1097)
Q Consensus 1019 dGsts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg~GLNL~~An~VIi----~D----~~WNP~~~~QAiGRa~RiGQkK 1090 (1097)
+|+++.++|..+.+.|.+ +.++ +|++|.+++.|||+++.+.||. || .++++....|++||++|.|+.+
T Consensus 301 h~~l~~~~R~~v~~~f~~---g~~~-vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~ 376 (720)
T 2zj8_A 301 HAGLGRDERVLVEENFRK---GIIK-AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDE 376 (720)
T ss_dssp CTTSCHHHHHHHHHHHHT---TSSC-EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCS
T ss_pred cCCCCHHHHHHHHHHHHC---CCCe-EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCC
Confidence 999999999999999997 3444 4889999999999999999887 77 6889999999999999999765
Q ss_pred c
Q 001337 1091 S 1091 (1097)
Q Consensus 1091 ~ 1091 (1097)
+
T Consensus 377 ~ 377 (720)
T 2zj8_A 377 V 377 (720)
T ss_dssp E
T ss_pred C
Confidence 5
No 47
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.70 E-value=2.2e-17 Score=212.52 Aligned_cols=150 Identities=12% Similarity=0.164 Sum_probs=101.9
Q ss_pred ccccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecc-hhhhhh
Q 001337 562 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHN 640 (1097)
Q Consensus 562 l~~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P-~sLv~q 640 (1097)
+...|.|+|.+++..+. .+..+|++.++|.|||+.++..+...... .+.+||++| ..|+.|
T Consensus 36 ~~f~l~~~Q~~aI~~il--------------~g~~vlv~apTGsGKTlv~~~~i~~~~~~----g~~vlvl~PtraLa~Q 97 (997)
T 4a4z_A 36 WPFELDTFQKEAVYHLE--------------QGDSVFVAAHTSAGKTVVAEYAIAMAHRN----MTKTIYTSPIKALSNQ 97 (997)
T ss_dssp CSSCCCHHHHHHHHHHH--------------TTCEEEEECCTTSCSHHHHHHHHHHHHHT----TCEEEEEESCGGGHHH
T ss_pred CCCCCCHHHHHHHHHHH--------------cCCCEEEEECCCCcHHHHHHHHHHHHHhc----CCeEEEEeCCHHHHHH
Confidence 34568999999887653 35678999999999998665555544332 357999999 558899
Q ss_pred hHHhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEE
Q 001337 641 WKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 720 (1097)
Q Consensus 641 W~~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVI 720 (1097)
|.+++.++++. +.+..+.+..... ...+++|+|++.+.+..... ......+++||
T Consensus 98 ~~~~l~~~~~~----~~v~~l~G~~~~~---------~~~~IlV~Tpe~L~~~l~~~------------~~~l~~l~lvV 152 (997)
T 4a4z_A 98 KFRDFKETFDD----VNIGLITGDVQIN---------PDANCLIMTTEILRSMLYRG------------ADLIRDVEFVI 152 (997)
T ss_dssp HHHHHHTTC------CCEEEECSSCEEC---------TTSSEEEEEHHHHHHHHHHT------------CSGGGGEEEEE
T ss_pred HHHHHHHHcCC----CeEEEEeCCCccC---------CCCCEEEECHHHHHHHHHhC------------chhhcCCCEEE
Confidence 99999998764 5566665543221 34689999999875422110 01123678999
Q ss_pred ecccchhcccc--hhHHHHHhhhc-cceeeeeccCcc
Q 001337 721 CDEAHMIKNTR--ADTTQALKQVK-CQRRIALTGSPL 754 (1097)
Q Consensus 721 iDEAH~iKN~~--S~~~kal~~l~-a~~RllLTGTPi 754 (1097)
+||||++.+.. ......+..+. ..+.++|||||-
T Consensus 153 iDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~ 189 (997)
T 4a4z_A 153 FDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVP 189 (997)
T ss_dssp ECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCT
T ss_pred EECcccccccchHHHHHHHHHhcccCCCEEEEcCCCC
Confidence 99999986542 33344455553 467799999974
No 48
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.67 E-value=2.6e-16 Score=204.28 Aligned_cols=158 Identities=11% Similarity=0.137 Sum_probs=103.9
Q ss_pred cccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchh-hhhhhHH
Q 001337 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 643 (1097)
Q Consensus 565 ~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~s-Lv~qW~~ 643 (1097)
.+.|+|.+++..++ .+...|+...+|.|||+.++..+..... ....+|||+|.. |+.|+.+
T Consensus 78 ~pt~iQ~~ai~~il--------------~g~dvlv~ApTGSGKTl~~l~~il~~~~----~~~~~Lil~PtreLa~Q~~~ 139 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIV--------------QGKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQTLE 139 (1104)
T ss_dssp CCCHHHHHHHHHHT--------------TTCCEEECCSTTCCHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--------------cCCCEEEEeCCCCcHHHHHHHHHHHHHh----cCCeEEEEechHHHHHHHHH
Confidence 47799999887663 3567899999999999955555444432 235799999955 8889999
Q ss_pred hhcccccCCCcccEEEeecccch-hHHHHHHHHHHhc-CcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEe
Q 001337 644 EFMKWRPSELKPLRVFMLEDVSR-DRRAELLAKWRAK-GGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 721 (1097)
Q Consensus 644 Ei~k~~p~~~~~l~V~~~~~~~~-~~r~~~l~~~~~~-~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIi 721 (1097)
++.++.. ..+++..+++... ..+...+..+... .+|+|+|++.+.... ..+....+++||+
T Consensus 140 ~l~~l~~---~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l--------------~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 140 RLQKLAD---EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNR--------------EKLSQKRFDFVFV 202 (1104)
T ss_dssp HHHTTSC---TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSH--------------HHHHTSCCSEEEE
T ss_pred HHHHhhC---CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHH--------------HhhcccCcCEEEE
Confidence 9999762 2356666665443 3334444444444 789999998874311 1122348999999
Q ss_pred cccchhcccc-------------hh-HHHHHhhh------------ccceeeeeccCccccc
Q 001337 722 DEAHMIKNTR-------------AD-TTQALKQV------------KCQRRIALTGSPLQNN 757 (1097)
Q Consensus 722 DEAH~iKN~~-------------S~-~~kal~~l------------~a~~RllLTGTPiqNn 757 (1097)
||||.+.... .. +..++..+ .....+++||||....
T Consensus 203 DEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~ 264 (1104)
T 4ddu_A 203 DDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRG 264 (1104)
T ss_dssp SCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCS
T ss_pred eCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHH
Confidence 9999864321 11 23333333 2356789999976544
No 49
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.64 E-value=4.6e-17 Score=180.92 Aligned_cols=165 Identities=12% Similarity=0.135 Sum_probs=118.3
Q ss_pred ccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch-hhhhhhH
Q 001337 564 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWK 642 (1097)
Q Consensus 564 ~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~-sLv~qW~ 642 (1097)
..|+|||.+++.+++. +..+||+++||+|||+++++++...+.. +.+++|||||. .|+.||.
T Consensus 112 ~~l~~~Q~~ai~~~l~--------------~~~~ll~~~tGsGKT~~~~~~~~~~~~~---~~~~~lil~Pt~~L~~q~~ 174 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV--------------NRRRILNLPTSAGRSLIQALLARYYLEN---YEGKILIIVPTTALTTQMA 174 (282)
T ss_dssp CCCCHHHHHHHHHHHH--------------HSEEEECCCTTSCHHHHHHHHHHHHHHH---CSSEEEEECSSHHHHHHHH
T ss_pred cCccHHHHHHHHHHHh--------------cCCeEEEcCCCCCcHHHHHHHHHHHHHc---CCCeEEEEECCHHHHHHHH
Confidence 4799999999998754 2456899999999999998887766543 23489999996 6899999
Q ss_pred HhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEec
Q 001337 643 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 722 (1097)
Q Consensus 643 ~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiD 722 (1097)
+++.+|... ....+..+.+...... ......+|+|+||+++.... ......+++||+|
T Consensus 175 ~~l~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~I~v~T~~~l~~~~---------------~~~~~~~~~vIiD 232 (282)
T 1rif_A 175 DDFVDYRLF--SHAMIKKIGGGASKDD-----KYKNDAPVVVGTWQTVVKQP---------------KEWFSQFGMMMND 232 (282)
T ss_dssp HHHHHHTSC--CGGGEEECSTTCSSTT-----CCCTTCSEEEECHHHHTTSC---------------GGGGGGEEEEEEE
T ss_pred HHHHHhccc--ccceEEEEeCCCcchh-----hhccCCcEEEEchHHHHhhH---------------HHHHhhCCEEEEE
Confidence 999998643 1233444333221111 11245689999999875321 0112367999999
Q ss_pred ccchhcccchhHHHHHhhh-ccceeeeeccCccccchhhhhhhhhhhhh
Q 001337 723 EAHMIKNTRADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVRE 770 (1097)
Q Consensus 723 EAH~iKN~~S~~~kal~~l-~a~~RllLTGTPiqNnl~El~~Ll~fL~p 770 (1097)
|||++.+. .....+..+ ...++++|||||. |...+++.++.++.|
T Consensus 233 EaH~~~~~--~~~~il~~~~~~~~~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 233 ECHLATGK--SISSIISGLNNCMFKFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp TGGGCCHH--HHHHHTTTCTTCCEEEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred CCccCCcc--cHHHHHHHhhcCCeEEEEeCCCC-CcchHHHHHHHhcCC
Confidence 99999864 455566666 6889999999995 556788888888765
No 50
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.59 E-value=1.1e-15 Score=157.45 Aligned_cols=121 Identities=17% Similarity=0.150 Sum_probs=108.3
Q ss_pred ccCcceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcc
Q 001337 957 DYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 1036 (1097)
Q Consensus 957 ~~S~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~ 1036 (1097)
..+.|+..|.++|... .+.|+|||+++...++.+...|.. .|+.+..++|+++..+|..+++.|++
T Consensus 14 ~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~------------~~~~~~~~hg~~~~~~r~~~~~~f~~ 79 (172)
T 1t5i_A 14 KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVE------------QNFPAIAIHRGMPQEERLSRYQQFKD 79 (172)
T ss_dssp CGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHH------------TTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHh------------cCCCEEEEECCCCHHHHHHHHHHHHC
Confidence 4467999999999865 468999999999999999999985 58889999999999999999999997
Q ss_pred cccceeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhccccccccc
Q 001337 1037 PLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1037 ~~n~~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
+.++ +|++|.++++|||++.+++||+||+|||+..+.|++||++|.||...++++
T Consensus 80 ---g~~~-vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~ 134 (172)
T 1t5i_A 80 ---FQRR-ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 134 (172)
T ss_dssp ---TSCS-EEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEE
T ss_pred ---CCCc-EEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEE
Confidence 3344 478889999999999999999999999999999999999999998776654
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.58 E-value=2.8e-15 Score=176.77 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=83.4
Q ss_pred CCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccceeeEEEeeecccccc
Q 001337 976 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 1055 (1097)
Q Consensus 976 geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg~G 1055 (1097)
+.++|||+......+.+...|.. .|+.+..++|. +|.++++.|.+ +.++ +|++|.+.+.|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~------------~~~~v~~lhg~----~r~~~~~~f~~---g~~~-vLVaT~v~e~G 230 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQK------------AGKKVLYLNRK----TFESEYPKCKS---EKWD-FVITTDISEMG 230 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHH------------TTCCEEEESTT----THHHHTTHHHH---SCCS-EEEECGGGGTS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHH------------cCCeEEEeCCc----cHHHHHHhhcC---CCCe-EEEECchHHcC
Confidence 56899999999999999999986 37889999986 68889999987 3443 58999999999
Q ss_pred ceecccce----------------EEEEcCCcCCcccHHHHHHHhhhcccc-ccccc
Q 001337 1056 INLHSANR----------------VIIVDGSWNPTYDLQAIYRAWRCMDKQ-SQFLL 1095 (1097)
Q Consensus 1056 LNL~~An~----------------VIi~D~~WNP~~~~QAiGRa~RiGQkK-~V~VY 1095 (1097)
||++.++. ||+++.+.++....|++||++|.|... .+++|
T Consensus 231 iDip~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 231 ANFKADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp CCCCCSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred cccCCcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 99984332 678889999999999999999999544 45665
No 52
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.58 E-value=4.5e-15 Score=192.62 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=65.6
Q ss_pred cceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhccccc
Q 001337 960 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1039 (1097)
Q Consensus 960 ~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n 1039 (1097)
.|...|.+++... +.++|||+.....++.+...|.. . +.+..++|.+ .++++.|.+
T Consensus 262 ~k~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~------------~-~~v~~lhg~~-----~~~l~~F~~--- 317 (1054)
T 1gku_B 262 ESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKN------------K-FRIGIVTATK-----KGDYEKFVE--- 317 (1054)
T ss_dssp CCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTT------------S-SCEEECTTSS-----SHHHHHHHH---
T ss_pred hHHHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhh------------c-cCeeEEeccH-----HHHHHHHHc---
Confidence 3555666777654 57899999999999999999985 2 6788899986 478899997
Q ss_pred ceeeEEEee---eccccccceeccc-ceEEEEcCC
Q 001337 1040 KRVKCTLIS---TRAGSLGINLHSA-NRVIIVDGS 1070 (1097)
Q Consensus 1040 ~~v~VlLiS---tkagg~GLNL~~A-n~VIi~D~~ 1070 (1097)
+.++|++.+ |.++++|||++++ ++||+++++
T Consensus 318 G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 318 GEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp TSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred CCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 455655554 8999999999995 999999999
No 53
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.56 E-value=1.2e-15 Score=155.56 Aligned_cols=121 Identities=18% Similarity=0.236 Sum_probs=108.5
Q ss_pred ccCcceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcc
Q 001337 957 DYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 1036 (1097)
Q Consensus 957 ~~S~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~ 1036 (1097)
..+.|+..|.++|... .+.|+|||+++...++.+...|.. .|+.+..++|+++..+|..+++.|++
T Consensus 18 ~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~------------~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 18 REENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDD------------LGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp CGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHH------------TTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHH------------cCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 4467999999999864 467999999999999999999985 58899999999999999999999997
Q ss_pred cccceeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhccccccccc
Q 001337 1037 PLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1037 ~~n~~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
+ .++ +|++|+++++|+|++.+++||+||+||++....|++||++|.||...+++|
T Consensus 84 g---~~~-vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~ 138 (163)
T 2hjv_A 84 G---EYR-YLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISF 138 (163)
T ss_dssp T---SCS-EEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEE
T ss_pred C---CCe-EEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEE
Confidence 3 344 578999999999999999999999999999999999999999998877665
No 54
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.55 E-value=3.9e-15 Score=161.47 Aligned_cols=141 Identities=17% Similarity=0.154 Sum_probs=102.8
Q ss_pred ccccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch-hhhhh
Q 001337 562 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHN 640 (1097)
Q Consensus 562 l~~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~-sLv~q 640 (1097)
....|+|||.+++..+++ +..+||+.+||+|||+++++++... .+++|||||. .|+.|
T Consensus 90 ~~~~l~~~Q~~ai~~~~~--------------~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~liv~P~~~L~~q 148 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLV--------------DKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQ 148 (237)
T ss_dssp CCCCCCHHHHHHHHHHTT--------------TSEEEEEESSSTTHHHHHHHHHHHS-------CSCEEEEESSHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHh--------------CCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEeCCHHHHHH
Confidence 346899999999986632 2358999999999999988877653 3589999997 78899
Q ss_pred hHHhhcccccCCCcccE-EEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEE
Q 001337 641 WKQEFMKWRPSELKPLR-VFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDIL 719 (1097)
Q Consensus 641 W~~Ei~k~~p~~~~~l~-V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlV 719 (1097)
|.+++.+| + +. +..+.+... ...+++|+||+.+... . ..+...|++|
T Consensus 149 ~~~~~~~~-~-----~~~v~~~~g~~~-----------~~~~i~v~T~~~l~~~--------------~-~~~~~~~~ll 196 (237)
T 2fz4_A 149 WKERLGIF-G-----EEYVGEFSGRIK-----------ELKPLTVSTYDSAYVN--------------A-EKLGNRFMLL 196 (237)
T ss_dssp HHHHHGGG-C-----GGGEEEESSSCB-----------CCCSEEEEEHHHHHHT--------------H-HHHTTTCSEE
T ss_pred HHHHHHhC-C-----CCeEEEEeCCCC-----------CcCCEEEEeHHHHHhh--------------H-HHhcccCCEE
Confidence 99999984 2 34 555555432 2458999999886431 1 1223469999
Q ss_pred EecccchhcccchhHHHHHhhhccceeeeeccCccccc
Q 001337 720 VCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNN 757 (1097)
Q Consensus 720 IiDEAH~iKN~~S~~~kal~~l~a~~RllLTGTPiqNn 757 (1097)
||||||++.+.. ..+.+..+...++++|||||.+++
T Consensus 197 IiDEaH~l~~~~--~~~i~~~~~~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 197 IFDEVHHLPAES--YVQIAQMSIAPFRLGLTATFERED 232 (237)
T ss_dssp EEECSSCCCTTT--HHHHHHTCCCSEEEEEEESCC---
T ss_pred EEECCccCCChH--HHHHHHhccCCEEEEEecCCCCCC
Confidence 999999997653 334555668889999999998765
No 55
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.54 E-value=1.2e-15 Score=159.02 Aligned_cols=122 Identities=20% Similarity=0.273 Sum_probs=94.9
Q ss_pred ccCcceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcc
Q 001337 957 DYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 1036 (1097)
Q Consensus 957 ~~S~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~ 1036 (1097)
..+.|+..|.++|.... .+.|+|||+++...++.|...|.. .|+.+..++|+++..+|..+++.|++
T Consensus 28 ~~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~~------------~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 28 EESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYH------------EGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp CGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHH------------TTCCEEEEC--------CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHH------------cCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 45679999999998753 578999999999999999999985 58899999999999999999999997
Q ss_pred cccceeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhccccccccc
Q 001337 1037 PLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1037 ~~n~~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
+ .++ +|++|+++++|||++.++.||+||+|||+....|++||++|.||+..++++
T Consensus 95 g---~~~-vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 149 (185)
T 2jgn_A 95 G---KSP-ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 149 (185)
T ss_dssp T---SSS-EEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEE
T ss_pred C---CCe-EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEE
Confidence 3 344 578999999999999999999999999999999999999999998776654
No 56
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.52 E-value=3.2e-14 Score=168.14 Aligned_cols=99 Identities=18% Similarity=0.165 Sum_probs=77.6
Q ss_pred CCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccceeeEEEeeecccccc
Q 001337 976 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 1055 (1097)
Q Consensus 976 geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg~G 1055 (1097)
+.++|||+.....++.+...|.. .|+.+..++| ++|.++++.|.+ +.++ +|++|.+.+.|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~------------~~~~v~~lhg----~~R~~~~~~F~~---g~~~-vLVaT~v~e~G 236 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRK------------AGKSVVVLNR----KTFEREYPTIKQ---KKPD-FILATDIAEMG 236 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH------------TTCCEEECCS----SSCC-----------CCCS-EEEESSSTTCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHH------------cCCCEEEecc----hhHHHHHhhhcC---CCce-EEEECChhhee
Confidence 67999999999999999999986 4788999999 478899999997 3443 58899999999
Q ss_pred ceecccceEEE-------------------EcCCcCCcccHHHHHHHhhhc-cccccccc
Q 001337 1056 INLHSANRVII-------------------VDGSWNPTYDLQAIYRAWRCM-DKQSQFLL 1095 (1097)
Q Consensus 1056 LNL~~An~VIi-------------------~D~~WNP~~~~QAiGRa~RiG-QkK~V~VY 1095 (1097)
||++ +++||+ ++.+.++....|++||++|.| +.-.+++|
T Consensus 237 iDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l 295 (440)
T 1yks_A 237 ANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYY 295 (440)
T ss_dssp TTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred eccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEE
Confidence 9999 999985 899999999999999999984 55455554
No 57
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.51 E-value=9.7e-15 Score=173.18 Aligned_cols=100 Identities=22% Similarity=0.206 Sum_probs=84.2
Q ss_pred CCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccceeeEEEeeecccccc
Q 001337 976 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 1055 (1097)
Q Consensus 976 geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg~G 1055 (1097)
+.++|||++.....+.+...|.. .|+.+..++|.+ ++++++.|.+ +.++ +|++|.+++.|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~------------~g~~~~~lh~~~----~~~~~~~f~~---g~~~-vLVaT~v~~~G 247 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRK------------SGKRVIQLSRKT----FDTEYPKTKL---TDWD-FVVTTDISEMG 247 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHT------------TTCCEEEECTTT----HHHHGGGGGS---SCCS-EEEECGGGGSS
T ss_pred CCCEEEEcCCHHHHHHHHHHHHH------------cCCeEEECCHHH----HHHHHHhhcc---CCce-EEEECCHHHhC
Confidence 46899999999999999999985 478888898864 4678999986 3443 58999999999
Q ss_pred ceecccceEEEEc--------------------CCcCCcccHHHHHHHhhhcc-cccccccc
Q 001337 1056 INLHSANRVIIVD--------------------GSWNPTYDLQAIYRAWRCMD-KQSQFLLT 1096 (1097)
Q Consensus 1056 LNL~~An~VIi~D--------------------~~WNP~~~~QAiGRa~RiGQ-kK~V~VYr 1096 (1097)
||++. +.||.++ ++.++....|++||++|.|. ...+++|.
T Consensus 248 iDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~ 308 (451)
T 2jlq_A 248 ANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFS 308 (451)
T ss_dssp CCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred cCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEe
Confidence 99999 9999988 88889999999999999997 44455553
No 58
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.26 E-value=1.3e-15 Score=156.52 Aligned_cols=119 Identities=24% Similarity=0.325 Sum_probs=106.9
Q ss_pred CcceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccc
Q 001337 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1038 (1097)
Q Consensus 959 S~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~ 1038 (1097)
+.|+.+|.+++... .+.|+|||+++...++.+...|.. .|+.+..++|+++..+|..+++.|++
T Consensus 15 ~~k~~~l~~ll~~~--~~~~~iVF~~~~~~~~~l~~~L~~------------~~~~~~~~~g~~~~~~r~~~~~~f~~-- 78 (170)
T 2yjt_D 15 EHKTALLVHLLKQP--EATRSIVFVRKRERVHELANWLRE------------AGINNCYLEGEMVQGKRNEAIKRLTE-- 78 (170)
Confidence 67999999998763 468999999999999999999985 47889999999999999999999997
Q ss_pred cceeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhccccccccc
Q 001337 1039 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1039 n~~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
+.++ +|++|.++++|||++.+++||+||++|++....|++||++|.||...++++
T Consensus 79 -g~~~-vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~ 133 (170)
T 2yjt_D 79 -GRVN-VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISL 133 (170)
Confidence 3444 588899999999999999999999999999999999999999998877665
No 59
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.51 E-value=4.2e-15 Score=151.80 Aligned_cols=117 Identities=19% Similarity=0.168 Sum_probs=101.2
Q ss_pred ceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccc
Q 001337 961 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 1040 (1097)
Q Consensus 961 Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~ 1040 (1097)
|+..|.+++... .+.|+|||+++...++.+...|.. .|+.+..++|+++..+|..+++.|+++
T Consensus 17 K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~------------~~~~~~~~~~~~~~~~r~~~~~~f~~g--- 79 (165)
T 1fuk_A 17 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRN------------DKFTVSAIYSDLPQQERDTIMKEFRSG--- 79 (165)
T ss_dssp HHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHH------------TTCCEEEECTTSCHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHH------------cCCCEEEEECCCCHHHHHHHHHHHHcC---
Confidence 999999999875 468999999999999999999985 578899999999999999999999973
Q ss_pred eeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhccccccccc
Q 001337 1041 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1041 ~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
.++ +|++|.++++|+|++.+++||+||++|++....|++||++|.||...++++
T Consensus 80 ~~~-vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~ 133 (165)
T 1fuk_A 80 SSR-ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINF 133 (165)
T ss_dssp SCS-EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEE
T ss_pred CCE-EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEE
Confidence 343 578899999999999999999999999999999999999999988777655
No 60
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.51 E-value=3.6e-15 Score=156.35 Aligned_cols=120 Identities=25% Similarity=0.297 Sum_probs=103.4
Q ss_pred ccCcceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcc
Q 001337 957 DYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 1036 (1097)
Q Consensus 957 ~~S~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~ 1036 (1097)
..+.|+..|.++|.. .+.|+|||+++...++.+...|.. .|+.+..++|+++..+|.++++.|++
T Consensus 38 ~~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~------------~g~~~~~lhg~~~~~~R~~~l~~F~~ 102 (191)
T 2p6n_A 38 KEEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLL------------KGVEAVAIHGGKDQEERTKAIEAFRE 102 (191)
T ss_dssp CGGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHH------------HTCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHH------------cCCcEEEEeCCCCHHHHHHHHHHHhc
Confidence 345788888888875 357999999999999999999985 58899999999999999999999997
Q ss_pred cccceeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhccccccccc
Q 001337 1037 PLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1037 ~~n~~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
+ .++ +|++|.++++|||++.+++||+||++||+..+.|++||++|.||+..++++
T Consensus 103 g---~~~-vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l 157 (191)
T 2p6n_A 103 G---KKD-VLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTF 157 (191)
T ss_dssp T---SCS-EEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEE
T ss_pred C---CCE-EEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEE
Confidence 3 344 588899999999999999999999999999999999999999998766554
No 61
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.50 E-value=2e-14 Score=170.84 Aligned_cols=99 Identities=18% Similarity=0.201 Sum_probs=81.4
Q ss_pred CCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccceeeEEEeeecccccc
Q 001337 976 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 1055 (1097)
Q Consensus 976 geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg~G 1055 (1097)
+.++|||+.....++.+...|.. .|+.+..++|. +|.++++.|.+ +..+ +|++|.+++.|
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~------------~g~~v~~lh~~----~R~~~~~~f~~---g~~~-iLVaT~v~~~G 249 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQR------------AGKKVIQLNRK----SYDTEYPKCKN---GDWD-FVITTDISEMG 249 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH------------TTCCEEEESTT----CCCCCGGGSSS---CCCS-EEEESSCC---
T ss_pred CCCEEEEeCChHHHHHHHHHHHh------------cCCcEEecCHH----HHHHHHhhccC---CCce-EEEECChHHhC
Confidence 67999999999999999999986 47888899984 78889999987 3443 58999999999
Q ss_pred ceecccceEEE--------------------EcCCcCCcccHHHHHHHhhhcc-ccccccc
Q 001337 1056 INLHSANRVII--------------------VDGSWNPTYDLQAIYRAWRCMD-KQSQFLL 1095 (1097)
Q Consensus 1056 LNL~~An~VIi--------------------~D~~WNP~~~~QAiGRa~RiGQ-kK~V~VY 1095 (1097)
||++. +.||. ||+|.++....|++||++|.|. .-.+++|
T Consensus 250 iDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~ 309 (459)
T 2z83_A 250 ANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHY 309 (459)
T ss_dssp CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred eecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEE
Confidence 99999 99988 7899999999999999999996 4344443
No 62
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.50 E-value=3.5e-14 Score=175.50 Aligned_cols=100 Identities=20% Similarity=0.203 Sum_probs=84.6
Q ss_pred CCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccceeeEEEeeeccccc
Q 001337 975 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 1054 (1097)
Q Consensus 975 ~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg~ 1054 (1097)
.+.++|||+......+.+...|.. .|+.+..++| ++|.++++.|.+ +.++ +|++|.+++.
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~------------~g~~v~~lHg----~eR~~v~~~F~~---g~~~-VLVaTdv~e~ 468 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQR------------AGKRVIQLNR----KSYDTEYPKCKN---GDWD-FVITTDISEM 468 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHT------------TTCCEEEECS----SSHHHHGGGGGT---CCCS-EEEECGGGGT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHh------------CCCeEEEeCh----HHHHHHHHHHHC---CCce-EEEECchhhc
Confidence 478999999999999999999985 4788999999 389999999987 3443 5889999999
Q ss_pred cceecccceEEE--------------------EcCCcCCcccHHHHHHHhhh-ccccccccc
Q 001337 1055 GINLHSANRVII--------------------VDGSWNPTYDLQAIYRAWRC-MDKQSQFLL 1095 (1097)
Q Consensus 1055 GLNL~~An~VIi--------------------~D~~WNP~~~~QAiGRa~Ri-GQkK~V~VY 1095 (1097)
|||++ +++||+ ||+|.++....|++||++|. |+.-.+++|
T Consensus 469 GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l 529 (673)
T 2wv9_A 469 GANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHY 529 (673)
T ss_dssp TCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEE
T ss_pred ceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEE
Confidence 99999 999997 56778888999999999999 555455554
No 63
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.46 E-value=9.1e-14 Score=170.57 Aligned_cols=93 Identities=22% Similarity=0.166 Sum_probs=79.6
Q ss_pred CCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccceeeEEEeeecccccc
Q 001337 976 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 1055 (1097)
Q Consensus 976 geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg~G 1055 (1097)
+.++|||+......+.+...|.. .|+.+..++|. +|.++++.|.+ +..+ +|++|.+++.|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~------------~g~~v~~lhg~----~R~~~l~~F~~---g~~~-VLVaTdv~~rG 414 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRK------------SGKRVIQLSRK----TFDTEYPKTKL---TDWD-FVVTTDISEMG 414 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHH------------TTCCEEEECTT----THHHHTTHHHH---SCCS-EEEECGGGGTT
T ss_pred CCCEEEEECChhHHHHHHHHHHH------------cCCcEEEEChH----HHHHHHHhhcC---CCcE-EEEECcHHHcC
Confidence 57999999999999999999986 47889999984 78899999987 3333 58999999999
Q ss_pred ceecccceE--------------------EEEcCCcCCcccHHHHHHHhhhccc
Q 001337 1056 INLHSANRV--------------------IIVDGSWNPTYDLQAIYRAWRCMDK 1089 (1097)
Q Consensus 1056 LNL~~An~V--------------------Ii~D~~WNP~~~~QAiGRa~RiGQk 1089 (1097)
||+. +++| |++|+|-++....|++||+.|.|..
T Consensus 415 iDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~ 467 (618)
T 2whx_A 415 ANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ 467 (618)
T ss_dssp CCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred cccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCC
Confidence 9996 8888 6677777778899999999999863
No 64
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=3.1e-14 Score=146.80 Aligned_cols=118 Identities=21% Similarity=0.266 Sum_probs=98.9
Q ss_pred cceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhccccc
Q 001337 960 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1039 (1097)
Q Consensus 960 ~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n 1039 (1097)
.|+.+|.+++... .+.|+|||+++...++.+...|.. .|+.+..++|+++..+|..+++.|+++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~------------~~~~~~~~~g~~~~~~R~~~~~~f~~g-- 83 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQ------------DGHQVSLLSGELTVEQRASIIQRFRDG-- 83 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHT------------TTCCEEEECSSCCHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHH------------cCCcEEEEeCCCCHHHHHHHHHHHHcC--
Confidence 4888999998865 367999999999999999999985 578899999999999999999999973
Q ss_pred ceeeEEEeeeccccccceecccceEEEEcCCc------CCcccHHHHHHHhhhccccccccc
Q 001337 1040 KRVKCTLISTRAGSLGINLHSANRVIIVDGSW------NPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1040 ~~v~VlLiStkagg~GLNL~~An~VIi~D~~W------NP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
.++ +|++|.+++.|||++.+++||+||+|| ++....|++||++|.|+.-.++++
T Consensus 84 -~~~-vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~ 143 (175)
T 2rb4_A 84 -KEK-VLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNM 143 (175)
T ss_dssp -SCS-EEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEE
T ss_pred -CCe-EEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEE
Confidence 344 588899999999999999999999995 556788999999999987665543
No 65
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.40 E-value=1.1e-13 Score=147.43 Aligned_cols=121 Identities=20% Similarity=0.267 Sum_probs=106.0
Q ss_pred ccCcceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcc
Q 001337 957 DYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 1036 (1097)
Q Consensus 957 ~~S~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~ 1036 (1097)
..+.|+.+|.+++... .+.++|||+.+...++.+...|.. .|+.+..++|+++..+|..+++.|++
T Consensus 14 ~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~------------~~~~~~~lhg~~~~~~r~~~~~~f~~ 79 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLR------------LGHPAQALHGDLSQGERERVLGAFRQ 79 (212)
T ss_dssp CTTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHH------------HTCCEEEECSSSCHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHH------------cCCCEEEEECCCCHHHHHHHHHHHHC
Confidence 3467999999999854 368999999999999999999985 58899999999999999999999997
Q ss_pred cccceeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhccccccccc
Q 001337 1037 PLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1037 ~~n~~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
+.++ +|++|.++++|||++.+++||++|++|++....|++||++|.|+...++++
T Consensus 80 ---g~~~-vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l 134 (212)
T 3eaq_A 80 ---GEVR-VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLL 134 (212)
T ss_dssp ---SSCC-EEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEE
T ss_pred ---CCCe-EEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEE
Confidence 3444 488999999999999999999999999999999999999999988766554
No 66
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.39 E-value=1.3e-12 Score=161.28 Aligned_cols=97 Identities=22% Similarity=0.252 Sum_probs=84.2
Q ss_pred ceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccceeeEEEeeeccccccce
Q 001337 978 KSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGIN 1057 (1097)
Q Consensus 978 KVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg~GLN 1057 (1097)
..|||+.....++.+...|.. .|+.+..++|+++.++|..+++.|++++ +.++ +|++|.+++.|||
T Consensus 322 g~iIf~~s~~~ie~la~~L~~------------~g~~v~~lHG~L~~~~R~~~~~~F~~~~-g~~~-VLVATdi~e~GlD 387 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEI------------RGLESAVIYGSLPPGTKLAQAKKFNDPN-DPCK-ILVATDAIGMGLN 387 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHH------------TTCCCEEECTTSCHHHHHHHHHHHHCTT-SSCC-EEEECGGGGSSCC
T ss_pred CCEEEEcCHHHHHHHHHHHHh------------cCCCeeeeeccCCHHHHHHHHHHHHccC-CCeE-EEEeCcHHHCCcC
Confidence 347777778888999999985 4788999999999999999999999732 3343 5889999999999
Q ss_pred ecccceEEEEcC--------------CcCCcccHHHHHHHhhhccc
Q 001337 1058 LHSANRVIIVDG--------------SWNPTYDLQAIYRAWRCMDK 1089 (1097)
Q Consensus 1058 L~~An~VIi~D~--------------~WNP~~~~QAiGRa~RiGQk 1089 (1097)
+ .+++||++++ +++++...|++||++|.|+.
T Consensus 388 i-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~ 432 (677)
T 3rc3_A 388 L-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSR 432 (677)
T ss_dssp C-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSS
T ss_pred c-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCC
Confidence 9 9999999999 78899999999999999976
No 67
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.37 E-value=1.8e-13 Score=144.58 Aligned_cols=148 Identities=12% Similarity=0.114 Sum_probs=90.9
Q ss_pred cCccccccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhcc--ccceeeEeecch
Q 001337 558 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVN--LGLRTALIVTPV 635 (1097)
Q Consensus 558 vP~~l~~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~--~~~k~~LIV~P~ 635 (1097)
.+......|+|||.+++..++ .+..+|+..++|+|||++++.++...+.... ...+++|||||.
T Consensus 26 ~~~~~~~~l~~~Q~~~i~~~~--------------~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~ 91 (216)
T 3b6e_A 26 ASPEPELQLRPYQMEVAQPAL--------------EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNK 91 (216)
T ss_dssp TCCSCCCCCCHHHHHHHHHHH--------------TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESS
T ss_pred cCccCCCCchHHHHHHHHHHh--------------cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECH
Confidence 344455689999999998774 2467899999999999999888776654322 123589999997
Q ss_pred -hhhhh-hHHhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhc
Q 001337 636 -NVLHN-WKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 713 (1097)
Q Consensus 636 -sLv~q-W~~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~ 713 (1097)
.|+.| |.+++.+|.+.. +.+..+.+...... .........+|+|+||+.+.......... .......
