Query 001340
Match_columns 1096
No_of_seqs 738 out of 3516
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 23:06:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y65_A Kinesin, kinesin heavy 100.0 2.7E-88 9.2E-93 774.0 29.0 343 97-445 8-360 (365)
2 3cob_A Kinesin heavy chain-lik 100.0 1.3E-87 4.3E-92 768.7 28.1 342 97-452 2-351 (369)
3 3b6u_A Kinesin-like protein KI 100.0 2.8E-87 9.7E-92 765.8 28.5 342 96-438 17-372 (372)
4 2vvg_A Kinesin-2; motor protei 100.0 6.6E-87 2.3E-91 758.6 28.6 329 99-429 3-346 (350)
5 3bfn_A Kinesin-like protein KI 100.0 2.7E-87 9.3E-92 768.1 25.1 347 96-449 17-373 (388)
6 1goj_A Kinesin, kinesin heavy 100.0 1.5E-86 5E-91 757.8 30.5 332 98-431 4-343 (355)
7 1t5c_A CENP-E protein, centrom 100.0 6.2E-87 2.1E-91 759.3 27.0 328 99-430 3-340 (349)
8 2owm_A Nckin3-434, related to 100.0 1.9E-86 6.5E-91 775.4 29.2 330 96-427 34-422 (443)
9 2zfi_A Kinesin-like protein KI 100.0 1.3E-85 4.3E-90 753.6 27.7 329 99-427 3-363 (366)
10 1bg2_A Kinesin; motor protein, 100.0 2.6E-85 8.9E-90 739.9 27.0 315 97-418 4-325 (325)
11 3lre_A Kinesin-like protein KI 100.0 3.8E-85 1.3E-89 746.8 28.5 322 96-418 6-355 (355)
12 1x88_A Kinesin-like protein KI 100.0 2.1E-85 7.1E-90 749.9 23.5 328 97-426 5-358 (359)
13 2wbe_C Bipolar kinesin KRP-130 100.0 1.1E-84 3.6E-89 746.9 25.7 332 96-429 19-372 (373)
14 4a14_A Kinesin, kinesin-like p 100.0 2.4E-84 8.1E-89 738.5 27.2 320 94-416 5-344 (344)
15 3gbj_A KIF13B protein; kinesin 100.0 6.2E-84 2.1E-88 736.5 27.7 318 101-418 2-350 (354)
16 3nwn_A Kinesin-like protein KI 100.0 3.2E-84 1.1E-88 738.9 24.5 319 96-418 20-359 (359)
17 2h58_A Kinesin-like protein KI 100.0 3.1E-83 1.1E-87 724.4 30.5 318 98-419 2-329 (330)
18 2nr8_A Kinesin-like protein KI 100.0 5.4E-84 1.9E-88 736.7 23.9 321 94-418 17-358 (358)
19 3t0q_A AGR253WP; kinesin, alph 100.0 2.4E-82 8.2E-87 722.8 27.6 320 98-422 3-348 (349)
20 2rep_A Kinesin-like protein KI 100.0 2.1E-82 7.3E-87 727.2 26.9 319 96-418 18-376 (376)
21 1f9v_A Kinesin-like protein KA 100.0 3.9E-82 1.3E-86 719.9 27.0 320 99-423 2-346 (347)
22 2heh_A KIF2C protein; kinesin, 100.0 3.1E-82 1E-86 726.1 26.2 315 98-421 49-385 (387)
23 1ry6_A Internal kinesin; kines 100.0 4.6E-82 1.6E-86 721.3 27.4 320 101-427 1-340 (360)
24 3u06_A Protein claret segregat 100.0 1.1E-81 3.7E-86 729.2 28.4 326 97-429 56-394 (412)
25 1v8k_A Kinesin-like protein KI 100.0 5.6E-82 1.9E-86 727.9 25.1 317 98-423 69-407 (410)
26 4etp_A Kinesin-like protein KA 100.0 1.5E-80 5.1E-85 719.9 28.6 321 98-423 57-402 (403)
27 3dc4_A Kinesin-like protein NO 100.0 7.2E-80 2.5E-84 699.3 25.4 310 96-423 18-340 (344)
