Query 001340
Match_columns 1096
No_of_seqs 738 out of 3516
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 22:16:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243 Kinesin-like protein [ 100.0 2.8E-87 6E-92 809.0 68.8 398 96-499 45-467 (1041)
2 KOG0245 Kinesin-like protein [ 100.0 2.7E-91 5.9E-96 825.8 30.0 379 99-478 3-414 (1221)
3 KOG4280 Kinesin-like protein [ 100.0 7.1E-89 1.5E-93 795.2 25.9 354 99-453 4-370 (574)
4 PLN03188 kinesin-12 family pro 100.0 1.3E-82 2.9E-87 773.7 80.7 356 91-454 89-468 (1320)
5 KOG0242 Kinesin-like protein [ 100.0 3.2E-86 6.8E-91 802.1 34.2 355 99-456 5-369 (675)
6 KOG0240 Kinesin (SMY1 subfamil 100.0 6.4E-84 1.4E-88 732.6 31.6 343 98-442 5-355 (607)
7 KOG0241 Kinesin-like protein [ 100.0 2.4E-82 5.2E-87 733.9 32.9 352 99-451 3-383 (1714)
8 cd01373 KISc_KLP2_like Kinesin 100.0 1.8E-79 4E-84 700.1 35.0 318 100-418 1-337 (337)
9 cd01370 KISc_KIP3_like Kinesin 100.0 1.7E-78 3.7E-83 692.4 35.1 318 101-418 1-338 (338)
10 cd01368 KISc_KIF23_like Kinesi 100.0 2.5E-76 5.4E-81 676.1 34.6 312 100-416 1-345 (345)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 5.8E-76 1.3E-80 676.6 36.8 326 100-425 1-356 (356)
12 cd01371 KISc_KIF3 Kinesin moto 100.0 2.4E-74 5.2E-79 657.6 36.1 319 100-418 1-333 (333)
13 cd01374 KISc_CENP_E Kinesin mo 100.0 2.3E-74 4.9E-79 655.0 35.7 317 101-418 1-321 (321)
14 cd01367 KISc_KIF2_like Kinesin 100.0 1.4E-74 3.1E-79 656.3 33.4 309 100-416 1-322 (322)
15 cd01364 KISc_BimC_Eg5 Kinesin 100.0 6.3E-74 1.4E-78 659.2 35.8 325 100-426 2-351 (352)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.8E-73 4E-78 648.7 35.8 317 100-418 2-325 (325)
17 cd01376 KISc_KID_like Kinesin 100.0 5E-73 1.1E-77 643.1 34.8 309 101-416 1-319 (319)
18 cd01375 KISc_KIF9_like Kinesin 100.0 1.2E-72 2.6E-77 643.6 34.7 312 101-416 1-334 (334)
19 cd01372 KISc_KIF4 Kinesin moto 100.0 1.6E-72 3.4E-77 645.2 35.1 316 101-419 2-341 (341)
20 cd01366 KISc_C_terminal Kinesi 100.0 9.7E-71 2.1E-75 627.5 36.3 318 99-420 1-328 (329)
21 smart00129 KISc Kinesin motor, 100.0 2.1E-69 4.6E-74 618.0 36.5 325 101-425 1-335 (335)
22 KOG0239 Kinesin (KAR3 subfamil 100.0 1.9E-70 4.2E-75 661.9 24.1 325 97-425 311-647 (670)
23 cd00106 KISc Kinesin motor dom 100.0 6.4E-68 1.4E-72 604.2 36.5 315 101-416 1-328 (328)
24 PF00225 Kinesin: Kinesin moto 100.0 7.2E-69 1.6E-73 613.6 24.2 312 107-418 1-335 (335)
25 KOG0246 Kinesin-like protein [ 100.0 3.1E-68 6.8E-73 601.6 27.8 319 97-422 205-545 (676)
26 KOG0244 Kinesin-like protein [ 100.0 8.6E-67 1.9E-71 622.2 32.6 338 108-452 1-350 (913)
27 KOG0247 Kinesin-like protein [ 100.0 4.7E-66 1E-70 599.0 31.6 329 95-425 26-443 (809)
28 COG5059 KIP1 Kinesin-like prot 100.0 4E-61 8.6E-66 579.0 27.7 342 97-446 19-364 (568)
29 cd01363 Motor_domain Myosin an 100.0 3E-48 6.4E-53 408.0 18.3 177 157-397 8-186 (186)
30 KOG0978 E3 ubiquitin ligase in 99.6 1.5E-13 3.3E-18 165.0 29.5 284 680-1095 377-697 (698)
31 KOG0612 Rho-associated, coiled 99.4 7.1E-12 1.5E-16 154.7 21.7 275 639-953 507-811 (1317)
32 KOG4265 Predicted E3 ubiquitin 99.2 1.4E-12 3E-17 144.9 -1.7 81 1015-1095 254-342 (349)
33 KOG4172 Predicted E3 ubiquitin 99.0 7.8E-12 1.7E-16 101.6 -3.5 49 1048-1096 8-61 (62)
34 KOG4275 Predicted E3 ubiquitin 98.9 4.1E-10 8.8E-15 120.9 0.1 50 1047-1096 300-349 (350)
35 PF13920 zf-C3HC4_3: Zinc fing 98.8 2.1E-09 4.6E-14 89.1 1.4 43 1048-1090 3-49 (50)
36 KOG1571 Predicted E3 ubiquitin 98.7 4.5E-09 9.8E-14 117.3 1.1 55 1042-1096 300-354 (355)
37 PF07888 CALCOCO1: Calcium bin 98.5 0.00021 4.7E-09 85.4 33.6 122 701-822 205-326 (546)
38 KOG1100 Predicted E3 ubiquitin 98.4 1.8E-07 3.8E-12 100.1 2.6 47 1049-1095 160-206 (207)
39 TIGR02169 SMC_prok_A chromosom 98.2 0.0029 6.3E-08 84.5 38.1 14 178-191 27-40 (1164)
40 PF07888 CALCOCO1: Calcium bin 98.1 0.0012 2.6E-08 79.3 28.6 26 884-909 355-380 (546)
41 KOG0823 Predicted E3 ubiquitin 98.1 1.1E-06 2.4E-11 93.3 2.8 51 1044-1095 44-103 (230)
42 TIGR02168 SMC_prok_B chromosom 98.1 0.0064 1.4E-07 81.2 37.7 16 176-191 25-40 (1179)
43 TIGR02169 SMC_prok_A chromosom 98.1 0.0071 1.5E-07 80.9 36.9 12 370-381 55-66 (1164)
44 TIGR02168 SMC_prok_B chromosom 98.0 0.0074 1.6E-07 80.6 35.4 75 770-844 794-868 (1179)
45 KOG4674 Uncharacterized conser 98.0 0.0056 1.2E-07 81.6 31.7 237 604-844 1063-1337(1822)
46 PF10174 Cast: RIM-binding pro 97.9 0.034 7.4E-07 70.3 37.3 229 602-844 115-366 (775)
47 KOG0161 Myosin class II heavy 97.9 0.0073 1.6E-07 81.8 32.6 179 638-822 1060-1260(1930)
48 PLN03208 E3 ubiquitin-protein 97.9 3.9E-06 8.4E-11 87.8 1.2 49 1046-1095 17-87 (193)
49 COG1196 Smc Chromosome segrega 97.9 0.016 3.5E-07 77.6 35.0 25 601-625 674-698 (1163)
50 PRK02224 chromosome segregatio 97.8 0.028 6E-07 73.4 35.6 88 639-732 348-442 (880)
51 PRK11637 AmiB activator; Provi 97.8 0.004 8.6E-08 74.5 24.8 86 638-736 45-130 (428)
52 KOG0317 Predicted E3 ubiquitin 97.8 6.9E-06 1.5E-10 89.7 1.1 46 1046-1092 238-287 (293)
53 KOG0971 Microtubule-associated 97.8 0.055 1.2E-06 67.1 33.6 13 606-618 229-241 (1243)
54 COG1196 Smc Chromosome segrega 97.8 0.062 1.3E-06 72.2 38.1 86 641-732 696-781 (1163)
55 KOG0161 Myosin class II heavy 97.7 0.048 1E-06 74.4 34.7 114 698-818 918-1031(1930)
56 PRK02224 chromosome segregatio 97.7 0.026 5.6E-07 73.6 32.0 15 177-191 26-40 (880)
57 KOG0976 Rho/Rac1-interacting s 97.7 0.054 1.2E-06 66.2 31.2 222 600-827 37-318 (1265)
58 PF09730 BicD: Microtubule-ass 97.7 0.13 2.9E-06 64.3 35.8 199 599-844 263-463 (717)
59 COG5059 KIP1 Kinesin-like prot 97.7 8.3E-07 1.8E-11 108.7 -9.5 250 98-361 303-566 (568)
60 KOG4673 Transcription factor T 97.6 0.28 6.2E-06 59.5 36.0 47 810-856 519-568 (961)
61 TIGR00606 rad50 rad50. This fa 97.6 0.11 2.3E-06 70.8 37.4 132 645-791 797-928 (1311)
62 TIGR00606 rad50 rad50. This fa 97.6 0.047 1E-06 74.2 33.9 52 889-940 987-1047(1311)
63 KOG0933 Structural maintenance 97.6 0.073 1.6E-06 67.0 31.7 88 644-732 712-803 (1174)
64 PHA02929 N1R/p28-like protein; 97.6 4.7E-05 1E-09 83.0 3.3 47 1047-1094 174-232 (238)
65 KOG0320 Predicted E3 ubiquitin 97.6 2.2E-05 4.8E-10 80.2 0.7 47 1048-1095 132-186 (187)
66 COG1579 Zn-ribbon protein, pos 97.5 0.015 3.3E-07 63.5 22.1 50 888-937 91-140 (239)
67 KOG0933 Structural maintenance 97.5 0.16 3.4E-06 64.2 33.0 89 749-837 792-880 (1174)
68 PF14634 zf-RING_5: zinc-RING 97.5 4.7E-05 1E-09 61.5 1.9 37 1049-1086 1-44 (44)
69 PF13923 zf-C3HC4_2: Zinc fing 97.5 3.6E-05 7.9E-10 60.4 0.9 34 1050-1084 1-39 (39)
70 PF15070 GOLGA2L5: Putative go 97.5 0.25 5.4E-06 61.6 34.0 47 891-937 337-383 (617)
71 PF09726 Macoilin: Transmembra 97.4 0.018 3.9E-07 72.4 24.4 35 811-845 542-576 (697)
72 PRK04863 mukB cell division pr 97.4 0.11 2.3E-06 70.6 32.4 18 175-192 28-45 (1486)
73 KOG2164 Predicted E3 ubiquitin 97.4 5E-05 1.1E-09 88.8 1.3 43 1047-1090 186-237 (513)
74 PRK03918 chromosome segregatio 97.4 0.37 8E-06 63.0 36.6 14 178-191 27-40 (880)
75 PF08826 DMPK_coil: DMPK coile 97.4 0.00057 1.2E-08 58.9 6.8 47 900-953 1-57 (61)
76 PF14662 CCDC155: Coiled-coil 97.4 0.16 3.4E-06 53.5 25.9 118 687-836 7-124 (193)
77 PF12128 DUF3584: Protein of u 97.3 0.18 4E-06 68.0 33.3 17 921-937 771-787 (1201)
78 KOG0994 Extracellular matrix g 97.3 0.38 8.3E-06 61.3 32.5 48 787-834 1599-1646(1758)
79 KOG0976 Rho/Rac1-interacting s 97.3 0.076 1.7E-06 65.0 25.9 58 676-733 101-158 (1265)
80 KOG4674 Uncharacterized conser 97.3 0.66 1.4E-05 62.9 36.8 228 703-953 580-823 (1822)
81 KOG0996 Structural maintenance 97.3 1.2 2.5E-05 57.8 42.4 238 602-847 779-1039(1293)
82 KOG0977 Nuclear envelope prote 97.3 0.33 7.2E-06 58.9 30.8 17 921-937 349-365 (546)
83 KOG0999 Microtubule-associated 97.2 0.14 3.1E-06 60.6 26.4 126 703-829 44-178 (772)
84 PRK11637 AmiB activator; Provi 97.2 0.11 2.4E-06 62.3 26.7 77 643-732 43-119 (428)
85 PF10174 Cast: RIM-binding pro 97.2 0.57 1.2E-05 59.7 33.4 87 640-732 287-373 (775)
86 PHA02562 46 endonuclease subun 97.2 0.043 9.2E-07 67.9 23.3 17 175-191 28-44 (562)
87 COG4372 Uncharacterized protei 97.1 0.25 5.4E-06 56.5 26.3 126 640-820 74-199 (499)
88 PF13639 zf-RING_2: Ring finge 97.1 0.00014 3E-09 58.6 0.8 36 1049-1085 2-44 (44)
89 TIGR00599 rad18 DNA repair pro 97.1 0.00016 3.5E-09 84.3 1.6 43 1047-1090 26-72 (397)
90 PHA02926 zinc finger-like prot 97.1 0.00012 2.6E-09 77.5 0.5 45 1048-1093 171-234 (242)
91 KOG4643 Uncharacterized coiled 97.1 0.27 5.8E-06 62.1 28.9 190 641-844 199-400 (1195)
92 PF12128 DUF3584: Protein of u 97.1 0.9 1.9E-05 61.5 36.8 65 767-831 471-535 (1201)
93 PHA02562 46 endonuclease subun 97.1 0.2 4.4E-06 61.9 28.8 33 703-735 214-246 (562)
94 PF00038 Filament: Intermediat 97.1 0.84 1.8E-05 52.2 35.2 57 677-733 71-134 (312)
95 COG5574 PEX10 RING-finger-cont 97.1 0.00016 3.6E-09 78.3 0.9 42 1047-1089 215-262 (271)
96 PF00261 Tropomyosin: Tropomyo 97.1 0.12 2.5E-06 57.2 22.9 148 683-844 3-150 (237)
97 PF00038 Filament: Intermediat 97.0 0.38 8.3E-06 55.0 28.0 54 679-732 52-112 (312)
98 KOG1785 Tyrosine kinase negati 97.0 0.00026 5.7E-09 79.7 1.8 44 1049-1093 371-420 (563)
99 PRK01156 chromosome segregatio 97.0 2.4 5.2E-05 55.7 38.2 16 176-191 25-40 (895)
100 PF09730 BicD: Microtubule-ass 97.0 1.6 3.4E-05 55.1 33.9 63 891-953 410-472 (717)
101 PRK04778 septation ring format 97.0 1.2 2.5E-05 55.6 33.2 208 712-940 278-495 (569)
102 KOG0963 Transcription factor/C 97.0 0.31 6.7E-06 59.2 26.5 84 645-737 187-270 (629)
103 KOG0996 Structural maintenance 97.0 0.9 1.9E-05 58.7 31.5 136 678-823 402-537 (1293)
104 PRK04863 mukB cell division pr 97.0 1 2.2E-05 61.6 34.4 45 749-793 440-484 (1486)
105 KOG4673 Transcription factor T 96.9 1.7 3.7E-05 53.2 32.7 19 601-619 423-441 (961)
106 PF15070 GOLGA2L5: Putative go 96.9 2 4.3E-05 53.8 34.2 92 642-733 45-139 (617)
107 smart00184 RING Ring finger. E 96.9 0.00058 1.2E-08 52.0 2.2 34 1050-1084 1-39 (39)
108 PF05701 WEMBL: Weak chloropla 96.9 0.42 9E-06 58.8 27.7 33 921-953 288-320 (522)
109 cd00162 RING RING-finger (Real 96.9 0.00071 1.5E-08 53.4 2.6 39 1049-1088 1-45 (45)
110 PF05667 DUF812: Protein of un 96.8 0.49 1.1E-05 58.8 27.9 104 681-790 426-530 (594)
111 COG5432 RAD18 RING-finger-cont 96.8 0.00041 8.8E-09 75.4 1.2 41 1049-1090 27-71 (391)
112 PF14447 Prok-RING_4: Prokaryo 96.8 0.00054 1.2E-08 57.3 1.6 41 1049-1090 9-51 (55)
113 PF04849 HAP1_N: HAP1 N-termin 96.8 0.66 1.4E-05 52.6 26.3 29 702-730 97-125 (306)
114 KOG0995 Centromere-associated 96.8 1 2.2E-05 54.5 29.0 90 704-818 296-385 (581)
115 KOG0287 Postreplication repair 96.8 0.00034 7.5E-09 77.5 0.5 41 1049-1090 25-69 (442)
116 PF15227 zf-C3HC4_4: zinc fing 96.8 0.00058 1.3E-08 54.7 1.5 34 1050-1084 1-42 (42)
117 PRK03918 chromosome segregatio 96.8 1.3 2.8E-05 58.0 32.9 26 600-625 157-182 (880)
118 KOG0250 DNA repair protein RAD 96.8 2 4.4E-05 55.5 32.5 85 703-787 275-359 (1074)
119 KOG4692 Predicted E3 ubiquitin 96.8 0.00079 1.7E-08 74.9 2.7 46 1046-1092 421-470 (489)
120 KOG0971 Microtubule-associated 96.7 1.1 2.5E-05 56.1 29.0 36 638-673 330-365 (1243)
121 PF00097 zf-C3HC4: Zinc finger 96.7 0.00058 1.3E-08 54.0 1.0 34 1050-1084 1-41 (41)
122 KOG0980 Actin-binding protein 96.7 3.1 6.6E-05 52.6 34.1 28 601-631 329-356 (980)
123 PF00261 Tropomyosin: Tropomyo 96.7 0.38 8.2E-06 53.2 23.0 89 755-843 131-219 (237)
124 KOG0250 DNA repair protein RAD 96.6 0.6 1.3E-05 60.1 26.6 189 640-844 281-477 (1074)
125 KOG0994 Extracellular matrix g 96.6 4 8.7E-05 52.7 33.8 18 405-422 1177-1194(1758)
126 PF09726 Macoilin: Transmembra 96.6 0.62 1.3E-05 59.0 26.7 72 766-844 588-659 (697)
127 smart00504 Ubox Modified RING 96.6 0.0012 2.7E-08 56.9 2.1 40 1049-1089 3-46 (63)
128 COG4942 Membrane-bound metallo 96.5 1.4 3.1E-05 51.9 26.9 68 608-692 38-105 (420)
129 KOG0612 Rho-associated, coiled 96.5 1.6 3.5E-05 56.8 28.9 79 757-835 573-651 (1317)
130 KOG0980 Actin-binding protein 96.4 1.4 3.1E-05 55.4 27.4 162 635-844 328-489 (980)
131 KOG0977 Nuclear envelope prote 96.4 3.7 8.1E-05 50.2 31.6 19 607-625 41-59 (546)
132 PRK10929 putative mechanosensi 96.3 1.8 3.9E-05 57.4 29.2 42 808-849 273-314 (1109)
133 PF13445 zf-RING_UBOX: RING-ty 96.3 0.0014 3E-08 52.8 0.6 27 1050-1078 1-31 (43)
134 KOG0963 Transcription factor/C 96.2 3.1 6.8E-05 50.9 28.3 117 702-836 189-307 (629)
135 PF05701 WEMBL: Weak chloropla 96.2 4.9 0.00011 49.7 34.4 135 679-827 279-413 (522)
136 COG5185 HEC1 Protein involved 96.1 1.7 3.6E-05 51.2 24.3 87 703-814 331-417 (622)
137 KOG4593 Mitotic checkpoint pro 96.1 5.7 0.00012 49.3 29.9 73 754-844 240-322 (716)
138 KOG0964 Structural maintenance 96.1 1.7 3.6E-05 55.3 25.6 56 764-819 264-319 (1200)
139 PF05622 HOOK: HOOK protein; 96.1 0.0016 3.4E-08 82.8 0.0 123 599-732 296-421 (713)
140 COG5236 Uncharacterized conser 96.1 0.0032 7E-08 70.0 2.3 46 1046-1092 60-111 (493)
141 KOG0946 ER-Golgi vesicle-tethe 96.0 0.7 1.5E-05 57.5 21.9 29 704-732 732-760 (970)
142 PRK11281 hypothetical protein; 96.0 3.7 7.9E-05 54.7 30.2 44 806-849 291-334 (1113)
143 PF14662 CCDC155: Coiled-coil 96.0 2.6 5.6E-05 44.7 25.0 20 918-937 169-188 (193)
144 PRK09039 hypothetical protein; 96.0 0.43 9.3E-06 55.6 19.4 145 644-822 43-187 (343)
145 KOG0964 Structural maintenance 95.9 6.1 0.00013 50.6 29.5 193 645-844 228-434 (1200)
146 KOG0249 LAR-interacting protei 95.9 1.2 2.7E-05 54.6 22.9 215 639-859 55-279 (916)
147 PRK11281 hypothetical protein; 95.9 9.1 0.0002 51.2 32.9 59 674-732 121-179 (1113)
148 PF06818 Fez1: Fez1; InterPro 95.9 1.1 2.3E-05 48.0 19.9 51 682-732 11-61 (202)
149 PF05667 DUF812: Protein of un 95.8 2.4 5.2E-05 52.8 25.8 59 774-832 421-479 (594)
150 PF04849 HAP1_N: HAP1 N-termin 95.8 2 4.3E-05 48.8 22.7 121 603-732 106-243 (306)
151 PF06160 EzrA: Septation ring 95.7 7.2 0.00016 48.6 29.9 305 603-939 163-490 (560)
152 KOG4643 Uncharacterized coiled 95.7 9.6 0.00021 49.0 33.1 49 799-847 508-556 (1195)
153 PF14835 zf-RING_6: zf-RING of 95.7 0.0057 1.2E-07 53.0 2.0 39 1049-1088 9-50 (65)
154 KOG2177 Predicted E3 ubiquitin 95.7 0.003 6.6E-08 70.2 0.4 39 1047-1086 13-55 (386)
155 COG5152 Uncharacterized conser 95.7 0.0028 6E-08 65.7 -0.0 51 1042-1093 191-245 (259)
156 KOG0978 E3 ubiquitin ligase in 95.7 2.4 5.2E-05 53.1 24.7 87 645-732 428-533 (698)
157 PF05483 SCP-1: Synaptonemal c 95.7 8.3 0.00018 47.7 33.4 71 774-844 494-564 (786)
158 COG1340 Uncharacterized archae 95.6 5.3 0.00011 45.2 34.0 55 678-732 66-123 (294)
159 KOG0962 DNA repair protein RAD 95.6 9.4 0.0002 50.8 30.5 129 698-844 822-950 (1294)
160 PRK09039 hypothetical protein; 95.6 1.5 3.3E-05 51.1 21.8 55 765-819 137-192 (343)
161 COG4942 Membrane-bound metallo 95.6 7.2 0.00016 46.3 30.4 48 890-937 200-247 (420)
162 COG5540 RING-finger-containing 95.6 0.0066 1.4E-07 66.9 2.1 41 1048-1089 324-372 (374)
163 KOG1813 Predicted E3 ubiquitin 95.5 0.0045 9.8E-08 68.3 0.9 46 1046-1092 240-289 (313)
164 COG1579 Zn-ribbon protein, pos 95.5 1.3 2.9E-05 48.7 19.7 54 679-732 29-82 (239)
165 KOG1029 Endocytic adaptor prot 95.4 7 0.00015 48.8 26.7 44 750-793 471-514 (1118)
166 KOG4593 Mitotic checkpoint pro 95.4 10 0.00023 47.1 32.9 149 682-844 364-512 (716)
167 PF14915 CCDC144C: CCDC144C pr 95.4 5.6 0.00012 44.9 23.8 140 701-841 143-298 (305)
168 KOG4687 Uncharacterized coiled 95.2 1.6 3.4E-05 48.0 18.5 181 716-937 9-204 (389)
169 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.2 1.5 3.4E-05 44.0 17.6 125 641-791 4-131 (132)
170 KOG1029 Endocytic adaptor prot 95.2 13 0.00027 46.7 30.6 77 768-844 440-516 (1118)
171 KOG0995 Centromere-associated 95.1 11 0.00024 45.9 34.6 96 603-702 261-360 (581)
172 TIGR03007 pepcterm_ChnLen poly 95.1 6.8 0.00015 47.9 26.4 173 603-789 163-348 (498)
173 PF05911 DUF869: Plant protein 95.1 15 0.00033 47.2 30.8 104 698-829 102-205 (769)
174 PF06160 EzrA: Septation ring 95.0 6.4 0.00014 49.1 25.9 64 888-951 346-409 (560)
175 KOG0946 ER-Golgi vesicle-tethe 95.0 3.7 8E-05 51.5 22.8 24 437-460 452-475 (970)
176 COG5243 HRD1 HRD ubiquitin lig 95.0 0.016 3.5E-07 65.4 2.9 44 1044-1088 284-344 (491)
177 PF10481 CENP-F_N: Cenp-F N-te 94.8 1.5 3.3E-05 48.3 17.2 82 757-838 52-133 (307)
178 PF09787 Golgin_A5: Golgin sub 94.8 14 0.00031 45.5 34.5 153 600-790 108-260 (511)
179 PRK04778 septation ring format 94.8 16 0.00034 45.8 36.9 59 778-836 281-339 (569)
180 KOG1853 LIS1-interacting prote 94.7 0.82 1.8E-05 49.7 14.7 126 803-937 48-180 (333)
181 PF15066 CAGE1: Cancer-associa 94.6 6 0.00013 46.8 22.3 120 703-840 325-448 (527)
182 KOG0239 Kinesin (KAR3 subfamil 94.6 0.017 3.7E-07 72.2 2.2 91 137-242 23-113 (670)
183 KOG0018 Structural maintenance 94.6 21 0.00046 46.5 32.9 21 599-619 650-670 (1141)
184 PF12718 Tropomyosin_1: Tropom 94.6 2.9 6.2E-05 42.7 17.8 47 686-732 5-51 (143)
185 PF05622 HOOK: HOOK protein; 94.5 0.01 2.2E-07 75.6 0.0 15 487-501 141-155 (713)
186 PRK01156 chromosome segregatio 94.5 23 0.00051 46.6 36.9 30 703-732 417-446 (895)
187 KOG4807 F-actin binding protei 94.5 12 0.00026 43.3 24.8 62 806-871 427-488 (593)
188 PF06818 Fez1: Fez1; InterPro 94.4 3.3 7.2E-05 44.4 18.4 97 601-728 10-106 (202)
189 PF12678 zf-rbx1: RING-H2 zinc 94.4 0.023 5E-07 51.1 2.0 36 1049-1085 21-73 (73)
190 PRK10929 putative mechanosensi 94.4 27 0.00058 46.8 32.2 90 643-732 68-160 (1109)
191 PF13514 AAA_27: AAA domain 94.3 29 0.00063 47.0 31.7 135 701-844 241-383 (1111)
192 PF05557 MAD: Mitotic checkpoi 94.1 0.014 3E-07 74.5 0.0 19 827-845 311-329 (722)
193 PF05557 MAD: Mitotic checkpoi 94.1 0.014 3E-07 74.5 0.0 26 813-838 256-281 (722)
194 PF09755 DUF2046: Uncharacteri 94.1 14 0.0003 42.2 29.5 31 763-793 176-206 (310)
195 KOG2879 Predicted E3 ubiquitin 94.0 0.031 6.8E-07 61.2 2.5 44 1045-1089 237-287 (298)
196 COG3096 MukB Uncharacterized p 94.0 21 0.00045 44.5 25.6 55 679-733 346-400 (1480)
197 PF08614 ATG16: Autophagy prot 94.0 0.62 1.3E-05 49.9 12.2 49 767-836 139-187 (194)
198 PF09789 DUF2353: Uncharacteri 93.7 16 0.00035 42.0 32.2 141 681-840 68-215 (319)
199 PF04564 U-box: U-box domain; 93.7 0.037 8E-07 49.7 1.9 44 1046-1090 3-51 (73)
200 PF15619 Lebercilin: Ciliary p 93.6 6.1 0.00013 42.5 18.6 28 703-730 83-110 (194)
201 KOG0579 Ste20-like serine/thre 93.5 5.7 0.00012 48.9 19.8 129 755-913 842-977 (1187)
202 KOG0802 E3 ubiquitin ligase [P 93.5 0.026 5.7E-07 69.6 0.8 40 1048-1088 292-340 (543)
203 TIGR01843 type_I_hlyD type I s 93.4 15 0.00033 43.5 24.1 32 701-732 157-188 (423)
204 COG1340 Uncharacterized archae 93.3 18 0.00038 41.2 27.1 58 752-809 159-216 (294)
205 KOG4159 Predicted E3 ubiquitin 93.3 0.045 9.7E-07 64.3 2.2 45 1045-1090 82-130 (398)
206 PF00308 Bac_DnaA: Bacterial d 93.2 0.052 1.1E-06 59.1 2.6 50 140-192 3-52 (219)
207 PF01576 Myosin_tail_1: Myosin 93.2 0.026 5.5E-07 73.1 0.0 153 640-793 60-229 (859)
208 KOG2113 Predicted RNA binding 93.0 0.072 1.6E-06 59.2 3.2 53 1042-1094 338-392 (394)
209 KOG0979 Structural maintenance 93.0 33 0.00072 44.6 26.2 154 690-844 176-341 (1072)
210 TIGR02680 conserved hypothetic 92.9 52 0.0011 45.5 30.5 44 612-663 729-772 (1353)
211 PF10168 Nup88: Nuclear pore c 92.9 8.7 0.00019 49.2 21.7 76 701-779 638-713 (717)
212 COG0556 UvrB Helicase subunit 92.9 0.21 4.5E-06 59.8 6.8 89 141-234 4-100 (663)
213 PF06785 UPF0242: Uncharacteri 92.7 11 0.00023 43.0 19.3 64 779-842 99-162 (401)
214 PF04641 Rtf2: Rtf2 RING-finge 92.6 0.072 1.6E-06 59.6 2.6 46 1045-1091 111-163 (260)
215 PRK14086 dnaA chromosomal repl 92.5 0.92 2E-05 56.4 12.1 50 140-192 283-332 (617)
216 COG2433 Uncharacterized conser 92.5 6.9 0.00015 48.0 18.7 72 661-732 282-368 (652)
217 TIGR03185 DNA_S_dndD DNA sulfu 92.4 40 0.00086 42.9 33.5 84 638-737 207-290 (650)
218 PF13851 GAS: Growth-arrest sp 92.3 19 0.00041 38.9 20.9 121 696-847 49-169 (201)
219 KOG4360 Uncharacterized coiled 92.3 16 0.00034 44.0 20.8 89 701-795 96-189 (596)
220 PF15254 CCDC14: Coiled-coil d 92.2 15 0.00032 46.3 21.3 82 755-836 459-544 (861)
221 PF15619 Lebercilin: Ciliary p 92.2 19 0.00041 38.7 23.1 85 759-844 62-148 (194)
222 PF09789 DUF2353: Uncharacteri 92.2 4.3 9.4E-05 46.6 16.0 89 751-839 9-97 (319)
223 COG4372 Uncharacterized protei 92.2 28 0.00061 40.6 29.6 117 599-732 72-188 (499)
224 PRK06893 DNA replication initi 92.1 0.14 3E-06 56.2 4.0 48 139-192 10-57 (229)
225 KOG0311 Predicted E3 ubiquitin 92.1 0.018 3.9E-07 65.0 -2.9 42 1049-1091 45-92 (381)
226 KOG0825 PHD Zn-finger protein 92.0 0.037 8E-07 67.6 -0.8 46 1048-1094 124-176 (1134)
227 KOG0249 LAR-interacting protei 91.8 19 0.00041 44.9 21.3 32 805-836 154-185 (916)
228 PF07111 HCR: Alpha helical co 91.7 44 0.00096 41.9 31.5 99 602-700 198-321 (739)
229 PRK06620 hypothetical protein; 91.7 0.12 2.5E-06 56.3 2.8 51 138-192 9-62 (214)
230 KOG0982 Centrosomal protein Nu 91.6 8 0.00017 45.4 17.1 18 715-732 249-266 (502)
231 KOG4628 Predicted E3 ubiquitin 91.4 0.093 2E-06 60.3 1.7 41 1049-1090 231-279 (348)
232 KOG1103 Predicted coiled-coil 91.4 22 0.00047 40.6 19.8 47 801-847 246-292 (561)
233 COG2804 PulE Type II secretory 91.4 0.34 7.4E-06 58.2 6.4 31 162-192 246-276 (500)
234 PF05483 SCP-1: Synaptonemal c 91.3 48 0.001 41.5 33.0 49 681-729 370-418 (786)
235 TIGR02680 conserved hypothetic 91.3 78 0.0017 43.9 32.9 17 176-192 26-42 (1353)
236 KOG4360 Uncharacterized coiled 91.2 12 0.00026 44.9 18.4 29 704-732 161-189 (596)
237 PF01576 Myosin_tail_1: Myosin 91.1 0.063 1.4E-06 69.6 0.0 25 808-832 336-360 (859)
238 KOG0018 Structural maintenance 91.1 62 0.0014 42.5 30.0 116 675-791 235-350 (1141)
239 COG3883 Uncharacterized protei 91.0 23 0.0005 39.7 19.6 142 760-920 33-182 (265)
240 TIGR00634 recN DNA repair prot 91.0 27 0.00058 43.7 22.8 27 808-834 347-373 (563)
241 COG0419 SbcC ATPase involved i 90.9 68 0.0015 42.5 35.8 25 175-199 26-57 (908)
242 PF13870 DUF4201: Domain of un 90.8 24 0.00052 37.2 19.1 89 638-732 47-135 (177)
243 KOG1001 Helicase-like transcri 90.8 0.083 1.8E-06 66.3 0.6 40 1048-1089 455-500 (674)
244 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.7 4.6 9.9E-05 40.6 12.8 80 752-832 47-130 (132)
245 PF13514 AAA_27: AAA domain 90.6 81 0.0018 42.9 38.8 155 688-844 666-831 (1111)
246 TIGR01005 eps_transp_fam exopo 90.3 36 0.00077 44.1 23.8 19 645-663 199-217 (754)
247 PF07058 Myosin_HC-like: Myosi 90.3 8.2 0.00018 43.5 15.1 118 698-844 17-144 (351)
248 KOG4677 Golgi integral membran 90.0 18 0.00039 42.8 18.1 49 686-734 307-355 (554)
249 PF08614 ATG16: Autophagy prot 90.0 1.5 3.4E-05 46.9 9.3 55 678-732 120-174 (194)
250 COG2805 PilT Tfp pilus assembl 89.9 0.18 3.9E-06 56.8 2.2 31 162-192 113-143 (353)
251 KOG1039 Predicted E3 ubiquitin 89.9 0.14 3E-06 59.2 1.3 46 1047-1093 161-225 (344)
252 KOG2991 Splicing regulator [RN 89.9 5 0.00011 44.0 12.8 53 680-732 107-159 (330)
253 PF14197 Cep57_CLD_2: Centroso 89.9 3.2 6.8E-05 37.1 9.5 20 815-834 48-67 (69)
254 KOG1853 LIS1-interacting prote 89.8 15 0.00033 40.3 16.3 46 807-856 133-178 (333)
255 COG3883 Uncharacterized protei 89.6 40 0.00087 37.9 23.0 62 759-820 149-217 (265)
256 KOG2129 Uncharacterized conser 89.6 50 0.0011 38.9 24.7 67 601-672 50-118 (552)
257 PF15035 Rootletin: Ciliary ro 89.6 32 0.00069 36.7 18.8 91 642-732 18-111 (182)
258 KOG0828 Predicted E3 ubiquitin 89.4 0.1 2.2E-06 61.1 -0.1 41 1048-1089 572-634 (636)
259 PF08172 CASP_C: CASP C termin 89.1 6.3 0.00014 43.9 13.5 99 705-830 2-130 (248)
260 PF06785 UPF0242: Uncharacteri 89.0 23 0.00049 40.5 17.4 61 759-819 195-260 (401)
261 KOG2991 Splicing regulator [RN 88.9 42 0.00091 37.1 22.5 164 644-827 119-305 (330)
262 PF07111 HCR: Alpha helical co 88.9 75 0.0016 40.1 34.2 183 640-844 324-544 (739)
263 KOG3002 Zn finger protein [Gen 88.8 0.2 4.4E-06 56.9 1.6 40 1049-1090 50-92 (299)
264 PF06005 DUF904: Protein of un 88.8 4.7 0.0001 36.3 9.9 58 767-845 6-63 (72)
265 PRK10884 SH3 domain-containing 88.7 5 0.00011 43.5 12.0 14 777-790 137-150 (206)
266 KOG1814 Predicted E3 ubiquitin 88.7 0.16 3.4E-06 58.8 0.6 30 1047-1077 184-216 (445)
267 KOG0999 Microtubule-associated 88.6 67 0.0015 39.2 33.7 44 750-793 148-191 (772)
268 PF04111 APG6: Autophagy prote 88.6 4.6 9.9E-05 46.6 12.4 30 703-732 58-87 (314)
269 PF12861 zf-Apc11: Anaphase-pr 88.6 0.27 5.9E-06 45.4 2.0 30 1059-1089 46-82 (85)
270 PRK00149 dnaA chromosomal repl 88.4 0.29 6.3E-06 59.1 2.7 50 140-192 117-166 (450)
271 TIGR03007 pepcterm_ChnLen poly 88.2 60 0.0013 39.7 22.6 29 704-732 206-234 (498)
272 PRK12377 putative replication 88.2 0.38 8.2E-06 53.6 3.2 51 141-193 70-120 (248)
273 PF08317 Spc7: Spc7 kinetochor 88.1 58 0.0013 37.8 27.4 173 599-793 66-251 (325)
274 PRK08116 hypothetical protein; 88.0 0.31 6.7E-06 54.9 2.4 51 140-192 80-132 (268)
275 PRK05642 DNA replication initi 87.9 0.45 9.8E-06 52.4 3.6 48 138-192 12-63 (234)
276 TIGR01005 eps_transp_fam exopo 87.9 67 0.0014 41.6 23.8 29 603-631 196-224 (754)
277 KOG3039 Uncharacterized conser 87.9 0.3 6.6E-06 52.8 2.1 44 1047-1091 221-272 (303)
278 TIGR03017 EpsF chain length de 87.9 70 0.0015 38.5 25.4 62 603-664 173-239 (444)
279 PRK08084 DNA replication initi 87.6 0.48 1E-05 52.2 3.6 49 138-192 15-63 (235)
280 PRK06526 transposase; Provisio 87.4 0.27 5.8E-06 54.9 1.5 45 144-193 73-117 (254)
281 PRK14087 dnaA chromosomal repl 87.3 0.35 7.6E-06 58.4 2.5 49 141-192 111-159 (450)
282 PF10267 Tmemb_cc2: Predicted 87.3 73 0.0016 38.0 30.1 20 432-451 4-23 (395)
283 KOG1937 Uncharacterized conser 87.2 73 0.0016 38.1 26.6 46 779-829 366-411 (521)
284 PF10481 CENP-F_N: Cenp-F N-te 87.2 40 0.00087 37.7 17.6 156 678-834 22-189 (307)
285 PRK09087 hypothetical protein; 87.1 0.5 1.1E-05 51.8 3.3 50 137-192 13-62 (226)
286 PRK14088 dnaA chromosomal repl 87.0 0.37 8E-06 58.1 2.4 49 140-192 100-148 (440)
287 PF12325 TMF_TATA_bd: TATA ele 86.9 28 0.00061 34.6 14.9 22 642-663 18-39 (120)
288 PF10168 Nup88: Nuclear pore c 86.6 41 0.00089 43.3 20.2 79 761-842 575-653 (717)
289 KOG0962 DNA repair protein RAD 86.5 1.4E+02 0.003 40.5 31.0 29 709-737 878-906 (1294)
290 PF04111 APG6: Autophagy prote 86.5 3.9 8.4E-05 47.2 10.3 23 814-836 99-121 (314)
291 TIGR03185 DNA_S_dndD DNA sulfu 86.5 1.1E+02 0.0023 39.1 35.9 74 764-842 390-463 (650)
292 PF10212 TTKRSYEDQ: Predicted 86.2 66 0.0014 39.3 20.3 77 770-849 418-494 (518)
293 PF10473 CENP-F_leu_zip: Leuci 86.1 43 0.00093 34.2 19.0 36 696-731 46-81 (140)
294 TIGR00362 DnaA chromosomal rep 86.1 0.49 1.1E-05 56.3 2.8 50 140-192 105-154 (405)
295 COG0419 SbcC ATPase involved i 85.8 1.4E+02 0.003 39.8 34.7 16 434-449 180-195 (908)
296 PRK06835 DNA replication prote 85.6 0.33 7E-06 56.3 0.9 36 156-193 167-202 (329)
297 PF09787 Golgin_A5: Golgin sub 85.3 1.1E+02 0.0023 38.0 28.5 77 765-844 274-353 (511)
298 PF10186 Atg14: UV radiation r 85.2 44 0.00096 37.6 18.0 15 938-952 202-216 (302)
299 PRK07952 DNA replication prote 84.9 0.71 1.5E-05 51.3 3.1 51 141-193 68-118 (244)
300 KOG4005 Transcription factor X 84.8 4.1 8.9E-05 44.1 8.5 57 768-845 93-149 (292)
301 PRK10884 SH3 domain-containing 84.8 9.1 0.0002 41.5 11.4 48 678-732 122-169 (206)
302 PF09728 Taxilin: Myosin-like 84.6 84 0.0018 36.3 31.2 133 680-829 134-266 (309)
303 COG1474 CDC6 Cdc6-related prot 84.6 1.3 2.9E-05 52.0 5.4 26 166-191 33-59 (366)
304 KOG0243 Kinesin-like protein [ 84.6 76 0.0016 41.9 20.9 32 701-732 482-513 (1041)
305 PF05911 DUF869: Plant protein 84.6 48 0.0011 42.8 19.3 22 342-363 107-128 (769)
306 TIGR03420 DnaA_homol_Hda DnaA 84.5 0.83 1.8E-05 49.3 3.5 50 137-192 7-56 (226)
307 COG4026 Uncharacterized protei 84.5 19 0.0004 39.0 13.0 44 768-832 145-188 (290)
308 PRK08903 DnaA regulatory inact 84.4 0.96 2.1E-05 49.2 3.9 52 136-192 9-60 (227)
309 TIGR01843 type_I_hlyD type I s 84.4 95 0.0021 36.7 24.2 27 706-732 78-104 (423)
310 PF08317 Spc7: Spc7 kinetochor 84.0 91 0.002 36.2 28.5 42 896-937 247-292 (325)
311 smart00787 Spc7 Spc7 kinetocho 84.0 90 0.002 36.2 27.2 179 597-793 59-246 (312)
312 PF06005 DUF904: Protein of un 83.9 15 0.00032 33.2 10.5 28 766-793 26-53 (72)
313 PF13870 DUF4201: Domain of un 83.5 63 0.0014 34.0 19.6 36 697-732 44-79 (177)
314 TIGR02928 orc1/cdc6 family rep 83.5 1 2.2E-05 52.5 3.8 25 167-191 32-57 (365)
315 PF09738 DUF2051: Double stran 83.4 46 0.00099 38.3 16.8 18 920-937 282-299 (302)
316 PF07058 Myosin_HC-like: Myosi 83.2 31 0.00068 39.1 14.7 109 794-937 49-159 (351)
317 PRK08181 transposase; Validate 83.0 1.1 2.3E-05 50.7 3.5 45 144-193 80-125 (269)
318 PF00769 ERM: Ezrin/radixin/mo 82.9 41 0.0009 37.5 16.0 18 929-953 183-200 (246)
319 PF12718 Tropomyosin_1: Tropom 82.7 60 0.0013 33.2 18.1 113 640-793 21-136 (143)
320 PF04156 IncA: IncA protein; 82.7 51 0.0011 34.9 16.1 27 703-729 124-150 (191)
321 PF14073 Cep57_CLD: Centrosome 82.6 62 0.0013 34.3 15.9 30 703-732 58-87 (178)
322 PRK00411 cdc6 cell division co 82.5 1.1 2.4E-05 52.8 3.7 36 155-191 36-72 (394)
323 PF05010 TACC: Transforming ac 82.1 82 0.0018 34.3 23.5 107 702-818 23-129 (207)
324 PRK08939 primosomal protein Dn 82.0 0.74 1.6E-05 52.9 1.9 51 142-193 124-175 (306)
325 COG0497 RecN ATPase involved i 82.0 1.3E+02 0.0028 37.6 20.6 40 601-640 171-210 (557)
326 PF04851 ResIII: Type III rest 81.9 0.81 1.8E-05 47.0 2.0 30 164-193 14-44 (184)
327 COG0593 DnaA ATPase involved i 81.9 0.94 2E-05 53.7 2.7 51 139-192 81-131 (408)
328 PF11559 ADIP: Afadin- and alp 81.9 53 0.0011 33.6 15.2 46 687-732 37-82 (151)
329 PRK10869 recombination and rep 81.8 97 0.0021 38.7 20.3 14 178-191 26-39 (553)
330 KOG4809 Rab6 GTPase-interactin 81.7 1.4E+02 0.003 36.7 21.6 63 755-820 421-483 (654)
331 smart00787 Spc7 Spc7 kinetocho 81.5 1.1E+02 0.0024 35.4 23.0 132 776-937 148-287 (312)
332 TIGR00634 recN DNA repair prot 81.5 1.5E+02 0.0033 37.0 24.4 35 703-737 169-203 (563)
333 PRK08727 hypothetical protein; 81.5 1.3 2.7E-05 48.8 3.4 47 138-192 12-59 (233)
334 PLN03229 acetyl-coenzyme A car 81.4 1.7E+02 0.0037 37.5 26.0 37 897-937 692-728 (762)
335 PF06156 DUF972: Protein of un 81.3 5.4 0.00012 38.8 7.2 41 753-793 10-50 (107)
336 KOG1002 Nucleotide excision re 81.2 0.42 9.1E-06 56.5 -0.4 40 1048-1088 537-585 (791)
337 KOG4302 Microtubule-associated 81.1 1.7E+02 0.0037 37.2 28.8 91 620-732 48-140 (660)
338 PF12795 MscS_porin: Mechanose 81.0 95 0.0021 34.3 24.4 90 643-732 41-136 (240)
339 KOG2113 Predicted RNA binding 81.0 0.54 1.2E-05 52.5 0.3 48 1047-1094 136-188 (394)
340 PF14915 CCDC144C: CCDC144C pr 80.6 1.1E+02 0.0024 34.9 27.3 20 644-663 28-47 (305)
341 PLN00020 ribulose bisphosphate 80.4 3.3 7.2E-05 48.6 6.4 51 140-190 110-164 (413)
342 PF04012 PspA_IM30: PspA/IM30 80.3 94 0.002 33.8 24.3 82 761-844 47-128 (221)
343 KOG1962 B-cell receptor-associ 80.2 18 0.0004 39.3 11.4 81 719-831 130-210 (216)
344 PF03962 Mnd1: Mnd1 family; I 80.1 33 0.00071 36.8 13.3 103 701-849 61-167 (188)
345 PF10186 Atg14: UV radiation r 79.9 1.1E+02 0.0023 34.5 18.5 30 807-836 119-148 (302)
346 PRK15422 septal ring assembly 79.9 25 0.00054 32.2 10.2 42 752-793 5-46 (79)
347 KOG0804 Cytoplasmic Zn-finger 79.7 42 0.00091 40.0 14.8 38 695-732 354-391 (493)
348 PLN02939 transferase, transfer 79.5 2.3E+02 0.0049 37.8 25.3 111 706-822 223-339 (977)
349 PF15254 CCDC14: Coiled-coil d 79.5 1.9E+02 0.0042 37.0 24.0 69 771-839 486-554 (861)
350 PF04156 IncA: IncA protein; 79.4 52 0.0011 34.9 14.7 26 707-732 86-111 (191)
351 PF14988 DUF4515: Domain of un 79.2 1E+02 0.0022 33.6 22.6 17 813-829 155-171 (206)
352 PRK10869 recombination and rep 79.2 1.8E+02 0.0039 36.4 23.8 48 640-687 171-218 (553)
353 cd00009 AAA The AAA+ (ATPases 79.1 1.4 3E-05 42.7 2.6 27 165-191 10-36 (151)
354 PF11559 ADIP: Afadin- and alp 78.7 51 0.0011 33.7 13.9 84 761-844 48-131 (151)
355 PF07798 DUF1640: Protein of u 78.7 93 0.002 32.9 16.4 23 819-841 136-158 (177)
356 KOG0979 Structural maintenance 78.6 2.3E+02 0.005 37.4 26.6 64 771-838 293-356 (1072)
357 COG3096 MukB Uncharacterized p 78.5 2E+02 0.0043 36.6 26.7 46 897-942 1060-1108(1480)
358 PRK10361 DNA recombination pro 78.5 1.7E+02 0.0037 35.8 23.9 54 771-834 139-192 (475)
359 PRK13169 DNA replication intia 78.3 7.7 0.00017 37.9 7.1 41 753-793 10-50 (110)
360 PF09744 Jnk-SapK_ap_N: JNK_SA 77.8 75 0.0016 33.2 14.6 23 770-792 87-109 (158)
361 KOG0982 Centrosomal protein Nu 77.7 1.6E+02 0.0035 35.1 23.9 30 703-732 298-327 (502)
362 PF06548 Kinesin-related: Kine 77.7 1.7E+02 0.0036 35.3 21.3 33 701-733 201-239 (488)
363 PF11932 DUF3450: Protein of u 77.7 26 0.00056 39.1 12.3 17 897-913 128-144 (251)
364 PTZ00454 26S protease regulato 77.4 1.6 3.5E-05 51.9 2.8 90 102-191 89-196 (398)
365 PF00769 ERM: Ezrin/radixin/mo 77.4 92 0.002 34.8 16.4 27 703-729 20-46 (246)
366 TIGR01000 bacteriocin_acc bact 77.2 1.8E+02 0.0039 35.3 24.0 24 709-732 172-195 (457)
367 PF10235 Cript: Microtubule-as 77.0 1.4 2.9E-05 41.3 1.6 38 1047-1090 44-81 (90)
368 PF11932 DUF3450: Protein of u 76.9 1.2E+02 0.0025 33.9 17.2 23 771-793 41-63 (251)
369 PTZ00361 26 proteosome regulat 76.6 2.9 6.3E-05 50.4 4.7 89 103-191 128-234 (438)
370 PF10473 CENP-F_leu_zip: Leuci 76.4 95 0.0021 31.8 20.1 75 767-841 12-86 (140)
371 PF10146 zf-C4H2: Zinc finger- 76.2 91 0.002 34.5 15.6 63 767-829 34-96 (230)
372 COG2433 Uncharacterized conser 76.2 32 0.00069 42.5 12.9 35 893-927 474-508 (652)
373 PRK06921 hypothetical protein; 76.1 1.9 4.2E-05 48.5 2.8 35 157-192 98-135 (266)
374 PRK10698 phage shock protein P 76.1 1.3E+02 0.0028 33.1 19.7 78 755-834 42-133 (222)
375 PF13851 GAS: Growth-arrest sp 76.1 1.2E+02 0.0026 32.8 22.5 23 771-793 149-171 (201)
376 PF15066 CAGE1: Cancer-associa 76.1 1.9E+02 0.0041 35.0 21.3 82 753-834 347-431 (527)
377 PRK03992 proteasome-activating 75.8 2.3 5E-05 50.5 3.5 51 141-191 127-182 (389)
378 COG5175 MOT2 Transcriptional r 75.6 1 2.2E-05 50.8 0.4 41 1049-1090 16-65 (480)
379 KOG0826 Predicted E3 ubiquitin 75.5 0.74 1.6E-05 52.0 -0.7 50 1046-1095 299-354 (357)
380 PLN03229 acetyl-coenzyme A car 75.2 1.5E+02 0.0033 37.9 18.7 93 642-737 560-663 (762)
381 PF13245 AAA_19: Part of AAA d 75.2 1.6 3.5E-05 39.5 1.6 26 166-192 3-28 (76)
382 PRK10436 hypothetical protein; 75.0 1.5 3.3E-05 53.2 1.7 28 165-192 209-236 (462)
383 cd00046 DEXDc DEAD-like helica 74.8 1.2 2.7E-05 42.6 0.8 17 177-193 3-19 (144)
384 KOG2932 E3 ubiquitin ligase in 74.7 1.1 2.3E-05 50.2 0.3 41 1048-1090 91-135 (389)
385 COG4477 EzrA Negative regulato 74.7 2.2E+02 0.0047 35.1 31.8 120 711-830 276-405 (570)
386 KOG0989 Replication factor C, 74.4 2.4 5.2E-05 48.2 2.9 36 157-192 39-75 (346)
387 PTZ00112 origin recognition co 74.3 2.8 6.1E-05 53.8 3.8 22 171-192 778-799 (1164)
388 KOG0297 TNF receptor-associate 74.0 1.6 3.4E-05 51.9 1.5 44 1047-1091 21-69 (391)
389 TIGR02538 type_IV_pilB type IV 74.0 1.7 3.6E-05 54.2 1.8 28 165-192 307-334 (564)
390 PF05290 Baculo_IE-1: Baculovi 74.0 2.5 5.4E-05 42.1 2.6 60 1031-1091 64-134 (140)
391 KOG3842 Adaptor protein Pellin 73.9 1.8 3.9E-05 48.5 1.8 37 256-299 63-99 (429)
392 PF12325 TMF_TATA_bd: TATA ele 73.8 1E+02 0.0022 30.8 15.1 29 765-793 23-51 (120)
393 KOG1937 Uncharacterized conser 73.8 2.1E+02 0.0045 34.5 27.6 35 751-785 389-423 (521)
394 KOG0288 WD40 repeat protein Ti 73.6 54 0.0012 38.7 13.4 29 755-783 45-73 (459)
395 PF12795 MscS_porin: Mechanose 73.5 1.5E+02 0.0033 32.7 19.4 31 701-731 37-67 (240)
396 TIGR02533 type_II_gspE general 73.5 2 4.3E-05 52.5 2.2 28 165-192 233-260 (486)
397 PRK12422 chromosomal replicati 73.2 2.4 5.1E-05 51.3 2.8 51 139-192 105-159 (445)
398 KOG0804 Cytoplasmic Zn-finger 73.2 31 0.00066 41.1 11.4 29 704-732 391-419 (493)
399 TIGR01242 26Sp45 26S proteasom 73.1 3 6.5E-05 48.9 3.6 51 141-191 118-173 (364)
400 KOG1962 B-cell receptor-associ 72.9 17 0.00036 39.6 8.7 57 698-789 154-210 (216)
401 KOG4438 Centromere-associated 72.3 2.2E+02 0.0048 34.1 27.4 114 707-834 214-333 (446)
402 PF13401 AAA_22: AAA domain; P 72.2 1.3 2.9E-05 43.1 0.3 19 174-192 4-22 (131)
403 PF00270 DEAD: DEAD/DEAH box h 72.1 2.2 4.8E-05 43.3 1.9 26 165-192 7-32 (169)
404 KOG4809 Rab6 GTPase-interactin 71.8 2.5E+02 0.0055 34.6 25.0 135 703-844 244-403 (654)
405 PF00437 T2SE: Type II/IV secr 71.6 1.9 4.1E-05 48.2 1.3 19 174-192 127-145 (270)
406 PF10211 Ax_dynein_light: Axon 71.2 57 0.0012 34.9 12.3 60 766-831 128-187 (189)
407 KOG2008 BTK-associated SH3-dom 71.1 2E+02 0.0043 33.0 17.3 51 752-802 53-106 (426)
408 KOG1003 Actin filament-coating 71.1 1.5E+02 0.0034 31.8 23.8 106 690-837 83-188 (205)
409 PF10272 Tmpp129: Putative tra 70.9 5.9 0.00013 46.3 5.1 44 1020-1063 243-287 (358)
410 PF15397 DUF4618: Domain of un 70.8 1.9E+02 0.0041 32.6 23.2 140 683-845 65-210 (258)
411 PRK09183 transposase/IS protei 70.5 2.4 5.3E-05 47.4 1.9 45 144-193 77-121 (259)
412 TIGR01420 pilT_fam pilus retra 70.4 2.4 5.2E-05 49.4 2.0 28 165-192 113-140 (343)
413 TIGR02525 plasmid_TraJ plasmid 70.4 2.5 5.5E-05 49.8 2.1 20 173-192 148-167 (372)
414 COG1484 DnaC DNA replication p 70.3 3.6 7.8E-05 46.0 3.2 50 141-193 75-124 (254)
415 KOG1850 Myosin-like coiled-coi 70.3 2.1E+02 0.0045 33.0 28.6 55 768-822 211-265 (391)
416 smart00382 AAA ATPases associa 70.2 1.9 4E-05 41.3 0.8 18 175-192 3-20 (148)
417 cd01131 PilT Pilus retraction 70.2 1.9 4E-05 46.2 0.9 19 174-192 1-19 (198)
418 PF14197 Cep57_CLD_2: Centroso 70.2 29 0.00062 31.1 8.1 55 678-732 9-63 (69)
419 PF01935 DUF87: Domain of unkn 70.2 1.8 3.8E-05 47.1 0.7 16 177-192 26-41 (229)
420 COG1222 RPT1 ATP-dependent 26S 70.1 5.1 0.00011 46.5 4.3 116 100-215 93-243 (406)
421 PF15035 Rootletin: Ciliary ro 69.5 1.6E+02 0.0035 31.4 15.6 52 769-834 71-122 (182)
422 PF10498 IFT57: Intra-flagella 69.4 1.3E+02 0.0029 35.5 15.8 25 640-664 241-265 (359)
423 PF13604 AAA_30: AAA domain; P 69.4 2.8 6E-05 44.9 2.0 28 165-192 9-36 (196)
424 TIGR01010 BexC_CtrB_KpsE polys 69.1 1.6E+02 0.0035 34.4 16.8 88 600-692 169-260 (362)
425 TIGR00631 uvrb excinuclease AB 69.0 4.6 0.0001 51.2 4.1 88 142-234 2-97 (655)
426 TIGR02524 dot_icm_DotB Dot/Icm 68.8 2.8 6E-05 49.3 2.0 20 173-192 133-152 (358)
427 TIGR03015 pepcterm_ATPase puta 68.8 3.7 8.1E-05 45.5 2.9 24 168-191 37-60 (269)
428 TIGR03319 YmdA_YtgF conserved 68.6 2.5E+02 0.0054 34.9 18.7 32 904-935 263-298 (514)
429 PRK12704 phosphodiesterase; Pr 68.5 2.5E+02 0.0055 34.9 18.7 15 797-811 155-169 (520)
430 PF12846 AAA_10: AAA-like doma 68.3 2.1 4.5E-05 47.8 0.8 19 174-192 1-19 (304)
431 PF08826 DMPK_coil: DMPK coile 68.1 40 0.00088 29.5 8.4 32 701-732 24-55 (61)
432 PF01695 IstB_IS21: IstB-like 67.9 3.3 7.2E-05 43.7 2.2 19 175-193 48-66 (178)
433 PF04710 Pellino: Pellino; In 67.8 1.7 3.7E-05 50.5 0.0 9 321-329 240-248 (416)
434 cd01129 PulE-GspE PulE/GspE Th 67.6 3.3 7.1E-05 46.6 2.2 27 166-192 72-98 (264)
435 PF06008 Laminin_I: Laminin Do 67.1 2.2E+02 0.0047 32.0 26.2 80 641-732 88-169 (264)
436 COG5008 PilU Tfp pilus assembl 67.1 4 8.7E-05 45.5 2.6 31 162-192 115-145 (375)
437 KOG1003 Actin filament-coating 66.8 1.9E+02 0.0041 31.2 20.6 31 702-732 4-34 (205)
438 PRK02119 hypothetical protein; 66.6 19 0.00042 32.6 6.4 53 717-783 3-55 (73)
439 PF14570 zf-RING_4: RING/Ubox 66.5 2.3 4.9E-05 35.3 0.4 38 1050-1088 1-47 (48)
440 PF07106 TBPIP: Tat binding pr 66.1 41 0.0009 35.1 9.9 31 702-732 79-109 (169)
441 KOG3476 Microtubule-associated 65.8 0.74 1.6E-05 42.1 -2.7 38 1048-1091 55-92 (100)
442 PF09755 DUF2046: Uncharacteri 65.4 2.6E+02 0.0057 32.3 29.4 26 888-913 231-256 (310)
443 KOG0288 WD40 repeat protein Ti 65.2 2E+02 0.0043 34.3 15.6 36 699-734 38-73 (459)
444 KOG4421 Uncharacterized conser 65.1 2.3E+02 0.0049 33.1 15.7 45 782-826 155-199 (637)
445 TIGR02977 phageshock_pspA phag 64.6 2.2E+02 0.0048 31.1 22.6 83 760-844 47-129 (219)
446 PF11221 Med21: Subunit 21 of 64.5 1.2E+02 0.0025 31.1 12.5 97 599-701 1-124 (144)
447 COG3074 Uncharacterized protei 64.5 98 0.0021 27.7 9.9 39 755-793 8-46 (79)
448 KOG0727 26S proteasome regulat 64.3 8.2 0.00018 42.7 4.2 74 142-215 152-247 (408)
449 PF07989 Microtub_assoc: Micro 64.2 51 0.0011 30.0 8.7 67 762-841 4-70 (75)
450 KOG4445 Uncharacterized conser 64.1 1.7 3.6E-05 48.6 -1.0 25 1049-1074 117-144 (368)
451 PF15290 Syntaphilin: Golgi-lo 64.0 1.1E+02 0.0024 34.5 12.7 26 707-732 80-105 (305)
452 PF14988 DUF4515: Domain of un 63.7 2.3E+02 0.0049 30.9 19.5 53 602-664 19-71 (206)
453 KOG1734 Predicted RING-contain 63.5 2.7 5.9E-05 46.3 0.5 44 1046-1090 223-282 (328)
454 TIGR02782 TrbB_P P-type conjug 63.4 3.6 7.9E-05 47.1 1.5 28 164-192 123-150 (299)
455 COG4717 Uncharacterized conser 62.9 4.6E+02 0.01 34.3 27.8 87 640-732 557-650 (984)
456 PRK11546 zraP zinc resistance 62.8 49 0.0011 33.9 9.2 73 598-701 44-116 (143)
457 KOG3850 Predicted membrane pro 62.7 3.2E+02 0.0069 32.3 29.5 48 764-824 323-370 (455)
458 PHA00729 NTP-binding motif con 62.7 5.6 0.00012 43.7 2.7 32 161-192 4-35 (226)
459 PLN02939 transferase, transfer 62.7 2.3E+02 0.005 37.7 17.3 24 709-732 156-179 (977)
460 PF09738 DUF2051: Double stran 62.6 2.9E+02 0.0064 31.9 17.8 23 767-789 221-243 (302)
461 cd07665 BAR_SNX1 The Bin/Amphi 62.6 2.5E+02 0.0055 31.2 16.5 56 603-664 45-100 (234)
462 PF05970 PIF1: PIF1-like helic 62.3 4.8 0.0001 47.3 2.3 37 151-191 3-39 (364)
463 KOG1899 LAR transmembrane tyro 62.2 4.1E+02 0.0088 33.4 19.1 57 676-732 106-162 (861)
464 KOG1924 RhoA GTPase effector D 62.1 30 0.00065 43.7 8.8 28 691-718 925-952 (1102)
465 PF02318 FYVE_2: FYVE-type zin 61.7 4.7 0.0001 39.7 1.8 66 1020-1086 27-102 (118)
466 KOG4362 Transcriptional regula 61.5 3.9 8.5E-05 51.0 1.4 41 1049-1090 23-70 (684)
467 PF04102 SlyX: SlyX; InterPro 61.3 21 0.00046 31.8 5.7 51 721-785 2-52 (69)
468 PF01637 Arch_ATPase: Archaeal 61.1 3.9 8.5E-05 43.6 1.2 28 165-192 11-38 (234)
469 PF00448 SRP54: SRP54-type pro 60.8 3.4 7.3E-05 44.4 0.6 17 176-192 3-19 (196)
470 PF03915 AIP3: Actin interacti 60.7 3.8E+02 0.0082 32.5 18.2 87 646-734 150-238 (424)
471 PHA02544 44 clamp loader, smal 60.3 6.1 0.00013 45.1 2.6 22 171-192 39-61 (316)
472 COG5219 Uncharacterized conser 60.3 3.8 8.3E-05 51.9 1.0 32 367-398 892-923 (1525)
473 PF03854 zf-P11: P-11 zinc fin 60.2 3.4 7.4E-05 33.9 0.4 43 1049-1093 4-50 (50)
474 KOG3799 Rab3 effector RIM1 and 59.9 8.7 0.00019 38.2 3.2 24 1043-1069 61-84 (169)
475 PF00004 AAA: ATPase family as 59.8 3.7 8E-05 39.8 0.7 15 177-191 1-15 (132)
476 TIGR02449 conserved hypothetic 59.8 65 0.0014 28.6 8.2 54 767-820 9-62 (65)
477 PRK13894 conjugal transfer ATP 59.7 4.8 0.0001 46.6 1.6 28 164-192 139-166 (319)
478 TIGR02449 conserved hypothetic 59.6 48 0.001 29.4 7.3 50 685-734 4-53 (65)
479 PRK12402 replication factor C 59.5 6.3 0.00014 45.2 2.6 43 142-192 12-54 (337)
480 PRK00106 hypothetical protein; 59.5 4.4E+02 0.0096 32.9 18.8 32 904-935 284-319 (535)
481 PF10367 Vps39_2: Vacuolar sor 59.5 9.8 0.00021 36.1 3.5 31 1045-1076 76-108 (109)
482 PRK15422 septal ring assembly 59.5 95 0.0021 28.6 9.3 37 808-844 33-69 (79)
483 COG1842 PspA Phage shock prote 59.3 2.8E+02 0.0061 30.6 15.7 122 784-951 11-136 (225)
484 PF13086 AAA_11: AAA domain; P 59.0 5.1 0.00011 42.6 1.7 26 166-192 10-35 (236)
485 PF05010 TACC: Transforming ac 58.9 2.7E+02 0.0059 30.4 23.6 35 804-838 158-192 (207)
486 KOG4421 Uncharacterized conser 58.7 2.7E+02 0.006 32.4 14.9 123 705-844 490-618 (637)
487 PRK04406 hypothetical protein; 58.6 36 0.00077 31.0 6.7 48 720-781 8-55 (75)
488 KOG1705 Uncharacterized conser 58.5 3.4 7.3E-05 38.3 0.1 33 1049-1086 29-63 (110)
489 PF15397 DUF4618: Domain of un 58.4 3.2E+02 0.0068 30.9 23.8 52 678-732 85-136 (258)
490 TIGR03752 conj_TIGR03752 integ 58.4 83 0.0018 38.2 11.5 68 766-833 67-135 (472)
491 PF05673 DUF815: Protein of un 58.3 4.1 8.9E-05 45.2 0.7 125 141-299 23-155 (249)
492 smart00053 DYNc Dynamin, GTPas 57.9 19 0.00041 40.0 5.9 53 263-330 85-137 (240)
493 PF13479 AAA_24: AAA domain 57.9 4.7 0.0001 43.6 1.2 20 174-193 3-22 (213)
494 COG1201 Lhr Lhr-like helicases 57.9 12 0.00026 48.3 4.8 53 165-228 30-83 (814)
495 KOG1923 Rac1 GTPase effector F 57.9 34 0.00073 43.3 8.4 33 705-737 669-701 (830)
496 PRK12704 phosphodiesterase; Pr 57.9 4.6E+02 0.01 32.6 20.2 49 689-737 97-145 (520)
497 PF13166 AAA_13: AAA domain 57.7 5.2E+02 0.011 33.2 21.8 188 601-812 284-471 (712)
498 PRK12723 flagellar biosynthesi 57.6 8.7 0.00019 45.7 3.4 19 174-192 174-192 (388)
499 PF06156 DUF972: Protein of un 57.4 46 0.001 32.4 7.7 55 773-841 2-56 (107)
500 PF13207 AAA_17: AAA domain; P 57.1 4.6 9.9E-05 38.9 0.8 15 176-190 1-15 (121)
No 1
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.8e-87 Score=809.00 Aligned_cols=398 Identities=36% Similarity=0.592 Sum_probs=340.9
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeEEEeeCC-CE-EEecCC--C--CCcceecceecCCCCChhHHHhhhhHHHHHHH
Q 001340 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADG-DK-IVRNEY--N--PATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1096)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~-~~-~~~~~~--~--~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~ 169 (1096)
...+.||+|+|||||++.+|.......++..+| .+ |.+... . -.+.|+||+||||.+.|.+||+.++.|+|..|
T Consensus 45 ~e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eV 124 (1041)
T KOG0243|consen 45 KEKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEV 124 (1041)
T ss_pred CCCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHH
Confidence 345679999999999999999888888888777 33 322221 1 35789999999999999999999999999999
Q ss_pred hcCCceeEEeeccCCCCcccccCC--------CCCCCCchHHHHHHHHHHhhcCCCCeeEEEEeeeeeecceeeecCCCC
Q 001340 170 MEGVNGTVFAYGVTSSGKTHTMHG--------DQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPT 241 (1096)
Q Consensus 170 l~G~N~tIfaYGqTgSGKT~Tm~G--------~~~~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~ 241 (1096)
+.|||||||||||||+||||||.| .+..+|||||++.+||+.+.... .+|.|+|||||+|||.|+|||+|.