T Consensus 92 ~~L~~q~~~~~~~~~~~~~---~~v~~~~g~~~~~~--~~~~~~~~~~i~v~T~~~l~~~~~~~~~~------~~~~~~~ 160 (216)
T 3b6e_A 92 VLLVEQLFRKEFQPFLKKW---YRVIGLSGDTQLKI--SFPEVVKSCDIIISTAQILENSLLNLENG------EDAGVQL 160 (216)
T ss_dssp HHHHHHHHHHTHHHHHTTT---SCEEECCC---CCC--CHHHHHHHCSEEEEEHHHHHHHHHC-------------CCCG
T ss_pred HHHHHHHHHHHHHHHhccC---ceEEEEeCCcccch--hHHhhccCCCEEEECHHHHHHHHhccCcc------cccccch
Confidence 57788 999999887642 45555554332110 01111245789999999875422111000 0000122
Q ss_pred cCCCEEEecccchhccc
Q 001337 714 DGPDILVCDEAHMIKNT 730 (1097)
Q Consensus 714 ~~~dlVIiDEAH~iKN~ 730 (1097)
..+++||+||||++...
T Consensus 161 ~~~~~iIiDEah~~~~~ 177 (216)
T 3b6e_A 161 SDFSLIIIDECHHTNKE 177 (216)
T ss_dssp GGCSEEEETTC------
T ss_pred hcccEEEEECchhhccC
Confidence 37899999999999643
No 68
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.36 E-value=1.7e-12 Score=160.13 Aligned_cols=114 Identities=21% Similarity=0.163 Sum_probs=98.2
Q ss_pred CcceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccc
Q 001337 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1038 (1097)
Q Consensus 959 S~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~ 1038 (1097)
..|+.+|++.|......+.++|||+.+....+.|...|.. .|+++..++|.+...+|..+..+|+.
T Consensus 415 ~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~------------~gi~~~vLhg~~~~rEr~ii~~ag~~-- 480 (844)
T 1tf5_A 415 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKN------------KGIPHQVLNAKNHEREAQIIEEAGQK-- 480 (844)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHT------------TTCCCEEECSSCHHHHHHHHTTTTST--
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH------------CCCCEEEeeCCccHHHHHHHHHcCCC--
Confidence 4588889998887666688999999999999999999985 68999999999876666545555654
Q ss_pred cceeeEEEeeeccccccceec--------ccceEEEEcCCcCCcccHHHHHHHhhhcccc
Q 001337 1039 NKRVKCTLISTRAGSLGINLH--------SANRVIIVDGSWNPTYDLQAIYRAWRCMDKQ 1090 (1097)
Q Consensus 1039 n~~v~VlLiStkagg~GLNL~--------~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK 1090 (1097)
+. ++|+|..+|.|+++. +..+||.+|.|-++..+.|++||++|.|..=
T Consensus 481 -g~---VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G 536 (844)
T 1tf5_A 481 -GA---VTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPG 536 (844)
T ss_dssp -TC---EEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCE
T ss_pred -Ce---EEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCC
Confidence 33 489999999999999 7889999999999999999999999999764
No 69
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.36 E-value=3.8e-13 Score=141.44 Aligned_cols=159 Identities=13% Similarity=0.075 Sum_probs=105.2
Q ss_pred ccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhc--cccceeeEeecch-hhhhh
Q 001337 564 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV--NLGLRTALIVTPV-NVLHN 640 (1097)
Q Consensus 564 ~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~--~~~~k~~LIV~P~-sLv~q 640 (1097)
..++|||.+++..++ .+..+++..++|.|||++++..+...+... .....++|||+|. .++.|
T Consensus 22 ~~~~~~Q~~~i~~~~--------------~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q 87 (207)
T 2gxq_A 22 TTPTPIQAAALPLAL--------------EGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQ 87 (207)
T ss_dssp CSCCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHHc--------------CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHH
Confidence 368999999998764 246789999999999988666555443221 1123579999997 78999
Q ss_pred hHHhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEE
Q 001337 641 WKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 720 (1097)
Q Consensus 641 W~~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVI 720 (1097)
|.+++.++.+. +.+..+.+...... .........+|+|+|++.+...... .......+++||
T Consensus 88 ~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~i~v~T~~~l~~~~~~------------~~~~~~~~~~iV 149 (207)
T 2gxq_A 88 VASELTAVAPH----LKVVAVYGGTGYGK--QKEALLRGADAVVATPGRALDYLRQ------------GVLDLSRVEVAV 149 (207)
T ss_dssp HHHHHHHHCTT----SCEEEECSSSCSHH--HHHHHHHCCSEEEECHHHHHHHHHH------------TSSCCTTCSEEE
T ss_pred HHHHHHHHhhc----ceEEEEECCCChHH--HHHHhhCCCCEEEECHHHHHHHHHc------------CCcchhhceEEE
Confidence 99999999875 45555544332211 1122335679999999887532110 011123789999
Q ss_pred ecccchhcccc--hhHHHHHhhhc-cceeeeeccCcc
Q 001337 721 CDEAHMIKNTR--ADTTQALKQVK-CQRRIALTGSPL 754 (1097)
Q Consensus 721 iDEAH~iKN~~--S~~~kal~~l~-a~~RllLTGTPi 754 (1097)
+||||++.... ..+...+..+. ..+.+++||||-
T Consensus 150 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 186 (207)
T 2gxq_A 150 LDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLP 186 (207)
T ss_dssp EESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCC
T ss_pred EEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecC
Confidence 99999986442 23333344443 456899999984
No 70
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.34 E-value=7.1e-13 Score=141.10 Aligned_cols=161 Identities=11% Similarity=0.081 Sum_probs=104.3
Q ss_pred cccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch-hhhhhhHH
Q 001337 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 643 (1097)
Q Consensus 565 ~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~-sLv~qW~~ 643 (1097)
.++|||.+++..++ .+..+|+..++|.|||+.++..+...+... .+..++|||||. .|+.||.+
T Consensus 36 ~~~~~Q~~~i~~~~--------------~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-~~~~~~lil~Pt~~L~~q~~~ 100 (220)
T 1t6n_A 36 HPSEVQHECIPQAI--------------LGMDVLCQAKSGMGKTAVFVLATLQQLEPV-TGQVSVLVMCHTRELAFQISK 100 (220)
T ss_dssp CCCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHHHCCCC-TTCCCEEEECSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--------------CCCCEEEECCCCCchhhhhhHHHHHhhhcc-CCCEEEEEEeCCHHHHHHHHH
Confidence 48999999998764 245689999999999988776665554322 123489999996 68899999
Q ss_pred hhcccccCCCcccEEEeecccchhHHHHHHHHHH-hcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEec
Q 001337 644 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWR-AKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 722 (1097)
Q Consensus 644 Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~-~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiD 722 (1097)
++.++.... ..+++..+.+...... ....+. ...+|+|+|++.+..+.... .+....+++||+|
T Consensus 101 ~~~~~~~~~-~~~~v~~~~g~~~~~~--~~~~~~~~~~~i~v~T~~~l~~~~~~~------------~~~~~~~~~lViD 165 (220)
T 1t6n_A 101 EYERFSKYM-PNVKVAVFFGGLSIKK--DEEVLKKNCPHIVVGTPGRILALARNK------------SLNLKHIKHFILD 165 (220)
T ss_dssp HHHHHTTTS-TTCCEEEESCCSCHHH--HHHHHHHSCCSEEEECHHHHHHHHHTT------------SSCCTTCCEEEEE
T ss_pred HHHHHHhhC-CCceEEEEeCCCChHH--HHHHHhcCCCCEEEeCHHHHHHHHHhC------------CCCcccCCEEEEc
Confidence 999886431 1356666655433221 112222 24589999999875422111 0112378999999
Q ss_pred ccchhcccc---hhHHHHHhhh-ccceeeeeccCccc
Q 001337 723 EAHMIKNTR---ADTTQALKQV-KCQRRIALTGSPLQ 755 (1097)
Q Consensus 723 EAH~iKN~~---S~~~kal~~l-~a~~RllLTGTPiq 755 (1097)
|||++.... ..+...+..+ ...+.++|||||-.
T Consensus 166 Eah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 202 (220)
T 1t6n_A 166 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK 202 (220)
T ss_dssp SHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCT
T ss_pred CHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCH
Confidence 999985421 2222233333 35678999999943
No 71
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.34 E-value=4.8e-12 Score=156.03 Aligned_cols=114 Identities=14% Similarity=0.080 Sum_probs=98.2
Q ss_pred CcceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccc
Q 001337 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1038 (1097)
Q Consensus 959 S~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~ 1038 (1097)
..|+.+|++.|......|.+||||+.+....+.|...|.. .|+++..|+|.....++..+..+|+.
T Consensus 443 ~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~------------~Gi~~~vLnak~~~rEa~iia~agr~-- 508 (922)
T 1nkt_A 443 EAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTK------------RRIPHNVLNAKYHEQEATIIAVAGRR-- 508 (922)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHH------------TTCCCEEECSSCHHHHHHHHHTTTST--
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH------------CCCCEEEecCChhHHHHHHHHhcCCC--
Confidence 4588899998887777788999999999999999999985 68999999999876666556667775
Q ss_pred cceeeEEEeeeccccccceeccc----------------------------------------------------ceEEE
Q 001337 1039 NKRVKCTLISTRAGSLGINLHSA----------------------------------------------------NRVII 1066 (1097)
Q Consensus 1039 n~~v~VlLiStkagg~GLNL~~A----------------------------------------------------n~VIi 1066 (1097)
+. ++|+|..+|.|+++... .+||.
T Consensus 509 -G~---VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~ 584 (922)
T 1nkt_A 509 -GG---VTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLG 584 (922)
T ss_dssp -TC---EEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEE
T ss_pred -Ce---EEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEe
Confidence 33 48999999999999853 59999
Q ss_pred EcCCcCCcccHHHHHHHhhhcccc
Q 001337 1067 VDGSWNPTYDLQAIYRAWRCMDKQ 1090 (1097)
Q Consensus 1067 ~D~~WNP~~~~QAiGRa~RiGQkK 1090 (1097)
+|.|-++..+.|++||++|.|..=
T Consensus 585 te~pes~riy~qr~GRTGRqGdpG 608 (922)
T 1nkt_A 585 TERHESRRIDNQLRGRSGRQGDPG 608 (922)
T ss_dssp CSCCSSHHHHHHHHHTSSGGGCCE
T ss_pred ccCCCCHHHHHHHhcccccCCCCe
Confidence 999999999999999999999763
No 72
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.33 E-value=1.4e-12 Score=159.40 Aligned_cols=96 Identities=18% Similarity=0.060 Sum_probs=76.6
Q ss_pred CCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccceeeEEEeeeccccc
Q 001337 975 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 1054 (1097)
Q Consensus 975 ~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~~v~VlLiStkagg~ 1054 (1097)
.+.++|||+.....++.+.+.|.. .|+.+..++|+++.++ |.. ++. -+|++|.+++.
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~------------~g~~v~~lHG~l~q~e-------r~~--~~~--~VLVATdVaer 451 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSG------------LGINAVAYYRGLDVSV-------IPT--IGD--VVVVATDALMT 451 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHT------------TTCCEEEECTTSCGGG-------SCS--SSC--EEEEECTTHHH
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHh------------CCCcEEEecCCCCHHH-------HHh--CCC--cEEEECChHHc
Confidence 368999999999999999999985 5788999999999765 333 222 36999999999
Q ss_pred cceecccceEE----------EEc-----------CCcCCcccHHHHHHHhhhccccccccc
Q 001337 1055 GINLHSANRVI----------IVD-----------GSWNPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1055 GLNL~~An~VI----------i~D-----------~~WNP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
|||+. ++.|| +|| .|-++....|++||+.| |..-.+.+|
T Consensus 452 GIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~i~lv 511 (666)
T 3o8b_A 452 GYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGIYRFV 511 (666)
T ss_dssp HCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEEEEES
T ss_pred cCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCEEEEE
Confidence 99986 99888 455 67777889999999999 654334333
No 73
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.33 E-value=3.9e-12 Score=171.08 Aligned_cols=150 Identities=16% Similarity=0.174 Sum_probs=89.8
Q ss_pred CccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecc-hhhhhhhHHhhcccccCCCcccEEEeecccchhHHHH
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAE 671 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P-~sLv~qW~~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~ 671 (1097)
.+.+.+++-++|.|||+.+...|...+.... .+++|+|+| .+|+.|=.+++.+.+... ..++|..+.|......
T Consensus 941 ~~~nvlv~APTGSGKTliaelail~~l~~~~--~~kavyi~P~raLa~q~~~~~~~~f~~~-~g~~V~~ltGd~~~~~-- 1015 (1724)
T 4f92_B 941 SDDNVFVGAPTGSGKTICAEFAILRMLLQSS--EGRCVYITPMEALAEQVYMDWYEKFQDR-LNKKVVLLTGETSTDL-- 1015 (1724)
T ss_dssp CCSCEEEECCTTSCCHHHHHHHHHHHHHHCT--TCCEEEECSCHHHHHHHHHHHHHHHTTT-SCCCEEECCSCHHHHH--
T ss_pred CCCcEEEEeCCCCCchHHHHHHHHHHHHhCC--CCEEEEEcChHHHHHHHHHHHHHHhchh-cCCEEEEEECCCCcch--
Confidence 4568999999999999977555554444322 357999999 557777555554332211 2356777666443221
Q ss_pred HHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEecccchhcccchhHHH-HHhhh--------c
Q 001337 672 LLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQ-ALKQV--------K 742 (1097)
Q Consensus 672 ~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiDEAH~iKN~~S~~~k-al~~l--------~ 742 (1097)
.+....+|+|+|++.+..+..... .... -....+||+||+|.|......... .+.++ +
T Consensus 1016 ---~~~~~~~IiV~TPEkld~llr~~~--~~~~--------l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~ 1082 (1724)
T 4f92_B 1016 ---KLLGKGNIIISTPEKWDILSRRWK--QRKN--------VQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIER 1082 (1724)
T ss_dssp ---HHHHHCSEEEECHHHHHHHHTTTT--TCHH--------HHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSS
T ss_pred ---hhcCCCCEEEECHHHHHHHHhCcc--cccc--------cceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCC
Confidence 223567999999998754432111 1111 126789999999999764433222 22222 2
Q ss_pred cceeeeeccCccccchhhhh
Q 001337 743 CQRRIALTGSPLQNNLMEYY 762 (1097)
Q Consensus 743 a~~RllLTGTPiqNnl~El~ 762 (1097)
..+.++||||- .|..|+.
T Consensus 1083 ~~riI~lSATl--~N~~dla 1100 (1724)
T 4f92_B 1083 PIRIVALSSSL--SNAKDVA 1100 (1724)
T ss_dssp CCEEEEEESCB--TTHHHHH
T ss_pred CceEEEEeCCC--CCHHHHH
Confidence 34679999994 2344443
No 74
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.32 E-value=2.4e-12 Score=158.56 Aligned_cols=114 Identities=18% Similarity=0.135 Sum_probs=99.8
Q ss_pred CcceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccc
Q 001337 959 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1038 (1097)
Q Consensus 959 S~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~ 1038 (1097)
..|+.+|.+.|......+.+||||+.+....+.|...|.. .|+++..++|.....+|..+..+|+.
T Consensus 424 ~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~------------~gi~~~vLnak~~~rEa~iia~agr~-- 489 (853)
T 2fsf_A 424 AEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTK------------AGIKHNVLNAKFHANEAAIVAQAGYP-- 489 (853)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHH------------TTCCCEECCTTCHHHHHHHHHTTTST--
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHH------------CCCCEEEecCChhHHHHHHHHhcCCC--
Confidence 4688999999988777789999999999999999999985 68999999999876777666677876
Q ss_pred cceeeEEEeeeccccccceeccc-------------------------------------ceEEEEcCCcCCcccHHHHH
Q 001337 1039 NKRVKCTLISTRAGSLGINLHSA-------------------------------------NRVIIVDGSWNPTYDLQAIY 1081 (1097)
Q Consensus 1039 n~~v~VlLiStkagg~GLNL~~A-------------------------------------n~VIi~D~~WNP~~~~QAiG 1081 (1097)
+. ++|+|..+|.|+++... .+||.+|.|-++..+.|++|
T Consensus 490 -G~---VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~G 565 (853)
T 2fsf_A 490 -AA---VTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRG 565 (853)
T ss_dssp -TC---EEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHT
T ss_pred -Ce---EEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhcc
Confidence 33 59999999999999853 59999999999999999999
Q ss_pred HHhhhcccc
Q 001337 1082 RAWRCMDKQ 1090 (1097)
Q Consensus 1082 Ra~RiGQkK 1090 (1097)
|++|.|..=
T Consensus 566 RTGRqGd~G 574 (853)
T 2fsf_A 566 RSGRQGDAG 574 (853)
T ss_dssp TSSGGGCCE
T ss_pred ccccCCCCe
Confidence 999999763
No 75
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.32 E-value=2.3e-12 Score=173.40 Aligned_cols=166 Identities=14% Similarity=0.165 Sum_probs=99.8
Q ss_pred cccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhh-cc------ccceeeEeecc-hh
Q 001337 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS-VN------LGLRTALIVTP-VN 636 (1097)
Q Consensus 565 ~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~-~~------~~~k~~LIV~P-~s 636 (1097)
.|.|.|.+++..++ ..+.+.+++.++|.|||+.+...+...+.. .. ...+++|+|+| ++
T Consensus 79 ~ln~iQs~~~~~al-------------~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kA 145 (1724)
T 4f92_B 79 TLNRIQSKLYRAAL-------------ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRS 145 (1724)
T ss_dssp BCCHHHHHTHHHHH-------------TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHH
T ss_pred CCCHHHHHHHHHHH-------------cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHH
Confidence 45667776655443 346789999999999998775555443322 11 12357999999 66
Q ss_pred hhhhhHHhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCC
Q 001337 637 VLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGP 716 (1097)
Q Consensus 637 Lv~qW~~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~ 716 (1097)
|+.+=.++|.+.+.. ..++|..+.|...... ......+|+|+|++.+..+..... +.. + -...
T Consensus 146 La~e~~~~l~~~~~~--~gi~V~~~tGd~~~~~-----~~~~~~~IlVtTpEkld~llr~~~--~~~-------~-l~~v 208 (1724)
T 4f92_B 146 LVQEMVGSFGKRLAT--YGITVAELTGDHQLCK-----EEISATQIIVCTPEKWDIITRKGG--ERT-------Y-TQLV 208 (1724)
T ss_dssp HHHHHHHHHHHHHTT--TTCCEEECCSSCSSCC-----TTGGGCSEEEECHHHHHHHTTSST--THH-------H-HTTE
T ss_pred HHHHHHHHHHHHHhh--CCCEEEEEECCCCCCc-----cccCCCCEEEECHHHHHHHHcCCc--cch-------h-hcCc
Confidence 887777777655433 2356766665433211 112467899999998765432211 111 1 1256
Q ss_pred CEEEecccchhcccchhHH-----HHHhh---h-ccceeeeeccCccccchhhhh
Q 001337 717 DILVCDEAHMIKNTRADTT-----QALKQ---V-KCQRRIALTGSPLQNNLMEYY 762 (1097)
Q Consensus 717 dlVIiDEAH~iKN~~S~~~-----kal~~---l-~a~~RllLTGTPiqNnl~El~ 762 (1097)
.+||+||+|.+........ +.+.. + ...++++||||- .|+.|+.
T Consensus 209 ~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dvA 261 (1724)
T 4f92_B 209 RLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATL--PNYEDVA 261 (1724)
T ss_dssp EEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHHH
T ss_pred CEEEEecchhcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHHH
Confidence 7899999999965432222 22211 1 234689999994 2455543
No 76
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.30 E-value=1.5e-12 Score=140.26 Aligned_cols=161 Identities=12% Similarity=0.091 Sum_probs=104.6
Q ss_pred ccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhc---cccceeeEeecch-hhhh
Q 001337 564 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV---NLGLRTALIVTPV-NVLH 639 (1097)
Q Consensus 564 ~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~---~~~~k~~LIV~P~-sLv~ 639 (1097)
..++|||.+++..++ .+..+|+..++|.|||++++..+...+... .....++|||+|. .|+.
T Consensus 46 ~~~~~~Q~~~i~~~~--------------~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~ 111 (236)
T 2pl3_A 46 RLVTEIQKQTIGLAL--------------QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAY 111 (236)
T ss_dssp CBCCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHH
T ss_pred CCCCHHHHHHHHHHh--------------CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHH
Confidence 357999999988774 346789999999999998666554433221 1123579999996 6899
Q ss_pred hhHHhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEE
Q 001337 640 NWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDIL 719 (1097)
Q Consensus 640 qW~~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlV 719 (1097)
||.+++.++... ..+.+..+.+....... ... ....+|+|+|++.+....... ..+....+++|
T Consensus 112 q~~~~~~~~~~~--~~~~~~~~~g~~~~~~~--~~~-~~~~~iiv~Tp~~l~~~l~~~-----------~~~~~~~~~~l 175 (236)
T 2pl3_A 112 QTFEVLRKVGKN--HDFSAGLIIGGKDLKHE--AER-INNINILVCTPGRLLQHMDET-----------VSFHATDLQML 175 (236)
T ss_dssp HHHHHHHHHTTT--SSCCEEEECCC--CHHH--HHH-HTTCSEEEECHHHHHHHHHHC-----------SSCCCTTCCEE
T ss_pred HHHHHHHHHhCC--CCeeEEEEECCCCHHHH--HHh-CCCCCEEEECHHHHHHHHHhc-----------CCcccccccEE
Confidence 999999998754 23455555554322211 111 246799999998874321000 00112378899
Q ss_pred Eecccchhcccc--hhHHHHHhhhc-cceeeeeccCcc
Q 001337 720 VCDEAHMIKNTR--ADTTQALKQVK-CQRRIALTGSPL 754 (1097)
Q Consensus 720 IiDEAH~iKN~~--S~~~kal~~l~-a~~RllLTGTPi 754 (1097)
|+||||++.+.. ......+..+. ..++++||||+-
T Consensus 176 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 176 VLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQT 213 (236)
T ss_dssp EETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCC
T ss_pred EEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCC
Confidence 999999987543 34444455553 456899999984
No 77
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.29 E-value=1.1e-12 Score=146.78 Aligned_cols=122 Identities=20% Similarity=0.275 Sum_probs=103.8
Q ss_pred cccCcceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhc
Q 001337 956 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 1035 (1097)
Q Consensus 956 ~~~S~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn 1035 (1097)
...+.|+.+|.+++.... +.++|||+.....++.+...|.. .|+.+..++|+++..+|..+++.|+
T Consensus 10 ~~~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~------------~g~~~~~lhg~l~~~~r~~~~~~f~ 75 (300)
T 3i32_A 10 APVRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLR------------LGHPAQALHGDMSQGERERVMGAFR 75 (300)
T ss_dssp CCSSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHT------------TTCCEEEECSCCCTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHh------------CCCCEEEEeCCCCHHHHHHHHHHhh
Confidence 345779999999998754 78999999999999999999985 5888999999999999999999999
Q ss_pred ccccceeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhccccccccc
Q 001337 1036 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDKQSQFLL 1095 (1097)
Q Consensus 1036 ~~~n~~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~V~VY 1095 (1097)
+ +.++ +|++|.+++.|||++.+++||++|++|++..+.|++||++|.|+.-.++++
T Consensus 76 ~---g~~~-vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l 131 (300)
T 3i32_A 76 Q---GEVR-VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLL 131 (300)
T ss_dssp H---TSCC-EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEE
T ss_pred c---CCce-EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEE
Confidence 7 3444 588999999999999999999999999999999999999999987665544
No 78
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.27 E-value=2.9e-12 Score=161.12 Aligned_cols=112 Identities=16% Similarity=0.019 Sum_probs=84.9
Q ss_pred CCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhccc--ccceeeEEEeeeccc
Q 001337 975 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP--LNKRVKCTLISTRAG 1052 (1097)
Q Consensus 975 ~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~--~n~~v~VlLiStkag 1052 (1097)
.+.++|||......++.+...|...... ........++.+..++|+++.++|.++++.|... .++..+ +|++|.++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~-l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~k-VlVAT~ia 379 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQ-LVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRK-VVISTNIA 379 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHH-HHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEE-EEEECTHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHh-hcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceE-EEEeCcHH
Confidence 3679999999999988888888631000 0000001477899999999999999999999811 013444 58999999
Q ss_pred cccceecccceEEEEcC------------------CcCCcccHHHHHHHhhhcc
Q 001337 1053 SLGINLHSANRVIIVDG------------------SWNPTYDLQAIYRAWRCMD 1088 (1097)
Q Consensus 1053 g~GLNL~~An~VIi~D~------------------~WNP~~~~QAiGRa~RiGQ 1088 (1097)
+.|||+.+.++||.++. |.+.+...|++||++|.+.
T Consensus 380 e~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~ 433 (773)
T 2xau_A 380 ETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 433 (773)
T ss_dssp HHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSS
T ss_pred HhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCC
Confidence 99999999999999655 7788889999999999843
No 79
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.26 E-value=3.8e-12 Score=136.76 Aligned_cols=159 Identities=12% Similarity=0.056 Sum_probs=103.3
Q ss_pred cccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch-hhhhhhHH
Q 001337 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 643 (1097)
Q Consensus 565 ~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~-sLv~qW~~ 643 (1097)
.++|||.+++..++ .+..+|+..++|.|||++.+..+...+... ....++|||+|. .|+.||.+
T Consensus 46 ~~~~~Q~~~i~~~~--------------~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~ 110 (230)
T 2oxc_A 46 RPSPVQLKAIPLGR--------------CGLDLIVQAKSGTGKTCVFSTIALDSLVLE-NLSTQILILAPTREIAVQIHS 110 (230)
T ss_dssp SCCHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHHHCCTT-SCSCCEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--------------CCCCEEEECCCCCcHHHHHHHHHHHHHHhc-CCCceEEEEeCCHHHHHHHHH
Confidence 48999999988663 246789999999999987544443332221 123589999996 68999999
Q ss_pred hhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEecc
Q 001337 644 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 723 (1097)
Q Consensus 644 Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiDE 723 (1097)
++.++.... ..+++..+.+....... ... ....+|+|+|++.+..+..... +....+++||+||
T Consensus 111 ~~~~~~~~~-~~~~~~~~~g~~~~~~~--~~~-~~~~~Iiv~Tp~~l~~~~~~~~------------~~~~~~~~lViDE 174 (230)
T 2oxc_A 111 VITAIGIKM-EGLECHVFIGGTPLSQD--KTR-LKKCHIAVGSPGRIKQLIELDY------------LNPGSIRLFILDE 174 (230)
T ss_dssp HHHHHTTTS-TTCCEEEECTTSCHHHH--HHH-TTSCSEEEECHHHHHHHHHTTS------------SCGGGCCEEEESS
T ss_pred HHHHHhccc-CCceEEEEeCCCCHHHH--HHh-ccCCCEEEECHHHHHHHHhcCC------------cccccCCEEEeCC
Confidence 999886431 23566666554332211 111 2467899999998754221110 1123688999999
Q ss_pred cchhcccc---hhHHHHHhhhc-cceeeeeccCcc
Q 001337 724 AHMIKNTR---ADTTQALKQVK-CQRRIALTGSPL 754 (1097)
Q Consensus 724 AH~iKN~~---S~~~kal~~l~-a~~RllLTGTPi 754 (1097)
||++-... ..+...+..+. ..++++||||+-
T Consensus 175 ah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~ 209 (230)
T 2oxc_A 175 ADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYP 209 (230)
T ss_dssp HHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCC
T ss_pred chHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccC
Confidence 99985432 33334445554 556899999963
No 80
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.26 E-value=2.3e-12 Score=135.44 Aligned_cols=160 Identities=13% Similarity=0.055 Sum_probs=103.7
Q ss_pred cccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch-hhhhhhHH
Q 001337 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 643 (1097)
Q Consensus 565 ~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~-sLv~qW~~ 643 (1097)
.++|||.+++..++ .+..+++..++|.|||+.++..+...+... ....++|||+|. .|+.||.+
T Consensus 25 ~~~~~Q~~~i~~~~--------------~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-~~~~~~lil~Pt~~L~~q~~~ 89 (206)
T 1vec_A 25 KPSPIQEESIPIAL--------------SGRDILARAKNGTGKSGAYLIPLLERLDLK-KDNIQAMVIVPTRELALQVSQ 89 (206)
T ss_dssp SCCHHHHHHHHHHH--------------TTCCEEEECCSSSTTHHHHHHHHHHHCCTT-SCSCCEEEECSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHc--------------cCCCEEEECCCCCchHHHHHHHHHHHhccc-CCCeeEEEEeCcHHHHHHHHH
Confidence 58999999988764 246789999999999987665554443221 123479999995 58899999
Q ss_pred hhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEecc
Q 001337 644 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 723 (1097)
Q Consensus 644 Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiDE 723 (1097)
++.++.... ..+.+..+.+...... .........+|+|+|++.+........ .....+++||+||
T Consensus 90 ~~~~~~~~~-~~~~~~~~~g~~~~~~--~~~~~~~~~~i~v~T~~~l~~~~~~~~------------~~~~~~~~lViDE 154 (206)
T 1vec_A 90 ICIQVSKHM-GGAKVMATTGGTNLRD--DIMRLDDTVHVVIATPGRILDLIKKGV------------AKVDHVQMIVLDE 154 (206)
T ss_dssp HHHHHTTTS-SSCCEEEECSSSCHHH--HHHHTTSCCSEEEECHHHHHHHHHTTC------------SCCTTCCEEEEET
T ss_pred HHHHHHhhc-CCceEEEEeCCccHHH--HHHhcCCCCCEEEeCHHHHHHHHHcCC------------cCcccCCEEEEEC
Confidence 998876531 1255555555433221 122333567899999988753211100 1123789999999
Q ss_pred cchhcccc--hhHHHHHhhhc-cceeeeeccCcc
Q 001337 724 AHMIKNTR--ADTTQALKQVK-CQRRIALTGSPL 754 (1097)
Q Consensus 724 AH~iKN~~--S~~~kal~~l~-a~~RllLTGTPi 754 (1097)
||++.... ..+...+..+. ..++++||||+-
T Consensus 155 ah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 155 ADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 188 (206)
T ss_dssp HHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCC
T ss_pred hHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCC
Confidence 99986532 22233333443 567899999984
No 81
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.25 E-value=2.2e-12 Score=137.60 Aligned_cols=159 Identities=12% Similarity=0.049 Sum_probs=99.6
Q ss_pred ccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch-hhhhhhH
Q 001337 564 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWK 642 (1097)
Q Consensus 564 ~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~-sLv~qW~ 642 (1097)
..++|||.+++..++ .+..+|+..++|.|||++++..+...+... ....++|||+|. .|+.||.
T Consensus 35 ~~~~~~Q~~~i~~~~--------------~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~ 99 (224)
T 1qde_A 35 EEPSAIQQRAIMPII--------------EGHDVLAQAQSGTGKTGTFSIAALQRIDTS-VKAPQALMLAPTRELALQIQ 99 (224)
T ss_dssp CSCCHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHHHCCTT-CCSCCEEEECSSHHHHHHHH
T ss_pred CCCcHHHHHHHHHHh--------------cCCCEEEECCCCCcHHHHHHHHHHHHHhcc-CCCceEEEEECCHHHHHHHH
Confidence 358999999988764 245789999999999987444433333221 123589999996 6889999
Q ss_pred HhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEec
Q 001337 643 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 722 (1097)
Q Consensus 643 ~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiD 722 (1097)
+++.++... ..+.+..+.+...... ....+ ...+|+|+|++.+....... ......+++||+|
T Consensus 100 ~~~~~~~~~--~~~~~~~~~g~~~~~~--~~~~~-~~~~iiv~Tp~~l~~~~~~~------------~~~~~~~~~iViD 162 (224)
T 1qde_A 100 KVVMALAFH--MDIKVHACIGGTSFVE--DAEGL-RDAQIVVGTPGRVFDNIQRR------------RFRTDKIKMFILD 162 (224)
T ss_dssp HHHHHHTTT--SCCCEEEECC------------C-TTCSEEEECHHHHHHHHHTT------------SSCCTTCCEEEEE
T ss_pred HHHHHHhcc--cCceEEEEeCCcchHH--HHhcC-CCCCEEEECHHHHHHHHHhC------------CcchhhCcEEEEc
Confidence 999988754 2355555554332111 11112 23789999998875321111 0112368999999
Q ss_pred ccchhcccc--hhHHHHHhhh-ccceeeeeccCcc
Q 001337 723 EAHMIKNTR--ADTTQALKQV-KCQRRIALTGSPL 754 (1097)
Q Consensus 723 EAH~iKN~~--S~~~kal~~l-~a~~RllLTGTPi 754 (1097)
|||++.... ..+...+..+ ...+.++||||+-
T Consensus 163 Eah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~ 197 (224)
T 1qde_A 163 EADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMP 197 (224)
T ss_dssp THHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCC
T ss_pred ChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecC
Confidence 999986533 2233344444 3456899999984
No 82
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.24 E-value=5e-12 Score=137.87 Aligned_cols=160 Identities=16% Similarity=0.100 Sum_probs=104.4
Q ss_pred cccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch-hhhhhhHH
Q 001337 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 643 (1097)
Q Consensus 565 ~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~-sLv~qW~~ 643 (1097)
.++|||.+++..++ .+..+|+..++|.|||++++..+...+.... ...++|||+|. .|+.||.+
T Consensus 65 ~~~~~Q~~~i~~i~--------------~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-~~~~~lil~Ptr~L~~q~~~ 129 (249)
T 3ber_A 65 KPTKIQIEAIPLAL--------------QGRDIIGLAETGSGKTGAFALPILNALLETP-QRLFALVLTPTRELAFQISE 129 (249)
T ss_dssp SCCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-CSSCEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--------------CCCCEEEEcCCCCCchhHhHHHHHHHHhcCC-CCceEEEEeCCHHHHHHHHH
Confidence 58999999988764 3467899999999999886665554433322 23479999996 58899999
Q ss_pred hhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEecc
Q 001337 644 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 723 (1097)
Q Consensus 644 Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiDE 723 (1097)
++.++... ..+.+..+.+...... .........+|+|+|++.+...... ...+....+++||+||
T Consensus 130 ~~~~~~~~--~~~~~~~~~g~~~~~~--~~~~~~~~~~I~v~Tp~~l~~~l~~-----------~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 130 QFEALGSS--IGVQSAVIVGGIDSMS--QSLALAKKPHIIIATPGRLIDHLEN-----------TKGFNLRALKYLVMDE 194 (249)
T ss_dssp HHHHHHGG--GTCCEEEECTTSCHHH--HHHHHHTCCSEEEECHHHHHHHHHH-----------STTCCCTTCCEEEECS
T ss_pred HHHHHhcc--CCeeEEEEECCCChHH--HHHHhcCCCCEEEECHHHHHHHHHc-----------CCCcCccccCEEEEcC
Confidence 99988653 1245555544332221 1122335679999999987532110 0011123689999999
Q ss_pred cchhcccc--hhHHHHHhhh-ccceeeeeccCcc
Q 001337 724 AHMIKNTR--ADTTQALKQV-KCQRRIALTGSPL 754 (1097)
Q Consensus 724 AH~iKN~~--S~~~kal~~l-~a~~RllLTGTPi 754 (1097)
||++.+.. ..+.+.+..+ ...++++||||+-
T Consensus 195 ah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~ 228 (249)
T 3ber_A 195 ADRILNMDFETEVDKILKVIPRDRKTFLFSATMT 228 (249)
T ss_dssp HHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCC
T ss_pred hhhhhccChHHHHHHHHHhCCCCCeEEEEeccCC
Confidence 99986642 2333444444 3567899999984
No 83
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.24 E-value=1.5e-12 Score=138.81 Aligned_cols=160 Identities=16% Similarity=0.102 Sum_probs=102.0
Q ss_pred cccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch-hhhhhhHH
Q 001337 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 643 (1097)
Q Consensus 565 ~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~-sLv~qW~~ 643 (1097)
.++|||.+++..+++ +..+|+..++|.|||+.++..+...+.... ...++|||+|. .|+.||.+
T Consensus 26 ~~~~~Q~~~i~~~~~--------------~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~-~~~~~lil~Pt~~L~~q~~~ 90 (219)
T 1q0u_A 26 KPTEIQERIIPGALR--------------GESMVGQSQTGTGKTHAYLLPIMEKIKPER-AEVQAVITAPTRELATQIYH 90 (219)
T ss_dssp SCCHHHHHHHHHHHH--------------TCCEEEECCSSHHHHHHHHHHHHHHCCTTS-CSCCEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC--------------CCCEEEECCCCChHHHHHHHHHHHHHHhCc-CCceEEEEcCcHHHHHHHHH
Confidence 579999999987742 457899999999999876555544433211 23579999996 68899999
Q ss_pred hhcccccCCCc--ccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEe
Q 001337 644 EFMKWRPSELK--PLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 721 (1097)
Q Consensus 644 Ei~k~~p~~~~--~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIi 721 (1097)
++.++...... .+.+..+.+..... .....+....+|+|+|++.+........ +....+++||+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~------------~~~~~~~~lVi 156 (219)
T 1q0u_A 91 ETLKITKFCPKDRMIVARCLIGGTDKQ--KALEKLNVQPHIVIGTPGRINDFIREQA------------LDVHTAHILVV 156 (219)
T ss_dssp HHHHHHTTSCGGGCCCEEEECCCSHHH--HTTCCCSSCCSEEEECHHHHHHHHHTTC------------CCGGGCCEEEE
T ss_pred HHHHHhhhcccccceEEEEEeCCCCHH--HHHHHcCCCCCEEEeCHHHHHHHHHcCC------------CCcCcceEEEE
Confidence 99887653110 24555544433221 1111122356899999988753221110 11236889999
Q ss_pred cccchhcccc--hhHHHHHhhhc-cceeeeeccCc
Q 001337 722 DEAHMIKNTR--ADTTQALKQVK-CQRRIALTGSP 753 (1097)
Q Consensus 722 DEAH~iKN~~--S~~~kal~~l~-a~~RllLTGTP 753 (1097)
||||++.... ......+..+. ..++++||||+
T Consensus 157 DEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 191 (219)
T 1q0u_A 157 DEADLMLDMGFITDVDQIAARMPKDLQMLVFSATI 191 (219)
T ss_dssp CSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCC
T ss_pred cCchHHhhhChHHHHHHHHHhCCcccEEEEEecCC
Confidence 9999986533 33344444443 45689999998
No 84
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.24 E-value=4.7e-12 Score=137.92 Aligned_cols=161 Identities=11% Similarity=0.110 Sum_probs=103.6
Q ss_pred ccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhcc--------ccceeeEeecch
Q 001337 564 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVN--------LGLRTALIVTPV 635 (1097)
Q Consensus 564 ~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~--------~~~k~~LIV~P~ 635 (1097)
..++|||.+++..++ .+..+|+..++|.|||+.++..+...+.... ....++|||+|.