28 4h1g_A Maltose binding protein 100.0 2.1E-74 7.2E-79 717.8 27.7 318 97-419 371-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 7.2E-31 2.5E-35 244.9 3.5 98 344-441 2-99 (100)
30 3kin_B Kinesin heavy chain; mo 99.9 5.2E-28 1.8E-32 233.2 7.4 98 347-444 1-98 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 3.1E-24 1.1E-28 231.4 7.4 262 98-423 22-294 (298)
32 2ea5_A Cell growth regulator w 99.2 1.1E-11 3.8E-16 108.2 4.5 51 1046-1096 14-64 (68)
33 2yho_A E3 ubiquitin-protein li 99.1 4.5E-11 1.5E-15 107.4 5.8 48 1049-1096 20-67 (79)
34 2vje_B MDM4 protein; proto-onc 99.0 3E-11 1E-15 103.8 1.0 50 1046-1095 6-61 (63)
35 4ic3_A E3 ubiquitin-protein li 99.0 2E-10 7E-15 101.7 5.9 47 1049-1095 26-72 (74)
36 2ecg_A Baculoviral IAP repeat- 99.0 2.1E-10 7.2E-15 101.8 4.3 47 1049-1095 27-73 (75)
37 2vje_A E3 ubiquitin-protein li 98.9 9.2E-11 3.1E-15 101.1 0.5 49 1047-1095 8-62 (64)
38 3t6p_A Baculoviral IAP repeat- 98.7 5.7E-09 1.9E-13 118.5 4.5 47 1049-1095 297-343 (345)
39 1i84_S Smooth muscle myosin he 98.3 8.8E-07 3E-11 116.1 9.5 36 155-191 150-186 (1184)
40 1c1g_A Tropomyosin; contractIl 98.3 0.0017 5.8E-08 69.3 32.9 20 644-663 10-29 (284)
41 4ayc_A E3 ubiquitin-protein li 98.3 2.9E-07 9.8E-12 91.2 2.7 44 1048-1092 54-101 (138)
42 1i84_S Smooth muscle myosin he 98.1 2.2E-06 7.6E-11 112.3 8.1 38 199-236 432-472 (1184)
43 1chc_A Equine herpes virus-1 r 98.1 9.2E-07 3.1E-11 76.3 2.9 48 1047-1095 5-57 (68)
44 2ecn_A Ring finger protein 141 98.1 5.6E-07 1.9E-11 78.1 1.5 49 1045-1095 13-65 (70)
45 2d8t_A Dactylidin, ring finger 98.1 1.3E-06 4.3E-11 76.3 3.5 44 1046-1090 14-61 (71)
46 2ysl_A Tripartite motif-contai 98.1 1.5E-06 5.1E-11 76.0 3.4 44 1046-1090 19-69 (73)
47 2csy_A Zinc finger protein 183 98.1 1.5E-06 5.1E-11 77.8 3.2 46 1045-1091 13-62 (81)
48 2xeu_A Ring finger protein 4; 98.0 1.6E-06 5.5E-11 73.5 2.1 48 1047-1095 3-63 (64)
49 2y1n_A E3 ubiquitin-protein li 98.0 2.6E-06 8.9E-11 97.4 4.3 47 1048-1095 333-384 (389)
50 2ecm_A Ring finger and CHY zin 98.0 2.6E-06 8.8E-11 70.2 3.0 44 1046-1090 4-55 (55)
51 2ea6_A Ring finger protein 4; 98.0 1.6E-06 5.6E-11 74.6 1.8 45 1045-1090 13-68 (69)
52 2egp_A Tripartite motif-contai 98.0 2.9E-06 9.9E-11 75.2 2.9 45 1045-1090 10-65 (79)
53 3ng2_A RNF4, snurf, ring finge 98.0 1.9E-06 6.4E-11 74.8 1.5 44 1046-1090 9-63 (71)
54 2ct2_A Tripartite motif protei 97.9 3.4E-06 1.1E-10 76.3 3.1 46 1044-1090 12-68 (88)
55 2ecw_A Tripartite motif-contai 97.9 4.6E-06 1.6E-10 74.7 3.8 44 1046-1090 18-71 (85)
56 2djb_A Polycomb group ring fin 97.9 4.6E-06 1.6E-10 72.9 3.3 47 1045-1092 13-64 (72)
57 1bor_A Transcription factor PM 97.9 3.5E-06 1.2E-10 70.2 2.1 44 1046-1090 5-49 (56)