T Consensus 125 l~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~-~EYsvKVSfLELYNEEl~DLLa~~ 203 (1041)
T KOG0243|consen 125 LEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG-AEYSVKVSFLELYNEELTDLLASE 203 (1041)
T ss_pred hccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC-CeEEEEEEehhhhhHHHHHhcCCc
Confidence 999999999999999999999999 56789999999999999998664 899999999999999999999975
Q ss_pred C---CcceEeeCC------CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCC-C
Q 001340 242 G---QNLRVREDA------QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-E 311 (1096)
Q Consensus 242 ~---~~l~ire~~------~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~-~ 311 (1096)
. ..+.+.+++ .|++|.||.+++|.++.|++.+|.+|...|++++|.||.+|||||+||+|+|....... +
T Consensus 204 ~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~g 283 (1041)
T KOG0243|consen 204 DTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEG 283 (1041)
T ss_pred cccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcc
Confidence 4 345555555 57999999999999999999999999999999999999999999999999998765433 2
Q ss_pred CCcEEEeEeEEEecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccce
Q 001340 312 YDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVS 390 (1096)
Q Consensus 312 ~~~~~~skL~lVDLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~ 390 (1096)
...++.|||+||||||||. ..+|+.+.|.+|++.||+||+|||+||.||.++. .|||||+|||||||||||||.+||+
T Consensus 284 eelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s-~HIPYRESKLTRLLQDSLGGkTKT~ 362 (1041)
T KOG0243|consen 284 EELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHS-GHIPYRESKLTRLLQDSLGGKTKTC 362 (1041)
T ss_pred hhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccC-CCCCchHHHHHHHHHHHhCCCceeE
Confidence 3557889999999999998 7789999999999999999999999999999964 5999999999999999999999999
Q ss_pred eEEeeCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHccccCCCCHHHHHHHHHH
Q 001340 391 LICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRGILVGVSHEELMTLRQK 470 (1096)
Q Consensus 391 ~I~~Isp~~~~~~ETlsTLrfa~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~~~~~~~~~~~~~e~~~l~~~ 470 (1096)
|||||||+..+++||++||.||.|||+|+|+|.+|..+..+.+++.|-.||.+||.+|...+.......+++.+......
T Consensus 363 iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e 442 (1041)
T KOG0243|consen 363 IIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKE 442 (1041)
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887665554555544321111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 471 LEEGQVKMQSRLEEEEEAKAALMSRIQRL 499 (1096)
Q Consensus 471 l~~~~~~~~~~l~~~~~~~~~l~~~~~~l 499 (1096)
...+..++++.+....++..++..+
T Consensus 443 ----~~~~~~~ieele~el~~~~~~l~~~ 467 (1041)
T KOG0243|consen 443 ----KKEMAEQIEELEEELENLEKQLKDL 467 (1041)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223333444444444454555444
No 2
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-91 Score=825.79 Aligned_cols=379 Identities=39% Similarity=0.584 Sum_probs=337.2
Q ss_pred CCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecC---CCCCcceecceecCCC-------CChhHHHhhhhHHHHHH
Q 001340 99 GDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNE---YNPATAYAFDRVFGPH-------ANSQEVYDVAARPVVKA 168 (1096)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~---~~~~~~f~FD~VF~~~-------~~q~~Vy~~~~~plV~~ 168 (1096)
..+|+|+||||||+.+|......+++.+.|+++.+.. .+....|+||++||.+ ++|..||+.++.+++++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 4679999999999999998888888888887543322 2234569999999876 58999999999999999
Q ss_pred HhcCCceeEEeeccCCCCcccccCCCC--CCCCchHHHHHHHHHHhhcC--CCCeeEEEEeeeeeecceeeecCC-CC-C
Q 001340 169 AMEGVNGTVFAYGVTSSGKTHTMHGDQ--NSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLD-PT-G 242 (1096)
Q Consensus 169 ~l~G~N~tIfaYGqTgSGKT~Tm~G~~--~~~GIipr~~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL~-~~-~ 242 (1096)
+|+|||+||||||||||||||||+|.+ +++|||||+|++||.+|... .+..|.|.|||||||||+|+|||+ |. +
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~k 162 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSK 162 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCC
Confidence 999999999999999999999999988 89999999999999999764 356899999999999999999999 54 5
Q ss_pred CcceEeeCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCC--CcEEEeE
Q 001340 243 QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEY--DGVIFSQ 319 (1096)
Q Consensus 243 ~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~--~~~~~sk 319 (1096)
.+|++||+| .|+||++|+.+.|+|+.|+..+|..|++.|++++|+||+.|||||+||+|.+.+..+.... +..++|+
T Consensus 163 g~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SK 242 (1221)
T KOG0245|consen 163 GGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSK 242 (1221)
T ss_pred CCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeee
Confidence 789999999 7999999999999999999999999999999999999999999999999999987654333 4678999
Q ss_pred eEEEecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhc------CCCCCcCCCCCccchhhccCCCCCccceeE
Q 001340 320 LNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSE------GKASHVPYRDSKLTRLLQSSLSGHGHVSLI 392 (1096)
Q Consensus 320 L~lVDLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~------~k~~hiPyRdSkLTrLLqdsLgGnskt~~I 392 (1096)
|+||||||||| +.+++.|.|+|||.+|||||+|||+||+||++ ++..+||||||.|||||+++|||||||+||
T Consensus 243 IsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMI 322 (1221)
T KOG0245|consen 243 ISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMI 322 (1221)
T ss_pred eeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhh
Confidence 99999999999 67999999999999999999999999999986 234599999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHccccC-------CCCHHHHH
Q 001340 393 CTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRGILV-------GVSHEELM 465 (1096)
Q Consensus 393 ~~Isp~~~~~~ETlsTLrfa~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~~~~~~~~-------~~~~~e~~ 465 (1096)
|+|||++.||+|||+|||||+|||+|+|+|++|+..+.+ +|++|+.||.+||..|.....+... .....++.
T Consensus 323 AAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaK-LIRELreEv~rLksll~~~~~~~~~~~~~p~~~~~~~~~e 401 (1221)
T KOG0245|consen 323 AALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAK-LIRELREEVARLKSLLRAQGLGDIAVEGSPSALLSQPEIE 401 (1221)
T ss_pred hccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHH-HHHHHHHHHHHHHHHHhccccccccccCCcccccccccHH
Confidence 999999999999999999999999999999999987765 8999999999999998765433221 13466788
Q ss_pred HHHHHHHHHHHHH
Q 001340 466 TLRQKLEEGQVKM 478 (1096)
Q Consensus 466 ~l~~~l~~~~~~~ 478 (1096)
+++++|++.+..|
T Consensus 402 ~~~~~L~E~Ek~m 414 (1221)
T KOG0245|consen 402 ELRERLQETEKIM 414 (1221)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887755433
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.1e-89 Score=795.20 Aligned_cols=354 Identities=43% Similarity=0.627 Sum_probs=319.1
Q ss_pred CCCEEEEEEeCCCChhhhhcCCeEEEeeCCC--EEEecC-----CCCCcceecceecCCCCChhHHHhhhhHHHHHHHhc
Q 001340 99 GDSISVTIRFRPLSEREFQRGDEIAWYADGD--KIVRNE-----YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAME 171 (1096)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~--~~~~~~-----~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~ 171 (1096)
..+|+|+||+||++..+...+....+..+.. .+.... ..+.+.|+||+||+++++|++||+.++.|+|++||+
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~ 83 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE 83 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence 5689999999999997765554433333322 222111 124567999999999999999999999999999999
Q ss_pred CCceeEEeeccCCCCcccccCCC-CCCCCchHHHHHHHHHHhhcCCC-CeeEEEEeeeeeecceeeecCCCCC-CcceEe
Q 001340 172 GVNGTVFAYGVTSSGKTHTMHGD-QNSPGIIPLAIKDVFSIIQDTPG-REFLLRVSYLEIYNEVINDLLDPTG-QNLRVR 248 (1096)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm~G~-~~~~GIipr~~~~LF~~i~~~~~-~~~~v~vS~lEIYnE~i~DLL~~~~-~~l~ir 248 (1096)
||||||||||||||||||||.|+ +...|||||++.+||.+|+...+ ..|.|+|||+|||||.|+|||+|.. +.+.|+
T Consensus 84 GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lr 163 (574)
T KOG4280|consen 84 GYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLELR 163 (574)
T ss_pred ccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCceee
Confidence 99999999999999999999999 66789999999999999998764 4699999999999999999999987 689999
Q ss_pred eCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecC-CCCCCcEEEeEeEEEecC
Q 001340 249 EDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDH-GDEYDGVIFSQLNLIDLA 326 (1096)
Q Consensus 249 e~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~-~~~~~~~~~skL~lVDLA 326 (1096)
+++ .|+||+||+++.|.++++++.+|..|..+|.+++|.||..|||||+||+|+|++... ..+......|+|+|||||
T Consensus 164 e~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLa 243 (574)
T KOG4280|consen 164 EDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLA 243 (574)
T ss_pred EcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeecc
Confidence 999 899999999999999999999999999999999999999999999999999999432 334456788999999999
Q ss_pred CCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHH
Q 001340 327 GSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEET 405 (1096)
Q Consensus 327 GSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ET 405 (1096)
|||| .++++.|.|++|+.+||+||++||+||.+|++++..||||||||||+||||||||||+|+|||||+|+..+++||
T Consensus 244 gsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ET 323 (574)
T KOG4280|consen 244 GSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEET 323 (574)
T ss_pred chhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHH
Confidence 9999 789999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHc
Q 001340 406 HNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKR 453 (1096)
Q Consensus 406 lsTLrfa~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~~~~ 453 (1096)
++|||||+|||.|+|+|.+|+..+ ++.+..|+.+|..|+.+|.....
T Consensus 324 lsTLrfA~Rak~I~nk~~ined~~-~~~~~~lq~ei~~Lk~~l~~~~~ 370 (574)
T KOG4280|consen 324 LSTLRFAQRAKAIKNKPVINEDPK-DALLRELQEEIERLKKELDPGGS 370 (574)
T ss_pred HHHHHHHHHHHHhhccccccCCcc-hhhHHHHHHHHHHHHHhhccccC
Confidence 999999999999999999999665 46899999999999999998643
No 4
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=1.3e-82 Score=773.65 Aligned_cols=356 Identities=37% Similarity=0.629 Sum_probs=317.1
Q ss_pred CCCCCCCCCCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHh
Q 001340 91 PLDAPQRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAM 170 (1096)
Q Consensus 91 ~~~~~~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l 170 (1096)
+.+.+....++|+|+|||||+++.| .+..+++..+++.+.+. .+.|.||+||+++++|++||+.++.|+|+++|
T Consensus 89 ~~~en~~~ds~VkV~VRVRPl~~~E--~g~~iV~~~s~dsl~I~----~qtFtFD~VFdp~aTQedVFe~vv~PLV~svL 162 (1320)
T PLN03188 89 TAPENGVSDSGVKVIVRMKPLNKGE--EGEMIVQKMSNDSLTIN----GQTFTFDSIADPESTQEDIFQLVGAPLVENCL 162 (1320)
T ss_pred ccccccCCCCCeEEEEEcCCCCCcc--CCCeeEEEcCCCeEEEe----CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHh
Confidence 3444455678999999999999886 35566666677776654 36799999999999999999999999999999
Q ss_pred cCCceeEEeeccCCCCcccccCCCC----------CCCCchHHHHHHHHHHhhcC------CCCeeEEEEeeeeeeccee
Q 001340 171 EGVNGTVFAYGVTSSGKTHTMHGDQ----------NSPGIIPLAIKDVFSIIQDT------PGREFLLRVSYLEIYNEVI 234 (1096)
Q Consensus 171 ~G~N~tIfaYGqTgSGKT~Tm~G~~----------~~~GIipr~~~~LF~~i~~~------~~~~~~v~vS~lEIYnE~i 234 (1096)
+|||+||||||||||||||||+|+. .++|||||++++||..|... ....|.|+|||||||||+|
T Consensus 163 dGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI 242 (1320)
T PLN03188 163 AGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQI 242 (1320)
T ss_pred cCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcc
Confidence 9999999999999999999999964 46899999999999999642 3457999999999999999
Q ss_pred eecCCCCCCcceEeeCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCC--CC
Q 001340 235 NDLLDPTGQNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHG--DE 311 (1096)
Q Consensus 235 ~DLL~~~~~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~--~~ 311 (1096)
||||+|....+.|++++ .|+||.||+++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|.|++.... ++
T Consensus 243 ~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg 322 (1320)
T PLN03188 243 TDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADG 322 (1320)
T ss_pred eeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCC
Confidence 99999998899999998 6899999999999999999999999999999999999999999999999999875432 23
Q ss_pred CCcEEEeEeEEEecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhc----CCCCCcCCCCCccchhhccCCCCC
Q 001340 312 YDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSE----GKASHVPYRDSKLTRLLQSSLSGH 386 (1096)
Q Consensus 312 ~~~~~~skL~lVDLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~----~k~~hiPyRdSkLTrLLqdsLgGn 386 (1096)
...+..|+|+||||||||| .++++.|.+++|+++||+||++||+||.+|+. ++..||||||||||+||||+||||
T Consensus 323 ~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGN 402 (1320)
T PLN03188 323 LSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGN 402 (1320)
T ss_pred CcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCC
Confidence 3456789999999999999 46889999999999999999999999999985 455799999999999999999999
Q ss_pred ccceeEEeeCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHcc
Q 001340 387 GHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRG 454 (1096)
Q Consensus 387 skt~~I~~Isp~~~~~~ETlsTLrfa~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~~~~~ 454 (1096)
|+|+|||||||+..+++||++||+||+|||+|+|+|.+|+.... .+..|++.|..|++||..++..
T Consensus 403 SKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~--~vn~LrelIr~Lk~EL~rLK~~ 468 (1320)
T PLN03188 403 AKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQD--DVNFLREVIRQLRDELQRVKAN 468 (1320)
T ss_pred ceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhh--hHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999986543 3566778888888888887764
No 5
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-86 Score=802.08 Aligned_cols=355 Identities=50% Similarity=0.795 Sum_probs=331.8
Q ss_pred CCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCCCC-------CcceecceecCCCCChhHHHhhhhHHHHHHHhc
Q 001340 99 GDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNP-------ATAYAFDRVFGPHANSQEVYDVAARPVVKAAME 171 (1096)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~-------~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~ 171 (1096)
...|.|+|||||+++++...++...|...++..++..... ...|.||+||+++++|++||+..++|+|++||.
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~ 84 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLE 84 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhc
Confidence 4589999999999999777788888887776654433322 278999999999999999999999999999999
Q ss_pred CCceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcCCCCeeEEEEeeeeeecceeeecCCCCCCcceEeeCC
Q 001340 172 GVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA 251 (1096)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~ire~~ 251 (1096)
||||||||||||||||||||+|...+|||||+++.|||+.|.+..++.|.|+|||+|||||.|+|||+|.++.|.|++|+
T Consensus 85 G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irED~ 164 (675)
T KOG0242|consen 85 GFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGGDLRLREDS 164 (675)
T ss_pred CcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCCCceEeEcC
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred C-CcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEEecCCCCC
Q 001340 252 Q-GTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES 330 (1096)
Q Consensus 252 ~-g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr 330 (1096)
. |++|.||+++.|.|+++++.+|..|+.+|+++.|.+|..|||||+||+|.|.+...... . ..++|+|||||||||
T Consensus 165 ~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~--~-~~s~L~lIDLAGSER 241 (675)
T KOG0242|consen 165 EGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS--S-RVSKLNLIDLAGSER 241 (675)
T ss_pred CCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc--c-hhheehhhhhhhhhh
Confidence 5 99999999999999999999999999999999999999999999999999999876544 2 678999999999998
Q ss_pred -cccccchhhhhhhHHHHhhHHHHHHHHHHhhcC-CCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHHHHH
Q 001340 331 -SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG-KASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNT 408 (1096)
Q Consensus 331 -~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~-k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ETlsT 408 (1096)
.++++.|.|++||++||+||++||+||.+|+++ ...||||||||||||||++|||||+|+|||||+|+..+|+||.+|
T Consensus 242 as~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nT 321 (675)
T KOG0242|consen 242 ASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNT 321 (675)
T ss_pred hhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHH
Confidence 679999999999999999999999999999998 466899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 001340 409 LKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRGIL 456 (1096)
Q Consensus 409 Lrfa~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~~~~~~~ 456 (1096)
|+||+|||.|++++.+|.+.....++..++++|..|+.++..++....
T Consensus 322 L~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~ 369 (675)
T KOG0242|consen 322 LKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKLE 369 (675)
T ss_pred HHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhccccc
Confidence 999999999999999999999999999889999999999999876653
No 6
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=6.4e-84 Score=732.63 Aligned_cols=343 Identities=43% Similarity=0.643 Sum_probs=314.8
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCeEEEee-C-CCEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCce
Q 001340 98 SGDSISVTIRFRPLSEREFQRGDEIAWYA-D-GDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNG 175 (1096)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~~~~~~~-~-~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~ 175 (1096)
.-++|+|+||+||.+..|...+...+..+ + ..++++...+....|.||+||.|+++|++||..++.|+|++||.||||
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNG 84 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNG 84 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhcccce
Confidence 35689999999999999987776554433 3 345555555555899999999999999999999999999999999999
Q ss_pred eEEeeccCCCCcccccCCCCC---CCCchHHHHHHHHHHhhcCCC-CeeEEEEeeeeeecceeeecCCCCCCcceEeeCC
Q 001340 176 TVFAYGVTSSGKTHTMHGDQN---SPGIIPLAIKDVFSIIQDTPG-REFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA 251 (1096)
Q Consensus 176 tIfaYGqTgSGKT~Tm~G~~~---~~GIipr~~~~LF~~i~~~~~-~~~~v~vS~lEIYnE~i~DLL~~~~~~l~ire~~ 251 (1096)
||||||||||||||||.|... ..|||||++++||++|...+. .+|.|+|||||||+|+|+|||+|.+.++.|++|.
T Consensus 85 TvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsvheDK 164 (607)
T KOG0240|consen 85 TVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSVHEDK 164 (607)
T ss_pred eEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCceeeccc
Confidence 999999999999999999766 569999999999999987654 5999999999999999999999999999999996
Q ss_pred -CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEEecCCCCC
Q 001340 252 -QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES 330 (1096)
Q Consensus 252 -~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr 330 (1096)
.++||+|+++..|.++++++.+|..|..+|+++.|+||.+|||||+||+|+|.+..... ..+..|+|+||||||||+
T Consensus 165 ~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~--~~~~~gkLyLVDLaGSEk 242 (607)
T KOG0240|consen 165 NRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED--KRKLSGKLYLVDLAGSEK 242 (607)
T ss_pred CCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccc--hhhccccEEEEEcccccc
Confidence 67899999999999999999999999999999999999999999999999999876533 457889999999999998
Q ss_pred -cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHHHHHH
Q 001340 331 -SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTL 409 (1096)
Q Consensus 331 -~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ETlsTL 409 (1096)
+|+++.|.-+.|+++||+||++||+||++|++|...|||||||||||||||+|||||+|.+|+|++|+..+..||.+||
T Consensus 243 vsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl 322 (607)
T KOG0240|consen 243 VSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTL 322 (607)
T ss_pred cCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccch
Confidence 7899999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccccccccCHHHHHHHHHHHHH
Q 001340 410 KFASRAKRVEIYASRNKIIDEKSLIKKYQREIS 442 (1096)
Q Consensus 410 rfa~rak~I~~~~~~n~~~~~~~~i~~~~~ei~ 442 (1096)
+|++|||.|+|.+.+|...+.+.+.++|..+-.
T Consensus 323 ~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~kd 355 (607)
T KOG0240|consen 323 RFGNRAKTIKNTVWVNLELTAEEWKRKLEKKKD 355 (607)
T ss_pred hhccccccccchhhhhhHhhHHHHHHHHHHHHh
Confidence 999999999999999999888888877766533
No 7
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-82 Score=733.85 Aligned_cols=352 Identities=40% Similarity=0.631 Sum_probs=323.5
Q ss_pred CCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCC---------CCCcceecceecCCC-------CChhHHHhhhh
Q 001340 99 GDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEY---------NPATAYAFDRVFGPH-------ANSQEVYDVAA 162 (1096)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~---------~~~~~f~FD~VF~~~-------~~q~~Vy~~~~ 162 (1096)
..+|+|+|||||++.+|+....++++.+++...+.+.. ++.++|.||++|++. +.|+.||+.++
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 56899999999999999999988888888775543322 456899999999875 57999999999
Q ss_pred HHHHHHHhcCCceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhc--CCCCeeEEEEeeeeeecceeeecCCC
Q 001340 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLDP 240 (1096)
Q Consensus 163 ~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~--~~~~~~~v~vS~lEIYnE~i~DLL~~ 240 (1096)
.-+|+++|+|||+||||||||||||||||+|..++||||||.|..||..|.. .+...|.|.|||+|||||++||||+|
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdP 162 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDP 162 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCC
Confidence 9999999999999999999999999999999999999999999999999975 45678999999999999999999998
Q ss_pred CC--CcceEeeCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeec--CCCCCCcE
Q 001340 241 TG--QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSD--HGDEYDGV 315 (1096)
Q Consensus 241 ~~--~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~--~~~~~~~~ 315 (1096)
.+ +.|+++++. .|.||.||++..|.|++|+-.+|..|+++|+++.|+||..|||||+||.|.|.+.- ...+..+-
T Consensus 163 k~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~Sge 242 (1714)
T KOG0241|consen 163 KGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGE 242 (1714)
T ss_pred CCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchh
Confidence 75 679999998 89999999999999999999999999999999999999999999999999998863 33444566
Q ss_pred EEeEeEEEecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhc-----CCCCCcCCCCCccchhhccCCCCCccc
Q 001340 316 IFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSE-----GKASHVPYRDSKLTRLLQSSLSGHGHV 389 (1096)
Q Consensus 316 ~~skL~lVDLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~-----~k~~hiPyRdSkLTrLLqdsLgGnskt 389 (1096)
+.|+|.||||||||| .++++.|.|++||++||+||++||.||++|++ |+.++||||||.|||||||+|||||+|
T Consensus 243 KvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrT 322 (1714)
T KOG0241|consen 243 KVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRT 322 (1714)
T ss_pred heeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCcee
Confidence 789999999999999 78999999999999999999999999999987 345699999999999999999999999
Q ss_pred eeEEeeCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHH
Q 001340 390 SLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQL 451 (1096)
Q Consensus 390 ~~I~~Isp~~~~~~ETlsTLrfa~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~~ 451 (1096)
+||+||||++.+|+|||+|||||.|||+|+|++.+|+..+. ..|++++.|+..|+.+|.+.
T Consensus 323 vMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpna-rvirElReEve~lr~qL~~a 383 (1714)
T KOG0241|consen 323 VMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNA-RVIRELREEVEKLREQLEQA 383 (1714)
T ss_pred EEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchH-HHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999986554 47899999999999999873
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.8e-79 Score=700.12 Aligned_cols=318 Identities=44% Similarity=0.675 Sum_probs=287.1
Q ss_pred CCEEEEEEeCCCChhhhhcCCeEEEe-eCCCEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEE
Q 001340 100 DSISVTIRFRPLSEREFQRGDEIAWY-ADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVF 178 (1096)
Q Consensus 100 ~~I~V~vRvRP~~~~E~~~~~~~~~~-~~~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIf 178 (1096)
++|+|+|||||+.+.|...+...++. .++..++.. ..+.+.|.||+||+++++|++||+.++.|+|+++|+|||+|||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~-~~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~ 79 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWH-SHPPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIF 79 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEee-CCCCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEE
Confidence 47999999999999987655544443 334444433 2346889999999999999999999999999999999999999
Q ss_pred eeccCCCCcccccCCCCC--------CCCchHHHHHHHHHHhhcC-----CCCeeEEEEeeeeeecceeeecCCCCCCcc
Q 001340 179 AYGVTSSGKTHTMHGDQN--------SPGIIPLAIKDVFSIIQDT-----PGREFLLRVSYLEIYNEVINDLLDPTGQNL 245 (1096)
Q Consensus 179 aYGqTgSGKT~Tm~G~~~--------~~GIipr~~~~LF~~i~~~-----~~~~~~v~vS~lEIYnE~i~DLL~~~~~~l 245 (1096)
|||||||||||||+|+.. ++|||||++++||..+... .+..|.|+|||+|||||+|||||++....+
T Consensus 80 aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~l 159 (337)
T cd01373 80 AYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRNL 159 (337)
T ss_pred EeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCCCc
Confidence 999999999999999763 6899999999999998643 346899999999999999999999988899
Q ss_pred eEeeCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEEe
Q 001340 246 RVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLID 324 (1096)
Q Consensus 246 ~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVD 324 (1096)
.|++++ .|++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|.+............|+|+|||
T Consensus 160 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VD 239 (337)
T cd01373 160 KIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLVD 239 (337)
T ss_pred eEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEEEEEEEE
Confidence 999998 6899999999999999999999999999999999999999999999999999987655544456789999999
Q ss_pred cCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhc---CCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCC
Q 001340 325 LAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSE---GKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASS 400 (1096)
Q Consensus 325 LAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~---~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~ 400 (1096)
|||||| .++++.|.+++|+.+||+||++|++||.+|++ ++..||||||||||+||+|+|||||+|+|||||+|+..
T Consensus 240 LAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~~ 319 (337)
T cd01373 240 LAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSK 319 (337)
T ss_pred CCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCcc
Confidence 999999 55778999999999999999999999999975 34679999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccc
Q 001340 401 SMEETHNTLKFASRAKRV 418 (1096)
Q Consensus 401 ~~~ETlsTLrfa~rak~I 418 (1096)
+++||++||+||+|||+|
T Consensus 320 ~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 320 CFGETLSTLKFAQRAKLI 337 (337)
T ss_pred cHHHHHHHHHHHHHhhcC
Confidence 999999999999999987
No 9
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.7e-78 Score=692.37 Aligned_cols=318 Identities=44% Similarity=0.713 Sum_probs=291.2
Q ss_pred CEEEEEEeCCCChhhhhcCCeEEEee-CCCEEEecCC-------------CCCcceecceecCCCCChhHHHhhhhHHHH
Q 001340 101 SISVTIRFRPLSEREFQRGDEIAWYA-DGDKIVRNEY-------------NPATAYAFDRVFGPHANSQEVYDVAARPVV 166 (1096)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~-~~~~~~~~~~-------------~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV 166 (1096)
+|+|+|||||+.+.|...+...+|.. ++..++.... ...+.|.||+||+++++|++||+.++.|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 59999999999999987777666654 3444443221 135689999999999999999999999999
Q ss_pred HHHhcCCceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcCC-CCeeEEEEeeeeeecceeeecCCCCCCcc
Q 001340 167 KAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNEVINDLLDPTGQNL 245 (1096)
Q Consensus 167 ~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~-~~~~~v~vS~lEIYnE~i~DLL~~~~~~l 245 (1096)
+++++|||+||||||||||||||||+|+..++|||||++++||+.++..+ +..|.|+|||+|||||+|+|||++....+
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l 160 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPL 160 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCCc
Confidence 99999999999999999999999999999999999999999999998765 67999999999999999999999988899
Q ss_pred eEeeCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCC-CCCcEEEeEeEEE
Q 001340 246 RVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-EYDGVIFSQLNLI 323 (1096)
Q Consensus 246 ~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~-~~~~~~~skL~lV 323 (1096)
.|++++ .|++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|.+...+. .......|+|+||
T Consensus 161 ~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~V 240 (338)
T cd01370 161 ELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLI 240 (338)
T ss_pred eEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEE
Confidence 999999 67899999999999999999999999999999999999999999999999999887542 1345778999999
Q ss_pred ecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCC--CCCcCCCCCccchhhccCCCCCccceeEEeeCCCCC
Q 001340 324 DLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGK--ASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASS 400 (1096)
Q Consensus 324 DLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k--~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~ 400 (1096)
||||||| .+++..|.+++|+.+||+||++|++||.+|+.++ ..||||||||||+||+|+|||||+|+|||||||+..
T Consensus 241 DLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~ 320 (338)
T cd01370 241 DLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSS 320 (338)
T ss_pred ECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchh
Confidence 9999999 5678899999999999999999999999999876 379999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccc
Q 001340 401 SMEETHNTLKFASRAKRV 418 (1096)
Q Consensus 401 ~~~ETlsTLrfa~rak~I 418 (1096)
+++||++||+||+|||+|
T Consensus 321 ~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 321 HYEETHNTLKYANRAKNI 338 (338)
T ss_pred hHHHHHHHHHHHHHhccC
Confidence 999999999999999987
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=2.5e-76 Score=676.07 Aligned_cols=312 Identities=40% Similarity=0.636 Sum_probs=281.5
Q ss_pred CCEEEEEEeCCCChhhhhcCCeEEE-eeCCCEEEecC-------------CCCCcceecceecCCCCChhHHHhhhhHHH
Q 001340 100 DSISVTIRFRPLSEREFQRGDEIAW-YADGDKIVRNE-------------YNPATAYAFDRVFGPHANSQEVYDVAARPV 165 (1096)
Q Consensus 100 ~~I~V~vRvRP~~~~E~~~~~~~~~-~~~~~~~~~~~-------------~~~~~~f~FD~VF~~~~~q~~Vy~~~~~pl 165 (1096)
++|+|+|||||+.+.|...+...+| ..++.++.... ....+.|.||+||+++++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 4799999999999998766554444 34455554332 123568999999999999999999999999
Q ss_pred HHHHhcCCceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcCCCCeeEEEEeeeeeecceeeecCCCCC---
Q 001340 166 VKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG--- 242 (1096)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~~--- 242 (1096)
|+++++|||+||||||||||||||||+|++.++|||||++++||+.+.. |.|+|||+|||||+|||||++..
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~-----~~v~~S~~EIyne~v~DLL~~~~~~~ 155 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG-----YSVFVSYVEIYNNYIYDLLEDSPSST 155 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh-----eeEEEEEEEEeCCEeEeCCCCccccc
Confidence 9999999999999999999999999999999999999999999999975 99999999999999999998754
Q ss_pred ---CcceEeeCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCC------CC
Q 001340 243 ---QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD------EY 312 (1096)
Q Consensus 243 ---~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~------~~ 312 (1096)
..+.|++++ .|++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|.|.+..... ..
T Consensus 156 ~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~ 235 (345)
T cd01368 156 KKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDK 235 (345)
T ss_pred cCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCC
Confidence 369999998 57899999999999999999999999999999999999999999999999998865432 12
Q ss_pred CcEEEeEeEEEecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcC-----CCCCcCCCCCccchhhccCCCCC
Q 001340 313 DGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG-----KASHVPYRDSKLTRLLQSSLSGH 386 (1096)
Q Consensus 313 ~~~~~skL~lVDLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~-----k~~hiPyRdSkLTrLLqdsLgGn 386 (1096)
.....|+|+||||||||+ .++++.|.+++|+.+||+||++|++||.+|++. +..||||||||||+||+|+||||
T Consensus 236 ~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~ 315 (345)
T cd01368 236 DQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGE 315 (345)
T ss_pred CceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCC
Confidence 456789999999999999 567899999999999999999999999999873 46799999999999999999999
Q ss_pred ccceeEEeeCCCCCCHHHHHHHHHHHHHhc
Q 001340 387 GHVSLICTVTPASSSMEETHNTLKFASRAK 416 (1096)
Q Consensus 387 skt~~I~~Isp~~~~~~ETlsTLrfa~rak 416 (1096)
|+|+||+||+|+..+++||++||+||.+|+
T Consensus 316 s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 316 GKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=5.8e-76 Score=676.55 Aligned_cols=326 Identities=39% Similarity=0.606 Sum_probs=298.8
Q ss_pred CCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCC-------CCCcceecceecCCC-------CChhHHHhhhhHHH
Q 001340 100 DSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEY-------NPATAYAFDRVFGPH-------ANSQEVYDVAARPV 165 (1096)
Q Consensus 100 ~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~-------~~~~~f~FD~VF~~~-------~~q~~Vy~~~~~pl 165 (1096)
++|+|+||+||++..|...+...++..++..+.+... .....|.||+||+++ ++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 5899999999999999888887777777766554432 245689999999999 99999999999999
Q ss_pred HHHHhcCCceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcCC--CCeeEEEEeeeeeecceeeecCCCCC-
Q 001340 166 VKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP--GREFLLRVSYLEIYNEVINDLLDPTG- 242 (1096)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~--~~~~~v~vS~lEIYnE~i~DLL~~~~- 242 (1096)
|+++++|||+||||||||||||||||+|+..++|||||++++||+.+.... +..|.|+|||+|||||+|||||++..
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~ 160 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKK 160 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCcc
Confidence 999999999999999999999999999999999999999999999998654 46899999999999999999999874
Q ss_pred --CcceEeeCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCC--CCCcEEE
Q 001340 243 --QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD--EYDGVIF 317 (1096)
Q Consensus 243 --~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~--~~~~~~~ 317 (1096)
..+.|++++ .|++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|.|.+..... .......
T Consensus 161 ~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~ 240 (356)
T cd01365 161 NKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKV 240 (356)
T ss_pred CCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEE
Confidence 689999998 68999999999999999999999999999999999999999999999999999876543 2345678
Q ss_pred eEeEEEecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcC-------CCCCcCCCCCccchhhccCCCCCccc
Q 001340 318 SQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG-------KASHVPYRDSKLTRLLQSSLSGHGHV 389 (1096)
Q Consensus 318 skL~lVDLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~-------k~~hiPyRdSkLTrLLqdsLgGnskt 389 (1096)
|+|+||||||||+ .+++..|.+++|+.+||+||++|++||.+|+.+ +..||||||||||+||+|+||||++|
T Consensus 241 s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t 320 (356)
T cd01365 241 SKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKT 320 (356)
T ss_pred EEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceE
Confidence 9999999999999 557788999999999999999999999999864 35799999999999999999999999
Q ss_pred eeEEeeCCCCCCHHHHHHHHHHHHHhcccccccccc
Q 001340 390 SLICTVTPASSSMEETHNTLKFASRAKRVEIYASRN 425 (1096)
Q Consensus 390 ~~I~~Isp~~~~~~ETlsTLrfa~rak~I~~~~~~n 425 (1096)
+||+||+|...+++||++||+||+||++|++.|++|
T Consensus 321 ~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 321 AMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 999999999999999999999999999999999875
No 12
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=2.4e-74 Score=657.56 Aligned_cols=319 Identities=42% Similarity=0.694 Sum_probs=291.6
Q ss_pred CCEEEEEEeCCCChhhhhcCCeEEEee--CCCEEEecCC-----CCCcceecceecCCCCChhHHHhhhhHHHHHHHhcC
Q 001340 100 DSISVTIRFRPLSEREFQRGDEIAWYA--DGDKIVRNEY-----NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEG 172 (1096)
Q Consensus 100 ~~I~V~vRvRP~~~~E~~~~~~~~~~~--~~~~~~~~~~-----~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G 172 (1096)
++|+|+|||||+++.|...+...++.. +...+.+... ...+.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 489999999999999987776555543 3334443322 345789999999999999999999999999999999
Q ss_pred CceeEEeeccCCCCcccccCCCCC---CCCchHHHHHHHHHHhhcCCCCeeEEEEeeeeeecceeeecCCCCC-CcceEe
Q 001340 173 VNGTVFAYGVTSSGKTHTMHGDQN---SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG-QNLRVR 248 (1096)
Q Consensus 173 ~N~tIfaYGqTgSGKT~Tm~G~~~---~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~~-~~l~ir 248 (1096)
||+||||||||||||||||+|+.. .+|||||++++||+.+...++..|.|+|||+|||||+|+|||++.. ..+.++
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~ 160 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELK 160 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEE
Confidence 999999999999999999999887 8999999999999999988788999999999999999999999875 689999
Q ss_pred eCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCC-CCCcEEEeEeEEEecC
Q 001340 249 EDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-EYDGVIFSQLNLIDLA 326 (1096)
Q Consensus 249 e~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~-~~~~~~~skL~lVDLA 326 (1096)
+++ .|++|.|++++.|.|++++..+|..|.++|.++.|.+|..|||||+||+|+|+..+.+. +...+..|+|+|||||
T Consensus 161 ~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLA 240 (333)
T cd01371 161 ERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLA 240 (333)
T ss_pred EcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECC
Confidence 998 48899999999999999999999999999999999999999999999999999876543 3345678999999999
Q ss_pred CCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHH
Q 001340 327 GSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEET 405 (1096)
Q Consensus 327 GSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ET 405 (1096)
|||+ .+++..|.+++|+..||+||.+|++||.+|+.++..||||||||||+||+|+|||||+|+||+||+|...+++||
T Consensus 241 GsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eT 320 (333)
T cd01371 241 GSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDET 320 (333)
T ss_pred CCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHH
Confidence 9998 567788999999999999999999999999998878999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 001340 406 HNTLKFASRAKRV 418 (1096)
Q Consensus 406 lsTLrfa~rak~I 418 (1096)
++||+||+|||+|
T Consensus 321 l~TL~fa~r~r~I 333 (333)
T cd01371 321 LSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999987
No 13
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=2.3e-74 Score=654.98 Aligned_cols=317 Identities=62% Similarity=0.974 Sum_probs=293.7
Q ss_pred CEEEEEEeCCCChhhhhcCCeEEEeeCCC-EEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEe
Q 001340 101 SISVTIRFRPLSEREFQRGDEIAWYADGD-KIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFA 179 (1096)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~~-~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfa 179 (1096)
+|+|+||+||+...|.. +...+|..+++ +++..+....+.|.||+||+++++|++||+.++.|+|+.+++|||+||||
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~~~v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~a 79 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDNDNTISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFA 79 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECCCCEEEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEe
Confidence 69999999999998873 44566665555 67666666788999999999999999999999999999999999999999
Q ss_pred eccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcCCCCeeEEEEeeeeeecceeeecCCCCCCcceEeeCCC-CcEeeC
Q 001340 180 YGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQ-GTYVEG 258 (1096)
Q Consensus 180 YGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~ire~~~-g~~v~g 258 (1096)
||||||||||||+|+..++|||||++++||..+...++..|.|+|||+|||||+|||||+|....+++++++. |++|.|
T Consensus 80 yG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~~~v~g 159 (321)
T cd01374 80 YGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVAG 159 (321)
T ss_pred ecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCCEEeCC
Confidence 9999999999999999999999999999999999888889999999999999999999999988999999985 899999
Q ss_pred ceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCC-CCCcEEEeEeEEEecCCCCCcccccch
Q 001340 259 IKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-EYDGVIFSQLNLIDLAGSESSKTETTG 337 (1096)
Q Consensus 259 l~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~-~~~~~~~skL~lVDLAGSEr~~t~~~g 337 (1096)
++++.|.|+++++.+|..|.++|++++|.+|.+|||||+||+|+|.+...+. .......|+|+||||||||+......|
T Consensus 160 l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~~~~~ 239 (321)
T cd01374 160 LTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQTGAG 239 (321)
T ss_pred ceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCccccCCCC
Confidence 9999999999999999999999999999999999999999999999877554 235677899999999999995433389
Q ss_pred hhhhhhHHHHhhHHHHHHHHHHhhcCC-CCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHHHHHHHHHHHhc
Q 001340 338 LRRKEGSYINKSLLTLGTVIGKLSEGK-ASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAK 416 (1096)
Q Consensus 338 ~r~~E~~~INkSL~aLg~vI~aL~~~k-~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ETlsTLrfa~rak 416 (1096)
.+++|+.+||+||.+|++||.+|+.++ ..||||||||||+||+|+|||||+|+|||||+|...+++||++||+||+||+
T Consensus 240 ~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~ 319 (321)
T cd01374 240 ERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAK 319 (321)
T ss_pred ccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHh
Confidence 999999999999999999999999976 6799999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 001340 417 RV 418 (1096)
Q Consensus 417 ~I 418 (1096)
+|
T Consensus 320 ~i 321 (321)
T cd01374 320 KV 321 (321)
T ss_pred cC
Confidence 86
No 14
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.4e-74 Score=656.28 Aligned_cols=309 Identities=37% Similarity=0.597 Sum_probs=281.4
Q ss_pred CCEEEEEEeCCCChhhhhcCCeEEEeeCCC-EEEecCC---------CCCcceecceecCCCCChhHHHhhhhHHHHHHH
Q 001340 100 DSISVTIRFRPLSEREFQRGDEIAWYADGD-KIVRNEY---------NPATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1096)
Q Consensus 100 ~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~-~~~~~~~---------~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~ 169 (1096)
++|+|+|||||+.+.|...+...++..+++ ++.+... .....|.||+||+++++|++||+.++.|+|+.+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 479999999999999987666666555554 4443311 125689999999999999999999999999999
Q ss_pred hcCCceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcCCCCeeEEEEeeeeeecceeeecCCCCCCcceEee
Q 001340 170 MEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVRE 249 (1096)
Q Consensus 170 l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~ire 249 (1096)
++|||+||||||||||||||||+|+..++|||||++++||+.++..+ ..|.|+|||+|||||.|+|||++ ...+.|++
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~-~~~l~i~~ 158 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN-DDLGVTVSFFEIYGGKLFDLLND-RKRLSVLE 158 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc-cccEEEEEEEeeecCchhhhccC-ccceeEEE
Confidence 99999999999999999999999999999999999999999998765 68999999999999999999998 56799999
Q ss_pred CC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEEecCCC
Q 001340 250 DA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGS 328 (1096)
Q Consensus 250 ~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGS 328 (1096)
++ .|++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|..... ....|+|+|||||||
T Consensus 159 ~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~-----~~~~s~l~~vDLAGs 233 (322)
T cd01367 159 DGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL-----NKLLGKLSFIDLAGS 233 (322)
T ss_pred cCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC-----CeeEEEEEEeecCCc
Confidence 98 568999999999999999999999999999999999999999999999999998654 356799999999999
Q ss_pred CCcc--cccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHHH
Q 001340 329 ESSK--TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETH 406 (1096)
Q Consensus 329 Er~~--t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ETl 406 (1096)
|+.. ....|.+++|+.+||+||++|++||.+|+.++ .||||||||||+||+|+|||||+|+|||||+|+..+++||+
T Consensus 234 E~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~-~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl 312 (322)
T cd01367 234 ERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK-AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTL 312 (322)
T ss_pred cccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHH
Confidence 9843 34578999999999999999999999999876 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 001340 407 NTLKFASRAK 416 (1096)
Q Consensus 407 sTLrfa~rak 416 (1096)
+||+||+|+|
T Consensus 313 ~tL~fa~r~k 322 (322)
T cd01367 313 NTLRYADRVK 322 (322)
T ss_pred HHHHHHHhhC
Confidence 9999999986
No 15
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=6.3e-74 Score=659.20 Aligned_cols=325 Identities=39% Similarity=0.639 Sum_probs=293.5
Q ss_pred CCEEEEEEeCCCChhhhhcCCeEEEeeCC--CEEEecCC----CCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCC
Q 001340 100 DSISVTIRFRPLSEREFQRGDEIAWYADG--DKIVRNEY----NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGV 173 (1096)
Q Consensus 100 ~~I~V~vRvRP~~~~E~~~~~~~~~~~~~--~~~~~~~~----~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~ 173 (1096)
.+|+|+|||||+.+.|...+...++..++ ..+..... ...+.|.||+||+++++|++||+.++.|+|+++++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGY 81 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 58999999999999997776665555443 44444322 2467899999999999999999999999999999999
Q ss_pred ceeEEeeccCCCCcccccCCCCC-----------CCCchHHHHHHHHHHhhcCCCCeeEEEEeeeeeecceeeecCCCC-
Q 001340 174 NGTVFAYGVTSSGKTHTMHGDQN-----------SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPT- 241 (1096)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~G~~~-----------~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~- 241 (1096)
|+||||||||||||||||+|+.. .+|||||++.+||+.+... +..|.|+|||+|||||+|+|||++.
T Consensus 82 n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~~ 160 (352)
T cd01364 82 NCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ-NTEYSVKVSYLELYNEELFDLLSSES 160 (352)
T ss_pred eEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc-cceeEEEEEEEEeeCCeeeeCCCCcc
Confidence 99999999999999999999843 4899999999999999866 6789999999999999999999986
Q ss_pred --CCcceEeeC---CCCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCC-CCCcE
Q 001340 242 --GQNLRVRED---AQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-EYDGV 315 (1096)
Q Consensus 242 --~~~l~ire~---~~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~-~~~~~ 315 (1096)
..+++++++ ..|++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|.+..... +....
T Consensus 161 ~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~ 240 (352)
T cd01364 161 DLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELV 240 (352)
T ss_pred ccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCccE
Confidence 578999999 368999999999999999999999999999999999999999999999999999876432 22445
Q ss_pred EEeEeEEEecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEe
Q 001340 316 IFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICT 394 (1096)
Q Consensus 316 ~~skL~lVDLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~ 394 (1096)
..|+|+||||||||+ .+.++.+.+.+|+..||+||.+|++||.+|+.+. .|||||+||||+||+|+|||||+|+||+|
T Consensus 241 ~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~-~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~ 319 (352)
T cd01364 241 KIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS-PHIPYRESKLTRLLQDSLGGRTKTSIIAT 319 (352)
T ss_pred EEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-CCCCCcccHHHHHHHHhcCCCceEEEEEE
Confidence 689999999999998 5677888999999999999999999999999865 69999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhccccccccccc
Q 001340 395 VTPASSSMEETHNTLKFASRAKRVEIYASRNK 426 (1096)
Q Consensus 395 Isp~~~~~~ETlsTLrfa~rak~I~~~~~~n~ 426 (1096)
|+|+..+++||++||+||+||++|+|.|.+|.
T Consensus 320 vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 320 ISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred eCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 99999999999999999999999999999885
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.8e-73 Score=648.71 Aligned_cols=317 Identities=44% Similarity=0.694 Sum_probs=292.2
Q ss_pred CCEEEEEEeCCCChhhhhcCCeEEEe-eCCCEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEE
Q 001340 100 DSISVTIRFRPLSEREFQRGDEIAWY-ADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVF 178 (1096)
Q Consensus 100 ~~I~V~vRvRP~~~~E~~~~~~~~~~-~~~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIf 178 (1096)
++|+|+|||||+.+.|...+...++. .++.++.+......+.|.||+||+++++|++||+.++.|+|+.+++|||+|||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ 81 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIF 81 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEE
Confidence 58999999999999987666555444 44446666655667899999999999999999999999999999999999999
Q ss_pred eeccCCCCcccccCCCCC---CCCchHHHHHHHHHHhhcCC-CCeeEEEEeeeeeecceeeecCCCCCCcceEeeCC-CC
Q 001340 179 AYGVTSSGKTHTMHGDQN---SPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA-QG 253 (1096)
Q Consensus 179 aYGqTgSGKT~Tm~G~~~---~~GIipr~~~~LF~~i~~~~-~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~ire~~-~g 253 (1096)
|||+|||||||||+|+.. ++|||||++++||+.+.... +..|.|+|||+|||||.|+|||++....+.+++++ .|
T Consensus 82 ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~ 161 (325)
T cd01369 82 AYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDKNRG 161 (325)
T ss_pred EeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEEEcCCCC
Confidence 999999999999999988 89999999999999997654 45899999999999999999999988899999998 68
Q ss_pred cEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEEecCCCCC-cc
Q 001340 254 TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-SK 332 (1096)
Q Consensus 254 ~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr-~~ 332 (1096)
++|.|++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|.|.+..... .....|+|+||||||||+ .+
T Consensus 162 ~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~--~~~~~s~l~~VDLAGsE~~~~ 239 (325)
T cd01369 162 VYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVET--GSKKRGKLFLVDLAGSEKVSK 239 (325)
T ss_pred EEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCC--CCEEEEEEEEEECCCCCcccc
Confidence 999999999999999999999999999999999999999999999999998876433 345789999999999998 56
Q ss_pred cccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHHHHHHHHH
Q 001340 333 TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFA 412 (1096)
Q Consensus 333 t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ETlsTLrfa 412 (1096)
++..|.+++|+..||+||++|++||.+|+.++..||||||||||+||+|+|||||+|+||+||+|+..+++||++||+||
T Consensus 240 ~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a 319 (325)
T cd01369 240 TGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFG 319 (325)
T ss_pred cCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHH
Confidence 78899999999999999999999999999988789999999999999999999999999999999999999999999999
Q ss_pred HHhccc
Q 001340 413 SRAKRV 418 (1096)
Q Consensus 413 ~rak~I 418 (1096)
+|||+|
T Consensus 320 ~r~~~i 325 (325)
T cd01369 320 ARAKTI 325 (325)
T ss_pred HHhhcC
Confidence 999986
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=5e-73 Score=643.07 Aligned_cols=309 Identities=35% Similarity=0.572 Sum_probs=279.5
Q ss_pred CEEEEEEeCCCChhhhhcCCeEEEeeCC-----CEEEecCC---CCCcceecceecCCCCChhHHHhhhhHHHHHHHhcC
Q 001340 101 SISVTIRFRPLSEREFQRGDEIAWYADG-----DKIVRNEY---NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEG 172 (1096)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~-----~~~~~~~~---~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G 172 (1096)
+|+|+|||||+.+.|.... .++...++ ..+..... ...+.|.||+||+++++|++||+.++.|+|+.+++|
T Consensus 1 ~i~V~vRvRP~~~~e~~~~-~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G 79 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSS-SCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSG 79 (319)
T ss_pred CcEEEEEeCcCCccccCCC-ceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCC
Confidence 6999999999999884332 23323233 24433322 245789999999999999999999999999999999
Q ss_pred CceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcCCCCeeEEEEeeeeeecceeeecCCCCCCcceEeeCC-
Q 001340 173 VNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA- 251 (1096)
Q Consensus 173 ~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~ire~~- 251 (1096)
||+||||||||||||||||+|+..++|||||++++||+.++... ..|.|+|||+|||||.|+|||++....+.|++++
T Consensus 80 ~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~ 158 (319)
T cd01376 80 QNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQA-WTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKD 158 (319)
T ss_pred CceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhcc-ccceEEEEEEEEECCEeeEccCCCCCCceEEEcCC
Confidence 99999999999999999999999999999999999999887653 6799999999999999999999988899999997
Q ss_pred CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEEecCCCCC-
Q 001340 252 QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES- 330 (1096)
Q Consensus 252 ~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr- 330 (1096)
.|++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|.|.+...+ ....|+|+||||||||+
T Consensus 159 ~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~----~~~~s~l~~VDLAGsE~~ 234 (319)
T cd01376 159 GNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN----IQLEGKLNLIDLAGSEDN 234 (319)
T ss_pred CCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC----ceEEEEEEEEECCCCCcc
Confidence 5679999999999999999999999999999999999999999999999999887542 35789999999999998
Q ss_pred cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHHHHHHH
Q 001340 331 SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLK 410 (1096)
Q Consensus 331 ~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ETlsTLr 410 (1096)
.+++..|.+++|+..||+||++|++||.+|+.+. .|||||||+||+||+|+|||||+|+|||||+|...+++||++||+
T Consensus 235 ~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~ 313 (319)
T cd01376 235 RRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-PRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLN 313 (319)
T ss_pred cccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHH
Confidence 4678899999999999999999999999999865 699999999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 001340 411 FASRAK 416 (1096)
Q Consensus 411 fa~rak 416 (1096)
||+|||
T Consensus 314 fa~r~~ 319 (319)
T cd01376 314 FASRSK 319 (319)
T ss_pred HHHhhC
Confidence 999996
No 18
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1.2e-72 Score=643.57 Aligned_cols=312 Identities=41% Similarity=0.625 Sum_probs=282.4
Q ss_pred CEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEe-----------cCCCCCcceecceecCCCCChhHHHhhhhHHHHHHH
Q 001340 101 SISVTIRFRPLSEREFQRGDEIAWYADGDKIVR-----------NEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1096)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~-----------~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~ 169 (1096)
+|+|+||+||+...+. ..+.+..++..+.. +.......|.||+||++ ++|++||+.++.|+|+++
T Consensus 1 ~i~V~vRvRP~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~ 76 (334)
T cd01375 1 TIQVFVRVRPTPTKQG---SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSA 76 (334)
T ss_pred CeEEEEECCCCCCCCC---ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHH
Confidence 5899999999987432 23444455444322 12234567999999999 999999999999999999
Q ss_pred hcCCceeEEeeccCCCCcccccCCCC---CCCCchHHHHHHHHHHhhcCCCCeeEEEEeeeeeecceeeecCCCCC----
Q 001340 170 MEGVNGTVFAYGVTSSGKTHTMHGDQ---NSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG---- 242 (1096)
Q Consensus 170 l~G~N~tIfaYGqTgSGKT~Tm~G~~---~~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~~---- 242 (1096)
++|||+||||||||||||||||+|+. .++|||||++++||+.++..++..|.|+|||+|||||+|||||++..
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~ 156 (334)
T cd01375 77 LDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEALE 156 (334)
T ss_pred hCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccccc
Confidence 99999999999999999999999976 47899999999999999988888999999999999999999999874
Q ss_pred --CcceEeeCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeE
Q 001340 243 --QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQ 319 (1096)
Q Consensus 243 --~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~sk 319 (1096)
+.+.|++++ .|++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|.|.+............|+
T Consensus 157 ~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~ 236 (334)
T cd01375 157 SLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSK 236 (334)
T ss_pred cCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEEE
Confidence 679999997 67899999999999999999999999999999999999999999999999999886555556778899
Q ss_pred eEEEecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEeeCCC
Q 001340 320 LNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPA 398 (1096)
Q Consensus 320 L~lVDLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~ 398 (1096)
|+||||||||+ .+++..|.+++|+..||+||++|++||.+|+.++..||||||||||+||+|+|||||+|+|||||+|+
T Consensus 237 l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~ 316 (334)
T cd01375 237 LNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVE 316 (334)
T ss_pred EEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCc
Confidence 99999999999 56788899999999999999999999999999876899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 001340 399 SSSMEETHNTLKFASRAK 416 (1096)
Q Consensus 399 ~~~~~ETlsTLrfa~rak 416 (1096)
..+++||++||+||+|++
T Consensus 317 ~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 317 PSNLDETLSTLRFAQRVA 334 (334)
T ss_pred hhhHHHHHHHHHHHHhcC
Confidence 999999999999999985
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.6e-72 Score=645.18 Aligned_cols=316 Identities=42% Similarity=0.667 Sum_probs=287.1
Q ss_pred CEEEEEEeCCCChhhhhcCCeEEEeeC--CCEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEE
Q 001340 101 SISVTIRFRPLSEREFQRGDEIAWYAD--GDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVF 178 (1096)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~~--~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIf 178 (1096)
+|+|+||+||+.+.|...+...++..+ ...+... ..+.|.||+||+++++|++||+.++.|+|+++++|||+|||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~---~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ 78 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVG---TDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVL 78 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEec---CCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCcccee
Confidence 699999999999999777665555433 2344432 25789999999999999999999999999999999999999
Q ss_pred eeccCCCCcccccCCCC------CCCCchHHHHHHHHHHhhcCCC-CeeEEEEeeeeeecceeeecCCCC---CCcceEe
Q 001340 179 AYGVTSSGKTHTMHGDQ------NSPGIIPLAIKDVFSIIQDTPG-REFLLRVSYLEIYNEVINDLLDPT---GQNLRVR 248 (1096)
Q Consensus 179 aYGqTgSGKT~Tm~G~~------~~~GIipr~~~~LF~~i~~~~~-~~~~v~vS~lEIYnE~i~DLL~~~---~~~l~ir 248 (1096)
|||||||||||||+|+. .++|||||++++||+.++.... ..|.|.|||+|||||.|+|||++. ...+.|+
T Consensus 79 ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~ 158 (341)
T cd01372 79 AYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIR 158 (341)
T ss_pred eecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCceEE
Confidence 99999999999999974 5799999999999999987654 789999999999999999999986 4789999
Q ss_pred eCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCC--------CCCcEEEeE
Q 001340 249 EDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD--------EYDGVIFSQ 319 (1096)
Q Consensus 249 e~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~--------~~~~~~~sk 319 (1096)
+++ .|++|.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|.|.+...+. .......|+
T Consensus 159 e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~ 238 (341)
T cd01372 159 EDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSK 238 (341)
T ss_pred ECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEE
Confidence 998 67899999999999999999999999999999999999999999999999999876541 224567899
Q ss_pred eEEEecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCC--CCcCCCCCccchhhccCCCCCccceeEEeeC
Q 001340 320 LNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKA--SHVPYRDSKLTRLLQSSLSGHGHVSLICTVT 396 (1096)
Q Consensus 320 L~lVDLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~--~hiPyRdSkLTrLLqdsLgGnskt~~I~~Is 396 (1096)
|+||||||||+ .+++..|.+++|+..||+||.+|++||.+|+.+.. .||||||||||+||+|+||||++|+||+||+
T Consensus 239 l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vs 318 (341)
T cd01372 239 FHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVS 318 (341)
T ss_pred EEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeC
Confidence 99999999998 56788999999999999999999999999998763 7999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcccc
Q 001340 397 PASSSMEETHNTLKFASRAKRVE 419 (1096)
Q Consensus 397 p~~~~~~ETlsTLrfa~rak~I~ 419 (1096)
|...+++||++||+||+|||+|+
T Consensus 319 p~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 319 PADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred CChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999985
No 20
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=9.7e-71 Score=627.49 Aligned_cols=318 Identities=40% Similarity=0.623 Sum_probs=288.9
Q ss_pred CCCEEEEEEeCCCChhhhhcCCeEEEeeCC--CEEEecCC-CCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCce
Q 001340 99 GDSISVTIRFRPLSEREFQRGDEIAWYADG--DKIVRNEY-NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNG 175 (1096)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~--~~~~~~~~-~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~ 175 (1096)
+|+|+|+||+||+.+.|......++...++ .++..... ...+.|.||+||+++++|++||+. +.|+|+++++|||+
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~ 79 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNV 79 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCce
Confidence 478999999999998876333334433433 45555443 567889999999999999999997 58999999999999
Q ss_pred eEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcCC--CCeeEEEEeeeeeecceeeecCCCC---CCcceEeeC
Q 001340 176 TVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP--GREFLLRVSYLEIYNEVINDLLDPT---GQNLRVRED 250 (1096)
Q Consensus 176 tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~--~~~~~v~vS~lEIYnE~i~DLL~~~---~~~l~ire~ 250 (1096)
||||||+|||||||||+|+..++|||||++++||+.++... +..|.|.|||+|||||+|+|||++. ...+.|+++
T Consensus 80 ~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~ 159 (329)
T cd01366 80 CIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHD 159 (329)
T ss_pred EEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEEC
Confidence 99999999999999999999999999999999999998764 4789999999999999999999986 678999999
Q ss_pred C-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEEecCCCC
Q 001340 251 A-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSE 329 (1096)
Q Consensus 251 ~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSE 329 (1096)
+ .|++|.|++++.|.|++|+..+|..|..+|.++.|.+|..|||||+||+|.|.+.+.. ......|+|+||||||||
T Consensus 160 ~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~--~~~~~~s~l~~VDLaGsE 237 (329)
T cd01366 160 SKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ--TGEQTRGKLNLVDLAGSE 237 (329)
T ss_pred CCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC--CCcEEEEEEEEEECCCCc
Confidence 9 6789999999999999999999999999999999999999999999999999987654 345678999999999999
Q ss_pred C-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHHHHH
Q 001340 330 S-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNT 408 (1096)
Q Consensus 330 r-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ETlsT 408 (1096)
+ .+.+..|.+++|+..||+||++|++||.+|+.+ ..|||||+||||+||+|+||||++|+|||||+|...+++||++|
T Consensus 238 ~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~-~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~t 316 (329)
T cd01366 238 RLKKSGATGDRLKEAQAINKSLSALGDVISALRSK-DSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCS 316 (329)
T ss_pred ccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC-CCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHH
Confidence 8 557888999999999999999999999999987 56999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccc
Q 001340 409 LKFASRAKRVEI 420 (1096)
Q Consensus 409 Lrfa~rak~I~~ 420 (1096)
|+||+|+++|++
T Consensus 317 L~~a~~~~~i~~ 328 (329)
T cd01366 317 LRFASRVRSVEL 328 (329)
T ss_pred HHHHHHhhcccC
Confidence 999999999986
No 21
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=2.1e-69 Score=618.04 Aligned_cols=325 Identities=46% Similarity=0.700 Sum_probs=297.6
Q ss_pred CEEEEEEeCCCChhhhhcCCeEEEeeCCC---EEEecCC---CCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCc
Q 001340 101 SISVTIRFRPLSEREFQRGDEIAWYADGD---KIVRNEY---NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN 174 (1096)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~~---~~~~~~~---~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N 174 (1096)
+|+|+|||||+...|...+...+|..++. .+..... .....|.||+||+++++|++||+.++.|+|+.+++|+|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~ 80 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN 80 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence 59999999999999877766666654433 4544322 35578999999999999999999999999999999999
Q ss_pred eeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcCC-CCeeEEEEeeeeeecceeeecCCCCCCcceEeeCCC-
Q 001340 175 GTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQ- 252 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~-~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~ire~~~- 252 (1096)
+||||||+|||||||||+|+..++|||||++++||+.+.... +..|.|+|||+|||||.|+|||++....+.|++++.