T Consensus 44 ~~~~~~Q~~~i~~i~--------------~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt 109 (253)
T 1wrb_A 44 QRPTPIQKNAIPAIL--------------EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPT 109 (253)
T ss_dssp CSCCHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSS
T ss_pred CCCCHHHHHHHHHHh--------------CCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECC
Confidence 358999999988764 2467899999999999877665554443211 112479999996
Q ss_pred -hhhhhhHHhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhcc
Q 001337 636 -NVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD 714 (1097)
Q Consensus 636 -sLv~qW~~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~ 714 (1097)
.|+.||.+++.++... ..+.+..+.+...... .........+|+|+|++.+........ +...
T Consensus 110 ~~L~~q~~~~~~~~~~~--~~~~~~~~~g~~~~~~--~~~~~~~~~~Ivv~Tp~~l~~~l~~~~------------~~~~ 173 (253)
T 1wrb_A 110 RELAIQILSESQKFSLN--TPLRSCVVYGGADTHS--QIREVQMGCHLLVATPGRLVDFIEKNK------------ISLE 173 (253)
T ss_dssp HHHHHHHHHHHHHHHTT--SSCCEEEECSSSCSHH--HHHHHSSCCSEEEECHHHHHHHHHTTS------------BCCT
T ss_pred HHHHHHHHHHHHHHhcc--CCceEEEEECCCCHHH--HHHHhCCCCCEEEECHHHHHHHHHcCC------------CChh
Confidence 6889999999998754 2345554444332211 112233467899999998754221110 1123
Q ss_pred CCCEEEecccchhcccc--hhHHHHHhhhc-----cceeeeeccCcc
Q 001337 715 GPDILVCDEAHMIKNTR--ADTTQALKQVK-----CQRRIALTGSPL 754 (1097)
Q Consensus 715 ~~dlVIiDEAH~iKN~~--S~~~kal~~l~-----a~~RllLTGTPi 754 (1097)
.+++||+||||++.... ......+..+. ....++|||||-
T Consensus 174 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 174 FCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFP 220 (253)
T ss_dssp TCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCC
T ss_pred hCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCC
Confidence 67899999999986542 33344444321 456899999984
No 85
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.20 E-value=4.1e-11 Score=144.85 Aligned_cols=116 Identities=20% Similarity=0.139 Sum_probs=98.2
Q ss_pred cCcceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhccc
Q 001337 958 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 1037 (1097)
Q Consensus 958 ~S~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~ 1037 (1097)
...|..+|++.|......+.+||||+.+....+.|...|.. .|++...++|+....+|..+..+|..
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~------------~Gi~~~vLhgkq~~rE~~ii~~ag~~- 522 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKK------------KGIPHQVLNAKYHEKEAEIVAKAGQK- 522 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHT------------TTCCCEEECSCHHHHHHHHHHHHHST-
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHH------------CCCCEEEeeCCchHHHHHHHHhCCCC-
Confidence 34588899999988777789999999999999999999985 68999999999665555444555654
Q ss_pred ccceeeEEEeeeccccccceec--------ccceEEEEcCCcCCcccHHHHHHHhhhccccc
Q 001337 1038 LNKRVKCTLISTRAGSLGINLH--------SANRVIIVDGSWNPTYDLQAIYRAWRCMDKQS 1091 (1097)
Q Consensus 1038 ~n~~v~VlLiStkagg~GLNL~--------~An~VIi~D~~WNP~~~~QAiGRa~RiGQkK~ 1091 (1097)
+. ++|+|..+|.|+++. +..+||.++.|-++..+.|++||+.|.|+.=.
T Consensus 523 --g~---VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~ 579 (822)
T 3jux_A 523 --GM---VTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGE 579 (822)
T ss_dssp --TC---EEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCE
T ss_pred --Ce---EEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCee
Confidence 33 599999999999997 66799999999999999999999999998644
No 86
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.20 E-value=4.3e-12 Score=137.06 Aligned_cols=160 Identities=14% Similarity=0.091 Sum_probs=99.1
Q ss_pred cccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch-hhhhhhHH
Q 001337 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 643 (1097)
Q Consensus 565 ~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~-sLv~qW~~ 643 (1097)
.++|||.+++..++ .+..+|+..++|.|||+.++..+...+... ....++|||+|. .|+.||.+
T Consensus 52 ~~~~~Q~~ai~~i~--------------~~~~~li~apTGsGKT~~~~l~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~ 116 (237)
T 3bor_A 52 KPSAIQQRAIIPCI--------------KGYDVIAQAQSGTGKTATFAISILQQLEIE-FKETQALVLAPTRELAQQIQK 116 (237)
T ss_dssp SCCHHHHHHHHHHH--------------TTCCEEECCCSSHHHHHHHHHHHHHHCCTT-SCSCCEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--------------CCCCEEEECCCCCcHHHHHHHHHHHHHHhc-CCCceEEEEECcHHHHHHHHH
Confidence 48999999988764 245689999999999987655554443221 123589999996 58899999
Q ss_pred hhcccccCCCcccEEEeecccchhHHHHHHHHHHh-cCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEec
Q 001337 644 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 722 (1097)
Q Consensus 644 Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~-~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiD 722 (1097)
++.++.... .+.+....+..... ........ ..+++|+|++.+........ +....+++||+|
T Consensus 117 ~~~~~~~~~--~~~~~~~~g~~~~~--~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~------------~~~~~~~~lViD 180 (237)
T 3bor_A 117 VILALGDYM--GATCHACIGGTNVR--NEMQKLQAEAPHIVVGTPGRVFDMLNRRY------------LSPKWIKMFVLD 180 (237)
T ss_dssp HHHHHTTTT--TCCEEEECC---------------CCCSEEEECHHHHHHHHHTTS------------SCSTTCCEEEEE
T ss_pred HHHHHhhhc--CceEEEEECCCchH--HHHHHHhcCCCCEEEECHHHHHHHHHhCC------------cCcccCcEEEEC
Confidence 999887532 23444433322211 11112222 36899999987653211100 111368999999
Q ss_pred ccchhccc--chhHHHHHhhhc-cceeeeeccCccc
Q 001337 723 EAHMIKNT--RADTTQALKQVK-CQRRIALTGSPLQ 755 (1097)
Q Consensus 723 EAH~iKN~--~S~~~kal~~l~-a~~RllLTGTPiq 755 (1097)
|||++... ...+...+..+. ..+.++||||+-.
T Consensus 181 Eah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~ 216 (237)
T 3bor_A 181 EADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPT 216 (237)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCH
T ss_pred CchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCH
Confidence 99988543 334455555553 4567999999843
No 87
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.15 E-value=2.5e-10 Score=141.35 Aligned_cols=117 Identities=17% Similarity=0.199 Sum_probs=101.1
Q ss_pred cceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhccccc
Q 001337 960 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1039 (1097)
Q Consensus 960 ~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n 1039 (1097)
+++..|++.|......+.++|||+......+.|..+|.. .|+.+..++|+++..+|.++++.|..
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~------------~gi~~~~lh~~~~~~~R~~~~~~f~~--- 487 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVE------------HGIRARYLHHELDAFKRQALIRDLRL--- 487 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHH------------TTCCEEEECTTCCHHHHHHHHHHHHT---
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHh------------cCCCceeecCCCCHHHHHHHHHHhhc---
Confidence 455666676776666789999999999999999999986 57888899999999999999999986
Q ss_pred ceeeEEEeeeccccccceecccceEEEEcC-----CcCCcccHHHHHHHhhhcccccc
Q 001337 1040 KRVKCTLISTRAGSLGINLHSANRVIIVDG-----SWNPTYDLQAIYRAWRCMDKQSQ 1092 (1097)
Q Consensus 1040 ~~v~VlLiStkagg~GLNL~~An~VIi~D~-----~WNP~~~~QAiGRa~RiGQkK~V 1092 (1097)
+.+. +|++|.+++.|+|++.++.||++|+ ++++....|++||++|.|.-+-+
T Consensus 488 g~~~-VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i 544 (664)
T 1c4o_A 488 GHYD-CLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVW 544 (664)
T ss_dssp TSCS-EEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEE
T ss_pred CCce-EEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCCCEEE
Confidence 4444 5889999999999999999999998 89999999999999999754433
No 88
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.12 E-value=3.8e-11 Score=128.50 Aligned_cols=159 Identities=14% Similarity=0.157 Sum_probs=100.1
Q ss_pred ccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhc-----cccceeeEeecchh-h
Q 001337 564 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV-----NLGLRTALIVTPVN-V 637 (1097)
Q Consensus 564 ~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~-----~~~~k~~LIV~P~s-L 637 (1097)
..++|||.+++..++ .+..+|+..++|.|||+.++..+...+... .....++|||+|.. |
T Consensus 41 ~~~~~~Q~~~i~~~~--------------~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L 106 (228)
T 3iuy_A 41 LKPTPIQSQAWPIIL--------------QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTREL 106 (228)
T ss_dssp CSCCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHH
T ss_pred CCCCHHHHHHHHHHh--------------CCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHH
Confidence 368999999987663 346789999999999987665544433211 11235789999965 8
Q ss_pred hhhhHHhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCC
Q 001337 638 LHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPD 717 (1097)
Q Consensus 638 v~qW~~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~d 717 (1097)
+.||.+++.++.... +.+..+.+.... ......+....+|+|+|++.+..+..... .....++
T Consensus 107 ~~q~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~------------~~~~~~~ 169 (228)
T 3iuy_A 107 ALHVEAECSKYSYKG---LKSICIYGGRNR--NGQIEDISKGVDIIIATPGRLNDLQMNNS------------VNLRSIT 169 (228)
T ss_dssp HHHHHHHHHHHCCTT---CCEEEECC--------CHHHHHSCCSEEEECHHHHHHHHHTTC------------CCCTTCC
T ss_pred HHHHHHHHHHhcccC---ceEEEEECCCCh--HHHHHHhcCCCCEEEECHHHHHHHHHcCC------------cCcccce
Confidence 899999999986432 444444332221 11122334567999999988754221110 1123689
Q ss_pred EEEecccchhcccc--hhHHHHHhhhc-cceeeeeccCc
Q 001337 718 ILVCDEAHMIKNTR--ADTTQALKQVK-CQRRIALTGSP 753 (1097)
Q Consensus 718 lVIiDEAH~iKN~~--S~~~kal~~l~-a~~RllLTGTP 753 (1097)
+||+||||++.... ......+..+. ....+++|||+
T Consensus 170 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 170 YLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATW 208 (228)
T ss_dssp EEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred EEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeC
Confidence 99999999986542 23344444443 45679999996
No 89
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.11 E-value=1.7e-11 Score=132.83 Aligned_cols=162 Identities=15% Similarity=0.142 Sum_probs=99.6
Q ss_pred cccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch-hhhhhhHH
Q 001337 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWKQ 643 (1097)
Q Consensus 565 ~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~-sLv~qW~~ 643 (1097)
.++|||.+++..++ .+..+++...+|.|||+.++..+...+........++|||+|. .|+.||.+
T Consensus 51 ~~~~~Q~~~i~~~~--------------~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~ 116 (245)
T 3dkp_A 51 MPTPIQMQAIPVML--------------HGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHR 116 (245)
T ss_dssp SCCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--------------CCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHH
Confidence 58999999987663 2456899999999999876555544443222223479999996 58899999
Q ss_pred hhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEecc
Q 001337 644 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 723 (1097)
Q Consensus 644 Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiDE 723 (1097)
++.++... ..+.+..+.+....... .........+|+|+|++.+..+...... .+....+++||+||
T Consensus 117 ~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~I~v~Tp~~l~~~l~~~~~----------~~~~~~~~~lViDE 183 (245)
T 3dkp_A 117 ELIKISEG--TGFRIHMIHKAAVAAKK-FGPKSSKKFDILVTTPNRLIYLLKQDPP----------GIDLASVEWLVVDE 183 (245)
T ss_dssp HHHHHTTT--SCCCEECCCHHHHHHTT-TSTTSCCCCCEEEECHHHHHHHHHSSSC----------SCCCTTCCEEEESS
T ss_pred HHHHHhcc--cCceEEEEecCccHHHH-hhhhhcCCCCEEEECHHHHHHHHHhCCC----------CcccccCcEEEEeC
Confidence 99998754 23455544432211100 0000123458999999887542211100 00112678999999
Q ss_pred cchhcccc-----hhHHHHHhhh--ccceeeeeccCc
Q 001337 724 AHMIKNTR-----ADTTQALKQV--KCQRRIALTGSP 753 (1097)
Q Consensus 724 AH~iKN~~-----S~~~kal~~l--~a~~RllLTGTP 753 (1097)
||++.... ..+...+..+ ...+.++||||+
T Consensus 184 ah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 184 SDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp HHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSC
T ss_pred hHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccC
Confidence 99986422 2222233333 345779999998
No 90
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.08 E-value=6.3e-11 Score=130.13 Aligned_cols=161 Identities=14% Similarity=0.088 Sum_probs=101.4
Q ss_pred cccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhc---cccceeeEeecch-hhhhh
Q 001337 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV---NLGLRTALIVTPV-NVLHN 640 (1097)
Q Consensus 565 ~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~---~~~~k~~LIV~P~-sLv~q 640 (1097)
.++|+|.+++..++. +..+|+..++|.|||+.++..+...+... ......+|||+|. .|+.|
T Consensus 76 ~~~~~Q~~~i~~~~~--------------~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q 141 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE--------------GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQ 141 (262)
T ss_dssp BCCHHHHHHHHHHHH--------------TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHHHhC--------------CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHH
Confidence 589999998876642 35689999999999987655554433321 1123579999995 58899
Q ss_pred hHHhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEE
Q 001337 641 WKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 720 (1097)
Q Consensus 641 W~~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVI 720 (1097)
|.+++.+++... ...+..+.+..... ..........+|+|+|++.+....... ..+....+++||
T Consensus 142 ~~~~~~~~~~~~--~~~~~~~~g~~~~~--~~~~~~~~~~~Iiv~Tp~~l~~~~~~~-----------~~~~~~~l~~lV 206 (262)
T 3ly5_A 142 TFGVLKELMTHH--VHTYGLIMGGSNRS--AEAQKLGNGINIIVATPGRLLDHMQNT-----------PGFMYKNLQCLV 206 (262)
T ss_dssp HHHHHHHHTTTC--CSCEEEECSSSCHH--HHHHHHHHCCSEEEECHHHHHHHHHHC-----------TTCCCTTCCEEE
T ss_pred HHHHHHHHHhhc--CceEEEEECCCCHH--HHHHHhcCCCCEEEEcHHHHHHHHHcc-----------CCcccccCCEEE
Confidence 999999987642 23444443332211 122223345789999998764321100 001123688999
Q ss_pred ecccchhcccc--hhHHHHHhhh-ccceeeeeccCcc
Q 001337 721 CDEAHMIKNTR--ADTTQALKQV-KCQRRIALTGSPL 754 (1097)
Q Consensus 721 iDEAH~iKN~~--S~~~kal~~l-~a~~RllLTGTPi 754 (1097)
+||||++-... ..+...+..+ ...+.++|||||-
T Consensus 207 iDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 207 IDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQT 243 (262)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCC
T ss_pred EcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCC
Confidence 99999986532 2333344444 3456799999984
No 91
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.03 E-value=7.9e-11 Score=127.45 Aligned_cols=160 Identities=12% Similarity=0.077 Sum_probs=102.0
Q ss_pred ccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhcc----ccceeeEeecchh-hh
Q 001337 564 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVN----LGLRTALIVTPVN-VL 638 (1097)
Q Consensus 564 ~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~----~~~k~~LIV~P~s-Lv 638 (1097)
..++|||.+++..++ .+..+|+...+|.|||+..+..+...+.... .....+|||+|.. |+
T Consensus 50 ~~~~~~Q~~~i~~~~--------------~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~ 115 (242)
T 3fe2_A 50 TEPTAIQAQGWPVAL--------------SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA 115 (242)
T ss_dssp CSCCHHHHHHHHHHH--------------HTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHH
T ss_pred CCCCHHHHHHHHHHh--------------CCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHH
Confidence 358899999987664 2467899999999999886655544433211 1234689999954 88
Q ss_pred hhhHHhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCE
Q 001337 639 HNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDI 718 (1097)
Q Consensus 639 ~qW~~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dl 718 (1097)
.||.+++.++... ..+.+..+.+..... .....+....+|+|+|++.+..+... .......+++
T Consensus 116 ~Q~~~~~~~~~~~--~~~~~~~~~g~~~~~--~~~~~~~~~~~I~v~Tp~~l~~~l~~------------~~~~~~~~~~ 179 (242)
T 3fe2_A 116 QQVQQVAAEYCRA--CRLKSTCIYGGAPKG--PQIRDLERGVEICIATPGRLIDFLEC------------GKTNLRRTTY 179 (242)
T ss_dssp HHHHHHHHHHHHH--TTCCEEEECTTSCHH--HHHHHHHHCCSEEEECHHHHHHHHHH------------TSCCCTTCCE
T ss_pred HHHHHHHHHHHhh--cCceEEEEECCCChH--HHHHHhcCCCCEEEECHHHHHHHHHc------------CCCCcccccE
Confidence 8999999887643 124455444433221 12233345679999999887532110 0011237889
Q ss_pred EEecccchhcccc--hhHHHHHhhh-ccceeeeeccCc
Q 001337 719 LVCDEAHMIKNTR--ADTTQALKQV-KCQRRIALTGSP 753 (1097)
Q Consensus 719 VIiDEAH~iKN~~--S~~~kal~~l-~a~~RllLTGTP 753 (1097)
||+||||++-... ......+..+ .....+++|||+
T Consensus 180 lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 180 LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp EEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCC
T ss_pred EEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeec
Confidence 9999999986532 2333344444 345689999997
No 92
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.00 E-value=3.6e-11 Score=101.60 Aligned_cols=57 Identities=23% Similarity=0.642 Sum_probs=48.3
Q ss_pred cCCCCCcceeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChhhHH
Q 001337 370 KDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLK 432 (1097)
Q Consensus 370 ~d~d~~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~~~~ 432 (1097)
.++|.++.+|.+|+++|+|++||.|+++||..|+.+.+. ..+.+.|+|+.|..++++
T Consensus 3 ~~~d~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~------~~p~g~W~C~~C~~~~~k 59 (61)
T 1mm2_A 3 LGSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLP------EIPNGEWLCPRCTCPALK 59 (61)
T ss_dssp TCSCSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCS------SCCSSCCCCTTTTTTCCT
T ss_pred ccccCCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcC------cCCCCccCChhhcCchhc
Confidence 357888999999999999999999999999999987653 245689999999876543
No 93
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.94 E-value=1.5e-10 Score=104.03 Aligned_cols=52 Identities=29% Similarity=0.664 Sum_probs=44.7
Q ss_pred CCCCcceeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 372 ADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 372 ~d~~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
.+.++++|.+|++||+|++||.|+++||..|+.+.+. ..+.+.|+|+.|...
T Consensus 21 ~d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~------~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQ------DVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCC------CCCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCCCCEEECCCCCCceecccCCCCCC------CCcCCCcCCccccCC
Confidence 4667779999999999999999999999999988753 346789999999754
No 94
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.91 E-value=1.7e-10 Score=97.45 Aligned_cols=58 Identities=16% Similarity=0.518 Sum_probs=47.8
Q ss_pred ccccCCCCCcceeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChhh
Q 001337 367 MHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSL 430 (1097)
Q Consensus 367 ~~~~d~d~~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~~ 430 (1097)
++...++.++.+|.+|+++|+|++||.|+++||..|+.+.+. ..+.+.|+|+.|....
T Consensus 2 ~~~~~~~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~------~~p~g~W~C~~C~~~g 59 (61)
T 2l5u_A 2 PLGSYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDME------KAPEGKWSCPHCEKEG 59 (61)
T ss_dssp CCSCCSSCCCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCC------SCCCSSCCCTTGGGGS
T ss_pred CCCcccCCCCCCCccCCCCCcEEECCCCChhhhhhccCCCCC------CCCCCceECccccccc
Confidence 344556777889999999999999999999999999987642 2457899999997653
No 95
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.82 E-value=6e-10 Score=93.89 Aligned_cols=52 Identities=21% Similarity=0.697 Sum_probs=44.0
Q ss_pred CCCcceeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChhh
Q 001337 373 DCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSL 430 (1097)
Q Consensus 373 d~~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~~ 430 (1097)
|.++.+|.+|+.+|+|++||.|++.||..|+.+.+. ..+.+.|+|+.|....
T Consensus 2 d~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~------~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 2 MIHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLK------TIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCCCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCS------SCCCSCCCCHHHHHHH
T ss_pred CCCCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcC------CCCCCceEChhccChh
Confidence 566789999999999999999999999999987653 2356899999996553
No 96
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.81 E-value=6.7e-10 Score=95.41 Aligned_cols=51 Identities=24% Similarity=0.738 Sum_probs=43.0
Q ss_pred CCCcceeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 373 DCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 373 d~~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
+.++.+|.+|+++|+|++||.|+++||..|+.+.+. ..+.+.|+|+.|..+
T Consensus 5 ~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~------~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLR------EIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCS------SCCSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCCCCEEEcCCCChhhcccccCCCcC------cCCCCCeECccccCc
Confidence 456779999999999999999999999999987653 235689999999643
No 97
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=9.5e-10 Score=91.30 Aligned_cols=52 Identities=21% Similarity=0.707 Sum_probs=44.7
Q ss_pred cCCCCCcceeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecC
Q 001337 370 KDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 427 (1097)
Q Consensus 370 ~d~d~~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 427 (1097)
.+.++++.+|.+|+.+|+|++||.|++.||..|+.+.+. ..+.+.|+|+.|.
T Consensus 3 ~g~~~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~------~~p~g~W~C~~C~ 54 (56)
T 2yql_A 3 SGSSGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLK------TIPKGMWICPRCQ 54 (56)
T ss_dssp CCCCSSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCC------SCCCSSCCCHHHH
T ss_pred CCcCCCCCCCccCCCCCeEEEcCCCCcceECccCCCCcC------CCCCCceEChhhh
Confidence 356788889999999999999999999999999987653 2456899999994
No 98
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.77 E-value=9.2e-10 Score=116.56 Aligned_cols=53 Identities=28% Similarity=0.710 Sum_probs=45.6
Q ss_pred CCCCCcceeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 371 DADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 371 d~d~~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
++|+++++|.+|++||+|+|||.|+++||..|+.+++. ..+.+.|+|+.|...
T Consensus 2 ~~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~------~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 2 DDDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLL------SFPSGDWICTFCRDI 54 (207)
T ss_dssp -CCSSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCS------SCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCC------CCCCCCEEeCceeCc
Confidence 56788899999999999999999999999999987754 245788999999754
No 99
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.73 E-value=2.4e-09 Score=91.64 Aligned_cols=48 Identities=23% Similarity=0.542 Sum_probs=41.0
Q ss_pred CcceeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 375 SECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 375 ~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
....|.+|+++|+||+||.|+++||..|+.+.+. ..+.+.|+|..|..
T Consensus 11 ~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~------~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGT------SRPGTGLRCRSCSG 58 (66)
T ss_dssp TTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTC------CCCSSSCCCTTTTT
T ss_pred CCCCcCCCCCCCeEEECCCCCCceecccCCCccC------cCCCCCEECccccC
Confidence 4458999999999999999999999999987653 34678899999963
No 100
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.70 E-value=2.5e-09 Score=111.10 Aligned_cols=50 Identities=22% Similarity=0.700 Sum_probs=43.0
Q ss_pred CCcceeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 374 CSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 374 ~~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
.++++|.+|++||+|+|||.|+++||..|+.+.+. ..+.+.|+|+.|...
T Consensus 2 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~------~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 2 PNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLT------NFPSGEWICTFCRDL 51 (184)
T ss_dssp CSCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCS------SCCSSCCCCTTTSCS
T ss_pred CCCCccccCCCCCeeeecCCCCcccCccccCCCCC------CCCCCCEECccccCc
Confidence 46779999999999999999999999999987763 345688999999754
No 101
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.61 E-value=1.8e-08 Score=112.92 Aligned_cols=162 Identities=10% Similarity=0.092 Sum_probs=94.4
Q ss_pred ccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchh-hhhhhH
Q 001337 564 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWK 642 (1097)
Q Consensus 564 ~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~s-Lv~qW~ 642 (1097)
..+.|+|..++..++. ..+...|+...+|.|||+..+..+...+.... ....+|||+|.. |..|+.
T Consensus 113 ~~pt~iQ~~ai~~il~------------~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~-~~~~~lil~PtreLa~Q~~ 179 (300)
T 3fmo_B 113 NRPSKIQENALPLMLA------------EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-KYPQCLCLSPTYELALQTG 179 (300)
T ss_dssp CSCCHHHHHHHHHHTS------------SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS-CSCCEEEECSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc------------CCCCeEEEECCCCCCccHHHHHHHHHhhhccC-CCceEEEEcCcHHHHHHHH
Confidence 3467889888765531 12467899999999999865433333222211 123699999955 788988
Q ss_pred HhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEec
Q 001337 643 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 722 (1097)
Q Consensus 643 ~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiD 722 (1097)
+.+.++... ...+.+....+.....+.. ....+|+|+|+..+..+....... ......+||+|
T Consensus 180 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~IlV~TP~~l~~~l~~~~~~-----------~l~~l~~lVlD 242 (300)
T 3fmo_B 180 KVIEQMGKF-YPELKLAYAVRGNKLERGQ-----KISEQIVIGTPGTVLDWCSKLKFI-----------DPKKIKVFVLD 242 (300)
T ss_dssp HHHHHHTTT-STTCCEEEESTTCCCCTTC-----CCCCSEEEECHHHHHHHHTTTCCC-----------CGGGCSEEEET
T ss_pred HHHHHHHhh-CCCcEEEEEeCCccHhhhh-----cCCCCEEEECHHHHHHHHHhcCCC-----------ChhhceEEEEe
Confidence 888776532 1124444444332211110 234579999998874322111000 01267899999
Q ss_pred ccchhcccc---hhHHHHHhhh-ccceeeeeccCccc
Q 001337 723 EAHMIKNTR---ADTTQALKQV-KCQRRIALTGSPLQ 755 (1097)
Q Consensus 723 EAH~iKN~~---S~~~kal~~l-~a~~RllLTGTPiq 755 (1097)
|||++-... ......+..+ .....+++|||+-.
T Consensus 243 Ead~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 243 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED 279 (300)
T ss_dssp THHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCH
T ss_pred CHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCH
Confidence 999986422 1122222333 34568999999843
No 102
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.60 E-value=5.5e-09 Score=108.75 Aligned_cols=49 Identities=27% Similarity=0.672 Sum_probs=42.3
Q ss_pred cceeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChhh
Q 001337 376 ECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSL 430 (1097)
Q Consensus 376 ~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~~ 430 (1097)
+++|.+|++||+|+|||.|+++||..|+.+.+. ..+.+.|.|..|...+
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~------~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQ------DVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCS------SCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcc------cCCCCCCCCcCccCCC
Confidence 569999999999999999999999999987653 3457899999998763
No 103
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.58 E-value=1.2e-08 Score=87.58 Aligned_cols=55 Identities=20% Similarity=0.504 Sum_probs=45.8
Q ss_pred CCCCcceeeeccCC-----CCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 372 ADCSECYCVWCGRS-----SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 372 ~d~~~~~C~~C~~g-----g~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
+++++..|.+|+.+ +.|++||.|+++||..|+.+.+.... +.+.+.|+|..|...
T Consensus 2 ~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~---~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 2 SSGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSV---IDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHH---HHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccc---cCCCCCEECCCCcCc
Confidence 56778899999998 99999999999999999988765431 346789999999654
No 104
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.57 E-value=2.5e-08 Score=123.52 Aligned_cols=113 Identities=18% Similarity=0.200 Sum_probs=98.9
Q ss_pred cceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhccccc
Q 001337 960 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1039 (1097)
Q Consensus 960 ~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n 1039 (1097)
+++..|+..|......+.++|||+......+.|..+|.. .|+.+..++|.++..+|.++++.|..
T Consensus 429 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~------------~gi~~~~lh~~~~~~~R~~~l~~f~~--- 493 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKE------------IGIKVNYLHSEIKTLERIEIIRDLRL--- 493 (661)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHH------------TTCCEEEECTTCCHHHHHHHHHHHHH---
T ss_pred chHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHh------------cCCCeEEEeCCCCHHHHHHHHHHHhc---
Confidence 455666677777666789999999999999999999986 57888999999999999999999986
Q ss_pred ceeeEEEeeeccccccceecccceEEEEcC-----CcCCcccHHHHHHHhhhcc
Q 001337 1040 KRVKCTLISTRAGSLGINLHSANRVIIVDG-----SWNPTYDLQAIYRAWRCMD 1088 (1097)
Q Consensus 1040 ~~v~VlLiStkagg~GLNL~~An~VIi~D~-----~WNP~~~~QAiGRa~RiGQ 1088 (1097)
+.+. +|++|.+.+.|+|++.++.||++|. ++++....|++||++|.+.
T Consensus 494 g~~~-VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~~ 546 (661)
T 2d7d_A 494 GKYD-VLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAE 546 (661)
T ss_dssp TSCS-EEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTSTT
T ss_pred CCeE-EEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCCC
Confidence 3443 5889999999999999999999998 8999999999999999743
No 105
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.45 E-value=3.9e-08 Score=85.37 Aligned_cols=50 Identities=18% Similarity=0.452 Sum_probs=42.0
Q ss_pred CCCCcceeeeccCCC-----CeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 372 ADCSECYCVWCGRSS-----DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 372 ~d~~~~~C~~C~~gg-----~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
.+.++..|.+|++|+ +|++||.|+++||..|+.+.. .+.+.|+|..|..+
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~--------vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--------IPEGQWLCRHCLQS 66 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS--------CCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc--------CCCCCcCCccCcCc
Confidence 455677999999886 999999999999999987652 45789999999654
No 106
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.35 E-value=8.2e-08 Score=87.16 Aligned_cols=52 Identities=25% Similarity=0.701 Sum_probs=43.2
Q ss_pred cceeeeccCC-----CCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 376 ECYCVWCGRS-----SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 376 ~~~C~~C~~g-----g~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
+.+|.+|+.+ +.||+||.|+++||..|+.+.+....+ ..+.+.|+|..|...
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~--~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEV--NDPRLVWYCARCTRQ 72 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHH--HCTTCCCCCHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCccccccc--CCCCCCeeCccccch
Confidence 4489999988 789999999999999999988765432 246789999999654
No 107
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.34 E-value=8.6e-08 Score=86.94 Aligned_cols=48 Identities=19% Similarity=0.506 Sum_probs=40.8
Q ss_pred CCcceeeeccCCC-----CeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 374 CSECYCVWCGRSS-----DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 374 ~~~~~C~~C~~gg-----~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
.++..|.+|+.|| +||+||.|+++||..|+.+.. .+.+.|+|..|...
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--------vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--------IPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--------CCSSCCCCHHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--------cCCCceECccccCc
Confidence 3456999999998 999999999999999987652 45789999999654
No 108
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.33 E-value=1.3e-07 Score=83.35 Aligned_cols=48 Identities=23% Similarity=0.753 Sum_probs=39.4
Q ss_pred Ccceeeecc---CCCCeeeccccccchhhhhhhccchhhhhhhhhhcc-cceeeecCh
Q 001337 375 SECYCVWCG---RSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQAS-CWQCCCCSP 428 (1097)
Q Consensus 375 ~~~~C~~C~---~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~-~W~C~~C~~ 428 (1097)
.+..|.+|+ ++|+|++||.|+++||..|+.+++. ..+.+ .|+|+.|..
T Consensus 25 ~~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~------~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 25 HSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLD------KVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCS------SCCCSSCCCCTTTCC
T ss_pred CCCCCcCcCCcCCCCCEEEcCCCCccccccccCCCcc------CCCCCCCcCCcCccC
Confidence 344899999 5899999999999999999987653 23466 899999963
No 109
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.33 E-value=7.9e-08 Score=78.11 Aligned_cols=45 Identities=31% Similarity=0.851 Sum_probs=37.2
Q ss_pred eeeeccCCC---CeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 378 YCVWCGRSS---DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 378 ~C~~C~~gg---~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
+|.+|+.+| +|++||.|++.||..|+.+.+. ..+.+.|+|..|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~------~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALY------EVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCC------SCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcC------CCCCCcEECcCccc
Confidence 688998666 6999999999999999987542 34568999999964
No 110
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.29 E-value=2e-06 Score=106.21 Aligned_cols=138 Identities=14% Similarity=0.146 Sum_probs=76.8
Q ss_pred chhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhh-h---hhHHhhcccccCCCcccEEEeecc-cchhHHH
Q 001337 596 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVL-H---NWKQEFMKWRPSELKPLRVFMLED-VSRDRRA 670 (1097)
Q Consensus 596 GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv-~---qW~~Ei~k~~p~~~~~l~V~~~~~-~~~~~r~ 670 (1097)
|-|....+|.|||+.+...+...... .+.++||+|+.-+ . +|...+.++++ +.+..+.+ .+...+.
T Consensus 94 G~IaeakTGeGKTLvf~Lp~~L~aL~----G~qv~VvTPTreLA~Qdae~m~~l~~~lG-----Lsv~~i~Gg~~~~~r~ 164 (997)
T 2ipc_A 94 GKIAEMKTGEGKTLVATLAVALNALT----GKGVHVVTVNDYLARRDAEWMGPVYRGLG-----LSVGVIQHASTPAERR 164 (997)
T ss_dssp TSEEECCSTHHHHHHHHHHHHHHHTT----CSCCEEEESSHHHHHHHHHHHHHHHHTTT-----CCEEECCTTCCHHHHH
T ss_pred CceeeccCCCchHHHHHHHHHHHHHh----CCCEEEEeCCHHHHHHHHHHHHHHHHhcC-----CeEEEEeCCCCHHHHH
Confidence 33777889999998654433222111 2479999998744 3 47777777664 45555443 3332222
Q ss_pred HHHHHHHhcCcEEEEeeccccc-cccCcCCcchhhHHHHHHHhcc---CCCEEEecccchhcccchhHHHHHhhhcccee
Q 001337 671 ELLAKWRAKGGVFLIGYTAFRN-LSFGKHVKDRNMAREICHALQD---GPDILVCDEAHMIKNTRADTTQALKQVKCQRR 746 (1097)
Q Consensus 671 ~~l~~~~~~~~VvIitY~~~r~-l~~~~~~~~~~~~~~~~~ll~~---~~dlVIiDEAH~iKN~~S~~~kal~~l~a~~R 746 (1097)
.. ...+|++.|...|.. +........ ...+... +..++|+||+|.+--. .+..-
T Consensus 165 ~a-----y~~DIvyGTpgrlgfDyLrd~m~~~------~~~l~~r~d~~l~~lIIDEaDsmLiD-----------eartP 222 (997)
T 2ipc_A 165 KA-----YLADVTYVTNSELGFDYLRDNMAIS------PDQLVLRHDHPLHYAIIDEVDSILID-----------EARTP 222 (997)
T ss_dssp HH-----HTSSEEEEEHHHHHHHHHHHTSCSS------TTTCCSCSSSSSCEEEETTHHHHTTS-----------STTSC
T ss_pred HH-----cCCCEEEECchhhhhHHHHHhhhcc------hhhcccccCCCcceEEEechHHHHHh-----------CCCCC
Confidence 21 246899998877620 000000000 0011123 6789999999965322 22334
Q ss_pred eeeccCccccchhhhhhhhh
Q 001337 747 IALTGSPLQNNLMEYYCMVD 766 (1097)
Q Consensus 747 llLTGTPiqNnl~El~~Ll~ 766 (1097)
+++|| |+... ..+|..++
T Consensus 223 LIISg-p~~~~-~~lY~~~~ 240 (997)
T 2ipc_A 223 LIISG-PAEKA-TDLYYKMA 240 (997)
T ss_dssp EEEEE-SCSSC-HHHHHHHH
T ss_pred eeeeC-CCccc-hHHHHHHH
Confidence 88999 87766 45554444
No 111
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.29 E-value=1.6e-07 Score=87.84 Aligned_cols=50 Identities=26% Similarity=0.698 Sum_probs=41.0
Q ss_pred cCCCCCcceeeeccCCCCeeecc--ccccchhhhhhhccchhhhhhhhhhcccceeeecC
Q 001337 370 KDADCSECYCVWCGRSSDLVSCK--SCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 427 (1097)
Q Consensus 370 ~d~d~~~~~C~~C~~gg~l~~Cd--~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 427 (1097)
...+.+++||.+|++||+||+|| .||++||..|+. +. ..+.+.|+|+.|.
T Consensus 9 ~~~~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~-------L~-~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLN-------LT-QPPYGKWECPWHQ 60 (107)
T ss_dssp -CCCSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGT-------CS-SCCSSCCCCGGGB
T ss_pred CCcCCCCCCCCcCCCCCcEeEECCCCCCcccccccCc-------CC-cCCCCCEECCCCC
Confidence 34556778999999999999999 799999999985 22 3467899999774
No 112
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=1.7e-07 Score=85.74 Aligned_cols=51 Identities=22% Similarity=0.618 Sum_probs=41.5
Q ss_pred CCCcceeeeccCCCC---eeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 373 DCSECYCVWCGRSSD---LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 373 d~~~~~C~~C~~gg~---l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
.-++..|.+|+.+++ ||+||.|++.||..|+.+++. ..+.+.|+|+.|...
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~------~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLP------EIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCS------SCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcc------cCCCCCcCCccCcCc
Confidence 334558999999885 999999999999999987653 345689999999543
No 113
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.16 E-value=3.5e-07 Score=79.25 Aligned_cols=45 Identities=27% Similarity=0.720 Sum_probs=37.1
Q ss_pred eeeecc---CCCCeeeccccccchhhhhhhccchhhhhhhhhhcc-cceeeecCh
Q 001337 378 YCVWCG---RSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQAS-CWQCCCCSP 428 (1097)
Q Consensus 378 ~C~~C~---~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~-~W~C~~C~~ 428 (1097)
.|.+|+ ++|+|++||.|++.||..||.+++. ..+.+ .|+|+.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~------~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLS------SVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCS------SCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcC------CCCCCCCcCCcCccC
Confidence 566888 5899999999999999999987653 23456 999999964
No 114
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.15 E-value=4.3e-07 Score=95.50 Aligned_cols=47 Identities=28% Similarity=0.752 Sum_probs=35.5
Q ss_pred cceeeeccC---CCCeeeccccccchhhhhhhccchhhhhhhhhhcc-cceeeecCh
Q 001337 376 ECYCVWCGR---SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQAS-CWQCCCCSP 428 (1097)
Q Consensus 376 ~~~C~~C~~---gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~-~W~C~~C~~ 428 (1097)
+..|.+|+. +|.|++||.|+++||..|+.+++. ..+.+ .|+|+.|..
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~------~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLS------SVPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCC------SCCSSSCCCCGGGC-
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcc------cCCCCCCCCCcCCcC
Confidence 448999996 789999999999999999988764 23466 999999964
No 115
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.14 E-value=2.2e-06 Score=92.08 Aligned_cols=156 Identities=13% Similarity=0.053 Sum_probs=85.6
Q ss_pred cccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHh-hhccccceeeEeecchh-hhhhhH
Q 001337 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAM-RSVNLGLRTALIVTPVN-VLHNWK 642 (1097)
Q Consensus 565 ~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l-~~~~~~~k~~LIV~P~s-Lv~qW~ 642 (1097)
.+.+||.+.+..+. .+...++.-.+|.|||.+...++.... .........+|+++|.. +..|..
T Consensus 61 p~~~~q~~~i~~i~--------------~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~ 126 (235)
T 3llm_A 61 PVKKFESEILEAIS--------------QNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVA 126 (235)
T ss_dssp GGGGGHHHHHHHHH--------------HCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHH
T ss_pred ChHHHHHHHHHHHh--------------cCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHH
Confidence 47889998887663 245678899999999976555444332 22222223788888965 445666
Q ss_pred HhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEec
Q 001337 643 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 722 (1097)
Q Consensus 643 ~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiD 722 (1097)
+.+.+.+........-+......... ....+++++|...+... +.. ...++++||+|
T Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~Ivv~Tpg~l~~~--------------l~~-~l~~~~~lVlD 183 (235)
T 3llm_A 127 ERVAFERGEEPGKSCGYSVRFESILP--------RPHASIMFCTVGVLLRK--------------LEA-GIRGISHVIVD 183 (235)
T ss_dssp HHHHHTTTCCTTSSEEEEETTEEECC--------CSSSEEEEEEHHHHHHH--------------HHH-CCTTCCEEEEC
T ss_pred HHHHHHhccccCceEEEeechhhccC--------CCCCeEEEECHHHHHHH--------------HHh-hhcCCcEEEEE
Confidence 66655544322111111111000000 02356888888765431 111 12378999999
Q ss_pred ccchh-cccchh--HHHHH-hhhccceeeeeccCccccc
Q 001337 723 EAHMI-KNTRAD--TTQAL-KQVKCQRRIALTGSPLQNN 757 (1097)
Q Consensus 723 EAH~i-KN~~S~--~~kal-~~l~a~~RllLTGTPiqNn 757 (1097)
|||.. -..... ..+.+ ......+.+++|||+-.+.
T Consensus 184 Eah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 184 EIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHH
T ss_pred CCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHH
Confidence 99973 111111 11222 2223456899999985433
No 116
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.07 E-value=2.2e-06 Score=103.98 Aligned_cols=80 Identities=18% Similarity=0.125 Sum_probs=55.3
Q ss_pred cccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchh-hhhhhHH
Q 001337 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 643 (1097)
Q Consensus 565 ~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~s-Lv~qW~~ 643 (1097)
.+||||.+.+..+++.+. .+..+++-..+|.|||+..+.-+.. ...++||++|+. +..||.+
T Consensus 3 ~~r~~Q~~~~~~v~~~l~----------~~~~~~~~a~TGtGKT~~~l~p~l~-------~~~~v~i~~pt~~l~~q~~~ 65 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLR----------NNFLVALNAPTGSGKTLFSLLVSLE-------VKPKVLFVVRTHNEFYPIYR 65 (551)
T ss_dssp SCCHHHHHHHHHHHHHHH----------TTCEEEEECCTTSSHHHHHHHHHHH-------HCSEEEEEESSGGGHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH----------cCCcEEEECCCCccHHHHHHHHHHh-------CCCeEEEEcCCHHHHHHHHH
Confidence 579999988776655442 3466788889999999765544333 135899999965 7789999
Q ss_pred hhcccccCCCcccEEEeecc
Q 001337 644 EFMKWRPSELKPLRVFMLED 663 (1097)
Q Consensus 644 Ei~k~~p~~~~~l~V~~~~~ 663 (1097)
|+.++... ..+++..+.|
T Consensus 66 ~~~~l~~~--~~~~~~~l~g 83 (551)
T 3crv_A 66 DLTKIREK--RNITFSFLVG 83 (551)
T ss_dssp HHTTCCCS--SCCCEEECCC
T ss_pred HHHHHhhh--cCccEEEEcc
Confidence 99876432 1244554443
No 117
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.07 E-value=7.6e-07 Score=84.70 Aligned_cols=46 Identities=24% Similarity=0.733 Sum_probs=39.0
Q ss_pred eeeeccCCC----CeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 378 YCVWCGRSS----DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 378 ~C~~C~~gg----~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
+|.+|+.+| +|++||.|+++||..|+.+.+. ..+.+.|+|..|.++
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~------~~P~~~W~C~~C~~k 112 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLT------RMPKGMWICQICRPR 112 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCS------SCCSSCCCCTTTSCC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCC------CCCCCCeECCCCCCc
Confidence 799999764 8999999999999999987753 346779999999874
No 118
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=97.98 E-value=1e-06 Score=77.62 Aligned_cols=68 Identities=28% Similarity=0.680 Sum_probs=44.2
Q ss_pred ccceeEEEEecCcccchhhcccccCCCCCcceeeeccCC---CCeeeccccccchhhhhhhccchhhhhhhhhhccc-ce
Q 001337 347 PHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRS---SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASC-WQ 422 (1097)
Q Consensus 347 ~Hp~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~g---g~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~-W~ 422 (1097)
.||.++...|..|++.- +--.....|.+|+.+ +.||+||.|+++||..|+.+++. ..+.+. |+
T Consensus 4 ~~~~~~~~~c~~c~~~~-------~W~C~~C~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~------~~P~g~~W~ 70 (77)
T 3shb_A 4 GSPEFSGPSCKHCKDDV-------NRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLS------SVPSEDEWY 70 (77)
T ss_dssp -----CCCSCTTTTTCT-------TSCCTTTSBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCS------SCCSSSCCC
T ss_pred CCcccCCccccccCCCC-------CCCCCCCcCCccCCCCCCcceeEeCCCCCccCcccCCCccc------CCCCCCceE
Confidence 36666777777775210 011222357788776 67999999999999999987753 234456 99
Q ss_pred eeecC
Q 001337 423 CCCCS 427 (1097)
Q Consensus 423 C~~C~ 427 (1097)
|+.|.
T Consensus 71 C~~C~ 75 (77)
T 3shb_A 71 CPECR 75 (77)
T ss_dssp CTTTC
T ss_pred CcCcc
Confidence 99995
No 119
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.92 E-value=4.6e-06 Score=100.87 Aligned_cols=108 Identities=18% Similarity=0.205 Sum_probs=61.9
Q ss_pred hhHHHhhh-ccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccceee
Q 001337 965 LLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVK 1043 (1097)
Q Consensus 965 L~eiL~~~-~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~~v~ 1043 (1097)
+.+.|..+ ...+.++|||..+...++.+...|.. +. +.+.|.. .+|.++++.|.. ++.+
T Consensus 372 ~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--------------~~-~~~q~~~--~~~~~~l~~f~~--~~~i- 431 (540)
T 2vl7_A 372 YSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--------------IP-VIEENKK--TRHEEVLELMKT--GKYL- 431 (540)
T ss_dssp HHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--------------SC-EEESTTT--CCHHHHHHHHHT--SCCE-
T ss_pred HHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--------------Cc-eEecCCC--CcHHHHHHHHhc--CCeE-
Confidence 44444433 23467899999998888887766642 22 3444543 478999999987 2223
Q ss_pred EEEeeeccccccceecc----cceEEEEcCCcCCc------------------------------ccHHHHHHHhhhccc
Q 001337 1044 CTLISTRAGSLGINLHS----ANRVIIVDGSWNPT------------------------------YDLQAIYRAWRCMDK 1089 (1097)
Q Consensus 1044 VlLiStkagg~GLNL~~----An~VIi~D~~WNP~------------------------------~~~QAiGRa~RiGQk 1089 (1097)
+|.+.+...++|||+++ +..||++..|+-+. ...|++||+.|--+.
T Consensus 432 l~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D 511 (540)
T 2vl7_A 432 VMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPND 511 (540)
T ss_dssp EEEEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTC
T ss_pred EEEEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCc
Confidence 22337789999999997 78899999886443 135899999886554
Q ss_pred ccc
Q 001337 1090 QSQ 1092 (1097)
Q Consensus 1090 K~V 1092 (1097)
+-+
T Consensus 512 ~g~ 514 (540)
T 2vl7_A 512 YVK 514 (540)
T ss_dssp CCE
T ss_pred cEE
Confidence 443
No 120
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.90 E-value=1.3e-06 Score=82.96 Aligned_cols=45 Identities=24% Similarity=0.740 Sum_probs=37.8
Q ss_pred eeeeccCCCC---eeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 378 YCVWCGRSSD---LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 378 ~C~~C~~gg~---l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
+|.+|+.+|+ ++.||.|++.||..|+.+++. ..+.+.|+|+.|..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~------~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMK------SVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCS------SCCSSCCCCHHHHC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccc------cCCCCCcCCcCCcC
Confidence 6889999887 999999999999999987653 23568999999953
No 121
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.89 E-value=3.1e-06 Score=80.34 Aligned_cols=50 Identities=24% Similarity=0.691 Sum_probs=41.7
Q ss_pred CCCCcceeeeccCCCCe---eeccccccchhhhhhhccchhhhhhhhhhcccceeeecC
Q 001337 372 ADCSECYCVWCGRSSDL---VSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 427 (1097)
Q Consensus 372 ~d~~~~~C~~C~~gg~l---~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 427 (1097)
.+.++++|.+|+++|++ ++|+.|+++||..||.+.+.+ .+.+.|+|+.|.
T Consensus 3 ~~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~------~~~~~W~C~~C~ 55 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTP------LKRAGWQCPECK 55 (111)
T ss_dssp CCCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCT------TTSTTCCCTTTC
T ss_pred CCCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcccc------ccccCccCCcCC
Confidence 35678899999999998 999999999999999876522 246789999885
No 122
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.88 E-value=2.6e-06 Score=81.20 Aligned_cols=46 Identities=24% Similarity=0.748 Sum_probs=38.5
Q ss_pred eeeeccC---CCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 378 YCVWCGR---SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 378 ~C~~C~~---gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
+|.+|+. +|+|++||.|++.||..|+.+++. ..+.+.|+|+.|...
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~------~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVA------EPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCS------SCCSSCCCCHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCcc------CCCCCCeECccccch
Confidence 6889987 689999999999999999987653 345789999999543
No 123
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=97.84 E-value=4.1e-06 Score=77.53 Aligned_cols=46 Identities=15% Similarity=0.503 Sum_probs=36.9
Q ss_pred eeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChhh
Q 001337 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSL 430 (1097)
Q Consensus 378 ~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~~ 430 (1097)
.|..|.++|.+|+||.|++.||..|+.+.... .+ +.|.|+.|.|++
T Consensus 32 iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~------~p-~~w~C~~C~~~~ 77 (98)
T 2lv9_A 32 ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQH------IP-DTYLCERCQPRN 77 (98)
T ss_dssp TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTS------CC-SSBCCTTTSSSC
T ss_pred ECCCccCCCcEEEcCCCCCcCcCcCCCCCccC------CC-CCEECCCCcCCC
Confidence 57777789999999999999999998765321 12 479999998764
No 124
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.78 E-value=3.9e-06 Score=73.01 Aligned_cols=58 Identities=19% Similarity=0.563 Sum_probs=44.6
Q ss_pred CCCCCcceeeecc--CCCCeeeccccccchhhhhhhcc-chhhh-----hhhhhhcccceeeecCh
Q 001337 371 DADCSECYCVWCG--RSSDLVSCKSCKTLFCTTCVKRN-ISEAC-----LSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 371 d~d~~~~~C~~C~--~gg~l~~Cd~C~~~fc~~Cl~~~-~~~~~-----~~~~~~~~~W~C~~C~~ 428 (1097)
..-.+|+.|.+|. ..++|+.|..|+|+||..|+.+. ..... +........|.||-|+.
T Consensus 10 e~~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred cCCCCCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 3445788999999 89999999999999999999974 22222 11234678899999954
No 125
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=97.76 E-value=4.6e-06 Score=73.35 Aligned_cols=51 Identities=20% Similarity=0.530 Sum_probs=39.6
Q ss_pred CCCcceeeeccCC---CCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 373 DCSECYCVWCGRS---SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 373 d~~~~~C~~C~~g---g~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
+....||.+|+.+ +.+|+||.|++.||..|+.+...+ .+.+.|+|+.|..+
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~------~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAP------PEEMQWFCPKCANK 68 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCC------CSSSCCCCTTTHHH
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccC------CCCCCEEChhccCc
Confidence 3445689999875 479999999999999998765422 23478999999654
No 126
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=97.71 E-value=8.8e-06 Score=70.58 Aligned_cols=47 Identities=26% Similarity=0.720 Sum_probs=37.4
Q ss_pred CCcceeeeccC--CCCeeeccc--cc-cchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 374 CSECYCVWCGR--SSDLVSCKS--CK-TLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 374 ~~~~~C~~C~~--gg~l~~Cd~--C~-~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
....|| +|+. .|++|+||+ |+ .-||..|+... ..+.+.|+|+.|..+
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~--------~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLT--------TKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCS--------SCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcC--------cCCCCCEECCCCCcc
Confidence 345699 8997 799999999 99 59999998632 234588999999654
No 127
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=97.69 E-value=4.9e-06 Score=69.50 Aligned_cols=46 Identities=24% Similarity=0.719 Sum_probs=36.4
Q ss_pred CCcceeeeccC--CCCeeeccc--cc-cchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 374 CSECYCVWCGR--SSDLVSCKS--CK-TLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 374 ~~~~~C~~C~~--gg~l~~Cd~--C~-~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
....|| +|++ +|++|+||+ |+ .-||..|+... ..+.+.|+|+.|..
T Consensus 7 ~e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl~--------~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDLT--------TKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCS--------SCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCcc--------cCCCCCEECcCccC
Confidence 345599 8997 899999999 99 59999998633 23457899999954
No 128
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.62 E-value=1.3e-05 Score=72.67 Aligned_cols=47 Identities=26% Similarity=0.720 Sum_probs=37.5
Q ss_pred CCcceeeeccC--CCCeeeccc--cc-cchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 374 CSECYCVWCGR--SSDLVSCKS--CK-TLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 374 ~~~~~C~~C~~--gg~l~~Cd~--C~-~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
....|| +|++ .|++|+||+ |+ .-||..|+... ..+.+.|+|+.|..+
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~--------~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLT--------TKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCS--------SCCCSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcC--------cCCCCCEECcCccCc
Confidence 445699 9997 899999999 98 58999998633 224588999999654
No 129
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=97.62 E-value=7.5e-06 Score=68.66 Aligned_cols=45 Identities=27% Similarity=0.764 Sum_probs=36.1
Q ss_pred CcceeeeccC--CCCeeeccc--cc-cchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 375 SECYCVWCGR--SSDLVSCKS--CK-TLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 375 ~~~~C~~C~~--gg~l~~Cd~--C~-~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
...|| +|++ +|++|.||+ |+ ..||..|+... ..+.+.|+|+.|..
T Consensus 9 e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvgl~--------~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLT--------TKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCS--------SCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCCCC--------cCCCCCEECcCccC
Confidence 45689 8987 899999999 88 79999998632 23458999999954
No 130
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.61 E-value=7.8e-06 Score=68.98 Aligned_cols=45 Identities=24% Similarity=0.744 Sum_probs=36.6
Q ss_pred CcceeeeccC--CCCeeeccc--cc-cchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 375 SECYCVWCGR--SSDLVSCKS--CK-TLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 375 ~~~~C~~C~~--gg~l~~Cd~--C~-~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
...|| +|++ +|++|+||+ |+ +-||..|+... ..+.+.|+|+.|..
T Consensus 10 e~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl~--------~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSLT--------YKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCS--------SCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCCCCeeeeeCCCCCcccEecccCCcC--------cCCCCCEECcCccc
Confidence 35589 8998 899999999 88 99999998643 22458999999954
No 131
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.32 E-value=5.6e-05 Score=71.96 Aligned_cols=47 Identities=32% Similarity=0.770 Sum_probs=35.3
Q ss_pred eeeeccCC----------CCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecC
Q 001337 378 YCVWCGRS----------SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 427 (1097)
Q Consensus 378 ~C~~C~~g----------g~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 427 (1097)
+|.+|.++ |+|++|+.|+++||..||....... ...+.+.|+|+.|.
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~---~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMT---EAVKTYKWQCIECK 59 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHH---HHHHHTTCCCGGGC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhh---hccCCCccCccccC
Confidence 67777554 5999999999999999997553211 23467889998884
No 132
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.26 E-value=6.5e-05 Score=77.04 Aligned_cols=51 Identities=22% Similarity=0.527 Sum_probs=37.6
Q ss_pred CCCcceeeeccCC----CCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 373 DCSECYCVWCGRS----SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 373 d~~~~~C~~C~~g----g~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
+....|| +|+.+ |..++||.|++-||..|+.....+ ....+.|.|+.|.+.
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~-----~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSE-----AELIDEYVCPQCQST 59 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHH-----HTTCSSCCCHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhh-----ccCccCeecCCCcch
Confidence 3455699 99864 569999999999999998543211 224578999999765
No 133
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.24 E-value=6.1e-05 Score=68.12 Aligned_cols=46 Identities=28% Similarity=0.813 Sum_probs=35.1
Q ss_pred CCCcceeeeccC--CCCeeeccc--cc-cchhhhhhhccchhhhhhhhhhcccceeee-cC
Q 001337 373 DCSECYCVWCGR--SSDLVSCKS--CK-TLFCTTCVKRNISEACLSDEVQASCWQCCC-CS 427 (1097)
Q Consensus 373 d~~~~~C~~C~~--gg~l~~Cd~--C~-~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~-C~ 427 (1097)
+....|| +|+. .|++|+||+ |+ .-||..||... ..+.+.|+|+. |.
T Consensus 23 ~~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVgl~--------~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 23 NQEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVGLK--------QAPKGKWYCSKDCK 74 (90)
T ss_dssp -CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSSCS--------SCTTSCCCSSHHHH
T ss_pred CCCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCCCC--------cCCCCCccCChhhc
Confidence 3445699 8984 789999999 66 79999998643 22357999999 84
No 134
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.24 E-value=0.00015 Score=88.90 Aligned_cols=72 Identities=19% Similarity=0.192 Sum_probs=51.0
Q ss_pred cccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchh-hhhhhHH
Q 001337 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 643 (1097)
Q Consensus 565 ~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~s-Lv~qW~~ 643 (1097)
+.||+|.+.+.-+++.+. .+..+++...+|+|||+..+..+...+.. ..++++|++|+. +..|+.+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~----------~~~~~~~~apTGtGKT~a~l~p~l~~~~~---~~~kvli~t~T~~l~~Qi~~ 69 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQ----------KSYGVALESPTGSGKTIMALKSALQYSSE---RKLKVLYLVRTNSQEEQVIK 69 (620)
T ss_dssp --CHHHHHHHHHHHHHHH----------HSSEEEEECCTTSCHHHHHHHHHHHHHHH---HTCEEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH----------cCCCEEEECCCCCCHHHHHHHHHHHhhhh---cCCeEEEECCCHHHHHHHHH
Confidence 468999987776655442 35678999999999998766655444332 135899999965 7789999
Q ss_pred hhcccc
Q 001337 644 EFMKWR 649 (1097)
Q Consensus 644 Ei~k~~ 649 (1097)
|+.++.
T Consensus 70 el~~l~ 75 (620)
T 4a15_A 70 ELRSLS 75 (620)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 987653
No 135
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=96.91 E-value=0.00024 Score=67.38 Aligned_cols=47 Identities=30% Similarity=0.699 Sum_probs=35.0
Q ss_pred eeeecc---------CCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecC
Q 001337 378 YCVWCG---------RSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 427 (1097)
Q Consensus 378 ~C~~C~---------~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 427 (1097)
+|.+|. ++|+||.|+.|++.||..||... +... ...+.+.|+|+-|.
T Consensus 7 ~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~--~~~~-~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 7 ICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFS--PELT-VRVKALRWQCIECK 62 (112)
T ss_dssp SBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCC--HHHH-HHHHTSCCCCTTTC
T ss_pred cccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCC--HHHH-HHhhccccccccCC
Confidence 666663 46799999999999999998642 2222 24467899999985
No 136
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.71 E-value=0.00047 Score=58.48 Aligned_cols=52 Identities=25% Similarity=0.535 Sum_probs=39.7
Q ss_pred CCCcceeeeccC----CCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 373 DCSECYCVWCGR----SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 373 d~~~~~C~~C~~----gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
+....||.+|+. ++..|.||.|..=||..|+.....+ ....+.|.|..|.++
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~-----~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPAR-----AEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTG-----GGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhH-----hcCCCcEECCCCcCc
Confidence 445668999984 5789999999999999998655322 122368999999765
No 137
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.56 E-value=0.0047 Score=76.16 Aligned_cols=67 Identities=21% Similarity=0.286 Sum_probs=49.2
Q ss_pred cccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhh-hhhh
Q 001337 563 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV-LHNW 641 (1097)
Q Consensus 563 ~~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sL-v~qW 641 (1097)
...|-+.|.+||..++. ...=.|+.-..|+|||.+++.+|..+...+ .++||++|++. +.+-
T Consensus 187 ~~~LN~~Q~~AV~~al~-------------~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~----~~ILv~a~TN~AvD~i 249 (646)
T 4b3f_X 187 NTCLDTSQKEAVLFALS-------------QKELAIIHGPPGTGKTTTVVEIILQAVKQG----LKVLCCAPSNIAVDNL 249 (646)
T ss_dssp STTCCHHHHHHHHHHHH-------------CSSEEEEECCTTSCHHHHHHHHHHHHHHTT----CCEEEEESSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc-------------CCCceEEECCCCCCHHHHHHHHHHHHHhCC----CeEEEEcCchHHHHHH
Confidence 45688999999987653 112357777899999999999888877642 48999999875 4555
Q ss_pred HHhhc
Q 001337 642 KQEFM 646 (1097)
Q Consensus 642 ~~Ei~ 646 (1097)
...+.
T Consensus 250 ~erL~ 254 (646)
T 4b3f_X 250 VERLA 254 (646)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 138
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.29 E-value=0.0012 Score=56.99 Aligned_cols=46 Identities=26% Similarity=0.678 Sum_probs=34.7
Q ss_pred Ccceeeecc--CCCCeeecccc--c-cchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 375 SECYCVWCG--RSSDLVSCKSC--K-TLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 375 ~~~~C~~C~--~gg~l~~Cd~C--~-~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
...||. |. ..|.+|.||+| | .-||..|+.... .+.+.|+|+.|...
T Consensus 5 ~~~yC~-C~~~~~g~MI~CD~cdC~~~WfH~~Cvgl~~--------~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 5 SSGYCI-CNQVSYGEMVGCDNQDCPIEWFHYGCVGLTE--------APKGKWYCPQCTAA 55 (70)
T ss_dssp CCCCST-TSCCCCSSEECCSCTTCSCCCEEHHHHTCSS--------CCSSCCCCHHHHHH
T ss_pred CCeEEE-cCCCCCCCEeEeCCCCCCccCCcccccccCc--------CCCCCEECCCCCcc
Confidence 445774 76 46799999995 3 799999986442 24689999999765
No 139
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.13 E-value=0.0017 Score=56.97 Aligned_cols=54 Identities=20% Similarity=0.488 Sum_probs=38.9
Q ss_pred CCCcceeeeccC---CCCeeeccccccchhhhhhhccchhhhhhhh-hhcccceeeecChh
Q 001337 373 DCSECYCVWCGR---SSDLVSCKSCKTLFCTTCVKRNISEACLSDE-VQASCWQCCCCSPS 429 (1097)
Q Consensus 373 d~~~~~C~~C~~---gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~-~~~~~W~C~~C~~~ 429 (1097)
|.+..|| +|+. ++..|.||.|..=||..|+.....+. ..+ ...+.|.|+.|.++
T Consensus 13 d~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~--~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 13 DPNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARG--RLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CTTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHH--HHHHHHTCCCCCHHHHHH
T ss_pred CCCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhh--hhccCCCCeEECcCCcCc
Confidence 3345688 7885 46899999999999999987653322 112 14578999999754
No 140
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=95.96 E-value=0.0028 Score=56.08 Aligned_cols=51 Identities=22% Similarity=0.598 Sum_probs=37.8
Q ss_pred CCCcceeeeccC----CCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 373 DCSECYCVWCGR----SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 373 d~~~~~C~~C~~----gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
+....|| +|+. ++..|.||.|..=||..|+.....+ ....+.|.|+.|.+.
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~-----~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEEN-----AVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHH-----HTTCSBBCCTTTTTT
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCccccc-----ccCCCeEECCCcccc
Confidence 4445577 7775 6789999999999999998654322 122478999999765
No 141
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=95.77 E-value=0.0022 Score=55.03 Aligned_cols=53 Identities=21% Similarity=0.441 Sum_probs=38.5
Q ss_pred ccCCCCCcceeeeccC---CCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 369 VKDADCSECYCVWCGR---SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 369 ~~d~d~~~~~C~~C~~---gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
.++.+....|| +|+. |+..|.||.|..=||..|+..... ...+.|.|+.|.++
T Consensus 12 ~~~~~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~-------~~~~~~~C~~C~~s 67 (68)
T 3o70_A 12 ENLYFQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKS-------NVPEVFVCQKCRDS 67 (68)
T ss_dssp --CTTTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTT-------SCCSSCCCHHHHTC
T ss_pred ccCCCCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcc-------cCCCcEECCCCCCC
Confidence 45556666788 8884 456999999999999999865532 11368999999653
No 142
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.69 E-value=0.022 Score=69.87 Aligned_cols=66 Identities=20% Similarity=0.335 Sum_probs=45.8
Q ss_pred ccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhh-hhhH
Q 001337 564 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVL-HNWK 642 (1097)
Q Consensus 564 ~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv-~qW~ 642 (1097)
..|-+.|.+++..++. ..-.++.-..|+|||.++..++..+... ...++||++|++.. .+-.
T Consensus 179 ~~ln~~Q~~av~~~l~--------------~~~~li~GppGTGKT~~~~~~i~~l~~~---~~~~ilv~a~tn~A~~~l~ 241 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ--------------RPLSLIQGPPGTGKTVTSATIVYHLARQ---GNGPVLVCAPSNIAVDQLT 241 (624)
T ss_dssp CCCCHHHHHHHHHHHT--------------CSEEEEECCTTSCHHHHHHHHHHHHHTS---SSCCEEEEESSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc--------------CCCeEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEEEeCcHHHHHHHH
Confidence 3578899998876531 2345677789999999888887766542 23589999998754 4444
Q ss_pred Hhhc
Q 001337 643 QEFM 646 (1097)
Q Consensus 643 ~Ei~ 646 (1097)
..+.
T Consensus 242 ~~l~ 245 (624)
T 2gk6_A 242 EKIH 245 (624)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 143
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.50 E-value=0.023 Score=71.55 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=42.0
Q ss_pred cccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhhh-hhHH
Q 001337 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH-NWKQ 643 (1097)
Q Consensus 565 ~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv~-qW~~ 643 (1097)
.|-+.|.+++..++. ..-.++.-..|+|||.++..++..+... ...++||++|++... +-..
T Consensus 356 ~Ln~~Q~~Av~~~l~--------------~~~~lI~GppGTGKT~ti~~~i~~l~~~---~~~~ilv~a~tn~A~~~l~~ 418 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQ--------------RPLSLIQGPPGTGKTVTSATIVYHLARQ---GNGPVLVCAPSNIAVDQLTE 418 (800)
T ss_dssp CCCHHHHHHHHHHHT--------------SSEEEEECCTTSCHHHHHHHHHHHHHTT---CSSCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcc--------------CCeEEEEcCCCCCHHHHHHHHHHHHHHc---CCCcEEEEcCcHHHHHHHHH
Confidence 355666666654421 2345777889999999888888776543 235899999987543 4333
Q ss_pred hh
Q 001337 644 EF 645 (1097)
Q Consensus 644 Ei 645 (1097)
.+
T Consensus 419 ~l 420 (800)
T 2wjy_A 419 KI 420 (800)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 144
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.026 Score=71.16 Aligned_cols=66 Identities=17% Similarity=0.251 Sum_probs=43.9
Q ss_pred cccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhh-hhhHH
Q 001337 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVL-HNWKQ 643 (1097)
Q Consensus 565 ~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv-~qW~~ 643 (1097)
.|-+.|.++|..++ ...-.++--..|+|||.++..++..+... ...++||++|++.. .+-..
T Consensus 360 ~Ln~~Q~~Av~~~l--------------~~~~~lI~GppGTGKT~~i~~~i~~l~~~---~~~~ILv~a~tn~A~d~l~~ 422 (802)
T 2xzl_A 360 QLNSSQSNAVSHVL--------------QRPLSLIQGPPGTGKTVTSATIVYHLSKI---HKDRILVCAPSNVAVDHLAA 422 (802)
T ss_dssp CCCHHHHHHHHHHT--------------TCSEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHHHhC---CCCeEEEEcCcHHHHHHHHH
Confidence 45677777776542 12235677789999999888887766543 23589999998754 44444
Q ss_pred hhcc
Q 001337 644 EFMK 647 (1097)
Q Consensus 644 Ei~k 647 (1097)
.+.+
T Consensus 423 rL~~ 426 (802)
T 2xzl_A 423 KLRD 426 (802)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 145
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=95.30 E-value=0.0035 Score=55.30 Aligned_cols=53 Identities=17% Similarity=0.422 Sum_probs=37.4
Q ss_pred CcceeeeccC---CCCeeecc--ccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 375 SECYCVWCGR---SSDLVSCK--SCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 375 ~~~~C~~C~~---gg~l~~Cd--~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
...|| +|+. .|..|.|| .|..=||..|+...-.+.... ....+.|+|+.|.++
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~-~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGN-PPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSC-SCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEcccccccccc-ccCCCCEECCCCCcc
Confidence 44589 7985 48999999 899999999986553321000 012368999999764
No 146
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=95.26 E-value=0.005 Score=53.84 Aligned_cols=51 Identities=24% Similarity=0.620 Sum_probs=36.6
Q ss_pred CCCcceeeeccC----CCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 373 DCSECYCVWCGR----SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 373 d~~~~~C~~C~~----gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
+....|| +|+. ++..|.||.|..=||..|+.....+ ....+.|.|+.|.+.
T Consensus 7 ~~~~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~-----~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 7 ATVPVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEE-----APDIDIYHCPNCEKT 61 (75)
T ss_dssp CCCCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTT-----GGGBSSCCCHHHHHH
T ss_pred CCCeeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccc-----cCCCCEEECCCCccc
Confidence 3344466 6764 4689999999999999998654321 223468999999765
No 147
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=95.14 E-value=0.0055 Score=57.19 Aligned_cols=51 Identities=24% Similarity=0.576 Sum_probs=36.8
Q ss_pred ceeeeccCC----CCeeecc-ccccchhhhhhhccchhhhhhhh--hhcccceeeecChh
Q 001337 377 CYCVWCGRS----SDLVSCK-SCKTLFCTTCVKRNISEACLSDE--VQASCWQCCCCSPS 429 (1097)
Q Consensus 377 ~~C~~C~~g----g~l~~Cd-~C~~~fc~~Cl~~~~~~~~~~~~--~~~~~W~C~~C~~~ 429 (1097)
..|.+|... |+.+.|| .|..=||..|+... ...+..+ .+.+.|.|+.|..+
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt--~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMT--ESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCC--HHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcC--HHHHHhhccCCCCCEECccccCc
Confidence 467777654 6778787 89999999998655 3333333 35588999999654
No 148
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=95.10 E-value=0.0047 Score=53.56 Aligned_cols=52 Identities=23% Similarity=0.544 Sum_probs=38.6
Q ss_pred CCCCCcceeeeccCC---C-CeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 371 DADCSECYCVWCGRS---S-DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 371 d~d~~~~~C~~C~~g---g-~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
+++....|| +|+.. | ..|.||.|..=||..|+.....+ ...+.|.|+.|.++
T Consensus 11 ~~~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~------~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 11 GVDNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNAD------ALPSKFLCFRCIEL 66 (72)
T ss_dssp SSCSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTS------CCCSCCCCHHHHHH
T ss_pred CCCCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccc------cCCCcEECCCccCC
Confidence 345566789 69853 4 59999999999999998655321 12378999999765
No 149
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.91 E-value=0.017 Score=70.04 Aligned_cols=134 Identities=18% Similarity=0.059 Sum_probs=80.5
Q ss_pred cccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhhhhhH
Q 001337 563 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWK 642 (1097)
Q Consensus 563 ~~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv~qW~ 642 (1097)
...|-+.|..++..+. ...-.++.-..|+|||.++.+++..+... ..++++++|+.......