T Consensus 81 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~~~ 160 (335)
T smart00129 81 ATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDKKG 160 (335)
T ss_pred eeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECCCC
Confidence 999999999999999999999999999999999999997654 568999999999999999999999999999999985
Q ss_pred CcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEEecCCCCC-c
Q 001340 253 GTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-S 331 (1096)
Q Consensus 253 g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr-~ 331 (1096)
|+++.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|.|.+...+........|+|+||||||+|+ .
T Consensus 161 ~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~ 240 (335)
T smart00129 161 GVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGSERAS 240 (335)
T ss_pred CEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCCCccc
Confidence 789999999999999999999999999999999999999999999999999987555555667899999999999998 4
Q ss_pred ccccchhhhhhhHHHHhhHHHHHHHHHHhhcC-CCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHHHHHHH
Q 001340 332 KTETTGLRRKEGSYINKSLLTLGTVIGKLSEG-KASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLK 410 (1096)
Q Consensus 332 ~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~-k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ETlsTLr 410 (1096)
+.++.|.+++|+..||+||.+|++||.+|+++ +..|||||+|+||+||+++|||+++|+||+||+|...+++||++||+
T Consensus 241 ~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~ 320 (335)
T smart00129 241 KTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLR 320 (335)
T ss_pred cccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHH
Confidence 56788999999999999999999999999985 56799999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccc
Q 001340 411 FASRAKRVEIYASRN 425 (1096)
Q Consensus 411 fa~rak~I~~~~~~n 425 (1096)
||+++++|++.|++|
T Consensus 321 ~a~~~~~i~~~p~~~ 335 (335)
T smart00129 321 FASRAKEIKNKAIVN 335 (335)
T ss_pred HHHHHhhcccCCCcC
Confidence 999999999999765
No 22
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.9e-70 Score=661.90 Aligned_cols=325 Identities=39% Similarity=0.552 Sum_probs=289.0
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCeEEEeeCC--CEEEecCCCCC----cceecceecCCCCChhHHHhhhhHHHHHHHh
Q 001340 97 RSGDSISVTIRFRPLSEREFQRGDEIAWYADG--DKIVRNEYNPA----TAYAFDRVFGPHANSQEVYDVAARPVVKAAM 170 (1096)
Q Consensus 97 ~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~--~~~~~~~~~~~----~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l 170 (1096)
+.+|||+|+|||||+.+.+.......+...++ ..++....... ..|.||+||+|.++|++||. -+.|+|.++|
T Consensus 311 eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~-e~~~lv~S~l 389 (670)
T KOG0239|consen 311 ELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFE-EVSPLVQSAL 389 (670)
T ss_pred HhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHH-HHHHHHHHHh
Confidence 56899999999999999887653333333332 22333222222 25999999999999999998 5678999999
Q ss_pred cCCceeEEeeccCCCCcccccCC-CCCCCCchHHHHHHHHHHhhcCC-CCeeEEEEeeeeeecceeeecCCCC--CCcce
Q 001340 171 EGVNGTVFAYGVTSSGKTHTMHG-DQNSPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNEVINDLLDPT--GQNLR 246 (1096)
Q Consensus 171 ~G~N~tIfaYGqTgSGKT~Tm~G-~~~~~GIipr~~~~LF~~i~~~~-~~~~~v~vS~lEIYnE~i~DLL~~~--~~~l~ 246 (1096)
+|||+||||||||||||||||.| +++++|||||++.+||..+.... ++.|.+.+||+|||||.|+|||++. ...+.
T Consensus 390 DGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~ 469 (670)
T KOG0239|consen 390 DGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLE 469 (670)
T ss_pred cCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhcccccccccee
Confidence 99999999999999999999999 79999999999999999997643 6899999999999999999999987 47899
Q ss_pred EeeCCC-CcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEEec
Q 001340 247 VREDAQ-GTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDL 325 (1096)
Q Consensus 247 ire~~~-g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDL 325 (1096)
|++++. +.+|.+++.+.|.+.+++..++..|..+|++++|.+|.+|||||+||+|+|...+. ..+....+.|+||||
T Consensus 470 I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~--~t~~~~~g~l~LVDL 547 (670)
T KOG0239|consen 470 IVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINE--LTGIRVTGVLNLVDL 547 (670)
T ss_pred EEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEecccc--CcccccccceeEeec
Confidence 999984 57899999999999999999999999999999999999999999999999987643 334567899999999
Q ss_pred CCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHH
Q 001340 326 AGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEE 404 (1096)
Q Consensus 326 AGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~E 404 (1096)
||||| .+++.+|.|++|+.+||+||++||.||.+|+. +..||||||||||+||+|+|||++||.|+++|||...++.|
T Consensus 548 AGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~-k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~E 626 (670)
T KOG0239|consen 548 AGSERVSKSGVTGERLKEAQNINKSLSALGDVISALAS-KRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFE 626 (670)
T ss_pred ccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh-cCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhh
Confidence 99999 67999999999999999999999999999998 55799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccccc
Q 001340 405 THNTLKFASRAKRVEIYASRN 425 (1096)
Q Consensus 405 TlsTLrfa~rak~I~~~~~~n 425 (1096)
|+++|+||.|++.+...+..-
T Consensus 627 tl~sL~FA~rv~~~~lG~a~~ 647 (670)
T KOG0239|consen 627 TLCSLRFATRVRSVELGSARK 647 (670)
T ss_pred hhhccchHHHhhceecccccc
Confidence 999999999999998776553
No 23
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=6.4e-68 Score=604.17 Aligned_cols=315 Identities=46% Similarity=0.728 Sum_probs=287.3
Q ss_pred CEEEEEEeCCCChhhhhcCCeEEEeeCC-CEEEecCC-----CCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCc
Q 001340 101 SISVTIRFRPLSEREFQRGDEIAWYADG-DKIVRNEY-----NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN 174 (1096)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~-~~~~~~~~-----~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N 174 (1096)
+|+|+||+||+...|.... ..+|..++ +.+.+... .....|.||+||+++++|++||+.++.|+|+++++|||
T Consensus 1 ~i~V~vRvrP~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~ 79 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSE-ESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYN 79 (328)
T ss_pred CeEEEEEcCCCCcccccCC-CcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 5999999999998773333 34444444 66655432 24678999999999999999999999999999999999
Q ss_pred eeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcCC--CCeeEEEEeeeeeecceeeecCCCC--CCcceEeeC
Q 001340 175 GTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP--GREFLLRVSYLEIYNEVINDLLDPT--GQNLRVRED 250 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~--~~~~~v~vS~lEIYnE~i~DLL~~~--~~~l~ire~ 250 (1096)
+||||||+|||||||||+|+..++|||||++++||..+.... +..|.|.+||+|||+|+|+|||++. ...+.|+++
T Consensus 80 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~ 159 (328)
T cd00106 80 GTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLRED 159 (328)
T ss_pred eeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEc
Confidence 999999999999999999999999999999999999998776 5789999999999999999999997 889999999
Q ss_pred C-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEEecCCCC
Q 001340 251 A-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSE 329 (1096)
Q Consensus 251 ~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSE 329 (1096)
+ .|++|.|++++.|.|++|++.+|..|..+|.++.|.+|..|||||+||+|.|..............|+|+||||||+|
T Consensus 160 ~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGse 239 (328)
T cd00106 160 PKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSE 239 (328)
T ss_pred CCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCCC
Confidence 9 688999999999999999999999999999999999999999999999999999876554434788999999999999
Q ss_pred C-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCC-CCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHHHH
Q 001340 330 S-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGK-ASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHN 407 (1096)
Q Consensus 330 r-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k-~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ETls 407 (1096)
+ .+.+..+.+.+|+..||+||.+|++||.+|+.+. ..|||||+||||+||+|+|||+++|+|||||+|...+++||++
T Consensus 240 ~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~ 319 (328)
T cd00106 240 RAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLS 319 (328)
T ss_pred cccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHH
Confidence 8 4566889999999999999999999999999876 5799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 001340 408 TLKFASRAK 416 (1096)
Q Consensus 408 TLrfa~rak 416 (1096)
||+||+|||
T Consensus 320 tL~~a~r~~ 328 (328)
T cd00106 320 TLRFASRAK 328 (328)
T ss_pred HHHHHHhcC
Confidence 999999986
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=7.2e-69 Score=613.65 Aligned_cols=312 Identities=46% Similarity=0.724 Sum_probs=278.6
Q ss_pred EeCCCChhhhhcCCeEEEeeCCC----EEE---ecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEe
Q 001340 107 RFRPLSEREFQRGDEIAWYADGD----KIV---RNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFA 179 (1096)
Q Consensus 107 RvRP~~~~E~~~~~~~~~~~~~~----~~~---~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfa 179 (1096)
||||+++.|...+....+..... ... .........|.||+||+++++|++||+.++.|+|+++|+|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 89999999998888776654321 111 11233456899999999999999999999999999999999999999
Q ss_pred eccCCCCcccccCCC--CCCCCchHHHHHHHHHHhhcCCC---CeeEEEEeeeeeecceeeecCCCC----CCcceEeeC
Q 001340 180 YGVTSSGKTHTMHGD--QNSPGIIPLAIKDVFSIIQDTPG---REFLLRVSYLEIYNEVINDLLDPT----GQNLRVRED 250 (1096)
Q Consensus 180 YGqTgSGKT~Tm~G~--~~~~GIipr~~~~LF~~i~~~~~---~~~~v~vS~lEIYnE~i~DLL~~~----~~~l~ire~ 250 (1096)
||+|||||||||+|+ ..++|||||++++||..+..... ..|.|+|||+|||||.|+|||++. ...+.|+++
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~ 160 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED 160 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence 999999999999999 89999999999999999987554 489999999999999999999987 357999999
Q ss_pred CC-C-cEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCC--cEEEeEeEEEecC
Q 001340 251 AQ-G-TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYD--GVIFSQLNLIDLA 326 (1096)
Q Consensus 251 ~~-g-~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~--~~~~skL~lVDLA 326 (1096)
+. | ++|.|++++.|.++++++.+|..|.++|.++.|.+|..|||||+||+|.|.+........ ....|+|+|||||
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLa 240 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLA 240 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEE
T ss_pred cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeecc
Confidence 95 6 899999999999999999999999999999999999999999999999999987665443 2678999999999
Q ss_pred CCCCcc-ccc-chhhhhhhHHHHhhHHHHHHHHHHhhcC-CCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHH
Q 001340 327 GSESSK-TET-TGLRRKEGSYINKSLLTLGTVIGKLSEG-KASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSME 403 (1096)
Q Consensus 327 GSEr~~-t~~-~g~r~~E~~~INkSL~aLg~vI~aL~~~-k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ 403 (1096)
|+|+.+ ... .+.+.+|+..||+||.+|++||.+|+.+ +..|||||+||||+||+|+|||||+|+||+||+|...+++
T Consensus 241 GsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~ 320 (335)
T PF00225_consen 241 GSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYE 320 (335)
T ss_dssp ESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHH
T ss_pred cccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHH
Confidence 999844 443 4888999999999999999999999997 5679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 001340 404 ETHNTLKFASRAKRV 418 (1096)
Q Consensus 404 ETlsTLrfa~rak~I 418 (1096)
||++||+||.++|+|
T Consensus 321 eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 321 ETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999987
No 25
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-68 Score=601.59 Aligned_cols=319 Identities=37% Similarity=0.566 Sum_probs=281.1
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCeEEEee-CCCEEEecC---------CCCCcceecceecCCCCChhHHHhhhhHHHH
Q 001340 97 RSGDSISVTIRFRPLSEREFQRGDEIAWYA-DGDKIVRNE---------YNPATAYAFDRVFGPHANSQEVYDVAARPVV 166 (1096)
Q Consensus 97 ~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~-~~~~~~~~~---------~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV 166 (1096)
...+.|.|+||-||++..|....+..++.. ..+.+++.+ +-....|.||++||+.++++.||..+++|||
T Consensus 205 v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV 284 (676)
T KOG0246|consen 205 VNEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLV 284 (676)
T ss_pred CccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHH
Confidence 345789999999999999987766544443 444433322 2345689999999999999999999999999
Q ss_pred HHHhcCCceeEEeeccCCCCcccccCCCCC------CCCchHHHHHHHHHHhhcC--CCCeeEEEEeeeeeecceeeecC
Q 001340 167 KAAMEGVNGTVFAYGVTSSGKTHTMHGDQN------SPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLL 238 (1096)
Q Consensus 167 ~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~------~~GIipr~~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL 238 (1096)
..+|+|.-+|+||||||||||||||.|+-. ..||..++.+|+|..+..- ....+.|++||||||+.+|||||
T Consensus 285 ~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL 364 (676)
T KOG0246|consen 285 KTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLL 364 (676)
T ss_pred HHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhh
Confidence 999999999999999999999999988742 4599999999999998742 24578999999999999999999
Q ss_pred CCCCCcceEeeCCC-CcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEE
Q 001340 239 DPTGQNLRVREDAQ-GTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIF 317 (1096)
Q Consensus 239 ~~~~~~l~ire~~~-g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~ 317 (1096)
++ ...|.+.||.+ .+.|.||++..|.+.++++.+|..|+..|+++.|..|..|||||+||+|.+.... .....
T Consensus 365 ~~-k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~-----~~k~h 438 (676)
T KOG0246|consen 365 ND-KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG-----EFKLH 438 (676)
T ss_pred cc-ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC-----cceeE
Confidence 97 56799999985 5789999999999999999999999999999999999999999999999997532 23578
Q ss_pred eEeEEEecCCCCCc--ccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCC-CccceeEEe
Q 001340 318 SQLNLIDLAGSESS--KTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSG-HGHVSLICT 394 (1096)
Q Consensus 318 skL~lVDLAGSEr~--~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgG-nskt~~I~~ 394 (1096)
|+++||||||+||+ .+.+..+.+.||+.|||||++|..||.+|..++ .|+|||.||||.+|+|||-| ||+|+||+|
T Consensus 439 GKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk-~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ 517 (676)
T KOG0246|consen 439 GKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK-SHLPFRGSKLTQVLRDSFIGENSRTCMIAT 517 (676)
T ss_pred eEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCC-CCCCchhhhHHHHHHHhhcCCCCceEEEEE
Confidence 99999999999994 456677788899999999999999999999876 49999999999999999999 999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhccccccc
Q 001340 395 VTPASSSMEETHNTLKFASRAKRVEIYA 422 (1096)
Q Consensus 395 Isp~~~~~~ETlsTLrfa~rak~I~~~~ 422 (1096)
|||....++.||||||||+|+|......
T Consensus 518 ISPg~~ScEhTLNTLRYAdRVKeLsv~~ 545 (676)
T KOG0246|consen 518 ISPGISSCEHTLNTLRYADRVKELSVDG 545 (676)
T ss_pred eCCCcchhhhhHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999886543
No 26
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.6e-67 Score=622.25 Aligned_cols=338 Identities=39% Similarity=0.574 Sum_probs=300.0
Q ss_pred eCCCChhhhhcCCeEEEe--eCCCEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCC
Q 001340 108 FRPLSEREFQRGDEIAWY--ADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSS 185 (1096)
Q Consensus 108 vRP~~~~E~~~~~~~~~~--~~~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgS 185 (1096)
|||+...|...|+..++. +....++++ ....|+||+||+....|.++|+.++.|+++.+|.|||+||+|||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig---~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgs 77 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG---KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGS 77 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeec---CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCC
Confidence 699999998888765543 333444433 346799999999999999999999999999999999999999999999
Q ss_pred CcccccCCC----CCCCCchHHHHHHHHHHhhcCCCCeeEEEEeeeeeecceeeecCCCCC--CcceEeeCCCC-cEeeC
Q 001340 186 GKTHTMHGD----QNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG--QNLRVREDAQG-TYVEG 258 (1096)
Q Consensus 186 GKT~Tm~G~----~~~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~~--~~l~ire~~~g-~~v~g 258 (1096)
||||||.+. .+..|||||++.++|..|.......|.|.|||+|||++.|+|||.|.. .++.+++ +.| +.+.|
T Consensus 78 gkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~it~~g 156 (913)
T KOG0244|consen 78 GKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGEITIRG 156 (913)
T ss_pred CceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCceEEEe
Confidence 999999887 344699999999999999988888899999999999999999999653 4577888 655 88999
Q ss_pred ceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEEecCCCCC-cccccch
Q 001340 259 IKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-SKTETTG 337 (1096)
Q Consensus 259 l~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr-~~t~~~g 337 (1096)
++++.|.+..+++..|..|...|++++|+||..|||||+||+|.+++...... .....++|+||||||||| .+++++|
T Consensus 157 lte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~-~s~~~sKlhlVDLAGSER~kkT~a~g 235 (913)
T KOG0244|consen 157 LTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK-RSSFCSKLHLVDLAGSERVKKTKAEG 235 (913)
T ss_pred ehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc-cchhhhhhheeeccccccccccccch
Confidence 99999999999999999999999999999999999999999999987654333 235679999999999999 6799999
Q ss_pred hhhhhhHHHHhhHHHHHHHHHHhhcCC-CCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHHHHHHHHHHHhc
Q 001340 338 LRRKEGSYINKSLLTLGTVIGKLSEGK-ASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAK 416 (1096)
Q Consensus 338 ~r~~E~~~INkSL~aLg~vI~aL~~~k-~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ETlsTLrfa~rak 416 (1096)
.|++||++||.+|++||+||++|.+.+ ..|||||||||||||||+||||+.|+||+||||+..++.||++||+||.||+
T Consensus 236 drlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak 315 (913)
T KOG0244|consen 236 DRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAK 315 (913)
T ss_pred hhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHH
Confidence 999999999999999999999998754 4799999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCH-HHHHHHHHHHHHHHHHHHHHHH
Q 001340 417 RVEIYASRNKIIDE-KSLIKKYQREISSLKEELDQLK 452 (1096)
Q Consensus 417 ~I~~~~~~n~~~~~-~~~i~~~~~ei~~Lk~el~~~~ 452 (1096)
+|+|+|++|. |+ ...+..++.+|+.|+.+|-..+
T Consensus 316 ~iknk~vvN~--d~~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 316 QIKNKPVVNQ--DPKSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred Hhcccccccc--cHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999998 33 3456778888888888877654
No 27
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.7e-66 Score=598.99 Aligned_cols=329 Identities=38% Similarity=0.609 Sum_probs=285.5
Q ss_pred CCCCCCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEe------------cCCCCCcceecceecCCCCChhHHHhhhh
Q 001340 95 PQRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVR------------NEYNPATAYAFDRVFGPHANSQEVYDVAA 162 (1096)
Q Consensus 95 ~~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~------------~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~ 162 (1096)
.....+.|.|+||+||+.+.-.+.| ++...+..+++. +.......|.|.+||+|+++|.+||+.++
T Consensus 26 S~~~~d~v~v~~rvrP~~~~~~~~g--~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~ 103 (809)
T KOG0247|consen 26 SCESKDPVLVVCRVRPLSDASEDEG--CLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTV 103 (809)
T ss_pred chhhhcchheeEeecCCCCCccccc--eEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHh
Confidence 3456788999999999986222222 222223333321 22234567999999999999999999999
Q ss_pred HHHHHHHhcCCceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhc----------------------------
Q 001340 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD---------------------------- 214 (1096)
Q Consensus 163 ~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~---------------------------- 214 (1096)
.|+|.+++.|.|..+|.||.|||||||||+|++..+||+||++.-||+.|++
T Consensus 104 ~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~l 183 (809)
T KOG0247|consen 104 APLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQL 183 (809)
T ss_pred HHHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999988864
Q ss_pred ------------C-------------------------CCCeeEEEEeeeeeecceeeecCCCCC-----Cc-ceEeeCC
Q 001340 215 ------------T-------------------------PGREFLLRVSYLEIYNEVINDLLDPTG-----QN-LRVREDA 251 (1096)
Q Consensus 215 ------------~-------------------------~~~~~~v~vS~lEIYnE~i~DLL~~~~-----~~-l~ire~~ 251 (1096)
. .+..|.|+|||+|||||-|||||.+.+ +. ..+++|.
T Consensus 184 kr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~ 263 (809)
T KOG0247|consen 184 KREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDT 263 (809)
T ss_pred hhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhcc
Confidence 0 123589999999999999999998653 22 5677887
Q ss_pred CC-cEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEEecCCCCC
Q 001340 252 QG-TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES 330 (1096)
Q Consensus 252 ~g-~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr 330 (1096)
+| .||.|+++|.|.+.+|++.+|..|.++|++++|..|..|||||+||+|.|.+.........++.|.|.|||||||||
T Consensus 264 ~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSER 343 (809)
T KOG0247|consen 264 NGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSER 343 (809)
T ss_pred CCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccchh
Confidence 65 69999999999999999999999999999999999999999999999999987766555678899999999999999
Q ss_pred -cccccchhhhhhhHHHHhhHHHHHHHHHHhhcC----CCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHH
Q 001340 331 -SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG----KASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEET 405 (1096)
Q Consensus 331 -~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~----k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ET 405 (1096)
.+++++|.|++|+++||.||++||+||.+|..+ ...+|||||||||++++.+|.|+.+++||.||+|...+|+|+
T Consensus 344 t~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEn 423 (809)
T KOG0247|consen 344 TNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDEN 423 (809)
T ss_pred cccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHH
Confidence 679999999999999999999999999999763 236999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccc
Q 001340 406 HNTLKFASRAKRVEIYASRN 425 (1096)
Q Consensus 406 lsTLrfa~rak~I~~~~~~n 425 (1096)
++.|+||.-|..|.+...++
T Consensus 424 l~vlkFaeiaq~v~v~~~~~ 443 (809)
T KOG0247|consen 424 LNVLKFAEIAQEVEVARPVI 443 (809)
T ss_pred HHHHHHHHhcccccccCccc
Confidence 99999999999998766553
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4e-61 Score=578.96 Aligned_cols=342 Identities=44% Similarity=0.662 Sum_probs=292.3
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCcee
Q 001340 97 RSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGT 176 (1096)
Q Consensus 97 ~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~t 176 (1096)
..-.+++++++..|-...+ ..+.......+.........|.||+||++.++|++||+..+.|+++.++.|||+|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~T 92 (568)
T COG5059 19 KSVSDIKSTIRIIPGELGE------RLINTSKKSHVSLEKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCT 92 (568)
T ss_pred eeecCceEEEeecCCCcch------heeecccccccccccccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccce
Confidence 4456789999999964432 2233222222211111256799999999999999999999999999999999999
Q ss_pred EEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcCC-CCeeEEEEeeeeeecceeeecCCCCCCcceEeeCC-CCc
Q 001340 177 VFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA-QGT 254 (1096)
Q Consensus 177 IfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~-~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~ire~~-~g~ 254 (1096)
|||||||||||||||.|...++||||+++.+||+.+.... +..|.|.|||+|||||+++|||.|....+.++++. .|+
T Consensus 93 vfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v 172 (568)
T COG5059 93 VFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGV 172 (568)
T ss_pred EEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccccccccccCCCce
Confidence 9999999999999999999999999999999999997654 46799999999999999999999988778889987 689
Q ss_pred EeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEEecCCCCC-ccc
Q 001340 255 YVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-SKT 333 (1096)
Q Consensus 255 ~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr-~~t 333 (1096)
+|.|++++.|.+.++++.+|..|..+|+++.|.+|..|||||+||+|.+.+....... ...++|+||||||||+ ..+
T Consensus 173 ~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~--~~~~~l~lvDLagSE~~~~~ 250 (568)
T COG5059 173 KVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGT--SETSKLSLVDLAGSERAART 250 (568)
T ss_pred EeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccc--eecceEEEEeeccccccchh
Confidence 9999999999999999999999999999999999999999999999999987654432 2337999999999998 456
Q ss_pred ccchhhhhhhHHHHhhHHHHHHHHHHhhc-CCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHHHHHHHHH
Q 001340 334 ETTGLRRKEGSYINKSLLTLGTVIGKLSE-GKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFA 412 (1096)
Q Consensus 334 ~~~g~r~~E~~~INkSL~aLg~vI~aL~~-~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ETlsTLrfa 412 (1096)
+..+.|++||..||+||++||+||.+|.+ .+..|||||+|||||+|+++|||+++|+|||||+|...++++|++||+||
T Consensus 251 ~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a 330 (568)
T COG5059 251 GNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFA 330 (568)
T ss_pred hcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHH
Confidence 88999999999999999999999999987 44579999999999999999999999999999999999999999999999
Q ss_pred HHhcccccccccccccCHHHHHHHHHHHHHHHHH
Q 001340 413 SRAKRVEIYASRNKIIDEKSLIKKYQREISSLKE 446 (1096)
Q Consensus 413 ~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~ 446 (1096)
.||+.|++.+..|...+...-+..+...+...+.
T Consensus 331 ~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 364 (568)
T COG5059 331 SRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRS 364 (568)
T ss_pred HHHhhcCCcccccCcCcchHHHHHHHhhhhhhhh
Confidence 9999999999998532322233444444443333
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=3e-48 Score=408.04 Aligned_cols=177 Identities=41% Similarity=0.660 Sum_probs=165.5
Q ss_pred HHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcCCCCeeEEEEeeeeeecceeee
Q 001340 157 VYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVIND 236 (1096)
Q Consensus 157 Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~D 236 (1096)
||+.++ |+|+.+++|||+||||||||||||||||+|+..++||||+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~----------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD----------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence 999999 99999999999999999999999999999999999999999988
Q ss_pred cCCCCCCcceEeeCCCCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCC-CCCcE
Q 001340 237 LLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-EYDGV 315 (1096)
Q Consensus 237 LL~~~~~~l~ire~~~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~-~~~~~ 315 (1096)
++.+|..|..+|.++.|.+|..|||||+||+|+|.+..... .....
T Consensus 58 ---------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~~~ 104 (186)
T cd01363 58 ---------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQP 104 (186)
T ss_pred ---------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCccce
Confidence 78899999999999999999999999999999999876543 22456
Q ss_pred EEeEeEEEecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEe
Q 001340 316 IFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICT 394 (1096)
Q Consensus 316 ~~skL~lVDLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~ 394 (1096)
..++|+||||||||+ .+++..+.+++|+.+||+||.+|++||.+|+++. .||||||||||+||||+|||||+|+||+|
T Consensus 105 ~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~-~~vpyr~SkLT~lL~~~L~g~~~t~~i~~ 183 (186)
T cd01363 105 KVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERD-SHVPYRESKLTRLLQDSLGGNSRTLMVAC 183 (186)
T ss_pred eeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCC-CCCCCcccHHHHHHHHhcCCCCeEEEEEE
Confidence 789999999999998 5677889999999999999999999999999854 69999999999999999999999999999
Q ss_pred eCC
Q 001340 395 VTP 397 (1096)
Q Consensus 395 Isp 397 (1096)
|||
T Consensus 184 vsP 186 (186)
T cd01363 184 ISP 186 (186)
T ss_pred eCc
Confidence 998
No 30
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.5e-13 Score=164.99 Aligned_cols=284 Identities=19% Similarity=0.262 Sum_probs=174.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHH-hHHHHHHHHH-hhhHHHHHHH-HHHHHHHHHHHhhcCCCCCCCCCC-------CC-
Q 001340 680 QQTVTRLMSQCNEKAFELEIKSA-DNRILQEQLQ-NKCSENKKLQ-EKVNLLEQQLACQNGDKSAGSSGQ-------GT- 748 (1096)
Q Consensus 680 ~~~v~~L~~~l~e~~~ele~k~a-e~~~lqeqL~-~a~~e~~~L~-~~l~~lk~~l~~~~e~~~~~~~~~-------~e- 748 (1096)
.-.+..++..+++...++++|++ |...+.++|. ....++.+++ -.++...++..+..+..+...... .+
T Consensus 377 ~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~ 456 (698)
T KOG0978|consen 377 ELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEM 456 (698)
T ss_pred HHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455577778888888888754 6666666663 3344455555 223333332211111000000000 00
Q ss_pred --chHH---HHHHHHHHHhhHHHHHHH-----------HHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001340 749 --SDEY---VDELRKKVQSQETENEKL-----------KLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNL 812 (1096)
Q Consensus 749 --~ee~---~~el~~~~~~Q~~Eie~l-----------k~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l 812 (1096)
...+ +-+-+.++..|..+.|++ .|.+..|.+++..|..++..+..........+..++.|+..|
T Consensus 457 ~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~l 536 (698)
T KOG0978|consen 457 ETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGL 536 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0001 122344555565555544 677888888888888888888888888888888888888888
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccCccccccCcccccccCCCCCchhHH
Q 001340 813 AGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLK 892 (1096)
Q Consensus 813 ~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qiq~v~~dar~~lq~l~~~~~e~l~~~~~~~~~~~~~~~~~~w~~~~~~K 892 (1096)
...+.++..+...+..-++..+..+........
T Consensus 537 t~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~----------------------------------------------- 569 (698)
T KOG0978|consen 537 TSNESKLIKELTTLTQSLEMLKKKAQEAKQSLE----------------------------------------------- 569 (698)
T ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 888888877777777777766655544432221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH---HHHhhHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcCCCCccccccCCCCCcc
Q 001340 893 LELQARKQREAALEAALAEKEFLED---EYRKKVEESKRREEALENDLANMWVLVAKLKKEVGSVPELNTVERHSNGEDR 969 (1096)
Q Consensus 893 ~e~~a~~erq~aLE~el~~k~~~ee---El~~~leE~kkk~~~Le~el~~~~~l~~~Lkke~~~~~~~~~~~k~~d~~~~ 969 (1096)
.++..++.--....+++. ++...++..+++...|+.|+ +.|+..+........+
T Consensus 570 -------~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~-------e~L~~kle~~k~~~~~--------- 626 (698)
T KOG0978|consen 570 -------DLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEEL-------ERLKRKLERLKKEESG--------- 626 (698)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcccccc---------
Confidence 222222222222222333 33466888888888888888 8888877541100000
Q ss_pred cCCCCCCccccccccccccccccCCCcchhhhhhhccCCCCCCCCCCCChhHHHHHHHHHHHHHHHHhhhcCCCCCcccc
Q 001340 970 VCDPKANETDCNTVLKDRHFLEVSKPADENSVERQVLDVPKPADETPKEEPLVARLKARMQEMKEKEQKYQGNGDPNSHM 1049 (1096)
Q Consensus 970 ~~~~k~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~ 1049 (1096)
..-.+.|.++++.+++.. .
T Consensus 627 -------------------------------------------------~s~d~~L~EElk~yK~~L------------k 645 (698)
T KOG0978|consen 627 -------------------------------------------------ASADEVLAEELKEYKELL------------K 645 (698)
T ss_pred -------------------------------------------------ccccHHHHHHHHHHHhce------------e
Confidence 012345667778888777 8
Q ss_pred cccccccccceEEeCCCCcccchhhh-----hcCCCCCCCcccccc--eeecc
Q 001340 1050 CKVCFESPTAAILLPCRHFCLCKSCS-----LACSECPICRTKISD--RLFAF 1095 (1096)
Q Consensus 1050 C~IC~~~~~~~vl~pCgH~~~C~~C~-----~~~~~CPiCr~~i~~--~i~if 1095 (1096)
|++|.++++++|+..|||+ ||..|. .+.++||.|+.+|+. +.+||
T Consensus 646 Cs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 646 CSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred CCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 9999999999999999998 999994 345889999999875 34444
No 31
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=99.42 E-value=7.1e-12 Score=154.68 Aligned_cols=275 Identities=19% Similarity=0.209 Sum_probs=178.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhH--
Q 001340 639 KVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCS-- 716 (1096)
Q Consensus 639 ~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~-- 716 (1096)
..++++|++++++++++++.++++..... +....+..++.+|++....+..+.++...|..-..+-.-
T Consensus 507 ~~~~~~l~~~~~~~~eele~~q~~~~~~~----------~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~i 576 (1317)
T KOG0612|consen 507 EAKKRKLEALVRQLEEELEDAQKKNDNAA----------DSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQI 576 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHH
Confidence 35688999999999999999977665322 345567778888888877777666655544443333333
Q ss_pred -----HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHH---HHHhhHHHHHHHHHHHHHhHHhhhhHHHHH
Q 001340 717 -----ENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRK---KVQSQETENEKLKLEHVQLSEENSGLHVQN 788 (1096)
Q Consensus 717 -----e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~---~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~ 788 (1096)
+...++.++..|+.-...+.+ +......++.+ .-..=.+++..++.+...|++.+..+..+.
T Consensus 577 q~~~e~~~~~~d~l~~le~~k~~ls~----------~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l 646 (1317)
T KOG0612|consen 577 QQELEENRDLEDKLSLLEESKSKLSK----------ENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKEL 646 (1317)
T ss_pred HHHhhccccHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHH
Confidence 333344444443333211111 00000011110 001112344566777777777777777777
Q ss_pred HHHHHHhhHHHHHHHHHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHhhh--hhhh
Q 001340 789 QKLAEEASYAKELASAAA---------VELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM----QTVNG--VNRK 853 (1096)
Q Consensus 789 ~kl~~e~~~~k~la~aa~---------~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qi----q~v~~--dar~ 853 (1096)
.++.++....-+.++..+ -+++.+-.++.++.+++.++ +|..+ ++++ +||++ ++|.
T Consensus 647 ~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~-------e~~~~e~~~~lseek~ar~ 717 (1317)
T KOG0612|consen 647 LKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL--RLQDK-------EAQMKEIESKLSEEKSARE 717 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhH-------HHHHHHHHHHhcccccHHH
Confidence 776664444444444433 34455555555555555555 33222 4444 99999 9999
Q ss_pred hhhhhhhhccccccCccccccCcccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----hhHHHHHH
Q 001340 854 YSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYR-----KKVEESKR 928 (1096)
Q Consensus 854 ~lq~l~~~~~e~l~~~~~~~~~~~~~~~~~~w~~~~~~K~e~~a~~erq~aLE~el~~k~~~eeEl~-----~~leE~kk 928 (1096)
|+++++.+++++++.++++ .....+..|..++..+.+..+.++++.+||+|+.++-.++.||. ...+.+++
T Consensus 718 k~e~~~~~i~~e~e~L~~d----~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t~~~Ek 793 (1317)
T KOG0612|consen 718 KAENLLLEIEAELEYLSND----YKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNTKMLEK 793 (1317)
T ss_pred HHHHHHHHHHHHHHHHhhh----hhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhccHHHHH
Confidence 9999999999999999884 33445888999999999999999999999999999999999986 12255688
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhhcC
Q 001340 929 REEALENDLANMWVLVAKLKKEVGS 953 (1096)
Q Consensus 929 k~~~Le~el~~~~~l~~~Lkke~~~ 953 (1096)
++..+.+++ ..+|+.++.
T Consensus 794 q~~~~~~~l-------~~~K~~~e~ 811 (1317)
T KOG0612|consen 794 QLKKLLDEL-------AELKKQLEE 811 (1317)
T ss_pred HHHHHHHHH-------HHHHHHHHH
Confidence 888888888 666665543
No 32
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.4e-12 Score=144.90 Aligned_cols=81 Identities=30% Similarity=0.664 Sum_probs=68.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhhcCCCC----CcccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcc
Q 001340 1015 TPKEEPLVARLKARMQEMKEKEQKYQGNGD----PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRT 1086 (1096)
Q Consensus 1015 ~~~~~~~~~~l~~~l~~~k~~~~~~~~~~~----~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCr~ 1086 (1096)
..++..++++..+.++++....+.....+. +++.+|+||++..++++++||||+|+|..|+... .+||+||+
T Consensus 254 ~~kQ~~~v~g~~y~LqEiyGien~~v~~~~~~~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRq 333 (349)
T KOG4265|consen 254 VLKQILWVDGTRYLLQEIYGIENSTVEGTDADESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQ 333 (349)
T ss_pred eeeeEEEEeCceeeeehhhccccCCCCCCccccccCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCcccc
Confidence 345667888889999999987755444444 6788999999999999999999999999998766 45999999
Q ss_pred cccceeecc
Q 001340 1087 KISDRLFAF 1095 (1096)
Q Consensus 1087 ~i~~~i~if 1095 (1096)
+|...+.|+
T Consensus 334 pi~~ll~i~ 342 (349)
T KOG4265|consen 334 PIEELLEIY 342 (349)
T ss_pred chHhhheec
Confidence 999988876
No 33
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=7.8e-12 Score=101.61 Aligned_cols=49 Identities=37% Similarity=1.046 Sum_probs=44.6
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccceeeccC
Q 001340 1048 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISDRLFAFT 1096 (1096)
Q Consensus 1048 ~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-----~~CPiCr~~i~~~i~if~ 1096 (1096)
.+|.||++++.+.||..|||+|+|..|+.+. ..||+||++|..+|+.|.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~ 61 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYR 61 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhc
Confidence 4799999999999999999999999997665 449999999999999884
No 34
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=4.1e-10 Score=120.94 Aligned_cols=50 Identities=32% Similarity=0.895 Sum_probs=48.0
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeeccC
Q 001340 1047 SHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAFT 1096 (1096)
Q Consensus 1047 ~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~~~CPiCr~~i~~~i~if~ 1096 (1096)
...|.|||+.+++++|++|||++.|..|+.+|..|||||+.|..+++||.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~ 349 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFR 349 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhc
Confidence 56899999999999999999999999999999999999999999999994
No 35
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.77 E-value=2.1e-09 Score=89.08 Aligned_cols=43 Identities=44% Similarity=1.228 Sum_probs=37.9
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001340 1048 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISD 1090 (1096)
Q Consensus 1048 ~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCr~~i~~ 1090 (1096)
..|.||++++.+++++||||.++|..|+..+ ..||+||++|.+
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 4799999999999999999999999998776 779999999976
No 36
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=4.5e-09 Score=117.33 Aligned_cols=55 Identities=33% Similarity=0.896 Sum_probs=49.9
Q ss_pred CCCCcccccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeeccC
Q 001340 1042 NGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAFT 1096 (1096)
Q Consensus 1042 ~~~~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~~~CPiCr~~i~~~i~if~ 1096 (1096)
+..+-+..|+||.+++.+++|+||||+|+|..|+....+||+||+.|...+++|.
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~ 354 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYR 354 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhc
Confidence 3445566899999999999999999999999999999999999999999998873
No 37
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.51 E-value=0.00021 Score=85.43 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=48.9
Q ss_pred HHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHh
Q 001340 701 SADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEE 780 (1096)
Q Consensus 701 ~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee 780 (1096)
..++..|..++.++..++..|+..+..+.++....-........-..+.+....+++.++.....+++....+...+..+
T Consensus 205 ~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e 284 (546)
T PF07888_consen 205 KEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQE 284 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 34445555555555555555555555555544100000000000001122222233444444444444444444444444
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001340 781 NSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQ 822 (1096)
Q Consensus 781 ~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~ 822 (1096)
+..|..++..+-+-.......+.-++.+|.+++.-=++.+++
T Consensus 285 ~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~ae 326 (546)
T PF07888_consen 285 NEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAE 326 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433333333334444444444433444443
No 38
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.8e-07 Score=100.09 Aligned_cols=47 Identities=38% Similarity=0.914 Sum_probs=44.7
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeecc
Q 001340 1049 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1095 (1096)
Q Consensus 1049 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~~~CPiCr~~i~~~i~if 1095 (1096)
.|..|..+...++++||+|+|+|..|...+..||+|+.++...+.+|
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVN 206 (207)
T ss_pred cceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeecc
Confidence 49999999999999999999999999988889999999999999887
No 39
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.21 E-value=0.0029 Score=84.55 Aligned_cols=14 Identities=29% Similarity=0.328 Sum_probs=11.8
Q ss_pred EeeccCCCCccccc
Q 001340 178 FAYGVTSSGKTHTM 191 (1096)
Q Consensus 178 faYGqTgSGKT~Tm 191 (1096)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 44899999999875
No 40
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.15 E-value=0.0012 Score=79.27 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=10.9
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHH
Q 001340 884 WNLDPDDLKLELQARKQREAALEAAL 909 (1096)
Q Consensus 884 ~w~~~~~~K~e~~a~~erq~aLE~el 909 (1096)
||+.+..++..+.+.++++..|..++
T Consensus 355 ~~qEk~~l~~~~e~~k~~ie~L~~el 380 (546)
T PF07888_consen 355 WAQEKQALQHSAEADKDEIEKLSREL 380 (546)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44444444444444444444444333
No 41
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.1e-06 Score=93.32 Aligned_cols=51 Identities=22% Similarity=0.735 Sum_probs=41.5
Q ss_pred CCcccccccccccccceEEeCCCCcccchhhhhc-------CCCCCCCcccc--cceeecc
Q 001340 1044 DPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-------CSECPICRTKI--SDRLFAF 1095 (1096)
Q Consensus 1044 ~~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~-------~~~CPiCr~~i--~~~i~if 1095 (1096)
..+...|.||++...+.||.+|||+ ||..|... .+.||+|+..| ..+|+||
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 3455689999999999999999999 99999433 35599999965 5567776
No 42
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.10 E-value=0.0064 Score=81.22 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=12.1
Q ss_pred eEEeeccCCCCccccc
Q 001340 176 TVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1096)
...-+|++|||||..|
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIV 40 (1179)
T ss_pred cEEEECCCCCChhHHH
Confidence 4456788888888776
No 43
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.05 E-value=0.0071 Score=80.89 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=7.9
Q ss_pred CCCCccchhhcc
Q 001340 370 YRDSKLTRLLQS 381 (1096)
Q Consensus 370 yRdSkLTrLLqd 381 (1096)
+|.+++..++.+
T Consensus 55 ~r~~~~~~~i~~ 66 (1164)
T TIGR02169 55 MRAERLSDLISN 66 (1164)
T ss_pred hhhhhHHHhhcc
Confidence 466666677666
No 44
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.00 E-value=0.0074 Score=80.62 Aligned_cols=75 Identities=19% Similarity=0.165 Sum_probs=33.2
Q ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 770 LKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 844 (1096)
Q Consensus 770 lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qi 844 (1096)
+..+...+.++...+..+...+..+..........+..+++.+..++..+..+...+..++...+..+..++..+
T Consensus 794 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 868 (1179)
T TIGR02168 794 LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI 868 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 333333333444444444443333333333344444445555555555555555555544444444444444333
No 45
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.95 E-value=0.0056 Score=81.62 Aligned_cols=237 Identities=17% Similarity=0.140 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhccc
Q 001340 604 DLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRI--------------IENGEA 669 (1096)
Q Consensus 604 d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~Q~qkL~~elrdKeeei~~L~qki--------------~~s~~~ 669 (1096)
-.|++++-...+++..-.....-+-......+.+--.+...|.+++...+.+++.|.... ......
T Consensus 1063 ~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S 1142 (1822)
T KOG4674|consen 1063 IKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLS 1142 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 345555555555555555544444444455566666677778888888888888887766 111221
Q ss_pred CCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC---
Q 001340 670 SMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQ--- 746 (1096)
Q Consensus 670 s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~--- 746 (1096)
..... ..+++.-|..|+.+.+-..-+|++.-.|+.-|++|..-.+-.+.+|+-.+...+.....-.. ...++.
T Consensus 1143 ~~~~g-~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~---s~~e~~~i~ 1218 (1822)
T KOG4674|consen 1143 AMLLG-LSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAV---SDDEHKEIL 1218 (1822)
T ss_pred ccccc-hHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh---hhhhhhHHH
Confidence 11111 34678888889888888888888888899999998777666666666666665554400000 000000
Q ss_pred --------------------CCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHH
Q 001340 747 --------------------GTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAA 806 (1096)
Q Consensus 747 --------------------~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~ 806 (1096)
....+.+.|+..++.+=..++..|.-++..|.++......++.+|-.+..-.|.++-.+-
T Consensus 1219 ~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~ 1298 (1822)
T KOG4674|consen 1219 EKVEEVNLLRESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLL 1298 (1822)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011122223333333334444444555555555556666667777777777888888877
Q ss_pred HHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 807 VELKNL-AGEVTKLSLQNAKLEKELLAARESMHSRGAAM 844 (1096)
Q Consensus 807 ~qlk~l-~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qi 844 (1096)
.+++|. ....++|..++.+|.+||..++..++.....+
T Consensus 1299 ~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~ 1337 (1822)
T KOG4674|consen 1299 EKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKEL 1337 (1822)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766 45688888899999999888877776665433
No 46
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.94 E-value=0.034 Score=70.33 Aligned_cols=229 Identities=17% Similarity=0.206 Sum_probs=156.0
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc-------c
Q 001340 602 QMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMAN-------A 674 (1096)
Q Consensus 602 ~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~-------~ 674 (1096)
+++.|......+..|+......|. ..+.++++++..+....++|+.|.-++...|.++.+. .
T Consensus 115 q~~rl~~E~er~~~El~~lr~~lE-----------~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~ 183 (775)
T PF10174_consen 115 QFERLQAERERLQRELERLRKTLE-----------ELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALR 183 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHH
Confidence 455555555556666666555554 3456788999999999999999999885444432211 1
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHH-------------HHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 001340 675 SMVDMQQTVTRLMSQCNEKAFELE-------------IKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSA 741 (1096)
Q Consensus 675 ~~~e~~~~v~~L~~~l~e~~~ele-------------~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~ 741 (1096)
-+.+....+..|...++++.-++. ...|.-.++|.-+..++..|..+++-|..|+..+..+.-.- .
T Consensus 184 ~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~-~ 262 (775)
T PF10174_consen 184 RIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRG-E 262 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c
Confidence 223334445555555555544441 11344557888889999999998666666666653222100 1
Q ss_pred CCCCCCCchHH---HHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001340 742 GSSGQGTSDEY---VDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTK 818 (1096)
Q Consensus 742 ~~~~~~e~ee~---~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~k 818 (1096)
... .+.+.. +..-..+....+..++.++.+...=..|...+..+++.+...+.-.+..+..++.+|...-.+.+.
T Consensus 263 ~~~--~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~ 340 (775)
T PF10174_consen 263 LSE--ADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEM 340 (775)
T ss_pred ccc--cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 122222 222234455566778999999999889999999999999999998999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 819 LSLQNAKLEKELLAARESMHSRGAAM 844 (1096)
Q Consensus 819 L~~~n~qL~~Ele~~k~~~~~~e~qi 844 (1096)
|..++..|+.+|+.+...+..-..++
T Consensus 341 Lqsdve~Lr~rle~k~~~l~kk~~~~ 366 (775)
T PF10174_consen 341 LQSDVEALRFRLEEKNSQLEKKQAQI 366 (775)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888777777666666
No 47
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.92 E-value=0.0073 Score=81.84 Aligned_cols=179 Identities=18% Similarity=0.219 Sum_probs=106.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHH
Q 001340 638 SKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSE 717 (1096)
Q Consensus 638 ~~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e 717 (1096)
...|++.|..+++.|+.++..+..++..--. .++.++++|..|.+.+++..=+|+...+...-+..+..+...+
T Consensus 1060 ~~~~~~el~~~l~kke~El~~l~~k~e~e~~------~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~e 1133 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESELSQLQSKLEDEQA------EVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEE 1133 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999888888853222 5567888888888888888878877766666666666666777
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCC-----------CCCCCCCchHHHHHHHHHH----HhhHHHHHHHH-------HHHH
Q 001340 718 NKKLQEKVNLLEQQLACQNGDKSA-----------GSSGQGTSDEYVDELRKKV----QSQETENEKLK-------LEHV 775 (1096)
Q Consensus 718 ~~~L~~~l~~lk~~l~~~~e~~~~-----------~~~~~~e~ee~~~el~~~~----~~Q~~Eie~lk-------~e~~ 775 (1096)
+.+|.++++..-..+....+..+. ........+.++.++.++. .....++++++ .++.
T Consensus 1134 le~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~ 1213 (1930)
T KOG0161|consen 1134 LEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKS 1213 (1930)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766666663333333330000 0000112333333333222 12223344444 4555
Q ss_pred HhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001340 776 QLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQ 822 (1096)
Q Consensus 776 ~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~ 822 (1096)
.|+.+...|..++..+....-..--+.++++.++.++..++.++..+
T Consensus 1214 ~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~ 1260 (1930)
T KOG0161|consen 1214 DLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERL 1260 (1930)
T ss_pred HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555666777777777766666553
No 48
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.88 E-value=3.9e-06 Score=87.78 Aligned_cols=49 Identities=20% Similarity=0.750 Sum_probs=39.4
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhc--------------------CCCCCCCcccccc--eeecc
Q 001340 1046 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLA--------------------CSECPICRTKISD--RLFAF 1095 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~--------------------~~~CPiCr~~i~~--~i~if 1095 (1096)
....|.||++...+.++.+|||. ||..|... ...||+||..|.. .+++|
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 44689999999999999999998 99999532 1369999999865 44444
No 49
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.87 E-value=0.016 Score=77.65 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHH
Q 001340 601 DQMDLLVEQVKMLAGEIAFSSSNLK 625 (1096)
Q Consensus 601 d~~d~l~eq~k~l~~e~a~~~~~Lk 625 (1096)
.+++-+..++..+..++......+.
T Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~ 698 (1163)
T COG1196 674 EELAELEAQLEKLEEELKSLKNELR 698 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555444444
No 50
>PRK02224 chromosome segregation protein; Provisional
Probab=97.83 E-value=0.028 Score=73.37 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHH-------HHHHhHHHHHHHH
Q 001340 639 KVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELE-------IKSADNRILQEQL 711 (1096)
Q Consensus 639 ~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele-------~k~ae~~~lqeqL 711 (1096)
+.+...|.+++++.++.+..+.+.+..... .+..+..++..+..++++..-.++ ........+++++
T Consensus 348 ~~~~~~le~~~~~l~~~~~~l~~~~~~~~~------~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~ 421 (880)
T PRK02224 348 REDADDLEERAEELREEAAELESELEEARE------AVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREER 421 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHH
Confidence 344556666666666666555555532221 122233344444444444322222 2223344455555
Q ss_pred HhhhHHHHHHHHHHHHHHHHH
Q 001340 712 QNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 712 ~~a~~e~~~L~~~l~~lk~~l 732 (1096)
..+...+..++..+..++..+
T Consensus 422 ~~l~~~~~~~~~~~~~~~~~l 442 (880)
T PRK02224 422 DELREREAELEATLRTARERV 442 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555444444444
No 51
>PRK11637 AmiB activator; Provisional
Probab=97.79 E-value=0.004 Score=74.54 Aligned_cols=86 Identities=16% Similarity=0.226 Sum_probs=45.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHH
Q 001340 638 SKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSE 717 (1096)
Q Consensus 638 ~~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e 717 (1096)
.+.+++.+..+++.++.++..+.+++. +++.++..+..+++...-++.....+...++.++...+.+
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~-------------~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~e 111 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRA-------------SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNAS 111 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444443 3344444444444444444444455555556666666666
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 001340 718 NKKLQEKVNLLEQQLACQN 736 (1096)
Q Consensus 718 ~~~L~~~l~~lk~~l~~~~ 736 (1096)
+..++++|+.++..+..++
T Consensus 112 I~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 112 IAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666665554444
No 52
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=6.9e-06 Score=89.67 Aligned_cols=46 Identities=35% Similarity=0.885 Sum_probs=38.4
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCccccccee
Q 001340 1046 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISDRL 1092 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCr~~i~~~i 1092 (1096)
...+|.+|+++..+.-..||||. ||..|...- ..||.||.++...-
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCcc
Confidence 44699999999999999999999 999995332 55999999887543
No 53
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.78 E-value=0.055 Score=67.09 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHH
Q 001340 606 LVEQVKMLAGEIA 618 (1096)
Q Consensus 606 l~eq~k~l~~e~a 618 (1096)
||.|+++|...+-
T Consensus 229 Lr~QvrdLtEkLe 241 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLE 241 (1243)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776553
No 54
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.78 E-value=0.062 Score=72.18 Aligned_cols=86 Identities=27% Similarity=0.371 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHH
Q 001340 641 QIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKK 720 (1096)
Q Consensus 641 Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~ 720 (1096)
.+..+...+.+.+.++..+..++..... +...+......+...+....-+++....+...+++++...+..+..
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 769 (1163)
T COG1196 696 ELRSLEDLLEELRRQLEELERQLEELKR------ELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELES 769 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554432221 1112333344444444444333333333444444444444444444
Q ss_pred HHHHHHHHHHHH
Q 001340 721 LQEKVNLLEQQL 732 (1096)
Q Consensus 721 L~~~l~~lk~~l 732 (1096)
++..+..++..+
T Consensus 770 ~~~~~~~l~~~~ 781 (1163)
T COG1196 770 LEEALAKLKEEI 781 (1163)
T ss_pred HHHHHHHHHHHH
Confidence 444443333333
No 55
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.70 E-value=0.048 Score=74.36 Aligned_cols=114 Identities=19% Similarity=0.214 Sum_probs=65.3
Q ss_pred HHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 001340 698 EIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQL 777 (1096)
Q Consensus 698 e~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L 777 (1096)
+.....+..+..+....+.++.++.+.++++...+..+.. +. ...+..+..+...+..+-..+.+|-++++.|
T Consensus 918 e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~-Ek------~~~e~~~~~l~~e~~~~~e~~~kL~kekk~l 990 (1930)
T KOG0161|consen 918 EEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLEL-EK------NAAENKLKNLEEEINSLDENISKLSKEKKEL 990 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555555555555555422211 00 1233444455555555666677777777777
Q ss_pred HHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001340 778 SEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTK 818 (1096)
Q Consensus 778 ~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~k 818 (1096)
.+.+..|....+..-+++...+.+-...+.++.++-..+.+
T Consensus 991 Ee~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~ 1031 (1930)
T KOG0161|consen 991 EERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLER 1031 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776666666666666666666554443
No 56
>PRK02224 chromosome segregation protein; Provisional
Probab=97.69 E-value=0.026 Score=73.64 Aligned_cols=15 Identities=33% Similarity=0.507 Sum_probs=11.7
Q ss_pred EEeeccCCCCccccc
Q 001340 177 VFAYGVTSSGKTHTM 191 (1096)
Q Consensus 177 IfaYGqTgSGKT~Tm 191 (1096)
.+-+|++|||||..+
T Consensus 26 ~~i~G~Ng~GKStil 40 (880)
T PRK02224 26 TVIHGVNGSGKSSLL 40 (880)
T ss_pred EEEECCCCCCHHHHH
Confidence 345899999998753
No 57
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.69 E-value=0.054 Score=66.22 Aligned_cols=222 Identities=17% Similarity=0.191 Sum_probs=128.2
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHHhhhccCCCC--Cch-----HHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 001340 600 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPD--GSK-----VQIQ--------NLEREIQEKRRQMRILEQRII 664 (1096)
Q Consensus 600 ~d~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~--~~~-----~Q~q--------kL~~elrdKeeei~~L~qki~ 664 (1096)
.|.+-.+-+|-++..+=-+.+.+.-.+|.|.++-+-. +.+ .|-. -|.++++.++++|..|..+..
T Consensus 37 edlk~r~L~aeniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~ 116 (1265)
T KOG0976|consen 37 EDLKKRLLDAENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCL 116 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3555555566677777677777777788888776421 111 1211 288899999999999988885
Q ss_pred HhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHH-------HHHHHHHHHHhhcC
Q 001340 665 ENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQE-------KVNLLEQQLACQNG 737 (1096)
Q Consensus 665 ~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~-------~l~~lk~~l~~~~e 737 (1096)
..-. ....||-.++.+..++++-..++|...++...+.+.|.++..+|..--+ +|..+..+++++++
T Consensus 117 ~lE~------ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~ 190 (1265)
T KOG0976|consen 117 RLEM------EKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLA 190 (1265)
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHH
Confidence 4332 3335677778888888888887777666555555555544444432211 22333333333333
Q ss_pred CCCCCCC-----------CCCCchHHHHH------HHH-------HHHh-------------hHH-HHHHHHHHHHHhHH
Q 001340 738 DKSAGSS-----------GQGTSDEYVDE------LRK-------KVQS-------------QET-ENEKLKLEHVQLSE 779 (1096)
Q Consensus 738 ~~~~~~~-----------~~~e~ee~~~e------l~~-------~~~~-------------Q~~-Eie~lk~e~~~L~E 779 (1096)
+-...+. ...+.++..-+ +.+ ++.. .++ +-+.|+.-.+.+.|
T Consensus 191 e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE 270 (1265)
T KOG0976|consen 191 EANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEE 270 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 0000000 00011111100 001 1111 123 33344556677777
Q ss_pred hhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001340 780 ENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLE 827 (1096)
Q Consensus 780 e~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~ 827 (1096)
...+|+..+..|.+|-+-..++.+-...+|.++-.-++.......+-.
T Consensus 271 ~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqat 318 (1265)
T KOG0976|consen 271 KMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQAT 318 (1265)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 788899999999999999999999888888888776665544444433
No 58
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.68 E-value=0.13 Score=64.32 Aligned_cols=199 Identities=17% Similarity=0.154 Sum_probs=118.4
Q ss_pred CchhhHHHHHHHHHHHHHHHhhHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHH
Q 001340 599 TSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVD 678 (1096)
Q Consensus 599 ~~d~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e 678 (1096)
...+|-.|+.|+.-+-.|=+.....|+ +.+.|.+.-...+....+.|..|...+.....-.... +
T Consensus 263 ~~~EiqKL~qQL~qve~EK~~L~~~L~-----------e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~k----e 327 (717)
T PF09730_consen 263 NLSEIQKLKQQLLQVEREKSSLLSNLQ-----------ESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDK----E 327 (717)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch----h
Confidence 345678899998888877777777776 4556666777777788888888887774333210000 0
Q ss_pred HHH--HHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHH
Q 001340 679 MQQ--TVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDEL 756 (1096)
Q Consensus 679 ~~~--~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el 756 (1096)
.+. .-.+.....++ ...|++-.....+|+.++..+..++..|+.+|+.|+.++...
T Consensus 328 ~~~~~d~~~~~~s~~d-~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~--------------------- 385 (717)
T PF09730_consen 328 QQSAEDSEKERDSHED-GDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNEL--------------------- 385 (717)
T ss_pred hhhhhhcccccccccc-cchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 100 00011111111 233444444577899999999999999999999999988211
Q ss_pred HHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001340 757 RKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 836 (1096)
Q Consensus 757 ~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~ 836 (1096)
. +.+++++..|..+.+.|..++..+....--..+....++.++..+...+..-........+||-..-+.
T Consensus 386 ~----------~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEe 455 (717)
T PF09730_consen 386 E----------ERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEE 455 (717)
T ss_pred H----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 1 233344444444444444444444333333344556666666666666666666666666666666666
Q ss_pred HHHHHHHH
Q 001340 837 MHSRGAAM 844 (1096)
Q Consensus 837 ~~~~e~qi 844 (1096)
+++.-..+
T Consensus 456 LAqLYHHV 463 (717)
T PF09730_consen 456 LAQLYHHV 463 (717)
T ss_pred HHHHHHHH
Confidence 65555555
No 59
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.65 E-value=8.3e-07 Score=108.73 Aligned_cols=250 Identities=21% Similarity=0.232 Sum_probs=148.0
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCeEEEe----eCCCEEEec----CCCCCcceecceecCCCCChhHHHhhhhHHHHHHH
Q 001340 98 SGDSISVTIRFRPLSEREFQRGDEIAWY----ADGDKIVRN----EYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1096)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~~~~~~----~~~~~~~~~----~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~ 169 (1096)
+..+++|+|+|+|........-....+. .-..++..+ .......|.||.+|.....+..++.. ...+++..
T Consensus 303 G~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~ 381 (568)
T COG5059 303 GNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFRE-QSQLSQSS 381 (568)
T ss_pred CCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhhhHHHHH-HHhhhhhh
Confidence 3349999999999874321100000000 000111111 11233468999999998888888874 44467777
Q ss_pred hcCCceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcCCC--CeeEEEEeeeeeecceeeecCCCC-CCcc-
Q 001340 170 MEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPG--REFLLRVSYLEIYNEVINDLLDPT-GQNL- 245 (1096)
Q Consensus 170 l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~~--~~~~v~vS~lEIYnE~i~DLL~~~-~~~l- 245 (1096)
++| +++||++++|+++||.- ...++..-.+..+|..+..... ..+...+-+++||-....+++... +...
T Consensus 382 ~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 455 (568)
T COG5059 382 LSG----IFAYMQSLKKETETLKS--RIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKT 455 (568)
T ss_pred hhh----HHHHHhhhhhhhhcccc--hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH
Confidence 888 99999999999999963 3346666666888877764432 234444455566511112222110 0000
Q ss_pred eEeeC-C-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEE
Q 001340 246 RVRED-A-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLI 323 (1096)
Q Consensus 246 ~ire~-~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lV 323 (1096)
.+... . ....+..++ .......+..... .....+..+.+..|.+++++|.+|............ .. . ++.|
T Consensus 456 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~--~~--~-~n~~ 528 (568)
T COG5059 456 KIHKLNKLRHDLSSLLS-SIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSSTK--EL--S-LNQV 528 (568)
T ss_pred HHHHHHHHHHHHHHhhh-hcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchhhhhH--HH--H-hhhh
Confidence 00000 0 000000000 0001111111121 457788889999999999999999877654322111 11 1 7999
Q ss_pred ecCCCCCcccccchhhhhhhHHHHhhHHHHHHHHHHhh
Q 001340 324 DLAGSESSKTETTGLRRKEGSYINKSLLTLGTVIGKLS 361 (1096)
Q Consensus 324 DLAGSEr~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~ 361 (1096)
||||+|+.-...-|.++++...+|++|..+|.+|.++.