T Consensus 187 ~~~L~~~Q~~Av~~~~--------------~~~~~~I~G~pGTGKTt~i~~l~~~l~~~----g~~Vl~~ApT~~Aa~~L 248 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLA--------------GHRLVVLTGGPGTGKSTTTKAVADLAESL----GLEVGLCAPTGKAARRL 248 (574)
T ss_dssp TTTCCHHHHHHHHHHT--------------TCSEEEEECCTTSCHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH--------------hCCEEEEEcCCCCCHHHHHHHHHHHHHhc----CCeEEEecCcHHHHHHh
Confidence 3457788998887663 23456778899999998877777665443 25899999988766555
Q ss_pred HhhcccccCCCcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEec
Q 001337 643 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 722 (1097)
Q Consensus 643 ~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiD 722 (1097)
.|... .....++ .+.. ... +.|.. .. . -...+++||||
T Consensus 249 ~e~~~--------~~a~Tih------------~ll~---~~~---~~~~~-----~~-~----------~~~~~dvlIID 286 (574)
T 3e1s_A 249 GEVTG--------RTASTVH------------RLLG---YGP---QGFRH-----NH-L----------EPAPYDLLIVD 286 (574)
T ss_dssp HHHHT--------SCEEEHH------------HHTT---EET---TEESC-----SS-S----------SCCSCSEEEEC
T ss_pred Hhhhc--------ccHHHHH------------HHHc---CCc---chhhh-----hh-c----------ccccCCEEEEc
Confidence 44321 0111111 0000 000 01110 00 0 01268999999
Q ss_pred ccchhcccchhHHHHHhhhccceeeeeccCccccch
Q 001337 723 EAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNL 758 (1097)
Q Consensus 723 EAH~iKN~~S~~~kal~~l~a~~RllLTGTPiqNnl 758 (1097)
|||.+-. ......+..+....+++|.|-|-|..+
T Consensus 287 Easml~~--~~~~~Ll~~~~~~~~lilvGD~~QL~~ 320 (574)
T 3e1s_A 287 EVSMMGD--ALMLSLLAAVPPGARVLLVGDTDQLPP 320 (574)
T ss_dssp CGGGCCH--HHHHHHHTTSCTTCEEEEEECTTSCCC
T ss_pred CccCCCH--HHHHHHHHhCcCCCEEEEEecccccCC
Confidence 9999843 234444555667789999999988543
No 150
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.82 E-value=0.024 Score=66.87 Aligned_cols=64 Identities=13% Similarity=0.156 Sum_probs=46.1
Q ss_pred ccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhhh
Q 001337 564 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH 639 (1097)
Q Consensus 564 ~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv~ 639 (1097)
..|-+.|.+++..+...+. ......++--..|+|||..+.+++..+...+. +.+++++|++...
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~---------~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~---~~il~~a~T~~Aa 87 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIK---------EKKHHVTINGPAGTGATTLTKFIIEALISTGE---TGIILAAPTHAAK 87 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHH---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC---CCEEEEESSHHHH
T ss_pred ccCCHHHHHHHHHHHHHHh---------cCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC---ceEEEecCcHHHH
Confidence 4688899999987754432 11236677888999999888888777765432 4789999987654
No 151
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=94.59 E-value=0.0085 Score=70.80 Aligned_cols=55 Identities=22% Similarity=0.539 Sum_probs=39.9
Q ss_pred ccCCCCCcceeeeccC----CCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 369 VKDADCSECYCVWCGR----SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 369 ~~d~d~~~~~C~~C~~----gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
.++++....|| +|+. +|..|+||.|..=||..|+...-.+ ....+.|.|+.|.+.
T Consensus 30 s~~~~~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~-----~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 30 SAPPPPPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHH-----AVDIDLYHCPNCAVL 88 (488)
T ss_dssp --CCCCCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGG-----GGGEEEBCCHHHHHH
T ss_pred CCcCCCCCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCccc-----ccCCCEEECCCCcCC
Confidence 44566666788 7874 6889999999999999998544221 123478999999764
No 152
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=94.15 E-value=0.013 Score=49.69 Aligned_cols=50 Identities=24% Similarity=0.596 Sum_probs=36.5
Q ss_pred cceeeeccCC----CCeeecc-ccccchhhhhhhccchhhhhhhhh--hcccceeeecC
Q 001337 376 ECYCVWCGRS----SDLVSCK-SCKTLFCTTCVKRNISEACLSDEV--QASCWQCCCCS 427 (1097)
Q Consensus 376 ~~~C~~C~~g----g~l~~Cd-~C~~~fc~~Cl~~~~~~~~~~~~~--~~~~W~C~~C~ 427 (1097)
...|.+|... ...|.|| .|.+=||..|+... ...+..+. +.+.|.|+.|.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt--~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMT--ETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCC--HHHHHHHHHCTTEEECCHHHH
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccCCC--HHHHHHhhccCCCcEECcCcc
Confidence 3368888753 4589999 99999999998655 44444443 66799999883
No 153
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=94.11 E-value=0.0083 Score=51.42 Aligned_cols=50 Identities=18% Similarity=0.432 Sum_probs=34.5
Q ss_pred ceeeecc---CCCCeeeccc--cccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 377 CYCVWCG---RSSDLVSCKS--CKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 377 ~~C~~C~---~gg~l~~Cd~--C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
.|| +|+ +.|..|.||+ |..=||..|+...-.+... ....+.|+|+.|..+
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~--~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGES--AEVPPVFYCELCRLS 65 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSC--CCCCSSCCCHHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccc--cCCCCcEECcCccCc
Confidence 467 675 4689999996 9999999998544222211 112357999999654
No 154
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=94.03 E-value=0.046 Score=65.84 Aligned_cols=67 Identities=21% Similarity=0.177 Sum_probs=47.3
Q ss_pred cccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchh-hhhhhHH
Q 001337 565 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 643 (1097)
Q Consensus 565 ~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~s-Lv~qW~~ 643 (1097)
.++|||.+.+.-+.+.+. .+..+|+-..+|.|||+..+..+. .. .+++||++|+. +..||.+
T Consensus 7 ~~r~~Q~~~~~~v~~~~~----------~~~~~~~~a~TGtGKT~~~l~~~~---~~----~~~~~~~~~t~~l~~q~~~ 69 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALK----------HGKTLLLNAKPGLGKTVFVEVLGM---QL----KKKVLIFTRTHSQLDSIYK 69 (540)
T ss_dssp --CCHHHHHHHHHHHHHH----------TTCEEEEECCTTSCHHHHHHHHHH---HH----TCEEEEEESCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH----------cCCCEEEEcCCCCcHHHHHHHHHH---hC----CCcEEEEcCCHHHHHHHHH
Confidence 689999998776554432 356788889999999975443332 11 35899999955 7889999
Q ss_pred hhccc
Q 001337 644 EFMKW 648 (1097)
Q Consensus 644 Ei~k~ 648 (1097)
++.+.
T Consensus 70 ~~~~l 74 (540)
T 2vl7_A 70 NAKLL 74 (540)
T ss_dssp HHGGG
T ss_pred HHHhc
Confidence 99874
No 155
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=93.85 E-value=0.018 Score=70.58 Aligned_cols=85 Identities=14% Similarity=0.034 Sum_probs=55.6
Q ss_pred cccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhh-hhhh
Q 001337 563 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV-LHNW 641 (1097)
Q Consensus 563 ~~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sL-v~qW 641 (1097)
...|-|.|.++|... .+-.++--..|+|||.+++.-+..++.........+|+|+++.- ..+.
T Consensus 7 ~~~Ln~~Q~~av~~~----------------~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~ 70 (647)
T 3lfu_A 7 LDSLNDKQREAVAAP----------------RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEM 70 (647)
T ss_dssp HTTCCHHHHHHHTCC----------------SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHH
T ss_pred hhcCCHHHHHHHhCC----------------CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHH
Confidence 456778888887522 23345566799999999998888887664444468999998664 4455
Q ss_pred HHhhcccccCCCcccEEEeecc
Q 001337 642 KQEFMKWRPSELKPLRVFMLED 663 (1097)
Q Consensus 642 ~~Ei~k~~p~~~~~l~V~~~~~ 663 (1097)
.+.+.+.++.....+.+..+|.
T Consensus 71 ~~rl~~~~~~~~~~~~v~Tfhs 92 (647)
T 3lfu_A 71 RHRIGQLMGTSQGGMWVGTFHG 92 (647)
T ss_dssp HHHHHHHHCSCCTTCEEEEHHH
T ss_pred HHHHHHHhccccCCcEEEcHHH
Confidence 5566655443333455555553
No 156
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.77 E-value=0.037 Score=56.84 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=25.0
Q ss_pred hhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch
Q 001337 597 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 635 (1097)
Q Consensus 597 gILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~ 635 (1097)
.++.-.||.|||..++.++..+... ..+++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~----g~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLG----KKKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT----TCEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEeec
Confidence 3567789999998777776655433 2478888876
No 157
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=93.76 E-value=0.017 Score=59.18 Aligned_cols=50 Identities=16% Similarity=0.551 Sum_probs=34.5
Q ss_pred eeeeccC-------CCCeeeccccccchhhhhhhccchhhhhhhh---hhcccceeeecChh
Q 001337 378 YCVWCGR-------SSDLVSCKSCKTLFCTTCVKRNISEACLSDE---VQASCWQCCCCSPS 429 (1097)
Q Consensus 378 ~C~~C~~-------gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~---~~~~~W~C~~C~~~ 429 (1097)
||.+|+. ++..|+||.|.+=||..|+...- ..+..+ .+...|.|+.|.++
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~--~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSD--EMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCH--HHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCH--HHHHHhhcCCCCCeeECcCCCCC
Confidence 5555552 34599999999999999986543 222212 23458999999765
No 158
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.45 E-value=0.046 Score=66.76 Aligned_cols=44 Identities=27% Similarity=0.314 Sum_probs=33.3
Q ss_pred CCCEEEecccchhcccchhHHHHHhhhccceeeeeccCccccchhh
Q 001337 715 GPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLME 760 (1097)
Q Consensus 715 ~~dlVIiDEAH~iKN~~S~~~kal~~l~a~~RllLTGTPiqNnl~E 760 (1097)
.+++||||||+.+. .......+..+....+++|.|-|-|-.+-+
T Consensus 262 ~~d~lIIDEAsml~--~~~~~~Ll~~l~~~~~liLvGD~~QL~~V~ 305 (608)
T 1w36_D 262 HLDVLVVDEASMID--LPMMSRLIDALPDHARVIFLGDRDQLASVE 305 (608)
T ss_dssp SCSEEEECSGGGCB--HHHHHHHHHTCCTTCEEEEEECTTSGGGTS
T ss_pred CCCEEEEechhhCC--HHHHHHHHHhCCCCCEEEEEcchhhcCCCC
Confidence 68999999999774 233455566667778999999998876544
No 159
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.10 E-value=0.17 Score=53.16 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=25.0
Q ss_pred hhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch
Q 001337 599 LAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 635 (1097)
Q Consensus 599 LADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~ 635 (1097)
+.-+||.|||..+|.++..+... ..++||+.|.
T Consensus 33 itG~MgsGKTT~lL~~a~r~~~~----g~kVli~k~~ 65 (214)
T 2j9r_A 33 ICGSMFSGKSEELIRRVRRTQFA----KQHAIVFKPC 65 (214)
T ss_dssp EECSTTSCHHHHHHHHHHHHHHT----TCCEEEEECC
T ss_pred EECCCCCcHHHHHHHHHHHHHHC----CCEEEEEEec
Confidence 57789999998888877666443 3478888875
No 160
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.05 E-value=0.23 Score=51.36 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=25.6
Q ss_pred hhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch
Q 001337 597 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 635 (1097)
Q Consensus 597 gILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~ 635 (1097)
.++.-.||.|||..++.++..+... ..+++|+.|.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~----g~kV~v~k~~ 45 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIA----KQKIQVFKPE 45 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC----CCEEEEEEec
Confidence 4557789999998888777665433 3578888876
No 161
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.92 E-value=0.11 Score=57.13 Aligned_cols=46 Identities=17% Similarity=0.051 Sum_probs=29.3
Q ss_pred CCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhh
Q 001337 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV 637 (1097)
Q Consensus 592 ~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sL 637 (1097)
..+.+.+|.-+.|+|||..|-++...+.........+++.+-+..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 3455688999999999988887776654433222234555444433
No 162
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=91.75 E-value=0.03 Score=65.25 Aligned_cols=40 Identities=18% Similarity=0.519 Sum_probs=30.9
Q ss_pred CCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 385 SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 385 gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
+|..|+||.|..=||..|+...-.+ ....+.|.|+.|.++
T Consensus 17 ~~~MIqCD~C~~WfH~~CVgi~~~~-----~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 17 TRFMIECDMCQDWFHGSCVGVEEEK-----AADIDLYHCPNCEVL 56 (447)
T ss_dssp TSCEEECTTTCCEEEHHHHTCCHHH-----HTTEEECCCHHHHHH
T ss_pred CCCeEEcCCCCcccccccCCcCccc-----ccCCCEEECCCCccc
Confidence 6899999999999999998544211 123478999999765
No 163
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.52 E-value=0.23 Score=52.55 Aligned_cols=38 Identities=24% Similarity=0.141 Sum_probs=27.0
Q ss_pred ccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch
Q 001337 594 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 635 (1097)
Q Consensus 594 ~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~ 635 (1097)
+.=.++.-+||.|||..++.++..+... ..+++++.|.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~----g~kVli~~~~ 49 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA----DVKYLVFKPK 49 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT----TCCEEEEEEC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc----CCEEEEEEec
Confidence 3344557889999998888887766443 2477888774
No 164
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=91.20 E-value=0.07 Score=62.65 Aligned_cols=84 Identities=20% Similarity=0.260 Sum_probs=45.2
Q ss_pred cceeeccccceEEEeeccceeEEEEecCcccchhhcccccCCCCCcceeeeccCCCCeeeccccccchhhhhhhccchhh
Q 001337 331 EKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEA 410 (1097)
Q Consensus 331 ~~~~C~~Cg~~~~~~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~ 410 (1097)
+...|-.||+.-++..... |+---|+.=...++++.-.+...+ .+...|+||.|..=||..|+...-..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~kk~~~~~n---------~~~~mI~CD~C~~WfH~~CVgi~~~~- 79 (528)
T 3pur_A 11 ESDRCGGCGKFTHEDDLIA-LEEEKKKEKEKPLMSKKKSHHHKK---------NDFQWIGCDSCQTWYHFLCSGLEQFE- 79 (528)
T ss_dssp CSCCCTTTCCCC--------------------CCSCCCTTTTTT---------STTSEEECTTTCCEEEGGGTTCCGGG-
T ss_pred ccchhhcccCCCchhhHHH-HHHHhhhhhhhccccccccccCCC---------cCCCEEECCCCCcCCCCcCCCCChhH-
Confidence 5678999998755432222 222224433334444443333221 45678999999999999998654221
Q ss_pred hhhhhhhcccceeeecChh
Q 001337 411 CLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 411 ~~~~~~~~~~W~C~~C~~~ 429 (1097)
....+.|+|+.|.+.
T Consensus 80 ----a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 80 ----YYLYEKFFCPKCVPH 94 (528)
T ss_dssp ----TTTEEECCCTTTHHH
T ss_pred ----hcCCCeEECcCCcCC
Confidence 223578999999764
No 165
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=90.97 E-value=0.13 Score=48.03 Aligned_cols=76 Identities=18% Similarity=0.368 Sum_probs=48.6
Q ss_pred cceeeccccceEEEeeccceeEEEEec--CcccchhhcccccC--CCCCccee-----eeccCCCCeeeccccccchhhh
Q 001337 331 EKFYCTACNNVAIEVHPHPILNVIVCK--DCKCLLEKKMHVKD--ADCSECYC-----VWCGRSSDLVSCKSCKTLFCTT 401 (1097)
Q Consensus 331 ~~~~C~~Cg~~~~~~~~Hp~l~~~~C~--~C~~~~~~~~~~~d--~d~~~~~C-----~~C~~gg~l~~Cd~C~~~fc~~ 401 (1097)
....|..|+.. . ..+.|. .|...|+-.-.... +.|.. || ..|+.... +.|..||++||..
T Consensus 14 ~~~~C~~C~~~-G--------~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W-~Cp~c~C~~C~k~~~-~~C~~Cp~sfC~~ 82 (107)
T 4gne_A 14 HEDYCFQCGDG-G--------ELVMCDKKDCPKAYHLLCLNLTQPPYGKW-ECPWHQCDECSSAAV-SFCEFCPHSFCKD 82 (107)
T ss_dssp SCSSCTTTCCC-S--------EEEECCSTTCCCEECTGGGTCSSCCSSCC-CCGGGBCTTTCSBCC-EECSSSSCEECTT
T ss_pred CCCCCCcCCCC-C--------cEeEECCCCCCcccccccCcCCcCCCCCE-ECCCCCCCcCCCCCC-cCcCCCCcchhhh
Confidence 44678888742 1 345677 67666654433222 34433 54 45665555 8999999999999
Q ss_pred hhhccchhhhhhhhhhccccee
Q 001337 402 CVKRNISEACLSDEVQASCWQC 423 (1097)
Q Consensus 402 Cl~~~~~~~~~~~~~~~~~W~C 423 (1097)
|+...+-.. +.+.|.|
T Consensus 83 c~~g~l~~~------~~~~~~c 98 (107)
T 4gne_A 83 HEKGALVPS------ALEGRLC 98 (107)
T ss_dssp TCTTSCEEC------TTTTCEE
T ss_pred ccCCcceec------CCCCcee
Confidence 987665333 4568976
No 166
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=89.23 E-value=0.4 Score=59.14 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=52.6
Q ss_pred ccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchh-hhhhhHHh
Q 001337 566 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQE 644 (1097)
Q Consensus 566 LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~s-Lv~qW~~E 644 (1097)
|-|.|.++|... .+..++--..|.|||.+.+.-+..++.........+|+|+.+. .....++.
T Consensus 3 L~~~Q~~av~~~----------------~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~R 66 (673)
T 1uaa_A 3 LNPGQQQAVEFV----------------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 (673)
T ss_dssp CCHHHHHHHHCC----------------SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHhCC----------------CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHH
Confidence 556777776522 2345566789999999988888877765333346899999765 44455666
Q ss_pred hcccccCC-CcccEEEeecc
Q 001337 645 FMKWRPSE-LKPLRVFMLED 663 (1097)
Q Consensus 645 i~k~~p~~-~~~l~V~~~~~ 663 (1097)
+.+.++.. ...+.|..+|+
T Consensus 67 l~~~l~~~~~~~~~v~Tfhs 86 (673)
T 1uaa_A 67 VGQTLGRKEARGLMISTFHT 86 (673)
T ss_dssp HHHHSCTTTTTTSEEEEHHH
T ss_pred HHHHcCcccccCCEEEeHHH
Confidence 66555432 22356666664
No 167
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=89.07 E-value=0.49 Score=58.23 Aligned_cols=70 Identities=20% Similarity=0.268 Sum_probs=48.9
Q ss_pred ccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchh-hhhhhHHh
Q 001337 566 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQE 644 (1097)
Q Consensus 566 LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~s-Lv~qW~~E 644 (1097)
...+|..++.-+.+.+ .. ......|.--+|.|||+++..++... .+|+|||+|.. +..||..|
T Consensus 13 p~~~Q~~~i~~l~~~~----~~-----~~~~~~l~g~~gs~k~~~~a~~~~~~-------~~~~lvv~~~~~~A~~l~~e 76 (661)
T 2d7d_A 13 PQGDQPKAIEKLVKGI----QE-----GKKHQTLLGATGTGKTFTVSNLIKEV-------NKPTLVIAHNKTLAGQLYSE 76 (661)
T ss_dssp CCTTHHHHHHHHHHHH----HT-----TCSEEEEEECTTSCHHHHHHHHHHHH-------CCCEEEECSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH----hc-----CCCcEEEECcCCcHHHHHHHHHHHHh-------CCCEEEEECCHHHHHHHHHH
Confidence 4568888877554433 11 11123566779999999877666443 25899999955 67899999
Q ss_pred hcccccC
Q 001337 645 FMKWRPS 651 (1097)
Q Consensus 645 i~k~~p~ 651 (1097)
+..|+|.
T Consensus 77 l~~~~~~ 83 (661)
T 2d7d_A 77 FKEFFPN 83 (661)
T ss_dssp HHHHCTT
T ss_pred HHHHcCC
Confidence 9999876
No 168
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=88.98 E-value=0.44 Score=50.63 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=24.3
Q ss_pred hhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch
Q 001337 598 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 635 (1097)
Q Consensus 598 ILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~ 635 (1097)
++.-.||.|||..+|..+...... .++++|+-|.
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~~~----g~kvli~kp~ 56 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQIA----QYKCLVIKYA 56 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTT----TCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC----CCeEEEEeec
Confidence 446689999998877777665433 3578888775
No 169
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=88.00 E-value=0.15 Score=41.11 Aligned_cols=38 Identities=21% Similarity=0.526 Sum_probs=29.9
Q ss_pred CCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 384 RSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 384 ~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
+|+..|.||.|..=||..|+..... ...+.|.|+.|..
T Consensus 14 ~~~~MI~Cd~C~~W~H~~Cvgi~~~-------~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 14 AGRPMIECNECHTWIHLSCAKIRKS-------NVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCEEECTTTCCEEETTTTTCCGG-------GCCSSCCCHHHHT
T ss_pred CCCCEEEcCCCCccccccccCCCcc-------cCCCcEECcCCCC
Confidence 4679999999999999999865532 1136899999953
No 170
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=87.73 E-value=0.25 Score=57.59 Aligned_cols=109 Identities=14% Similarity=0.043 Sum_probs=62.9
Q ss_pred chhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchh-hhhhhHHhhcccccCCCcccEEEeecccchhHHHHHHH
Q 001337 596 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLA 674 (1097)
Q Consensus 596 GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~s-Lv~qW~~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~l~ 674 (1097)
-.++.-..|.|||.....++. .++.|||+|.. +...|.+.+.+.....
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~---------~~~~lVlTpT~~aa~~l~~kl~~~~~~~---------------------- 211 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVN---------FEEDLILVPGRQAAEMIRRRANASGIIV---------------------- 211 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCC---------TTTCEEEESCHHHHHHHHHHHTTTSCCC----------------------
T ss_pred EEEEEcCCCCCHHHHHHHHhc---------cCCeEEEeCCHHHHHHHHHHhhhcCccc----------------------
Confidence 445678899999965554431 14789999965 6778998885431100
Q ss_pred HHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEecccchhcccchhHHHHHhhhccceeeeeccCcc
Q 001337 675 KWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPL 754 (1097)
Q Consensus 675 ~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiDEAH~iKN~~S~~~kal~~l~a~~RllLTGTPi 754 (1097)
....-+.|++.|-.-.. . .-...+++||||||..+- ...+...+..++. .+++|.|=|-
T Consensus 212 ----~~~~~V~T~dsfL~~~~--~------------~~~~~~d~liiDE~sm~~--~~~l~~l~~~~~~-~~vilvGD~~ 270 (446)
T 3vkw_A 212 ----ATKDNVRTVDSFLMNYG--K------------GARCQFKRLFIDEGLMLH--TGCVNFLVEMSLC-DIAYVYGDTQ 270 (446)
T ss_dssp ----CCTTTEEEHHHHHHTTT--S------------SCCCCCSEEEEETGGGSC--HHHHHHHHHHTTC-SEEEEEECTT
T ss_pred ----cccceEEEeHHhhcCCC--C------------CCCCcCCEEEEeCcccCC--HHHHHHHHHhCCC-CEEEEecCcc
Confidence 00112344444321000 0 000148999999999772 2233333334444 8999999997
Q ss_pred cc
Q 001337 755 QN 756 (1097)
Q Consensus 755 qN 756 (1097)
|-
T Consensus 271 Ql 272 (446)
T 3vkw_A 271 QI 272 (446)
T ss_dssp SC
T ss_pred cc
Confidence 73
No 171
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.62 E-value=1.7 Score=48.89 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=21.3
Q ss_pred CCccchhhhhhcCCCcchhhHHHHHHHh
Q 001337 592 DKGLGCILAHTMGLGKTFQVIAFLYTAM 619 (1097)
Q Consensus 592 ~~~~GgILADeMGLGKTlqaIali~~~l 619 (1097)
..+...+|.-+.|+|||..+-+++..+.
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4456788899999999987777665543
No 172
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=86.15 E-value=0.4 Score=49.61 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=23.2
Q ss_pred hhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch
Q 001337 598 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 635 (1097)
Q Consensus 598 ILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~ 635 (1097)
++.-.||+|||...+-.+...... .++++++.|.
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n~~~~----~~kvl~~kp~ 57 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRRFQIA----QYKCLVIKYA 57 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHT----TCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEccc
Confidence 557789999996655555544333 2578888775
No 173
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=85.88 E-value=0.45 Score=49.39 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=24.3
Q ss_pred CCCEEEecccchhccc---chhHHHHHhhhccce----eeeeccCc
Q 001337 715 GPDILVCDEAHMIKNT---RADTTQALKQVKCQR----RIALTGSP 753 (1097)
Q Consensus 715 ~~dlVIiDEAH~iKN~---~S~~~kal~~l~a~~----RllLTGTP 753 (1097)
...+|||||||.+-++ .....+.+..+...+ -++|+|.|
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 4678999999998332 222334455553332 47788877
No 174
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.08 E-value=1.4 Score=45.70 Aligned_cols=26 Identities=19% Similarity=-0.000 Sum_probs=20.7
Q ss_pred CccchhhhhhcCCCcchhhHHHHHHH
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYTA 618 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~~ 618 (1097)
.+.+.+|.-+.|.|||..+-+++..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46788899999999998777666554
No 175
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=84.91 E-value=0.88 Score=50.57 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=28.7
Q ss_pred CccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhhhhhH
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWK 642 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv~qW~ 642 (1097)
...|.+|.-+.|+|||..|-++.... ..+++.|.+..+...|.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~-------~~~~~~v~~~~l~~~~~ 92 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA-------NSTFFSVSSSDLVSKWM 92 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH-------TCEEEEEEHHHHHTTTG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH-------CCCEEEEchHHHhhccc
Confidence 35688999999999998777765542 13555555555555443
No 176
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=84.62 E-value=1.4 Score=48.80 Aligned_cols=27 Identities=22% Similarity=0.033 Sum_probs=20.7
Q ss_pred CccchhhhhhcCCCcchhhHHHHHHHh
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYTAM 619 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~~l 619 (1097)
.+.+.+|.-+.|+|||..+-++...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 356788999999999977766665543
No 177
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=84.17 E-value=0.65 Score=56.38 Aligned_cols=148 Identities=16% Similarity=0.070 Sum_probs=76.0
Q ss_pred ccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchh-hhhhhH
Q 001337 564 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWK 642 (1097)
Q Consensus 564 ~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~s-Lv~qW~ 642 (1097)
..|.|||..-+..|+. ..-.++.-.-|.|||..+.+++...+... +...++++.|.. ......
T Consensus 162 ~~l~p~Q~~i~~~l~~--------------~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~--~~~~i~~va~t~~qA~~~~ 225 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSS--------------KRMTVCNLSRQLGKTTVVAIFLAHFVCFN--KDKAVGILAHKGSMSAEVL 225 (592)
T ss_dssp CCCCHHHHHHHHHHHH--------------CSEEEEEECSSSCHHHHHHHHHHHHHHTS--SSCEEEEEESSHHHHHHHH
T ss_pred CcCCHHHHHHHHhhcc--------------ccEEEEEEcCccChHHHHHHHHHHHHHhC--CCCeEEEEECCHHHHHHHH
Confidence 4689999876554421 12356677889999987655554443322 234789999854 333344
Q ss_pred HhhcccccCC---CcccEEEeecccchhHHHHHHHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEE
Q 001337 643 QEFMKWRPSE---LKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDIL 719 (1097)
Q Consensus 643 ~Ei~k~~p~~---~~~l~V~~~~~~~~~~r~~~l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlV 719 (1097)
..+..++... +.+. ........ . .+ ..+..+... + .+ ...+....++++
T Consensus 226 ~~i~~~i~~~p~~~~~~-~~~~~~~~----i----~~-~nGs~i~~~-------s-----~~------~~~lrG~~~~~~ 277 (592)
T 3cpe_A 226 DRTKQAIELLPDFLQPG-IVEWNKGS----I----EL-DNGSSIGAY-------A-----SS------PDAVRGNSFAMI 277 (592)
T ss_dssp HHHHHHHTTSCTTTSCC-EEEECSSE----E----EE-TTSCEEEEE-------E-----CC------HHHHHHSCCSEE
T ss_pred HHHHHHHHhChHhhccc-cccCCccE----E----Ee-cCCCEEEEE-------e-----CC------CCCccCCCcceE
Confidence 5555544221 1110 00000000 0 00 011111100 0 00 112223478999
Q ss_pred EecccchhcccchhHHHHHhhh-c--cceeeeeccCcccc
Q 001337 720 VCDEAHMIKNTRADTTQALKQV-K--CQRRIALTGSPLQN 756 (1097)
Q Consensus 720 IiDEAH~iKN~~S~~~kal~~l-~--a~~RllLTGTPiqN 756 (1097)
|+||+|.+++.. .++.++... . ...++++++||-..
T Consensus 278 iiDE~~~~~~~~-~l~~~~~~~l~~~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 278 YIEDCAFIPNFH-DSWLAIQPVISSGRRSKIIITTTPNGL 316 (592)
T ss_dssp EEETGGGCTTHH-HHHHHHHHHHSSSSCCEEEEEECCCTT
T ss_pred EEehhccCCchh-HHHHHHHHHhccCCCceEEEEeCCCCc
Confidence 999999987632 445555433 2 24688999999554
No 178
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=83.75 E-value=0.96 Score=51.80 Aligned_cols=157 Identities=16% Similarity=0.120 Sum_probs=80.9
Q ss_pred ccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhh-hhhhH
Q 001337 564 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV-LHNWK 642 (1097)
Q Consensus 564 ~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sL-v~qW~ 642 (1097)
..|.|||+.-+..|.. .+-.++.-.-+.|||..+.+++...... .+...+++++|..- ...+.
T Consensus 162 ~~L~p~Qk~il~~l~~--------------~R~~vi~~sRq~GKT~l~a~~~l~~a~~--~~g~~v~~vA~t~~qA~~vf 225 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSS--------------KRMTVCNLSRQLGKTTVVAIFLAHFVCF--NKDKAVGILAHKGSMSAEVL 225 (385)
T ss_dssp CCCCHHHHHHHHHHHH--------------SSEEEEEECSSSCHHHHHHHHHHHHHHS--SSSCEEEEEESSHHHHHHHH
T ss_pred CCCCHHHHHHHHhhcc--------------CcEEEEEEcCcCChhHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHH
Confidence 4689999876654421 1235677778999998766665543322 12347899999652 23333
Q ss_pred Hhhcccc---cCCCcccEEEeecccchhHHHHHHHHHHhcCcEE-EEeeccccccccCcCCcchhhHHHHHHHhccCCCE
Q 001337 643 QEFMKWR---PSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVF-LIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDI 718 (1097)
Q Consensus 643 ~Ei~k~~---p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~Vv-IitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dl 718 (1097)
+++..++ |..+.+ .+..... . .. .+ ..+..+ +.+- ....+....+++
T Consensus 226 ~~i~~mi~~~P~ll~~-~~~~~~~---~-~I----~f-~nGs~i~~lsa-------------------~~~slrG~~~~~ 276 (385)
T 2o0j_A 226 DRTKQAIELLPDFLQP-GIVEWNK---G-SI----EL-DNGSSIGAYAS-------------------SPDAVRGNSFAM 276 (385)
T ss_dssp HHHHHHHHHSCTTTSC-CEEEECS---S-EE----EE-TTSCEEEEEEC-------------------SHHHHHTSCCSE
T ss_pred HHHHHHHHhChHhhhh-hhccCCc---c-EE----Ee-CCCCEEEEEEC-------------------CCCCccCCCCCE
Confidence 5555443 221111 0100000 0 00 00 011111 1110 011223447899
Q ss_pred EEecccchhcccchhHHHHHhhh-c--cceeeeeccCccccchhhhhhhhhhh
Q 001337 719 LVCDEAHMIKNTRADTTQALKQV-K--CQRRIALTGSPLQNNLMEYYCMVDFV 768 (1097)
Q Consensus 719 VIiDEAH~iKN~~S~~~kal~~l-~--a~~RllLTGTPiqNnl~El~~Ll~fL 768 (1097)
+|+||+|.+++. ...+.++... . ...++++++||-..+ -+|.+....
T Consensus 277 viiDE~a~~~~~-~el~~al~~~ls~~~~~kiiiiSTP~g~n--~fy~l~~~a 326 (385)
T 2o0j_A 277 IYIEDCAFIPNF-HDSWLAIQPVISSGRRSKIIITTTPNGLN--HFYDIWTAA 326 (385)
T ss_dssp EEEESGGGSTTH-HHHHHHHHHHHHSTTCCEEEEEECCCSSS--HHHHHHHHH
T ss_pred EEechhhhcCCC-HHHHHHHHHHhhcCCCCcEEEEeCCCCch--hHHHHHHHH
Confidence 999999999862 2344444432 2 346888899996553 555555443
No 179
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=83.40 E-value=0.46 Score=38.18 Aligned_cols=37 Identities=27% Similarity=0.618 Sum_probs=27.7
Q ss_pred CCCeeecc-ccccchhhhhhhccchhhhhhhhhhcccceeeecC
Q 001337 385 SSDLVSCK-SCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 427 (1097)
Q Consensus 385 gg~l~~Cd-~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 427 (1097)
++..|.|| .|..=||..|+.....+. ..+.|.|+.|.
T Consensus 15 ~~~mI~Cd~~C~~WfH~~Cvgl~~~~~------~~~~~~C~~C~ 52 (52)
T 2kgg_A 15 KVDWVQCDGGCDEWFHQVCVGVSPEMA------ENEDYICINCA 52 (52)
T ss_dssp TCCEEECTTTTCCEEETTTTTCCHHHH------HHSCCCCSCC-
T ss_pred CCcEEEeCCCCCccCcccccCCCcccc------CCCCEECCCCC
Confidence 56689999 799999999986543221 23789999984
No 180
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=82.11 E-value=0.82 Score=51.70 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=20.8
Q ss_pred CccchhhhhhcCCCcchhhHHHHHHH
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYTA 618 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~~ 618 (1097)
...|.+|.-+.|+|||..|-+++..+
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 45688999999999998877776554
No 181
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=81.59 E-value=0.42 Score=39.63 Aligned_cols=48 Identities=15% Similarity=0.292 Sum_probs=31.4
Q ss_pred CCCcceeeeccCCC--Ce-ee--ccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 373 DCSECYCVWCGRSS--DL-VS--CKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 373 d~~~~~C~~C~~gg--~l-~~--Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
+.....|++|-.++ .| .. |...-+.||..||.+.+.. .+.+.|++|..
T Consensus 3 ~~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~--------~~~~~C~~C~~ 55 (60)
T 1vyx_A 3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI--------SRNTACQICGV 55 (60)
T ss_dssp TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH--------HTCSBCTTTCC
T ss_pred CCCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHh--------CCCCccCCCCC
Confidence 34455899996432 23 23 3333459999999888643 24689999964
No 182
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=81.21 E-value=2.4 Score=44.49 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=22.9
Q ss_pred hhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch
Q 001337 598 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 635 (1097)
Q Consensus 598 ILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~ 635 (1097)
++.-+||.|||..+|-.+..+... ..+++|+-|.
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~~----g~kvli~kp~ 65 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIYA----KQKVVVFKPA 65 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHT----TCCEEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc----CCceEEEEec
Confidence 456679999997666665444332 2467888875
No 183
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=81.12 E-value=2.9 Score=41.25 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=20.9
Q ss_pred CccchhhhhhcCCCcchhhHHHHHHHh
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYTAM 619 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~~l 619 (1097)
.+.+.+|.-+.|.|||..+-+++..+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356788999999999987777766543
No 184
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=80.49 E-value=5.2 Score=44.65 Aligned_cols=28 Identities=25% Similarity=0.164 Sum_probs=21.6
Q ss_pred CCccchhhhhhcCCCcchhhHHHHHHHh
Q 001337 592 DKGLGCILAHTMGLGKTFQVIAFLYTAM 619 (1097)
Q Consensus 592 ~~~~GgILADeMGLGKTlqaIali~~~l 619 (1097)
..+.+.+|.-+.|+|||..+-+++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567888999999999987766665543
No 185
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=78.92 E-value=2.7 Score=41.49 Aligned_cols=27 Identities=26% Similarity=0.187 Sum_probs=20.7
Q ss_pred CccchhhhhhcCCCcchhhHHHHHHHh
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYTAM 619 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~~l 619 (1097)
...+.+|.-+.|.|||..+-+++..+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356778899999999987777766543
No 186
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=78.51 E-value=2.7 Score=46.82 Aligned_cols=48 Identities=8% Similarity=0.029 Sum_probs=34.0
Q ss_pred ccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhh
Q 001337 566 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMR 620 (1097)
Q Consensus 566 LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~ 620 (1097)
++|+|.+.+..+...+. .+..+...+|.-+.|.|||..|.+++..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~-------~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQ-------AGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCGGGHHHHHHHHHHHH-------TTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHH-------cCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 57888877765544321 2234456788999999999988888877653
No 187
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=77.60 E-value=0.66 Score=38.98 Aligned_cols=46 Identities=24% Similarity=0.446 Sum_probs=31.3
Q ss_pred CCCcceeeeccC---CCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 373 DCSECYCVWCGR---SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 373 d~~~~~C~~C~~---gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
+..+..|.+|.+ .++-+..-.|...||..||...+.. ...|++|..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----------~~~CP~Cr~ 59 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----------NKKCPICRV 59 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----------CSBCTTTCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----------CCCCcCcCc
Confidence 444557999954 3444444569999999999766432 236999954
No 188
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=77.59 E-value=1.1 Score=54.69 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=44.0
Q ss_pred CCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcccccceeeEEEeee--ccc
Q 001337 975 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLIST--RAG 1052 (1097)
Q Consensus 975 ~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~~v~VlLiSt--kag 1052 (1097)
.+..+|||..+-..++.+...|.. ...- ...+++..+|..++++|. . .+. +|+++ ...
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~~--------------~~~~-~~q~~~~~~~~~ll~~f~-~-~~~---vL~~v~~gsf 506 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVSF--------------EHMK-EYRGIDQKELYSMLKKFR-R-DHG---TIFAVSGGRL 506 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCCS--------------CCEE-CCTTCCSHHHHHHHHHHT-T-SCC---EEEEETTSCC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHh--------------cchh-ccCCCChhHHHHHHHHhc-c-CCc---EEEEEecCce
Confidence 356788888777666666555541 1111 333344568999999999 2 333 46665 488
Q ss_pred cccceecc--cceEEEEcCCcC
Q 001337 1053 SLGINLHS--ANRVIIVDGSWN 1072 (1097)
Q Consensus 1053 g~GLNL~~--An~VIi~D~~WN 1072 (1097)
++|||+++ +..||+.-.|+-
T Consensus 507 ~EGiD~~g~~l~~viI~~lPfp 528 (620)
T 4a15_A 507 SEGINFPGNELEMIILAGLPFP 528 (620)
T ss_dssp --------CCCCEEEESSCCCC
T ss_pred eccccCCCCceEEEEEEcCCCC
Confidence 99999985 678888877653
No 189
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=77.13 E-value=3.6 Score=47.90 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=20.1
Q ss_pred ccchhhhhhcCCCcchhhHHHHHHHh
Q 001337 594 GLGCILAHTMGLGKTFQVIAFLYTAM 619 (1097)
Q Consensus 594 ~~GgILADeMGLGKTlqaIali~~~l 619 (1097)
+.+.+|.-+.|+|||..+-++...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 56788999999999977766665543
No 190
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.10 E-value=1 Score=39.16 Aligned_cols=48 Identities=17% Similarity=0.515 Sum_probs=31.8
Q ss_pred CCCCcceeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 372 ADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 372 ~d~~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
+...+..|.+|.+-=.--.--.|...||..||...+.. .-.|++|...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----------~~~CP~Cr~~ 58 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA----------TPRCYICDQP 58 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH----------CSBCSSSCCB
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC----------CCcCCCcCcc
Confidence 34445579999754332222369999999999766421 4579999744
No 191
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.71 E-value=0.77 Score=39.35 Aligned_cols=43 Identities=26% Similarity=0.598 Sum_probs=30.3
Q ss_pred Ccceeeecc---CCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecC
Q 001337 375 SECYCVWCG---RSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 427 (1097)
Q Consensus 375 ~~~~C~~C~---~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 427 (1097)
.+..|.+|. ..++.+..-.|...||..||...+.. ...|++|.
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----------~~~CP~Cr 67 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----------NRTCPICR 67 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----------CSSCTTTC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----------CCcCcCcC
Confidence 445799998 34444444459999999999876522 24799995
No 192
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=75.69 E-value=1.2 Score=48.20 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=19.8
Q ss_pred CccchhhhhhcCCCcchhhHHHHHH
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYT 617 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~ 617 (1097)
.+.+.+|.-+.|+|||..+-++...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4678899999999999877666543
No 193
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=75.37 E-value=6.1 Score=43.90 Aligned_cols=29 Identities=7% Similarity=-0.093 Sum_probs=23.4
Q ss_pred CCccchhhhhhcCCCcchhhHHHHHHHhh
Q 001337 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMR 620 (1097)
Q Consensus 592 ~~~~GgILADeMGLGKTlqaIali~~~l~ 620 (1097)
..+.+.+|.-.+|+|||.++-+++..+..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56677888999999999888887766543
No 194
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=75.14 E-value=1.5 Score=48.81 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=20.3
Q ss_pred CccchhhhhhcCCCcchhhHHHHHH
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYT 617 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~ 617 (1097)
...|.+|.-+.|+|||..|-+++..
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 4578899999999999877776654
No 195
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=74.35 E-value=2.4 Score=44.90 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=19.6
Q ss_pred CccchhhhhhcCCCcchhhHHHHHH
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYT 617 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~ 617 (1097)
...|.+|.-+.|+|||..|-++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999999877766544
No 196
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=74.05 E-value=2.1 Score=48.20 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=20.0
Q ss_pred CccchhhhhhcCCCcchhhHHHHHH
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYT 617 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~ 617 (1097)
...+.+|.-+.|+|||..|-++...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999877766543
No 197
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=73.51 E-value=9 Score=42.58 Aligned_cols=27 Identities=26% Similarity=0.160 Sum_probs=20.4
Q ss_pred CCccchhhhhhcCCCcchhhHHHHHHH
Q 001337 592 DKGLGCILAHTMGLGKTFQVIAFLYTA 618 (1097)
Q Consensus 592 ~~~~GgILADeMGLGKTlqaIali~~~ 618 (1097)
..+...+|.-+.|.|||..+-+++..+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 456678889999999997766665544
No 198
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.15 E-value=1.5 Score=38.52 Aligned_cols=48 Identities=21% Similarity=0.459 Sum_probs=31.9
Q ss_pred CCCcceeeeccCC----CCeee---ccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 373 DCSECYCVWCGRS----SDLVS---CKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 373 d~~~~~C~~C~~g----g~l~~---Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
+..+..|++|-+. +.|+. |..+-..||..||.+.+.. .+...|++|.-
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~--------~~~~~CplCr~ 66 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS--------SDTRCCELCKY 66 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH--------HCCSBCSSSCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh--------CCCCCCCCCCC
Confidence 4445689999753 34442 1222499999999888643 24578999964
No 199
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=72.43 E-value=11 Score=42.11 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=17.9
Q ss_pred chhhhhhcCCCcchhhHHHHHHH
Q 001337 596 GCILAHTMGLGKTFQVIAFLYTA 618 (1097)
Q Consensus 596 GgILADeMGLGKTlqaIali~~~ 618 (1097)
..+|.-+.|.|||..+-+++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68889999999997766655443
No 200
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=71.62 E-value=1.2 Score=35.32 Aligned_cols=43 Identities=23% Similarity=0.505 Sum_probs=30.2
Q ss_pred cceeeeccCC----CCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 376 ECYCVWCGRS----SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 376 ~~~C~~C~~g----g~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
+..|.+|.+. ++....-.|...||..||...+.. ...|++|..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----------~~~CP~Cr~ 51 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE----------GYRCPLCSG 51 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH----------TCCCTTSCC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc----------CCcCCCCCC
Confidence 4478888653 344666679999999999765422 167999963
No 201
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=71.10 E-value=4.7 Score=44.28 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=25.7
Q ss_pred CCCEEEecccchhc-cc-chhHHHHHhhhccceeeeeccCccc
Q 001337 715 GPDILVCDEAHMIK-NT-RADTTQALKQVKCQRRIALTGSPLQ 755 (1097)
Q Consensus 715 ~~dlVIiDEAH~iK-N~-~S~~~kal~~l~a~~RllLTGTPiq 755 (1097)
.+.+||+||+|.+. .. ...+.+.+.......++++|.++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 56789999999995 21 1223333334345667888777654
No 202
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=70.67 E-value=1.3 Score=39.69 Aligned_cols=45 Identities=22% Similarity=0.483 Sum_probs=30.5
Q ss_pred CCcceeeeccC---CCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 374 CSECYCVWCGR---SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 374 ~~~~~C~~C~~---gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
+.+..|.+|.+ .|+.+..-.|...||..||...+.. .-.|++|..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----------~~~CP~Cr~ 85 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----------SGTCPVCRC 85 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----------TCBCTTTCC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----------CCcCcCcCc
Confidence 44568999963 3443443449999999999776532 137999963
No 203
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=70.37 E-value=5.6 Score=40.14 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=18.5
Q ss_pred cchhhhhhcCCCcchhhHHHHHHH
Q 001337 595 LGCILAHTMGLGKTFQVIAFLYTA 618 (1097)
Q Consensus 595 ~GgILADeMGLGKTlqaIali~~~ 618 (1097)
.+.+|.-+.|.|||..+-++...+
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 347889999999998776666554
No 204
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=69.02 E-value=1.5 Score=41.86 Aligned_cols=43 Identities=16% Similarity=0.444 Sum_probs=29.2
Q ss_pred eeeccccccchhhhhhhccchhh-hhhhhhhcccceeeecChhh
Q 001337 388 LVSCKSCKTLFCTTCVKRNISEA-CLSDEVQASCWQCCCCSPSL 430 (1097)
Q Consensus 388 l~~Cd~C~~~fc~~Cl~~~~~~~-~~~~~~~~~~W~C~~C~~~~ 430 (1097)
.+.||.|..=||..|+...-... .+..+.+...|.|+.|.+.+
T Consensus 2 mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 2 MMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred ccccccCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 57999999999999986432111 11222335579999998753
No 205
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=67.72 E-value=2.3 Score=48.46 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=19.7
Q ss_pred CccchhhhhhcCCCcchhhHHHHHH
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYT 617 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~ 617 (1097)
...+.+|.-+.|+|||..|-++...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999877666433
No 206
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=67.60 E-value=2.5 Score=49.22 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=25.2
Q ss_pred CccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhhhhh
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW 641 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv~qW 641 (1097)
...|.+|.-+.|+|||..|-++...+ ...+++.|....++..|
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~------~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA------NNSTFFSISSSDLVSKW 208 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC------CSSEEEEECCC------
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc------CCCCEEEEeHHHHHhhh
Confidence 45788999999999998777766543 11245555444444433
No 207
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=67.22 E-value=1.8 Score=34.44 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=28.8
Q ss_pred ceeeeccCCC----CeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 377 CYCVWCGRSS----DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 377 ~~C~~C~~gg----~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
..|.+|-+.- .+.....|...||..||...+.. ...|++|..
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----------~~~CP~Cr~ 51 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----------HSTCPLCRL 51 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----------CCSCSSSCC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----------CCcCcCCCC
Confidence 3688886442 24555569999999999766532 347999963
No 208
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=66.94 E-value=3 Score=45.70 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=20.3
Q ss_pred CCccchhhhhhcCCCcchhhHHHHHH
Q 001337 592 DKGLGCILAHTMGLGKTFQVIAFLYT 617 (1097)
Q Consensus 592 ~~~~GgILADeMGLGKTlqaIali~~ 617 (1097)
..+.|.+|.-+.|+|||..+-++...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 34678899999999999877666543
No 209
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=66.79 E-value=1.8 Score=37.17 Aligned_cols=46 Identities=22% Similarity=0.435 Sum_probs=30.2
Q ss_pred CCCcceeeeccCC---CCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 373 DCSECYCVWCGRS---SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 373 d~~~~~C~~C~~g---g~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
...+..|.+|.+. +..+.--.|...||..||...+.. ...|++|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----------~~~CP~Cr~ 60 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----------HDSCPVCRK 60 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----------TCSCTTTCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----------CCcCcCcCC
Confidence 3445689999543 333322248999999999766521 247999954
No 210
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=66.32 E-value=11 Score=38.78 Aligned_cols=34 Identities=21% Similarity=0.051 Sum_probs=25.4
Q ss_pred cchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEee
Q 001337 595 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIV 632 (1097)
Q Consensus 595 ~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV 632 (1097)
...++.-..|-|||-.|+++.......+ .+++|+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G----~rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHG----KNVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTT----CCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCC----CeEEEE
Confidence 3456677899999999988887776553 367776
No 211
>1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_Y* 1nwy_Y* 1pnu_Y 1pny_Y 1sm1_Y* 1vor_1 1vou_1 1vow_1 1voy_1 1vp0_1 1xbp_Y* 1yl3_4 2b66_4 2b9n_4 2b9p_4
Probab=65.68 E-value=4.8 Score=34.63 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=31.7
Q ss_pred CcceeeccccceEEEeeccceeEEEEecCcccchhhcccccCCCC
Q 001337 330 SEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADC 374 (1097)
Q Consensus 330 ~~~~~C~~Cg~~~~~~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~ 374 (1097)
.-.|.| +||....---..+-+.+-+|..|+.||.-..-..|..|
T Consensus 11 ~v~~~~-s~g~~f~t~ST~~~i~vdi~s~~HPFyTGkqk~vdt~G 54 (73)
T 1nkw_Y 11 PCKIIY-QGQVVMETMSTRPEIHVDVWSGVHPFWTGEERFLDTEG 54 (73)
T ss_pred EEEEEE-CCCCEEEEcccCCCEEEEECCCCCcCCcCcEEEEeccc
Confidence 356899 89987553334556899999999999976655555544
No 212
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=65.38 E-value=1.7 Score=35.56 Aligned_cols=43 Identities=21% Similarity=0.675 Sum_probs=29.7
Q ss_pred cceeeeccC-------CCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 376 ECYCVWCGR-------SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 376 ~~~C~~C~~-------gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
+..|.+|.+ ++..+..-.|...||..|+...+.. .-.|++|..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----------~~~CP~Cr~ 52 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----------ANTCPTCRK 52 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH----------CSBCTTTCC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc----------CCCCCCCCc
Confidence 446777765 3444456679999999999766432 347999964
No 213
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=64.29 E-value=3.4 Score=44.05 Aligned_cols=25 Identities=28% Similarity=0.231 Sum_probs=19.7
Q ss_pred CccchhhhhhcCCCcchhhHHHHHH
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYT 617 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~ 617 (1097)
...|.+|.-+.|+|||..|-++...
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHH
Confidence 3567889999999999877766544
No 214
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=62.31 E-value=14 Score=36.56 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=20.6
Q ss_pred CccchhhhhhcCCCcchhhHHHHHHHh
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYTAM 619 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~~l 619 (1097)
.+.+.+|.-+.|.|||..+-+++..+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467788899999999977766665543
No 215
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=62.09 E-value=2.4 Score=35.29 Aligned_cols=43 Identities=23% Similarity=0.474 Sum_probs=30.4
Q ss_pred cceeeeccCCCCe-eeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 376 ECYCVWCGRSSDL-VSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 376 ~~~C~~C~~gg~l-~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
+..|.+|.+.-.- ...-.|...||..|+...+.. .-.|++|..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----------~~~CP~Cr~ 48 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ----------NPTCPLCKV 48 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH----------SCSTTTTCC
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC----------cCcCcCCCh
Confidence 3479999876543 344569999999999766421 247999964
No 216
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=61.86 E-value=2.5 Score=39.95 Aligned_cols=64 Identities=19% Similarity=0.556 Sum_probs=43.8
Q ss_pred EecCcccchhhccccc-CCCCCcceeeeccCC-------CCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeec
Q 001337 355 VCKDCKCLLEKKMHVK-DADCSECYCVWCGRS-------SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCC 426 (1097)
Q Consensus 355 ~C~~C~~~~~~~~~~~-d~d~~~~~C~~C~~g-------g~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C 426 (1097)
.|+.|...+....... --+.....|.+|.+. +.....-.|...||..||.+.+.. ...|++|
T Consensus 50 ~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----------~~~CP~C 119 (133)
T 4ap4_A 50 TCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----------ANTCPTC 119 (133)
T ss_dssp BCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH----------CSBCTTT
T ss_pred CCCCCCCcCccccccccccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc----------CCCCCCC
Confidence 6888888777654421 123345579999753 444566679999999999776532 2489999
Q ss_pred Ch
Q 001337 427 SP 428 (1097)
Q Consensus 427 ~~ 428 (1097)
..
T Consensus 120 r~ 121 (133)
T 4ap4_A 120 RK 121 (133)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 217
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=61.76 E-value=1.1 Score=42.27 Aligned_cols=41 Identities=24% Similarity=0.682 Sum_probs=27.4
Q ss_pred CeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 387 DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 387 ~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
.|+.|+.|.+.||..|+....... +. ....+.|.|+.|.|.
T Consensus 74 ~m~~C~~C~~~~H~~C~~~~~~~~-~~-~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 74 KLMECCICNEIVHPGCLQMDGEGL-LN-EELPNCWECPKCYQE 114 (117)
T ss_dssp SCEEETTTCCEECGGGCCSCCCCE-EC-SSSSSEEECTTTC--
T ss_pred ceEEeeecCCeEECCCCCCCcccc-cc-ccCCCCeECCCCcCC
Confidence 388999999999999987543211 11 112345999999876
No 218
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.75 E-value=2 Score=37.56 Aligned_cols=31 Identities=19% Similarity=0.498 Sum_probs=21.8
Q ss_pred eeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 388 LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 388 l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
++.-..|...||..||...+... =.||+|..
T Consensus 42 ~~~~~~C~H~FH~~Ci~~Wl~~~----------~~CP~CR~ 72 (81)
T 2ecl_A 42 VVVWGECNHSFHNCCMSLWVKQN----------NRCPLCQQ 72 (81)
T ss_dssp CEEEETTSCEEEHHHHHHHTTTC----------CBCTTTCC
T ss_pred EEEeCCCCCccChHHHHHHHHhC----------CCCCCcCC
Confidence 33444699999999997765322 17999964
No 219
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.88 E-value=2.8 Score=35.35 Aligned_cols=45 Identities=24% Similarity=0.466 Sum_probs=29.6
Q ss_pred CcceeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 375 SECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 375 ~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
.+..|.+|.+.-.-..--.|...||..||...+.. .-.|++|...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~----------~~~CP~Cr~~ 58 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL----------GKRCALCRQE 58 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC----------SSBCSSSCCB
T ss_pred CCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC----------CCcCcCcCch
Confidence 34579999765332111259999999999765421 2579999754
No 220
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.41 E-value=7.7 Score=34.78 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=40.0
Q ss_pred cceeeeccCCCC-eeeccccccchhhhhhhccchhhhhhhhhhcccceeee--cCh-----h---hHHHHHHHHhhhcCC
Q 001337 376 ECYCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCC--CSP-----S---LLKRLTSELGRAMGS 444 (1097)
Q Consensus 376 ~~~C~~C~~gg~-l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~--C~~-----~---~~~~l~~~~~~~~~~ 444 (1097)
+..|.+|.+--. .+....|..+||..||...+.... .......|++ |.. . |...|...++.....
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~----~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQ----KRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHH----TTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred EeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHcc----CcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 346888886543 444335999999999987764321 1124688999 851 1 344555555555444
No 221
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=59.09 E-value=5 Score=47.38 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=19.7
Q ss_pred CCccchhhhhhcCCCcchhhHHHHH
Q 001337 592 DKGLGCILAHTMGLGKTFQVIAFLY 616 (1097)
Q Consensus 592 ~~~~GgILADeMGLGKTlqaIali~ 616 (1097)
....|.+|.-+.|+|||..|=++..
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHH
Confidence 3456889999999999987766643
No 222
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=58.96 E-value=4.2 Score=34.64 Aligned_cols=46 Identities=24% Similarity=0.642 Sum_probs=30.8
Q ss_pred CcceeeeccCCC-CeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 375 SECYCVWCGRSS-DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 375 ~~~~C~~C~~gg-~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
.+..|.+|.+.= +.+.-..|...||..||...+.. .+.-.|++|..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--------~~~~~CP~Cr~ 60 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE--------SDEHTCPTCHQ 60 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHH--------SSSSCCSSSCC
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHh--------cCCCcCCCCCC
Confidence 345688887543 33343449999999999766432 23467999965
No 223
>3v2d_4 50S ribosomal protein L31; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_3 2hgj_3 2hgu_3 2j03_4 2v47_4 2v49_4 2wdi_4 2wdj_4 2wdl_4 2wdn_4 2wh2_4 2wrj_4 2wrl_4 2wro_4 2wrr_4 2x9s_4 2x9u_4 2xg0_4 2xg2_4 2xqe_4 ...
Probab=58.87 E-value=5.6 Score=34.04 Aligned_cols=45 Identities=22% Similarity=0.507 Sum_probs=27.5
Q ss_pred cCcceeeccccceEEEeeccceeEEEEecCcccchhhcccccCCCC
Q 001337 329 LSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADC 374 (1097)
Q Consensus 329 ~~~~~~C~~Cg~~~~~~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~ 374 (1097)
..-.|.|+ ||....---.-+.+.+-+|..|+.||.-..-..|..|
T Consensus 10 ~~v~v~c~-~g~~f~t~ST~~~i~vdi~S~~HPFyTGkqk~vdt~G 54 (71)
T 3v2d_4 10 VPARIICG-CGNVIETYSTKPEIYVEVCSKCHPFYTGQQRFVDTEG 54 (71)
T ss_dssp EEEEEEET-TSCEEEEEESSSEEEESCCTTTSSSSSCC--------
T ss_pred eEEEEEEC-CCCEEEeeeeccCEEEEecCCCCCCCCCCEEEEcccC
Confidence 34569997 9976443223457899999999999986655455443
No 224
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=58.76 E-value=4.8 Score=43.56 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=19.7
Q ss_pred CccchhhhhhcCCCcchhhHHHHHH
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYT 617 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~ 617 (1097)
.+.+.+|.-+.|.|||..+-++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4578899999999999877666543
No 225
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=58.73 E-value=10 Score=41.23 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=18.7
Q ss_pred chhhhhhcCCCcchhhHHHHHHH
Q 001337 596 GCILAHTMGLGKTFQVIAFLYTA 618 (1097)
Q Consensus 596 GgILADeMGLGKTlqaIali~~~ 618 (1097)
..+|.-+.|.|||..+-++...+
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 48889999999998777776554
No 226
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.37 E-value=3.4 Score=34.58 Aligned_cols=42 Identities=21% Similarity=0.502 Sum_probs=29.9
Q ss_pred CcceeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecC
Q 001337 375 SECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 427 (1097)
Q Consensus 375 ~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 427 (1097)
.+..|.+|.+.-.- .--.|...||..||...+. ....|++|.
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~----------~~~~CP~Cr 55 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD----------RHRNCPICR 55 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC----------CCSSCHHHH
T ss_pred CCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH----------CcCcCCCcC
Confidence 34579999876544 3335999999999976643 246799994
No 227
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=57.26 E-value=3.5 Score=35.65 Aligned_cols=48 Identities=25% Similarity=0.485 Sum_probs=30.9
Q ss_pred cceeeeccCCCC-eeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 376 ECYCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 376 ~~~C~~C~~gg~-l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
+..|.+|.+.-. .+.. .|...||..||...+.... .......|+.|..
T Consensus 19 ~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~----~~~~~~~CP~Cr~ 67 (85)
T 2ecw_A 19 EVTCPICLELLKEPVSA-DCNHSFCRACITLNYESNR----NTDGKGNCPVCRV 67 (85)
T ss_dssp TTSCTTTCSCCSSCEEC-TTSCCBCHHHHHHHHHHSB----CTTSCBCCTTTCC
T ss_pred CCCCcCCChhhCcceeC-CCCCHHHHHHHHHHHHhcc----CCCCCCCCCCCCC
Confidence 447888876532 2222 4999999999976643321 1234688999964
No 228
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=57.23 E-value=8.8 Score=40.99 Aligned_cols=26 Identities=15% Similarity=0.017 Sum_probs=20.5
Q ss_pred CCccchhhhhhcCCCcchhhHHHHHH
Q 001337 592 DKGLGCILAHTMGLGKTFQVIAFLYT 617 (1097)
Q Consensus 592 ~~~~GgILADeMGLGKTlqaIali~~ 617 (1097)
....+.+|.-+.|+|||..|-++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34568888999999999877776654
No 229
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=56.79 E-value=11 Score=41.40 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=19.0
Q ss_pred cchhhhhhcCCCcchhhHHHHHHH
Q 001337 595 LGCILAHTMGLGKTFQVIAFLYTA 618 (1097)
Q Consensus 595 ~GgILADeMGLGKTlqaIali~~~ 618 (1097)
.+.+|.-+.|.|||..+-++...+
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 348889999999998777766554
No 230
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=56.47 E-value=3.8 Score=37.96 Aligned_cols=33 Identities=18% Similarity=0.437 Sum_probs=21.9
Q ss_pred ccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 391 CKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 391 Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
.-.|...||..||...+.... ....-.|++|..
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~-----~~~~~~CP~CR~ 90 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGN-----KDGSLQCPSCKT 90 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTC-----CSSCCBCTTTCC
T ss_pred cCCCCCcccHHHHHHHHHccc-----CCCCCcCCCCCC
Confidence 445899999999987652110 123457999953
No 231
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=56.41 E-value=13 Score=37.70 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=18.1
Q ss_pred cchhhhhhcCCCcchhhHHHHHHH
Q 001337 595 LGCILAHTMGLGKTFQVIAFLYTA 618 (1097)
Q Consensus 595 ~GgILADeMGLGKTlqaIali~~~ 618 (1097)
...+|.-+.|.|||..+-+++..+
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457889999999997766665443
No 232
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=56.38 E-value=2.7 Score=38.29 Aligned_cols=42 Identities=31% Similarity=0.729 Sum_probs=30.1
Q ss_pred eeeeccCCC-CeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 378 YCVWCGRSS-DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 378 ~C~~C~~gg-~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
.|.+|.+.= +.+.|-.|...||..||...+... .-.|++|..
T Consensus 24 ~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~---------~~~CP~Cr~ 66 (100)
T 3lrq_A 24 RCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ---------RAQCPHCRA 66 (100)
T ss_dssp BCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT---------CSBCTTTCC
T ss_pred CCccCCccccCccccCCCCChhhHHHHHHHHHHC---------cCCCCCCCC
Confidence 577776433 456668899999999997665332 267999964
No 233
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=56.12 E-value=2.8 Score=52.05 Aligned_cols=86 Identities=14% Similarity=0.095 Sum_probs=52.9
Q ss_pred ccccccceeeeeehhhHHHHHHHhhhcccCCCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhh-hh
Q 001337 562 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVL-HN 640 (1097)
Q Consensus 562 l~~~LrphQ~~gV~~ml~~~~~sl~~~~~~~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv-~q 640 (1097)
+-..|-|.|.++|... .+..++--..|.|||.+.+.-+++++.........+|+|+.++-. ..
T Consensus 8 ~l~~Ln~~Q~~av~~~----------------~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~E 71 (724)
T 1pjr_A 8 LLAHLNKEQQEAVRTT----------------EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAARE 71 (724)
T ss_dssp HHTTSCHHHHHHHHCC----------------SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHH
T ss_pred HHhhCCHHHHHHHhCC----------------CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHH
Confidence 3446788888887532 234455668999999998888888776533344679999986633 33
Q ss_pred hHHhhcccccCCCcccEEEeecc
Q 001337 641 WKQEFMKWRPSELKPLRVFMLED 663 (1097)
Q Consensus 641 W~~Ei~k~~p~~~~~l~V~~~~~ 663 (1097)
..+.+.+.++.....+.|..+|+
T Consensus 72 m~~Rl~~~l~~~~~~~~v~Tfhs 94 (724)
T 1pjr_A 72 MRERVQSLLGGAAEDVWISTFHS 94 (724)
T ss_dssp HHHHHHHHHGGGGTTSEEEEHHH
T ss_pred HHHHHHHHhcccccCcEEeeHHH
Confidence 44444444332222345555543
No 234
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.85 E-value=4.9 Score=34.65 Aligned_cols=48 Identities=23% Similarity=0.472 Sum_probs=30.0
Q ss_pred ceeeeccCCCC-eeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 377 CYCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 377 ~~C~~C~~gg~-l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
..|.+|.+.-. .+.. .|...||..|+...+... ....+.-.|++|...
T Consensus 20 ~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~----~~~~~~~~CP~Cr~~ 68 (85)
T 2ecv_A 20 VTCPICLELLTQPLSL-DCGHSFCQACLTANHKKS----MLDKGESSCPVCRIS 68 (85)
T ss_dssp CCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHH----HHTTSCCCCTTTCCS
T ss_pred CCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHh----hcCCCCCcCCCCCCc
Confidence 46777765432 1221 599999999998765432 112346789999643
No 235
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.48 E-value=9.8 Score=41.25 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=18.5
Q ss_pred chhhhhhcCCCcchhhHHHHHHH
Q 001337 596 GCILAHTMGLGKTFQVIAFLYTA 618 (1097)
Q Consensus 596 GgILADeMGLGKTlqaIali~~~ 618 (1097)
..+|.-+.|.|||..+-++...+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 38889999999998777766554
No 236
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.41 E-value=4.5 Score=33.07 Aligned_cols=43 Identities=23% Similarity=0.573 Sum_probs=27.6
Q ss_pred cceeeeccCCCC-eeeccccccchhhhhhhccchhhhhhhhhhcccceeeec
Q 001337 376 ECYCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCC 426 (1097)
Q Consensus 376 ~~~C~~C~~gg~-l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C 426 (1097)
+..|.+|.+.=. .+.- .|...||..||...+.. ....-.|++|
T Consensus 20 ~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-------~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQKPVTI-DCGHNFCLKCITQIGET-------SCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHH-------CSSCCCCSCC
T ss_pred CCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHc-------CCCCCcCcCC
Confidence 446888875432 2222 69999999999766532 1234578887
No 237
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=54.96 E-value=3.4 Score=37.97 Aligned_cols=44 Identities=20% Similarity=0.489 Sum_probs=27.4
Q ss_pred eeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 378 ~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
.|.+|.+.=.--.--.|...||..||...+... .+...|++|..
T Consensus 23 ~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-------~~~~~CP~Cr~ 66 (112)
T 1jm7_A 23 ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQK-------KGPSQCPLCKN 66 (112)
T ss_dssp SCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSS-------SSSCCCTTTSC
T ss_pred CCcccChhhcCeEECCCCCHHHHHHHHHHHHhC-------CCCCCCcCCCC
Confidence 577775432211112599999999997664321 34578999954
No 238
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=54.89 E-value=18 Score=42.35 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=18.9
Q ss_pred CccchhhhhhcCCCcchhhHHHHH
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLY 616 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~ 616 (1097)
...|.+|.-++|+|||..+=++..
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999987666554
No 239
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.39 E-value=2.7 Score=34.87 Aligned_cols=43 Identities=23% Similarity=0.495 Sum_probs=26.9
Q ss_pred ceeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 377 CYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 377 ~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
..|.+|.+.-.--.--.|...||..||...+. ...-.|++|..
T Consensus 16 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~---------~~~~~CP~Cr~ 58 (66)
T 2ecy_A 16 YKCEKCHLVLCSPKQTECGHRFCESCMAALLS---------SSSPKCTACQE 58 (66)
T ss_dssp EECTTTCCEESSCCCCSSSCCCCHHHHHHHHT---------TSSCCCTTTCC
T ss_pred CCCCCCChHhcCeeECCCCCHHHHHHHHHHHH---------hCcCCCCCCCc
Confidence 35666654322111136999999999976642 23567999964
No 240
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=54.00 E-value=36 Score=38.16 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=19.2
Q ss_pred Cccchhh--hhhcCCCcchhhHHHHHHH
Q 001337 593 KGLGCIL--AHTMGLGKTFQVIAFLYTA 618 (1097)
Q Consensus 593 ~~~GgIL--ADeMGLGKTlqaIali~~~ 618 (1097)
.+...+| .-+.|.|||..+-.++..+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 3456777 8999999997776666544
No 241
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=53.99 E-value=5.4 Score=32.05 Aligned_cols=41 Identities=22% Similarity=0.508 Sum_probs=26.3
Q ss_pred CcceeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 375 SECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 375 ~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
.+..|.+|.+.=.--.--.|...||..|+.. ..-.|++|..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~-------------~~~~CP~Cr~ 45 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA-------------SGMQCPICQA 45 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS-------------SSSSCSSCCS
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHcc-------------CCCCCCcCCc
Confidence 3446888875432211223899999999754 2346999964
No 242
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=53.79 E-value=3.3 Score=41.27 Aligned_cols=42 Identities=21% Similarity=0.596 Sum_probs=27.3
Q ss_pred eeeeccCCC-CeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 378 YCVWCGRSS-DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 378 ~C~~C~~gg-~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
.|.+|.+.- +.+.+-.|...||..||...+. .+.-.|++|..
T Consensus 56 ~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---------~~~~~CP~Cr~ 98 (165)
T 2ckl_B 56 MCPICLDMLKNTMTTKECLHRFCADCIITALR---------SGNKECPTCRK 98 (165)
T ss_dssp BCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH---------TTCCBCTTTCC
T ss_pred CCcccChHhhCcCEeCCCCChhHHHHHHHHHH---------hCcCCCCCCCC
Confidence 455554322 2344457999999999976653 23567999964
No 243
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=53.75 E-value=4.2 Score=41.07 Aligned_cols=48 Identities=17% Similarity=0.289 Sum_probs=31.3
Q ss_pred eccCCCC----eeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChhh
Q 001337 381 WCGRSSD----LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSL 430 (1097)
Q Consensus 381 ~C~~gg~----l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~~ 430 (1097)
-||+.|+ -+-|+.|.+-||..|+..+.|+- ++ ...--...|-.|.+.+
T Consensus 9 YCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~-lp-~~~fY~F~C~~C~~~g 60 (177)
T 3rsn_A 9 DEENGRQLGEVELQCGICTKWFTADTFGIDTSSC-LP-FMTNYSFHCNVCHHSG 60 (177)
T ss_dssp --CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTC-CT-TCCSEEEECTTTSTTS
T ss_pred EcCCCCCCCceeEeeccccceecHHHhcccccCc-cc-cceeEEEEccccCCCC
Confidence 4666665 56788899999999998665442 11 1112345599998865
No 244
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=53.58 E-value=3.4 Score=35.37 Aligned_cols=44 Identities=7% Similarity=-0.021 Sum_probs=29.5
Q ss_pred cceeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 376 ECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 376 ~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
+..|.+|.+--.--..-.|..+||..||...+.. +.-.|++|..