T Consensus 529 ~~~~~e~~~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 529 DLAGSERKVSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hccccccchhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 99999987667788999999999999999999998764
No 60
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.64 E-value=0.28 Score=59.49 Aligned_cols=47 Identities=17% Similarity=0.080 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhhhhh
Q 001340 810 KNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM---QTVNGVNRKYSD 856 (1096)
Q Consensus 810 k~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qi---q~v~~dar~~lq 856 (1096)
|-+.+-|.|+.++..+..+++...+..+...+++. |..+|.+++-||
T Consensus 519 k~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlq 568 (961)
T KOG4673|consen 519 KLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQ 568 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 34566788888888888888888777777777766 778888887665
No 61
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.63 E-value=0.11 Score=70.83 Aligned_cols=132 Identities=16% Similarity=0.152 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHH
Q 001340 645 LEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEK 724 (1096)
Q Consensus 645 L~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~ 724 (1096)
+..++.+.+.+++.|...+..... ..++.+++.++..+..+++...-+++....+...+++++......+..+..+
T Consensus 797 ~~~ei~~l~~qie~l~~~l~~~~~----~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~ 872 (1311)
T TIGR00606 797 FQMELKDVERKIAQQAAKLQGSDL----DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSE 872 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555542222 1133445555555544444443333333333333333333333333332222
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHH
Q 001340 725 VNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKL 791 (1096)
Q Consensus 725 l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl 791 (1096)
...+..++. .....++.+.++...+..+..++.+++.+...|..+..++..+...+
T Consensus 873 klkl~~~l~-----------~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1311)
T TIGR00606 873 KLQIGTNLQ-----------RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL 928 (1311)
T ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 222222221 01223444555555555555555555555555555544444444443
No 62
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.63 E-value=0.047 Score=74.18 Aligned_cols=52 Identities=6% Similarity=0.141 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------hhHHHHHHHHHHHHHHHHhh
Q 001340 889 DDLKLELQARKQREAALEAALAEKEFLEDEYR---------KKVEESKRREEALENDLANM 940 (1096)
Q Consensus 889 ~~~K~e~~a~~erq~aLE~el~~k~~~eeEl~---------~~leE~kkk~~~Le~el~~~ 940 (1096)
..++.++......+..+..++...+.....+. ..+++.+.+...|..++++|
T Consensus 987 e~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~ 1047 (1311)
T TIGR00606 987 EECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQM 1047 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455555555555555555554443333322 55666666677777666655
No 63
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.61 E-value=0.073 Score=67.02 Aligned_cols=88 Identities=18% Similarity=0.258 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHH----HhhhHHHH
Q 001340 644 NLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQL----QNKCSENK 719 (1096)
Q Consensus 644 kL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL----~~a~~e~~ 719 (1096)
.|..++.-+-.+++.++.|+..+-.. .-..+.-++...|.++..+++++.--+.-...+...+..-+ ...+.+..
T Consensus 712 ~l~~ql~l~~~~l~l~~~r~~~~e~~-~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlk 790 (1174)
T KOG0933|consen 712 DLKQQLELKLHELALLEKRLEQNEFH-KLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLK 790 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHH
Confidence 48888888888888888888533211 11113445555666666666665544443333333333333 33344555
Q ss_pred HHHHHHHHHHHHH
Q 001340 720 KLQEKVNLLEQQL 732 (1096)
Q Consensus 720 ~L~~~l~~lk~~l 732 (1096)
+|.++|+.+++.+
T Consensus 791 dl~keik~~k~~~ 803 (1174)
T KOG0933|consen 791 DLEKEIKTAKQRA 803 (1174)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666655
No 64
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.55 E-value=4.7e-05 Score=83.00 Aligned_cols=47 Identities=30% Similarity=0.728 Sum_probs=36.5
Q ss_pred ccccccccccccc--------eEEeCCCCcccchhhhhc----CCCCCCCcccccceeec
Q 001340 1047 SHMCKVCFESPTA--------AILLPCRHFCLCKSCSLA----CSECPICRTKISDRLFA 1094 (1096)
Q Consensus 1047 ~~~C~IC~~~~~~--------~vl~pCgH~~~C~~C~~~----~~~CPiCr~~i~~~i~i 1094 (1096)
...|.||++...+ .++.+|+|. ||..|... ...||+||.++...++.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 4589999996433 467789998 99999432 35699999999987753
No 65
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=2.2e-05 Score=80.18 Aligned_cols=47 Identities=28% Similarity=0.761 Sum_probs=36.4
Q ss_pred cccccccccccceE--EeCCCCcccchhhhhcC----CCCCCCcccccc--eeecc
Q 001340 1048 HMCKVCFESPTAAI--LLPCRHFCLCKSCSLAC----SECPICRTKISD--RLFAF 1095 (1096)
Q Consensus 1048 ~~C~IC~~~~~~~v--l~pCgH~~~C~~C~~~~----~~CPiCr~~i~~--~i~if 1095 (1096)
..|+||++....-+ -.-|||. ||..|.... .+||+||+.|+. +++||
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred cCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 47999999765554 3799999 999996554 669999987764 45555
No 66
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.53 E-value=0.015 Score=63.54 Aligned_cols=50 Identities=36% Similarity=0.421 Sum_probs=42.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 001340 888 PDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDL 937 (1096)
Q Consensus 888 ~~~~K~e~~a~~erq~aLE~el~~k~~~eeEl~~~leE~kkk~~~Le~el 937 (1096)
.+.+..++...++++.+|+.++.+.....++++..+++++.+...++.++
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888999999999999999888888888888888888888888877
No 67
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.53 E-value=0.16 Score=64.24 Aligned_cols=89 Identities=20% Similarity=0.217 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001340 749 SDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEK 828 (1096)
Q Consensus 749 ~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~ 828 (1096)
.+..+..+++++.++..+.++.++++..|+-|...|..+...+-..-.....-.+.++.++.++...|.+.+.+...+.+
T Consensus 792 l~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~ 871 (1174)
T KOG0933|consen 792 LEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQA 871 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 34444555667777777777777777777777777776666665555555555555666666666666666655555555
Q ss_pred HHHHHHHHH
Q 001340 829 ELLAARESM 837 (1096)
Q Consensus 829 Ele~~k~~~ 837 (1096)
++...+...
T Consensus 872 el~~~k~k~ 880 (1174)
T KOG0933|consen 872 ELKDQKAKQ 880 (1174)
T ss_pred HHHHHHHHH
Confidence 555444443
No 68
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.51 E-value=4.7e-05 Score=61.46 Aligned_cols=37 Identities=38% Similarity=1.006 Sum_probs=31.9
Q ss_pred ccccccccc---cceEEeCCCCcccchhhhhcCC----CCCCCcc
Q 001340 1049 MCKVCFESP---TAAILLPCRHFCLCKSCSLACS----ECPICRT 1086 (1096)
Q Consensus 1049 ~C~IC~~~~---~~~vl~pCgH~~~C~~C~~~~~----~CPiCr~ 1086 (1096)
.|.+|+... ...++++|||. ||..|..... .||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 489999877 56889999999 9999987776 7999985
No 69
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.48 E-value=3.6e-05 Score=60.41 Aligned_cols=34 Identities=32% Similarity=1.074 Sum_probs=27.6
Q ss_pred cccccccccce-EEeCCCCcccchhhhhc----CCCCCCC
Q 001340 1050 CKVCFESPTAA-ILLPCRHFCLCKSCSLA----CSECPIC 1084 (1096)
Q Consensus 1050 C~IC~~~~~~~-vl~pCgH~~~C~~C~~~----~~~CPiC 1084 (1096)
|+||++...+. ++.+|||. ||..|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 89999999999 68999999 99999543 3679998
No 70
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.45 E-value=0.25 Score=61.57 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 001340 891 LKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDL 937 (1096)
Q Consensus 891 ~K~e~~a~~erq~aLE~el~~k~~~eeEl~~~leE~kkk~~~Le~el 937 (1096)
+-+|+..+.....-+.+.+...+.-.++|...+++-+..+..|...+
T Consensus 337 ipEd~es~E~m~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~v 383 (617)
T PF15070_consen 337 IPEDLESREAMVEFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQV 383 (617)
T ss_pred cccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33444444444333333333333334455566777777777777776
No 71
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.45 E-value=0.018 Score=72.41 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=26.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 811 NLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQ 845 (1096)
Q Consensus 811 ~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qiq 845 (1096)
.|..+...|+.+..+|+.||..+.+....++..++
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777788888888888888888777776663
No 72
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.41 E-value=0.11 Score=70.58 Aligned_cols=18 Identities=28% Similarity=0.235 Sum_probs=14.6
Q ss_pred eeEEeeccCCCCcccccC
Q 001340 175 GTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm~ 192 (1096)
+++.-+|++|+|||.+|-
T Consensus 28 ~~~~l~G~NGaGKSTll~ 45 (1486)
T PRK04863 28 LVTTLSGGNGAGKSTTMA 45 (1486)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 355677999999999874
No 73
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=5e-05 Score=88.77 Aligned_cols=43 Identities=35% Similarity=0.960 Sum_probs=37.2
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhcC---------CCCCCCcccccc
Q 001340 1047 SHMCKVCFESPTAAILLPCRHFCLCKSCSLAC---------SECPICRTKISD 1090 (1096)
Q Consensus 1047 ~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~---------~~CPiCr~~i~~ 1090 (1096)
+..|+||++.+...+.+-|||. ||..|...+ +.||+|+..|.-
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 5589999999999999999999 999994332 569999999876
No 74
>PRK03918 chromosome segregation protein; Provisional
Probab=97.39 E-value=0.37 Score=62.99 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=11.4
Q ss_pred EeeccCCCCccccc
Q 001340 178 FAYGVTSSGKTHTM 191 (1096)
Q Consensus 178 faYGqTgSGKT~Tm 191 (1096)
+-+|++|||||..|
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 47899999998754
No 75
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=97.36 E-value=0.00057 Score=58.93 Aligned_cols=47 Identities=32% Similarity=0.589 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHH----------hhHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcC
Q 001340 900 QREAALEAALAEKEFLEDEYR----------KKVEESKRREEALENDLANMWVLVAKLKKEVGS 953 (1096)
Q Consensus 900 erq~aLE~el~~k~~~eeEl~----------~~leE~kkk~~~Le~el~~~~~l~~~Lkke~~~ 953 (1096)
++|++|++||++|+.+++||+ ++|+|+.+++..|+.++ +.|+++++.
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei-------~~L~~e~ee 57 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEI-------ERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 589999999999999999997 99999999999999999 999988864
No 76
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.35 E-value=0.16 Score=53.50 Aligned_cols=118 Identities=28% Similarity=0.320 Sum_probs=83.2
Q ss_pred HHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHH
Q 001340 687 MSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETE 766 (1096)
Q Consensus 687 ~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~E 766 (1096)
.+.+++..+-=...+-++..|+..+..++..+..|.+++..|+.++ .+. . .+-.....=..|
T Consensus 7 ~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~------~s~--------Q----qal~~aK~l~eE 68 (193)
T PF14662_consen 7 LSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQL------KSL--------Q----QALQKAKALEEE 68 (193)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH--------H----HHHHHHHHHHHH
Confidence 3333333333334466889999999999999999999999999988 111 0 111111122578
Q ss_pred HHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001340 767 NEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 836 (1096)
Q Consensus 767 ie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~ 836 (1096)
+++||.....|.|++.+|..+...+-. +..-|..+|..|..+|-+|..+.+..+..
T Consensus 69 ledLk~~~~~lEE~~~~L~aq~rqlEk--------------E~q~L~~~i~~Lqeen~kl~~e~~~lk~~ 124 (193)
T PF14662_consen 69 LEDLKTLAKSLEEENRSLLAQARQLEK--------------EQQSLVAEIETLQEENGKLLAERDGLKKR 124 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhHHHHhhhhHHHH
Confidence 899999999999999998888776655 66677778888888888888876666544
No 77
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.33 E-value=0.18 Score=67.96 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHH
Q 001340 921 KKVEESKRREEALENDL 937 (1096)
Q Consensus 921 ~~leE~kkk~~~Le~el 937 (1096)
..+.+++++.+.|+.++
T Consensus 771 ~~I~~l~~~i~~L~~~l 787 (1201)
T PF12128_consen 771 ERIQQLKQEIEQLEKEL 787 (1201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666666666666
No 78
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.31 E-value=0.38 Score=61.33 Aligned_cols=48 Identities=27% Similarity=0.283 Sum_probs=37.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001340 787 QNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 834 (1096)
Q Consensus 787 e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k 834 (1096)
-+.++-++.+.+-.++.++..++..|...|++|..+-++...++..+.
T Consensus 1599 ~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~ 1646 (1758)
T KOG0994|consen 1599 LLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAE 1646 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 345666677788888999999999999999999888777766644333
No 79
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.30 E-value=0.076 Score=64.96 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001340 676 MVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLA 733 (1096)
Q Consensus 676 ~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~ 733 (1096)
..+++.+|..|...|-+...++.-..+....+|++|.+++.+++.+..++..+.+.|.
T Consensus 101 lk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLs 158 (1265)
T KOG0976|consen 101 LKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELS 158 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 3355566666666666666666666667777777777777777777777777777773
No 80
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.30 E-value=0.66 Score=62.94 Aligned_cols=228 Identities=19% Similarity=0.225 Sum_probs=133.9
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCCC-----CC--chHHHHHHHHHHHhh---HHHHHH-H
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDK-SAGSSGQ-----GT--SDEYVDELRKKVQSQ---ETENEK-L 770 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~-~~~~~~~-----~e--~ee~~~el~~~~~~Q---~~Eie~-l 770 (1096)
....|..+|.+....+..|..+.|.++..++..-... ...+.+. .. .+..+.++...+... ..++.. +
T Consensus 580 ~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l 659 (1822)
T KOG4674|consen 580 KIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRAKEKRLRQLENELESYKKEKRENLKKL 659 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777778888888888876664333310 0111111 11 144455554433332 233333 3
Q ss_pred HHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001340 771 KLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGV 850 (1096)
Q Consensus 771 k~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qiq~v~~d 850 (1096)
..+...|..++..+..++.++..+...+++.+.-+...+..+-.+++-|...|.-|..-+...+..+...-..+..++..
T Consensus 660 ~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k 739 (1822)
T KOG4674|consen 660 QEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEK 739 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 56788999999999999999999999999999999999999999999888888888877776666555444444222221
Q ss_pred hhhhhhhhhhhccccccCccccccCcccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----hhHHHH
Q 001340 851 NRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYR----KKVEES 926 (1096)
Q Consensus 851 ar~~lq~l~~~~~e~l~~~~~~~~~~~~~~~~~~w~~~~~~K~e~~a~~erq~aLE~el~~k~~~eeEl~----~~leE~ 926 (1096)
.+ .+.+-....+.+-.-+++ .-..++.+.......+..|...+...+....++. ......
T Consensus 740 ~~-~le~ev~~LKqE~~ll~~---------------t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~ 803 (1822)
T KOG4674|consen 740 LE-KLEAELSNLKQEKLLLKE---------------TEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKC 803 (1822)
T ss_pred HH-HHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 011111111111111111 1223444555555555555555555554444443 444555
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhhcC
Q 001340 927 KRREEALENDLANMWVLVAKLKKEVGS 953 (1096)
Q Consensus 927 kkk~~~Le~el~~~~~l~~~Lkke~~~ 953 (1096)
++++..|++++ ..|++.+..
T Consensus 804 e~~i~eL~~el-------~~lk~klq~ 823 (1822)
T KOG4674|consen 804 ESRIKELEREL-------QKLKKKLQE 823 (1822)
T ss_pred HHHHHHHHHHH-------HHHHHHHHH
Confidence 57777888888 777777654
No 81
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=1.2 Score=57.78 Aligned_cols=238 Identities=18% Similarity=0.233 Sum_probs=101.0
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHhhhc---cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----CCCcc
Q 001340 602 QMDLLVEQVKMLAGEIAFSSSNLKRLVDQS---VNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEA----SMANA 674 (1096)
Q Consensus 602 ~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~---~~~~~~~~~Q~qkL~~elrdKeeei~~L~qki~~s~~~----s~~~~ 674 (1096)
..+.|..++.......-.+...+-.+-|+- ...-....+++++|...++..-..++.|+++|++.-.. .....
T Consensus 779 ~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~ 858 (1293)
T KOG0996|consen 779 SVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKK 858 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHH
Confidence 445555555544444444444431111111 01112334556666666666666666666666443322 11111
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 001340 675 SMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQN--------KCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQ 746 (1096)
Q Consensus 675 ~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~--------a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~ 746 (1096)
..-+++.+|+.++.++++.. +--.|-+....||..+.. -..++..+..+++.+...+....-.-+....+.
T Consensus 859 ~l~~~~~~ie~l~kE~e~~q-e~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i 937 (1293)
T KOG0996|consen 859 RLKELEEQIEELKKEVEELQ-EKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNI 937 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccH
Confidence 22345556666666666543 111122344444444322 233334444444444443311111000111111
Q ss_pred CCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHh
Q 001340 747 GTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEAS-------YAKELASAAAVELKNLAGEVTKL 819 (1096)
Q Consensus 747 ~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~-------~~k~la~aa~~qlk~l~~ev~kL 819 (1096)
.-.+..+.++ ..++++.+.+...|.++-..+......+-.+-. -.+.-...+..+++++-+.++.|
T Consensus 938 ~k~q~~l~~l-------e~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~l 1010 (1293)
T KOG0996|consen 938 AKAQKKLSEL-------EREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENEL 1010 (1293)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222222 234455555555555555555544443333222 23333334455555555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 001340 820 SLQNAKLEKELLAARESMHSRGAAM-QTV 847 (1096)
Q Consensus 820 ~~~n~qL~~Ele~~k~~~~~~e~qi-q~v 847 (1096)
.+...-+.--+++........+..| +|.
T Consensus 1011 k~~rId~~~K~e~~~~~l~e~~~~~~~~~ 1039 (1293)
T KOG0996|consen 1011 KAERIDIENKLEAINGELNEIESKIKQPE 1039 (1293)
T ss_pred HHhhccHHHHHHHHHHHHHHHHhhhhhHH
Confidence 5533334344555555555555444 554
No 82
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.26 E-value=0.33 Score=58.87 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHHHHH
Q 001340 921 KKVEESKRREEALENDL 937 (1096)
Q Consensus 921 ~~leE~kkk~~~Le~el 937 (1096)
..+..++.++..|..||
T Consensus 349 ~~i~~mReec~~l~~El 365 (546)
T KOG0977|consen 349 AEIAKMREECQQLSVEL 365 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666666666655
No 83
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.14 Score=60.60 Aligned_cols=126 Identities=21% Similarity=0.241 Sum_probs=67.8
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCCCCchHHH-HH-------HHHHHHhhHHHHHHHHHH
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNG-DKSAGSSGQGTSDEYV-DE-------LRKKVQSQETENEKLKLE 773 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e-~~~~~~~~~~e~ee~~-~e-------l~~~~~~Q~~Eie~lk~e 773 (1096)
++..|++|+.+.+++|.-++.++|.+++.+.+--- ++..... -.+.|+.+ .| ...++..-..|+.++.++
T Consensus 44 eK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~-g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~e 122 (772)
T KOG0999|consen 44 EKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARD-GEEREESLLQESAAKEEYYLQKILELENELKQLRQE 122 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999998843322 0111000 01122211 11 122333334455555666
Q ss_pred HHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001340 774 HVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 829 (1096)
Q Consensus 774 ~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~E 829 (1096)
...-.+|+.+|....+.+-+.-..--+---.++.++|++-.+=.+|-.+-..|++|
T Consensus 123 l~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEE 178 (772)
T KOG0999|consen 123 LTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEE 178 (772)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666666555332222222334444554444444444444444444
No 84
>PRK11637 AmiB activator; Provisional
Probab=97.22 E-value=0.11 Score=62.32 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHH
Q 001340 643 QNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQ 722 (1096)
Q Consensus 643 qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~ 722 (1096)
..+..++++.+.+|..+.+.+. +++.++..+..+++...-++.....+...++++|...+.++..++
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~-------------~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~ 109 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVR-------------QQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELN 109 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777776664 556667767666666555555555555555555555555555555
Q ss_pred HHHHHHHHHH
Q 001340 723 EKVNLLEQQL 732 (1096)
Q Consensus 723 ~~l~~lk~~l 732 (1096)
++|..++.++
T Consensus 110 ~eI~~~q~~l 119 (428)
T PRK11637 110 ASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHH
Confidence 5555555555
No 85
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.19 E-value=0.57 Score=59.65 Aligned_cols=87 Identities=24% Similarity=0.323 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHH
Q 001340 640 VQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENK 719 (1096)
Q Consensus 640 ~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~ 719 (1096)
..+..+.-++..|+.++..+..++..... ...|+.+.|..|+.+|..+.-+.+...+|+..|+.+|..+...+.
T Consensus 287 ~k~d~~~~eL~rk~~E~~~~qt~l~~~~~------~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~ 360 (775)
T PF10174_consen 287 SKMDRLKLELSRKKSELEALQTRLETLEE------QDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLE 360 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44667888888999899888888854432 223678888888888888888888888888888888777777777
Q ss_pred HHHHHHHHHHHHH
Q 001340 720 KLQEKVNLLEQQL 732 (1096)
Q Consensus 720 ~L~~~l~~lk~~l 732 (1096)
..++.+..+....
T Consensus 361 kk~~~~~~~qeE~ 373 (775)
T PF10174_consen 361 KKQAQIEKLQEEK 373 (775)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666665
No 86
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.16 E-value=0.043 Score=67.86 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=13.0
Q ss_pred eeEEeeccCCCCccccc
Q 001340 175 GTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1096)
+..+-+|++|+|||..+
T Consensus 28 g~~~i~G~NG~GKStll 44 (562)
T PHA02562 28 KKTLITGKNGAGKSTML 44 (562)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35566899999998754
No 87
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.15 E-value=0.25 Score=56.51 Aligned_cols=126 Identities=14% Similarity=0.191 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHH
Q 001340 640 VQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENK 719 (1096)
Q Consensus 640 ~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~ 719 (1096)
.|...+..+++.++.++.+...... ....+-+.-.-||+-.-.|.+..++++.++.-.+.
T Consensus 74 fqlddi~~qlr~~rtel~~a~~~k~--------------------~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~ 133 (499)
T COG4372 74 FQLDDIRPQLRALRTELGTAQGEKR--------------------AAETEREAARSELQKARQEREAVRQELAAARQNLA 133 (499)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666777766655444332 12222233333444444577778888888888888
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHH
Q 001340 720 KLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAK 799 (1096)
Q Consensus 720 ~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k 799 (1096)
..+.++.++..|- .++..+...|.++-.+|..+.+-|-.+...--
T Consensus 134 kAqQ~lar~t~Q~-----------------------------------q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 134 KAQQELARLTKQA-----------------------------------QDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777777776665 45555555556666666665555544333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 001340 800 ELASAAAVELKNLAGEVTKLS 820 (1096)
Q Consensus 800 ~la~aa~~qlk~l~~ev~kL~ 820 (1096)
.-+.+++.+-.+|..+-.+.+
T Consensus 179 ~s~~Qlk~~~~~L~~r~~~ie 199 (499)
T COG4372 179 ASATQLKSQVLDLKLRSAQIE 199 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333555555555555544443
No 88
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.14 E-value=0.00014 Score=58.61 Aligned_cols=36 Identities=36% Similarity=0.973 Sum_probs=28.8
Q ss_pred ccccccccc---cceEEeCCCCcccchhhhhc----CCCCCCCc
Q 001340 1049 MCKVCFESP---TAAILLPCRHFCLCKSCSLA----CSECPICR 1085 (1096)
Q Consensus 1049 ~C~IC~~~~---~~~vl~pCgH~~~C~~C~~~----~~~CPiCr 1085 (1096)
.|.||++.. ..++.+||||. ||..|... ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 599999965 57888999998 99999433 36799997
No 89
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.14 E-value=0.00016 Score=84.26 Aligned_cols=43 Identities=30% Similarity=0.855 Sum_probs=36.7
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001340 1047 SHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISD 1090 (1096)
Q Consensus 1047 ~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCr~~i~~ 1090 (1096)
...|.||++-..+.++.||||. ||..|...+ ..||+|+..+..
T Consensus 26 ~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 26 SLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 3479999999999999999999 999996532 469999998764
No 90
>PHA02926 zinc finger-like protein; Provisional
Probab=97.14 E-value=0.00012 Score=77.53 Aligned_cols=45 Identities=31% Similarity=0.832 Sum_probs=34.2
Q ss_pred cccccccccc---------cceEEeCCCCcccchhhhhcC----------CCCCCCcccccceee
Q 001340 1048 HMCKVCFESP---------TAAILLPCRHFCLCKSCSLAC----------SECPICRTKISDRLF 1093 (1096)
Q Consensus 1048 ~~C~IC~~~~---------~~~vl~pCgH~~~C~~C~~~~----------~~CPiCr~~i~~~i~ 1093 (1096)
.+|.||++.. +-.+|.+|+|. ||..|.... ..||+||..+...++
T Consensus 171 ~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 171 KECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred CCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 3799999853 23688899999 999994322 239999999886654
No 91
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.14 E-value=0.27 Score=62.14 Aligned_cols=190 Identities=23% Similarity=0.296 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc----cCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhH
Q 001340 641 QIQNLEREIQEKRRQMRILEQRIIENGE----ASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCS 716 (1096)
Q Consensus 641 Q~qkL~~elrdKeeei~~L~qki~~s~~----~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~ 716 (1096)
+...|..++.+++.+++.|.|-+..... ..... -++..|..+-+.-.-.|..+..|..-+..|+.++.-
T Consensus 199 nll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yr-------deldalre~aer~d~~ykerlmDs~fykdRveelke 271 (1195)
T KOG4643|consen 199 NLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYR-------DELDALREQAERPDTTYKERLMDSDFYKDRVEELKE 271 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------hHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHh
Confidence 3446777778888888877777643221 11111 122223333333333444455567778888888888
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhh
Q 001340 717 ENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEAS 796 (1096)
Q Consensus 717 e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~ 796 (1096)
-+..|.++-..|+.|| +.++ +++++ ...+..|-.+++++.--..|++-.......|.+||+.|..+.+.|..-..
T Consensus 272 dN~vLleekeMLeeQL-q~lr---arse~-~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~e 346 (1195)
T KOG4643|consen 272 DNRVLLEEKEMLEEQL-QKLR---ARSEG-ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQME 346 (1195)
T ss_pred hhHHHHHHHHHHHHHH-HHHH---hcccc-CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 8888888888888888 3333 34444 45666666777777777777777777788888888888877766654222
Q ss_pred HHHHHHHH-------HHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 797 YAKELASA-------AAVELKNLA-GEVTKLSLQNAKLEKELLAARESMHSRGAAM 844 (1096)
Q Consensus 797 ~~k~la~a-------a~~qlk~l~-~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qi 844 (1096)
.-.-.-.+ +-++.++|- .+.-|+..+|+++-+.++..|.+ .++..|
T Consensus 347 llq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqss--s~Ee~~ 400 (1195)
T KOG4643|consen 347 LLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSS--SYEELI 400 (1195)
T ss_pred HhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhh--hHHHHH
Confidence 11111111 222222221 34556666888888888877765 566544
No 92
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.14 E-value=0.9 Score=61.50 Aligned_cols=65 Identities=22% Similarity=0.199 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 001340 767 NEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 831 (1096)
Q Consensus 767 ie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele 831 (1096)
++.++.+.....++..........+..+-..+......+..++..+..++.++..+..+|..-|.
T Consensus 471 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~ 535 (1201)
T PF12128_consen 471 LEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLD 535 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33334444444444444444444444444445555556666777777777777777777777644
No 93
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.13 E-value=0.2 Score=61.89 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQ 735 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~ 735 (1096)
+...+++++.....++..++.+++.++.++...
T Consensus 214 ~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 214 NIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666666666333
No 94
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.10 E-value=0.84 Score=52.24 Aligned_cols=57 Identities=12% Similarity=0.247 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHH-------HHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001340 677 VDMQQTVTRLMSQCNEKAFELEIK-------SADNRILQEQLQNKCSENKKLQEKVNLLEQQLA 733 (1096)
Q Consensus 677 ~e~~~~v~~L~~~l~e~~~ele~k-------~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~ 733 (1096)
+.+..++..+..++++.--.|+.. ..+...|+..|.+.......|+.++..|+..+.
T Consensus 71 a~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 71 ARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELE 134 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 355666666666666666666644 236777788888888888888888888888774
No 95
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00016 Score=78.25 Aligned_cols=42 Identities=38% Similarity=0.946 Sum_probs=35.7
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhcC------CCCCCCccccc
Q 001340 1047 SHMCKVCFESPTAAILLPCRHFCLCKSCSLAC------SECPICRTKIS 1089 (1096)
Q Consensus 1047 ~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~------~~CPiCr~~i~ 1089 (1096)
..+|.+|++.+-...-.||||. ||..|...+ ..||.||+.+.
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhcc
Confidence 4589999999999999999999 999996552 34999999754
No 96
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.06 E-value=0.12 Score=57.19 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=79.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHh
Q 001340 683 VTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQS 762 (1096)
Q Consensus 683 v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~ 762 (1096)
+..++.++++..-.++...........++..++.++..|..+|..+...+-..-+ ........+.++.
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~ee-------rL~~~~~kL~~~e----- 70 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEE-------RLEEATEKLEEAE----- 70 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC-------CCCHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHH-----
Confidence 4556666666666666666666666777777777777777777777776621111 1112222333332
Q ss_pred hHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001340 763 QETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGA 842 (1096)
Q Consensus 763 Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~ 842 (1096)
...+...+....|......-..+++.|-.....++..+.-+...++.+..++..++....+...-++.+...+...+.
T Consensus 71 --~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~ 148 (237)
T PF00261_consen 71 --KRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEE 148 (237)
T ss_dssp --HHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Confidence 233444444444444444444455555555555555555555555555555555555555555555555555555554
Q ss_pred HH
Q 001340 843 AM 844 (1096)
Q Consensus 843 qi 844 (1096)
.+
T Consensus 149 el 150 (237)
T PF00261_consen 149 EL 150 (237)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 97
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.05 E-value=0.38 Score=55.02 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHH-------HHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 679 MQQTVTRLMSQCNEKAFELEI-------KSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 679 ~~~~v~~L~~~l~e~~~ele~-------k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
...++..|..+++....+-.. ...+...++.++......+..++.++..|+..+
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~l 112 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDL 112 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 445555555555544433322 233555666666666666666666666666655
No 98
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.02 E-value=0.00026 Score=79.65 Aligned_cols=44 Identities=39% Similarity=0.896 Sum_probs=37.6
Q ss_pred ccccccccccceEEeCCCCcccchhhhhc------CCCCCCCcccccceee
Q 001340 1049 MCKVCFESPTAAILLPCRHFCLCKSCSLA------CSECPICRTKISDRLF 1093 (1096)
Q Consensus 1049 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~------~~~CPiCr~~i~~~i~ 1093 (1096)
.|.||-++.+++-+-||||+ +|..|-.. -..||.||-.|.+.=+
T Consensus 371 LCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 89999999999999999999 99999332 2569999999877543
No 99
>PRK01156 chromosome segregation protein; Provisional
Probab=96.99 E-value=2.4 Score=55.74 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=13.1
Q ss_pred eEEeeccCCCCccccc
Q 001340 176 TVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1096)
..+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567899999998765
No 100
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.97 E-value=1.6 Score=55.11 Aligned_cols=63 Identities=17% Similarity=0.221 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcC
Q 001340 891 LKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKLKKEVGS 953 (1096)
Q Consensus 891 ~K~e~~a~~erq~aLE~el~~k~~~eeEl~~~leE~kkk~~~Le~el~~~~~l~~~Lkke~~~ 953 (1096)
+........+++..|++++.....+-.+-...|--+...+..+-.+||+++.-|=.-+.+.+.
T Consensus 410 lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNgeTPn 472 (717)
T PF09730_consen 410 LEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMCNGETPN 472 (717)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCc
Confidence 344444445677788888887777777777778888888889999999999877777766655
No 101
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.97 E-value=1.2 Score=55.63 Aligned_cols=208 Identities=16% Similarity=0.185 Sum_probs=94.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHH----------HHHhHHhh
Q 001340 712 QNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLE----------HVQLSEEN 781 (1096)
Q Consensus 712 ~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e----------~~~L~Ee~ 781 (1096)
..+...+..+.++||.|-..+-.-................++..+......=..|++.+++. ...+.++.
T Consensus 278 ~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL 357 (569)
T PRK04778 278 DEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQL 357 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHH
Confidence 34555555566666666555511111000000011122233333333333334444444444 44444445
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 001340 782 SGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAG 861 (1096)
Q Consensus 782 ~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qiq~v~~dar~~lq~l~~~ 861 (1096)
..+..+...+.........-++.+..+++.+.++++.+..+...+.+.+...+......+..+ +.++.+
T Consensus 358 ~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL-----------~~~~~~ 426 (569)
T PRK04778 358 ESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKL-----------ERYRNK 426 (569)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH
Confidence 555555554444444444445556666666666666666666666555555444433333333 332222
Q ss_pred ccccccCccccccCcccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHhh
Q 001340 862 RKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANM 940 (1096)
Q Consensus 862 ~~e~l~~~~~~~~~~~~~~~~~~w~~~~~~K~e~~a~~erq~aLE~el~~k~~~eeEl~~~leE~kkk~~~Le~el~~~ 940 (1096)
+.+--..++. ..+ -...........+..+.+..|..+|.+..---+.+.+.++++..++..|..+...+
T Consensus 427 L~~ikr~l~k--~~l--------pgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL 495 (569)
T PRK04778 427 LHEIKRYLEK--SNL--------PGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEEL 495 (569)
T ss_pred HHHHHHHHHH--cCC--------CCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221111110 000 11233445555566666666776666522112222346777777777777766333
No 102
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.97 E-value=0.31 Score=59.20 Aligned_cols=84 Identities=26% Similarity=0.309 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHH
Q 001340 645 LEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEK 724 (1096)
Q Consensus 645 L~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~ 724 (1096)
|.++-....+++..++.+|..... ..-+.+.+...+++.-+ -+.-.++++...+=..|..+...+..|+++
T Consensus 187 L~~~~~~~~~q~~~le~ki~~lq~------a~~~t~~el~~~~s~~d---ee~~~k~aev~lim~eLe~aq~ri~~lE~e 257 (629)
T KOG0963|consen 187 LKDEEQNLQEQLEELEKKISSLQS------AIEDTQNELFDLKSKYD---EEVAAKAAEVSLIMTELEDAQQRIVFLERE 257 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhhHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555532211 11123334444444322 345566889999999999999999999999
Q ss_pred HHHHHHHHHhhcC
Q 001340 725 VNLLEQQLACQNG 737 (1096)
Q Consensus 725 l~~lk~~l~~~~e 737 (1096)
+..|+.++...-+
T Consensus 258 ~e~L~~ql~~~N~ 270 (629)
T KOG0963|consen 258 VEQLREQLAKANS 270 (629)
T ss_pred HHHHHHHHHhhhh
Confidence 9999999944333
No 103
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.95 E-value=0.9 Score=58.72 Aligned_cols=136 Identities=19% Similarity=0.196 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHH
Q 001340 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELR 757 (1096)
Q Consensus 678 e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~ 757 (1096)
.+.+.+..+...+++..-+++....+...+..-+..+..++..++.++..|...+...- .+.++-..+++
T Consensus 402 k~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~----------~~l~e~~~~l~ 471 (1293)
T KOG0996|consen 402 KREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEE----------RELDEILDSLK 471 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHh
Confidence 44555555555555555555544445555555556666666777777777766651110 12233333344
Q ss_pred HHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001340 758 KKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQN 823 (1096)
Q Consensus 758 ~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n 823 (1096)
++...-.+|+++++.+..-|..+......+++-+.++...-+.+...+-.....|.+.+..++..+
T Consensus 472 ~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~ 537 (1293)
T KOG0996|consen 472 QETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESL 537 (1293)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555555555544444444444444333333333333333333
No 104
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.95 E-value=1 Score=61.56 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=23.9
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHH
Q 001340 749 SDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 793 (1096)
Q Consensus 749 ~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~ 793 (1096)
.+..+....+++.....++.+++++...+......+..+...+..
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~ 484 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRK 484 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555555555554444
No 105
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.94 E-value=1.7 Score=53.17 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q 001340 601 DQMDLLVEQVKMLAGEIAF 619 (1096)
Q Consensus 601 d~~d~l~eq~k~l~~e~a~ 619 (1096)
-+.|-||-|.|-|++|.|-
T Consensus 423 kERDalr~e~kslk~ela~ 441 (961)
T KOG4673|consen 423 KERDALRREQKSLKKELAA 441 (961)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 3457777777766655554
No 106
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.93 E-value=2 Score=53.81 Aligned_cols=92 Identities=18% Similarity=0.199 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc-chhH--HHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHH
Q 001340 642 IQNLEREIQEKRRQMRILEQRIIENGEASMAN-ASMV--DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSEN 718 (1096)
Q Consensus 642 ~qkL~~elrdKeeei~~L~qki~~s~~~s~~~-~~~~--e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~ 718 (1096)
+....+++.+.+.+|..|...+.......++. .+.. .++.++..|..+++...-+|.....++..|..-..+.+.++
T Consensus 45 k~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL 124 (617)
T PF15070_consen 45 KEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERL 124 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555553332222211 1111 35667777888777777666666667888877667888889
Q ss_pred HHHHHHHHHHHHHHH
Q 001340 719 KKLQEKVNLLEQQLA 733 (1096)
Q Consensus 719 ~~L~~~l~~lk~~l~ 733 (1096)
.+|+.++.+++....
T Consensus 125 ~ELE~~le~~~e~~~ 139 (617)
T PF15070_consen 125 AELEEELERLQEQQE 139 (617)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988888888764
No 107
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.89 E-value=0.00058 Score=52.02 Aligned_cols=34 Identities=41% Similarity=1.174 Sum_probs=29.8
Q ss_pred cccccccccceEEeCCCCcccchhhhh-----cCCCCCCC
Q 001340 1050 CKVCFESPTAAILLPCRHFCLCKSCSL-----ACSECPIC 1084 (1096)
Q Consensus 1050 C~IC~~~~~~~vl~pCgH~~~C~~C~~-----~~~~CPiC 1084 (1096)
|.||++.....+++||+|. ||..|.. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 8899999999999999999 9999964 34569988
No 108
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.87 E-value=0.42 Score=58.85 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcC
Q 001340 921 KKVEESKRREEALENDLANMWVLVAKLKKEVGS 953 (1096)
Q Consensus 921 ~~leE~kkk~~~Le~el~~~~~l~~~Lkke~~~ 953 (1096)
..|++++..+.....|+..+|..|+.|+.++..
T Consensus 288 ~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~ 320 (522)
T PF05701_consen 288 KELEEAKKELEKAKEEASSLRASVESLRSELEK 320 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999854
No 109
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.87 E-value=0.00071 Score=53.43 Aligned_cols=39 Identities=44% Similarity=1.081 Sum_probs=29.8
Q ss_pred ccccccccccce-EEeCCCCcccchhhhhc-----CCCCCCCcccc
Q 001340 1049 MCKVCFESPTAA-ILLPCRHFCLCKSCSLA-----CSECPICRTKI 1088 (1096)
Q Consensus 1049 ~C~IC~~~~~~~-vl~pCgH~~~C~~C~~~-----~~~CPiCr~~i 1088 (1096)
.|.||++..... ++.||||. ||..|... ...||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999988444 44559999 99999542 35699999764
No 110
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.85 E-value=0.49 Score=58.79 Aligned_cols=104 Identities=18% Similarity=0.222 Sum_probs=66.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CCCCchHHHHHHHHH
Q 001340 681 QTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSS-GQGTSDEYVDELRKK 759 (1096)
Q Consensus 681 ~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~-~~~e~ee~~~el~~~ 759 (1096)
.++.+|+.....+..+...+..+.+.++++..+...++..-.+....|...+ | ..... +...-..-|-|+..-
T Consensus 426 ~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~----e--~~~k~~~Rs~Yt~RIlEIv~N 499 (594)
T PF05667_consen 426 EEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKEL----E--KLPKDVNRSAYTRRILEIVKN 499 (594)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H--hCCCCCCHHHHHHHHHHHHHh
Confidence 3444444444444455555556666777777776666666666666666655 1 11111 111223344577788
Q ss_pred HHhhHHHHHHHHHHHHHhHHhhhhHHHHHHH
Q 001340 760 VQSQETENEKLKLEHVQLSEENSGLHVQNQK 790 (1096)
Q Consensus 760 ~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~k 790 (1096)
+.+|.+||++.-.+...|+-|...+..++++
T Consensus 500 I~KQk~eI~KIl~DTr~lQkeiN~l~gkL~R 530 (594)
T PF05667_consen 500 IRKQKEEIEKILSDTRELQKEINSLTGKLDR 530 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999998888754
No 111
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=96.83 E-value=0.00041 Score=75.41 Aligned_cols=41 Identities=24% Similarity=0.647 Sum_probs=36.0
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001340 1049 MCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISD 1090 (1096)
Q Consensus 1049 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCr~~i~~ 1090 (1096)
.|.||.+..+-.++.||||. ||.-|...- +.||+||..+..
T Consensus 27 rC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 27 RCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred Hhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHHh
Confidence 69999999999999999999 999996554 669999987653
No 112
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.83 E-value=0.00054 Score=57.31 Aligned_cols=41 Identities=32% Similarity=0.740 Sum_probs=35.7
Q ss_pred ccccccccccceEEeCCCCcccchhhh--hcCCCCCCCcccccc
Q 001340 1049 MCKVCFESPTAAILLPCRHFCLCKSCS--LACSECPICRTKISD 1090 (1096)
Q Consensus 1049 ~C~IC~~~~~~~vl~pCgH~~~C~~C~--~~~~~CPiCr~~i~~ 1090 (1096)
.|..|......-+++||||+ +|..|. .+..-||+|..+|..
T Consensus 9 ~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 9 PCVFCGFVGTKGTVLPCGHL-ICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred eEEEccccccccccccccce-eeccccChhhccCCCCCCCcccC
Confidence 69999999899999999999 999994 455779999999864
No 113
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.83 E-value=0.66 Score=52.60 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=20.1
Q ss_pred HhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001340 702 ADNRILQEQLQNKCSENKKLQEKVNLLEQ 730 (1096)
Q Consensus 702 ae~~~lqeqL~~a~~e~~~L~~~l~~lk~ 730 (1096)
..+..+.++|..+...+..|+++|..-..
T Consensus 97 ~~~~~le~~L~~~~e~v~qLrHeL~~kde 125 (306)
T PF04849_consen 97 ERNEALEEQLGAALEQVEQLRHELSMKDE 125 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777888888888887754333
No 114
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.82 E-value=1 Score=54.51 Aligned_cols=90 Identities=23% Similarity=0.264 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhh
Q 001340 704 NRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSG 783 (1096)
Q Consensus 704 ~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~ 783 (1096)
...++..+..++.|+..+++++|.|+-++ + .+.-+ .+++++..+|...|..+..+
T Consensus 296 l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I------e-----~Q~iS--------------~~dve~mn~Er~~l~r~l~~ 350 (581)
T KOG0995|consen 296 LEMLKSEIEEKEEEIEKLQKENDELKKQI------E-----LQGIS--------------GEDVERMNLERNKLKRELNK 350 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-----hcCCC--------------HHHHHHHHHHHHHHHHHHHH
Confidence 33445555578999999999999999998 1 11111 34556666777777777777
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001340 784 LHVQNQKLAEEASYAKELASAAAVELKNLAGEVTK 818 (1096)
Q Consensus 784 L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~k 818 (1096)
+..+.+.|..+.-..+..|.....+++.+.-..+.
T Consensus 351 i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~ 385 (581)
T KOG0995|consen 351 IQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNS 385 (581)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776666666665555555444444433
No 115
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=96.81 E-value=0.00034 Score=77.47 Aligned_cols=41 Identities=29% Similarity=0.894 Sum_probs=36.3
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001340 1049 MCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISD 1090 (1096)
Q Consensus 1049 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCr~~i~~ 1090 (1096)
-|.||++=..-.|+.||+|. ||.-|.... +.||.|+.++..
T Consensus 25 RC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 25 RCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccch
Confidence 59999999999999999999 999996543 679999998764
No 116
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=96.79 E-value=0.00058 Score=54.66 Aligned_cols=34 Identities=35% Similarity=0.969 Sum_probs=25.7
Q ss_pred cccccccccceEEeCCCCcccchhhhhcC--------CCCCCC
Q 001340 1050 CKVCFESPTAAILLPCRHFCLCKSCSLAC--------SECPIC 1084 (1096)
Q Consensus 1050 C~IC~~~~~~~vl~pCgH~~~C~~C~~~~--------~~CPiC 1084 (1096)
|+||++-..+-|.++|||. ||..|.... -.||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999 999995433 249988
No 117
>PRK03918 chromosome segregation protein; Provisional
Probab=96.76 E-value=1.3 Score=58.02 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=14.3
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHH
Q 001340 600 SDQMDLLVEQVKMLAGEIAFSSSNLK 625 (1096)
Q Consensus 600 ~d~~d~l~eq~k~l~~e~a~~~~~Lk 625 (1096)
.|..+.+.+..+....++......+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~l~ 182 (880)
T PRK03918 157 LDDYENAYKNLGEVIKEIKRRIERLE 182 (880)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666665555555444443
No 118
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.76 E-value=2 Score=55.53 Aligned_cols=85 Identities=25% Similarity=0.296 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhh
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENS 782 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~ 782 (1096)
..-....||+..+.++...+.+++.+++.+-.+...-...+.+..+.++.+.++......|.+||+.+++....+.-+..
T Consensus 275 ~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~ 354 (1074)
T KOG0250|consen 275 WVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVN 354 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44445566666677777777777777666633333111222222445555555555555556666555544444444433
Q ss_pred hHHHH
Q 001340 783 GLHVQ 787 (1096)
Q Consensus 783 ~L~~e 787 (1096)
.++.+
T Consensus 355 ~~~~~ 359 (1074)
T KOG0250|consen 355 DLKEE 359 (1074)
T ss_pred HHHHH
Confidence 33333
No 119
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.00079 Score=74.94 Aligned_cols=46 Identities=30% Similarity=0.950 Sum_probs=39.2
Q ss_pred cccccccccccccceEEeCCCCcccchhhhh----cCCCCCCCccccccee
Q 001340 1046 NSHMCKVCFESPTAAILLPCRHFCLCKSCSL----ACSECPICRTKISDRL 1092 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~----~~~~CPiCr~~i~~~i 1092 (1096)
....|+||+..+.++||.||+|. .|..|.. .++.|-.|+..+...+
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~~~ 470 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVIDVI 470 (489)
T ss_pred ccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeeehh
Confidence 45589999999999999999999 9999953 4577999999887543
No 120
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.73 E-value=1.1 Score=56.15 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Q 001340 638 SKVQIQNLEREIQEKRRQMRILEQRIIENGEASMAN 673 (1096)
Q Consensus 638 ~~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~ 673 (1096)
+|..++.|+.++.+.+-.++.|..-+...++.++..
T Consensus 330 LQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ 365 (1243)
T KOG0971|consen 330 LQQEVEALKERVDELETDLEILKAEMEEKGSDGQAA 365 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 345677888888888888888888887777666543
No 121
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.71 E-value=0.00058 Score=53.96 Aligned_cols=34 Identities=38% Similarity=1.147 Sum_probs=29.0
Q ss_pred cccccccccceE-EeCCCCcccchhhhhc------CCCCCCC
Q 001340 1050 CKVCFESPTAAI-LLPCRHFCLCKSCSLA------CSECPIC 1084 (1096)
Q Consensus 1050 C~IC~~~~~~~v-l~pCgH~~~C~~C~~~------~~~CPiC 1084 (1096)
|.||++.....+ ++||||. ||..|... ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 899999999988 9999999 99999433 3559988
No 122
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.70 E-value=3.1 Score=52.62 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHhhhc
Q 001340 601 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQS 631 (1096)
Q Consensus 601 d~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~ 631 (1096)
|+.|+.- ..+..|++.-...|..+.++|
T Consensus 329 d~~~~~~---~~~~~e~~~~~~~l~~~~~ea 356 (980)
T KOG0980|consen 329 DPRELQI---EQLSREVAQLKAQLENLKEEA 356 (980)
T ss_pred ChhhHHH---HHHHHHHHHHhhhhhhHHHHH
Confidence 6555444 457788888777777666655
No 123
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.67 E-value=0.38 Score=53.16 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=52.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001340 755 ELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 834 (1096)
Q Consensus 755 el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k 834 (1096)
.+...+..-...+..|+.+...+......|...-++++.......+.+..+..+++....+++..+....+|..++....
T Consensus 131 ~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le 210 (237)
T PF00261_consen 131 RAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLE 210 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455666667777777777777777777766665556666666666666665555555555555555555555
Q ss_pred HHHHHHHHH
Q 001340 835 ESMHSRGAA 843 (1096)
Q Consensus 835 ~~~~~~e~q 843 (1096)
..+..|...
T Consensus 211 ~eL~~~k~~ 219 (237)
T PF00261_consen 211 DELEKEKEK 219 (237)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555433
No 124
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.62 E-value=0.6 Score=60.11 Aligned_cols=189 Identities=22% Similarity=0.311 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCcchhHHHHHHHHHHHHhhhhhhHHHHHHH-------HhHHHHHHHH
Q 001340 640 VQIQNLEREIQEKRRQMRILEQRIIENGEA-SMANASMVDMQQTVTRLMSQCNEKAFELEIKS-------ADNRILQEQL 711 (1096)
Q Consensus 640 ~Q~qkL~~elrdKeeei~~L~qki~~s~~~-s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~-------ae~~~lqeqL 711 (1096)
-|...+...++.+++.+..+.+++...-.. ........+.+.++.+++.+-+...=|++..- .+...++++.
T Consensus 281 ~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~ 360 (1074)
T KOG0250|consen 281 RQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEI 360 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567777888888888888877332211 11111233556666666666665555555431 2555667777
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHH
Q 001340 712 QNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKL 791 (1096)
Q Consensus 712 ~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl 791 (1096)
++++..+.++..++|.++.++...-+ +...++...+.+-..+++.|++++..|.+....|..+.+.+
T Consensus 361 ~~~~n~i~~~k~~~d~l~k~I~~~~~-------------~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 361 REIENSIRKLKKEVDRLEKQIADLEK-------------QTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888843332 11234444444555667778888888888888888888888
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 792 AEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 844 (1096)
Q Consensus 792 ~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qi 844 (1096)
.++...-.+-....+..+.+|...+..-+.+...|.. .+...++.+...+
T Consensus 428 ~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~---~k~dkvs~FG~~m 477 (1074)
T KOG0250|consen 428 KEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK---TKTDKVSAFGPNM 477 (1074)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccchhhhcchhh
Confidence 7765555555555555555555544433333333322 2344455555544
No 125
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.60 E-value=4 Score=52.70 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhccccccc
Q 001340 405 THNTLKFASRAKRVEIYA 422 (1096)
Q Consensus 405 TlsTLrfa~rak~I~~~~ 422 (1096)
+..|=+|-.||+.|+...
T Consensus 1177 ~~rt~rl~~~A~~l~~tG 1194 (1758)
T KOG0994|consen 1177 ALRTHRLINRAKELKQTG 1194 (1758)
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 455667778888877544
No 126
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.59 E-value=0.62 Score=58.97 Aligned_cols=72 Identities=21% Similarity=0.152 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 766 ENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 844 (1096)
Q Consensus 766 Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qi 844 (1096)
++|.|--....|+|.+..|+. .|+.|--..-|||+|+.. -..+++-++.+..+-+.|+..+|..+++..+-+
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~---sLsaEtriKldLfsaLg~----akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLEN---SLSAETRIKLDLFSALGD----AKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVM 659 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 566666666677777776664 455666677788888542 223444555566666777778887777665433
No 127
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=96.55 E-value=0.0012 Score=56.89 Aligned_cols=40 Identities=13% Similarity=0.325 Sum_probs=34.8
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcC----CCCCCCccccc
Q 001340 1049 MCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKIS 1089 (1096)
Q Consensus 1049 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCr~~i~ 1089 (1096)
.|.||.+-..+.|+.||||. ||..|.... ..||+|+.++.
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCC
Confidence 69999999999999999998 999995433 56999999874
No 128
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.49 E-value=1.4 Score=51.92 Aligned_cols=68 Identities=21% Similarity=0.383 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHH
Q 001340 608 EQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLM 687 (1096)
Q Consensus 608 eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~ 687 (1096)
+|++....+++.....+. ..+.+.++|.++|++.+.+|..+...+..+.. +..++.+.|..+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~-----------~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~------~l~~~~~~I~~~~ 100 (420)
T COG4942 38 KQLKQIQKEIAALEKKIR-----------EQQDQRAKLEKQLKSLETEIASLEAQLIETAD------DLKKLRKQIADLN 100 (420)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHhhHHHHH
Confidence 567777888888777776 12344568999999999999888888864432 3334444555444
Q ss_pred Hhhhh
Q 001340 688 SQCNE 692 (1096)
Q Consensus 688 ~~l~e 692 (1096)
..++.
T Consensus 101 ~~l~~ 105 (420)
T COG4942 101 ARLNA 105 (420)
T ss_pred HHHHH
Confidence 44443
No 129
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.46 E-value=1.6 Score=56.78 Aligned_cols=79 Identities=27% Similarity=0.285 Sum_probs=45.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001340 757 RKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARE 835 (1096)
Q Consensus 757 ~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~ 835 (1096)
...++++.++...+......|++.+.+|..++.++..+....+..-........++-.++.-|+..+..+..++...++
T Consensus 573 ~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 573 SKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred hHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 3344444445556666666666666666666666666665555555555555555555555555555555554444443
No 130
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.42 E-value=1.4 Score=55.42 Aligned_cols=162 Identities=19% Similarity=0.257 Sum_probs=83.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhh
Q 001340 635 PDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK 714 (1096)
Q Consensus 635 ~~~~~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a 714 (1096)
++....|++.|.+++...+-+++.+...-.. -+..++.++..+..++++--++.+....|.+.|+++|...
T Consensus 328 kd~~~~~~~~~~~e~~~~~~~l~~~~~ear~---------~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql 398 (980)
T KOG0980|consen 328 KDPRELQIEQLSREVAQLKAQLENLKEEARR---------RIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQL 398 (980)
T ss_pred CChhhHHHHHHHHHHHHHhhhhhhHHHHHHH---------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567778888888877777644332211 1113445555555555544333333333333333332222
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHH
Q 001340 715 CSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEE 794 (1096)
Q Consensus 715 ~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e 794 (1096)
. +.+.++ .++ .-.+.++..+.+.....++++|..+..|..++..|..++.....
T Consensus 399 ~-----------a~r~q~------eka--------~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~k- 452 (980)
T KOG0980|consen 399 L-----------ASRTQL------EKA--------QVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQK- 452 (980)
T ss_pred H-----------HHHHHH------HHH--------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 2 222222 000 01134555566667777888888888888887777776654433
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 795 ASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 844 (1096)
Q Consensus 795 ~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qi 844 (1096)
+++++-++ +.+.+.+|..|...++..+.....|++..
T Consensus 453 ---------Qle~~~~s----~~~~~~~~~~L~d~le~~~~~~~~~~~K~ 489 (980)
T KOG0980|consen 453 ---------QLESAEQS----IDDVEEENTNLNDQLEELQRAAGRAETKT 489 (980)
T ss_pred ---------HHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222222 22455566666666666666666666433
No 131
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.41 E-value=3.7 Score=50.17 Aligned_cols=19 Identities=11% Similarity=0.244 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhHHHHH
Q 001340 607 VEQVKMLAGEIAFSSSNLK 625 (1096)
Q Consensus 607 ~eq~k~l~~e~a~~~~~Lk 625 (1096)
++.+..|.+-+|..-.-+.
T Consensus 41 K~El~~LNDRLA~YIekVR 59 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVR 59 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455666665555444
No 132
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.30 E-value=1.8 Score=57.41 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001340 808 ELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNG 849 (1096)
Q Consensus 808 qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qiq~v~~ 849 (1096)
+|....++++.+..++.+.+..+.........-+.|++|+..
T Consensus 273 ~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~ 314 (1109)
T PRK10929 273 ALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGV 314 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444455588888888988888888888888888899988876
No 133
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=96.28 E-value=0.0014 Score=52.79 Aligned_cols=27 Identities=37% Similarity=0.987 Sum_probs=16.9
Q ss_pred cccccccccc----eEEeCCCCcccchhhhhcC
Q 001340 1050 CKVCFESPTA----AILLPCRHFCLCKSCSLAC 1078 (1096)
Q Consensus 1050 C~IC~~~~~~----~vl~pCgH~~~C~~C~~~~ 1078 (1096)
|+||++ ..+ .+++||||. ||..|...+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHH
Confidence 899999 777 788999999 999995544
No 134
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.24 E-value=3.1 Score=50.86 Aligned_cols=117 Identities=19% Similarity=0.132 Sum_probs=66.1
Q ss_pred HhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhh
Q 001340 702 ADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEEN 781 (1096)
Q Consensus 702 ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~ 781 (1096)
.++..+++|+..++.-+..|+..+..-..++....- -...+.... .+.+.-=..++++-.+....|+.++
T Consensus 189 ~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s------~~dee~~~k----~aev~lim~eLe~aq~ri~~lE~e~ 258 (629)
T KOG0963|consen 189 DEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKS------KYDEEVAAK----AAEVSLIMTELEDAQQRIVFLEREV 258 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH------hhhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777776666655555522111 000111111 2222233457788888889999999
Q ss_pred hhHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001340 782 SGLHVQNQKLAEEASYA--KELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 836 (1096)
Q Consensus 782 ~~L~~e~~kl~~e~~~~--k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~ 836 (1096)
..|..+..+.+.+.... .++.+. ..-++.....|++|..+++..+.+
T Consensus 259 e~L~~ql~~~N~~~~~~~~~~i~~~--------~~~L~~kd~~i~~L~~di~~~~~S 307 (629)
T KOG0963|consen 259 EQLREQLAKANSSKKLAKIDDIDAL--------GSVLNQKDSEIAQLSNDIERLEAS 307 (629)
T ss_pred HHHHHHHHhhhhhhhhccCCchHHH--------HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999988888755554 222222 122333555566666665555544
No 135
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.23 E-value=4.9 Score=49.65 Aligned_cols=135 Identities=23% Similarity=0.213 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHH
Q 001340 679 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRK 758 (1096)
Q Consensus 679 ~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~ 758 (1096)
++..+..++.+|++....|.....|...|+.-......++.....++..++++. ......+..|+.
T Consensus 279 ~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e--------------~~a~~~v~~L~~ 344 (522)
T PF05701_consen 279 LQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKERE--------------KEASSEVSSLEA 344 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhHHhhHHH
Confidence 344455555555555444444444444444443333333333333333333333 112223333444
Q ss_pred HHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001340 759 KVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLE 827 (1096)
Q Consensus 759 ~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~ 827 (1096)
.+..=..+++..+.+-....+....|...++++..|+..++..+..+..++..+..++........-..
T Consensus 345 eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E 413 (522)
T PF05701_consen 345 ELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAE 413 (522)
T ss_pred HHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444445555666777777777777766666666666555555555544443333
No 136
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.13 E-value=1.7 Score=51.19 Aligned_cols=87 Identities=25% Similarity=0.285 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhh
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENS 782 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~ 782 (1096)
.+..|+.....++.++..|+.++|.|+-|+ .+ +.-+ .++.+..-+|+..|.-+..
T Consensus 331 ~l~kl~~eie~kEeei~~L~~~~d~L~~q~------~k-----q~Is--------------~e~fe~mn~Ere~L~reL~ 385 (622)
T COG5185 331 KLEKLKSEIELKEEEIKALQSNIDELHKQL------RK-----QGIS--------------TEQFELMNQEREKLTRELD 385 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH------Hh-----cCCC--------------HHHHHHHHHHHHHHHHHHH
Confidence 556677777788888888888888888888 11 1112 2344555666677777777
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001340 783 GLHVQNQKLAEEASYAKELASAAAVELKNLAG 814 (1096)
Q Consensus 783 ~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ 814 (1096)
+...+.++|..+...++-.|-+....++++..
T Consensus 386 ~i~~~~~~L~k~V~~~~leaq~~~~slek~~~ 417 (622)
T COG5185 386 KINIQSDKLTKSVKSRKLEAQGIFKSLEKTLR 417 (622)
T ss_pred HhcchHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 77777777777666666555555444433333
No 137
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.11 E-value=5.7 Score=49.31 Aligned_cols=73 Identities=23% Similarity=0.209 Sum_probs=44.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------
Q 001340 754 DELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKL------- 826 (1096)
Q Consensus 754 ~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL------- 826 (1096)
..++.....|+.|.+.+++.+..+.++...+..-+..... |-+|+++|+..+.++
T Consensus 240 e~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~------------------LqeE~e~Lqskl~~~~~l~~~~ 301 (716)
T KOG4593|consen 240 EAINKNMKDQLQELEELERALSQLREELATLRENRETVGL------------------LQEELEGLQSKLGRLEKLQSTL 301 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666778888888888888888887766655443322 333444444444333
Q ss_pred ---HHHHHHHHHHHHHHHHHH
Q 001340 827 ---EKELLAARESMHSRGAAM 844 (1096)
Q Consensus 827 ---~~Ele~~k~~~~~~e~qi 844 (1096)
+-|-...+.....|+.-.
T Consensus 302 ~~LELeN~~l~tkL~rwE~~~ 322 (716)
T KOG4593|consen 302 LGLELENEDLLTKLQRWERAD 322 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 334456677777787654
No 138
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.08 E-value=1.7 Score=55.32 Aligned_cols=56 Identities=21% Similarity=0.314 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 001340 764 ETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKL 819 (1096)
Q Consensus 764 ~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL 819 (1096)
..++++++.++..|....+.|..+.+.+..+-+..-..-..++.+.++|.++++--
T Consensus 264 ~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n 319 (1200)
T KOG0964|consen 264 EDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGN 319 (1200)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhh
Confidence 44555555555555555555555555554444444444445566666666666543
No 139
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.07 E-value=0.0016 Score=82.85 Aligned_cols=123 Identities=20% Similarity=0.284 Sum_probs=0.0
Q ss_pred CchhhHHHHH---HHHHHHHHHHhhHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcch
Q 001340 599 TSDQMDLLVE---QVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANAS 675 (1096)
Q Consensus 599 ~~d~~d~l~e---q~k~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~ 675 (1096)
--|++|.||+ ++..+..++..++.-|. +.++.+.|++.|..+...--+....|+..+..+.... ..
T Consensus 296 LrDElD~lR~~a~r~~klE~~ve~YKkKLe--------d~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~---~q 364 (713)
T PF05622_consen 296 LRDELDELREKADRADKLENEVEKYKKKLE--------DLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALK---SQ 364 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HH
Confidence 3477777765 33444455555554443 2334445555555554444444444444443222111 12
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 676 MVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 676 ~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
+-.+.++|..|...+.+..-+.+....++..|++++..+..+...|..+.+.|+...
T Consensus 365 le~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~ 421 (713)
T PF05622_consen 365 LEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETN 421 (713)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777777777776666666677888899999888888888888888887755
No 140
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.05 E-value=0.0032 Score=70.02 Aligned_cols=46 Identities=30% Similarity=0.822 Sum_probs=38.3
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcC------CCCCCCccccccee
Q 001340 1046 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC------SECPICRTKISDRL 1092 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~------~~CPiCr~~i~~~i 1092 (1096)
....|.||-..-+-..++||+|. +|..|+.+. +.||+||..-..++
T Consensus 60 en~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 60 ENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred ccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEE
Confidence 34479999999999999999999 999998775 56999998655443
No 141
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=0.7 Score=57.47 Aligned_cols=29 Identities=38% Similarity=0.547 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 704 NRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 704 ~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.....+.|+.+..++..|..+.-.|..++
T Consensus 732 ~~t~~eel~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 732 SKTQNEELNAALSENKKLENDQELLTKEL 760 (970)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666665555555555
No 142
>PRK11281 hypothetical protein; Provisional
Probab=96.04 E-value=3.7 Score=54.73 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001340 806 AVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNG 849 (1096)
Q Consensus 806 ~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qiq~v~~ 849 (1096)
..+|....++++.+..++.+.+..++..+.....-+.|++|+..
T Consensus 291 s~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~ 334 (1113)
T PRK11281 291 SQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKG 334 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33555555688888888888888888888888778888888776
No 143
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.02 E-value=2.6 Score=44.66 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=10.9
Q ss_pred HHHhhHHHHHHHHHHHHHHH
Q 001340 918 EYRKKVEESKRREEALENDL 937 (1096)
Q Consensus 918 El~~~leE~kkk~~~Le~el 937 (1096)
|++.-.+|++.....|+.++
T Consensus 169 Ey~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 169 EYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666655
No 144
>PRK09039 hypothetical protein; Validated
Probab=95.99 E-value=0.43 Score=55.61 Aligned_cols=145 Identities=17% Similarity=0.197 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHH
Q 001340 644 NLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQE 723 (1096)
Q Consensus 644 kL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~ 723 (1096)
=|+.++..++++++.|..+|...- +. |.........++++|.+...++..+++
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~L~-------e~--------------------L~le~~~~~~l~~~l~~l~~~l~~a~~ 95 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAELA-------DL--------------------LSLERQGNQDLQDSVANLRASLSAAEA 95 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH-------HH--------------------HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 377888888888888888875310 01 111122223333333333334444444
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHH
Q 001340 724 KVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELAS 803 (1096)
Q Consensus 724 ~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~ 803 (1096)
.-..|+.....+- +...+.+.....+.+.+..++.++.+...++..|..+...|+.++..|..+-..++..-.
T Consensus 96 ~r~~Le~~~~~~~-------~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~ 168 (343)
T PRK09039 96 ERSRLQALLAELA-------GAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDR 168 (343)
T ss_pred HHHHHHHHHhhhh-------hhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444431110 111233444444555555666666666667777777777777777777776666666667
Q ss_pred HHHHHHHHHHHHHHHhhHH
Q 001340 804 AAAVELKNLAGEVTKLSLQ 822 (1096)
Q Consensus 804 aa~~qlk~l~~ev~kL~~~ 822 (1096)
.+..++++|-.++++..++
T Consensus 169 ~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 169 ESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666544
No 145
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.95 E-value=6.1 Score=50.56 Aligned_cols=193 Identities=16% Similarity=0.197 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCcch-hHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHH
Q 001340 645 LEREIQEKRRQMRILEQRIIENGEASMANAS-MVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQE 723 (1096)
Q Consensus 645 L~~elrdKeeei~~L~qki~~s~~~s~~~~~-~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~ 723 (1096)
-.+++++...+|+.|+.........+....+ ..+.+-.+..+..++.+..-.|..+..|+..++.+-...--.-..|.=
T Consensus 228 YdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel 307 (1200)
T KOG0964|consen 228 YDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLEL 307 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 5688899999999998887655544332111 112334556677777777777777777777777776666666666777
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHH---hhHHH-
Q 001340 724 KVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEE---ASYAK- 799 (1096)
Q Consensus 724 ~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e---~~~~k- 799 (1096)
++++|.+++ +...... ......+.++..+...-+.|+.+.+-.+..|.++-..+..++-.|... -+...
T Consensus 308 ~~kdlq~~i------~~n~q~r-~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqg 380 (1200)
T KOG0964|consen 308 KIKDLQDQI------TGNEQQR-NLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQG 380 (1200)
T ss_pred hhHHHHHHh------hhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777777777 1111111 112223344444555556667777777777777777777666555441 12222
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 800 ---------ELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 844 (1096)
Q Consensus 800 ---------~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qi 844 (1096)
++-+-+..|++.|..-++....+-..|..|++..+.....-..+|
T Consensus 381 r~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i 434 (1200)
T KOG0964|consen 381 RYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEI 434 (1200)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222224555555555555554455555555555444443333333
No 146
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=95.92 E-value=1.2 Score=54.65 Aligned_cols=215 Identities=17% Similarity=0.215 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHH
Q 001340 639 KVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSEN 718 (1096)
Q Consensus 639 ~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~ 718 (1096)
+.+++...++-.+-+..|.+++++....-+.+....+. ..+|..+|.++.-.+.-..--+..||++|.-++-+.
T Consensus 55 q~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~------ndklE~~Lankda~lrq~eekn~slqerLelaE~~l 128 (916)
T KOG0249|consen 55 QRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDL------NDKLENELANKDADLRQNEEKNRSLQERLELAEPKL 128 (916)
T ss_pred hhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccc------hHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhh
Confidence 36677788888889999999999997665544332222 567777777776666665556677777776555443
Q ss_pred HHHHH--HHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHH----HHHHH
Q 001340 719 KKLQE--KVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQ----NQKLA 792 (1096)
Q Consensus 719 ~~L~~--~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e----~~kl~ 792 (1096)
...-+ ++-.++..+.+..+.-.+...+....++.+..+...++..-+|+.+..+....=+|-+..|... ++-..
T Consensus 129 ~qs~rae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhl 208 (916)
T KOG0249|consen 129 QQSLRAETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHL 208 (916)
T ss_pred HhHHhhhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHH
Confidence 22111 1111222222222200011111122333333333222222333334333333333333333222 33334
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhhhhhhhhhh
Q 001340 793 EEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM----QTVNGVNRKYSDGMK 859 (1096)
Q Consensus 793 ~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qi----q~v~~dar~~lq~l~ 859 (1096)
.|-..+++.++.+..+++-+.+.+..+.....+|..+.+.++..+.+.+.+. +-..++.+.|.+..+
T Consensus 209 kermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~~~mrd~~~~~~e~~~ 279 (916)
T KOG0249|consen 209 KERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKEQELRDHLRTYAERRR 279 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHH
Confidence 4555666777777777777777777777777777666666666666555433 334445555555433
No 147
>PRK11281 hypothetical protein; Provisional
Probab=95.90 E-value=9.1 Score=51.18 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=43.0
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 674 ASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 674 ~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.+..++++.+..+..+|.+..-.|..-++....++.+...+..+..+.+..++..+.++
T Consensus 121 ~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L 179 (1113)
T PRK11281 121 LSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLL 179 (1113)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888887777776666666666666777777777777777777777777777
No 148
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=95.86 E-value=1.1 Score=48.00 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=34.4
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 682 TVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 682 ~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
+|+=|+.+|+|.-.++-.|..|+-.|+-||.+..+........+..|+..+
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~ 61 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSL 61 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 466667777776666666666777777777766666666666666666655
No 149
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.82 E-value=2.4 Score=52.82 Aligned_cols=59 Identities=20% Similarity=0.165 Sum_probs=29.1
Q ss_pred HHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001340 774 HVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLA 832 (1096)
Q Consensus 774 ~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~ 832 (1096)
...|.++.+.|+.....-..+..-..+-.+.+..+++.+..++..-+....+|..+++.
T Consensus 421 R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 421 RAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEK 479 (594)
T ss_pred HhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555555554444334333333444444455555555555555555555555443
No 150
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.78 E-value=2 Score=48.85 Aligned_cols=121 Identities=19% Similarity=0.277 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhhh---ccCC---CCC-----------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 603 MDLLVEQVKMLAGEIAFSSSNLKRLVDQ---SVND---PDG-----------SKVQIQNLEREIQEKRRQMRILEQRIIE 665 (1096)
Q Consensus 603 ~d~l~eq~k~l~~e~a~~~~~Lk~l~e~---~~~~---~~~-----------~~~Q~qkL~~elrdKeeei~~L~qki~~ 665 (1096)
+....+++..|.-|+......|+=++.- +... +.+ ..++...|.++++..+++-..|..-...
T Consensus 106 L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~ 185 (306)
T PF04849_consen 106 LGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQ 185 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666667777777777777766621 1111 111 1256778999999999888777766543
Q ss_pred hcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 666 NGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 666 s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
....+. ....+-..|...+ .=+|...++.+..|++.|..+..++...+++|..|..++
T Consensus 186 L~~et~------~~EekEqqLv~dc---v~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqi 243 (306)
T PF04849_consen 186 LKTETD------TYEEKEQQLVLDC---VKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQI 243 (306)
T ss_pred hhHHHh------hccHHHHHHHHHH---HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332111 1111111121111 112223344555555555555555555555555555555
No 151
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.75 E-value=7.2 Score=48.62 Aligned_cols=305 Identities=14% Similarity=0.149 Sum_probs=149.1
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHH
Q 001340 603 MDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQT 682 (1096)
Q Consensus 603 ~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~ 682 (1096)
++.|.++++.+-..|..-..... .. ||..-+-...+++.++.+.++.|+.+-.-+......-|. -..+++.-
T Consensus 163 ~~~Le~~L~~ie~~F~~f~~lt~----~G--D~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~--ql~eL~~g 234 (560)
T PF06160_consen 163 IEELEKQLENIEEEFSEFEELTE----NG--DYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPD--QLEELKEG 234 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----CC--CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH--HHHHHHHH
Confidence 45666777777777666444332 11 222222334455555555555554444333222211111 22244444
Q ss_pred HHHHHHh---hhhhhHHHHHHHH--hHHHHHH-----HHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHH
Q 001340 683 VTRLMSQ---CNEKAFELEIKSA--DNRILQE-----QLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEY 752 (1096)
Q Consensus 683 v~~L~~~---l~e~~~ele~k~a--e~~~lqe-----qL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~ 752 (1096)
+.++..+ +....+.-++... ....+.. .|.+++..+..+..+|+.|-..+-.-.+.............++
T Consensus 235 y~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~ 314 (560)
T PF06160_consen 235 YREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEY 314 (560)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4443332 2222232222211 1111111 3456666677777777777777622222110001111122233
Q ss_pred HHHHHHHHHhhHHHHHHHHH----------HHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001340 753 VDELRKKVQSQETENEKLKL----------EHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQ 822 (1096)
Q Consensus 753 ~~el~~~~~~Q~~Eie~lk~----------e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~ 822 (1096)
+..+......=..|++.+++ ....|.++...+....+.+.......+-.++.+...++.+.+.++.++.+
T Consensus 315 l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~ 394 (560)
T PF06160_consen 315 LEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEE 394 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333445555532 34455556666666666666666666777777888888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhh--hhhhhhhhhhhhccccccCccccccCcccccccCCCCCchhHHHHHHHHH
Q 001340 823 NAKLEKELLAARESMHSRGAAM-QTVNG--VNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARK 899 (1096)
Q Consensus 823 n~qL~~Ele~~k~~~~~~e~qi-q~v~~--dar~~lq~l~~~~~e~l~~~~~~~~~~~~~~~~~~w~~~~~~K~e~~a~~ 899 (1096)
-..+.+.+..++..-..-+.++ .+... ..+++++ .+ .++ .-............
T Consensus 395 q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le-----------k~-----nLP--------Glp~~y~~~~~~~~ 450 (560)
T PF06160_consen 395 QEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE-----------KS-----NLP--------GLPEDYLDYFFDVS 450 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------Hc-----CCC--------CCCHHHHHHHHHHH
Confidence 7777776665554443333333 11111 2222222 11 111 12233445555566
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHh
Q 001340 900 QREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLAN 939 (1096)
Q Consensus 900 erq~aLE~el~~k~~~eeEl~~~leE~kkk~~~Le~el~~ 939 (1096)
+.+..|..++.+..---+++.+.++++..-...|.....+
T Consensus 451 ~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~ 490 (560)
T PF06160_consen 451 DEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEE 490 (560)
T ss_pred HHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777776665544455556677777777777666533
No 152
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.75 E-value=9.6 Score=49.04 Aligned_cols=49 Identities=18% Similarity=0.059 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001340 799 KELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTV 847 (1096)
Q Consensus 799 k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qiq~v 847 (1096)
-.++.-.+.|++.+....+++...-..|++.+-...++.++.-.+||..
T Consensus 508 ~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~L 556 (1195)
T KOG4643|consen 508 HALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSL 556 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3355556777777777777777777888888888888888887777544
No 153
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=95.73 E-value=0.0057 Score=52.98 Aligned_cols=39 Identities=41% Similarity=1.042 Sum_probs=20.7
Q ss_pred ccccccccccce-EEeCCCCcccchhhhhcC--CCCCCCcccc
Q 001340 1049 MCKVCFESPTAA-ILLPCRHFCLCKSCSLAC--SECPICRTKI 1088 (1096)
Q Consensus 1049 ~C~IC~~~~~~~-vl~pCgH~~~C~~C~~~~--~~CPiCr~~i 1088 (1096)
.|.+|.+-.+.. .++-|.|. ||..|...+ ..||+|+.+-
T Consensus 9 rCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 9 RCSICFDILKEPVCLGGCEHI-FCSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp S-SSS-S--SS-B---SSS---B-TTTGGGGTTTB-SSS--B-
T ss_pred CCcHHHHHhcCCceeccCccH-HHHHHhHHhcCCCCCCcCChH
Confidence 699999987776 47999999 999997666 6699999874
No 154
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.003 Score=70.16 Aligned_cols=39 Identities=36% Similarity=0.997 Sum_probs=33.6
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcc
Q 001340 1047 SHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRT 1086 (1096)
Q Consensus 1047 ~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCr~ 1086 (1096)
...|.||++.....+++||||. ||..|.... -.||.||.
T Consensus 13 ~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 13 ELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 3479999999999999999999 999997664 36999994
No 155
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.70 E-value=0.0028 Score=65.68 Aligned_cols=51 Identities=22% Similarity=0.703 Sum_probs=41.3
Q ss_pred CCCCcccccccccccccceEEeCCCCcccchhhhhc-C---CCCCCCcccccceee
Q 001340 1042 NGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-C---SECPICRTKISDRLF 1093 (1096)
Q Consensus 1042 ~~~~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~-~---~~CPiCr~~i~~~i~ 1093 (1096)
+...-|..|.||.....+.|+..|||. ||..|+.. + ..|-+|.+...+.+.
T Consensus 191 ~~e~IPF~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~ 245 (259)
T COG5152 191 PGEKIPFLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFW 245 (259)
T ss_pred CCCCCceeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhcccee
Confidence 334467799999999999999999999 99999644 3 569999987666543
No 156
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=2.4 Score=53.08 Aligned_cols=87 Identities=24% Similarity=0.319 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----ccCCCcchhHHHHHHHHHHHHhhhhhh---HHHHHH-----------HHhHH
Q 001340 645 LEREIQEKRRQMRILEQRIIENG-----EASMANASMVDMQQTVTRLMSQCNEKA---FELEIK-----------SADNR 705 (1096)
Q Consensus 645 L~~elrdKeeei~~L~qki~~s~-----~~s~~~~~~~e~~~~v~~L~~~l~e~~---~ele~k-----------~ae~~ 705 (1096)
..+++++..++++.|..++...+ ..+.+ ....+||.++.+|.-++.++. |.+=-. .-+..
T Consensus 428 ~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~g-sA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~ 506 (698)
T KOG0978|consen 428 AERQIRQVEELSEELQKKEKNFKCLLSEMETIG-SAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKS 506 (698)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566777777766663332 11111 123367777777777666543 222110 12445
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 706 ILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 706 ~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.|.++..+.......+..++..|+.++
T Consensus 507 ~l~~~i~~l~~~~~~~~~~i~~leeq~ 533 (698)
T KOG0978|consen 507 KLEEQILTLKASVDKLELKIGKLEEQE 533 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555
No 157
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=95.66 E-value=8.3 Score=47.72 Aligned_cols=71 Identities=20% Similarity=0.276 Sum_probs=52.5
Q ss_pred HHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 774 HVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 844 (1096)
Q Consensus 774 ~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qi 844 (1096)
...|.-||..+..+.....-+.-.+.+-.+..+.+-.-+-++|.+|+..+.+|+.+|+..++.+..-...+
T Consensus 494 ~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev 564 (786)
T PF05483_consen 494 CNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEV 564 (786)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666665555555666666667777788888999999999999999999998887666554
No 158
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.62 E-value=5.3 Score=45.20 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHH---hhhHHHHHHHHHHHHHHHHH
Q 001340 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQ---NKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 678 e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~---~a~~e~~~L~~~l~~lk~~l 732 (1096)
++-.+|..|+...++++-.+...-.+.+.+.+..+ -.--.+..+++++.+|.-.+
T Consensus 66 eineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~ 123 (294)
T COG1340 66 EINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQ 123 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHH
Confidence 66777888888888877777777666677776666 45566777888888887766
No 159
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=95.59 E-value=9.4 Score=50.84 Aligned_cols=129 Identities=20% Similarity=0.190 Sum_probs=90.6
Q ss_pred HHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 001340 698 EIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQL 777 (1096)
Q Consensus 698 e~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L 777 (1096)
++..++.+.+++.+..-..++..+++++..-.+.+..+.+ ......+...++..+.+.+.+++.+...|
T Consensus 822 ~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~-----------~~~e~k~~~~~~~~~l~~~~qle~~~~~l 890 (1294)
T KOG0962|consen 822 DELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLIN-----------LRNELKEEKQKIERSLARLQQLEEDIEEL 890 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3446677777777888888888888888877777744443 12233344556677777888888888888
Q ss_pred HHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 778 SEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 844 (1096)
Q Consensus 778 ~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qi 844 (1096)
.+++..+..+...+.+ .|...+..+.....+-++++++.-+....+......+.+|...+
T Consensus 891 ~e~~~~~~s~~~e~~~-------~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l 950 (1294)
T KOG0962|consen 891 SEEITRLDSKVKELLE-------RIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLL 950 (1294)
T ss_pred HHHHHHHHHHHHhhHh-------hhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 8888877777666554 66667777888888888888886554444445557788888777
No 160
>PRK09039 hypothetical protein; Validated
Probab=95.58 E-value=1.5 Score=51.08 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHh
Q 001340 765 TENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGE-VTKL 819 (1096)
Q Consensus 765 ~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~e-v~kL 819 (1096)
.++..|+++...|..+...|...+.-+......+...+..++.+|.....+ +..|
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l 192 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQEL 192 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555555555566555533 5554
No 161
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.56 E-value=7.2 Score=46.28 Aligned_cols=48 Identities=23% Similarity=0.210 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 001340 890 DLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDL 937 (1096)
Q Consensus 890 ~~K~e~~a~~erq~aLE~el~~k~~~eeEl~~~leE~kkk~~~Le~el 937 (1096)
.+.+.+.+++.....|++++...++-.+||...-..+++.+..++.+.
T Consensus 200 kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~a 247 (420)
T COG4942 200 KLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAA 247 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 355566677777777777776666666666555555555555555444
No 162
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.0066 Score=66.89 Aligned_cols=41 Identities=32% Similarity=0.770 Sum_probs=32.5
Q ss_pred ccccccccccc---ceEEeCCCCcccchhhhhcC-----CCCCCCccccc
Q 001340 1048 HMCKVCFESPT---AAILLPCRHFCLCKSCSLAC-----SECPICRTKIS 1089 (1096)
Q Consensus 1048 ~~C~IC~~~~~---~~vl~pCgH~~~C~~C~~~~-----~~CPiCr~~i~ 1089 (1096)
-.|.||+++.. .++++||.|. |=..|...- .+||+||.+|.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 37999998542 3788999999 999994332 56999999875
No 163
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.0045 Score=68.25 Aligned_cols=46 Identities=20% Similarity=0.631 Sum_probs=39.7
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCccccccee
Q 001340 1046 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISDRL 1092 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCr~~i~~~i 1092 (1096)
-|..|.||..-..+-|+..|+|. ||..|+..- ..|++|.+.+-+.+
T Consensus 240 ~Pf~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred CCccccccccccccchhhcCCce-eehhhhccccccCCcceeccccccccc
Confidence 46689999999999999999999 999997553 56999999887754
No 164
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.54 E-value=1.3 Score=48.67 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 679 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 679 ~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.+..+.+++++++...=.+.-+..+...++.|...-+.++.++++++++++.++
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666555666666777777888888888888888888888887
No 165
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=7 Score=48.77 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHH
Q 001340 750 DEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 793 (1096)
Q Consensus 750 ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~ 793 (1096)
...+.++.....-.+.||+.|+++++.+++-+.+|..+.+.|..
T Consensus 471 kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ 514 (1118)
T KOG1029|consen 471 KTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNH 514 (1118)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34555555555666888888888888888888888888877766
No 166
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.39 E-value=10 Score=47.10 Aligned_cols=149 Identities=15% Similarity=0.128 Sum_probs=103.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHH
Q 001340 682 TVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQ 761 (1096)
Q Consensus 682 ~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~ 761 (1096)
.+..+..+-..+...+-..+...+.+-+.|..-..++.-+..++.+|.+..-. +-.-..-+...+.
T Consensus 364 r~~q~lke~~k~~~~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~--------------~~~~~krl~~~l~ 429 (716)
T KOG4593|consen 364 RARQLLKEELKQVAGITEEETKLKELHETLARRLQKRALLLTQERDLNRAILG--------------SKDDEKRLAEELP 429 (716)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------ccchHHHHHHHhH
Confidence 33333333333333444445567777777777777777777777777666611 1111122344555
Q ss_pred hhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001340 762 SQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 841 (1096)
Q Consensus 762 ~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e 841 (1096)
.+..+.+.|+.-+..+...+..+++-++.+..+...++.......-++|||-..+......+...+.+.+-+.+.+.++.
T Consensus 430 ~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ 509 (716)
T KOG4593|consen 430 QVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYL 509 (716)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 66778888888888888888888888888888888899999889999999999888888888888888776666676666
Q ss_pred HHH
Q 001340 842 AAM 844 (1096)
Q Consensus 842 ~qi 844 (1096)
..+
T Consensus 510 ke~ 512 (716)
T KOG4593|consen 510 KEL 512 (716)
T ss_pred HHH
Confidence 655
No 167
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.35 E-value=5.6 Score=44.85 Aligned_cols=140 Identities=19% Similarity=0.140 Sum_probs=77.1
Q ss_pred HHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCCCCchHHHHHHHHHH-------HhhHHHHHHHHH
Q 001340 701 SADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNG-DKSAGSSGQGTSDEYVDELRKKV-------QSQETENEKLKL 772 (1096)
Q Consensus 701 ~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e-~~~~~~~~~~e~ee~~~el~~~~-------~~Q~~Eie~lk~ 772 (1096)
...+..|.+||..|++....|+-++...+..|-++.= .+ ..........-.+.|+...+ .+.+..-+-++.
T Consensus 143 kd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE-~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eE 221 (305)
T PF14915_consen 143 KDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALE-SVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEE 221 (305)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4467999999999999999999999888888733221 00 00000001111223333222 233333333355
Q ss_pred HHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001340 773 EHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVEL----KNLA----GEVTKLSLQNAKLEKELLAARESMHSRG 841 (1096)
Q Consensus 773 e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~ql----k~l~----~ev~kL~~~n~qL~~Ele~~k~~~~~~e 841 (1096)
....|+-||.=|..+++-+-..+....-....+-++. +.|. +++--|+.-|..|-.+....|+.+-+|+
T Consensus 222 RL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qyE 298 (305)
T PF14915_consen 222 RLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYE 298 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777666665554443333333333 2222 2222366667777777777777766665
No 168
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.20 E-value=1.6 Score=48.04 Aligned_cols=181 Identities=17% Similarity=0.132 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHh
Q 001340 716 SENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEA 795 (1096)
Q Consensus 716 ~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~ 795 (1096)
.++.++.++.-.+.++. ....+++.-+.+.+.+-..|.+.|+....+|+-.-..|+.+.+-++---
T Consensus 9 a~iae~k~e~sAlhqK~--------------~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~g 74 (389)
T KOG4687|consen 9 AEIAELKKEFSALHQKC--------------GAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACG 74 (389)
T ss_pred HHHHHHHHHHHHHHHHh--------------cccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcC
Confidence 46777777777777777 2234566667777777777888888888888888888888888776533
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 001340 796 SYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE--------------LLAARESMHSRGAAMQTVNGVNRKYSDGMKAG 861 (1096)
Q Consensus 796 ~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~E--------------le~~k~~~~~~e~qiq~v~~dar~~lq~l~~~ 861 (1096)
..++ .-+..+-.+|+.-+.+-..+|.+|+.+ .+-.++..++++...+. .+.++
T Consensus 75 c~a~---~e~gterqdLaa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a---------~aseN- 141 (389)
T KOG4687|consen 75 CDAK---IEFGTERQDLAADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEKMA---------GASEN- 141 (389)
T ss_pred CCch---hhccchhhHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhc---------ccccc-
Confidence 3322 223334455555555555555555554 44444444444432211 10000
Q ss_pred ccccccCccccccCcccccccCCCCCchhHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 001340 862 RKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLE-LQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDL 937 (1096)
Q Consensus 862 ~~e~l~~~~~~~~~~~~~~~~~~w~~~~~~K~e-~~a~~erq~aLE~el~~k~~~eeEl~~~leE~kkk~~~Le~el 937 (1096)
+.+....- .|+--+..+.. ....+.+-+.|+..+.+--...+||-...++++.|...|-+||
T Consensus 142 -------------aarneeel-qwrrdeanfic~~EgLkak~a~LafDLkamideKEELimERDa~kcKa~RLnhEL 204 (389)
T KOG4687|consen 142 -------------AARNEEEL-QWRRDEANFICAHEGLKAKCAGLAFDLKAMIDEKEELIMERDAMKCKAARLNHEL 204 (389)
T ss_pred -------------cccchHHH-HhhHHHHHHHHHHHHHHHHhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhhHH
Confidence 00111111 24433333333 3333445566777776666677788888999999999999988
No 169
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.18 E-value=1.5 Score=43.96 Aligned_cols=125 Identities=21% Similarity=0.229 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHH---hHHHHHHHHHhhhHH
Q 001340 641 QIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSA---DNRILQEQLQNKCSE 717 (1096)
Q Consensus 641 Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~a---e~~~lqeqL~~a~~e 717 (1096)
++..|..++......++....++..... |+..+........+.+.-|+--.+. +...++++++....+
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~---------dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~ 74 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLRE---------DLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQE 74 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666654333 5556666666666665555554433 677788899999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHH
Q 001340 718 NKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKL 791 (1096)
Q Consensus 718 ~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl 791 (1096)
+..|+.+++.++..+.... . .+...-..-..|++.++.....|.++|.-|..+++.+
T Consensus 75 ~~~l~~~~~~a~~~l~~~e--------------~---sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 75 INELKAEAESAKAELEESE--------------A---SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------H---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999998882111 1 1222222334677788888888888888888888765
No 170
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.15 E-value=13 Score=46.67 Aligned_cols=77 Identities=13% Similarity=0.111 Sum_probs=45.2
Q ss_pred HHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 768 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 844 (1096)
Q Consensus 768 e~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qi 844 (1096)
..|.++...|.+.+++|.-+++-..-....+|.-....--+.+-.+.+++.|.++...+.+-|-.+--+...|..|+
T Consensus 440 ~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ql 516 (1118)
T KOG1029|consen 440 KQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQL 516 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45666677777777777776666655555555555555555555555566665555555555444444445566555
No 171
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.13 E-value=11 Score=45.93 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cc-cCCCcchhHH
Q 001340 603 MDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIEN---GE-ASMANASMVD 678 (1096)
Q Consensus 603 ~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~Q~qkL~~elrdKeeei~~L~qki~~s---~~-~s~~~~~~~e 678 (1096)
.+.||+--..|.+.+-...+.+..+..-... -..-+..|+.++..|+++++.|.+.+-.. +. ..-+..++-.
T Consensus 261 ~eslre~~~~L~~D~nK~~~y~~~~~~k~~~----~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~ 336 (581)
T KOG0995|consen 261 EESLREKKARLQDDVNKFQAYVSQMKSKKQH----MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVER 336 (581)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 4556666666666666655555422211100 01125578999999999998887776211 11 0112225656
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHH
Q 001340 679 MQQTVTRLMSQCNEKAFELEIKSA 702 (1096)
Q Consensus 679 ~~~~v~~L~~~l~e~~~ele~k~a 702 (1096)
|-.+-.+|...+++...+++....
T Consensus 337 mn~Er~~l~r~l~~i~~~~d~l~k 360 (581)
T KOG0995|consen 337 MNLERNKLKRELNKIQSELDRLSK 360 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777776544
No 172
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.08 E-value=6.8 Score=47.92 Aligned_cols=173 Identities=14% Similarity=0.169 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhhhccC-CCCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCCc--
Q 001340 603 MDLLVEQVKMLAGEIAFSSSNLKRLVDQSVN-DPDGSK---VQIQNLEREIQEKRRQMRILEQRIIENG---EASMAN-- 673 (1096)
Q Consensus 603 ~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~-~~~~~~---~Q~qkL~~elrdKeeei~~L~qki~~s~---~~s~~~-- 673 (1096)
.+.|.+|++.+..++......|..|-...+- +|+... .++..++.++...+.++..+..++.... ...++.
T Consensus 163 ~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~ 242 (498)
T TIGR03007 163 QRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLL 242 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcC
Confidence 5778888888888888888888888765543 233221 2344555555555555555555442111 111110
Q ss_pred ----chhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCc
Q 001340 674 ----ASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTS 749 (1096)
Q Consensus 674 ----~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ 749 (1096)
.....+..++..+..+ ...+..++.+.--....++.+++.++.++.+...............
T Consensus 243 ~~~~~~~~~l~~~l~~l~~~--------------l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~ 308 (498)
T TIGR03007 243 AGSSVANSELDGRIEALEKQ--------------LDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIA 308 (498)
T ss_pred cccccCCCchHHHHHHHHHH--------------HHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCccccccc
Confidence 0111233333333333 3344455566667777788888888888744433111111111122
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHH
Q 001340 750 DEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQ 789 (1096)
Q Consensus 750 ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~ 789 (1096)
...+.++...+.....+++.++.....|..+-..++.+..
T Consensus 309 ~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 348 (498)
T TIGR03007 309 NPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLR 348 (498)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333444444444444555555554444444444443333
No 173
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.07 E-value=15 Score=47.15 Aligned_cols=104 Identities=23% Similarity=0.227 Sum_probs=78.3
Q ss_pred HHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 001340 698 EIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQL 777 (1096)
Q Consensus 698 e~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L 777 (1096)
....+|+..|..-|.+++..+.+|.+.-......+ ..+. .-++-.++++..|
T Consensus 102 ~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~---------------------~~l~-------~~l~~~eken~~L 153 (769)
T PF05911_consen 102 AESAAENSALSKALQEKEKLIAELSEEKSQAEAEI---------------------EDLM-------ARLESTEKENSSL 153 (769)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH---------------------HHHH-------HHHHHHHHHHHHH
Confidence 33456777777777777777777666554444433 1222 3446667778888
Q ss_pred HHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001340 778 SEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 829 (1096)
Q Consensus 778 ~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~E 829 (1096)
.=|...|..+++--+.|-.|-..-|-+|--|+-.-+++|.||+++=+||+.=
T Consensus 154 kye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l 205 (769)
T PF05911_consen 154 KYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRAL 205 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888999999999999999999999999999999999875
No 174
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.99 E-value=6.4 Score=49.09 Aligned_cols=64 Identities=20% Similarity=0.313 Sum_probs=42.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHhhhhh
Q 001340 888 PDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKLKKEV 951 (1096)
Q Consensus 888 ~~~~K~e~~a~~erq~aLE~el~~k~~~eeEl~~~leE~kkk~~~Le~el~~~~~l~~~Lkke~ 951 (1096)
.+.+...+.........+...+.+....=-++...+++..++...++.+...||.-+..|+++-
T Consensus 346 ~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE 409 (560)
T PF06160_consen 346 VRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDE 409 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544445557788888888888888888888888886653
No 175
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.97 E-value=3.7 Score=51.48 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHccccCCCC
Q 001340 437 YQREISSLKEELDQLKRGILVGVS 460 (1096)
Q Consensus 437 ~~~ei~~Lk~el~~~~~~~~~~~~ 460 (1096)
+-.+...++++|-........+.+
T Consensus 452 ~l~dn~~~kEeLlrV~l~~~~gn~ 475 (970)
T KOG0946|consen 452 LLQDNDQLKEELLRVPLAVDTGND 475 (970)
T ss_pred HHHHhHHHHHHHHhhhhcccCCCC
Confidence 344566777777665444333333
No 176
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.016 Score=65.38 Aligned_cols=44 Identities=30% Similarity=0.754 Sum_probs=31.6
Q ss_pred CCcccccccccccc-------------cceEEeCCCCcccchhhh----hcCCCCCCCcccc
Q 001340 1044 DPNSHMCKVCFESP-------------TAAILLPCRHFCLCKSCS----LACSECPICRTKI 1088 (1096)
Q Consensus 1044 ~~~~~~C~IC~~~~-------------~~~vl~pCgH~~~C~~C~----~~~~~CPiCr~~i 1088 (1096)
.+++..|.||++.. +..-=+||||. +=-.|- .+.+.||+||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence 34567899999861 11244799997 778883 3447799999983
No 177
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.80 E-value=1.5 Score=48.33 Aligned_cols=82 Identities=21% Similarity=0.265 Sum_probs=72.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001340 757 RKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 836 (1096)
Q Consensus 757 ~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~ 836 (1096)
++++...+.|+-.|++|+..|.|.-..|....++++-+.-.......-++.||-.+-+.+++|+.+..++..||+..+..
T Consensus 52 KqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 52 KQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444556677788999999999999999999999999999999999999999999999999999999999999987755
Q ss_pred HH
Q 001340 837 MH 838 (1096)
Q Consensus 837 ~~ 838 (1096)
..
T Consensus 132 ~~ 133 (307)
T PF10481_consen 132 AS 133 (307)
T ss_pred hc
Confidence 43
No 178
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=94.79 E-value=14 Score=45.48 Aligned_cols=153 Identities=14% Similarity=0.169 Sum_probs=77.2
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHH
Q 001340 600 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDM 679 (1096)
Q Consensus 600 ~d~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~ 679 (1096)
.++.-.|+-.+.++..|+......|+.+-.+-.+.|.+...-.......++..++.+..+...+....+ +....
T Consensus 108 ~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~------~~~~~ 181 (511)
T PF09787_consen 108 SSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDG------NAITA 181 (511)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCc------cHHHH
Confidence 345544554555566666666666665522223334333322223344456666666666666653322 11011
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHH
Q 001340 680 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKK 759 (1096)
Q Consensus 680 ~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~ 759 (1096)
.+.-++..++ +..+...|.+++. |...+....++...+..++ .-++..
T Consensus 182 --~~~fl~rtl~--------~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l---------------------~l~~~~ 229 (511)
T PF09787_consen 182 --VVEFLKRTLK--------KEIERQELEERPK-ALRHYIEYLRESGELQEQL---------------------ELLKAE 229 (511)
T ss_pred --HHHHHHHHHH--------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---------------------HHHHHH
Confidence 1111122221 1224456666666 5566666666666666555 223444
Q ss_pred HHhhHHHHHHHHHHHHHhHHhhhhHHHHHHH
Q 001340 760 VQSQETENEKLKLEHVQLSEENSGLHVQNQK 790 (1096)
Q Consensus 760 ~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~k 790 (1096)
...+..|..+||+.-......+.+|...+..
T Consensus 230 ~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~ 260 (511)
T PF09787_consen 230 GESEEAELQQYKQKAQRILQSKEKLIESLKE 260 (511)
T ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 5566777788886655555666666555544
No 179
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.76 E-value=16 Score=45.78 Aligned_cols=59 Identities=15% Similarity=0.145 Sum_probs=37.2
Q ss_pred HHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001340 778 SEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 836 (1096)
Q Consensus 778 ~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~ 836 (1096)
.+.+..+..+.+.|-+--..-..-..........+-+.++++..+|..|..|++..+.+
T Consensus 281 ~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 281 EEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444444443333333444455566677788888888899999988888877
No 180
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.73 E-value=0.82 Score=49.67 Aligned_cols=126 Identities=21% Similarity=0.266 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhh--hhhhhhhhhhhhccccccCccccccCcccc
Q 001340 803 SAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM-QTVNG--VNRKYSDGMKAGRKGRLSGRSTEISGVVSD 879 (1096)
Q Consensus 803 ~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qi-q~v~~--dar~~lq~l~~~~~e~l~~~~~~~~~~~~~ 879 (1096)
+-++.||.++-.+..+|+..|.+|.-|++..|+..-+...|. |.++. |--.++.++....++.+..+.. ..+
T Consensus 48 aelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQ-----aND 122 (333)
T KOG1853|consen 48 AELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQ-----AND 122 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcc
Confidence 334445555555666666666666666666665554444444 33322 2222222222222222222211 001
Q ss_pred cccCC----CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 001340 880 DFDSW----NLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDL 937 (1096)
Q Consensus 880 ~~~~~----w~~~~~~K~e~~a~~erq~aLE~el~~k~~~eeEl~~~leE~kkk~~~Le~el 937 (1096)
.++-- -......-.-+.-.-++.+-||+||-+|+.+-++ +.-+|.....|.+||
T Consensus 123 dLErakRati~sleDfeqrLnqAIErnAfLESELdEke~lles----vqRLkdEardlrqel 180 (333)
T KOG1853|consen 123 DLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLES----VQRLKDEARDLRQEL 180 (333)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 11111 1122333444455567888899999998877776 444555556777777
No 181
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.62 E-value=6 Score=46.84 Aligned_cols=120 Identities=19% Similarity=0.235 Sum_probs=62.6
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhh
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENS 782 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~ 782 (1096)
+++.=|-+.++..+.+.-|+++|..|+-+. .++...-+.|++|+ +-|++|--++-...-||.
T Consensus 325 tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~-----------~kQqvfvDiinkLk-------~niEeLIedKY~viLEKn 386 (527)
T PF15066_consen 325 TNRKQQNRIQDLQCSNLYLEKKVKELQMKI-----------TKQQVFVDIINKLK-------ENIEELIEDKYRVILEKN 386 (527)
T ss_pred hhHHHHHHHHHhhhccHHHHHHHHHHHHHh-----------hhhhHHHHHHHHHH-------HHHHHHHHhHhHhhhhhh
Confidence 444555666777888888888888887776 11111222222222 223333333333333444
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHH
Q 001340 783 GLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE----LLAARESMHSR 840 (1096)
Q Consensus 783 ~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~E----le~~k~~~~~~ 840 (1096)
.+...++.|-+-....+-+---...+.+.|.=++.|+.+.-.+|.+. +..+...+++|
T Consensus 387 d~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqc 448 (527)
T PF15066_consen 387 DIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQC 448 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 44444555555333333333334555666666777777777777664 44444444444
No 182
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=94.60 E-value=0.017 Score=72.21 Aligned_cols=91 Identities=27% Similarity=0.555 Sum_probs=59.2
Q ss_pred CCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcCC
Q 001340 137 NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP 216 (1096)
Q Consensus 137 ~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~ 216 (1096)
.....|.|+.+......+..-+. -+.+.+..++++++.. +|++|+|.+.....|++-+.+..++......+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (670)
T KOG0239|consen 23 NPKKRFELARVYSPSVGQPSLFS-DVQPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFKELIDLANSDK 93 (670)
T ss_pred ccccccCccccccccccccccCC-ccccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhhhcccccccCC
Confidence 34456777776655433332222 1223455566666654 89999999999988988888887776543333
Q ss_pred CCeeEEEEeeeeeecceeeecCCCCC
Q 001340 217 GREFLLRVSYLEIYNEVINDLLDPTG 242 (1096)
Q Consensus 217 ~~~~~v~vS~lEIYnE~i~DLL~~~~ 242 (1096)
+.. .++.|++.+.|++....
T Consensus 94 ~~~------~~~~~~~~~~~~~~~~q 113 (670)
T KOG0239|consen 94 TSN------VVEAYNERLRDLLSELQ 113 (670)
T ss_pred Cch------hHHHHHHHHhhhccccc
Confidence 222 67889999999997543
No 183
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.57 E-value=21 Score=46.48 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=13.4
Q ss_pred CchhhHHHHHHHHHHHHHHHh
Q 001340 599 TSDQMDLLVEQVKMLAGEIAF 619 (1096)
Q Consensus 599 ~~d~~d~l~eq~k~l~~e~a~ 619 (1096)
..+++|.|+++...|..++..
T Consensus 650 dek~~~~L~~~k~rl~eel~e 670 (1141)
T KOG0018|consen 650 DEKEVDQLKEKKERLLEELKE 670 (1141)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 345677777776666666555
No 184
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.56 E-value=2.9 Score=42.73 Aligned_cols=47 Identities=26% Similarity=0.238 Sum_probs=28.2
Q ss_pred HHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 686 LMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 686 L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
|+.+-+...-.++...+.++.+.+++..++.+|..|++++..|..++
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~el 51 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEEL 51 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344433334444455666666666777777777777777777666
No 185
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.54 E-value=0.01 Score=75.62 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 001340 487 EAKAALMSRIQRLTK 501 (1096)
Q Consensus 487 ~~~~~l~~~~~~l~~ 501 (1096)
.....++.-|+.++.
T Consensus 141 ~~Q~~im~~Iqev~~ 155 (713)
T PF05622_consen 141 STQHAIMEAIQEVTS 155 (713)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 344455666666543
No 186
>PRK01156 chromosome segregation protein; Provisional
Probab=94.50 E-value=23 Score=46.64 Aligned_cols=30 Identities=10% Similarity=0.216 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
+...|++.+.....++.++...+..|+...
T Consensus 417 ~~~~l~~~i~~l~~~i~~l~~~~~el~~~~ 446 (895)
T PRK01156 417 KLQDISSKVSSLNQRIRALRENLDELSRNM 446 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555666666666555443
No 187
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=94.47 E-value=12 Score=43.26 Aligned_cols=62 Identities=21% Similarity=0.170 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccCccc
Q 001340 806 AVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRST 871 (1096)
Q Consensus 806 ~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qiq~v~~dar~~lq~l~~~~~e~l~~~~~ 871 (1096)
.-+|+-|++..-.--.+|..|...+++-+ +-..|||.-+.+.-..+|.|-+...++|..++.
T Consensus 427 qRELeVLSEQYSQKCLEnahLaqalEaer----qaLRqCQrEnQELnaHNQELnnRLaaEItrLRt 488 (593)
T KOG4807|consen 427 QRELEVLSEQYSQKCLENAHLAQALEAER----QALRQCQRENQELNAHNQELNNRLAAEITRLRT 488 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444455455444455666655555444 334455554554445555566666666665553
No 188
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.43 E-value=3.3 Score=44.40 Aligned_cols=97 Identities=23% Similarity=0.280 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHH
Q 001340 601 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQ 680 (1096)
Q Consensus 601 d~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~ 680 (1096)
-+|-||+-|+|+.-.|++...+.+- .|..++++.+..+......+....
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv------------------~Lr~ql~e~~~~l~~~~~~~~~l~------------- 58 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIV------------------SLRAQLRELRAELRNKESQIQELQ------------- 58 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHH------------------HHHHHHHHHHHHHHhhHHHHHHHH-------------
Confidence 4588999999999999888666553 244444444444444444433111
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001340 681 QTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLL 728 (1096)
Q Consensus 681 ~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~l 728 (1096)
..+..-..+++...-+|..+..+...|++.+...+.++..|+..+..+
T Consensus 59 ~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 59 DSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 111111222233333334444455666777776666777666666665
No 189
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=94.39 E-value=0.023 Score=51.12 Aligned_cols=36 Identities=31% Similarity=0.794 Sum_probs=27.0
Q ss_pred ccccccccc-------------cceEEeCCCCcccchhhhhc----CCCCCCCc
Q 001340 1049 MCKVCFESP-------------TAAILLPCRHFCLCKSCSLA----CSECPICR 1085 (1096)
Q Consensus 1049 ~C~IC~~~~-------------~~~vl~pCgH~~~C~~C~~~----~~~CPiCr 1085 (1096)
.|.||++.. ..+++++|||. |...|... ...||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 499999865 45677899999 99999543 25699998
No 190
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=94.38 E-value=27 Score=46.84 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---ccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHH
Q 001340 643 QNLEREIQEKRRQMRILEQRIIENG---EASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENK 719 (1096)
Q Consensus 643 qkL~~elrdKeeei~~L~qki~~s~---~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~ 719 (1096)
+.++..+.+--.+++.+.+++.... .......+..+++|++....++|.+..-++.......+.+...++..--...
T Consensus 68 ~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~ 147 (1109)
T PRK10929 68 KQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQT 147 (1109)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHH
Confidence 3455555555555555555554211 1122333456777777766666554322222222222122222221111226
Q ss_pred HHHHHHHHHHHHH
Q 001340 720 KLQEKVNLLEQQL 732 (1096)
Q Consensus 720 ~L~~~l~~lk~~l 732 (1096)
++++.++..+.++
T Consensus 148 ~~~~~l~~i~~~L 160 (1109)
T PRK10929 148 EARRQLNEIERRL 160 (1109)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777777776
No 191
>PF13514 AAA_27: AAA domain
Probab=94.34 E-value=29 Score=47.03 Aligned_cols=135 Identities=21% Similarity=0.215 Sum_probs=73.7
Q ss_pred HHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHh
Q 001340 701 SADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEE 780 (1096)
Q Consensus 701 ~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee 780 (1096)
......+..++..+..++..++.++..++.++....- ....-.....|..|. .+..++.+...+...+..+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~-----~~~ll~~~~~I~~L~----~~~~~~~~~~~dl~~~~~e 311 (1111)
T PF13514_consen 241 AERLEQLEEELAEAQAQLERLQEELAQLEEELDALPV-----DEELLAHAAEIEALE----EQRGEYRKARQDLPRLEAE 311 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4477778888888888888888888888888722111 000012233333332 3333344444444444444
Q ss_pred hhhHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 781 NSGLHVQNQKLAEEAS--------YAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 844 (1096)
Q Consensus 781 ~~~L~~e~~kl~~e~~--------~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qi 844 (1096)
...+..++..+...-. ..-+.-.+...++..|..+...+......++.+++..+........++
T Consensus 312 ~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 383 (1111)
T PF13514_consen 312 LAELEAELRALLAQLGPDWDEEDLEALDPSLAARERIRELLQEREQLEQALAQARRELEEAERELEQLQAEL 383 (1111)
T ss_pred HHHHHHHHHHHHHhcCCCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443333222 111122235566667777777777777777777776666666665554
No 192
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.14 E-value=0.014 Score=74.53 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001340 827 EKELLAARESMHSRGAAMQ 845 (1096)
Q Consensus 827 ~~Ele~~k~~~~~~e~qiq 845 (1096)
+-+...+...+..|.+-++
T Consensus 311 q~e~~~Le~el~sW~sl~~ 329 (722)
T PF05557_consen 311 QLENEKLEDELNSWESLLQ 329 (722)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444455567776443
No 193
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.13 E-value=0.014 Score=74.50 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001340 813 AGEVTKLSLQNAKLEKELLAARESMH 838 (1096)
Q Consensus 813 ~~ev~kL~~~n~qL~~Ele~~k~~~~ 838 (1096)
...+.+|+.+|.+|..|+..++....
T Consensus 256 l~~i~~LE~en~~l~~Elk~Lr~~~~ 281 (722)
T PF05557_consen 256 LAHIRELEKENRRLREELKHLRQSQE 281 (722)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777777777555554433
No 194
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.05 E-value=14 Score=42.25 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHhHHhhhhHHHHHHHHHH
Q 001340 763 QETENEKLKLEHVQLSEENSGLHVQNQKLAE 793 (1096)
Q Consensus 763 Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~ 793 (1096)
|..=+.+|-.....|..+|..|..+++.-..
T Consensus 176 QE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s 206 (310)
T PF09755_consen 176 QEALVNRLWKQMDKLEAEKRRLQEKLEQPVS 206 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 3344566666777777888888888776433
No 195
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.031 Score=61.21 Aligned_cols=44 Identities=30% Similarity=0.725 Sum_probs=34.1
Q ss_pred CcccccccccccccceEE-eCCCCcccchhhhhcC------CCCCCCccccc
Q 001340 1045 PNSHMCKVCFESPTAAIL-LPCRHFCLCKSCSLAC------SECPICRTKIS 1089 (1096)
Q Consensus 1045 ~~~~~C~IC~~~~~~~vl-~pCgH~~~C~~C~~~~------~~CPiCr~~i~ 1089 (1096)
.+..+|++|-+.++...+ +||||. +|..|.... -.||.|..++.
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCc
Confidence 456799999998876555 569998 999995443 25999998764
No 196
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.01 E-value=21 Score=44.55 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001340 679 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLA 733 (1096)
Q Consensus 679 ~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~ 733 (1096)
.|..|.+....+.|..+.|++-..=...-.+++.+.+.+.+..+.+||.+|.||.
T Consensus 346 ~QEKI~RYQ~Dl~Elt~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLA 400 (1480)
T COG3096 346 QQEKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLA 400 (1480)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888888877666666667777778888888888888888873
No 197
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.99 E-value=0.62 Score=49.90 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001340 767 NEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 836 (1096)
Q Consensus 767 ie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~ 836 (1096)
++.....+..|.+|...|..++..+.+ ++.+|+.+|..|-+-....+..
T Consensus 139 l~ek~k~~e~l~DE~~~L~l~~~~~e~---------------------k~~~l~~En~~Lv~Rwm~~k~~ 187 (194)
T PF08614_consen 139 LKEKNKANEILQDELQALQLQLNMLEE---------------------KLRKLEEENRELVERWMQRKAQ 187 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666667777777777766666 7788888888887765555533
No 198
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.74 E-value=16 Score=42.04 Aligned_cols=141 Identities=19% Similarity=0.185 Sum_probs=80.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHH
Q 001340 681 QTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKV 760 (1096)
Q Consensus 681 ~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~ 760 (1096)
..++.+..+-.+.+-.| ..|...|++.|.++...|.-|++++.+.+.... .........+.+..
T Consensus 68 ~~La~lL~~sre~Nk~L---~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~-----~~~~~~~~~ere~l-------- 131 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKL---KEEVEELRQKLNEAQGDIKLLREKLARQRVGDE-----GIGARHFPHEREDL-------- 131 (319)
T ss_pred hhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhc-----cccccccchHHHHH--------
Confidence 34445544444443332 356778888888888888888888887765541 11111111122222
Q ss_pred HhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHH
Q 001340 761 QSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGE-------VTKLSLQNAKLEKELLAA 833 (1096)
Q Consensus 761 ~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~e-------v~kL~~~n~qL~~Ele~~ 833 (1096)
+.++|+++.....|.-+.+.+..+.+.+..|-.+++..+..+-.||--+..- |+.|-.+|+-|.+.+...
T Consensus 132 ---V~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~ 208 (319)
T PF09789_consen 132 ---VEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQL 208 (319)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 2344455555555555555555555556666667777777777776554433 777777777776666655
Q ss_pred HHHHHHH
Q 001340 834 RESMHSR 840 (1096)
Q Consensus 834 k~~~~~~ 840 (1096)
+++..-.
T Consensus 209 qeE~~l~ 215 (319)
T PF09789_consen 209 QEEKELL 215 (319)
T ss_pred HHHHHHH
Confidence 5554433
No 199
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=93.67 E-value=0.037 Score=49.72 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=32.3
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhc-----CCCCCCCcccccc
Q 001340 1046 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-----CSECPICRTKISD 1090 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~-----~~~CPiCr~~i~~ 1090 (1096)
....|+||.+-.++.|+.||||. ||..|... ...||+|+.++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 45589999999999999999987 99999433 2559999998765
No 200
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.56 E-value=6.1 Score=42.47 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=11.7
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLEQ 730 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk~ 730 (1096)
.++.++..|.+++.++..++.++..|+.
T Consensus 83 ~~r~~~~klk~~~~el~k~~~~l~~L~~ 110 (194)
T PF15619_consen 83 QERELERKLKDKDEELLKTKDELKHLKK 110 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333
No 201
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.52 E-value=5.7 Score=48.86 Aligned_cols=129 Identities=21% Similarity=0.171 Sum_probs=71.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHH-HhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 001340 755 ELRKKVQSQETENEKLKLEHV-QLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAA 833 (1096)
Q Consensus 755 el~~~~~~Q~~Eie~lk~e~~-~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~ 833 (1096)
|+...-.+|+.+|+++++++. .|-++-.++..+.++-.. ..+ ..++.+.|..-.+++.|.... +.+....
T Consensus 842 EmenlErqQkq~iE~~Eq~h~~rlR~eakRir~EQekd~~---~Fq---e~LK~~kKe~k~e~~~l~k~q---rkdalkq 912 (1187)
T KOG0579|consen 842 EMENLERQQKQEIEDTEQAHEHRLRNEAKRIRIEQEKDMR---AFQ---ERLKQEKKEFKQELTMLSKVQ---RKDALKQ 912 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH---HHH---HHHHHHHHHHHHHHhhhhHHH---HHHHHHH
Confidence 333344678889999988764 577777777777766333 111 223444444455555554332 2232222
Q ss_pred HHHHHHHHHHH---HHhhh---hhhhhhhhhhhhccccccCccccccCcccccccCCCCCchhHHHHHHHHHHHHHHHHH
Q 001340 834 RESMHSRGAAM---QTVNG---VNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEA 907 (1096)
Q Consensus 834 k~~~~~~e~qi---q~v~~---dar~~lq~l~~~~~e~l~~~~~~~~~~~~~~~~~~w~~~~~~K~e~~a~~erq~aLE~ 907 (1096)
+-+--..+.|+ -.|-. ++.+.|+.++.+-+++++... ++-++-..++..+-|+
T Consensus 913 r~eq~~~~~ql~ekdFv~kqqq~le~~lkrm~~~~k~ema~iE---------------------recLm~Kq~LlRarEa 971 (1187)
T KOG0579|consen 913 RKEQIEIEHQLKEKDFVMKQQQNLEAMLKRMAEKHKEEMASIE---------------------RECLMQKQNLLRAREA 971 (1187)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---------------------HHHHHHHHHHHHHHHH
Confidence 22222333343 22222 667777778888778877633 3445555666667777
Q ss_pred HHHHHH
Q 001340 908 ALAEKE 913 (1096)
Q Consensus 908 el~~k~ 913 (1096)
.||+.+
T Consensus 972 aiWElE 977 (1187)
T KOG0579|consen 972 AIWELE 977 (1187)
T ss_pred HHhHhH
Confidence 777654
No 202
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.47 E-value=0.026 Score=69.57 Aligned_cols=40 Identities=35% Similarity=0.869 Sum_probs=33.2
Q ss_pred cccccccccccc-----eEEeCCCCcccchhhhhc----CCCCCCCcccc
Q 001340 1048 HMCKVCFESPTA-----AILLPCRHFCLCKSCSLA----CSECPICRTKI 1088 (1096)
Q Consensus 1048 ~~C~IC~~~~~~-----~vl~pCgH~~~C~~C~~~----~~~CPiCr~~i 1088 (1096)
..|.||++.-.. .-.+||+|. ||..|-.. ...||+||..+
T Consensus 292 ~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 292 ELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred Ceeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhh
Confidence 379999998877 788999999 99999433 36799999943
No 203
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.45 E-value=15 Score=43.47 Aligned_cols=32 Identities=22% Similarity=0.131 Sum_probs=16.3
Q ss_pred HHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 701 SADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 701 ~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.++...++.++..+..+...+++++++.+.-+
T Consensus 157 ~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~ 188 (423)
T TIGR01843 157 EAELAGLQAQLQALRQQLEVISEELEARRKLK 188 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555544443
No 204
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=93.33 E-value=18 Score=41.15 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 001340 752 YVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVEL 809 (1096)
Q Consensus 752 ~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~ql 809 (1096)
.+.++.+.+..-..+...|..+...|.++-+.-..+|-++-.++.--+..|.-+-.+.
T Consensus 159 ~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ 216 (294)
T COG1340 159 KLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEF 216 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555555555555555555554444444444433333
No 205
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=0.045 Score=64.31 Aligned_cols=45 Identities=29% Similarity=0.793 Sum_probs=37.9
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001340 1045 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISD 1090 (1096)
Q Consensus 1045 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCr~~i~~ 1090 (1096)
.+...|.||+...-..|..||||- +|..|..++ ..||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 466689999999988888999999 999995444 569999988764
No 206
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.25 E-value=0.052 Score=59.12 Aligned_cols=50 Identities=30% Similarity=0.527 Sum_probs=30.8
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
..|+||.-+. +..++..|. ++..+.+.--..|| .+|-||++|+||||-|.
T Consensus 3 ~~~tFdnfv~-g~~N~~a~~-~~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 3 PKYTFDNFVV-GESNELAYA-AAKAIAENPGERYN-PLFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp TT-SCCCS---TTTTHHHHH-HHHHHHHSTTTSSS-EEEEEESTTSSHHHHHH
T ss_pred CCCccccCCc-CCcHHHHHH-HHHHHHhcCCCCCC-ceEEECCCCCCHHHHHH
Confidence 3599998664 445666665 34444444222244 47889999999999764
No 207
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=93.16 E-value=0.026 Score=73.15 Aligned_cols=153 Identities=20% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchh-HHHHHHHHHHHHhhhhhhHHHHHH--------HHhHHHHHHH
Q 001340 640 VQIQNLEREIQEKRRQMRILEQRIIENGEASMANASM-VDMQQTVTRLMSQCNEKAFELEIK--------SADNRILQEQ 710 (1096)
Q Consensus 640 ~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~-~e~~~~v~~L~~~l~e~~~ele~k--------~ae~~~lqeq 710 (1096)
.--.|..+..+|...+++.|-.++..+++.+.....+ .--..++.+|+.+|++.....+.. +..+..|.+|
T Consensus 60 ~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eq 139 (859)
T PF01576_consen 60 QARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQ 139 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344667777788888888888887777655442211 122457888898888766655543 2244455555
Q ss_pred HHh-------hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-CCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhh
Q 001340 711 LQN-------KCSENKKLQEKVNLLEQQLACQNGDKSAGSSG-QGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENS 782 (1096)
Q Consensus 711 L~~-------a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~-~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~ 782 (1096)
|.. ++-.-..|+.+++.|..++-.... ......+ ....+..+.+++.++......+.++...+..|..++.
T Consensus 140 le~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k-~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~ 218 (859)
T PF01576_consen 140 LEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQK-AKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENS 218 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 533 333444444555555555521111 0000011 1234455555555554444455555555555555555
Q ss_pred hHHHHHHHHHH
Q 001340 783 GLHVQNQKLAE 793 (1096)
Q Consensus 783 ~L~~e~~kl~~ 793 (1096)
.|..+++-+-.
T Consensus 219 eL~~qLee~e~ 229 (859)
T PF01576_consen 219 ELTRQLEEAES 229 (859)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 55554443333
No 208
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=93.02 E-value=0.072 Score=59.15 Aligned_cols=53 Identities=13% Similarity=-0.113 Sum_probs=44.1
Q ss_pred CCCCcccccccccccccceEEeCCCCcccchhhhhcC--CCCCCCcccccceeec
Q 001340 1042 NGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC--SECPICRTKISDRLFA 1094 (1096)
Q Consensus 1042 ~~~~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~--~~CPiCr~~i~~~i~i 1094 (1096)
+.+-...+|.+|-..-..+++.||+|..+|..|+... ..||+|...+-..++|
T Consensus 338 ~~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 338 NGLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred ccchhhcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 4444667999999999999999999999999997654 6799999887776665
No 209
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.02 E-value=33 Score=44.59 Aligned_cols=154 Identities=13% Similarity=0.186 Sum_probs=76.6
Q ss_pred hhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC------------CCchHHHHHHH
Q 001340 690 CNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQ------------GTSDEYVDELR 757 (1096)
Q Consensus 690 l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~------------~e~ee~~~el~ 757 (1096)
|-.+.-+|..+..+...|++-+...+.-+..|+.+++.++..+-...| .....+.. ......+.+.+
T Consensus 176 ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~re-r~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k 254 (1072)
T KOG0979|consen 176 LLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRE-RERKKSKIELLEKKKKWVEYKKHDREYNAYK 254 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccchHhhhHHHHHHH
Confidence 444555566666777777777777777777777777777666632222 00000000 11122222333
Q ss_pred HHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001340 758 KKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESM 837 (1096)
Q Consensus 758 ~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~ 837 (1096)
+....-++++.++..+..-+..-+..|+.+...+..+-+.....+..+.......-+.+.....+...+-.+++.+|-..
T Consensus 255 ~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~ 334 (1072)
T KOG0979|consen 255 QAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAA 334 (1072)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455554444444444444555445555555555555555544444444444444444444555555555555
Q ss_pred HHHHHHH
Q 001340 838 HSRGAAM 844 (1096)
Q Consensus 838 ~~~e~qi 844 (1096)
.+....|
T Consensus 335 ~~rq~~i 341 (1072)
T KOG0979|consen 335 EKRQKRI 341 (1072)
T ss_pred HHHHHHH
Confidence 5555444
No 210
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=92.92 E-value=52 Score=45.52 Aligned_cols=44 Identities=23% Similarity=0.407 Sum_probs=27.1
Q ss_pred HHHHHHHhhHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 612 MLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRI 663 (1096)
Q Consensus 612 ~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~Q~qkL~~elrdKeeei~~L~qki 663 (1096)
.-.|.-|....-..|+.|.. .++..|..++..+..++..|.+++
T Consensus 729 ~~IG~~aR~~~R~~ri~el~--------~~IaeL~~~i~~l~~~l~~l~~r~ 772 (1353)
T TIGR02680 729 EYIGAAARERARLRRIAELD--------ARLAAVDDELAELARELRALGARQ 772 (1353)
T ss_pred hHhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666555554 445666666666666666666665
No 211
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.91 E-value=8.7 Score=49.19 Aligned_cols=76 Identities=14% Similarity=0.209 Sum_probs=49.7
Q ss_pred HHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHH
Q 001340 701 SADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSE 779 (1096)
Q Consensus 701 ~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~E 779 (1096)
..|.+.++++|+.....+.++..+++..+.++. .-+ +.......-.+.....++..|.+|-++|+++-++.+.+..
T Consensus 638 ~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~-~~~--~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 638 KKELERMKDQLQDLKASIEQLKKKLDYQQRQIE-SQK--SPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc--cccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777777778888777776663 111 1122222445666677788888888888888777666543
No 212
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=92.89 E-value=0.21 Score=59.82 Aligned_cols=89 Identities=24% Similarity=0.385 Sum_probs=57.1
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccCCC---CCCCCchH----HHHHHHHHHhh
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGD---QNSPGIIP----LAIKDVFSIIQ 213 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~---~~~~GIip----r~~~~LF~~i~ 213 (1096)
.|....-|.|.-+|-.- ...||+.+-.|...-+ -.|.|||||||||-.- -.-|-||- -...+||+...
T Consensus 4 ~F~l~s~f~PaGDQP~A----I~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 4 PFKLHSPFKPAGDQPEA----IAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred ceEeccCCCCCCCcHHH----HHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHH
Confidence 46667778888888653 3457777766665544 4699999999999641 11121111 13455666555
Q ss_pred c-CCCCeeEEEEeeeeeeccee
Q 001340 214 D-TPGREFLLRVSYLEIYNEVI 234 (1096)
Q Consensus 214 ~-~~~~~~~v~vS~lEIYnE~i 234 (1096)
+ -|+..+.-.|||+..|.-..
T Consensus 79 ~fFP~NaVEYFVSYYDYYQPEA 100 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQPEA 100 (663)
T ss_pred HhCcCcceEEEeeeccccCccc
Confidence 4 36666777899999886543
No 213
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=92.73 E-value=11 Score=43.05 Aligned_cols=64 Identities=23% Similarity=0.292 Sum_probs=49.5
Q ss_pred HhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001340 779 EENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGA 842 (1096)
Q Consensus 779 Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~ 842 (1096)
-|..+|..++++|..+-.-..+++...+.....|-+=+.++..+|++|+-.|.+.+.+..+-+.
T Consensus 99 ~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekee 162 (401)
T PF06785_consen 99 QESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEE 162 (401)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHH
Confidence 4556677777777777777778888888888888888888889999998888888766654443
No 214
>PF04641 Rtf2: Rtf2 RING-finger
Probab=92.64 E-value=0.072 Score=59.63 Aligned_cols=46 Identities=17% Similarity=0.447 Sum_probs=36.8
Q ss_pred Ccccccccccccc----cceEEeCCCCcccchhhhhcCC---CCCCCcccccce
Q 001340 1045 PNSHMCKVCFESP----TAAILLPCRHFCLCKSCSLACS---ECPICRTKISDR 1091 (1096)
Q Consensus 1045 ~~~~~C~IC~~~~----~~~vl~pCgH~~~C~~C~~~~~---~CPiCr~~i~~~ 1091 (1096)
.....|+|+.... ..++|.||||. ||..|...+. .||+|..+|...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELKKSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhcccccccccCCccccC
Confidence 3556899998644 56888899998 9999977765 699999997643
No 215
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.53 E-value=0.92 Score=56.42 Aligned_cols=50 Identities=34% Similarity=0.480 Sum_probs=34.3
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
..|+||..+-. ..+..+|. .+..+++..-.+||. ||-||.+|+||||-+.