T Consensus 8 ~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~---------~~~~CP~C~~ 51 (78)
T 1t1h_A 8 YFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA---------GHKTCPKSQE 51 (78)
T ss_dssp SSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT---------TCCBCTTTCC
T ss_pred cCCCCCccccccCCEEcCCCCeecHHHHHHHHHH---------CcCCCCCCcC
Confidence 4468888765432222259999999999766532 3567999964
No 245
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.57 E-value=4.3 Score=34.38 Aligned_cols=45 Identities=20% Similarity=0.378 Sum_probs=28.9
Q ss_pred CCcceeeeccCC---CCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 374 CSECYCVWCGRS---SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 374 ~~~~~C~~C~~g---g~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
..+..|.+|-+. +..+.--.|...||..||...+.. .-.|++|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----------~~~CP~Cr~ 60 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV----------RKVCPLCNM 60 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH----------CSBCTTTCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc----------CCcCCCcCc
Confidence 335579999754 222211149999999999766422 137999954
No 246
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.74 E-value=5.8 Score=45.57 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=34.8
Q ss_pred CCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhhhhhHHh
Q 001337 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQE 644 (1097)
Q Consensus 592 ~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv~qW~~E 644 (1097)
....|.||.-..|+|||+.|=|++... ..+++.|.+..++..|.-|
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~-------~~~f~~v~~s~l~sk~vGe 225 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHT-------DCKFIRVSGAELVQKYIGE 225 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHH-------TCEEEEEEGGGGSCSSTTH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhh-------CCCceEEEhHHhhccccch
Confidence 346899999999999999888776553 2377777777787766544
No 247
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.56 E-value=4.8 Score=35.16 Aligned_cols=46 Identities=20% Similarity=0.432 Sum_probs=29.4
Q ss_pred cceeeeccCCCCe----eeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 376 ECYCVWCGRSSDL----VSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 376 ~~~C~~C~~gg~l----~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
+..|.+|.+.-.- ..--.|...||..|+...+... ...-.|++|..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-------~~~~~CP~Cr~ 64 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS-------INGVRCPFCSK 64 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC-------SSCBCCTTTCC
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC-------CCCcCCCCCCC
Confidence 3467777654321 2222599999999997665322 23578999964
No 248
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=52.31 E-value=3.7 Score=34.28 Aligned_cols=43 Identities=23% Similarity=0.704 Sum_probs=30.2
Q ss_pred cceeeeccC-------CCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 376 ECYCVWCGR-------SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 376 ~~~C~~C~~-------gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
+..|.+|.+ ++.....-.|...||..||...+... =.|++|..
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----------~~CP~Cr~ 59 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----------NTCPTCRK 59 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC----------SBCTTTCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC----------CCCCCCCC
Confidence 346888864 35555667799999999997665321 27999954
No 249
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.93 E-value=5.9 Score=33.28 Aligned_cols=45 Identities=22% Similarity=0.549 Sum_probs=29.7
Q ss_pred cceeeeccCCCC-eeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 376 ECYCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 376 ~~~C~~C~~gg~-l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
+..|.+|.+.-. .+.. .|...||..||...+.. ....-.|++|..
T Consensus 20 ~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~-------~~~~~~CP~Cr~ 65 (73)
T 2ysl_A 20 EVICPICLDILQKPVTI-DCGHNFCLKCITQIGET-------SCGFFKCPLCKT 65 (73)
T ss_dssp CCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCSS-------SCSCCCCSSSCC
T ss_pred CCEeccCCcccCCeEEc-CCCChhhHHHHHHHHHc-------CCCCCCCCCCCC
Confidence 447888875433 2222 79999999999766431 123557999964
No 250
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.72 E-value=5 Score=33.17 Aligned_cols=43 Identities=21% Similarity=0.685 Sum_probs=29.8
Q ss_pred cceeeeccCC-------CCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 376 ECYCVWCGRS-------SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 376 ~~~C~~C~~g-------g~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
+..|.+|.+. +..+.--.|...||..||...+.. .-.|++|..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----------~~~CP~Cr~ 64 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----------ANTCPTCRK 64 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----------CSSCTTTCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----------CCCCCCCCC
Confidence 4468888653 444455679999999999766432 237999963
No 251
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=51.11 E-value=4 Score=43.87 Aligned_cols=43 Identities=14% Similarity=0.339 Sum_probs=28.6
Q ss_pred eeeeccCCC-Ceeeccccccchhhhhhhccchhhhhhhhhhcccceeee--cCh
Q 001337 378 YCVWCGRSS-DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCC--CSP 428 (1097)
Q Consensus 378 ~C~~C~~gg-~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~--C~~ 428 (1097)
.|.+|.+-= +.+..-.|+.+||..||...+. ..+.|.||+ |..
T Consensus 183 ~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~--------~~~~~~CPvtGCr~ 228 (267)
T 3htk_C 183 TCPITCKPYEAPLISRKCNHVFDRDGIQNYLQ--------GYTTRDCPQAACSQ 228 (267)
T ss_dssp BCTTTSSBCSSEEEESSSCCEEEHHHHHHHST--------TCSCEECSGGGCSC
T ss_pred ECcCccCcccCCeeeCCCCCcccHHHHHHHHH--------hCCCCCCCcccccC
Confidence 455555432 3343346889999999976653 235799999 954
No 252
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.88 E-value=5.6 Score=46.20 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=33.9
Q ss_pred CCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhhhhhHHh
Q 001337 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQE 644 (1097)
Q Consensus 592 ~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv~qW~~E 644 (1097)
....|.||.-+.|+|||+.|=|++... ..+++.|.+..++..|.-|
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~-------~~~~~~v~~s~l~sk~~Ge 258 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI-------GANFIFSPASGIVDKYIGE 258 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH-------TCEEEEEEGGGTCCSSSSH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh-------CCCEEEEehhhhccccchH
Confidence 346899999999999999888877654 2366777777777665433
No 253
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=50.60 E-value=20 Score=34.85 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=18.7
Q ss_pred CccchhhhhhcCCCcchhhHHHHHHH
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYTA 618 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~~ 618 (1097)
.+...+|.-+.|.|||..+-++....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35567788899999997666655443
No 254
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=50.38 E-value=6.1 Score=36.88 Aligned_cols=39 Identities=28% Similarity=0.677 Sum_probs=26.3
Q ss_pred eeeeccCCCC-eeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 378 YCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 378 ~C~~C~~gg~-l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
.|.+|.+.-. .+.-..|..+||..||...+. -.|+.|..
T Consensus 24 ~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~------------~~CP~Cr~ 63 (117)
T 1jm7_B 24 RCSRCTNILREPVCLGGCEHIFCSNCVSDCIG------------TGCPVCYT 63 (117)
T ss_dssp SCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT------------TBCSSSCC
T ss_pred CCCCCChHhhCccEeCCCCCHHHHHHHHHHhc------------CCCcCCCC
Confidence 5777765443 222226999999999976643 46999953
No 255
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.33 E-value=6.8 Score=31.15 Aligned_cols=44 Identities=23% Similarity=0.508 Sum_probs=26.6
Q ss_pred cceeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeec
Q 001337 376 ECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCC 426 (1097)
Q Consensus 376 ~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C 426 (1097)
+..|.+|.+.=.--.--.|...||..||...+.. ....-.|++|
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-------~~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEPVIIECGHNFCKACITRWWED-------LERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTS-------SCCSCCCSCC
T ss_pred CCCCccCCcccCccEeCCCCCccCHHHHHHHHHh-------cCCCCCCCCC
Confidence 3468888643221111259999999999766421 1234678877
No 256
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=50.12 E-value=4 Score=35.69 Aligned_cols=18 Identities=0% Similarity=-0.020 Sum_probs=15.1
Q ss_pred cccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 394 CKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 394 C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
|..+||+.| -|+|.+|=-
T Consensus 22 C~~CyCKkC-----------------c~HCq~CF~ 39 (86)
T 1tac_A 22 SNRAHAKKS-----------------AYHSQVAFI 39 (86)
T ss_dssp SSCSSTTTT-----------------TTTCCCSCS
T ss_pred CCCceecch-----------------hhhhhHHHc
Confidence 778899999 599999943
No 257
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=49.82 E-value=3.4 Score=39.95 Aligned_cols=41 Identities=20% Similarity=0.542 Sum_probs=24.9
Q ss_pred eeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 378 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 378 ~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
.|.+|.+.-.-..--.|...||..||...+.. .-.||+|..
T Consensus 55 ~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~----------~~~CP~Cr~ 95 (138)
T 4ayc_A 55 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKR----------KIECPICRK 95 (138)
T ss_dssp BCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT----------CSBCTTTCC
T ss_pred CCcccCcccCCceECCCCCCccHHHHHHHHHc----------CCcCCCCCC
Confidence 46666543321111248999999998755421 235999953
No 258
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=49.54 E-value=5.3 Score=35.35 Aligned_cols=45 Identities=22% Similarity=0.638 Sum_probs=29.6
Q ss_pred cceeeeccCCC-CeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 376 ECYCVWCGRSS-DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 376 ~~~C~~C~~gg-~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
+..|.+|.+-= +.+.-..|..+||..||...+. ..+.-.|++|..
T Consensus 13 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~--------~~~~~~CP~Cr~ 58 (92)
T 3ztg_A 13 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTALL--------ESDEHTCPTCHQ 58 (92)
T ss_dssp TTEETTTTEECSSCEECTTTCCEECHHHHHHHHH--------HCTTCCCTTTCC
T ss_pred CCCCCCCChhhcCceECCCCCCHHHHHHHHHHHH--------hcCCCcCcCCCC
Confidence 44688887432 2333344999999999976542 223468999964
No 259
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=49.08 E-value=4.1 Score=38.41 Aligned_cols=27 Identities=26% Similarity=0.791 Sum_probs=20.2
Q ss_pred ccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 393 SCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 393 ~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
.|...||..||...+. ...-.|+.|..
T Consensus 69 ~CgH~fC~~Ci~~~~~---------~~~~~CP~Cr~ 95 (124)
T 3fl2_A 69 VCQHNVCKDCLDRSFR---------AQVFSCPACRY 95 (124)
T ss_dssp TTSCEEEHHHHHHHHH---------TTCCBCTTTCC
T ss_pred eCCCcccHHHHHHHHh---------HCcCCCCCCCc
Confidence 5999999999976643 23458999953
No 260
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=49.00 E-value=24 Score=43.78 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=21.0
Q ss_pred CCccchhhhhhcCCCcchhhHHHHHHH
Q 001337 592 DKGLGCILAHTMGLGKTFQVIAFLYTA 618 (1097)
Q Consensus 592 ~~~~GgILADeMGLGKTlqaIali~~~ 618 (1097)
....+.+|.-+.|.|||..+-++...+
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 356788999999999998776666544
No 261
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.99 E-value=6.3 Score=45.72 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=34.3
Q ss_pred CccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhhhhhHHh
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQE 644 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv~qW~~E 644 (1097)
...|.||.-+.|+|||+.|=|++... ..+++.|.+..++..|.-|
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~-------~~~f~~v~~s~l~~~~vGe 258 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQT-------NATFLKLAAPQLVQMYIGE 258 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH-------TCEEEEEEGGGGCSSCSSH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHh-------CCCEEEEehhhhhhcccch
Confidence 46899999999999999888776654 2377777777777766443
No 262
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=48.33 E-value=20 Score=42.36 Aligned_cols=25 Identities=20% Similarity=0.083 Sum_probs=19.6
Q ss_pred ccchhhhhhcCCCcchhhHHHHHHH
Q 001337 594 GLGCILAHTMGLGKTFQVIAFLYTA 618 (1097)
Q Consensus 594 ~~GgILADeMGLGKTlqaIali~~~ 618 (1097)
..+.+|.-+.|+|||..|-+++..+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578889999999998777665543
No 263
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=48.27 E-value=4.1 Score=37.82 Aligned_cols=44 Identities=23% Similarity=0.615 Sum_probs=28.7
Q ss_pred cceeeeccCCCC-eeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 376 ECYCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 376 ~~~C~~C~~gg~-l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
+..|.+|.+-=. .+.- .|...||..||...+.. +...|++|...
T Consensus 15 ~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~---------~~~~CP~Cr~~ 59 (115)
T 3l11_A 15 ECQCGICMEILVEPVTL-PCNHTLCKPCFQSTVEK---------ASLCCPFCRRR 59 (115)
T ss_dssp HHBCTTTCSBCSSCEEC-TTSCEECHHHHCCCCCT---------TTSBCTTTCCB
T ss_pred CCCCccCCcccCceeEc-CCCCHHhHHHHHHHHhH---------CcCCCCCCCcc
Confidence 345777764322 1111 59999999999877542 24679999754
No 264
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=47.71 E-value=5.3 Score=42.91 Aligned_cols=45 Identities=0% Similarity=-0.210 Sum_probs=30.4
Q ss_pred CcceeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 375 SECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 375 ~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
.+..|.+|.+--.--..-.|..+||..||.+.+... .-.||+|..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~---------~~~cP~~~~ 251 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV---------GHFNPVTRS 251 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT---------CSSCTTTCC
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC---------CCCCcCCCC
Confidence 455788888765433344599999999997665321 234999953
No 265
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=47.23 E-value=14 Score=39.90 Aligned_cols=23 Identities=26% Similarity=0.275 Sum_probs=18.7
Q ss_pred chhhhhhcCCCcchhhHHHHHHH
Q 001337 596 GCILAHTMGLGKTFQVIAFLYTA 618 (1097)
Q Consensus 596 GgILADeMGLGKTlqaIali~~~ 618 (1097)
..+|.-+.|.|||..+-++...+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 48889999999998777776554
No 266
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=45.92 E-value=26 Score=40.66 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=22.4
Q ss_pred hhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeec
Q 001337 597 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 633 (1097)
Q Consensus 597 gILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~ 633 (1097)
.+++-..|.|||.++..++..+... + +++++|+
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~~---G-~kVllv~ 135 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQKR---G-YKVGVVC 135 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT---T-CCEEEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHHHHC---C-CeEEEEe
Confidence 3456669999999888888776543 2 3555554
No 267
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=45.38 E-value=4.7 Score=36.35 Aligned_cols=42 Identities=21% Similarity=0.452 Sum_probs=28.0
Q ss_pred ceeeeccCCC-CeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 377 CYCVWCGRSS-DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 377 ~~C~~C~~gg-~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
..|.+|.+.- +.+..-.|...||..||...+.. .-.|+.|..
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----------~~~CP~Cr~ 65 (99)
T 2y43_A 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY----------KTQCPTCCV 65 (99)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT----------CCBCTTTCC
T ss_pred CCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC----------CCCCCCCCC
Confidence 3577776543 33334469999999999766432 247999964
No 268
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=45.05 E-value=5 Score=39.45 Aligned_cols=27 Identities=22% Similarity=0.758 Sum_probs=20.0
Q ss_pred ccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 393 SCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 393 ~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
.|...||..||...+.. ..-.|++|..
T Consensus 95 ~CgH~fC~~Ci~~~~~~---------~~~~CP~Cr~ 121 (150)
T 1z6u_A 95 ECFHNVCKDCLQRSFKA---------QVFSCPACRH 121 (150)
T ss_dssp TTSCEEEHHHHHHHHHT---------TCCBCTTTCC
T ss_pred CCCCchhHHHHHHHHHh---------CCCcCCCCCc
Confidence 58999999999766532 3457999953
No 269
>3f1f_4 50S ribosomal protein L31; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 3d5d_4 3d5b_4 3f1h_4
Probab=44.95 E-value=8 Score=34.99 Aligned_cols=54 Identities=20% Similarity=0.487 Sum_probs=21.4
Q ss_pred cCCcccccccCcceeeccccceEEEeeccceeEEEEecCcccchhhcccccCCCC
Q 001337 320 TDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADC 374 (1097)
Q Consensus 320 ~~~~~~~~~~~~~~~C~~Cg~~~~~~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~ 374 (1097)
++..+.-+-..-.|.|+ ||....---.-+.+.+-+|..|+.||.-..-..|..|
T Consensus 27 MKk~IHP~Y~~v~v~ct-~G~~f~t~ST~~~i~vDI~S~~HPFYTGkqk~vdt~G 80 (97)
T 3f1f_4 27 VKEGIHPKLVPARIICG-CGNVIETYSTKPEIYVEVCSKCHPFYTGQQRFVDTEG 80 (97)
T ss_dssp ---------CCCEEEET-TEEEEECCCSSCCEEESSCTTC---------------
T ss_pred ccCCCCCCCeEEEEEEC-CCCEEEeeeeeeEEEEEECCCCCCCCcCCEEEEcccC
Confidence 33344445555679995 9976442223456899999999999986655555444
No 270
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=44.84 E-value=18 Score=45.26 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=31.4
Q ss_pred CccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhhhhhHH
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQ 643 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv~qW~~ 643 (1097)
...|.+|.-..|.|||+.|-+++... ..+++.|-...++..|.-
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~-------~~~f~~v~~~~l~s~~vG 553 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANEC-------QANFISIKGPELLTMWFG 553 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTT-------TCEEEECCHHHHHTTTCS
T ss_pred CCceEEEecCCCCCchHHHHHHHHHh-------CCceEEeccchhhccccc
Confidence 45789999999999998776665442 236666666777766643
No 271
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.47 E-value=8.8 Score=32.28 Aligned_cols=44 Identities=20% Similarity=0.477 Sum_probs=30.8
Q ss_pred CcceeeeccCCCC-eeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 375 SECYCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 375 ~~~~C~~C~~gg~-l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
.+..|.+|.+.=. .+.-..|...||..||...+.. .-.|++|..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----------~~~CP~Cr~ 58 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY----------SNRCPKCNI 58 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH----------CSSCTTTCC
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc----------CCcCCCcCc
Confidence 3457999976543 4444579999999999766522 357999964
No 272
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.37 E-value=8.2 Score=44.65 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=34.7
Q ss_pred CCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhhhhhHHh
Q 001337 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQE 644 (1097)
Q Consensus 592 ~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv~qW~~E 644 (1097)
....|.||.-..|+|||+.|=|++... ..+++.|....++..|.-|
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~-------~~~fi~v~~s~l~sk~vGe 259 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQT-------SATFLRIVGSELIQKYLGD 259 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHH-------TCEEEEEESGGGCCSSSSH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHh-------CCCEEEEEHHHhhhccCch
Confidence 346899999999999999888777654 2367777777777766544
No 273
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=44.36 E-value=22 Score=39.11 Aligned_cols=23 Identities=4% Similarity=-0.119 Sum_probs=18.6
Q ss_pred ccchhhhhhcCCCcchhhHHHHH
Q 001337 594 GLGCILAHTMGLGKTFQVIAFLY 616 (1097)
Q Consensus 594 ~~GgILADeMGLGKTlqaIali~ 616 (1097)
....|+.-+.|.|||-.+.+++.
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56788899999999977766654
No 274
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.22 E-value=8 Score=44.79 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=32.5
Q ss_pred CCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhhhhhH
Q 001337 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWK 642 (1097)
Q Consensus 592 ~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv~qW~ 642 (1097)
....|.+|.-..|+|||+.|=|++..+ ..+++.|....++..|.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~-------~~~~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST-------KAAFIRVNGSEFVHKYL 247 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH-------TCEEEEEEGGGTCCSSC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh-------CCCeEEEecchhhcccc
Confidence 356789999999999999888776554 23667776676666553
No 275
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=44.16 E-value=4.3 Score=35.46 Aligned_cols=24 Identities=33% Similarity=1.197 Sum_probs=18.7
Q ss_pred cccchhhhhhhccchhhhhhhhhhcccceeeecChhhHHHHHHHHhhhcCC
Q 001337 394 CKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGS 444 (1097)
Q Consensus 394 C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~~~~~l~~~~~~~~~~ 444 (1097)
|..+||+.| -|+|.+| .+.|+|+-
T Consensus 22 Cn~CYCKkC-----------------cyHCq~C----------Fl~KGLGI 45 (86)
T 3mi9_C 22 CTNCYCKKC-----------------CFHCQVC----------FITKALGI 45 (86)
T ss_dssp CCSCCSTTG-----------------GGSSHHH----------HHHTTSCC
T ss_pred CCCccccch-----------------hhhhhhh----------hcccCCcc
Confidence 778899999 5889888 34577766
No 276
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.12 E-value=8.5 Score=44.93 Aligned_cols=46 Identities=24% Similarity=0.217 Sum_probs=34.3
Q ss_pred CCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhhhhhHHh
Q 001337 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQE 644 (1097)
Q Consensus 592 ~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv~qW~~E 644 (1097)
....|.||.-..|+|||+.|=|++... ..+++.|....++..|.-|
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~-------~~~fi~vs~s~L~sk~vGe 286 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT-------DATFIRVIGSELVQKYVGE 286 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH-------TCEEEEEEGGGGCCCSSSH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc-------CCCeEEEEhHHhhcccCCH
Confidence 356899999999999999888776554 2367777777777666443
No 277
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=44.12 E-value=21 Score=41.96 Aligned_cols=83 Identities=16% Similarity=0.175 Sum_probs=53.4
Q ss_pred hhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchh-hhhhhHHhhcccccCCCcccEEEeeccc--------c--
Q 001337 597 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQEFMKWRPSELKPLRVFMLEDV--------S-- 665 (1097)
Q Consensus 597 gILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~s-Lv~qW~~Ei~k~~p~~~~~l~V~~~~~~--------~-- 665 (1097)
..|.--.|.|||+.+.+++... .+|+|||+|.. ...+|.+++..|+|.. |+.+... +
T Consensus 17 ~~l~g~~gs~ka~~~a~l~~~~-------~~p~lvv~~~~~~A~~l~~~l~~~~~~~-----v~~fp~~e~lpyd~~~p~ 84 (483)
T 3hjh_A 17 RLLGELTGAACATLVAEIAERH-------AGPVVLIAPDMQNALRLHDEISQFTDQM-----VMNLADWETLPYDSFSPH 84 (483)
T ss_dssp EEEECCCTTHHHHHHHHHHHHS-------SSCEEEEESSHHHHHHHHHHHHHTCSSC-----EEECCCCCSCTTCSSCCC
T ss_pred EEEeCCCchHHHHHHHHHHHHh-------CCCEEEEeCCHHHHHHHHHHHHhhCCCc-----EEEEeCcccccccccCCC
Confidence 3556668999998766665331 35899999965 6779999999988752 3332221 1
Q ss_pred ---hhHHHHHHHHHHh-cCcEEEEeecccc
Q 001337 666 ---RDRRAELLAKWRA-KGGVFLIGYTAFR 691 (1097)
Q Consensus 666 ---~~~r~~~l~~~~~-~~~VvIitY~~~r 691 (1097)
...|...+..+.. ...|+|++...+.
T Consensus 85 ~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~ 114 (483)
T 3hjh_A 85 QDIISSRLSTLYQLPTMQRGVLIVPVNTLM 114 (483)
T ss_dssp HHHHHHHHHHHHHGGGCCSSEEEEEHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCEEEEEHHHHh
Confidence 1345555555433 3468888877654
No 278
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=44.12 E-value=5.2 Score=45.56 Aligned_cols=43 Identities=23% Similarity=0.546 Sum_probs=31.5
Q ss_pred ceeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 377 CYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 377 ~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
..|.+|.+.-.-...-.|...||..|+...+. ...=.||+|..
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~---------~~~~~CP~CR~ 375 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQE---------SEGQGCPFCRC 375 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEECHHHHHHHHH---------HTCSBCTTTCC
T ss_pred CCCCccCcCCCCeEEeCCCChhhHHHHHHHHh---------cCCCCCCCCCC
Confidence 47999987766666667999999999865432 12347999964
No 279
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=43.89 E-value=5.3 Score=34.08 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=28.5
Q ss_pred ceeeeccCCCC-eeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 377 CYCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 377 ~~C~~C~~gg~-l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
..|.+|.+.=. .+.. .|...||..||...+..... .....-.|++|..
T Consensus 13 ~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~~~---~~~~~~~CP~Cr~ 61 (79)
T 2egp_A 13 VTCPICLELLTEPLSL-DCGHSLCRACITVSNKEAVT---SMGGKSSCPVCGI 61 (79)
T ss_dssp CEETTTTEECSSCCCC-SSSCCCCHHHHSCCCCCCSS---SCCCCCCCSSSCC
T ss_pred CCCcCCCcccCCeeEC-CCCCHHHHHHHHHHHHhccc---CCCCCCcCCCCCC
Confidence 35777753221 1111 59999999999877543211 1123568999964
No 280
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=43.66 E-value=6.7 Score=32.27 Aligned_cols=43 Identities=21% Similarity=0.514 Sum_probs=28.0
Q ss_pred ceeeeccC----CCCe-eeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 377 CYCVWCGR----SSDL-VSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 377 ~~C~~C~~----gg~l-~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
..|.+|.+ .... ..=-.|..+||..||...+. .+.-.|++|..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~---------~~~~~CP~Cr~ 51 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV---------RGAGNCPECGT 51 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH---------TTSSSCTTTCC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH---------cCCCcCCCCCC
Confidence 46888877 2221 11236999999999976532 13467999964
No 281
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=43.43 E-value=40 Score=39.02 Aligned_cols=39 Identities=15% Similarity=0.076 Sum_probs=27.2
Q ss_pred CccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecc
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 634 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P 634 (1097)
.|.-.+|+-..|.|||.-++.++....... ..+++++..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~---g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT---NENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS---SCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC---CCcEEEEEC
Confidence 345578899999999987777766654321 237888764
No 282
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=42.69 E-value=6.7 Score=36.24 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=21.2
Q ss_pred eeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 389 VSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 389 ~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
+.--.|...||..||...+.. .=.|++|..
T Consensus 68 ~~~~~C~H~FH~~Ci~~Wl~~----------~~~CP~Cr~ 97 (106)
T 3dpl_R 68 VAWGVCNHAFHFHCISRWLKT----------RQVCPLDNR 97 (106)
T ss_dssp EEEETTSCEEEHHHHHHHHTT----------CSBCSSSCS
T ss_pred EeecccCcEECHHHHHHHHHc----------CCcCcCCCC
Confidence 333469999999999766432 235999964
No 283
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=42.06 E-value=33 Score=38.68 Aligned_cols=45 Identities=18% Similarity=0.066 Sum_probs=31.6
Q ss_pred ccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhhhhhH
Q 001337 594 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWK 642 (1097)
Q Consensus 594 ~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv~qW~ 642 (1097)
+.-.+|+-..|.|||..++.++...... .+++++|.......+|.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~----g~~vlyi~~E~s~~~~~ 118 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA----GGTCAFIDAEHALDPVY 118 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT----TCCEEEEESSCCCCHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC----CCeEEEEECCCChhHHH
Confidence 3456778899999998888887766443 24777777655555553
No 284
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=41.32 E-value=7.9 Score=34.49 Aligned_cols=29 Identities=28% Similarity=0.734 Sum_probs=23.5
Q ss_pred cceeeeccC--CCCeeeccc--cccchhhhhhh
Q 001337 376 ECYCVWCGR--SSDLVSCKS--CKTLFCTTCVK 404 (1097)
Q Consensus 376 ~~~C~~C~~--gg~l~~Cd~--C~~~fc~~Cl~ 404 (1097)
..-|.+|.. .|--|-|.. |.+.||+.|-.
T Consensus 17 ~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 17 KLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHH
T ss_pred cCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHH
Confidence 447999985 388888876 99999999953
No 285
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=40.89 E-value=68 Score=36.94 Aligned_cols=38 Identities=21% Similarity=0.045 Sum_probs=27.1
Q ss_pred ccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecc
Q 001337 594 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 634 (1097)
Q Consensus 594 ~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P 634 (1097)
|.=.+|+-..|.|||.-++.++....... ..+++++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~---g~~vl~~sl 237 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE---GVGVGIYSL 237 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT---CCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC---CCeEEEEEC
Confidence 44568899999999987777776654321 247888764
No 286
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=40.62 E-value=25 Score=38.93 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=19.1
Q ss_pred ccchhhhhhcCCCcchhhHHHHHHH
Q 001337 594 GLGCILAHTMGLGKTFQVIAFLYTA 618 (1097)
Q Consensus 594 ~~GgILADeMGLGKTlqaIali~~~ 618 (1097)
+...+|.-+.|.|||..+-++...+
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456889999999998777766554
No 287
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=39.97 E-value=8.6 Score=42.84 Aligned_cols=53 Identities=23% Similarity=0.451 Sum_probs=31.9
Q ss_pred cceeeeccC----CCCe--eecc--ccccchhhhhhhccchhhhhhhh-hhcccceeeecCh
Q 001337 376 ECYCVWCGR----SSDL--VSCK--SCKTLFCTTCVKRNISEACLSDE-VQASCWQCCCCSP 428 (1097)
Q Consensus 376 ~~~C~~C~~----gg~l--~~Cd--~C~~~fc~~Cl~~~~~~~~~~~~-~~~~~W~C~~C~~ 428 (1097)
...|.+|-. +|++ ..|+ .|...||..||...+-...-.+. ...-.=.|++|..
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~ 369 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKA 369 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCC
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCC
Confidence 447999963 3444 4788 59999999999776533211000 0111125999964
No 288
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=39.50 E-value=1e+02 Score=31.45 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=26.0
Q ss_pred ccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch
Q 001337 594 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 635 (1097)
Q Consensus 594 ~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~ 635 (1097)
|.-.+|+-+.|.|||..++.++...... .++++++.-.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~----~~~v~~~~~e 60 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM----GEPGIYVALE 60 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEEcc
Confidence 3345678889999998877777665433 2467777643
No 289
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=39.40 E-value=35 Score=39.46 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=21.5
Q ss_pred hhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeec
Q 001337 597 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 633 (1097)
Q Consensus 597 gILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~ 633 (1097)
.+++-..|.|||.++..++..+... + +++++|.
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~---G-~kVllv~ 132 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKR---G-YKVGLVA 132 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHT---T-CCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc---C-CeEEEEe
Confidence 4456678999998877777665433 2 3555554
No 290
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=38.97 E-value=42 Score=37.51 Aligned_cols=44 Identities=16% Similarity=0.014 Sum_probs=28.8
Q ss_pred ccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhhhhh
Q 001337 594 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW 641 (1097)
Q Consensus 594 ~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv~qW 641 (1097)
+.-.+|+-+.|.|||..++.++...... .++++++.-.....++
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~----g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA----GGIAAFIDAEHALDPE 104 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT----TCCEEEEESSCCCCHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEECCCCcCHH
Confidence 3446778899999998888877665433 2466766654434433
No 291
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=38.83 E-value=7.6 Score=38.40 Aligned_cols=45 Identities=22% Similarity=0.662 Sum_probs=32.6
Q ss_pred cceeeeccCC-----CCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 376 ECYCVWCGRS-----SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 376 ~~~C~~C~~g-----g~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
+..|..|+.. +.=..|-.|...+|..|-.- ......|.|-+|...
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~---------~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA---------HPEEQGWLCDPCHLA 117 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC---------CSSSSSCEEHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccc---------cCCCCcEeeHHHHHH
Confidence 4577777765 44467888999999999421 234578999999765
No 292
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=38.76 E-value=9 Score=38.90 Aligned_cols=43 Identities=0% Similarity=-0.223 Sum_probs=28.2
Q ss_pred cceeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecC
Q 001337 376 ECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 427 (1097)
Q Consensus 376 ~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 427 (1097)
+..|.+|++--.--.+-.|..+||..||...+.. .+. .||+|.
T Consensus 106 ~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~--------~~~-tcP~t~ 148 (179)
T 2f42_A 106 YLCGKISFELMREPCITPSGITYDRKDIEEHLQR--------VGH-FDPVTR 148 (179)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH--------TCS-BCTTTC
T ss_pred hhcccCccccCCCCeECCCCCEECHHHHHHHHHh--------CCC-CCCCCc
Confidence 4467777765543333358999999999776532 133 699985
No 293
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=38.55 E-value=13 Score=33.07 Aligned_cols=50 Identities=20% Similarity=0.545 Sum_probs=32.7
Q ss_pred cceeeeccCC---CCeeeccccccchhhhhhhccchhhhhhhhhhc--ccceeee--cChh
Q 001337 376 ECYCVWCGRS---SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQA--SCWQCCC--CSPS 429 (1097)
Q Consensus 376 ~~~C~~C~~g---g~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~--~~W~C~~--C~~~ 429 (1097)
...|.+|-+- ...+.-..|...||..|+...+... +... .+..|+. |...
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~----i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELL----IKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHH----HHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHH----hhcCCcccccCccccCCCC
Confidence 4469999754 2344445699999999997665432 2221 3578999 8644
No 294
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=38.18 E-value=22 Score=44.41 Aligned_cols=103 Identities=15% Similarity=-0.018 Sum_probs=66.0
Q ss_pred cccCcceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhc
Q 001337 956 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 1035 (1097)
Q Consensus 956 ~~~S~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn 1035 (1097)
...|||-.+..-.+......|.+++|.+.....+..+...+.... ...|+.+..++|+++..+|...+....
T Consensus 397 ~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~--------~~~gi~v~~l~G~~~~~~r~~~~~~l~ 468 (780)
T 1gm5_A 397 DVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESF--------SKFNIHVALLIGATTPSEKEKIKSGLR 468 (780)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHH--------TCSSCCEEECCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh--------hhcCceEEEEeCCCCHHHHHHHHHHHh
Confidence 456888766555444444567899999987766655555554321 013789999999999999998888887
Q ss_pred ccccceeeEEEeeeccccccceecccceEEEEcC
Q 001337 1036 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDG 1069 (1097)
Q Consensus 1036 ~~~n~~v~VlLiStkagg~GLNL~~An~VIi~D~ 1069 (1097)
+ +.+.|++.+.......+++.....||+=+.
T Consensus 469 ~---g~~~IvVgT~~ll~~~~~~~~l~lVVIDEa 499 (780)
T 1gm5_A 469 N---GQIDVVIGTHALIQEDVHFKNLGLVIIDEQ 499 (780)
T ss_dssp S---SCCCEEEECTTHHHHCCCCSCCCEEEEESC
T ss_pred c---CCCCEEEECHHHHhhhhhccCCceEEeccc
Confidence 6 334455555444444455555555554333
No 295
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=37.37 E-value=8.3 Score=36.34 Aligned_cols=28 Identities=18% Similarity=0.354 Sum_probs=0.0
Q ss_pred cccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 392 KSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 392 d~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
-.|...||..||.+.+... =.||+|...
T Consensus 82 ~~C~H~FH~~CI~~Wl~~~----------~~CP~Cr~~ 109 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLKTR----------QVCPLDNRE 109 (117)
T ss_dssp --------------------------------------
T ss_pred CCcCceEcHHHHHHHHHcC----------CcCCCCCCe
Confidence 4699999999997765431 259999643
No 296
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=37.36 E-value=6.9 Score=35.84 Aligned_cols=43 Identities=30% Similarity=0.674 Sum_probs=28.7
Q ss_pred cceeeeccCCC-CeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 376 ECYCVWCGRSS-DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 376 ~~~C~~C~~gg-~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
+..|.+|.+.= +.+....|..+||..||...+.. .-.|+.|..
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----------~~~CP~Cr~ 58 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET----------SKYCPICDV 58 (108)
T ss_dssp GTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS----------CSBCTTTCC
T ss_pred cCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh----------CCcCcCCCc
Confidence 34677776543 34444579999999998655422 257999954
No 297
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=37.13 E-value=9.1 Score=35.70 Aligned_cols=43 Identities=23% Similarity=0.533 Sum_probs=28.4
Q ss_pred cceeeeccCCCC-eeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 376 ECYCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 376 ~~~C~~C~~gg~-l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
+..|.+|.+--. .+.. .|...||..||...+... ...|+.|..
T Consensus 18 ~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~---------~~~CP~Cr~ 61 (118)
T 3hct_A 18 KYECPICLMALREAVQT-PCGHRFCKACIIKSIRDA---------GHKCPVDNE 61 (118)
T ss_dssp GGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHH---------CSBCTTTCC
T ss_pred CCCCCcCChhhcCeEEC-CcCChhhHHHHHHHHhhC---------CCCCCCCCC
Confidence 446888875433 2232 599999999997654322 348999953
No 298
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.00 E-value=15 Score=31.60 Aligned_cols=42 Identities=21% Similarity=0.452 Sum_probs=26.1
Q ss_pred eeeeccCCCC-eeeccccccchhhhhhhccchhhhhhhhhhcccceeeecC
Q 001337 378 YCVWCGRSSD-LVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 427 (1097)
Q Consensus 378 ~C~~C~~gg~-l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 427 (1097)
.|.+|-.--. =.-|..|...||..||.+.+... ..=.|++|.