T Consensus 283 ~~~TFDnFvvG-~sN~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~ 332 (617)
T PRK14086 283 PKYTFDTFVIG-ASNRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLH 332 (617)
T ss_pred CCCCHhhhcCC-CccHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHH
Confidence 45899875532 34455553 445555544456776 8999999999999885
No 216
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.52 E-value=6.9 Score=47.98 Aligned_cols=72 Identities=18% Similarity=0.245 Sum_probs=51.1
Q ss_pred HHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhh------HHHHHH---------HHhHHHHHHHHHhhhHHHHHHHHHH
Q 001340 661 QRIIENGEASMANASMVDMQQTVTRLMSQCNEKA------FELEIK---------SADNRILQEQLQNKCSENKKLQEKV 725 (1096)
Q Consensus 661 qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~------~ele~k---------~ae~~~lqeqL~~a~~e~~~L~~~l 725 (1096)
..|.+.+...--..|++.+...+.++-+.++-.. +-.++| ..++..-++-|.+|---|..+..++
T Consensus 282 e~I~~lG~PvvVAtDVtp~P~~V~KiAasf~A~ly~P~~dLsveEK~~~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl 361 (652)
T COG2433 282 EFISELGKPVVVATDVTPAPETVKKIAASFNAVLYTPDRDLSVEEKQEALRTLKISVSDDHERDALAAAYKAYLAYKPKL 361 (652)
T ss_pred HHHHHcCCceEEEccCCCChHHHHHHHHHcCCcccCCcccCCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 3455555554444567777888888888777443 233333 2366777888999999999999999
Q ss_pred HHHHHHH
Q 001340 726 NLLEQQL 732 (1096)
Q Consensus 726 ~~lk~~l 732 (1096)
-..+..+
T Consensus 362 ~~vEr~~ 368 (652)
T COG2433 362 EKVERKL 368 (652)
T ss_pred HHHHHhc
Confidence 9999888
No 217
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.44 E-value=40 Score=42.92 Aligned_cols=84 Identities=15% Similarity=0.143 Sum_probs=49.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHH
Q 001340 638 SKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSE 717 (1096)
Q Consensus 638 ~~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e 717 (1096)
...+++.|..++++...+++.+.+.+. .++.++..+...+++..-+++. +-..+.++.++.+.+
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~-------------~l~~ele~a~~~l~~l~~~~~~---~GG~~~~~r~~Le~e 270 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIA-------------HLRNELEEAQRSLESLEKKFRS---EGGDLFEEREQLERQ 270 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH---hcchHHHHHHHHHHH
Confidence 334566677777776666666666554 3444455554444443333332 233455556677777
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 001340 718 NKKLQEKVNLLEQQLACQNG 737 (1096)
Q Consensus 718 ~~~L~~~l~~lk~~l~~~~e 737 (1096)
+..+++++...+.++.+...
T Consensus 271 i~~le~e~~e~~~~l~~l~~ 290 (650)
T TIGR03185 271 LKEIEAARKANRAQLRELAA 290 (650)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 77788888888877755443
No 218
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.29 E-value=19 Score=38.91 Aligned_cols=121 Identities=26% Similarity=0.315 Sum_probs=64.1
Q ss_pred HHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001340 696 ELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHV 775 (1096)
Q Consensus 696 ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~ 775 (1096)
.+....++|..|.+-|..+..+..+|++++......-. .+..+++++.....++..++.+..
T Consensus 49 ~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~------------------~L~~~k~rl~~~ek~l~~Lk~e~e 110 (201)
T PF13851_consen 49 LMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQ------------------SLQNLKARLKELEKELKDLKWEHE 110 (201)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444678888999999999999999988887666541 122233333333334444444333
Q ss_pred HhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001340 776 QLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTV 847 (1096)
Q Consensus 776 ~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qiq~v 847 (1096)
. |..+..++..|-.--...|.++-.+. -.|....|--|+..|....+..-..++|+..|
T Consensus 111 v-------L~qr~~kle~ErdeL~~kf~~~i~ev------qQk~~~kn~lLEkKl~~l~~~lE~keaqL~ev 169 (201)
T PF13851_consen 111 V-------LEQRFEKLEQERDELYRKFESAIQEV------QQKTGLKNLLLEKKLQALSEQLEKKEAQLNEV 169 (201)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33333333333222222333321111 12333445556666666666666666666433
No 219
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=92.28 E-value=16 Score=43.98 Aligned_cols=89 Identities=22% Similarity=0.227 Sum_probs=43.3
Q ss_pred HHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---hhcCCC-CCCCCCCCC-chHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001340 701 SADNRILQEQLQNKCSENKKLQEKVNLLEQQLA---CQNGDK-SAGSSGQGT-SDEYVDELRKKVQSQETENEKLKLEHV 775 (1096)
Q Consensus 701 ~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~---~~~e~~-~~~~~~~~e-~ee~~~el~~~~~~Q~~Eie~lk~e~~ 775 (1096)
..+|+.|.+|++..=.++..|++++-+--..+. .+.+.. .+..++... ..+ ....-|-...|.|....+
T Consensus 96 q~~nesLeEqv~~~~d~vvql~hels~k~ellr~ys~~~ees~~~~v~~~P~~~~~------s~S~~~~~~~EaL~ekLk 169 (596)
T KOG4360|consen 96 QEDNESLEEQVDAPWDRVVQLGHELSRKDELLRGYSAAIEESEAASVCSTPLVSNE------SRSAFQRELLEALQEKLK 169 (596)
T ss_pred hhhhhhhHhhhcchHHHHHHhhhhhhhhhhhhheeeeccccccccccccCCCccCc------chhhHHHHHHHHHHhhcC
Confidence 346777888887777777777766654433331 111111 000111110 000 011112233355666666
Q ss_pred HhHHhhhhHHHHHHHHHHHh
Q 001340 776 QLSEENSGLHVQNQKLAEEA 795 (1096)
Q Consensus 776 ~L~Ee~~~L~~e~~kl~~e~ 795 (1096)
.+.+||.+|.++-..+.-|.
T Consensus 170 ~~~een~~lr~k~~llk~Et 189 (596)
T KOG4360|consen 170 PLEEENTQLRSKAMLLKTET 189 (596)
T ss_pred ChHHHHHHHHHHHHHHHhhh
Confidence 77777777777755554443
No 220
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=92.24 E-value=15 Score=46.33 Aligned_cols=82 Identities=21% Similarity=0.243 Sum_probs=42.8
Q ss_pred HHHHHHHhhHHHHHHHHHH----HHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001340 755 ELRKKVQSQETENEKLKLE----HVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 830 (1096)
Q Consensus 755 el~~~~~~Q~~Eie~lk~e----~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~El 830 (1096)
||-+....|+.|..+|-.. =..|.+.++....++.++.-|..-+.--++.+.-.|+.--+|-.-|-...+|-.+|+
T Consensus 459 ellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi 538 (861)
T PF15254_consen 459 ELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEI 538 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHH
Confidence 4444555666666666332 345666666677776666665555544444444444444444444444444444444
Q ss_pred HHHHHH
Q 001340 831 LAARES 836 (1096)
Q Consensus 831 e~~k~~ 836 (1096)
..+++.
T Consensus 539 ~RL~eL 544 (861)
T PF15254_consen 539 ERLREL 544 (861)
T ss_pred HHHHHH
Confidence 444433
No 221
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.22 E-value=19 Score=38.73 Aligned_cols=85 Identities=20% Similarity=0.169 Sum_probs=40.7
Q ss_pred HHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001340 759 KVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAA--VELKNLAGEVTKLSLQNAKLEKELLAARES 836 (1096)
Q Consensus 759 ~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~--~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~ 836 (1096)
.+..-..|+..|+.......+....+..++.....+..-.++-...+. ++-++|.+ .++|......+...|+.....
T Consensus 62 ll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~e-ReeL~~kL~~~~~~l~~~~~k 140 (194)
T PF15619_consen 62 LLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAE-REELQRKLSQLEQKLQEKEKK 140 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555554444444443333333333321 22234443 456666666666666666655
Q ss_pred HHHHHHHH
Q 001340 837 MHSRGAAM 844 (1096)
Q Consensus 837 ~~~~e~qi 844 (1096)
+...+.++
T Consensus 141 i~~Lek~l 148 (194)
T PF15619_consen 141 IQELEKQL 148 (194)
T ss_pred HHHHHHHH
Confidence 55555444
No 222
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=92.21 E-value=4.3 Score=46.60 Aligned_cols=89 Identities=26% Similarity=0.281 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001340 751 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 830 (1096)
Q Consensus 751 e~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~El 830 (1096)
+++.-+.+.+.+-..|+|.||.-...|.+..+.|+.....+.-++....+.---....-..|+.-+.....+|.+|..|+
T Consensus 9 eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev 88 (319)
T PF09789_consen 9 EALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEV 88 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 45666677788888999999999999999999999887665521111100000000133444445555555555555555
Q ss_pred HHHHHHHHH
Q 001340 831 LAARESMHS 839 (1096)
Q Consensus 831 e~~k~~~~~ 839 (1096)
...+..+.+
T Consensus 89 ~~Lrqkl~E 97 (319)
T PF09789_consen 89 EELRQKLNE 97 (319)
T ss_pred HHHHHHHHH
Confidence 555544443
No 223
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.18 E-value=28 Score=40.56 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=61.1
Q ss_pred CchhhHHHHHHHHHHHHHHHhhHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHH
Q 001340 599 TSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVD 678 (1096)
Q Consensus 599 ~~d~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e 678 (1096)
..=|+|.++-|+.-++.|+..-...+.. ..+.-++...++..-.++-+.+.++...... ....
T Consensus 72 gVfqlddi~~qlr~~rtel~~a~~~k~~-----------~e~er~~~~~El~~~r~e~~~v~~~~~~a~~------n~~k 134 (499)
T COG4372 72 GVFQLDDIRPQLRALRTELGTAQGEKRA-----------AETEREAARSELQKARQEREAVRQELAAARQ------NLAK 134 (499)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH
Confidence 3456777778888777777665544430 0122223444444444444444444433222 2224
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 679 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 679 ~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.+|.+.++..+-...--+|.-.+++-+.|..|++..-++...|+.-+..||.+.
T Consensus 135 AqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~ 188 (499)
T COG4372 135 AQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQV 188 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666555544444444455666666666666666666665555555544
No 224
>PRK06893 DNA replication initiation factor; Validated
Probab=92.12 E-value=0.14 Score=56.16 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=33.1
Q ss_pred CcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 139 ATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 139 ~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
...++||..+... +..-+ ..+...+-.++|..++-||++|+||||-+.
T Consensus 10 ~~~~~fd~f~~~~-~~~~~-----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 10 IDDETLDNFYADN-NLLLL-----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred CCcccccccccCC-hHHHH-----HHHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence 4568999988644 32222 222333345788889999999999999875
No 225
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.07 E-value=0.018 Score=65.01 Aligned_cols=42 Identities=29% Similarity=0.826 Sum_probs=32.3
Q ss_pred ccccccccccceE-EeCCCCcccchhhhhcC-----CCCCCCcccccce
Q 001340 1049 MCKVCFESPTAAI-LLPCRHFCLCKSCSLAC-----SECPICRTKISDR 1091 (1096)
Q Consensus 1049 ~C~IC~~~~~~~v-l~pCgH~~~C~~C~~~~-----~~CPiCr~~i~~~ 1091 (1096)
.|.||++--+.+| ..-|.|. ||..|.... ..||.||+.....
T Consensus 45 ~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 45 ICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred ccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 7999999655444 4579999 999995433 5699999986654
No 226
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=91.97 E-value=0.037 Score=67.59 Aligned_cols=46 Identities=20% Similarity=0.532 Sum_probs=35.5
Q ss_pred cccccccccccceEE---eCCCCcccchhhhhcC----CCCCCCcccccceeec
Q 001340 1048 HMCKVCFESPTAAIL---LPCRHFCLCKSCSLAC----SECPICRTKISDRLFA 1094 (1096)
Q Consensus 1048 ~~C~IC~~~~~~~vl---~pCgH~~~C~~C~~~~----~~CPiCr~~i~~~i~i 1094 (1096)
..|.+|+....+-.+ .+|+|. ||..|.... ..||+||..|..++..
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKVL 176 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeeee
Confidence 379999876665544 499999 999994433 5699999999987753
No 227
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=91.84 E-value=19 Score=44.92 Aligned_cols=32 Identities=31% Similarity=0.290 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001340 805 AAVELKNLAGEVTKLSLQNAKLEKELLAARES 836 (1096)
Q Consensus 805 a~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~ 836 (1096)
++.-+....+.+.||..++.++..||..++..
T Consensus 154 aee~~~~~eer~~kl~~~~qe~naeL~rarqr 185 (916)
T KOG0249|consen 154 AEEHSGNIEERTRKLEEQLEELNAELQRARQR 185 (916)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566777888888888888888776633
No 228
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.74 E-value=44 Score=41.95 Aligned_cols=99 Identities=19% Similarity=0.279 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHHHHHhhHHH---HHHHh-hhccCCCCC---------chHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 001340 602 QMDLLVEQVKMLAGEIAFSSSN---LKRLV-DQSVNDPDG---------SKVQIQNLEREIQEKRRQMRILEQRIIE--- 665 (1096)
Q Consensus 602 ~~d~l~eq~k~l~~e~a~~~~~---Lk~l~-e~~~~~~~~---------~~~Q~qkL~~elrdKeeei~~L~qki~~--- 665 (1096)
+.|.|++|+..-.+++.-+... |+++. |+...++.+ +..-++.|..+-......++.|.-|+..
T Consensus 198 e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~ 277 (739)
T PF07111_consen 198 EADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSLTD 277 (739)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999888444 45555 554322221 0112445555555555555666666621
Q ss_pred --------hcccCCCcch-hHHHHHHHHHHHHhhhhhhHHHHHH
Q 001340 666 --------NGEASMANAS-MVDMQQTVTRLMSQCNEKAFELEIK 700 (1096)
Q Consensus 666 --------s~~~s~~~~~-~~e~~~~v~~L~~~l~e~~~ele~k 700 (1096)
.....++... -.+-......|+.-..+|.|.|-|.
T Consensus 278 IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQ 321 (739)
T PF07111_consen 278 ILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQ 321 (739)
T ss_pred HHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 1112221100 0123334445666667777777764
No 229
>PRK06620 hypothetical protein; Validated
Probab=91.70 E-value=0.12 Score=56.27 Aligned_cols=51 Identities=25% Similarity=0.310 Sum_probs=33.8
Q ss_pred CCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCc---eeEEeeccCCCCcccccC
Q 001340 138 PATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN---GTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 138 ~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N---~tIfaYGqTgSGKT~Tm~ 192 (1096)
....|+||..+. ..++...|..+.. +.+. -|+| -.+|-||++|+||||.+.
T Consensus 9 ~~~~~tfd~Fvv-g~~N~~a~~~~~~-~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 9 TSSKYHPDEFIV-SSSNDQAYNIIKN-WQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCCchhhEe-cccHHHHHHHHHH-HHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 345689998764 4455667764332 3221 1444 358999999999999986
No 230
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.61 E-value=8 Score=45.38 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 001340 715 CSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 715 ~~e~~~L~~~l~~lk~~l 732 (1096)
..|+..|+.....|+++.
T Consensus 249 kqEnlqLvhR~h~LEEq~ 266 (502)
T KOG0982|consen 249 KQENLQLVHRYHMLEEQR 266 (502)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346666777777777766
No 231
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.44 E-value=0.093 Score=60.31 Aligned_cols=41 Identities=29% Similarity=0.775 Sum_probs=30.8
Q ss_pred cccccccccc---ceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001340 1049 MCKVCFESPT---AAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1090 (1096)
Q Consensus 1049 ~C~IC~~~~~---~~vl~pCgH~~~C~~C~~~~-----~~CPiCr~~i~~ 1090 (1096)
.|.||++... .+.++||.|- |=..|...- ..||+|+..|..
T Consensus 231 ~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred eEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCC
Confidence 8999999553 4667899999 777784332 339999997754
No 232
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=91.39 E-value=22 Score=40.64 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001340 801 LASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTV 847 (1096)
Q Consensus 801 la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qiq~v 847 (1096)
+...+..+-+.|..++++++..-..|.+|++.+|+-+...|+..|..
T Consensus 246 ~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~ 292 (561)
T KOG1103|consen 246 LIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHL 292 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 44566777777888888888888888889999998888887766543
No 233
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.37 E-value=0.34 Score=58.24 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=26.9
Q ss_pred hHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 162 ARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 162 ~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
....+..++..-+|.|+.-|+||||||.||+
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY 276 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLY 276 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence 3445677888999999999999999999997
No 234
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=91.30 E-value=48 Score=41.48 Aligned_cols=49 Identities=22% Similarity=0.188 Sum_probs=30.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001340 681 QTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLE 729 (1096)
Q Consensus 681 ~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk 729 (1096)
|.+.++..+++-...+|..++++..-+-.+-+.++.+..+|.+.|+.-.
T Consensus 370 qr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~q 418 (786)
T PF05483_consen 370 QRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQ 418 (786)
T ss_pred HHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3444455566666666666666666666666667777666666655544
No 235
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=91.26 E-value=78 Score=43.88 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=13.4
Q ss_pred eEEeeccCCCCcccccC
Q 001340 176 TVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 176 tIfaYGqTgSGKT~Tm~ 192 (1096)
.++-.|++|||||.+|-
T Consensus 26 ~~~~~G~NGsGKS~~ld 42 (1353)
T TIGR02680 26 RLLLRGNNGAGKSKVLE 42 (1353)
T ss_pred eEEEECCCCCcHHHHHH
Confidence 34556999999998873
No 236
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.17 E-value=12 Score=44.86 Aligned_cols=29 Identities=34% Similarity=0.386 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 704 NRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 704 ~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.++||+.|...+.+|..|+.|.+.++...
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et 189 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTET 189 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhh
Confidence 45799999999999999999999998765
No 237
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=91.13 E-value=0.063 Score=69.62 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Q 001340 808 ELKNLAGEVTKLSLQNAKLEKELLA 832 (1096)
Q Consensus 808 qlk~l~~ev~kL~~~n~qL~~Ele~ 832 (1096)
++++.-..+..|.....+|..|++.
T Consensus 336 ~le~~~~~~~~LeK~k~rL~~EleD 360 (859)
T PF01576_consen 336 QLEEANAKVSSLEKTKKRLQGELED 360 (859)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 238
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.13 E-value=62 Score=42.50 Aligned_cols=116 Identities=11% Similarity=0.172 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHH
Q 001340 675 SMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVD 754 (1096)
Q Consensus 675 ~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~ 754 (1096)
+++-+.+++.++...++.+.-++++.--+......+|..-+..+.+.+++|.. +..+-+..+.-.-.+.+..+.+..+.
T Consensus 235 els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~i~ 313 (1141)
T KOG0018|consen 235 ELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE-RPELIKVKENASHLKKRLEEIEKDIE 313 (1141)
T ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHHHhhhhHH
Confidence 55566777777888888777777777666666666666666666666666666 32332222211111111122223333
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHH
Q 001340 755 ELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKL 791 (1096)
Q Consensus 755 el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl 791 (1096)
..+..+..+.++|++++.+...+.--...+..+++.-
T Consensus 314 ~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~ 350 (1141)
T KOG0018|consen 314 TAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEER 350 (1141)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777766666666665555443
No 239
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.04 E-value=23 Score=39.74 Aligned_cols=142 Identities=22% Similarity=0.282 Sum_probs=82.4
Q ss_pred HHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001340 760 VQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHS 839 (1096)
Q Consensus 760 ~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~ 839 (1096)
+..|-.++..+..++..++.+...|..+.+.+.. +.+++-++++++..+..+|..+++..++.+..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~--------------k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQS--------------KIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777788888888888888888888888777 34444445555555555555555555555554
Q ss_pred HHHHH------HHhhhhhhhhhhhhhhhc--cccccCccccccCcccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 001340 840 RGAAM------QTVNGVNRKYSDGMKAGR--KGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAE 911 (1096)
Q Consensus 840 ~e~qi------q~v~~dar~~lq~l~~~~--~e~l~~~~~~~~~~~~~~~~~~w~~~~~~K~e~~a~~erq~aLE~el~~ 911 (1096)
+...+ ..+++.+-.|+..|-..- .|-+.+. .....-.+....-...+|.|.....+.+.+++.++..
T Consensus 99 r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRv-----tAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~ 173 (265)
T COG3883 99 RQELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRV-----TAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLET 173 (265)
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHH-----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 344555556776533211 1111110 0000111222334566788888888888888887776
Q ss_pred HHHhHHHHH
Q 001340 912 KEFLEDEYR 920 (1096)
Q Consensus 912 k~~~eeEl~ 920 (1096)
...+..|+.
T Consensus 174 l~al~~e~e 182 (265)
T COG3883 174 LVALQNELE 182 (265)
T ss_pred HHHHHHHHH
Confidence 666666655
No 240
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=91.00 E-value=27 Score=43.66 Aligned_cols=27 Identities=33% Similarity=0.288 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001340 808 ELKNLAGEVTKLSLQNAKLEKELLAAR 834 (1096)
Q Consensus 808 qlk~l~~ev~kL~~~n~qL~~Ele~~k 834 (1096)
.++.|.+++.++..+...+..+|...+
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls~~R 373 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALSLIR 373 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 241
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.89 E-value=68 Score=42.54 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=16.9
Q ss_pred eeEEeeccCCCCcccc-------cCCCCCCCC
Q 001340 175 GTVFAYGVTSSGKTHT-------MHGDQNSPG 199 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~T-------m~G~~~~~G 199 (1096)
+..+-+|+||||||.- +||.....|
T Consensus 26 gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~ 57 (908)
T COG0419 26 GIFLIVGPNGAGKSSILDAITFALYGKTPRLG 57 (908)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc
Confidence 4556789999999754 466554333
No 242
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=90.83 E-value=24 Score=37.16 Aligned_cols=89 Identities=21% Similarity=0.274 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHH
Q 001340 638 SKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSE 717 (1096)
Q Consensus 638 ~~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e 717 (1096)
+++.++.|..+|.+++.++-.|-.++..... -.+-+...+.-+..++....-++.........++++|.....+
T Consensus 47 Lkien~~l~~kIeERn~eL~~Lk~~~~~~v~------~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~ 120 (177)
T PF13870_consen 47 LKIENQQLNEKIEERNKELLKLKKKIGKTVQ------ILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKE 120 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999888753221 1112233333344444444444455555666666666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 001340 718 NKKLQEKVNLLEQQL 732 (1096)
Q Consensus 718 ~~~L~~~l~~lk~~l 732 (1096)
...+++.+..++.+.
T Consensus 121 r~k~~~~~~~l~~~~ 135 (177)
T PF13870_consen 121 RDKLRKQNKKLRQQG 135 (177)
T ss_pred HHHHHHHHHHHHHhc
Confidence 666666666666665
No 243
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.79 E-value=0.083 Score=66.29 Aligned_cols=40 Identities=28% Similarity=0.859 Sum_probs=34.0
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC------CCCCCCccccc
Q 001340 1048 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC------SECPICRTKIS 1089 (1096)
Q Consensus 1048 ~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~------~~CPiCr~~i~ 1089 (1096)
..|.+|.+ ...+++.+|+|. +|..|.... ..||+||..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHH
Confidence 37999999 899999999999 999995443 46999998764
No 244
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.66 E-value=4.6 Score=40.59 Aligned_cols=80 Identities=25% Similarity=0.288 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001340 752 YVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAK----ELASAAAVELKNLAGEVTKLSLQNAKLE 827 (1096)
Q Consensus 752 ~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k----~la~aa~~qlk~l~~ev~kL~~~n~qL~ 827 (1096)
|-.|+..+... +.++..++.+...+..+...|..+.+.+...-.... ..=..+..++..+-.++..|..||.-|-
T Consensus 47 YE~El~~Ha~~-~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh 125 (132)
T PF07926_consen 47 YERELVKHAED-IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLH 125 (132)
T ss_pred HHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344433333 445555555555555555555555444433222222 2223366667777778888888887777
Q ss_pred HHHHH
Q 001340 828 KELLA 832 (1096)
Q Consensus 828 ~Ele~ 832 (1096)
..|+.
T Consensus 126 ~QlE~ 130 (132)
T PF07926_consen 126 DQLES 130 (132)
T ss_pred HHHhh
Confidence 66653
No 245
>PF13514 AAA_27: AAA domain
Probab=90.59 E-value=81 Score=42.86 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=69.9
Q ss_pred HhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC--CCCchHHHHHHHHHHHhhHH
Q 001340 688 SQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSG--QGTSDEYVDELRKKVQSQET 765 (1096)
Q Consensus 688 ~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~--~~e~ee~~~el~~~~~~Q~~ 765 (1096)
....+..-.++....+...++.++...+.+...++..+...+.+....+. .-..... .....+.+..+. .+.....
T Consensus 666 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~-~~gL~~~~~~~~~~~~l~~l~-~l~~~~~ 743 (1111)
T PF13514_consen 666 EEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALA-ELGLPADASPEEALEALELLE-ELREALA 743 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCHHHHHHHHHHHH-HHHHHHH
Confidence 33333333333334445555555555666666666666666666543333 1111111 111222222222 3444455
Q ss_pred HHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhH------HHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHH
Q 001340 766 ENEKLKLEHVQLSEENSGLHVQNQKLAEEASY------AKELASAAAVELKNL---AGEVTKLSLQNAKLEKELLAARES 836 (1096)
Q Consensus 766 Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~------~k~la~aa~~qlk~l---~~ev~kL~~~n~qL~~Ele~~k~~ 836 (1096)
+++.+...+..+..+...+..+...|...... .-+.+..+...++.. ..++.++..+...++.++...+..
T Consensus 744 ~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~ 823 (1111)
T PF13514_consen 744 EIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEE 823 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666665555543221 012333332222222 233444444555555555555555
Q ss_pred HHHHHHHH
Q 001340 837 MHSRGAAM 844 (1096)
Q Consensus 837 ~~~~e~qi 844 (1096)
+..++.++
T Consensus 824 l~~~~~~l 831 (1111)
T PF13514_consen 824 LEELEAEL 831 (1111)
T ss_pred HHHHHHHH
Confidence 55555554
No 246
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.32 E-value=36 Score=44.08 Aligned_cols=19 Identities=32% Similarity=0.379 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001340 645 LEREIQEKRRQMRILEQRI 663 (1096)
Q Consensus 645 L~~elrdKeeei~~L~qki 663 (1096)
|..++.+.+.+++..+.++
T Consensus 199 L~~ql~~l~~~l~~aE~~l 217 (754)
T TIGR01005 199 LAPEIADLSKQSRDAEAEV 217 (754)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 247
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=90.29 E-value=8.2 Score=43.49 Aligned_cols=118 Identities=22% Similarity=0.235 Sum_probs=87.8
Q ss_pred HHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 001340 698 EIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQL 777 (1096)
Q Consensus 698 e~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L 777 (1096)
++=..||++|..--.++-+|++.|-+.|..|++.+ |. ...+. + -+.+|.+....|
T Consensus 17 EIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEai---La-----------gGaaa---N--------avrdYqrq~~el 71 (351)
T PF07058_consen 17 EICQEENKILDKMHRQKVLEVEKLSQTIRELEEAI---LA-----------GGAAA---N--------AVRDYQRQVQEL 71 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh-----------cchHH---H--------HHHHHHHHHHHH
Confidence 35567889998888999999999999999999988 11 11111 1 237899999999
Q ss_pred HHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHH----------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 778 SEENSGLHVQNQKLAEEASYAKELASAAAVELKN----------LAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 844 (1096)
Q Consensus 778 ~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~----------l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qi 844 (1096)
.||+..|+.++.++-- ++.-.|...+-|+|| +.+|-.-|+.+.+||++.|..+... +..|+|+
T Consensus 72 neEkrtLeRELARaKV---~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERt-AkaEaQL 144 (351)
T PF07058_consen 72 NEEKRTLERELARAKV---SANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERT-AKAEAQL 144 (351)
T ss_pred HHHHHHHHHHHHHhhh---hhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 9999999999877654 667777777778877 6777777888888888887755533 2344444
No 248
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=90.00 E-value=18 Score=42.84 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=40.4
Q ss_pred HHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 001340 686 LMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLAC 734 (1096)
Q Consensus 686 L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~ 734 (1096)
+..+++|.-++++.-++|.+.+|.|.....+++.+++...-.|.++...
T Consensus 307 s~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~ 355 (554)
T KOG4677|consen 307 SRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQT 355 (554)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Confidence 4566777777777778999999999999999999999998888777643
No 249
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.96 E-value=1.5 Score=46.85 Aligned_cols=55 Identities=27% Similarity=0.354 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 678 e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
++..++..|...+.....+++++...+..+++.+.....++..+++++..|+..-
T Consensus 120 ~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En 174 (194)
T PF08614_consen 120 ELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEEN 174 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666777777777777777777777777777777776665
No 250
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.95 E-value=0.18 Score=56.76 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=28.0
Q ss_pred hHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 162 ARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 162 ~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
..|+|..+.+--+|.|+..|+||||||.||-
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 4678888999999999999999999999984
No 251
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.89 E-value=0.14 Score=59.17 Aligned_cols=46 Identities=26% Similarity=0.606 Sum_probs=35.6
Q ss_pred ccccccccccccceE-----E---eCCCCcccchhhhhc-----------CCCCCCCcccccceee
Q 001340 1047 SHMCKVCFESPTAAI-----L---LPCRHFCLCKSCSLA-----------CSECPICRTKISDRLF 1093 (1096)
Q Consensus 1047 ~~~C~IC~~~~~~~v-----l---~pCgH~~~C~~C~~~-----------~~~CPiCr~~i~~~i~ 1093 (1096)
..+|.||++.-...+ | -+|-|. ||-.|... .+.||+||.+...++.
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 458999999776666 4 679999 99999432 2559999998876654
No 252
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=89.89 E-value=5 Score=44.00 Aligned_cols=53 Identities=19% Similarity=0.203 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 680 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 680 ~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.-.|.-|+.......-++++.+.-+.+|=-||..++-|..++-..|..||+++
T Consensus 107 ~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq 159 (330)
T KOG2991|consen 107 SDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQ 159 (330)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555556666778888899999999999999999999998
No 253
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.85 E-value=3.2 Score=37.15 Aligned_cols=20 Identities=45% Similarity=0.458 Sum_probs=13.9
Q ss_pred HHHHhhHHHHHHHHHHHHHH
Q 001340 815 EVTKLSLQNAKLEKELLAAR 834 (1096)
Q Consensus 815 ev~kL~~~n~qL~~Ele~~k 834 (1096)
++.+|..++..|+.||+..+
T Consensus 48 e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 48 ENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 77777777777777765543
No 254
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=89.85 E-value=15 Score=40.25 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 001340 807 VELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSD 856 (1096)
Q Consensus 807 ~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qiq~v~~dar~~lq 856 (1096)
.-++|+-.++++....|+-|+.||..+.-.+ ..+|-+.|+||..-|
T Consensus 133 ~sleDfeqrLnqAIErnAfLESELdEke~ll----esvqRLkdEardlrq 178 (333)
T KOG1853|consen 133 YSLEDFEQRLNQAIERNAFLESELDEKEVLL----ESVQRLKDEARDLRQ 178 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHH
Confidence 3456666666666666777777665544222 223555555544444
No 255
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.62 E-value=40 Score=37.89 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=26.5
Q ss_pred HHHhhHHHHHHHHHHHHHhHHhhhhH-------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 001340 759 KVQSQETENEKLKLEHVQLSEENSGL-------HVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLS 820 (1096)
Q Consensus 759 ~~~~Q~~Eie~lk~e~~~L~Ee~~~L-------~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~ 820 (1096)
.+..|+.+=..|+..+..|.+.+..| +..+..|...-.-.++++.+++........+..-|.
T Consensus 149 ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 149 ILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33444444444444444444433332 223334444444444444444444444444444443
No 256
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=89.58 E-value=50 Score=38.91 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHhhhccCCCC-CchHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCC
Q 001340 601 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPD-GSKVQIQNLEREIQEKRRQMR-ILEQRIIENGEASMA 672 (1096)
Q Consensus 601 d~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~-~~~~Q~qkL~~elrdKeeei~-~L~qki~~s~~~s~~ 672 (1096)
.-+.-|..+-|-|.+|+...+.--|-+.|+...+-. +..+| .+-..-++.|. .|+++|.........
T Consensus 50 ~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQ-----araeqeeEfisntLlkkiqal~keket 118 (552)
T KOG2129|consen 50 ARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQ-----ARAEQEEEFISNTLLKKIQALFKEKET 118 (552)
T ss_pred HHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHh-----hccchHHHHHHHHHHHHHHHhhccccc
Confidence 446778888889999988877777767776654211 11122 22233456777 899999766554433
No 257
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=89.57 E-value=32 Score=36.68 Aligned_cols=91 Identities=23% Similarity=0.271 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHH
Q 001340 642 IQNLEREIQEKRRQMRILEQRIIENGE---ASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSEN 718 (1096)
Q Consensus 642 ~qkL~~elrdKeeei~~L~qki~~s~~---~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~ 718 (1096)
+++|+.++..-+..+..|++++..... .++......+.+..+..+...|+|.-..-+..+.-|..|++||..+...+
T Consensus 18 v~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N 97 (182)
T PF15035_consen 18 VQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKAN 97 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999954311 11101111233445555666666665556666778899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 001340 719 KKLQEKVNLLEQQL 732 (1096)
Q Consensus 719 ~~L~~~l~~lk~~l 732 (1096)
..|..+|..+..+.
T Consensus 98 ~~L~~dl~klt~~~ 111 (182)
T PF15035_consen 98 EALQEDLQKLTQDW 111 (182)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999988
No 258
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.42 E-value=0.1 Score=61.07 Aligned_cols=41 Identities=29% Similarity=0.855 Sum_probs=30.9
Q ss_pred cccccccc-----------------cccceEEeCCCCcccchhhhhc-C---C-CCCCCccccc
Q 001340 1048 HMCKVCFE-----------------SPTAAILLPCRHFCLCKSCSLA-C---S-ECPICRTKIS 1089 (1096)
Q Consensus 1048 ~~C~IC~~-----------------~~~~~vl~pCgH~~~C~~C~~~-~---~-~CPiCr~~i~ 1089 (1096)
..|+|||. ..++.|+.||-|. |-..|-.. | + .||+||.++.
T Consensus 572 ~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 572 NDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred ccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCC
Confidence 46999997 2235777899998 89999432 2 2 6999999875
No 259
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=89.12 E-value=6.3 Score=43.93 Aligned_cols=99 Identities=22% Similarity=0.272 Sum_probs=69.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCC---CC-------------------CC--------CCchHHHH
Q 001340 705 RILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAG---SS-------------------GQ--------GTSDEYVD 754 (1096)
Q Consensus 705 ~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~---~~-------------------~~--------~e~ee~~~ 754 (1096)
+.+|++|..++.++.++++=+..|+.+|...-...... +. .. ...+..+
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si- 80 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI- 80 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH-
Confidence 35777788888888888888888888886555310000 00 00 0011111
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001340 755 ELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 830 (1096)
Q Consensus 755 el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~El 830 (1096)
+--=..|+|++++.+..|++|..++..++..|.. ||.+|.++|.+|-+.+
T Consensus 81 -----LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~---------------------Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 81 -----LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRR---------------------EVESLRADNVKLYEKI 130 (248)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
Confidence 1222468999999999999999999999999988 9999999999997763
No 260
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=88.99 E-value=23 Score=40.52 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=34.2
Q ss_pred HHHhhHHHHHHHHHHHHHhHHhhhhHHH-HHHH---HHHHh-hHHHHHHHHHHHHHHHHHHHHHHh
Q 001340 759 KVQSQETENEKLKLEHVQLSEENSGLHV-QNQK---LAEEA-SYAKELASAAAVELKNLAGEVTKL 819 (1096)
Q Consensus 759 ~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~-e~~k---l~~e~-~~~k~la~aa~~qlk~l~~ev~kL 819 (1096)
.+.+..+.|-+|+..+..|.=|...|.. +..+ +-... ....++-++.-.|+|.++..|+..
T Consensus 195 ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~~~~e~~p~~~~~~s~~v~~ql~selkkivf~~eni 260 (401)
T PF06785_consen 195 MLDKRQAYIGKLESKVQDLMYEIRNLLQLESDMKESMPSTPSPSSQDVPKQLVSELKKIVFKVENI 260 (401)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchhhhhHHHHHHHHHHHHHHHhhH
Confidence 3344455666677777776666555432 2211 11111 245566677778888887766654
No 261
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=88.90 E-value=42 Score=37.14 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHH------hHHHHHHHHHhhhHH
Q 001340 644 NLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSA------DNRILQEQLQNKCSE 717 (1096)
Q Consensus 644 kL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~a------e~~~lqeqL~~a~~e 717 (1096)
+|+.+..+-.+.=..|..|++.-- -.+.|+..+|..|++++.=....|+..-- .-..|...|.+....
T Consensus 119 ~lkqQ~~~a~RrE~ilv~rlA~kE------QEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~K 192 (330)
T KOG2991|consen 119 KLKQQQQEAARRENILVMRLATKE------QEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDK 192 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443211 14556777888888888877777775521 223344444444444
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCC-----------------CCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHh
Q 001340 718 NKKLQEKVNLLEQQLACQNGDKSAGSSGQ-----------------GTSDEYVDELRKKVQSQETENEKLKLEHVQLSEE 780 (1096)
Q Consensus 718 ~~~L~~~l~~lk~~l~~~~e~~~~~~~~~-----------------~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee 780 (1096)
+.++|.+|..-+ =-..+..++. ..++..|.+|...+..|+...++++.-...|..=
T Consensus 193 lee~QnelsAwk-------FTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~df 265 (330)
T KOG2991|consen 193 LEEAQNELSAWK-------FTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDF 265 (330)
T ss_pred HHHHHhhhheee-------ecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHH
Confidence 444443332211 1011111100 0123345666777778888877777666555554
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001340 781 NSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLE 827 (1096)
Q Consensus 781 ~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~ 827 (1096)
...|....+...+ -+--+-.+||.-.++|..|...++++.
T Consensus 266 m~eLdedVEgmqs-------TiliLQq~Lketr~~Iq~l~k~~~q~s 305 (330)
T KOG2991|consen 266 MEELDEDVEGMQS-------TILILQQKLKETRKEIQRLKKGLEQVS 305 (330)
T ss_pred HHHHHHHHhcchh-------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443333332 223333444444444444444444433
No 262
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=88.88 E-value=75 Score=40.05 Aligned_cols=183 Identities=26% Similarity=0.259 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHH
Q 001340 640 VQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENK 719 (1096)
Q Consensus 640 ~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~ 719 (1096)
+|.-.+.+.+...+.++..|+..+. ..+++-+-|...|+++..++++...-.+.|+..|.-+...+.
T Consensus 324 aQeleh~~~~~qL~~qVAsLQeev~-------------sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~ 390 (739)
T PF07111_consen 324 AQELEHRDSVKQLRGQVASLQEEVA-------------SQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARR 390 (739)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3433455666666666777777664 345566667888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCC-------CCchHHHHHHH----------------------HHHHhhH------
Q 001340 720 KLQEKVNLLEQQLACQNGDKSAGSSGQ-------GTSDEYVDELR----------------------KKVQSQE------ 764 (1096)
Q Consensus 720 ~L~~~l~~lk~~l~~~~e~~~~~~~~~-------~e~ee~~~el~----------------------~~~~~Q~------ 764 (1096)
.++.+......++....+ +..+.+ +..+.++..+. ..+..|.
T Consensus 391 ~lqqq~~~aee~Lk~v~e---av~S~q~~L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaqlrqe~~~ 467 (739)
T PF07111_consen 391 RLQQQTASAEEQLKLVSE---AVSSSQQWLESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLALAQLRQEQCP 467 (739)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHhccCC
Confidence 788888777777644333 000000 11111111110 0011110
Q ss_pred ---HHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001340 765 ---TENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 841 (1096)
Q Consensus 765 ---~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e 841 (1096)
-...++..|...|.+|-.+|..+++..+. -+.++ ...+. +....+..+|.....+|+.+|...+++++..+
T Consensus 468 ~~pp~~~dL~~ELqqLReERdRl~aeLqlSa~-liqqe--V~~Ar---EqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~ 541 (739)
T PF07111_consen 468 PSPPSVTDLSLELQQLREERDRLDAELQLSAR-LIQQE--VGRAR---EQGEAERQQLSEVAQQLEQELQEKQESLAELE 541 (739)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHhHH-HHHHH--HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334555666666666666666652222 11111 11121 23344666777777777777777777777776
Q ss_pred HHH
Q 001340 842 AAM 844 (1096)
Q Consensus 842 ~qi 844 (1096)
.|+
T Consensus 542 ~QL 544 (739)
T PF07111_consen 542 EQL 544 (739)
T ss_pred HHH
Confidence 666
No 263
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=88.82 E-value=0.2 Score=56.95 Aligned_cols=40 Identities=38% Similarity=0.988 Sum_probs=32.8
Q ss_pred ccccccccccceEEeCC--CCcccchhhh-hcCCCCCCCcccccc
Q 001340 1049 MCKVCFESPTAAILLPC--RHFCLCKSCS-LACSECPICRTKISD 1090 (1096)
Q Consensus 1049 ~C~IC~~~~~~~vl~pC--gH~~~C~~C~-~~~~~CPiCr~~i~~ 1090 (1096)
.|+||++.-.-.++ .| ||+ .|..|. .....||.||.+|+.
T Consensus 50 eCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 50 DCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKVSNKCPTCRLPIGN 92 (299)
T ss_pred cCchhhccCcccce-ecCCCcE-ehhhhhhhhcccCCcccccccc
Confidence 79999887776666 56 799 999998 445679999999984
No 264
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=88.77 E-value=4.7 Score=36.34 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 767 NEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQ 845 (1096)
Q Consensus 767 ie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qiq 845 (1096)
+++|+..+..+.+-...|..+++.|.+ +.+.|..+|..|..+....+.....|..-|.
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke---------------------~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKE---------------------KNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555 5555555566666666666666667765543
No 265
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.70 E-value=5 Score=43.51 Aligned_cols=14 Identities=43% Similarity=0.304 Sum_probs=5.9
Q ss_pred hHHhhhhHHHHHHH
Q 001340 777 LSEENSGLHVQNQK 790 (1096)
Q Consensus 777 L~Ee~~~L~~e~~k 790 (1096)
|.++|++|..+++.
T Consensus 137 L~~~n~~L~~~l~~ 150 (206)
T PRK10884 137 LKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444443333
No 266
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.70 E-value=0.16 Score=58.81 Aligned_cols=30 Identities=40% Similarity=0.900 Sum_probs=24.6
Q ss_pred ccccccccccccc---eEEeCCCCcccchhhhhc
Q 001340 1047 SHMCKVCFESPTA---AILLPCRHFCLCKSCSLA 1077 (1096)
Q Consensus 1047 ~~~C~IC~~~~~~---~vl~pCgH~~~C~~C~~~ 1077 (1096)
-..|.||++.... .+++||+|+ ||..|...
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kd 216 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKD 216 (445)
T ss_pred cccceeeehhhcCcceeeecccchH-HHHHHHHH
Confidence 3479999997654 889999999 99999543
No 267
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.64 E-value=67 Score=39.18 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHH
Q 001340 750 DEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 793 (1096)
Q Consensus 750 ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~ 793 (1096)
|.....++..+...+.-=.++-+++..|.|||-.|..+...|..
T Consensus 148 E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~ 191 (772)
T KOG0999|consen 148 EDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQ 191 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhh
Confidence 33333344333333333345566777888887777776665544
No 268
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.59 E-value=4.6 Score=46.62 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
|+..+.++|.+.+.+..++.+++..++.+.
T Consensus 58 Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 58 EEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555544444444
No 269
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=88.57 E-value=0.27 Score=45.37 Aligned_cols=30 Identities=27% Similarity=0.660 Sum_probs=23.6
Q ss_pred ceEEeCCCCcccchhhhh-------cCCCCCCCccccc
Q 001340 1059 AAILLPCRHFCLCKSCSL-------ACSECPICRTKIS 1089 (1096)
Q Consensus 1059 ~~vl~pCgH~~~C~~C~~-------~~~~CPiCr~~i~ 1089 (1096)
.+|++.|+|. |-..|.. .-..||+||+++.
T Consensus 46 plv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 46 PLVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ceeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 5688999998 9999932 2356999999864
No 270
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=88.38 E-value=0.29 Score=59.08 Aligned_cols=50 Identities=30% Similarity=0.435 Sum_probs=31.4
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
..|+||.-.. +..+...|. .+..+.+.--..|| .+|-||++|+||||.+.
T Consensus 117 ~~~tfd~fv~-g~~n~~a~~-~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 117 PKYTFDNFVV-GKSNRLAHA-AALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCCccccccc-CCCcHHHHH-HHHHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 4688987432 235555555 33434443222344 48889999999999885
No 271
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=88.23 E-value=60 Score=39.73 Aligned_cols=29 Identities=24% Similarity=0.177 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 704 NRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 704 ~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
...++++|..++.+...++..++.++.++
T Consensus 206 l~~l~~~l~~~~~~l~~~~a~~~~l~~~l 234 (498)
T TIGR03007 206 ISEAQEELEAARLELNEAIAQRDALKRQL 234 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666666666666666666665
No 272
>PRK12377 putative replication protein; Provisional
Probab=88.21 E-value=0.38 Score=53.55 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=36.2
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccCC
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G 193 (1096)
..+||........+..++. .+..+++.+..+. ..|+-||++|+||||.+.+
T Consensus 70 ~~tFdnf~~~~~~~~~a~~-~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALS-QAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred cCCcCCcccCChhHHHHHH-HHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 3478875544555666665 5666777776654 4688899999999999863
No 273
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.12 E-value=58 Score=37.82 Aligned_cols=173 Identities=18% Similarity=0.176 Sum_probs=105.8
Q ss_pred CchhhHHHHHHHHHHHHHHHhhHHHHHHHhhhccCC-CCCch-------HHHHHHHHHHHHHHHHHHHHHHHH-HHhccc
Q 001340 599 TSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVND-PDGSK-------VQIQNLEREIQEKRRQMRILEQRI-IENGEA 669 (1096)
Q Consensus 599 ~~d~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~-~~~~~-------~Q~qkL~~elrdKeeei~~L~qki-~~s~~~ 669 (1096)
....+++..-=.++|..=+.++...++.+.++...+ |.=.+ --+.-+..+++-.+...+..-++. ..=|
T Consensus 66 ~~P~Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR-- 143 (325)
T PF08317_consen 66 TVPMLELYQFSCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWR-- 143 (325)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 445677777777788888888888888777665544 32111 113346666666666665555544 1101
Q ss_pred CCCcchhHHHHHHHHHHHHhhhhh----hHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 001340 670 SMANASMVDMQQTVTRLMSQCNEK----AFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSG 745 (1096)
Q Consensus 670 s~~~~~~~e~~~~v~~L~~~l~e~----~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~ 745 (1096)
.+.+..|+..|.++ .-.+.........+.+-+.........|.+++..|+....+ .+
T Consensus 144 ----------~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e-~~-------- 204 (325)
T PF08317_consen 144 ----------MQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE-IE-------- 204 (325)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hh--------
Confidence 11222233333332 22333445566677777777778888888888888877621 11
Q ss_pred CCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHH
Q 001340 746 QGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 793 (1096)
Q Consensus 746 ~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~ 793 (1096)
..-.+.+..+++.+..+..+|+..+++...|..+...+..+.+.+..
T Consensus 205 -~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~ 251 (325)
T PF08317_consen 205 -SCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEE 251 (325)
T ss_pred -hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12235666777778888888888888888888887777777766666
No 274
>PRK08116 hypothetical protein; Validated
Probab=87.97 E-value=0.31 Score=54.86 Aligned_cols=51 Identities=25% Similarity=0.318 Sum_probs=35.7
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHHHHhc--CCceeEEeeccCCCCcccccC
Q 001340 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAME--GVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~--G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
..++||.-. .+..+...|. .+...++.+.+ +.|..++-||.+|+||||.+.
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~-~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYK-IARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred Hhcchhccc-CChHHHHHHH-HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 357888654 3455555665 56667776654 345569999999999999875
No 275
>PRK05642 DNA replication initiation factor; Validated
Probab=87.91 E-value=0.45 Score=52.37 Aligned_cols=48 Identities=17% Similarity=0.319 Sum_probs=30.0
Q ss_pred CCcceecceecCCCCChhHHHhhhhHHHHHHHhc---CC-ceeEEeeccCCCCcccccC
Q 001340 138 PATAYAFDRVFGPHANSQEVYDVAARPVVKAAME---GV-NGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 138 ~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~---G~-N~tIfaYGqTgSGKT~Tm~ 192 (1096)
-...|+||.-+.. . +... ...+....+ ++ ...++-||++|+||||-+.
T Consensus 12 ~~~~~tfdnF~~~-~-~~~a-----~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 12 LRDDATFANYYPG-A-NAAA-----LGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CCCcccccccCcC-C-hHHH-----HHHHHHHhhccccCCCCeEEEECCCCCCHHHHHH
Confidence 3456899987733 2 2333 333443333 22 2468899999999999875
No 276
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.90 E-value=67 Score=41.62 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhhhc
Q 001340 603 MDLLVEQVKMLAGEIAFSSSNLKRLVDQS 631 (1096)
Q Consensus 603 ~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~ 631 (1096)
.+-|.+|+..+..++......|..|-.+.
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~~~ 224 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRAQS 224 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35566666667766666666666655443
No 277
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.87 E-value=0.3 Score=52.81 Aligned_cols=44 Identities=27% Similarity=0.460 Sum_probs=34.4
Q ss_pred ccccccccccccc----eEEeCCCCcccchhhhhcC----CCCCCCcccccce
Q 001340 1047 SHMCKVCFESPTA----AILLPCRHFCLCKSCSLAC----SECPICRTKISDR 1091 (1096)
Q Consensus 1047 ~~~C~IC~~~~~~----~vl~pCgH~~~C~~C~~~~----~~CPiCr~~i~~~ 1091 (1096)
...|+||.+.-++ ++|-||||. +|..|.... ..||+|..+...+
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCccc
Confidence 3489999985444 567899998 999998776 4599999886543
No 278
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=87.85 E-value=70 Score=38.46 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhhhccC-CCCC----chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 603 MDLLVEQVKMLAGEIAFSSSNLKRLVDQSVN-DPDG----SKVQIQNLEREIQEKRRQMRILEQRII 664 (1096)
Q Consensus 603 ~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~-~~~~----~~~Q~qkL~~elrdKeeei~~L~qki~ 664 (1096)
.+-|.+|++.+..++......|..|-++..- +|++ ...++..|+.++...+.+...+..+..
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~ 239 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEG 239 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778888888888888888888888777644 2321 123455566666666655555555543
No 279
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.57 E-value=0.48 Score=52.17 Aligned_cols=49 Identities=10% Similarity=0.364 Sum_probs=31.6
Q ss_pred CCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 138 PATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 138 ~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
....|+||.-+. . .+..++..+.. ++. ......++-||++|+||||.+.
T Consensus 15 ~~~~~~fd~f~~-~-~n~~a~~~l~~-~~~---~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 15 LPDDETFASFYP-G-DNDSLLAALQN-ALR---QEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCCcCCcccccc-C-ccHHHHHHHHH-HHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 345688987654 3 55666653322 221 2223478999999999999985
No 280
>PRK06526 transposase; Provisional
Probab=87.40 E-value=0.27 Score=54.90 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=28.6
Q ss_pred cceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccCC
Q 001340 144 FDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1096)
Q Consensus 144 FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G 193 (1096)
||.-|.+.-+...+..-.....++ .|.| |+.||++|+||||.+.+
T Consensus 73 fd~~~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 73 FDFDHQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred ccCccCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 343344555555555544444443 3444 79999999999999864
No 281
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=87.32 E-value=0.35 Score=58.41 Aligned_cols=49 Identities=24% Similarity=0.405 Sum_probs=31.8
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.|+||.-+. +.++...|. .+..++..--..|| .+|-||.+|+||||.|.
T Consensus 111 ~~tFdnFv~-g~~n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVI-GSSNEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccC-CCcHHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 589998654 345565664 44444432111244 48899999999999885
No 282
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=87.28 E-value=73 Score=38.03 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001340 432 SLIKKYQREISSLKEELDQL 451 (1096)
Q Consensus 432 ~~i~~~~~ei~~Lk~el~~~ 451 (1096)
..++.++..|..++++|...
T Consensus 4 ~~~~~l~~Ki~~~~eqi~~e 23 (395)
T PF10267_consen 4 AAIDHLQQKILKLKEQIKVE 23 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888654
No 283
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.25 E-value=73 Score=38.06 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=21.8
Q ss_pred HhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001340 779 EENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 829 (1096)
Q Consensus 779 Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~E 829 (1096)
|.+.+|..+++++-+... . +...-.++.+.+-+.|...+..++.+|
T Consensus 366 el~~~Lrsele~lp~dv~-r----k~ytqrikEi~gniRKq~~DI~Kil~e 411 (521)
T KOG1937|consen 366 ELAEKLRSELEKLPDDVQ-R----KVYTQRIKEIDGNIRKQEQDIVKILEE 411 (521)
T ss_pred HHHHHHHHHHhcCCchhH-H----HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 334455555555555222 1 122233445555555555555555554
No 284
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=87.18 E-value=40 Score=37.71 Aligned_cols=156 Identities=17% Similarity=0.152 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCC-CCCCCCCCchHHHHHH
Q 001340 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKS-AGSSGQGTSDEYVDEL 756 (1096)
Q Consensus 678 e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~-~~~~~~~e~ee~~~el 756 (1096)
+|.+++.+|+.+-.-+-|+|+-..|....-++...+...++..|..+...|-+.. +.+|... -........+-.+.-+
T Consensus 22 elE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c-~~lek~rqKlshdlq~Ke~qv~~l 100 (307)
T PF10481_consen 22 ELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESC-ENLEKTRQKLSHDLQVKESQVNFL 100 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHH-HHHHHHHHHhhHHHhhhHHHHHHH
Confidence 7778888888888888888887766555555555566666666666655554433 1111000 0000001122233333
Q ss_pred HHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHH----HHhhHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHH
Q 001340 757 RKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLA----EEASYAKELA-------SAAAVELKNLAGEVTKLSLQNAK 825 (1096)
Q Consensus 757 ~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~----~e~~~~k~la-------~aa~~qlk~l~~ev~kL~~~n~q 825 (1096)
...+..=+.+|+.|.++.+.+..|..+......-.. --++-+|-.+ ......+++|-+..++--.+..+
T Consensus 101 EgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkeveerkr 180 (307)
T PF10481_consen 101 EGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEVEERKR 180 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 444444555666666666666555544333322110 0111222111 13567889999999999999999
Q ss_pred HHHHHHHHH
Q 001340 826 LEKELLAAR 834 (1096)
Q Consensus 826 L~~Ele~~k 834 (1096)
|+.|+.+.+
T Consensus 181 le~e~k~lq 189 (307)
T PF10481_consen 181 LEAEVKALQ 189 (307)
T ss_pred HHHHHHHHh
Confidence 999977666
No 285
>PRK09087 hypothetical protein; Validated
Probab=87.08 E-value=0.5 Score=51.81 Aligned_cols=50 Identities=22% Similarity=0.214 Sum_probs=33.1
Q ss_pred CCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 137 NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 137 ~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.....|+||.-+.. ..+..+|.. +.....-.+..++-||++||||||-+.
T Consensus 13 ~~~~~~~~~~Fi~~-~~N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 13 SHDPAYGRDDLLVT-ESNRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCCCCChhceeec-CchHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 33456899987743 334557763 333222235568999999999999986
No 286
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=86.96 E-value=0.37 Score=58.07 Aligned_cols=49 Identities=29% Similarity=0.419 Sum_probs=33.0
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
..|+||.-+- +..+...|.. +..++.. -..||. +|-||++|+||||.|.
T Consensus 100 ~~~tFdnFv~-g~~n~~a~~~-~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 100 PDYTFENFVV-GPGNSFAYHA-ALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCccccccc-CCchHHHHHH-HHHHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 4699998664 3456666653 3334332 123675 9999999999999885
No 287
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.86 E-value=28 Score=34.60 Aligned_cols=22 Identities=9% Similarity=0.410 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001340 642 IQNLEREIQEKRRQMRILEQRI 663 (1096)
Q Consensus 642 ~qkL~~elrdKeeei~~L~qki 663 (1096)
+++|+..|+.++.++..+...+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el 39 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEEL 39 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 288
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.65 E-value=41 Score=43.28 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=36.0
Q ss_pred HhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001340 761 QSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSR 840 (1096)
Q Consensus 761 ~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~ 840 (1096)
.+|..++++++.++..|.+.-.+|..+.+.+.+ .+..+.+.+..-+..+-...-.|+.-.+...+||+..+..+.+.
T Consensus 575 e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d---~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l 651 (717)
T PF10168_consen 575 EQQLKELQELQEERKSLRESAEKLAERYEEAKD---KQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDL 651 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666555555554444443 23333333333333222222223333344444555444444443
Q ss_pred HH
Q 001340 841 GA 842 (1096)
Q Consensus 841 e~ 842 (1096)
..
T Consensus 652 ~~ 653 (717)
T PF10168_consen 652 KA 653 (717)
T ss_pred HH
Confidence 33
No 289
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=86.55 E-value=1.4e+02 Score=40.54 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=20.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhcC
Q 001340 709 EQLQNKCSENKKLQEKVNLLEQQLACQNG 737 (1096)
Q Consensus 709 eqL~~a~~e~~~L~~~l~~lk~~l~~~~e 737 (1096)
+++..++.++.+|++++..+.+.+...++
T Consensus 878 ~~~~qle~~~~~l~e~~~~~~s~~~e~~~ 906 (1294)
T KOG0962|consen 878 ARLQQLEEDIEELSEEITRLDSKVKELLE 906 (1294)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHh
Confidence 34566677777788888888777755555
No 290
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.53 E-value=3.9 Score=47.21 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=9.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Q 001340 814 GEVTKLSLQNAKLEKELLAARES 836 (1096)
Q Consensus 814 ~ev~kL~~~n~qL~~Ele~~k~~ 836 (1096)
.+.+.+..+..++.++....+..
T Consensus 99 ~~~n~~~~~l~~~~~e~~sl~~q 121 (314)
T PF04111_consen 99 REYNELQLELIEFQEERDSLKNQ 121 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333
No 291
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=86.49 E-value=1.1e+02 Score=39.14 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001340 764 ETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGA 842 (1096)
Q Consensus 764 ~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~ 842 (1096)
..++.++..+...+.++...+..++...-+ .+.+.....+++.+.+++.++..+...+..+++..+..+...+.
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l~~~~~-----~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKISTIPS-----EEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555544333 13344444555555555555555555555555555544444443
No 292
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=86.19 E-value=66 Score=39.34 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=58.4
Q ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001340 770 LKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNG 849 (1096)
Q Consensus 770 lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qiq~v~~ 849 (1096)
|..++..|..+++...++......|--.-......++.+.+.+..++..+.....+|.+||+.-+ ..||.||+.+++
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr---~NYE~QLs~MSE 494 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTR---RNYEEQLSMMSE 494 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHH
Confidence 35666777777777777776666666666666677788888899999999999999999988766 568888866554
No 293
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.10 E-value=43 Score=34.22 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=17.3
Q ss_pred HHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001340 696 ELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQ 731 (1096)
Q Consensus 696 ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~ 731 (1096)
+.+-..++...|++++...+.+...|+.+++.+++.
T Consensus 46 daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sE 81 (140)
T PF10473_consen 46 DAENSKAEIETLEEELEELTSELNQLELELDTLRSE 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445555555555555555555555544443
No 294
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=86.05 E-value=0.49 Score=56.30 Aligned_cols=50 Identities=30% Similarity=0.435 Sum_probs=31.2
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
..|+||.-.- +..+...|. ++..+...--..|| .+|-||++|+||||.+.
T Consensus 105 ~~~tfd~fi~-g~~n~~a~~-~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 105 PKYTFDNFVV-GKSNRLAHA-AALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCccccccc-CCcHHHHHH-HHHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 4689988432 345555664 34444443111244 47889999999999875
No 295
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=85.80 E-value=1.4e+02 Score=39.77 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 001340 434 IKKYQREISSLKEELD 449 (1096)
Q Consensus 434 i~~~~~ei~~Lk~el~ 449 (1096)
++.++..+..|+.++.
T Consensus 180 ~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 180 IKEAKAKIEELEGQLS 195 (908)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555444
No 296
>PRK06835 DNA replication protein DnaC; Validated
Probab=85.57 E-value=0.33 Score=56.28 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=26.6
Q ss_pred HHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccCC
Q 001340 156 EVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1096)
Q Consensus 156 ~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G 193 (1096)
.+++ .+...|+.+-.+. ..|+-||++|+||||.+.+
T Consensus 167 ~~~~-~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 167 KILE-KCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHH-HHHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 3443 4556777776555 5699999999999998753
No 297
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=85.30 E-value=1.1e+02 Score=38.03 Aligned_cols=77 Identities=26% Similarity=0.194 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHH
Q 001340 765 TENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKL---EKELLAARESMHSRG 841 (1096)
Q Consensus 765 ~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL---~~Ele~~k~~~~~~e 841 (1096)
.|++.+++|...+.|+.+.|..+++.+..+.- ++-..+..+.+.+-+.+.+++..+..+ +.|++-......+|+
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~---d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ 350 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQ---DLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYR 350 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 45677888888888888888888766665442 233333334444444555554444443 555666666666666
Q ss_pred HHH
Q 001340 842 AAM 844 (1096)
Q Consensus 842 ~qi 844 (1096)
...
T Consensus 351 ee~ 353 (511)
T PF09787_consen 351 EEL 353 (511)
T ss_pred HHH
Confidence 544
No 298
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.19 E-value=44 Score=37.62 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=9.0
Q ss_pred HhhHHHHHHhhhhhc
Q 001340 938 ANMWVLVAKLKKEVG 952 (1096)
Q Consensus 938 ~~~~~l~~~Lkke~~ 952 (1096)
..+|-||..|-.=++
T Consensus 202 gyvahlv~lls~yL~ 216 (302)
T PF10186_consen 202 GYVAHLVSLLSRYLG 216 (302)
T ss_pred HHHHHHHHHHHHHhC
Confidence 456666666665554
No 299
>PRK07952 DNA replication protein DnaC; Validated
Probab=84.87 E-value=0.71 Score=51.28 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=33.4
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccCC
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G 193 (1096)
..+||........|..++. .+..+++.+..|+ ..++-||.+|+||||.+.+
T Consensus 68 ~~tFdnf~~~~~~q~~al~-~a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 68 NCSFENYRVECEGQMNALS-KARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CCccccccCCCchHHHHHH-HHHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 4678765433445555665 3444555554443 3688999999999998863
No 300
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=84.84 E-value=4.1 Score=44.09 Aligned_cols=57 Identities=28% Similarity=0.306 Sum_probs=48.7
Q ss_pred HHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 768 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQ 845 (1096)
Q Consensus 768 e~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qiq 845 (1096)
++++++...|.|||+.|..+++.|.. .-..|.++|..|..+|+..++.+.....++|
T Consensus 93 ~eme~~i~dL~een~~L~~en~~Lr~---------------------~n~~L~~~n~el~~~le~~~~~l~~~~~~~~ 149 (292)
T KOG4005|consen 93 EEMEYEIKDLTEENEILQNENDSLRA---------------------INESLLAKNHELDSELELLRQELAELKQQQQ 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHhhhHHHHHHHHHHHHHHHhhHHHHH
Confidence 67788899999999999999999988 6667888899999998888888887776663
No 301
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.82 E-value=9.1 Score=41.54 Aligned_cols=48 Identities=21% Similarity=0.163 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 678 e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
+|++.+.....+.+ ....+++.|+++|..+..++..|+.+++++++..
T Consensus 122 ~l~~~~~~~~~~~~-------~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 122 EMQQKVAQSDSVIN-------GLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555444333 2466888899999999999999999999988776
No 302
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=84.63 E-value=84 Score=36.32 Aligned_cols=133 Identities=12% Similarity=0.174 Sum_probs=78.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHH
Q 001340 680 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKK 759 (1096)
Q Consensus 680 ~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~ 759 (1096)
-++-..|..-++...=+|+.. +..+...+..++.++.-+..++........ ...+....++..
T Consensus 134 ~~eN~~L~eKlK~l~eQye~r---E~~~~~~~k~keLE~Ql~~AKl~q~~~~~~--------------~e~~k~~~~~~~ 196 (309)
T PF09728_consen 134 REENEELREKLKSLIEQYELR---EEHFEKLLKQKELEVQLAEAKLEQQQEEAE--------------QEKEKAKQEKEI 196 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHH
Confidence 334444444444444444432 334444555555555555555555544441 111122223333
Q ss_pred HHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001340 760 VQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 829 (1096)
Q Consensus 760 ~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~E 829 (1096)
++.+..++..+...-..|..+...-..+.+.+-+-.....++|..++.+++.+++.+.+|+.+|..+..-
T Consensus 197 ~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k 266 (309)
T PF09728_consen 197 LLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSK 266 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445666666666666666666666667777777888999999999999999999998888766554
No 303
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=84.59 E-value=1.3 Score=52.02 Aligned_cols=26 Identities=35% Similarity=0.604 Sum_probs=19.0
Q ss_pred HHHHhcCCce-eEEeeccCCCCccccc
Q 001340 166 VKAAMEGVNG-TVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 166 V~~~l~G~N~-tIfaYGqTgSGKT~Tm 191 (1096)
+..++.|.-. .++.||.||+|||.|+
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 3444444444 4999999999999876
No 304
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=84.58 E-value=76 Score=41.90 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=24.8
Q ss_pred HHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 701 SADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 701 ~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
..+...++.+|+....++..+++++..++..|
T Consensus 482 ~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l 513 (1041)
T KOG0243|consen 482 KEEKEKLKSKLQNKNKELESLKEELQQAKATL 513 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566777888888888888888888888886
No 305
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=84.56 E-value=48 Score=42.77 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=15.1
Q ss_pred hhHHHHhhHHHHHHHHHHhhcC
Q 001340 342 EGSYINKSLLTLGTVIGKLSEG 363 (1096)
Q Consensus 342 E~~~INkSL~aLg~vI~aL~~~ 363 (1096)
|...+.++|..-.+.|..|.+.
T Consensus 107 e~~~l~~~l~~~~~~i~~l~~~ 128 (769)
T PF05911_consen 107 ENSALSKALQEKEKLIAELSEE 128 (769)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777653
No 306
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=84.52 E-value=0.83 Score=49.29 Aligned_cols=50 Identities=18% Similarity=0.360 Sum_probs=32.7
Q ss_pred CCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 137 NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 137 ~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
+....|+||.... + .+..++..+-. + +..+....|+-||++|+||||...
T Consensus 7 ~~~~~~~~~~~~~-~-~~~~~~~~l~~-~---~~~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 7 GLPDDPTFDNFYA-G-GNAELLAALRQ-L---AAGKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCCchhhcCcCc-C-CcHHHHHHHHH-H---HhcCCCCeEEEECCCCCCHHHHHH
Confidence 3445588887763 2 44445543222 2 225667789999999999999874
No 307
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=84.46 E-value=19 Score=38.98 Aligned_cols=44 Identities=27% Similarity=0.431 Sum_probs=24.7
Q ss_pred HHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001340 768 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLA 832 (1096)
Q Consensus 768 e~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~ 832 (1096)
+.+..++..|.+++..|..+.+.+.+ ++..|..+|.+|++.+..
T Consensus 145 ~E~~~EkeeL~~eleele~e~ee~~e---------------------rlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 145 EELQKEKEELLKELEELEAEYEEVQE---------------------RLKRLEVENSRLEEMLKK 188 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555555 666666666666665443
No 308
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=84.37 E-value=0.96 Score=49.16 Aligned_cols=52 Identities=19% Similarity=0.388 Sum_probs=32.2
Q ss_pred CCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 136 YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 136 ~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
......|+||..++ ... ..++. ..+.++.. .+.+..|+-||++|+||||.+.
T Consensus 9 ~~~~~~~~~d~f~~-~~~-~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 9 LGPPPPPTFDNFVA-GEN-AELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCCCChhhhccccc-CCc-HHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 33445689999883 222 33333 23333331 2345679999999999999874
No 309
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=84.37 E-value=95 Score=36.71 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=13.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 706 ILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 706 ~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.++.+|.....++..++.++..++..+
T Consensus 78 ~~~~~l~~l~~~~~~l~a~~~~l~~~~ 104 (423)
T TIGR01843 78 DVEADAAELESQVLRLEAEVARLRAEA 104 (423)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554443
No 310
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=84.01 E-value=91 Score=36.22 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH----hhHHHHHHHHHHHHHHH
Q 001340 896 QARKQREAALEAALAEKEFLEDEYR----KKVEESKRREEALENDL 937 (1096)
Q Consensus 896 ~a~~erq~aLE~el~~k~~~eeEl~----~~leE~kkk~~~Le~el 937 (1096)
.+..+....+.++|.+.+.+-++-+ ..+..++.++..|+.-.
T Consensus 247 ~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 247 EELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666665544433 56778888888887754
No 311
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=83.99 E-value=90 Score=36.15 Aligned_cols=179 Identities=18% Similarity=0.154 Sum_probs=103.1
Q ss_pred CCCchhhHHHHHHHHHHHHHHHhhHHHHHHHhhhcc-CCCCCch-------HHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Q 001340 597 GMTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSV-NDPDGSK-------VQIQNLEREIQEKRRQMRILEQRI-IENG 667 (1096)
Q Consensus 597 ~~~~d~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~-~~~~~~~-------~Q~qkL~~elrdKeeei~~L~qki-~~s~ 667 (1096)
......+++.+-=-++|..-+.++...++.+.++-. +||--.+ .-+.-+..+++-.+..-+.+-+++ -+=|
T Consensus 59 ~~~iP~LElY~~sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR 138 (312)
T smart00787 59 YCTVPLLELYQFSCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEWR 138 (312)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788888888888889998888888877665 4453221 113345566666666655555554 1111
Q ss_pred ccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 001340 668 EASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQG 747 (1096)
Q Consensus 668 ~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~ 747 (1096)
.+.+.-|+..|+++ ++....|...|..+++....-...++++.+.|+..+..+......... .
T Consensus 139 ------------~kllegLk~~L~~~---~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~--~ 201 (312)
T smart00787 139 ------------MKLLEGLKEGLDEN---LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED--C 201 (312)
T ss_pred ------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--C
Confidence 12344455555554 445556666677777666666666776666666666443331111100 0
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHH
Q 001340 748 TSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 793 (1096)
Q Consensus 748 e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~ 793 (1096)
-.+.+..++..+..+..+|...+++...+.++...+....+....
T Consensus 202 -d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~ 246 (312)
T smart00787 202 -DPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTN 246 (312)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123445556666666666666666666666666666555554444
No 312
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=83.94 E-value=15 Score=33.19 Aligned_cols=28 Identities=43% Similarity=0.592 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhHHhhhhHHHHHHHHHH
Q 001340 766 ENEKLKLEHVQLSEENSGLHVQNQKLAE 793 (1096)
Q Consensus 766 Eie~lk~e~~~L~Ee~~~L~~e~~kl~~ 793 (1096)
|+++|+.++..|.+++..|..+|++|..
T Consensus 26 e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 26 ENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4444444444444445555555555544
No 313
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=83.50 E-value=63 Score=33.99 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=18.1
Q ss_pred HHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 697 LEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 697 le~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
++-...||..|.+++.+...+...|+..+...=..+
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L 79 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQIL 79 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555555555555555555544333333
No 314
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=83.47 E-value=1 Score=52.48 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=19.3
Q ss_pred HHHhc-CCceeEEeeccCCCCccccc
Q 001340 167 KAAME-GVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 167 ~~~l~-G~N~tIfaYGqTgSGKT~Tm 191 (1096)
..++. +....++-||++|+|||+++
T Consensus 32 ~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 32 RPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred HHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 33443 45568999999999999975
No 315
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=83.42 E-value=46 Score=38.30 Aligned_cols=18 Identities=11% Similarity=0.342 Sum_probs=13.0
Q ss_pred HhhHHHHHHHHHHHHHHH
Q 001340 920 RKKVEESKRREEALENDL 937 (1096)
Q Consensus 920 ~~~leE~kkk~~~Le~el 937 (1096)
.+.+-|+|=|..+.++|+
T Consensus 282 nrqisd~KfKl~KaEQei 299 (302)
T PF09738_consen 282 NRQISDYKFKLQKAEQEI 299 (302)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 355777777777777776
No 316
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=83.19 E-value=31 Score=39.05 Aligned_cols=109 Identities=25% Similarity=0.260 Sum_probs=61.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhhhhhhhhhccccccCccc
Q 001340 794 EASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM--QTVNGVNRKYSDGMKAGRKGRLSGRST 871 (1096)
Q Consensus 794 e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qi--q~v~~dar~~lq~l~~~~~e~l~~~~~ 871 (1096)
|+..+.+.|..| ..|+-.++..|..+.+-|+.||+.+|-.+.-.-.-+ -| .+.-+.
T Consensus 49 EaiLagGaaaNa---vrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEW----------------KD~nDk--- 106 (351)
T PF07058_consen 49 EAILAGGAAANA---VRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEW----------------KDENDK--- 106 (351)
T ss_pred HHHHhcchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccc----------------cccCCc---
Confidence 344444444444 577788888888899999999988886543221111 22 111111
Q ss_pred cccCcccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 001340 872 EISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDL 937 (1096)
Q Consensus 872 ~~~~~~~~~~~~~w~~~~~~K~e~~a~~erq~aLE~el~~k~~~eeEl~~~leE~kkk~~~Le~el 937 (1096)
.-+-.+|--.||.++-|++-.++.++-.|..-.+..|+. |-++.|+..|+..|
T Consensus 107 ------vMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLk-------eK~klRLK~LEe~L 159 (351)
T PF07058_consen 107 ------VMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLK-------EKLKLRLKVLEEGL 159 (351)
T ss_pred ------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhc
Confidence 002222333788888888888888876654433322332 33455556666655
No 317
>PRK08181 transposase; Validated
Probab=82.96 E-value=1.1 Score=50.66 Aligned_cols=45 Identities=24% Similarity=0.429 Sum_probs=27.1
Q ss_pred cceecCCCCChhHHHhhh-hHHHHHHHhcCCceeEEeeccCCCCcccccCC
Q 001340 144 FDRVFGPHANSQEVYDVA-ARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1096)
Q Consensus 144 FD~VF~~~~~q~~Vy~~~-~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G 193 (1096)
||.-+.+..+...+..-. +...++ .|.| |+-||++|+||||-+.+
T Consensus 80 fd~~~~~~~~~~~~~~L~~~~~~~~---~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 80 FDFEAVPMVSKAQVMAIAAGDSWLA---KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred CCccCCCCCCHHHHHHHHHHHHHHh---cCce--EEEEecCCCcHHHHHHH
Confidence 444444554554444321 112332 4555 89999999999999865
No 318
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=82.92 E-value=41 Score=37.50 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhhcC
Q 001340 929 REEALENDLANMWVLVAKLKKEVGS 953 (1096)
Q Consensus 929 k~~~Le~el~~~~~l~~~Lkke~~~ 953 (1096)
|...|+.+| ..|+.++..
T Consensus 183 Knk~lq~QL-------~~L~~EL~~ 200 (246)
T PF00769_consen 183 KNKRLQEQL-------KELKSELEQ 200 (246)
T ss_dssp H-HHHHHHH-------HHHHHHHHT
T ss_pred hhHHHHHHH-------HHHHHHHHH
Confidence 344555555 556666544
No 319
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=82.73 E-value=60 Score=33.21 Aligned_cols=113 Identities=19% Similarity=0.323 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHH---hHHHHHHHHHhhhH
Q 001340 640 VQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSA---DNRILQEQLQNKCS 716 (1096)
Q Consensus 640 ~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~a---e~~~lqeqL~~a~~ 716 (1096)
.++..|..+...++.+|..|..|+. .+..+|.++..++.+..-.++.... .+..|+ -
T Consensus 21 ~~~K~le~~~~~~E~EI~sL~~K~~-------------~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~-------r 80 (143)
T PF12718_consen 21 AKVKQLEQENEQKEQEITSLQKKNQ-------------QLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLN-------R 80 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH-------h
Confidence 5677788888888888888888885 3455555555555544433333311 122232 3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHH
Q 001340 717 ENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 793 (1096)
Q Consensus 717 e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~ 793 (1096)
++..|+++++.+...| .+...++..=-...+.+++....|..+...+..+++.+..
T Consensus 81 riq~LEeele~ae~~L---------------------~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 81 RIQLLEEELEEAEKKL---------------------KETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEE 136 (143)
T ss_pred hHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3333333333333333 1222122111223356666677777777766666666554
No 320
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=82.69 E-value=51 Score=34.89 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=12.8
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLE 729 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk 729 (1096)
+.+..++++......+..+.+++..+.
T Consensus 124 ~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 124 LLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444
No 321
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=82.63 E-value=62 Score=34.32 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.+..+.-||+.|+++|--|+++++..+.-+
T Consensus 58 q~~dl~~qL~aAEtRCslLEKQLeyMRkmv 87 (178)
T PF14073_consen 58 QNQDLSSQLSAAETRCSLLEKQLEYMRKMV 87 (178)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999988
No 322
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=82.54 E-value=1.1 Score=52.76 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=23.2
Q ss_pred hHHHhhhhHHHHHHHh-cCCceeEEeeccCCCCccccc
Q 001340 155 QEVYDVAARPVVKAAM-EGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 155 ~~Vy~~~~~plV~~~l-~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
++-++.+...+ ..++ .+....++-||++|+|||+++
T Consensus 36 e~e~~~l~~~l-~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 36 EEQIEELAFAL-RPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHHHHHHH-HHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 34444443333 3333 445567899999999999976
No 323
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=82.07 E-value=82 Score=34.31 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=50.1
Q ss_pred HhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhh
Q 001340 702 ADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEEN 781 (1096)
Q Consensus 702 ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~ 781 (1096)
.++..|..++.+....+.++..=++.++.-+.++++.. +.........+..-..|.+.+-.+...+...-
T Consensus 23 ~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~----------~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sf 92 (207)
T PF05010_consen 23 EEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEK----------QKQKELSEAEIQKLLKERDQAYADLNSLEKSF 92 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----------HhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhH
Confidence 34555666666666666666666666666665555410 00011112222233344444455555555555
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001340 782 SGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTK 818 (1096)
Q Consensus 782 ~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~k 818 (1096)
..|..+.+++-.-....+.-=..++-.+++...+|.+
T Consensus 93 sdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~ 129 (207)
T PF05010_consen 93 SDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKK 129 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5555555555444444333333333333333333333
No 324
>PRK08939 primosomal protein DnaI; Reviewed
Probab=81.98 E-value=0.74 Score=52.86 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=33.3
Q ss_pred eecceecCCCCChhHHHhhhhHHHHHHHhcC-CceeEEeeccCCCCcccccCC
Q 001340 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEG-VNGTVFAYGVTSSGKTHTMHG 193 (1096)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G-~N~tIfaYGqTgSGKT~Tm~G 193 (1096)
.+||.+-........++. .+..+++....| ..-.|+-||++|+||||-+.+
T Consensus 124 atf~~~~~~~~~~~~~~~-~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALM-AALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHH-HHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 456554333335566666 345666665543 234699999999999999864
No 325
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=81.95 E-value=1.3e+02 Score=37.56 Aligned_cols=40 Identities=13% Similarity=0.183 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHhhhccCCCCCchH
Q 001340 601 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKV 640 (1096)
Q Consensus 601 d~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~ 640 (1096)
.++..++++.+....+.-+-.-.+++|.+.+-...++.+.
T Consensus 171 ~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L 210 (557)
T COG0497 171 RELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEEL 210 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHH
Confidence 5677777777777777777777777777766554444333
No 326
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=81.93 E-value=0.81 Score=46.95 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=21.0
Q ss_pred HHHHHHhcC-CceeEEeeccCCCCcccccCC
Q 001340 164 PVVKAAMEG-VNGTVFAYGVTSSGKTHTMHG 193 (1096)
Q Consensus 164 plV~~~l~G-~N~tIfaYGqTgSGKT~Tm~G 193 (1096)
.+++.+-.+ .+..++..|+||||||++|.+
T Consensus 14 ~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 14 RIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 344444444 466677788999999999973
No 327
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=81.92 E-value=0.94 Score=53.71 Aligned_cols=51 Identities=29% Similarity=0.501 Sum_probs=31.6
Q ss_pred CcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 139 ATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 139 ~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
...|+||.-. .+.++.-.|. ++. .|...-.+.---||-||.+|+||||-|.
T Consensus 81 ~~~ytFdnFv-~g~~N~~A~a-a~~-~va~~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 81 NPKYTFDNFV-VGPSNRLAYA-AAK-AVAENPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCchhhee-eCCchHHHHH-HHH-HHHhccCCcCCcEEEECCCCCCHHHHHH
Confidence 3469999854 3455555554 222 1222222334458999999999999985
No 328
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=81.85 E-value=53 Score=33.60 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=28.3
Q ss_pred HHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 687 MSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 687 ~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
-.-+.......+.-..-.+.+.+++....+++..|...+.+|+.++
T Consensus 37 in~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~ 82 (151)
T PF11559_consen 37 INCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQL 82 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333333334444455566677777777777777777777777776
No 329
>PRK10869 recombination and repair protein; Provisional
Probab=81.81 E-value=97 Score=38.74 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=9.9
Q ss_pred EeeccCCCCccccc
Q 001340 178 FAYGVTSSGKTHTM 191 (1096)
Q Consensus 178 faYGqTgSGKT~Tm 191 (1096)
+-.|.||||||-.|
T Consensus 26 vitGetGaGKS~il 39 (553)
T PRK10869 26 VITGETGAGKSIAI 39 (553)
T ss_pred EEECCCCCChHHHH
Confidence 35689999997544
No 330
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.70 E-value=1.4e+02 Score=36.67 Aligned_cols=63 Identities=6% Similarity=0.017 Sum_probs=31.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 001340 755 ELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLS 820 (1096)
Q Consensus 755 el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~ 820 (1096)
+..+.+...+.+.++.-.....+..++-.+..+.+.+..+. +-.+.-++-..+|-.+.|.+|+
T Consensus 421 d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDk---dkkiaeler~~kdqnkkvaNlk 483 (654)
T KOG4809|consen 421 DQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDK---DKKIAELERHMKDQNKKVANLK 483 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---cchhhhcCchhhhhhhHHhhHH
Confidence 33344445455555444444444555555555555544322 2234444566667667776664
No 331
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=81.53 E-value=1.1e+02 Score=35.43 Aligned_cols=132 Identities=19% Similarity=0.210 Sum_probs=65.3
Q ss_pred HhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhh
Q 001340 776 QLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEK----ELLAARESMHSRGAAMQTVNGVN 851 (1096)
Q Consensus 776 ~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~----Ele~~k~~~~~~e~qiq~v~~da 851 (1096)
.|.+....|......|........++.-.+...+..|..+++.|......+.. ||..+|+.++.-..++.--..
T Consensus 148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~-- 225 (312)
T smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVK-- 225 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34444444444444444444444445555555555555666666555555433 566666665554444321110
Q ss_pred hhhhhhhhhhccccccCccccccCcccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----hhHHHHH
Q 001340 852 RKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYR----KKVEESK 927 (1096)
Q Consensus 852 r~~lq~l~~~~~e~l~~~~~~~~~~~~~~~~~~w~~~~~~K~e~~a~~erq~aLE~el~~k~~~eeEl~----~~leE~k 927 (1096)
.+. ..+ .....++..+.+..+....++.+|++.+.+-++-+ ..+..++
T Consensus 226 --~l~-----------e~~---------------~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk 277 (312)
T smart00787 226 --KLE-----------ELE---------------EELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLK 277 (312)
T ss_pred --HHH-----------HHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 000 000 01112344445555666666666666555444433 6677777
Q ss_pred HHHHHHHHHH
Q 001340 928 RREEALENDL 937 (1096)
Q Consensus 928 kk~~~Le~el 937 (1096)
.++..|+...
T Consensus 278 ~~~~~Le~l~ 287 (312)
T smart00787 278 EQLKLLQSLT 287 (312)
T ss_pred HHHHHHHHHh
Confidence 7777777644
No 332
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=81.53 E-value=1.5e+02 Score=37.05 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcC
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNG 737 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e 737 (1096)
+.+.++.+|.+...+..+++++++.++.++.+.-+
T Consensus 169 ~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~ 203 (563)
T TIGR00634 169 AWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE 203 (563)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666777777777777777744433
No 333
>PRK08727 hypothetical protein; Validated
Probab=81.52 E-value=1.3 Score=48.81 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=28.1
Q ss_pred CCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCc-eeEEeeccCCCCcccccC
Q 001340 138 PATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN-GTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 138 ~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N-~tIfaYGqTgSGKT~Tm~ 192 (1096)
....|+||.-+.... + .+..+ . .+..|+. -.|+-||++|+||||-+.
T Consensus 12 ~~~~~~f~~f~~~~~-n--~~~~~-~----~~~~~~~~~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 12 YPSDQRFDSYIAAPD-G--LLAQL-Q----ALAAGQSSDWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CCCcCChhhccCCcH-H--HHHHH-H----HHHhccCCCeEEEECCCCCCHHHHHH
Confidence 345688988664332 2 22211 1 1222332 359999999999999875
No 334
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=81.45 E-value=1.7e+02 Score=37.52 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 001340 897 ARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDL 937 (1096)
Q Consensus 897 a~~erq~aLE~el~~k~~~eeEl~~~leE~kkk~~~Le~el 937 (1096)
+.++++.+||++|.+ .+-+- ..--+++.|++.|..|+
T Consensus 692 ~~k~kieal~~qik~--~~~~a--~~~~~lkek~e~l~~e~ 728 (762)
T PLN03229 692 TEKEKIEALEQQIKQ--KIAEA--LNSSELKEKFEELEAEL 728 (762)
T ss_pred chHHHHHHHHHHHHH--HHHHH--hccHhHHHHHHHHHHHH
Confidence 345888899988743 23222 23445667777777777
No 335
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=81.33 E-value=5.4 Score=38.78 Aligned_cols=41 Identities=34% Similarity=0.473 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHH
Q 001340 753 VDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 793 (1096)
Q Consensus 753 ~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~ 793 (1096)
+.++.+.+..-..++..||.....|.|||..|..+|++|.+
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555678889999999999999999999999888
No 336
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=81.24 E-value=0.42 Score=56.50 Aligned_cols=40 Identities=25% Similarity=0.741 Sum_probs=33.2
Q ss_pred cccccccccccceEEeCCCCcccchhhhhc---------CCCCCCCcccc
Q 001340 1048 HMCKVCFESPTAAILLPCRHFCLCKSCSLA---------CSECPICRTKI 1088 (1096)
Q Consensus 1048 ~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~---------~~~CPiCr~~i 1088 (1096)
..|.+|.+...+.+...|-|. ||..|... .-.||+|....
T Consensus 537 ~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 537 VECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred eeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 379999999999999999998 99999421 14699997653
No 337
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.07 E-value=1.7e+02 Score=37.24 Aligned_cols=91 Identities=18% Similarity=0.150 Sum_probs=56.0
Q ss_pred hHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CcchhHHHHHHHHHHHHhhhhhhHHH
Q 001340 620 SSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASM--ANASMVDMQQTVTRLMSQCNEKAFEL 697 (1096)
Q Consensus 620 ~~~~Lk~l~e~~~~~~~~~~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~--~~~~~~e~~~~v~~L~~~l~e~~~el 697 (1096)
+....+++.|++ ...+++|..+|.+.+.++..|.+.+.....-.. ...+. -|-+++..|...++
T Consensus 48 ~~~~y~~kve~a-------~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~-tLke~l~~l~~~le------ 113 (660)
T KOG4302|consen 48 CLEIYKRKVEEA-------SESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEG-TLKEQLESLKPYLE------ 113 (660)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCc-cHHHHHHHHHHHHH------
Confidence 344455677777 345677888888888888888888833322111 10011 24445555544444
Q ss_pred HHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 698 EIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 698 e~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.|+.|.++.-.++-++..+++.+-..+
T Consensus 114 --------~lr~qk~eR~~ef~el~~qie~l~~~l 140 (660)
T KOG4302|consen 114 --------GLRKQKDERRAEFKELYHQIEKLCEEL 140 (660)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777777777777777777777776
No 338
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=81.02 E-value=95 Score=34.34 Aligned_cols=90 Identities=14% Similarity=0.254 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh------cccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhH
Q 001340 643 QNLEREIQEKRRQMRILEQRIIEN------GEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCS 716 (1096)
Q Consensus 643 qkL~~elrdKeeei~~L~qki~~s------~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~ 716 (1096)
..+...+.+--.++..+.+.+... ........+..+|++.+....++|.+..-.|.........++.+...+-.
T Consensus 41 ~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~ 120 (240)
T PF12795_consen 41 AEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQ 120 (240)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 345555555555555555555322 22344556778999999999988887776666667777777777777888
Q ss_pred HHHHHHHHHHHHHHHH
Q 001340 717 ENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 717 e~~~L~~~l~~lk~~l 732 (1096)
.+.+++..++.+..++
T Consensus 121 ~l~~~~~~l~ei~~~L 136 (240)
T PF12795_consen 121 QLSEARQRLQEIRNQL 136 (240)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888888877
No 339
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=80.96 E-value=0.54 Score=52.55 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=39.6
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccceeec
Q 001340 1047 SHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISDRLFA 1094 (1096)
Q Consensus 1047 ~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-----~~CPiCr~~i~~~i~i 1094 (1096)
...|++|+.+..=+.+.+|+|-+||..|.... +-||+|-..+...+.|
T Consensus 136 ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 136 TIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred ccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 34799999999999999999999999985443 4499999888776655
No 340
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=80.60 E-value=1.1e+02 Score=34.88 Aligned_cols=20 Identities=10% Similarity=0.170 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001340 644 NLEREIQEKRRQMRILEQRI 663 (1096)
Q Consensus 644 kL~~elrdKeeei~~L~qki 663 (1096)
+.-.+++-.++..+.|..-|
T Consensus 28 ky~ediei~Kekn~~Lqk~l 47 (305)
T PF14915_consen 28 KYLEDIEILKEKNDDLQKSL 47 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46666666677777666665
No 341
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=80.44 E-value=3.3 Score=48.56 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=38.4
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHHHHhc----CCceeEEeeccCCCCcccc
Q 001340 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAME----GVNGTVFAYGVTSSGKTHT 190 (1096)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~----G~N~tIfaYGqTgSGKT~T 190 (1096)
..+.||++.+.-.--..+.+.++..++.+++. -.---|.-||+.|+|||+.
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTll 164 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQ 164 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHH
Confidence 45788888776666677778888888888774 2233577899999999975
No 342
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=80.26 E-value=94 Score=33.79 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=41.6
Q ss_pred HhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001340 761 QSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSR 840 (1096)
Q Consensus 761 ~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~ 840 (1096)
..++.....+++++..+..+...+..+-..+.. .+..+||..+..+..++-.++..+..+...+....+.++..+...
T Consensus 47 a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~--~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l 124 (221)
T PF04012_consen 47 ARVMANQKRLERKLDEAEEEAEKWEKQAELALA--AGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEEL 124 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555444433 234555555555555555555555555555555544444444444
Q ss_pred HHHH
Q 001340 841 GAAM 844 (1096)
Q Consensus 841 e~qi 844 (1096)
+..|
T Consensus 125 ~~kl 128 (221)
T PF04012_consen 125 EAKL 128 (221)
T ss_pred HHHH
Confidence 4444
No 343
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=80.21 E-value=18 Score=39.31 Aligned_cols=81 Identities=23% Similarity=0.307 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHH
Q 001340 719 KKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYA 798 (1096)
Q Consensus 719 ~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~ 798 (1096)
..+.++...++.++ ....+ .++..+.+++.+..=++|++....+.+.+.+.+..|..+.+.+..
T Consensus 130 ~~~~~~~~~lk~~~------~~~~~-----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~----- 193 (216)
T KOG1962|consen 130 EKAMKENEALKKQL------ENSSK-----LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQD----- 193 (216)
T ss_pred HHHHHHHHHHHHhh------hcccc-----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----
Confidence 55666777777777 22111 344444444334444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 001340 799 KELASAAAVELKNLAGEVTKLSLQNAKLEKELL 831 (1096)
Q Consensus 799 k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele 831 (1096)
|.++|..++..|+++++
T Consensus 194 ----------------EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 194 ----------------EYDRLLEEYSKLQEQIE 210 (216)
T ss_pred ----------------HHHHHHHHHHHHHHHHh
Confidence 88888888877777654
No 344
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=80.06 E-value=33 Score=36.76 Aligned_cols=103 Identities=22% Similarity=0.239 Sum_probs=64.5
Q ss_pred HHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHh
Q 001340 701 SADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEE 780 (1096)
Q Consensus 701 ~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee 780 (1096)
+.+...++..+.....++..++.++..++..+..... +. .+. .++..+-.++..|..+
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~------~r-~~~---------------~eR~~~l~~l~~l~~~ 118 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKK------GR-EES---------------EEREELLEELEELKKE 118 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cc-ccc---------------HHHHHHHHHHHHHHHH
Confidence 5677788888888888888888888888888843322 11 111 2334444455555555
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHhhh
Q 001340 781 NSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM----QTVNG 849 (1096)
Q Consensus 781 ~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qi----q~v~~ 849 (1096)
+..|..+++.+..- --....++..++..+++.+..|-..| +|+..
T Consensus 119 ~~~l~~el~~~~~~------------------------Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 119 LKELKKELEKYSEN------------------------DPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHhc------------------------CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55555555544331 01234456667778888888898887 66654
No 345
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=79.87 E-value=1.1e+02 Score=34.49 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001340 807 VELKNLAGEVTKLSLQNAKLEKELLAARES 836 (1096)
Q Consensus 807 ~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~ 836 (1096)
.++..+...+.........+...+...+..
T Consensus 119 ~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~ 148 (302)
T PF10186_consen 119 EQLEELQNELEERKQRLSQLQSQLARRRRQ 148 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444433
No 346
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=79.85 E-value=25 Score=32.20 Aligned_cols=42 Identities=26% Similarity=0.289 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHH
Q 001340 752 YVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 793 (1096)
Q Consensus 752 ~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~ 793 (1096)
.++.|.+++++=+..|.-|+-|+..|.+.|..|..+++.+..
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~ 46 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 46 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555655666666666666666666666666555544
No 347
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.67 E-value=42 Score=40.02 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=18.0
Q ss_pred HHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 695 FELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 695 ~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
-.|+.+..+...++..+...+++-..++.++..+..++
T Consensus 354 ~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~ 391 (493)
T KOG0804|consen 354 QYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKL 391 (493)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555554444444444444444
No 348
>PLN02939 transferase, transferring glycosyl groups
Probab=79.50 E-value=2.3e+02 Score=37.77 Aligned_cols=111 Identities=20% Similarity=0.174 Sum_probs=56.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCC--CCC-CCCchHHHHHHHHHHHhh---HHHHHHHHHHHHHhHH
Q 001340 706 ILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAG--SSG-QGTSDEYVDELRKKVQSQ---ETENEKLKLEHVQLSE 779 (1096)
Q Consensus 706 ~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~--~~~-~~e~ee~~~el~~~~~~Q---~~Eie~lk~e~~~L~E 779 (1096)
.|.+.|.....|++.|...+..||.++....|-++.. -++ ....+.++.++..++..- ..++.-++.+ .|-|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 300 (977)
T PLN02939 223 SLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYD--CWWE 300 (977)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHH--HHHH
Confidence 4677788888888888888888888885544410000 000 011223333333222111 1111111222 1333
Q ss_pred hhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001340 780 ENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQ 822 (1096)
Q Consensus 780 e~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~ 822 (1096)
-... +|-|.+.+..+.+.|...-.|..+|.++|++|++.
T Consensus 301 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (977)
T PLN02939 301 KVEN----LQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEAS 339 (977)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 2222 34455555556666666667777777777776544
No 349
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=79.47 E-value=1.9e+02 Score=36.98 Aligned_cols=69 Identities=12% Similarity=0.046 Sum_probs=37.2
Q ss_pred HHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001340 771 KLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHS 839 (1096)
Q Consensus 771 k~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~ 839 (1096)
..-+.....|..+++.+++.+.-+.-..+-.-.+++-|+..|--.+..--++..||++--..++.+.+.
T Consensus 486 ~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~ 554 (861)
T PF15254_consen 486 LENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAK 554 (861)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555444444444445555566666656666666666666655555555443
No 350
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=79.38 E-value=52 Score=34.86 Aligned_cols=26 Identities=46% Similarity=0.569 Sum_probs=10.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 707 LQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 707 lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
++++|+....+..++++.+..+...+
T Consensus 86 ~~~~l~~l~~el~~l~~~~~~~~~~l 111 (191)
T PF04156_consen 86 LQQQLQQLQEELDQLQERIQELESEL 111 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443344444444443333333
No 351
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=79.24 E-value=1e+02 Score=33.58 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=8.9
Q ss_pred HHHHHHhhHHHHHHHHH
Q 001340 813 AGEVTKLSLQNAKLEKE 829 (1096)
Q Consensus 813 ~~ev~kL~~~n~qL~~E 829 (1096)
.+....+-.+|.+|+.+
T Consensus 155 ~e~~~~i~~EN~~L~k~ 171 (206)
T PF14988_consen 155 DEFTRSIKRENQQLRKE 171 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455566666555
No 352
>PRK10869 recombination and repair protein; Provisional
Probab=79.19 E-value=1.8e+02 Score=36.43 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHH
Q 001340 640 VQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLM 687 (1096)
Q Consensus 640 ~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~ 687 (1096)
.+.+.|..+-++..++++-|.-.+.+-....+...+-.+|.+++.+|.
T Consensus 171 ~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~ 218 (553)
T PRK10869 171 RDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLA 218 (553)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 344455555555666666665555443333333334445555555543
No 353
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=79.11 E-value=1.4 Score=42.68 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=18.8
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
+...+.......++.+|++|+|||+.+
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 333333334457889999999999865
No 354
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=78.75 E-value=51 Score=33.70 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=62.7
Q ss_pred HhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001340 761 QSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSR 840 (1096)
Q Consensus 761 ~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~ 840 (1096)
..-....+.+......+..++..|...+++|.+.......-...+......+-.++..+...+....+|+...+..+.+.
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~ 127 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQR 127 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777777777777777777777777777777888888888888888888888888888766666
Q ss_pred HHHH
Q 001340 841 GAAM 844 (1096)
Q Consensus 841 e~qi 844 (1096)
..|+
T Consensus 128 ~tq~ 131 (151)
T PF11559_consen 128 KTQY 131 (151)
T ss_pred HHHH
Confidence 6554
No 355
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=78.71 E-value=93 Score=32.86 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 001340 819 LSLQNAKLEKELLAARESMHSRG 841 (1096)
Q Consensus 819 L~~~n~qL~~Ele~~k~~~~~~e 841 (1096)
+..+...|+.+++..|...-.|-
T Consensus 136 i~~ei~~lr~~iE~~K~~~lr~~ 158 (177)
T PF07798_consen 136 IDTEIANLRTEIESLKWDTLRWL 158 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445568888888776655553
No 356
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=78.63 E-value=2.3e+02 Score=37.39 Aligned_cols=64 Identities=19% Similarity=0.220 Sum_probs=29.4
Q ss_pred HHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001340 771 KLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMH 838 (1096)
Q Consensus 771 k~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~ 838 (1096)
++....|.+.+.++....+++.+ ..+..-.+..+++-+-.+-++.+....+..+++..++..+.
T Consensus 293 s~~~~~~~e~~~k~~~~~ek~~~----~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~ 356 (1072)
T KOG0979|consen 293 SQKQRELNEALAKVQEKFEKLKE----IEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQ 356 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33334444444444444444333 22223334444555555555555555555555555554443
No 357
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=78.48 E-value=2e+02 Score=36.55 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH---hhHHHHHHHHHHHHHHHHhhHH
Q 001340 897 ARKQREAALEAALAEKEFLEDEYR---KKVEESKRREEALENDLANMWV 942 (1096)
Q Consensus 897 a~~erq~aLE~el~~k~~~eeEl~---~~leE~kkk~~~Le~el~~~~~ 942 (1096)
.+.++...|-.-+.++-.+|+.|+ ...+-+.++..+++.++..|+-
T Consensus 1060 RRDELh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re 1108 (1480)
T COG3096 1060 RRDELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMRE 1108 (1480)
T ss_pred HHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 455677777777777888888776 6667777888888888866643
No 358
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=78.47 E-value=1.7e+02 Score=35.80 Aligned_cols=54 Identities=26% Similarity=0.230 Sum_probs=30.3
Q ss_pred HHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001340 771 KLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 834 (1096)
Q Consensus 771 k~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k 834 (1096)
+.-..-|.|....+..+++.+-. .-..+.-.|..+|..|...|.++..|..++-
T Consensus 139 ~~ll~Pl~e~l~~f~~~v~~~~~----------~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt 192 (475)
T PRK10361 139 NSLLSPLREQLDGFRRQVQDSFG----------KEAQERHTLAHEIRNLQQLNAQMAQEAINLT 192 (475)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555543322 2223334566677788888888888754433
No 359
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=78.28 E-value=7.7 Score=37.89 Aligned_cols=41 Identities=34% Similarity=0.451 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHH
Q 001340 753 VDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 793 (1096)
Q Consensus 753 ~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~ 793 (1096)
+..+.+.+..--.++..||+....|.|||..|..+|++|.+
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555677888999999999999999999999887
No 360
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=77.80 E-value=75 Score=33.16 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=10.4
Q ss_pred HHHHHHHhHHhhhhHHHHHHHHH
Q 001340 770 LKLEHVQLSEENSGLHVQNQKLA 792 (1096)
Q Consensus 770 lk~e~~~L~Ee~~~L~~e~~kl~ 792 (1096)
++++...|......|..++.+|.
T Consensus 87 ~~~e~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 87 WRQERKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 361
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=77.72 E-value=1.6e+02 Score=35.10 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
+++.||-+++..+.++.+|+..+.+||...
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~ 327 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLA 327 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 362
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=77.68 E-value=1.7e+02 Score=35.26 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=26.3
Q ss_pred HHhHHHHHHHHHh---h---hHHHHHHHHHHHHHHHHHH
Q 001340 701 SADNRILQEQLQN---K---CSENKKLQEKVNLLEQQLA 733 (1096)
Q Consensus 701 ~ae~~~lqeqL~~---a---~~e~~~L~~~l~~lk~~l~ 733 (1096)
.-|.+.+|+.|.. - -.|-+.|.++|+.||.||.
T Consensus 201 ~~E~k~~qeel~~~~~~~~d~~EkE~Ll~EIq~Lk~qL~ 239 (488)
T PF06548_consen 201 KIELKRVQEELEEYRNFSFDMGEKEVLLEEIQDLKSQLQ 239 (488)
T ss_pred HhHHHHHHHHHHhccccccCcchHHHHHHHHHHHHHHHH
Confidence 4488888888752 2 4577889999999999995
No 363
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=77.66 E-value=26 Score=39.07 Aligned_cols=17 Identities=35% Similarity=0.519 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001340 897 ARKQREAALEAALAEKE 913 (1096)
Q Consensus 897 a~~erq~aLE~el~~k~ 913 (1096)
++..|...|...+..-+
T Consensus 128 eR~~Rl~~L~~~l~~~d 144 (251)
T PF11932_consen 128 ERQERLARLRAMLDDAD 144 (251)
T ss_pred HHHHHHHHHHHhhhccC
Confidence 66777777777765444
No 364
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=77.44 E-value=1.6 Score=51.91 Aligned_cols=90 Identities=19% Similarity=0.273 Sum_probs=51.4
Q ss_pred EEEEEEeCCCChhh-hhcCCeEEEeeCCCEEEe------------cCCCCCcceecceecCCCCChhHHHhhhhHHHHH-
Q 001340 102 ISVTIRFRPLSERE-FQRGDEIAWYADGDKIVR------------NEYNPATAYAFDRVFGPHANSQEVYDVAARPVVK- 167 (1096)
Q Consensus 102 I~V~vRvRP~~~~E-~~~~~~~~~~~~~~~~~~------------~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~- 167 (1096)
-..+|++.+..+.+ +..|..+........++. ........++|+.|-+.+..-+.+.+.+..|+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~ 168 (398)
T PTZ00454 89 SNYYVRILSTLNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCP 168 (398)
T ss_pred CEEEEecccccCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCH
Confidence 35677777766544 345555544332221110 0011223467888877666666666666556553
Q ss_pred HHhc--C--CceeEEeeccCCCCccccc
Q 001340 168 AAME--G--VNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 168 ~~l~--G--~N~tIfaYGqTgSGKT~Tm 191 (1096)
..+. | ....|+-||++|+|||+..
T Consensus 169 ~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 169 ELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred HHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 2333 2 2456889999999999876
No 365
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=77.43 E-value=92 Score=34.79 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=11.3
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLE 729 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk 729 (1096)
+++..++.|..++..+..|.+++..++
T Consensus 20 e~~~a~~~L~e~e~~a~~Leek~k~ae 46 (246)
T PF00769_consen 20 EMRRAQEALEESEETAEELEEKLKQAE 46 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333
No 366
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=77.17 E-value=1.8e+02 Score=35.35 Aligned_cols=24 Identities=8% Similarity=-0.032 Sum_probs=10.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 709 EQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 709 eqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.++......+..++.++..++.++
T Consensus 172 ~~~~~~~~~i~~~~~~~~~~~~~~ 195 (457)
T TIGR01000 172 KTKAQLDQQISKTDQKLQDYQALK 195 (457)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444
No 367
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=76.96 E-value=1.4 Score=41.33 Aligned_cols=38 Identities=32% Similarity=0.804 Sum_probs=30.3
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccc
Q 001340 1047 SHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISD 1090 (1096)
Q Consensus 1047 ~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~~~CPiCr~~i~~ 1090 (1096)
...|.+| ..-|-.+=.| +|..|+..-..|.+|...|..
T Consensus 44 ~~~C~~C----K~~v~q~g~~--YCq~CAYkkGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKIC----KTKVHQPGAK--YCQTCAYKKGICAMCGKKILD 81 (90)
T ss_pred Ccccccc----ccccccCCCc--cChhhhcccCcccccCCeecc
Confidence 3479999 6666555555 599999999999999999854
No 368
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=76.92 E-value=1.2e+02 Score=33.87 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=11.1
Q ss_pred HHHHHHhHHhhhhHHHHHHHHHH
Q 001340 771 KLEHVQLSEENSGLHVQNQKLAE 793 (1096)
Q Consensus 771 k~e~~~L~Ee~~~L~~e~~kl~~ 793 (1096)
.+++..+.+++..|..+...+..
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~ 63 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLER 63 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555444444
No 369
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=76.59 E-value=2.9 Score=50.37 Aligned_cols=89 Identities=17% Similarity=0.280 Sum_probs=48.0
Q ss_pred EEEEEeCCCChhh-hhcCCeEEEeeCCCEEEecC---CC---------CCcceecceecCCCCChhHHHhhhhHHHHHHH
Q 001340 103 SVTIRFRPLSERE-FQRGDEIAWYADGDKIVRNE---YN---------PATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1096)
Q Consensus 103 ~V~vRvRP~~~~E-~~~~~~~~~~~~~~~~~~~~---~~---------~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~ 169 (1096)
..+|++.++.+.+ +..|..+.+......++..- .+ ..-.-+|+.|.+-+..-+.+.+.+..|+...-
T Consensus 128 ~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~ 207 (438)
T PTZ00361 128 EYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPE 207 (438)
T ss_pred EEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHH
Confidence 5788988887765 46676666655433332111 00 01113455554444444455554444544321
Q ss_pred -hc--CC--ceeEEeeccCCCCccccc
Q 001340 170 -ME--GV--NGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 170 -l~--G~--N~tIfaYGqTgSGKT~Tm 191 (1096)
+. |. .-.|+-||++|+|||++.
T Consensus 208 ~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 208 LYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred HHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 22 21 124778999999999876
No 370
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=76.42 E-value=95 Score=31.76 Aligned_cols=75 Identities=19% Similarity=0.144 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001340 767 NEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 841 (1096)
Q Consensus 767 ie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e 841 (1096)
+.+.+.+...|..-.-.|..+++..-.+-.+..-=|..+..++..|-.++..+.....+|..||.+.+...-.+.
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444333333333333333444444555555555555555555555555444443
No 371
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=76.23 E-value=91 Score=34.55 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001340 767 NEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 829 (1096)
Q Consensus 767 ie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~E 829 (1096)
|++|+.+...|..|+.....++.....+-..--..++.++.+.....+.+.++..+-..|..+
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~ 96 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDE 96 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555544333333455555555544444444444433333333
No 372
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.22 E-value=32 Score=42.53 Aligned_cols=35 Identities=34% Similarity=0.445 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHH
Q 001340 893 LELQARKQREAALEAALAEKEFLEDEYRKKVEESK 927 (1096)
Q Consensus 893 ~e~~a~~erq~aLE~el~~k~~~eeEl~~~leE~k 927 (1096)
.++.++..++..|+.+|.++...-++|..++.+++
T Consensus 474 rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 474 REIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888887777766666666665555
No 373
>PRK06921 hypothetical protein; Provisional
Probab=76.12 E-value=1.9 Score=48.46 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=24.1
Q ss_pred HHhhhhHHHHHHHhc---CCceeEEeeccCCCCcccccC
Q 001340 157 VYDVAARPVVKAAME---GVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 157 Vy~~~~~plV~~~l~---G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
+|. .+...++.+-. +....|+-||++|+||||.+.
T Consensus 98 ~~~-~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~ 135 (266)
T PRK06921 98 AYE-CAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLT 135 (266)
T ss_pred HHH-HHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHH
Confidence 443 44556665532 234568899999999999885
No 374
>PRK10698 phage shock protein PspA; Provisional
Probab=76.11 E-value=1.3e+02 Score=33.12 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=36.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHH--------------HHHHHHHHHHHHHHhh
Q 001340 755 ELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASA--------------AAVELKNLAGEVTKLS 820 (1096)
Q Consensus 755 el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~a--------------a~~qlk~l~~ev~kL~ 820 (1096)
+++..+...+.+-..+++.+..+......+..+=..+.. -+..+||.. ++.++......+.+|.
T Consensus 42 ~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~--~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~ 119 (222)
T PRK10698 42 EVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALR--KEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMK 119 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555333333 122334444 4444444444444444
Q ss_pred HHHHHHHHHHHHHH
Q 001340 821 LQNAKLEKELLAAR 834 (1096)
Q Consensus 821 ~~n~qL~~Ele~~k 834 (1096)
.+..+|+..+..+|
T Consensus 120 ~~l~~L~~ki~eak 133 (222)
T PRK10698 120 KEIGELENKLSETR 133 (222)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 375
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=76.06 E-value=1.2e+02 Score=32.80 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=14.0
Q ss_pred HHHHHHhHHhhhhHHHHHHHHHH
Q 001340 771 KLEHVQLSEENSGLHVQNQKLAE 793 (1096)
Q Consensus 771 k~e~~~L~Ee~~~L~~e~~kl~~ 793 (1096)
++....|.+.......++..+..
T Consensus 149 EkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 149 EKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666655554
No 376
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=76.06 E-value=1.9e+02 Score=34.97 Aligned_cols=82 Identities=20% Similarity=0.230 Sum_probs=38.3
Q ss_pred HHHHHHHHHhh---HHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001340 753 VDELRKKVQSQ---ETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 829 (1096)
Q Consensus 753 ~~el~~~~~~Q---~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~E 829 (1096)
+.||.-+..+| +-=|.+||..+..|.|+|-....+.--+..---.--+..+...-.|..-..+-+-|+.+..++...
T Consensus 347 vkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~n 426 (527)
T PF15066_consen 347 VKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKAN 426 (527)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 34554333333 234667788888888888776665433322111222222223333333333444444444444444
Q ss_pred HHHHH
Q 001340 830 LLAAR 834 (1096)
Q Consensus 830 le~~k 834 (1096)
.-.++
T Consensus 427 yv~LQ 431 (527)
T PF15066_consen 427 YVHLQ 431 (527)
T ss_pred HHHHH
Confidence 33333
No 377
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=75.85 E-value=2.3 Score=50.49 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=31.4
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHH-HHhcC----CceeEEeeccCCCCccccc
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAMEG----VNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G----~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+.||.|.+-+..-+.+.+.+..|+.. ..+.. ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 456666665555445555555555543 22322 2345889999999999765
No 378
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=75.63 E-value=1 Score=50.84 Aligned_cols=41 Identities=32% Similarity=0.791 Sum_probs=29.1
Q ss_pred cccccccc----ccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001340 1049 MCKVCFES----PTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1090 (1096)
Q Consensus 1049 ~C~IC~~~----~~~~vl~pCgH~~~C~~C~~~~-----~~CPiCr~~i~~ 1090 (1096)
.|+.|++. .++..-.|||-. +|..|.... ..||.||...+.
T Consensus 16 ~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 59999984 334444566666 899997665 459999987553
No 379
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=75.47 E-value=0.74 Score=52.01 Aligned_cols=50 Identities=18% Similarity=0.610 Sum_probs=32.6
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcc--cccceeecc
Q 001340 1046 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRT--KISDRLFAF 1095 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCr~--~i~~~i~if 1095 (1096)
+...|+||+....+-.++----+|||..|.... ..||+-.. .++..+++|
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 445899998865554443443355999997654 67998544 455555555
No 380
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=75.24 E-value=1.5e+02 Score=37.94 Aligned_cols=93 Identities=15% Similarity=0.247 Sum_probs=52.5
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhh
Q 001340 642 IQNLEREIQE------KRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKC 715 (1096)
Q Consensus 642 ~qkL~~elrd------Keeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~ 715 (1096)
++.|+.++.+ .+++|+.++.-|..++..+.. .--.++...|.++..+.+.. ++--+++.+.... +.|.-..
T Consensus 560 k~ei~kki~e~~~~~~~kek~ea~~aev~~~g~s~~~-~~~~~lkeki~~~~~Ei~~e-ie~v~~S~gL~~~-~~~k~e~ 636 (762)
T PLN03229 560 KAEINKKFKEVMDRPEIKEKMEALKAEVASSGASSGD-ELDDDLKEKVEKMKKEIELE-LAGVLKSMGLEVI-GVTKKNK 636 (762)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCccccC-CCCHHHHHHHHHHHHHHHHH-HHHHHhccCchhh-hhhhhhh
Confidence 3445555555 788888888888775433222 22236777888877766522 1112234444444 3332111
Q ss_pred --H---HHHHHHHHHHHHHHHHHhhcC
Q 001340 716 --S---ENKKLQEKVNLLEQQLACQNG 737 (1096)
Q Consensus 716 --~---e~~~L~~~l~~lk~~l~~~~e 737 (1096)
+ =...+..+|..|.+++.+++|
T Consensus 637 a~~~~~p~~~~k~KIe~L~~eIkkkIe 663 (762)
T PLN03229 637 DTAEQTPPPNLQEKIESLNEEINKKIE 663 (762)
T ss_pred cccccCCChhhHHHHHHHHHHHHHHHH
Confidence 1 134467788888888877777
No 381
>PF13245 AAA_19: Part of AAA domain
Probab=75.22 E-value=1.6 Score=39.51 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=18.0
Q ss_pred HHHHhcCCceeEEeeccCCCCcccccC
Q 001340 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
|..++. -+..++..|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 444555 33444558999999999975
No 382
>PRK10436 hypothetical protein; Provisional
Probab=75.05 E-value=1.5 Score=53.16 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=23.5
Q ss_pred HHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.+..++..-+|.|+..|+||||||.||.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 3455666778999999999999999985
No 383
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=74.82 E-value=1.2 Score=42.57 Aligned_cols=17 Identities=35% Similarity=0.194 Sum_probs=14.8
Q ss_pred EEeeccCCCCcccccCC
Q 001340 177 VFAYGVTSSGKTHTMHG 193 (1096)
Q Consensus 177 IfaYGqTgSGKT~Tm~G 193 (1096)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57899999999999863
No 384
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=74.74 E-value=1.1 Score=50.22 Aligned_cols=41 Identities=32% Similarity=1.027 Sum_probs=28.8
Q ss_pred cccccccccccceE--EeCCCCcccchhhhhcC--CCCCCCcccccc
Q 001340 1048 HMCKVCFESPTAAI--LLPCRHFCLCKSCSLAC--SECPICRTKISD 1090 (1096)
Q Consensus 1048 ~~C~IC~~~~~~~v--l~pCgH~~~C~~C~~~~--~~CPiCr~~i~~ 1090 (1096)
..|.-| +.+.-+. ++||-|. ||-+|+..- +.||.|--.|..
T Consensus 91 HfCd~C-d~PI~IYGRmIPCkHv-FCl~CAr~~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 91 HFCDRC-DFPIAIYGRMIPCKHV-FCLECARSDSDKICPLCDDRVQR 135 (389)
T ss_pred Eeeccc-CCcceeeecccccchh-hhhhhhhcCccccCcCcccHHHH
Confidence 468888 2222221 3699998 999997665 479999877654
No 385
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=74.69 E-value=2.2e+02 Score=35.10 Aligned_cols=120 Identities=17% Similarity=0.180 Sum_probs=65.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHH----------HHHHhHHh
Q 001340 711 LQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKL----------EHVQLSEE 780 (1096)
Q Consensus 711 L~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~----------e~~~L~Ee 780 (1096)
|+.|+.++...+++|+.+-+.+-.-.+.....-......-+++..++.....=++||+..++ -+.....+
T Consensus 276 ld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~e 355 (570)
T COG4477 276 LDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKE 355 (570)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHH
Confidence 46777777777788877777763322211111122234445555554444444555555533 24455566
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001340 781 NSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 830 (1096)
Q Consensus 781 ~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~El 830 (1096)
...|....+.+.+.-...+.-++.+.+.++.+.+.++..+....++.+.|
T Consensus 356 L~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L 405 (570)
T COG4477 356 LKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHL 405 (570)
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 66666666666666666666666666655555555555444444444433
No 386
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=74.37 E-value=2.4 Score=48.19 Aligned_cols=36 Identities=25% Similarity=0.234 Sum_probs=23.9
Q ss_pred HHhhhhHHHHHHHhcC-CceeEEeeccCCCCcccccC
Q 001340 157 VYDVAARPVVKAAMEG-VNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 157 Vy~~~~~plV~~~l~G-~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
+++..+..++.+.+.| .---.+-||+.|+|||.|..
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 3344444455555554 44457889999999999974
No 387
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=74.30 E-value=2.8 Score=53.84 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=17.9
Q ss_pred cCCceeEEeeccCCCCcccccC
Q 001340 171 EGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 171 ~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.|-+.+||.||++|+|||.|+-
T Consensus 778 sgpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 778 SGSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred CCCCceEEEECCCCCCHHHHHH
Confidence 3455678899999999999874
No 388
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=74.03 E-value=1.6 Score=51.89 Aligned_cols=44 Identities=25% Similarity=0.847 Sum_probs=35.4
Q ss_pred ccccccccccccceEE-eCCCCcccchhhhhcC----CCCCCCcccccce
Q 001340 1047 SHMCKVCFESPTAAIL-LPCRHFCLCKSCSLAC----SECPICRTKISDR 1091 (1096)
Q Consensus 1047 ~~~C~IC~~~~~~~vl-~pCgH~~~C~~C~~~~----~~CPiCr~~i~~~ 1091 (1096)
...|.+|+.--.+.+. ..|||. ||..|.... ..||.|+..+...
T Consensus 21 ~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 21 NLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred cccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchh
Confidence 3489999998888888 599999 999995443 5699998876553
No 389
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=74.01 E-value=1.7 Score=54.17 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=23.9
Q ss_pred HHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.+..++..-+|.|+..|+||||||.||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4566777788999999999999999985
No 390
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=73.98 E-value=2.5 Score=42.10 Aligned_cols=60 Identities=25% Similarity=0.664 Sum_probs=38.7
Q ss_pred HHHHHHhhhcCCCCCcccccccccccccceEEe-C---CCCcccchhhhhcC-------CCCCCCcccccce
Q 001340 1031 EMKEKEQKYQGNGDPNSHMCKVCFESPTAAILL-P---CRHFCLCKSCSLAC-------SECPICRTKISDR 1091 (1096)
Q Consensus 1031 ~~k~~~~~~~~~~~~~~~~C~IC~~~~~~~vl~-p---CgH~~~C~~C~~~~-------~~CPiCr~~i~~~ 1091 (1096)
.+.+..+--..-.++.-.+|.||.+...+-=|+ | || +-+|..|-..+ ++||+|+..|...
T Consensus 64 ~~n~r~qvmnvF~d~~lYeCnIC~etS~ee~FLKPneCCg-Y~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 64 AINRRLQVMNVFLDPKLYECNICKETSAEERFLKPNECCG-YSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred HHHHHHHHheeecCCCceeccCcccccchhhcCCcccccc-hHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 333333333333344445899999977766665 2 56 55999993332 7899999998764
No 391
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=73.88 E-value=1.8 Score=48.49 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=19.2
Q ss_pred eeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEE
Q 001340 256 VEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIF 299 (1096)
Q Consensus 256 v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If 299 (1096)
|+..+.+.|.++.....+..+|. + .....+||.|+|+
T Consensus 63 vK~~tvh~vstpq~sKai~~k~q---H----siSytlsrnqsVv 99 (429)
T KOG3842|consen 63 VKPSTVHIVSTPQASKAISDKGQ---H----SISYTLSRNQSVV 99 (429)
T ss_pred cccceeEEecChhhhhhhhcccc---c----eEEEEecCCceEE
Confidence 34555666666655544443322 2 2334566777665
No 392
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=73.77 E-value=1e+02 Score=30.77 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhHHhhhhHHHHHHHHHH
Q 001340 765 TENEKLKLEHVQLSEENSGLHVQNQKLAE 793 (1096)
Q Consensus 765 ~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~ 793 (1096)
++|..++-|+..|.++...|..+.+.+.+
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~~r~~l~~ 51 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEAERDELRE 51 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666655555555
No 393
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.76 E-value=2.1e+02 Score=34.46 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHH
Q 001340 751 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLH 785 (1096)
Q Consensus 751 e~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~ 785 (1096)
.-+.|+...+.+|.++|-+.--+-..|+-+...+.
T Consensus 389 qrikEi~gniRKq~~DI~Kil~etreLqkq~ns~s 423 (521)
T KOG1937|consen 389 QRIKEIDGNIRKQEQDIVKILEETRELQKQENSES 423 (521)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444444444443333
No 394
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=73.55 E-value=54 Score=38.73 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=14.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHhhhh
Q 001340 755 ELRKKVQSQETENEKLKLEHVQLSEENSG 783 (1096)
Q Consensus 755 el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~ 783 (1096)
-+++++..-..|+.+|+.|...|.|+--+
T Consensus 45 ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 45 AIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544445555555555555554444
No 395
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=73.48 E-value=1.5e+02 Score=32.73 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=27.9
Q ss_pred HHhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001340 701 SADNRILQEQLQNKCSENKKLQEKVNLLEQQ 731 (1096)
Q Consensus 701 ~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~ 731 (1096)
..+...++..+..+-.++..++++|..++..
T Consensus 37 ~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~ 67 (240)
T PF12795_consen 37 KKRAAEYQKQIDQAPKEIRELQKELEALKSQ 67 (240)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc
Confidence 5588899999999999999999999999876
No 396
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=73.45 E-value=2 Score=52.54 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=23.6
Q ss_pred HHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.+..++..-++.|+..|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4556677778899999999999999985
No 397
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=73.18 E-value=2.4 Score=51.29 Aligned_cols=51 Identities=22% Similarity=0.344 Sum_probs=32.4
Q ss_pred CcceecceecCCCCChhHHHhhhhHHHHHHH--hcC--CceeEEeeccCCCCcccccC
Q 001340 139 ATAYAFDRVFGPHANSQEVYDVAARPVVKAA--MEG--VNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 139 ~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~--l~G--~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
...|+||.-+- +..+...|. ++..+.... ..| ||. +|-||++|+||||.+.
T Consensus 105 ~~~~tFdnFv~-g~~N~~a~~-~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 105 DPLMTFANFLV-TPENDLPHR-ILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQ 159 (445)
T ss_pred Cccccccceee-CCcHHHHHH-HHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHH
Confidence 34689998664 345555554 444444332 223 454 6789999999999875
No 398
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=73.17 E-value=31 Score=41.12 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 704 NRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 704 ~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.+.++.+|.+-..++..|++..+..+.++
T Consensus 391 ~~k~~kel~~~~E~n~~l~knq~vw~~kl 419 (493)
T KOG0804|consen 391 LKKCQKELKEEREENKKLIKNQDVWRGKL 419 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34455666666666666666666666665
No 399
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=73.09 E-value=3 Score=48.93 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=29.9
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHH-Hhc--CC--ceeEEeeccCCCCccccc
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVKA-AME--GV--NGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~-~l~--G~--N~tIfaYGqTgSGKT~Tm 191 (1096)
.+.||.|.+-+..-+.+.+.+..|+... .+. |. ...|+-||++|+|||+.+
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 4556666655444445555444443321 121 21 335899999999999876
No 400
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=72.86 E-value=17 Score=39.62 Aligned_cols=57 Identities=35% Similarity=0.315 Sum_probs=39.9
Q ss_pred HHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 001340 698 EIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQL 777 (1096)
Q Consensus 698 e~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L 777 (1096)
+...+|...|+++|+.+..+...++++++.|+.|. |.+.+|...|
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~-----------------------------------e~~~~EydrL 198 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQS-----------------------------------EGLQDEYDRL 198 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHcccHHHHH
Confidence 33455677777777788888888888888877777 5556666666
Q ss_pred HHhhhhHHHHHH
Q 001340 778 SEENSGLHVQNQ 789 (1096)
Q Consensus 778 ~Ee~~~L~~e~~ 789 (1096)
.|+++.|..+.+
T Consensus 199 lee~~~Lq~~i~ 210 (216)
T KOG1962|consen 199 LEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHh
Confidence 777766666554
No 401
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=72.34 E-value=2.2e+02 Score=34.09 Aligned_cols=114 Identities=20% Similarity=0.182 Sum_probs=64.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHH
Q 001340 707 LQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHV 786 (1096)
Q Consensus 707 lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~ 786 (1096)
--+.|++.......|++..+-|+.+.|+ +.....+++.|++-.+.+.......+....+-|.+-..-+..
T Consensus 214 ~~k~l~al~llv~tLee~~~~LktqIV~----------sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qt 283 (446)
T KOG4438|consen 214 KNKILNALKLLVVTLEENANCLKTQIVQ----------SPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQT 283 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 3456677777888888888888888842 223456677787777777666666666666666654444332
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH------HHHHHhhHHHHHHHHHHHHHH
Q 001340 787 QNQKLAEEASYAKELASAAAVELKNLA------GEVTKLSLQNAKLEKELLAAR 834 (1096)
Q Consensus 787 e~~kl~~e~~~~k~la~aa~~qlk~l~------~ev~kL~~~n~qL~~Ele~~k 834 (1096)
+-.|-+....++..-.++++.+- ++.-.|+.++.-...|++..+
T Consensus 284 ----i~~e~~~~lk~i~~~~~e~d~~Et~~v~lke~~~Le~q~e~~~~e~~~lk 333 (446)
T KOG4438|consen 284 ----IEKELKALLKKISSDGVEYDSLETKVVELKEILELEDQIELNQLELEKLK 333 (446)
T ss_pred ----HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444443333332 233444444444444455544
No 402
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=72.22 E-value=1.3 Score=43.09 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=13.5
Q ss_pred ceeEEeeccCCCCcccccC
Q 001340 174 NGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~ 192 (1096)
..+++.||.+|+|||.++.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 3578999999999999864
No 403
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=72.11 E-value=2.2 Score=43.34 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=20.2
Q ss_pred HHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
++..++.|.| ++..|+||+|||+...