T Consensus 17 ~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~--------~~~~CP~Cr 59 (74)
T 2ct0_A 17 ICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN--------AEPRCPHCN 59 (74)
T ss_dssp BCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTC--------SSCCCTTTC
T ss_pred cCcchhhHcccCCccCCCCchhhHHHHHHHHHhc--------CCCCCCCCc
Confidence 4555543221 13466899999999998776321 113599985
No 299
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=34.21 E-value=9.7 Score=36.98 Aligned_cols=43 Identities=19% Similarity=0.542 Sum_probs=29.1
Q ss_pred cceeeeccCCC-CeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 376 ECYCVWCGRSS-DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 376 ~~~C~~C~~gg-~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
+..|.+|.+-= +-+. -.|...||..||...+. .+.-.|+.|..
T Consensus 31 ~~~C~IC~~~~~~pv~-~~CgH~FC~~Ci~~~~~---------~~~~~CP~Cr~ 74 (141)
T 3knv_A 31 KYLCSACRNVLRRPFQ-AQCGHRYCSFCLASILS---------SGPQNCAACVH 74 (141)
T ss_dssp GGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHGG---------GSCEECHHHHH
T ss_pred CcCCCCCChhhcCcEE-CCCCCccCHHHHHHHHh---------cCCCCCCCCCC
Confidence 44688887543 2333 26999999999976643 23467999943
No 300
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=33.95 E-value=25 Score=43.95 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=28.0
Q ss_pred CccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhhhhhH
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWK 642 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv~qW~ 642 (1097)
...|.||.-..|.|||+.|=+++..+ + .+++.|-...++..|.
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~el------g-~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANET------G-AFFFLINGPEIMSKLA 279 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTT------T-CEEEEEEHHHHHSSCT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh------C-CeEEEEEhHHhhcccc
Confidence 46799999999999997766554332 1 2455555555555443
No 301
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=33.83 E-value=15 Score=31.83 Aligned_cols=44 Identities=20% Similarity=0.543 Sum_probs=29.5
Q ss_pred CcceeeeccCCCCe-----eeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 375 SECYCVWCGRSSDL-----VSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 375 ~~~~C~~C~~gg~l-----~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
.+..|.+|-+.=++ +.| .|...||..|+..... .+...|+.|..
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~---------~~~~~CP~CR~ 58 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRT---------DENGLCPACRK 58 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTT---------SSCSBCTTTCC
T ss_pred cCCcCCccCccCcccccccccc-CCCCCcCHHHHHHHHh---------cCCCCCCCCCC
Confidence 34579999883321 112 4999999999865432 24678999964
No 302
>1vs6_Z 50S ribosomal protein L31; ribosome, kasugamycin; 3.46A {Escherichia coli} SCOP: d.325.1.2 PDB: 1vs8_Z 2aw4_Z 2awb_Z 2j28_Z 2rdo_Z 2vhm_Z 2vhn_Z 3bbx_Z 3e1b_S 3e1d_S 3iyx_A 3iyy_A 3izt_b* 3izu_b* 3j0t_2* 3j0w_2* 3j0y_2* 3j11_2* 3j12_2* 3j14_2*
Probab=32.83 E-value=10 Score=32.42 Aligned_cols=43 Identities=23% Similarity=0.303 Sum_probs=27.5
Q ss_pred cCcceeeccccceEEEeeccc-eeEEEEecCcccchhhcccccCC
Q 001337 329 LSEKFYCTACNNVAIEVHPHP-ILNVIVCKDCKCLLEKKMHVKDA 372 (1097)
Q Consensus 329 ~~~~~~C~~Cg~~~~~~~~Hp-~l~~~~C~~C~~~~~~~~~~~d~ 372 (1097)
..-.|.| +||....---..+ -+.+-+|..|+.||.-..-..|.
T Consensus 10 ~~v~~~~-s~g~~f~t~ST~~~ei~vdi~s~~HPFyTG~qk~vdt 53 (70)
T 1vs6_Z 10 EEITASC-SCGNVMKIRSTVGHDLNLDVCSKCHPFFTGKQRDVAT 53 (70)
T ss_dssp CCCBCCC-CSSCCCCCBCCCCCCCCCBCCSSSCCBCCCCCTTTTT
T ss_pred EEEEEEE-CCCCEEEEeecCCCcEeeeecCCCCccCcCcEEEEec
Confidence 3456889 8996632111111 27899999999999876554443
No 303
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=32.78 E-value=29 Score=45.37 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=43.7
Q ss_pred hcCCCcchhhHHHHHHHhhhccccceeeEeecchhhhhhhHHhhcccccCC-CcccEEEeecc
Q 001337 602 TMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE-LKPLRVFMLED 663 (1097)
Q Consensus 602 eMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv~qW~~Ei~k~~p~~-~~~l~V~~~~~ 663 (1097)
..|.|||.+++.-+++++..+. ...++|+|||...-.+-...+.+.++.. ...+.|..+|.
T Consensus 9 gAGSGKT~~l~~ri~~ll~~~~-~~~~il~lVP~q~TFt~~~rl~~~l~~~~~~~~~V~TFhs 70 (1166)
T 3u4q_B 9 RSGSGKTKLIINSIQDELRRAP-FGKPIIFLVPDQMTFLMEYELAKTPDMGGMIRAQVFSFSR 70 (1166)
T ss_dssp CTTSSHHHHHHHHHHHHHHHCT-TSSCEEEECCGGGHHHHHHHHTCCSSCSEESSEEEECHHH
T ss_pred CCCCChHHHHHHHHHHHHHhCC-CCCcEEEEecCcccHHHHHHHHHhhhhcceeeeEEecHHH
Confidence 3899999999888888776633 3368999999988777777777666532 23456666553
No 304
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=32.72 E-value=50 Score=41.56 Aligned_cols=26 Identities=23% Similarity=0.149 Sum_probs=20.3
Q ss_pred CccchhhhhhcCCCcchhhHHHHHHH
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYTA 618 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~~ 618 (1097)
...+.+|.-+.|.|||..+-+++..+
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999997776666554
No 305
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=31.84 E-value=35 Score=37.51 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=19.1
Q ss_pred hhhhcCCCcchhhHHHHHHHhhhccccceeeEeec
Q 001337 599 LAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 633 (1097)
Q Consensus 599 LADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~ 633 (1097)
+.-..|.|||..+..++..+... .++++++.
T Consensus 109 ivG~~GsGKTTl~~~LA~~l~~~----g~kV~lv~ 139 (306)
T 1vma_A 109 VVGVNGTGKTTSCGKLAKMFVDE----GKSVVLAA 139 (306)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHT----TCCEEEEE
T ss_pred EEcCCCChHHHHHHHHHHHHHhc----CCEEEEEc
Confidence 44469999997766666554332 23566554
No 306
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=31.44 E-value=18 Score=45.49 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=19.8
Q ss_pred CccchhhhhhcCCCcchhhHHHHHH
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYT 617 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~ 617 (1097)
.+.+.+|.-+.|+|||..+=++...
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred CCceeEEECCCCCCHHHHHHHHHHH
Confidence 4677899999999999876665544
No 307
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=31.22 E-value=13 Score=31.60 Aligned_cols=38 Identities=21% Similarity=0.488 Sum_probs=26.0
Q ss_pred ceeeeccCCCCeeeccccccc-hhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 377 CYCVWCGRSSDLVSCKSCKTL-FCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 377 ~~C~~C~~gg~l~~Cd~C~~~-fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
..|.+|-+.-.-..--.|... ||..|+... ..|++|..
T Consensus 25 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--------------~~CP~Cr~ 63 (74)
T 4ic3_A 25 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAV--------------DKCPMCYT 63 (74)
T ss_dssp TBCTTTSSSBCCEEEETTCCBCCCHHHHTTC--------------SBCTTTCC
T ss_pred CCCCCCCCCCCCEEEcCCCChhHHHHhhhcC--------------ccCCCcCc
Confidence 358888765443333358888 999997543 68999964
No 308
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=31.20 E-value=27 Score=40.57 Aligned_cols=24 Identities=25% Similarity=0.020 Sum_probs=18.0
Q ss_pred ccchhhhhhcCCCcchhhHHHHHH
Q 001337 594 GLGCILAHTMGLGKTFQVIAFLYT 617 (1097)
Q Consensus 594 ~~GgILADeMGLGKTlqaIali~~ 617 (1097)
..+.||.-+.|+|||..+-++...
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Confidence 357899999999999766555433
No 309
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=30.94 E-value=35 Score=37.18 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=18.5
Q ss_pred CccchhhhhhcCCCcchhhHHHHH
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLY 616 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~ 616 (1097)
.....+|.-+.|+|||..|-++..
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHHHHHH
Confidence 456788999999999976655543
No 310
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=29.82 E-value=70 Score=35.83 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=27.0
Q ss_pred ccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch
Q 001337 594 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 635 (1097)
Q Consensus 594 ~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~ 635 (1097)
+.-.+|+-..|.|||..++.++...... ..++++|...
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~----g~~vlyid~E 100 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAE 100 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEeCC
Confidence 3456778899999998888887766543 2367777653
No 311
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=29.57 E-value=15 Score=32.20 Aligned_cols=44 Identities=7% Similarity=-0.173 Sum_probs=30.5
Q ss_pred CcceeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 375 SECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 375 ~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
.+..|.+|.+--.-=..-.|..+||..||...+.. .-.|++|..
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~----------~~~cP~~~~ 56 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN----------SPTDPFNRQ 56 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH----------CSBCTTTCC
T ss_pred hheECcccCchhcCCeECCCCCEECHHHHHHHHhc----------CCCCCCCcC
Confidence 35679999876543333349999999999766531 357999953
No 312
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=29.05 E-value=76 Score=37.65 Aligned_cols=86 Identities=19% Similarity=0.159 Sum_probs=51.2
Q ss_pred hhhHHHhhh-ccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhccccccee
Q 001337 964 LLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRV 1042 (1097)
Q Consensus 964 ~L~eiL~~~-~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~~~n~~v 1042 (1097)
.+.+.|..+ ...+..+|||..+-..++.+... .+.+++ +.|... .+.++++.|... +..
T Consensus 380 ~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---------------~~~~v~-~q~~~~--~~~~~~~~~~~~--~~~ 439 (551)
T 3crv_A 380 RYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---------------ISLPKY-VESEDS--SVEDLYSAISAN--NKV 439 (551)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---------------CCSSEE-ECCSSC--CHHHHHHHTTSS--SSC
T ss_pred HHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---------------cCCcEE-EcCCCC--CHHHHHHHHHhc--CCe
Confidence 344444433 23456788888777666666541 122332 233221 256788999642 222
Q ss_pred eEEEeee--ccccccceec---c--cceEEEEcCCc
Q 001337 1043 KCTLIST--RAGSLGINLH---S--ANRVIIVDGSW 1071 (1097)
Q Consensus 1043 ~VlLiSt--kagg~GLNL~---~--An~VIi~D~~W 1071 (1097)
+|+++ ...++|||++ + +..||+.-.|+
T Consensus 440 --vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 440 --LIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp --EEEEESSCCSCCSSCCEETTEESEEEEEEESCCC
T ss_pred --EEEEEecceecccccccccCCcceeEEEEEcCCC
Confidence 46665 6889999999 3 67888887665
No 313
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=28.91 E-value=23 Score=32.18 Aligned_cols=44 Identities=7% Similarity=-0.165 Sum_probs=30.4
Q ss_pred CcceeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 375 SECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 375 ~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
.+..|.+|.+--.-=..-.|..+||..||...+.. .-.|++|..
T Consensus 28 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~----------~~~cP~~~~ 71 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN----------SPTDPFNRQ 71 (100)
T ss_dssp TTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS----------CSBCSSSCC
T ss_pred HhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc----------CCCCCCCCC
Confidence 35679999866543333349999999999766531 357999953
No 314
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=28.76 E-value=2.6e+02 Score=30.22 Aligned_cols=38 Identities=11% Similarity=-0.013 Sum_probs=27.6
Q ss_pred CccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecc
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 634 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P 634 (1097)
.|.=.+|+-..|.|||.-++.++......+ .++|++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g----~~vl~~sl 104 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND----DVVNLHSL 104 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT----CEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC----CeEEEEEC
Confidence 344578899999999987777766554332 58888874
No 315
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=28.35 E-value=96 Score=30.76 Aligned_cols=39 Identities=33% Similarity=0.394 Sum_probs=25.9
Q ss_pred hhcCCCcchhhHHHHHHHhhhccccceeeEeec--chhhhhhhHH
Q 001337 601 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT--PVNVLHNWKQ 643 (1097)
Q Consensus 601 DeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~--P~sLv~qW~~ 643 (1097)
---|.|||..++.+...+.+.+ +++|+|= |..-+..|..
T Consensus 9 ~kgG~GKTt~a~~la~~la~~g----~~vlliD~D~~~~~~~~~~ 49 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRSG----YNIAVVDTDPQMSLTNWSK 49 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHHHCC----CeEEEEECCCCCCHHHHHh
Confidence 3458999999988888776542 3666664 5555555643
No 316
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=28.32 E-value=1.2e+02 Score=30.33 Aligned_cols=23 Identities=17% Similarity=0.041 Sum_probs=17.0
Q ss_pred ccchhhhhhcCCCcchhhHHHHH
Q 001337 594 GLGCILAHTMGLGKTFQVIAFLY 616 (1097)
Q Consensus 594 ~~GgILADeMGLGKTlqaIali~ 616 (1097)
|.-.+|+-..|.|||..+..++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 44467788999999976666554
No 317
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=27.44 E-value=13 Score=37.66 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=24.8
Q ss_pred ccccchhhhhhhccchhhhhhhhhhcccceeeecC
Q 001337 393 SCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 427 (1097)
Q Consensus 393 ~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 427 (1097)
.|||++|..+--.++|..... -...-+.+|+.|.
T Consensus 108 ~CPRv~C~~q~~LPvGlSd~p-g~~~VKlyCP~C~ 141 (182)
T 1qf8_A 108 YCPRVYCENQPMLPIGLSDIP-GEAMVKLYCPKCM 141 (182)
T ss_dssp BCCBGGGTTCBCEEECSCSST-TSCBCEEECTTTC
T ss_pred CCCccccCCCcccCCccCCCC-CCCceEEECCCcc
Confidence 399999998877788876544 2234468899995
No 318
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=27.01 E-value=17 Score=31.44 Aligned_cols=39 Identities=18% Similarity=0.500 Sum_probs=26.8
Q ss_pred ceeeeccCCCCeeeccccccc-hhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 377 CYCVWCGRSSDLVSCKSCKTL-FCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 377 ~~C~~C~~gg~l~~Cd~C~~~-fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
..|.+|-+.-.-..---|... ||..|+... |.|++|...
T Consensus 19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~--------------~~CP~Cr~~ 58 (79)
T 2yho_A 19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQL--------------QSCPVCRSR 58 (79)
T ss_dssp TBCTTTSSSBCCEEEETTCBCCBCHHHHTTC--------------SBCTTTCCB
T ss_pred CEeEEeCcccCcEEEECCCCHHHHHHHHHhc--------------CcCCCCCch
Confidence 368888765443333458887 999997432 699999643
No 319
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=26.62 E-value=8.8 Score=44.31 Aligned_cols=33 Identities=21% Similarity=0.575 Sum_probs=25.4
Q ss_pred ceeeccccceEEEeeccceeEEEEecCcccchhhccc
Q 001337 332 KFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMH 368 (1097)
Q Consensus 332 ~~~C~~Cg~~~~~~~~Hp~l~~~~C~~C~~~~~~~~~ 368 (1097)
...|..||...... .+.|..|..|+.||.....
T Consensus 50 ~~~C~vC~~~~~g~----hygv~~C~~C~~FFrR~~~ 82 (419)
T 3dzy_D 50 AIECRVCGDKASGF----HYGVHACEGCKGFFRRTIR 82 (419)
T ss_dssp CCCCSSSCSCCCSB----CSSSBCCHHHHHHHHHHHT
T ss_pred CCcCeECCCcCCCC----ccCcccchhhhHHHccchh
Confidence 35699999764432 3789999999999987654
No 320
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=26.60 E-value=22 Score=38.54 Aligned_cols=43 Identities=14% Similarity=0.031 Sum_probs=28.6
Q ss_pred CCccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhhhhh
Q 001337 592 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW 641 (1097)
Q Consensus 592 ~~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv~qW 641 (1097)
....|++|.-+.|+|||..|-+++..+ ..+++.|....+...|
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l-------~~~~i~v~~~~l~~~~ 76 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM-------GINPIMMSAGELESGN 76 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH-------TCCCEEEEHHHHHCC-
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh-------CCCEEEEeHHHhhhcc
Confidence 345688889999999998877776554 1355555555554433
No 321
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=26.29 E-value=16 Score=34.13 Aligned_cols=43 Identities=21% Similarity=0.689 Sum_probs=29.6
Q ss_pred cceeeeccC-------CCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 376 ECYCVWCGR-------SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 376 ~~~C~~C~~-------gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
+..|.+|.+ +|....--.|...||..||...+.. .-.|++|..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----------~~~CP~Cr~ 56 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----------ANTCPTCRK 56 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT----------CSBCTTTCC
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh----------CCCCCCCCC
Confidence 446888854 2444455579999999999766532 128999954
No 322
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.47 E-value=28 Score=29.08 Aligned_cols=40 Identities=28% Similarity=0.558 Sum_probs=29.2
Q ss_pred CcceeeeccCCCCeeeccccccc-hhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 375 SECYCVWCGRSSDLVSCKSCKTL-FCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 375 ~~~~C~~C~~gg~l~~Cd~C~~~-fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
.+..|.+|-+.-.-..---|... ||..|+.. .+.|++|..
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~--------------~~~CP~CR~ 54 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY--------------FQQCPMCRQ 54 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH--------------CSSCTTTCC
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhc--------------CCCCCCCCc
Confidence 34579999876655444558877 99999752 389999964
No 323
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=25.32 E-value=18 Score=33.46 Aligned_cols=43 Identities=28% Similarity=0.515 Sum_probs=28.1
Q ss_pred ceeeeccCCCCeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 377 CYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 377 ~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
..|.+|.+.=.--.--.|...||..||...+... .-.|+.|..
T Consensus 24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---------~~~CP~Cr~ 66 (116)
T 1rmd_A 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVM---------GSYCPSCRY 66 (116)
T ss_dssp TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT---------CSBCTTTCC
T ss_pred CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC---------cCcCCCCCC
Confidence 3588887543322223699999999997665331 346999964
No 324
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.24 E-value=22 Score=30.18 Aligned_cols=37 Identities=22% Similarity=0.546 Sum_probs=24.6
Q ss_pred eeeeccCCCCeeeccccccc-hhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 378 YCVWCGRSSDLVSCKSCKTL-FCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 378 ~C~~C~~gg~l~~Cd~C~~~-fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
.|.+|-+.-.-..--.|... ||..|+.. ...|++|..
T Consensus 27 ~C~IC~~~~~~~~~~pCgH~~~C~~C~~~--------------~~~CP~Cr~ 64 (75)
T 2ecg_A 27 LCKICMDRNIAIVFVPCGHLVTCKQCAEA--------------VDKCPMCYT 64 (75)
T ss_dssp SCSSSCSSCCCBCCSSSCCCCBCHHHHHH--------------CSBCTTTCC
T ss_pred CCCcCCCCCCCEEEecCCCHHHHHHHhhC--------------CCCCccCCc
Confidence 57777655433333358888 99999732 268999964
No 325
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=25.24 E-value=15 Score=35.36 Aligned_cols=48 Identities=27% Similarity=0.683 Sum_probs=31.5
Q ss_pred cceeeeccCCC-----CeeeccccccchhhhhhhccchhhhhhhhhhcccceeeecChh
Q 001337 376 ECYCVWCGRSS-----DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 429 (1097)
Q Consensus 376 ~~~C~~C~~gg-----~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~~ 429 (1097)
+..|..|+..= .=..|-.|...+|..|-..... -.....|.|-+|...
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~------~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSN------NRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCC------SSSSCCEEEHHHHHH
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccCCccCC------CCCccceechhhHHH
Confidence 34677876433 3347889999999999432210 023456999999754
No 326
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=24.88 E-value=58 Score=32.53 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=20.4
Q ss_pred cchhhhhhcCCCcchhhHHHHHHHh
Q 001337 595 LGCILAHTMGLGKTFQVIAFLYTAM 619 (1097)
Q Consensus 595 ~GgILADeMGLGKTlqaIali~~~l 619 (1097)
.+.+|.-+.|+|||..+-++...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6788899999999988777766554
No 327
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=23.99 E-value=23 Score=32.30 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=14.1
Q ss_pred CCCCcceeeeccCCCCee
Q 001337 372 ADCSECYCVWCGRSSDLV 389 (1097)
Q Consensus 372 ~d~~~~~C~~C~~gg~l~ 389 (1097)
++.+-.||--||.||+++
T Consensus 54 ~~k~~~~Cf~cg~gGd~i 71 (103)
T 1d0q_A 54 PEKQIFHCFGCGAGGNAF 71 (103)
T ss_dssp TTTTEEEETTTCCEECHH
T ss_pred cCCCEEEECCCCCCCCHH
Confidence 445566999999999875
No 328
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=23.77 E-value=1.9e+02 Score=33.24 Aligned_cols=39 Identities=10% Similarity=-0.038 Sum_probs=29.2
Q ss_pred CccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecch
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 635 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~ 635 (1097)
.|.=.||+-..|.|||.-++.++...... ..++|++..-
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~----g~~vl~fSlE 234 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN----DDVVNLHSLE 234 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT----TCEEEEECSS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc----CCEEEEEECC
Confidence 34557889999999998888877766543 2488888753
No 329
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=23.76 E-value=23 Score=32.01 Aligned_cols=43 Identities=5% Similarity=-0.217 Sum_probs=30.2
Q ss_pred cceeeeccCCCCeeeccccc-cchhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 376 ECYCVWCGRSSDLVSCKSCK-TLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 376 ~~~C~~C~~gg~l~~Cd~C~-~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
+..|.+|.+--.--..-.|. .+||..||...+.. .-.|++|..
T Consensus 22 ~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~----------~~~cP~~~~ 65 (98)
T 1wgm_A 22 EFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS----------DQTDPFNRS 65 (98)
T ss_dssp TTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT----------SCBCTTTCS
T ss_pred hcCCcCccccccCCeECCCCCeEECHHHHHHHHHh----------CCCCCCCCC
Confidence 55799988765433344588 99999999776532 247999953
No 330
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=23.53 E-value=97 Score=33.62 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=15.1
Q ss_pred hhhhhcCCCcchhhHHHHHHHh
Q 001337 598 ILAHTMGLGKTFQVIAFLYTAM 619 (1097)
Q Consensus 598 ILADeMGLGKTlqaIali~~~l 619 (1097)
++.-..|.|||.++..++..+.
T Consensus 109 ~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 109 VLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp EEEESTTSSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 3445579999987766665553
No 331
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=23.36 E-value=1e+02 Score=34.68 Aligned_cols=84 Identities=11% Similarity=0.122 Sum_probs=54.5
Q ss_pred cCCceeeccCCc------cchHHHHHHHhhcccccceeeEEEeeecc--ccccceec------ccceEEEEcCCcCCccc
Q 001337 1011 KGKDWYRLDGRT------ESSERQKLVERFNEPLNKRVKCTLISTRA--GSLGINLH------SANRVIIVDGSWNPTYD 1076 (1097)
Q Consensus 1011 ~Gi~~~ridGst------s~~eR~~~i~~Fn~~~n~~v~VlLiStka--gg~GLNL~------~An~VIi~D~~WNP~~~ 1076 (1097)
.|++-+.+-|+| +.++|.++++...+.-++++.|+. .+.+ -.+-+.+. +|+.+..+-|.|++...
T Consensus 92 ~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpVia-Gvg~~st~eai~la~~A~~~Gadavlvv~PyY~k~sq 170 (360)
T 4dpp_A 92 NGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIG-NTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSI 170 (360)
T ss_dssp TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEE-ECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCH
T ss_pred cCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEE-ecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCH
Confidence 588888888875 568999999887665456666543 3222 22233332 57899999999998754
Q ss_pred HHHHHHHhh-hcccccccccc
Q 001337 1077 LQAIYRAWR-CMDKQSQFLLT 1096 (1097)
Q Consensus 1077 ~QAiGRa~R-iGQkK~V~VYr 1096 (1097)
. .+-+-++ +-+.-||++|.
T Consensus 171 ~-gl~~hf~~IA~a~PiilYN 190 (360)
T 4dpp_A 171 E-GLIAHFQSVLHMGPTIIYN 190 (360)
T ss_dssp H-HHHHHHHTTGGGSCEEEEE
T ss_pred H-HHHHHHHHHHHhCCEEEEe
Confidence 3 4444444 44446888883
No 332
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=23.28 E-value=22 Score=29.30 Aligned_cols=44 Identities=23% Similarity=0.338 Sum_probs=28.9
Q ss_pred CcceeeeccCCCCeee--ccccccc-hhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 375 SECYCVWCGRSSDLVS--CKSCKTL-FCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 375 ~~~~C~~C~~gg~l~~--Cd~C~~~-fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
.+..|.+|-+.-.-.. ---|... ||..|+.... ...+.|++|..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~----------~~~~~CPiCR~ 53 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLK----------KRNKPCPVCRQ 53 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHH----------HTTCCCTTTCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHH----------HcCCcCCCcCc
Confidence 3457999986544222 2358877 8999975442 13578999964
No 333
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=23.24 E-value=65 Score=36.25 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=58.5
Q ss_pred ccCcceehhhHHHhhhccCCCceeEEecCCCchhHHHHHHhcCCCCCCCCcccccCCceeeccCCccchHHHHHHHhhcc
Q 001337 957 DYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 1036 (1097)
Q Consensus 957 ~~S~Kl~~L~eiL~~~~~~geKVLIFSq~~~~ld~L~~~L~~l~~~~~~~~~~~~Gi~~~ridGsts~~eR~~~i~~Fn~ 1036 (1097)
..|||-.+.+-.+......+.++||.+.....+..+...+..+. ..|+.+..++|+++..+|...+..+..
T Consensus 45 TGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~---------~~~~~v~~~~g~~~~~~~~~~~~~l~~ 115 (414)
T 3oiy_A 45 TGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLA---------DEKVKIFGFYSSMKKEEKEKFEKSFEE 115 (414)
T ss_dssp SSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHC---------CSSCCEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHc---------cCCceEEEEECCCChhhHHHHHHHhhc
Confidence 45778664443333334567899999998888888887777531 147889999999998888888888765
Q ss_pred cccceeeEEEeeeccc
Q 001337 1037 PLNKRVKCTLISTRAG 1052 (1097)
Q Consensus 1037 ~~n~~v~VlLiStkag 1052 (1097)
+...|++.++...
T Consensus 116 ---~~~~Iiv~Tp~~l 128 (414)
T 3oiy_A 116 ---DDYHILVFSTQFV 128 (414)
T ss_dssp ---TCCSEEEEEHHHH
T ss_pred ---CCCCEEEECHHHH
Confidence 2244566666544
No 334
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=23.12 E-value=21 Score=32.46 Aligned_cols=49 Identities=22% Similarity=0.597 Sum_probs=31.9
Q ss_pred eeeccccceEEEeeccceeEEEEecCcccchhhcccccCCCCCcceeeecc-CCCCeeeccccccchhhhhh
Q 001337 333 FYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCG-RSSDLVSCKSCKTLFCTTCV 403 (1097)
Q Consensus 333 ~~C~~Cg~~~~~~~~Hp~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~-~gg~l~~Cd~C~~~fc~~Cl 403 (1097)
-.|..|+. ..+|.-.|-+|..|. | ..++..|-+|| ..|.-- -=||.+|.
T Consensus 30 GkC~iCDs-----~Vrp~~~VrICdeCs--~---------G~~~~rCIiCg~~~g~~d------AYYC~eC~ 79 (109)
T 2k0a_A 30 GKCPICDS-----YVRPKRKVRVCENCS--F---------GKQAKNCIICNLNVGVND------AFYCWECC 79 (109)
T ss_dssp TCCTTTCC-----CCCCCEECEEEHHHH--T---------SSTTSBCTTTSSSBCCEE------CEECHHHH
T ss_pred CcccccCC-----ccCCcceEEECCcCC--C---------CCcCCceEEcCCCCCccc------ceehHhhh
Confidence 45666665 468888999999995 1 22355899999 555322 34556664
No 335
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=22.98 E-value=17 Score=37.80 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=24.5
Q ss_pred ccccchhhhhhhccchhhhhhhhhhcccceeeecC
Q 001337 393 SCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 427 (1097)
Q Consensus 393 ~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 427 (1097)
.|||++|..+--.++|...... ...-+-+|+.|.
T Consensus 108 ~CPRv~C~~q~~LPvGlSD~pg-~~~VKlyCP~C~ 141 (215)
T 4dgl_A 108 YCPRVYCENQPMLPIGLSDIPG-EAMVKLYCPKCM 141 (215)
T ss_dssp BCCBGGGTSCBCEEEESCSSTT-SCBEEEECTTTC
T ss_pred cCCccccCCCceeccccCCCCC-ccceeEeCCCcc
Confidence 3999999988777888765442 233468899994
No 336
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=22.66 E-value=5.9 Score=36.93 Aligned_cols=31 Identities=16% Similarity=0.439 Sum_probs=23.7
Q ss_pred eeeccccceEEEeeccceeEEEEecCcccch
Q 001337 333 FYCTACNNVAIEVHPHPILNVIVCKDCKCLL 363 (1097)
Q Consensus 333 ~~C~~Cg~~~~~~~~Hp~l~~~~C~~C~~~~ 363 (1097)
-.|.-||+...+-..+-.|.+.+|..|+..+
T Consensus 6 ~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~~ 36 (111)
T 1d4u_A 6 VICEECGKEFMDSYLMDHFDLPTCDDCRDAD 36 (111)
T ss_dssp EECTTTCCEESCSSSTTTTSCCCCTTTCSSS
T ss_pred CccccCCChhhHHHHHHhCCeeechhhcccc
Confidence 5699999875554456677899999998764
No 337
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=22.58 E-value=24 Score=39.50 Aligned_cols=29 Identities=28% Similarity=0.587 Sum_probs=22.3
Q ss_pred hhcccccceeeeeccCHHHHHHccCCCCCCcc
Q 001337 59 AAFGSKHWASVYLASTPQQAAAMGLKFPGVDE 90 (1097)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (1097)
.+|. +|-.. ..-||++-|..|+-|.|.+.
T Consensus 11 ~tF~--~WP~~-~~~~~~~lA~AGFyy~g~~D 39 (345)
T 3t6p_A 11 RTFM--YWPSS-VPVQPEQLASAGFYYVGRND 39 (345)
T ss_dssp HHGG--GSCTT-CSSCHHHHHHTTEEECSSTT
T ss_pred HHHh--hCCCc-ccCCHHHHHhCCCeecCCCC
Confidence 6674 68643 34689999999999999754
No 338
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=22.52 E-value=87 Score=38.18 Aligned_cols=34 Identities=35% Similarity=0.342 Sum_probs=22.9
Q ss_pred CCCEEEecccchhcccchhHHHHHhhhccc-eeeeeccCcc
Q 001337 715 GPDILVCDEAHMIKNTRADTTQALKQVKCQ-RRIALTGSPL 754 (1097)
Q Consensus 715 ~~dlVIiDEAH~iKN~~S~~~kal~~l~a~-~RllLTGTPi 754 (1097)
..|+||||||=.|- . -.+..+-.. .|++||.|--
T Consensus 255 ~~dlliVDEAAaIp--~----pll~~ll~~~~~v~~~tTv~ 289 (671)
T 2zpa_A 255 QADWLVVDEAAAIP--A----PLLHQLVSRFPRTLLTTTVQ 289 (671)
T ss_dssp CCSEEEEETGGGSC--H----HHHHHHHTTSSEEEEEEEBS
T ss_pred cCCEEEEEchhcCC--H----HHHHHHHhhCCeEEEEecCC
Confidence 58999999998872 2 223333234 4799988864
No 339
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=22.42 E-value=38 Score=37.09 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.3
Q ss_pred ccchhhhhhcCCCcchhhHHHHHHHh
Q 001337 594 GLGCILAHTMGLGKTFQVIAFLYTAM 619 (1097)
Q Consensus 594 ~~GgILADeMGLGKTlqaIali~~~l 619 (1097)
+.+.+|.-++|+|||..+.++...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57889999999999998888877665
No 340
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=21.99 E-value=1e+02 Score=42.47 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred CccchhhhhhcCCCcchhhHHHHHHHhhhccccceeeEeecchhhhhhhHHhhcccccCCCcccEEEeecccchhHHHHH
Q 001337 593 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAEL 672 (1097)
Q Consensus 593 ~~~GgILADeMGLGKTlqaIali~~~l~~~~~~~k~~LIV~P~sLv~qW~~Ei~k~~p~~~~~l~V~~~~~~~~~~r~~~ 672 (1097)
.+.+.+|.-+.|.|||..|++++......+. +++++.....+.+=. .+.+.-++..+.+.... ........
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~----~v~Fi~~e~~~~~l~---a~~~G~dl~~l~v~~~~--~~E~~l~~ 1496 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGK----TCAFIDAEHALDPIY---ARKLGVDIDNLLCSQPD--TGEQALEI 1496 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTC----CEEEECTTSCCCHHH---HHHTTCCTTTCEEECCS--SHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC----cEEEEEcccccCHHH---HHHcCCCchhceeecCC--hHHHHHHH
Q ss_pred HHHHHhcCcEEEEeeccccccccCcCCcchhhHHHHHHHhccCCCEEEecc
Q 001337 673 LAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 723 (1097)
Q Consensus 673 l~~~~~~~~VvIitY~~~r~l~~~~~~~~~~~~~~~~~ll~~~~dlVIiDE 723 (1097)
+..+.... .+++|||||
T Consensus 1497 ~~~lvr~~----------------------------------~~~lVVIDs 1513 (2050)
T 3cmu_A 1497 CDALARSG----------------------------------AVDVIVVDS 1513 (2050)
T ss_dssp HHHHHHHT----------------------------------CCSEEEESC
T ss_pred HHHHHhcC----------------------------------CCCEEEEcC
No 341
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=21.30 E-value=24 Score=28.97 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=29.8
Q ss_pred CCCcceeeeccCCCC--eeeccccccc-hhhhhhhccchhhhhhhhhhcccceeeecCh
Q 001337 373 DCSECYCVWCGRSSD--LVSCKSCKTL-FCTTCVKRNISEACLSDEVQASCWQCCCCSP 428 (1097)
Q Consensus 373 d~~~~~C~~C~~gg~--l~~Cd~C~~~-fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~~ 428 (1097)
...+..|.+|-+.-. .+.---|... ||..|+.... ...+.|++|..
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~----------~~~~~CPiCR~ 52 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLK----------KAGASCPICKK 52 (63)
T ss_dssp GGGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHH----------HTTCBCTTTCC
T ss_pred CCcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHH----------HhCCcCCCcCc
Confidence 344558999987532 3333357776 9999975432 12379999964
No 342
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=20.59 E-value=1.4e+02 Score=26.68 Aligned_cols=78 Identities=10% Similarity=-0.010 Sum_probs=44.8
Q ss_pred CCceeeccCCccchHHHHHHHhhcccc-cceeeEEEeeeccccccceecccceEEEEcCCcCCcccHHHHHHHhhhccc
Q 001337 1012 GKDWYRLDGRTESSERQKLVERFNEPL-NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRCMDK 1089 (1097)
Q Consensus 1012 Gi~~~ridGsts~~eR~~~i~~Fn~~~-n~~v~VlLiStkagg~GLNL~~An~VIi~D~~WNP~~~~QAiGRa~RiGQk 1089 (1097)
..+.+.+|-.++...-..+++..+... ...+.|+++|...-..-.....+...-++.-|+++....+++.++.+-+..
T Consensus 47 ~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 125 (133)
T 3nhm_A 47 PPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHALLARAEA 125 (133)
T ss_dssp CCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcc
Confidence 467788887776656666666666531 234566777765422222222222222455678999899999888765443
No 343
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=20.35 E-value=42 Score=29.48 Aligned_cols=17 Identities=29% Similarity=0.878 Sum_probs=14.5
Q ss_pred Ceeeccccccchhhhhh
Q 001337 387 DLVSCKSCKTLFCTTCV 403 (1097)
Q Consensus 387 ~l~~Cd~C~~~fc~~Cl 403 (1097)
..+.|..|.+.||..|-
T Consensus 42 ~~v~C~~C~~~FC~~C~ 58 (86)
T 2ct7_A 42 LEATCPQCHQTFCVRCK 58 (86)
T ss_dssp SCEECTTTCCEECSSSC
T ss_pred CceEeCCCCCccccccC
Confidence 34789999999999994
Done!