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 4455666766 7889999999999864
No 404
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.83 E-value=2.5e+02 Score=34.57 Aligned_cols=135 Identities=16% Similarity=0.125 Sum_probs=71.6
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCC--CCCC-CCCCCC------------------chHHHHHHH-H--
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGD--KSAG-SSGQGT------------------SDEYVDELR-K-- 758 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~--~~~~-~~~~~e------------------~ee~~~el~-~-- 758 (1096)
+...|..++..-+.+|+.....|+.=...++.++|. .+.+ ...+.. .+..|.-|+ +
T Consensus 244 e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlEmLq~kgmg~~~~~~df~~~~~~a~~~~h~r~~~er~IerLkeqr~ 323 (654)
T KOG4809|consen 244 EQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLEMLQRKGMGRSNQPRDFTKANLSAHEMAHMRMKVERIIERLKEQRE 323 (654)
T ss_pred HHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccccchhhHHHHHHhHHHHHhhhchHHHHHHHhcchhh
Confidence 556677777777777777777777777777766661 0000 000000 111111110 0
Q ss_pred -HHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001340 759 -KVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESM 837 (1096)
Q Consensus 759 -~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~ 837 (1096)
.-....+|||.++++.+.|-|-...|....--..+.--..++.|++++.- ..|+.....-|.--|+.++++.
T Consensus 324 rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~-------glk~ds~Lk~leIalEqkkEec 396 (654)
T KOG4809|consen 324 RDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASA-------GLKRDSKLKSLEIALEQKKEEC 396 (654)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhhhhhhHHHHHHHHHHHHH
Confidence 01123568888888888888888877764333222222233334333322 2233333344444577777777
Q ss_pred HHHHHHH
Q 001340 838 HSRGAAM 844 (1096)
Q Consensus 838 ~~~e~qi 844 (1096)
...++|+
T Consensus 397 ~kme~qL 403 (654)
T KOG4809|consen 397 SKMEAQL 403 (654)
T ss_pred HHHHHHH
Confidence 7777777
No 405
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=71.57 E-value=1.9 Score=48.23 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=16.1
Q ss_pred ceeEEeeccCCCCcccccC
Q 001340 174 NGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.+.|+..|.||||||.+|.
T Consensus 127 ~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp TEEEEEEESTTSSHHHHHH
T ss_pred ceEEEEECCCccccchHHH
Confidence 5677778999999999974
No 406
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=71.19 E-value=57 Score=34.93 Aligned_cols=60 Identities=25% Similarity=0.243 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 001340 766 ENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 831 (1096)
Q Consensus 766 Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele 831 (1096)
+|..|+.++..|..+...|..+.+.+.. ........+.|...++|+.|..+|.+|..+|+
T Consensus 128 ~i~~L~~e~~~L~~~~~~l~~~~e~~ek------~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 128 EIEELEEEKEELEKQVQELKNKCEQLEK------REEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444332 22223456677888899999999999988875
No 407
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=71.15 E-value=2e+02 Score=33.01 Aligned_cols=51 Identities=25% Similarity=0.169 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhHHHHH---HHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHH
Q 001340 752 YVDELRKKVQSQETENE---KLKLEHVQLSEENSGLHVQNQKLAEEASYAKELA 802 (1096)
Q Consensus 752 ~~~el~~~~~~Q~~Eie---~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la 802 (1096)
.+++|.+++-++|+.-. +||..-..+..+.++--.+.++..+-...+|+..
T Consensus 53 kl~el~Kk~~k~I~ksrpf~elk~~er~~r~e~QkAa~~FeRat~vl~~AkeqV 106 (426)
T KOG2008|consen 53 KLDELVKKIGKAIEKSRPFWELKRVERQARLEAQKAAQDFERATEVLRAAKEQV 106 (426)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443222 2233334444444444445555444444444333
No 408
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=71.12 E-value=1.5e+02 Score=31.81 Aligned_cols=106 Identities=26% Similarity=0.310 Sum_probs=58.8
Q ss_pred hhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHH
Q 001340 690 CNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEK 769 (1096)
Q Consensus 690 l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~ 769 (1096)
.++-.-.|-+...|.....++...+++.|.+|..++..+.+-+ ++ +.+.-.+.-...+.
T Consensus 83 ~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nl------k~---------------l~~~ee~~~q~~d~ 141 (205)
T KOG1003|consen 83 YEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNL------KS---------------LSAKEEKLEQKEEK 141 (205)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH------HH---------------HHHHHHHHhhhHHH
Confidence 3444445555566777777777777777777777776666655 11 11111112223344
Q ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001340 770 LKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESM 837 (1096)
Q Consensus 770 lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~ 837 (1096)
|+.+...|.+ ..+.+...-+.....|.+|+.+.-.|+..+...+...
T Consensus 142 ~e~~ik~ltd---------------------KLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky 188 (205)
T KOG1003|consen 142 YEEELKELTD---------------------KLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKY 188 (205)
T ss_pred HHHHHHHHHH---------------------HHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHH
Confidence 4444444444 2222333333444578888888888887777776653
No 409
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=70.94 E-value=5.9 Score=46.31 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCC-CCCcccccccccccccceEEe
Q 001340 1020 PLVARLKARMQEMKEKEQKYQGN-GDPNSHMCKVCFESPTAAILL 1063 (1096)
Q Consensus 1020 ~~~~~l~~~l~~~k~~~~~~~~~-~~~~~~~C~IC~~~~~~~vl~ 1063 (1096)
...++..+...+.-.....+... .......|.-|+....++.|.
T Consensus 243 tl~drF~e~F~~~V~~Np~y~~~~~~~e~e~CigC~~~~~~vkl~ 287 (358)
T PF10272_consen 243 TLSDRFVEAFKEQVEQNPRYSYPESGQELEPCIGCMQAQPNVKLV 287 (358)
T ss_pred CHHHHHHHHHHHHHHhCCccccCCCccccCCccccccCCCCcEEE
Confidence 45556655555544444444444 344566899999999998885
No 410
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=70.82 E-value=1.9e+02 Score=32.65 Aligned_cols=140 Identities=22% Similarity=0.237 Sum_probs=70.9
Q ss_pred HHHHHHhhhhhhHHHHHH-HHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHH----H
Q 001340 683 VTRLMSQCNEKAFELEIK-SADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDEL----R 757 (1096)
Q Consensus 683 v~~L~~~l~e~~~ele~k-~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el----~ 757 (1096)
+..++++|.+ .+.+ ......|++||.+..+++...+++|.-|..=. +.+.+ ..--.|.+| .
T Consensus 65 l~~ak~eLqe----~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYk----D~EYP------vK~vqIa~L~rqlq 130 (258)
T PF15397_consen 65 LQQAKAELQE----WEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYK----DHEYP------VKAVQIANLVRQLQ 130 (258)
T ss_pred HHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhh------HHHHHHHHHHHHHH
Confidence 4444555543 2333 34788899999999999999999888876544 00000 000111122 1
Q ss_pred HHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001340 758 KKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELAS-AAAVELKNLAGEVTKLSLQNAKLEKELLAARES 836 (1096)
Q Consensus 758 ~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~-aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~ 836 (1096)
+.-..|..|++++..-.. .+-..|..+.+.-.. ++-+ ++.--+..+-.-+-+...+|..+..++..-++.
T Consensus 131 ~lk~~qqdEldel~e~~~---~el~~l~~~~q~k~~------~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~ 201 (258)
T PF15397_consen 131 QLKDSQQDELDELNEMRQ---MELASLSRKIQEKKE------EILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREE 201 (258)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH------HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122223333333322111 111112211111111 1112 233333445555666678888888888888888
Q ss_pred HHHHHHHHH
Q 001340 837 MHSRGAAMQ 845 (1096)
Q Consensus 837 ~~~~e~qiq 845 (1096)
+.+++..|.
T Consensus 202 i~el~e~I~ 210 (258)
T PF15397_consen 202 IDELEEEIP 210 (258)
T ss_pred HHHHHHHHH
Confidence 888887664
No 411
>PRK09183 transposase/IS protein; Provisional
Probab=70.46 E-value=2.4 Score=47.44 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=26.4
Q ss_pred cceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccCC
Q 001340 144 FDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1096)
Q Consensus 144 FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G 193 (1096)
||.-|.+..+...|..-..-.+ +-.|.| |+-||++|+||||.+.+
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~---i~~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSF---IERNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCc---hhcCCe--EEEEeCCCCCHHHHHHH
Confidence 4444555555554443211112 234544 66799999999998753
No 412
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=70.43 E-value=2.4 Score=49.42 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=20.9
Q ss_pred HHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.+..++.--.+.|+..|+||||||.||.
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 3344444345789999999999999985
No 413
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=70.41 E-value=2.5 Score=49.81 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=17.3
Q ss_pred CceeEEeeccCCCCcccccC
Q 001340 173 VNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 173 ~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.++.|+..|+||||||+||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 46678899999999999984
No 414
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=70.30 E-value=3.6 Score=45.98 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=30.5
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccCC
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G 193 (1096)
.|.|..+-.....+..+|..+ ..++..+-.| ..++-||++|+||||-..+
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~~-~~~~~~~~~~--~nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALEDL-ASLVEFFERG--ENLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CcccccccCCcchhHHHHHHH-HHHHHHhccC--CcEEEECCCCCcHHHHHHH
Confidence 344433333344566677643 3455555534 3467799999999998753
No 415
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=70.26 E-value=2.1e+02 Score=32.96 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=36.0
Q ss_pred HHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001340 768 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQ 822 (1096)
Q Consensus 768 e~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~ 822 (1096)
+..++.-..|.++..--..+.+-+..-.....++|..++++++-+.+.+-+|+.+
T Consensus 211 e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE 265 (391)
T KOG1850|consen 211 EEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKE 265 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555555666667789999999998888877776443
No 416
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=70.24 E-value=1.9 Score=41.25 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.7
Q ss_pred eeEEeeccCCCCcccccC
Q 001340 175 GTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm~ 192 (1096)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 467889999999999874
No 417
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=70.21 E-value=1.9 Score=46.23 Aligned_cols=19 Identities=42% Similarity=0.608 Sum_probs=16.6
Q ss_pred ceeEEeeccCCCCcccccC
Q 001340 174 NGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~ 192 (1096)
+|.|+-.|+||||||.+|.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3678999999999999984
No 418
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=70.17 E-value=29 Score=31.15 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 678 e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.|+..+..+......+..++.....|....-.+|..|..++.+|..+++.|+.++
T Consensus 9 ~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 9 TLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555666777778889999999999999999999997
No 419
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=70.17 E-value=1.8 Score=47.13 Aligned_cols=16 Identities=38% Similarity=0.708 Sum_probs=13.3
Q ss_pred EEeeccCCCCcccccC
Q 001340 177 VFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 177 IfaYGqTgSGKT~Tm~ 192 (1096)
+..+|.||||||+|+.
T Consensus 26 ~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTVK 41 (229)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3456999999999985
No 420
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=70.08 E-value=5.1 Score=46.53 Aligned_cols=116 Identities=20% Similarity=0.341 Sum_probs=70.7
Q ss_pred CCEEEEEEeCCCChhh-hhcCCeEEEeeCCCEEEecCCC------------CCcceecceecCCCCChhHHHhhhhHHHH
Q 001340 100 DSISVTIRFRPLSERE-FQRGDEIAWYADGDKIVRNEYN------------PATAYAFDRVFGPHANSQEVYDVAARPVV 166 (1096)
Q Consensus 100 ~~I~V~vRvRP~~~~E-~~~~~~~~~~~~~~~~~~~~~~------------~~~~f~FD~VF~~~~~q~~Vy~~~~~plV 166 (1096)
..-+.+|++.++.+++ +..|..+.+..+...|+..-.. ..-.-+|+.|=+-+..-++|.+.+--||.
T Consensus 93 ~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~ 172 (406)
T COG1222 93 TGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLK 172 (406)
T ss_pred CCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhccccc
Confidence 3456788998887655 5677777766665555422111 11223455555544555677777776766
Q ss_pred HH-Hhc--CCce--eEEeeccCCCCccccc--------------CCCC---CCCCchHHHHHHHHHHhhcC
Q 001340 167 KA-AME--GVNG--TVFAYGVTSSGKTHTM--------------HGDQ---NSPGIIPLAIKDVFSIIQDT 215 (1096)
Q Consensus 167 ~~-~l~--G~N~--tIfaYGqTgSGKT~Tm--------------~G~~---~~~GIipr~~~~LF~~i~~~ 215 (1096)
+- .|+ |+.- .|+-||+.|+|||-.- .|+. .--|==+|.+++||....+.
T Consensus 173 ~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArek 243 (406)
T COG1222 173 NPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREK 243 (406)
T ss_pred CHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhc
Confidence 42 232 4443 5899999999998642 2221 11245589999999988654
No 421
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=69.49 E-value=1.6e+02 Score=31.40 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=33.8
Q ss_pred HHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001340 769 KLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 834 (1096)
Q Consensus 769 ~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k 834 (1096)
+=.+....|.+-|..|..+++.... .++.|..++.||..+-.++++||+...
T Consensus 71 EEqqR~~~L~qvN~lLReQLEq~~~--------------~N~~L~~dl~klt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 71 EEQQRSEELAQVNALLREQLEQARK--------------ANEALQEDLQKLTQDWERLRDELEQKE 122 (182)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555433 555666688999888888888887655
No 422
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=69.44 E-value=1.3e+02 Score=35.51 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 640 VQIQNLEREIQEKRRQMRILEQRII 664 (1096)
Q Consensus 640 ~Q~qkL~~elrdKeeei~~L~qki~ 664 (1096)
.|..+|..++..--+.|..-++.|-
T Consensus 241 ~~L~kl~~~i~~~lekI~sREk~iN 265 (359)
T PF10498_consen 241 SQLDKLQQDISKTLEKIESREKYIN 265 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555553
No 423
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=69.39 E-value=2.8 Score=44.90 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=20.8
Q ss_pred HHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.|..++...+..++..|+.||||||+|.
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 4556665555566678999999999874
No 424
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=69.11 E-value=1.6e+02 Score=34.45 Aligned_cols=88 Identities=14% Similarity=0.157 Sum_probs=55.6
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHHhhhccC-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCCcch
Q 001340 600 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVN-DPDGSKVQIQNLEREIQEKRRQMRILEQRIIENG---EASMANAS 675 (1096)
Q Consensus 600 ~d~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~-~~~~~~~Q~qkL~~elrdKeeei~~L~qki~~s~---~~s~~~~~ 675 (1096)
.+.++-+.+|++.+..++..-...|..|-....- +|+ .+...+...+.+.+.++..++.++...+ ...+| .
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~---~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P--~ 243 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPK---AQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNP--Q 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--c
Confidence 4667889999999999999999999988877654 232 2333334444444444444444443332 22233 5
Q ss_pred hHHHHHHHHHHHHhhhh
Q 001340 676 MVDMQQTVTRLMSQCNE 692 (1096)
Q Consensus 676 ~~e~~~~v~~L~~~l~e 692 (1096)
+..+..++..|..++++
T Consensus 244 v~~l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 244 VPSLQARIKSLRKQIDE 260 (362)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 55677788888777765
No 425
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=68.96 E-value=4.6 Score=51.17 Aligned_cols=88 Identities=23% Similarity=0.369 Sum_probs=55.1
Q ss_pred eecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccCCCC---CCCCchH----HHHHHHHHHhhc
Q 001340 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQ---NSPGIIP----LAIKDVFSIIQD 214 (1096)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~---~~~GIip----r~~~~LF~~i~~ 214 (1096)
|....-|.|.-+|..-|.. +++.+-+|...- ..+|.|||||||||.+-- ..|-||- .....|++.+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 4444557888888887764 455555664333 378999999999986521 1222221 234455555543
Q ss_pred C-CCCeeEEEEeeeeeeccee
Q 001340 215 T-PGREFLLRVSYLEIYNEVI 234 (1096)
Q Consensus 215 ~-~~~~~~v~vS~lEIYnE~i 234 (1096)
- ++..+...|||+..|.-..
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred hCCCCeEEEEeeecccCCccc
Confidence 2 4555788899999997654
No 426
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=68.82 E-value=2.8 Score=49.26 Aligned_cols=20 Identities=40% Similarity=0.611 Sum_probs=17.9
Q ss_pred CceeEEeeccCCCCcccccC
Q 001340 173 VNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 173 ~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
-++.|+..|+||||||.||.
T Consensus 133 ~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 46899999999999999984
No 427
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=68.77 E-value=3.7 Score=45.49 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=18.4
Q ss_pred HHhcCCceeEEeeccCCCCccccc
Q 001340 168 AAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 168 ~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
..+....+.++-+|++|+|||+.+
T Consensus 37 ~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 37 YGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHH
Confidence 334444667888999999999876
No 428
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=68.62 E-value=2.5e+02 Score=34.90 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=15.3
Q ss_pred HHHHHHHHHH----HhHHHHHhhHHHHHHHHHHHHH
Q 001340 904 ALEAALAEKE----FLEDEYRKKVEESKRREEALEN 935 (1096)
Q Consensus 904 aLE~el~~k~----~~eeEl~~~leE~kkk~~~Le~ 935 (1096)
+|+.-+...+ ++|+-+.+-.+|..+.......
T Consensus 263 ~l~~li~dgrihp~riee~~~~~~~~~~~~i~~~g~ 298 (514)
T TIGR03319 263 ALEKLIQDGRIHPARIEEMVEKATKEVDNAIREEGE 298 (514)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 4555555445555554444433
No 429
>PRK12704 phosphodiesterase; Provisional
Probab=68.48 E-value=2.5e+02 Score=34.89 Aligned_cols=15 Identities=13% Similarity=0.069 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 001340 797 YAKELASAAAVELKN 811 (1096)
Q Consensus 797 ~~k~la~aa~~qlk~ 811 (1096)
..+.|....+.+++.
T Consensus 155 a~~~l~~~~~~~~~~ 169 (520)
T PRK12704 155 AKEILLEKVEEEARH 169 (520)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445555544443
No 430
>PF12846 AAA_10: AAA-like domain
Probab=68.31 E-value=2.1 Score=47.82 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=16.3
Q ss_pred ceeEEeeccCCCCcccccC
Q 001340 174 NGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~ 192 (1096)
|.-++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 5567889999999999874
No 431
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=68.11 E-value=40 Score=29.51 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=29.5
Q ss_pred HHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 701 SADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 701 ~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.+++-.++.+|++++.++.+|..+|..|+.++
T Consensus 24 k~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 24 KSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999988
No 432
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=67.86 E-value=3.3 Score=43.68 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=15.7
Q ss_pred eeEEeeccCCCCcccccCC
Q 001340 175 GTVFAYGVTSSGKTHTMHG 193 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm~G 193 (1096)
-.|+-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 4589999999999998754
No 433
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=67.83 E-value=1.7 Score=50.50 Aligned_cols=9 Identities=56% Similarity=0.936 Sum_probs=5.0
Q ss_pred EEEecCCCC
Q 001340 321 NLIDLAGSE 329 (1096)
Q Consensus 321 ~lVDLAGSE 329 (1096)
+||||+|.-
T Consensus 240 tLIDLCGaT 248 (416)
T PF04710_consen 240 TLIDLCGAT 248 (416)
T ss_dssp -EEE-SSSE
T ss_pred cChhhceee
Confidence 578888754
No 434
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=67.59 E-value=3.3 Score=46.56 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=21.3
Q ss_pred HHHHhcCCceeEEeeccCCCCcccccC
Q 001340 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
+..++..-.+.|+-.|+||||||.||.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 455565556778889999999999984
No 435
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=67.13 E-value=2.2e+02 Score=31.97 Aligned_cols=80 Identities=16% Similarity=0.253 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHH
Q 001340 641 QIQNLEREIQEKRRQMRILEQRIIENGE--ASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSEN 718 (1096)
Q Consensus 641 Q~qkL~~elrdKeeei~~L~qki~~s~~--~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~ 718 (1096)
..+.|...+......|..+..++..... ...+..+...+..++.+++.++..+. +..+...|+.|.
T Consensus 88 ~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~------------f~~~~~~Ae~El 155 (264)
T PF06008_consen 88 RAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRD------------FTPQRQNAEDEL 155 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhcc------------chhHHHHHHHHH
Confidence 3445777777777777777777755544 12333355555566666666666544 445555556666
Q ss_pred HHHHHHHHHHHHHH
Q 001340 719 KKLQEKVNLLEQQL 732 (1096)
Q Consensus 719 ~~L~~~l~~lk~~l 732 (1096)
.+++.=+.+.+..+
T Consensus 156 ~~A~~LL~~v~~~~ 169 (264)
T PF06008_consen 156 KEAEDLLSRVQKWF 169 (264)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555544444
No 436
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=67.07 E-value=4 Score=45.52 Aligned_cols=31 Identities=35% Similarity=0.394 Sum_probs=25.5
Q ss_pred hHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 162 ARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 162 ~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
..++++.+.--.-|.|+..|.|||||+.||-
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 3566777777777899999999999999984
No 437
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=66.76 E-value=1.9e+02 Score=31.16 Aligned_cols=31 Identities=29% Similarity=0.257 Sum_probs=19.7
Q ss_pred HhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 702 ADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 702 ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
++++.|..+++..+.+....+.++.-+.++|
T Consensus 4 ~~va~lnrri~~leeele~aqErl~~a~~KL 34 (205)
T KOG1003|consen 4 ADVAALNRRIQLLEEELDRAQERLATALQKL 34 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666
No 438
>PRK02119 hypothetical protein; Provisional
Probab=66.56 E-value=19 Score=32.56 Aligned_cols=53 Identities=13% Similarity=0.285 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhh
Q 001340 717 ENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSG 783 (1096)
Q Consensus 717 e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~ 783 (1096)
++..++..|.+|+.++ +-.+..+.+|+..+..|-.+|+.+++....|.+....
T Consensus 3 ~~~~~e~Ri~~LE~rl--------------a~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 3 IQQNLENRIAELEMKI--------------AFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred chHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455777778888777 4456778899999999999999999888777664433
No 439
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=66.53 E-value=2.3 Score=35.29 Aligned_cols=38 Identities=29% Similarity=0.695 Sum_probs=15.9
Q ss_pred cccccccc--cceEEe--CCCCcccchhhhhcC-----CCCCCCcccc
Q 001340 1050 CKVCFESP--TAAILL--PCRHFCLCKSCSLAC-----SECPICRTKI 1088 (1096)
Q Consensus 1050 C~IC~~~~--~~~vl~--pCgH~~~C~~C~~~~-----~~CPiCr~~i 1088 (1096)
|++|.+.. ++.-|. +||+. +|..|...+ ..||.||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 55665532 333344 57887 899995544 4599999874
No 440
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=66.15 E-value=41 Score=35.08 Aligned_cols=31 Identities=26% Similarity=0.301 Sum_probs=17.4
Q ss_pred HhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 702 ADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 702 ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.+...|+++|.+...++..|+.++..|...+
T Consensus 79 ~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 79 AEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444555555555566666666655555554
No 441
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=65.76 E-value=0.74 Score=42.10 Aligned_cols=38 Identities=26% Similarity=0.833 Sum_probs=33.4
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccce
Q 001340 1048 HMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDR 1091 (1096)
Q Consensus 1048 ~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~~~CPiCr~~i~~~ 1091 (1096)
..|.|| +..|-.|--|+ |..|+..-..|.+|.+.|...
T Consensus 55 ~kC~iC----k~~vHQ~GshY--C~tCAY~KgiCAMCGKki~nT 92 (100)
T KOG3476|consen 55 AKCRIC----KQLVHQPGSHY--CQTCAYKKGICAMCGKKILNT 92 (100)
T ss_pred chhHHH----HHHhcCCcchh--HhHhhhhhhHHHHhhhHhhcc
Confidence 489999 88888888896 999999999999999988653
No 442
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=65.36 E-value=2.6e+02 Score=32.27 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=14.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 888 PDDLKLELQARKQREAALEAALAEKE 913 (1096)
Q Consensus 888 ~~~~K~e~~a~~erq~aLE~el~~k~ 913 (1096)
+..++.++.-.++.+.+.+++-.++.
T Consensus 231 I~~Lr~EV~RLR~qL~~sq~e~~~k~ 256 (310)
T PF09755_consen 231 IRSLRQEVSRLRQQLAASQQEHSEKM 256 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666655555555555554444
No 443
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=65.24 E-value=2e+02 Score=34.33 Aligned_cols=36 Identities=31% Similarity=0.366 Sum_probs=29.6
Q ss_pred HHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 001340 699 IKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLAC 734 (1096)
Q Consensus 699 ~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~ 734 (1096)
+..|+-+++..-|+.+|.++..|+++...+.+..++
T Consensus 38 ~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 38 ILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888899999999999999888888744
No 444
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.08 E-value=2.3e+02 Score=33.07 Aligned_cols=45 Identities=24% Similarity=0.270 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001340 782 SGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKL 826 (1096)
Q Consensus 782 ~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL 826 (1096)
.++-.++.+|.++..--.-..++|++--|-|-++++|++.....|
T Consensus 155 ekia~emr~lede~~r~~mrtkaaavatkpledelekieekkeel 199 (637)
T KOG4421|consen 155 EKIADEMRDLEDETERIAMRTKAAAVATKPLEDELEKIEEKKEEL 199 (637)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchhHHHHHHHHHHHH
Confidence 344555666666555555566777777777777777776555544
No 445
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=64.60 E-value=2.2e+02 Score=31.11 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=35.6
Q ss_pred HHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001340 760 VQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHS 839 (1096)
Q Consensus 760 ~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~ 839 (1096)
+...+..-..+++++..+......+..+-..+.. -+.-+||..|..+.......+..|..+..++...+..++..+..
T Consensus 47 lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~--~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~ 124 (219)
T TIGR02977 47 SARTIADKKELERRVSRLEAQVADWQEKAELALS--KGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAK 124 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444333333 12334455444444444444444444444444444444444433
Q ss_pred HHHHH
Q 001340 840 RGAAM 844 (1096)
Q Consensus 840 ~e~qi 844 (1096)
.+.++
T Consensus 125 L~~ki 129 (219)
T TIGR02977 125 LQAKL 129 (219)
T ss_pred HHHHH
Confidence 33333
No 446
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=64.55 E-value=1.2e+02 Score=31.11 Aligned_cols=97 Identities=21% Similarity=0.207 Sum_probs=57.6
Q ss_pred CchhhHHHHHHHHHHHHHHHhhHHHHHHHhhhccCCCCC---------------------------chHHHHHHHHHHHH
Q 001340 599 TSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDG---------------------------SKVQIQNLEREIQE 651 (1096)
Q Consensus 599 ~~d~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~~---------------------------~~~Q~qkL~~elrd 651 (1096)
|+|=+=.|++.+..|..-|......|.|-..-+.-+|.+ .....+.|.+.|=.
T Consensus 1 M~DrlTQLQd~ldqL~~~f~~si~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elA~dIi~ 80 (144)
T PF11221_consen 1 MADRLTQLQDCLDQLAEQFCNSIGYLQRDAPPSPLSPNDPSISDPKPQAPPQQQQQAEPAPDPPEEFEENIKELATDIIR 80 (144)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGG-----------------------------HHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCcccccCccccchhhhhhhhcccCCChhhHHHHHHHHHHHHHH
Confidence 456666788888888888888888888866665555444 22234468888888
Q ss_pred HHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHH
Q 001340 652 KRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKS 701 (1096)
Q Consensus 652 Keeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ 701 (1096)
|..+|+.|-..++.... +..+-...|.+|..++++..-+|+.+-
T Consensus 81 kakqIe~LIdsLPg~~~------see~Q~~~i~~L~~E~~~~~~el~~~v 124 (144)
T PF11221_consen 81 KAKQIEYLIDSLPGIEV------SEEEQLKRIKELEEENEEAEEELQEAV 124 (144)
T ss_dssp HHHHHHHHHHHSTTSSS-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887763322 121333455656555554444444333
No 447
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.52 E-value=98 Score=27.69 Aligned_cols=39 Identities=28% Similarity=0.296 Sum_probs=19.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHH
Q 001340 755 ELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 793 (1096)
Q Consensus 755 el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~ 793 (1096)
.+.+++++-+.-|.-|.-++..|.|.|..|..+.+.+..
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~ 46 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 46 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 344444444444444455555555555555555444433
No 448
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=64.32 E-value=8.2 Score=42.73 Aligned_cols=74 Identities=24% Similarity=0.468 Sum_probs=46.7
Q ss_pred eecceecCCCCChhHHHhhhhHHHHHHHh---cCCc--eeEEeeccCCCCcccccC--------------CCC---CCCC
Q 001340 142 YAFDRVFGPHANSQEVYDVAARPVVKAAM---EGVN--GTVFAYGVTSSGKTHTMH--------------GDQ---NSPG 199 (1096)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~~~l---~G~N--~tIfaYGqTgSGKT~Tm~--------------G~~---~~~G 199 (1096)
..|-.|=+-+..-++|-+.+--|+...-+ =|+. -.|+.||+.|+|||...- |+. .--|
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylg 231 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 231 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhc
Confidence 44455555555556666666666655443 1333 258999999999985431 211 1236
Q ss_pred chHHHHHHHHHHhhcC
Q 001340 200 IIPLAIKDVFSIIQDT 215 (1096)
Q Consensus 200 Iipr~~~~LF~~i~~~ 215 (1096)
=-||.++|+|....+.
T Consensus 232 egprmvrdvfrlaken 247 (408)
T KOG0727|consen 232 EGPRMVRDVFRLAKEN 247 (408)
T ss_pred cCcHHHHHHHHHHhcc
Confidence 6799999999988654
No 449
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=64.16 E-value=51 Score=30.05 Aligned_cols=67 Identities=25% Similarity=0.273 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001340 762 SQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 841 (1096)
Q Consensus 762 ~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e 841 (1096)
.|...|++|+.|+-.|--..--|...+++... ...+++.++...|..++..|..|+..++..+.+.+
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~~~-------------~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKLGP-------------ESIEELLKENIELKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc-------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677766666665555555555554433 44555666666666666666666666665554443
No 450
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=64.12 E-value=1.7 Score=48.59 Aligned_cols=25 Identities=24% Similarity=0.704 Sum_probs=17.7
Q ss_pred ccccccccc---cceEEeCCCCcccchhh
Q 001340 1049 MCKVCFESP---TAAILLPCRHFCLCKSC 1074 (1096)
Q Consensus 1049 ~C~IC~~~~---~~~vl~pCgH~~~C~~C 1074 (1096)
.|+||+--. -..+..+|.|+ |=..|
T Consensus 117 qCvICLygfa~~~~ft~T~C~Hy-~H~~C 144 (368)
T KOG4445|consen 117 QCVICLYGFASSPAFTVTACDHY-MHFAC 144 (368)
T ss_pred ceEEEEEeecCCCceeeehhHHH-HHHHH
Confidence 677776643 33777899999 55566
No 451
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=63.98 E-value=1.1e+02 Score=34.51 Aligned_cols=26 Identities=12% Similarity=0.318 Sum_probs=17.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 707 LQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 707 lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
-+++|++-+.||.+|+.+|.+.+++-
T Consensus 80 s~~~l~dRetEI~eLksQL~RMrEDW 105 (305)
T PF15290_consen 80 SENRLHDRETEIDELKSQLARMREDW 105 (305)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777766664
No 452
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=63.65 E-value=2.3e+02 Score=30.93 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 602 QMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRII 664 (1096)
Q Consensus 602 ~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~Q~qkL~~elrdKeeei~~L~qki~ 664 (1096)
.++.|.+|...-.+++-.....|- .....|+..|..++-+++..+..+.+.+.
T Consensus 19 ~i~~L~~q~~~~~~~i~~~r~~l~----------s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq 71 (206)
T PF14988_consen 19 KIEKLWKQYIQQLEEIQRERQELV----------SRYAKQTSELQDQLLQKEKEQAKLQQELQ 71 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666655554443 11224566677777777777777777664
No 453
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.49 E-value=2.7 Score=46.34 Aligned_cols=44 Identities=25% Similarity=0.638 Sum_probs=32.1
Q ss_pred ccccccccccccc----------ceEEeCCCCcccchhhhhcC------CCCCCCcccccc
Q 001340 1046 NSHMCKVCFESPT----------AAILLPCRHFCLCKSCSLAC------SECPICRTKISD 1090 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~----------~~vl~pCgH~~~C~~C~~~~------~~CPiCr~~i~~ 1090 (1096)
+...|.||-.+-- ++.-+-|+|. |=+.|...- +.||.|...|+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhhH
Confidence 4558999966433 2335789998 999995543 569999998764
No 454
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=63.38 E-value=3.6 Score=47.10 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=20.8
Q ss_pred HHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 164 plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.++..++.+ .+.|+..|.||||||.+|.
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 445555554 4678889999999999873
No 455
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=62.89 E-value=4.6e+02 Score=34.29 Aligned_cols=87 Identities=17% Similarity=0.244 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhh-----hHHHHHHHH--hHHHHHHHHH
Q 001340 640 VQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEK-----AFELEIKSA--DNRILQEQLQ 712 (1096)
Q Consensus 640 ~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~-----~~ele~k~a--e~~~lqeqL~ 712 (1096)
...+.+-..+.-++...+.|++|....-. .+.+.++++.+++..+-=. .+.+++.++ +...+.+--.
T Consensus 557 q~~~~~r~~ld~leaa~e~lE~r~~~~e~------~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~~ 630 (984)
T COG4717 557 QHWQQLRKALDQLEAAYEALEGRFAAAEA------AMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKA 630 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777778888888888888643221 3447788888877665322 233444332 4444444434
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 001340 713 NKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 713 ~a~~e~~~L~~~l~~lk~~l 732 (1096)
+.+.+..-|.++.+.....+
T Consensus 631 EL~~q~~~L~ee~~af~~~v 650 (984)
T COG4717 631 ELTHQVARLREEQAAFEERV 650 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 456
>PRK11546 zraP zinc resistance protein; Provisional
Probab=62.81 E-value=49 Score=33.90 Aligned_cols=73 Identities=14% Similarity=0.208 Sum_probs=49.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHhhHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhH
Q 001340 598 MTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMV 677 (1096)
Q Consensus 598 ~~~d~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~ 677 (1096)
.+.+|. .+++.+.++|...+..|+ .++..|+.++..|+.. ..|+..-+.
T Consensus 44 LT~EQQ----a~~q~I~~~f~~~t~~LR---------------------qqL~aKr~ELnALl~~------~~pD~~kI~ 92 (143)
T PRK11546 44 LTTEQQ----AAWQKIHNDFYAQTSALR---------------------QQLVSKRYEYNALLTA------NPPDSSKIN 92 (143)
T ss_pred CCHHHH----HHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcC------CCCCHHHHH
Confidence 455653 345566677766555554 8889999999888652 233333356
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHH
Q 001340 678 DMQQTVTRLMSQCNEKAFELEIKS 701 (1096)
Q Consensus 678 e~~~~v~~L~~~l~e~~~ele~k~ 701 (1096)
.+.++|..|..+|.+.-|++++..
T Consensus 93 aL~kEI~~Lr~kL~e~r~~~~~~~ 116 (143)
T PRK11546 93 AVAKEMENLRQSLDELRVKRDIAM 116 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888877776553
No 457
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=62.70 E-value=3.2e+02 Score=32.33 Aligned_cols=48 Identities=27% Similarity=0.263 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001340 764 ETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNA 824 (1096)
Q Consensus 764 ~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~ 824 (1096)
..||-.||||...+.|- =+|.+-|+|.-...-++.|-.+|.||+.+..
T Consensus 323 QnEi~nLKqElasmeer-------------vaYQsyERaRdIqEalEscqtrisKlEl~qq 370 (455)
T KOG3850|consen 323 QNEIANLKQELASMEER-------------VAYQSYERARDIQEALESCQTRISKLELQQQ 370 (455)
T ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777776665543 3577778888888888899999999976655
No 458
>PHA00729 NTP-binding motif containing protein
Probab=62.70 E-value=5.6 Score=43.73 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=24.3
Q ss_pred hhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 161 AARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 161 ~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
+++.++..+..|--..|+.+|.+|+||||...
T Consensus 4 ~~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 4 LAKKIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 35566776665444689999999999999764
No 459
>PLN02939 transferase, transferring glycosyl groups
Probab=62.68 E-value=2.3e+02 Score=37.70 Aligned_cols=24 Identities=42% Similarity=0.625 Sum_probs=20.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 709 EQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 709 eqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
+.|+..-.|-+.||.+|+-|+-.|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~ 179 (977)
T PLN02939 156 EDLEKILTEKEALQGKINILEMRL 179 (977)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHh
Confidence 566777788888999999998888
No 460
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=62.63 E-value=2.9e+02 Score=31.90 Aligned_cols=23 Identities=30% Similarity=0.241 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhHHhhhhHHHHHH
Q 001340 767 NEKLKLEHVQLSEENSGLHVQNQ 789 (1096)
Q Consensus 767 ie~lk~e~~~L~Ee~~~L~~e~~ 789 (1096)
+.+|--++..|.++..+|+.+++
T Consensus 221 LkKl~~eke~L~~qv~klk~qLe 243 (302)
T PF09738_consen 221 LKKLADEKEELLEQVRKLKLQLE 243 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666653
No 461
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=62.60 E-value=2.5e+02 Score=31.17 Aligned_cols=56 Identities=21% Similarity=0.212 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 603 MDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRII 664 (1096)
Q Consensus 603 ~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~Q~qkL~~elrdKeeei~~L~qki~ 664 (1096)
++.|..|.++|..-.++--.++.-|...-+. ......=.++-+..+.|..+.++.+
T Consensus 45 ~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~------~~Ls~als~laev~~~i~~~~~~qa 100 (234)
T cd07665 45 VETLVNHRKELALNTALFAKSLAMLGSSEDN------TALSRALSQLAEVEEKIEQLHQEQA 100 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777766555555555544443322 3344455567777777777777764
No 462
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=62.30 E-value=4.8 Score=47.34 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=27.7
Q ss_pred CCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCccccc
Q 001340 151 HANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 151 ~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
+..|..+|+.+...+.. .....+|..|+.|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~----~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN----EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc----cCCcEEEEEcCCCCChhHHH
Confidence 35688999877654433 34456799999999999986
No 463
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=62.23 E-value=4.1e+02 Score=33.40 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 676 MVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 676 ~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
--++|..+.+|...-+-..+++.|.+-...+--|.+.+.+.-+++-+.+|...++.|
T Consensus 106 ~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmL 162 (861)
T KOG1899|consen 106 YPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEML 162 (861)
T ss_pred chHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHH
Confidence 346777888876655555555555555555555555555555555555555555554
No 464
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=62.07 E-value=30 Score=43.67 Aligned_cols=28 Identities=21% Similarity=0.086 Sum_probs=12.5
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHhhhHHH
Q 001340 691 NEKAFELEIKSADNRILQEQLQNKCSEN 718 (1096)
Q Consensus 691 ~e~~~ele~k~ae~~~lqeqL~~a~~e~ 718 (1096)
++|....+....=-+.+++|.+.....+
T Consensus 925 ~e~dkF~ekM~~F~e~a~eq~~~ls~M~ 952 (1102)
T KOG1924|consen 925 NEHDKFVEKMTSFHEKAREQYSKLSSMH 952 (1102)
T ss_pred cchhhHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3444444444443334455544444433
No 465
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=61.69 E-value=4.7 Score=39.72 Aligned_cols=66 Identities=20% Similarity=0.516 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccccc-----cceEEeCCCCcccchhhhhcCC-----CCCCCcc
Q 001340 1020 PLVARLKARMQEMKEKEQKYQGNGDPNSHMCKVCFESP-----TAAILLPCRHFCLCKSCSLACS-----ECPICRT 1086 (1096)
Q Consensus 1020 ~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~C~IC~~~~-----~~~vl~pCgH~~~C~~C~~~~~-----~CPiCr~ 1086 (1096)
..+.+|+.+|+...............+.+.|.+|.... ...+-.-|+|. +|..|..... .|.+|.+
T Consensus 27 ~Ri~kLk~~L~~e~~r~~~~~~~~~~~~~~C~~C~~~fg~l~~~~~~C~~C~~~-VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 27 ERIRKLKQELQKEKMRREALGNSQKYGERHCARCGKPFGFLFNRGRVCVDCKHR-VCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCSTTHCCSB-TTTS-BCSCTSTTCEEETTTTEE-EETTSEEETSSSCCEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccccccCCcchhhhCCcccccCCCCCcCCcCCcc-ccCccCCcCCCCCCEEChhhHH
Confidence 35556666663322221111111122556899997753 34555567776 6777754431 2777765
No 466
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=61.50 E-value=3.9 Score=51.00 Aligned_cols=41 Identities=29% Similarity=0.764 Sum_probs=33.6
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcC-------CCCCCCcccccc
Q 001340 1049 MCKVCFESPTAAILLPCRHFCLCKSCSLAC-------SECPICRTKISD 1090 (1096)
Q Consensus 1049 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-------~~CPiCr~~i~~ 1090 (1096)
+|.||......-+.+-|.|. ||..|...+ ..||+|+..+..
T Consensus 23 Ec~ic~~~~~~p~~~kc~~~-~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 23 ECPICLEHVKEPSLLKCDHI-FLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred cCCceeEEeeccchhhhhHH-HHhhhhhceeeccCccccchhhhhhhhh
Confidence 89999887777788889999 999996554 569999976654
No 467
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=61.34 E-value=21 Score=31.83 Aligned_cols=51 Identities=25% Similarity=0.385 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHH
Q 001340 721 LQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLH 785 (1096)
Q Consensus 721 L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~ 785 (1096)
++..|..|+.++ +-.+..+.+|+..+..|-.+|++|++....|.+....+.
T Consensus 2 le~Ri~~LE~~l--------------a~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKL--------------AFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566666666 334566778888889999999999998888877766654
No 468
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=61.13 E-value=3.9 Score=43.56 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=20.4
Q ss_pred HHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
+...+..|.+..++-||+.|+|||+.|.
T Consensus 11 l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 11 LKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 4444445678899999999999998763
No 469
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=60.79 E-value=3.4 Score=44.39 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=14.9
Q ss_pred eEEeeccCCCCcccccC
Q 001340 176 TVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 176 tIfaYGqTgSGKT~Tm~ 192 (1096)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 47789999999999974
No 470
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=60.65 E-value=3.8e+02 Score=32.51 Aligned_cols=87 Identities=17% Similarity=0.235 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhh--HHHHHHHHhHHHHHHHHHhhhHHHHHHHH
Q 001340 646 EREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKA--FELEIKSADNRILQEQLQNKCSENKKLQE 723 (1096)
Q Consensus 646 ~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~--~ele~k~ae~~~lqeqL~~a~~e~~~L~~ 723 (1096)
..++.+.+.++.+|.|=.......... ++..+-.++..++..--+-. ..--....-+..|.+.-........+||-
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~~--~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD 227 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVKE--SISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQD 227 (424)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777777776644332222222 22233333333222100000 11111133555566666666777777888
Q ss_pred HHHHHHHHHHh
Q 001340 724 KVNLLEQQLAC 734 (1096)
Q Consensus 724 ~l~~lk~~l~~ 734 (1096)
-|..|+.++++
T Consensus 228 ~VE~LRkDV~~ 238 (424)
T PF03915_consen 228 LVEDLRKDVVQ 238 (424)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877744
No 471
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=60.27 E-value=6.1 Score=45.12 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=16.8
Q ss_pred cCC-ceeEEeeccCCCCcccccC
Q 001340 171 EGV-NGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 171 ~G~-N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.|- ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 453 3566679999999999874
No 472
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=60.25 E-value=3.8 Score=51.93 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=22.4
Q ss_pred CcCCCCCccchhhccCCCCCccceeEEeeCCC
Q 001340 367 HVPYRDSKLTRLLQSSLSGHGHVSLICTVTPA 398 (1096)
Q Consensus 367 hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~ 398 (1096)
.-+|+|-.|-.+|-+..+|..-|++=.+.+.+
T Consensus 892 ~~f~yd~vl~e~l~~~IdgkmpvlfkknLsSa 923 (1525)
T COG5219 892 TNFFYDLVLNECLYKNIDGKMPVLFKKNLSSA 923 (1525)
T ss_pred ehhHHHHHHHHHHHhccCcccchhhhhhhhhh
Confidence 44677777777888888887777766665543
No 473
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=60.19 E-value=3.4 Score=33.94 Aligned_cols=43 Identities=28% Similarity=0.749 Sum_probs=24.4
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccceee
Q 001340 1049 MCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISDRLF 1093 (1096)
Q Consensus 1049 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCr~~i~~~i~ 1093 (1096)
-|.-|+-..++.| -|.--.+|-.|-..| ..||+|..+....|+
T Consensus 4 nCKsCWf~~k~Li--~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtkir 50 (50)
T PF03854_consen 4 NCKSCWFANKGLI--KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKIR 50 (50)
T ss_dssp ---SS-S--SSEE--E-SS-EEEHHHHHHT-SSSSEETTTTEE----S-
T ss_pred cChhhhhcCCCee--eecchhHHHHHHHHHhccccCCCcccCcCccccC
Confidence 5899988888877 576555999997777 449999998877653
No 474
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.89 E-value=8.7 Score=38.21 Aligned_cols=24 Identities=25% Similarity=0.688 Sum_probs=15.0
Q ss_pred CCCcccccccccccccceEEeCCCCcc
Q 001340 1043 GDPNSHMCKVCFESPTAAILLPCRHFC 1069 (1096)
Q Consensus 1043 ~~~~~~~C~IC~~~~~~~vl~pCgH~~ 1069 (1096)
+..+...|-||+... .---|||.|
T Consensus 61 Gv~ddatC~IC~KTK---FADG~GH~C 84 (169)
T KOG3799|consen 61 GVGDDATCGICHKTK---FADGCGHNC 84 (169)
T ss_pred ccCcCcchhhhhhcc---cccccCccc
Confidence 344566899996432 123699974
No 475
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=59.84 E-value=3.7 Score=39.76 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=13.2
Q ss_pred EEeeccCCCCccccc
Q 001340 177 VFAYGVTSSGKTHTM 191 (1096)
Q Consensus 177 IfaYGqTgSGKT~Tm 191 (1096)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 678999999999875
No 476
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=59.77 E-value=65 Score=28.62 Aligned_cols=54 Identities=22% Similarity=0.168 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 001340 767 NEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLS 820 (1096)
Q Consensus 767 ie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~ 820 (1096)
++.|=+....|.+||..|..+...+..|-..-.+.-..|...++.++.++..|+
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 345555555566666666666666666655566666666667777777666554
No 477
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=59.66 E-value=4.8 Score=46.57 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=20.0
Q ss_pred HHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 164 plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.++..++.+ ...|+..|.||||||++|.
T Consensus 139 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 139 EAIIAAVRA-HRNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 355556655 3566777999999997763
No 478
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=59.62 E-value=48 Score=29.43 Aligned_cols=50 Identities=26% Similarity=0.236 Sum_probs=40.9
Q ss_pred HHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 001340 685 RLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLAC 734 (1096)
Q Consensus 685 ~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~ 734 (1096)
.|...++.....++....+|..|.+|+.....+...|.+++...++++-.
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEa 53 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556667778899999999999999999999999999999833
No 479
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=59.53 E-value=6.3 Score=45.20 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=26.3
Q ss_pred eecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
-.||.+++ ++++... +...+-.|....++-||++|+|||+++.
T Consensus 12 ~~~~~~~g----~~~~~~~----L~~~~~~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 12 ALLEDILG----QDEVVER----LSRAVDSPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred CcHHHhcC----CHHHHHH----HHHHHhCCCCceEEEECCCCCCHHHHHH
Confidence 35777765 3333332 2222223443458889999999999874
No 480
>PRK00106 hypothetical protein; Provisional
Probab=59.50 E-value=4.4e+02 Score=32.93 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=15.2
Q ss_pred HHHHHHHHHH----HhHHHHHhhHHHHHHHHHHHHH
Q 001340 904 ALEAALAEKE----FLEDEYRKKVEESKRREEALEN 935 (1096)
Q Consensus 904 aLE~el~~k~----~~eeEl~~~leE~kkk~~~Le~ 935 (1096)
+|+.-+...+ ++|+-+.+-.+|..+.......
T Consensus 284 ~le~Li~dgrIhp~rIEe~v~k~~~e~~~~i~~~Ge 319 (535)
T PRK00106 284 TLESLIKDGRIHPARIEELVEKNRLEMDNRIREYGE 319 (535)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554444443 4555544444455444444443
No 481
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=59.49 E-value=9.8 Score=36.08 Aligned_cols=31 Identities=29% Similarity=0.653 Sum_probs=23.5
Q ss_pred Ccccccccccccc--cceEEeCCCCcccchhhhh
Q 001340 1045 PNSHMCKVCFESP--TAAILLPCRHFCLCKSCSL 1076 (1096)
Q Consensus 1045 ~~~~~C~IC~~~~--~~~vl~pCgH~~~C~~C~~ 1076 (1096)
.....|.+|...- ...++.||||. +...|..
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence 3556899998844 45667899998 7888864
No 482
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=59.49 E-value=95 Score=28.57 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 808 ELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 844 (1096)
Q Consensus 808 qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qi 844 (1096)
+...|..+++.+......|..+....|.....|...+
T Consensus 33 kn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 33 KNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444666666666666666666777777787544
No 483
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=59.30 E-value=2.8e+02 Score=30.63 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 001340 784 LHVQNQKLAEEASYAKELASA----AAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMK 859 (1096)
Q Consensus 784 L~~e~~kl~~e~~~~k~la~a----a~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qiq~v~~dar~~lq~l~ 859 (1096)
+......+.++......+..+ +..+|..+...+.++.+...++..++...+.....|+.+-+-...-.
T Consensus 11 ~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g-------- 82 (225)
T COG1842 11 VKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAG-------- 82 (225)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
Q ss_pred hhccccccCccccccCcccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHh
Q 001340 860 AGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLAN 939 (1096)
Q Consensus 860 ~~~~e~l~~~~~~~~~~~~~~~~~~w~~~~~~K~e~~a~~erq~aLE~el~~k~~~eeEl~~~leE~kkk~~~Le~el~~ 939 (1096)
.|.|+. +.+++...||..+...+..-.++...++.++.....|+..+
T Consensus 83 ---~E~LAr----------------------------~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki-- 129 (225)
T COG1842 83 ---NEDLAR----------------------------EALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKI-- 129 (225)
T ss_pred ---CHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred hHHHHHHhhhhh
Q 001340 940 MWVLVAKLKKEV 951 (1096)
Q Consensus 940 ~~~l~~~Lkke~ 951 (1096)
..++...
T Consensus 130 -----~e~~~~~ 136 (225)
T COG1842 130 -----AELRAKK 136 (225)
T ss_pred -----HHHHHHH
No 484
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=58.96 E-value=5.1 Score=42.64 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=16.5
Q ss_pred HHHHhcCCceeEEeeccCCCCcccccC
Q 001340 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
|..++..-. ..+..|+.|||||+|+.
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHHH
Confidence 444443333 45668999999999875
No 485
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=58.95 E-value=2.7e+02 Score=30.36 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001340 804 AAAVELKNLAGEVTKLSLQNAKLEKELLAARESMH 838 (1096)
Q Consensus 804 aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~ 838 (1096)
.+..++..|-..+.|.+..+.-|...|+.+..+..
T Consensus 158 ~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ 192 (207)
T PF05010_consen 158 KHQAELLALQASLKKEEMKVQSLEESLEQKTKENE 192 (207)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666666666655544443
No 486
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.68 E-value=2.7e+02 Score=32.43 Aligned_cols=123 Identities=19% Similarity=0.069 Sum_probs=72.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH---HhhcC--C-CCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhH
Q 001340 705 RILQEQLQNKCSENKKLQEKVNLLEQQL---ACQNG--D-KSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLS 778 (1096)
Q Consensus 705 ~~lqeqL~~a~~e~~~L~~~l~~lk~~l---~~~~e--~-~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~ 778 (1096)
..|...|.-.++++.+||++-|+|=-.. ..++| . ......-..+++...+- -.+-.+++-|.+..-.
T Consensus 490 dhlkselhllesrneelqkerdrlfvdnslvkrkleiamadaqldapapdmdqiwsi-------~mek~dd~lq~~q~ae 562 (637)
T KOG4421|consen 490 DHLKSELHLLESRNEELQKERDRLFVDNSLVKRKLEIAMADAQLDAPAPDMDQIWSI-------FMEKFDDLLQLKQQAE 562 (637)
T ss_pred HHHhhhHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHHhhhhhhccCCCccHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 3466778888999999999998873221 11222 0 00111111223222211 1223345544444444
Q ss_pred HhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 779 EENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 844 (1096)
Q Consensus 779 Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qi 844 (1096)
.-..-.+.+.+.|.. .-.+++.+||..-+++.-+..+|.+|+.||+..+ -.|+.||
T Consensus 563 kalrfyeiefe~ll~-------~e~aaee~lk~~~del~s~~~~~h~ledeles~r---~gye~qi 618 (637)
T KOG4421|consen 563 KALRFYEIEFEHLLN-------CEEAAEEELKAKDDELASLGGALHMLEDELESTR---IGYEEQI 618 (637)
T ss_pred HHHHHHHHHHHHHHH-------HHHhhHHHHHHhHHHHHHhhhHHHHHHHHHHHHh---hhHHHHH
Confidence 444445555665554 2345677888888899999999999999998776 3577766
No 487
>PRK04406 hypothetical protein; Provisional
Probab=58.55 E-value=36 Score=31.04 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhh
Q 001340 720 KLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEEN 781 (1096)
Q Consensus 720 ~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~ 781 (1096)
.++..|..|+.++ +-.+..+.+|+..+..|-.+|+.|++....|.+..
T Consensus 8 ~le~Ri~~LE~~l--------------AfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 8 QLEERINDLECQL--------------AFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777 34567788899999999999999988887775543
No 488
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=58.52 E-value=3.4 Score=38.29 Aligned_cols=33 Identities=27% Similarity=0.903 Sum_probs=27.3
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcC--CCCCCCcc
Q 001340 1049 MCKVCFESPTAAILLPCRHFCLCKSCSLAC--SECPICRT 1086 (1096)
Q Consensus 1049 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~--~~CPiCr~ 1086 (1096)
+|+|| +..+-||.-.-+|+.|++.. ..|.+|..
T Consensus 29 kC~IC-----DS~VRP~tlVRiC~eC~~Gs~q~~ciic~~ 63 (110)
T KOG1705|consen 29 KCVIC-----DSYVRPCTLVRICDECNYGSYQGRCVICGG 63 (110)
T ss_pred ccccc-----ccccccceeeeeehhcCCccccCceEEecC
Confidence 79999 55667999888999998766 55999987
No 489
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=58.42 E-value=3.2e+02 Score=30.90 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 678 e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.|++++..|.+.+++..-++.....=+. -..--+...|+.|...|+.++...
T Consensus 85 ~Lq~ql~~l~akI~k~~~el~~L~TYkD---~EYPvK~vqIa~L~rqlq~lk~~q 136 (258)
T PF15397_consen 85 KLQQQLEQLDAKIQKTQEELNFLSTYKD---HEYPVKAVQIANLVRQLQQLKDSQ 136 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444444433322000 112223334455555555555544
No 490
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=58.36 E-value=83 Score=38.16 Aligned_cols=68 Identities=22% Similarity=0.335 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhHHhhhhHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 001340 766 ENEKLKLEHVQLSEENSGLHVQNQKLAEE-ASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAA 833 (1096)
Q Consensus 766 Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e-~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~ 833 (1096)
+..+++.+...|..+|..|..||++|... ...-..+..+...+-..+.++.+.|..+..++...|..+
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555331 122223333343444445555555544444444444433
No 491
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=58.31 E-value=4.1 Score=45.22 Aligned_cols=125 Identities=15% Similarity=0.228 Sum_probs=69.9
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHHhcCCce-eEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcCCCCe
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNG-TVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGRE 219 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~-tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~~~~ 219 (1096)
...+|...+-+...+.+.+.+ ..++.|..+ -++-||..|+|||.++- .++.......
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlVk--------------all~~y~~~G--- 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLVK--------------ALLNEYADQG--- 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHHH--------------HHHHHHhhcC---
Confidence 356677776555555555433 567777765 36779999999988753 2333332222
Q ss_pred eEEEEeeeeeecceeeecC------CCCCCcceEeeCCCCcEeeCceEEEeC-CHHHHHHHHHHHHhhcccCCcccccCC
Q 001340 220 FLLRVSYLEIYNEVINDLL------DPTGQNLRVREDAQGTYVEGIKEEVVL-SPGHALSFIAAGEEHRHVGSNNFNLLS 292 (1096)
Q Consensus 220 ~~v~vS~lEIYnE~i~DLL------~~~~~~l~ire~~~g~~v~gl~e~~V~-s~~e~~~ll~~g~~~R~~~~t~~N~~S 292 (1096)
+-.+||..+.+.||- ...+...- +|+.+|+--.-. +...+..+|.-|.. ......-+.++|
T Consensus 81 ----LRlIev~k~~L~~l~~l~~~l~~~~~kFI-------lf~DDLsFe~~d~~yk~LKs~LeGgle-~~P~NvliyATS 148 (249)
T PF05673_consen 81 ----LRLIEVSKEDLGDLPELLDLLRDRPYKFI-------LFCDDLSFEEGDTEYKALKSVLEGGLE-ARPDNVLIYATS 148 (249)
T ss_pred ----ceEEEECHHHhccHHHHHHHHhcCCCCEE-------EEecCCCCCCCcHHHHHHHHHhcCccc-cCCCcEEEEEec
Confidence 456778777666553 21111111 244454422211 23445555555543 335666677788
Q ss_pred CCceeEE
Q 001340 293 SRSHTIF 299 (1096)
Q Consensus 293 SRSH~If 299 (1096)
.|-|.|-
T Consensus 149 NRRHLv~ 155 (249)
T PF05673_consen 149 NRRHLVP 155 (249)
T ss_pred chhhccc
Confidence 8888773
No 492
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=57.94 E-value=19 Score=40.03 Aligned_cols=53 Identities=25% Similarity=0.219 Sum_probs=32.8
Q ss_pred EeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEEecCCCCC
Q 001340 263 VVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES 330 (1096)
Q Consensus 263 ~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr 330 (1096)
.+.+++++...+...... ..+.. ..-|.-++.|.|..... -.|+||||+|-.+
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~~-----~~~s~~~i~l~i~~p~~---------~~ltLIDlPGl~~ 137 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGTN-----KGISPVPINLRVYSPHV---------LNLTLIDLPGITK 137 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCCC-----CcccCcceEEEEeCCCC---------CceEEEeCCCccc
Confidence 345788888888765432 21111 23455677777765432 2489999999864
No 493
>PF13479 AAA_24: AAA domain
Probab=57.94 E-value=4.7 Score=43.63 Aligned_cols=20 Identities=30% Similarity=0.399 Sum_probs=16.8
Q ss_pred ceeEEeeccCCCCcccccCC
Q 001340 174 NGTVFAYGVTSSGKTHTMHG 193 (1096)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~G 193 (1096)
+..|+.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45689999999999998754
No 494
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=57.93 E-value=12 Score=48.30 Aligned_cols=53 Identities=26% Similarity=0.365 Sum_probs=33.4
Q ss_pred HHHHHhcCCceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHh-hcCCCCeeEEEEeeee
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSII-QDTPGREFLLRVSYLE 228 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i-~~~~~~~~~v~vS~lE 228 (1096)
.+..+.+|.|+.|.| +||||||-+- ++| ++..|+..- ....+.-+.|+||=+-
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA--------fLp-il~~l~~~~~~~~~~~i~~lYIsPLk 83 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA--------FLP-VINELLSLGKGKLEDGIYALYISPLK 83 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH--------HHH-HHHHHHhccCCCCCCceEEEEeCcHH
Confidence 355678999999887 9999999874 334 455555432 1112334556666543
No 495
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=57.90 E-value=34 Score=43.27 Aligned_cols=33 Identities=24% Similarity=0.188 Sum_probs=24.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcC
Q 001340 705 RILQEQLQNKCSENKKLQEKVNLLEQQLACQNG 737 (1096)
Q Consensus 705 ~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e 737 (1096)
-+|.+.++..+---.+|++-+..++.......+
T Consensus 669 ~iL~~F~~n~~~kmkkl~~~~k~A~~af~~~~~ 701 (830)
T KOG1923|consen 669 VILSEFLDNNKPKMKKLRKDFKDAAEAFEDVVE 701 (830)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHHHHHHHhHhH
Confidence 567788888888778888888777777744444
No 496
>PRK12704 phosphodiesterase; Provisional
Probab=57.86 E-value=4.6e+02 Score=32.65 Aligned_cols=49 Identities=18% Similarity=0.139 Sum_probs=24.9
Q ss_pred hhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcC
Q 001340 689 QCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNG 737 (1096)
Q Consensus 689 ~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e 737 (1096)
+|+++.-.|+.+..+....++.|.....++.+++++++.+..++...||
T Consensus 97 ~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~ 145 (520)
T PRK12704 97 NLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELE 145 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555555555555555555555555555554
No 497
>PF13166 AAA_13: AAA domain
Probab=57.73 E-value=5.2e+02 Score=33.16 Aligned_cols=188 Identities=16% Similarity=0.200 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHH
Q 001340 601 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQ 680 (1096)
Q Consensus 601 d~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~ 680 (1096)
+..+.|.+..+.+...+......+..+... ...........+.+...+...+..++.+.+.+..-........+..++.
T Consensus 284 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~~~~~ 362 (712)
T PF13166_consen 284 KLIEELEKAIKKLEKAIENIIEQLESILSE-NDFYEEFEEDKEELKSAIEALKEELEELKKALEKKIKNPSSPIELEEIN 362 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchh
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHH
Q 001340 681 QTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKV 760 (1096)
Q Consensus 681 ~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~ 760 (1096)
..+..+...++ .+...+.+....+..+.+++..++..+....- ......+..+....
T Consensus 363 ~~~~~l~~~i~--------------~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~~~~~ 419 (712)
T PF13166_consen 363 EDIDELNSIID--------------ELNELIEEHNEKIDNLKKEQNELKDKLWLHLI---------AKLKEDIEEYQKEI 419 (712)
T ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Q ss_pred HhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001340 761 QSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNL 812 (1096)
Q Consensus 761 ~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l 812 (1096)
..-..++..++.+...+..+...+..+...|..........+..+-.+|+.+
T Consensus 420 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 420 KELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
No 498
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=57.64 E-value=8.7 Score=45.66 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=16.6
Q ss_pred ceeEEeeccCCCCcccccC
Q 001340 174 NGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~ 192 (1096)
...|+.+|+||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578899999999999974
No 499
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=57.40 E-value=46 Score=32.41 Aligned_cols=55 Identities=27% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001340 773 EHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 841 (1096)
Q Consensus 773 e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e 841 (1096)
++..|.+....|+.++..+.+ ++..|...+..|..+|++|+-|.+.+++.+.+.+
T Consensus 2 dk~~l~~~l~~le~~l~~l~~--------------~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 2 DKKELFDRLDQLEQQLGQLLE--------------ELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred chHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 500
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=57.12 E-value=4.6 Score=38.90 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=0.0
Q ss_pred eEEeeccCCCCcccc
Q 001340 176 TVFAYGVTSSGKTHT 190 (1096)
Q Consensus 176 tIfaYGqTgSGKT~T 190 (1096)
.|+-.|++|||||+.
T Consensus 1 vI~I~G~~gsGKST~ 15 (121)
T PF13207_consen 1 VIIISGPPGSGKSTL 15 (121)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred CEEEECCCCCCHHHH
Done!