58 2ecy_A TNF receptor-associated 97.9 4.5E-06 1.5E-10 71.6 2.8 45 1045-1090 13-62 (66)
59 3fl2_A E3 ubiquitin-protein li 97.9 8.3E-06 2.8E-10 79.0 5.0 41 1049-1090 54-99 (124)
60 2ecv_A Tripartite motif-contai 97.9 5E-06 1.7E-10 74.4 3.2 44 1046-1090 18-71 (85)
61 1e4u_A Transcriptional repress 97.9 3E-06 1E-10 75.7 1.5 50 1045-1095 9-67 (78)
62 2kiz_A E3 ubiquitin-protein li 97.9 6E-06 2.1E-10 71.4 3.2 49 1045-1094 12-67 (69)
63 1iym_A EL5; ring-H2 finger, ub 97.9 8.2E-06 2.8E-10 67.2 3.6 43 1046-1089 4-54 (55)
64 2yur_A Retinoblastoma-binding 97.8 8.1E-06 2.8E-10 71.8 3.5 45 1044-1089 12-63 (74)
65 1jm7_A BRCA1, breast cancer ty 97.8 8.1E-06 2.8E-10 77.3 3.7 41 1049-1090 23-70 (112)
66 2l0b_A E3 ubiquitin-protein li 97.8 5.6E-06 1.9E-10 76.0 2.4 45 1046-1091 39-90 (91)
67 2ect_A Ring finger protein 126 97.8 8.3E-06 2.8E-10 72.3 3.0 45 1046-1091 14-65 (78)
68 1x4j_A Ring finger protein 38; 97.8 7.4E-06 2.5E-10 72.1 2.3 44 1046-1090 22-72 (75)
69 2ep4_A Ring finger protein 24; 97.8 9.2E-06 3.2E-10 71.2 2.8 47 1046-1093 14-67 (74)
70 3ztg_A E3 ubiquitin-protein li 97.8 1E-05 3.5E-10 74.0 2.9 44 1044-1088 10-60 (92)
71 1g25_A CDK-activating kinase a 97.7 7.6E-06 2.6E-10 70.0 1.5 42 1048-1090 4-55 (65)
72 3l11_A E3 ubiquitin-protein li 97.7 1.2E-05 4.1E-10 76.8 2.8 41 1049-1090 17-62 (115)
73 3lrq_A E3 ubiquitin-protein li 97.7 1.8E-05 6.3E-10 73.8 3.7 41 1049-1090 24-70 (100)
74 1z6u_A NP95-like ring finger p 97.7 1.2E-05 3.9E-10 80.9 2.2 42 1049-1091 80-126 (150)
75 1t1h_A Gspef-atpub14, armadill 97.7 1.6E-05 5.5E-10 70.4 2.6 45 1045-1090 6-55 (78)
76 2y43_A E3 ubiquitin-protein li 97.6 1.4E-05 4.9E-10 74.2 2.1 41 1049-1090 24-69 (99)
77 2ckl_B Ubiquitin ligase protei 97.6 1.3E-05 4.6E-10 81.5 1.8 41 1048-1089 55-101 (165)
78 2ckl_A Polycomb group ring fin 97.6 1.9E-05 6.6E-10 74.5 2.5 43 1047-1090 15-62 (108)
79 2ysj_A Tripartite motif-contai 97.6 3.3E-05 1.1E-09 65.5 3.0 39 1045-1084 18-63 (63)
80 1jm7_B BARD1, BRCA1-associated 97.5 3.1E-05 1.1E-09 74.3 3.0 40 1049-1089 24-66 (117)
81 2ecj_A Tripartite motif-contai 97.5 2.5E-05 8.7E-10 64.8 2.0 38 1046-1084 14-58 (58)
82 1wt6_A Myotonin-protein kinase 97.5 0.00012 4.2E-09 64.2 5.6 50 897-953 11-70 (81)
83 3hct_A TNF receptor-associated 97.5 4.2E-05 1.4E-09 73.4 2.9 45 1045-1090 16-65 (118)
84 1v87_A Deltex protein 2; ring- 97.4 3.8E-05 1.3E-09 73.1 1.2 43 1048-1091 26-95 (114)
85 3na7_A HP0958; flagellar bioge 97.3 0.015 5.1E-07 63.3 21.1 90 813-937 52-141 (256)
86 1rmd_A RAG1; V(D)J recombinati 97.3 6.6E-05 2.2E-09 71.7 2.1 41 1049-1090 25-70 (116)
87 2c2l_A CHIP, carboxy terminus 97.2 0.00015 5.2E-09 79.2 4.4 46 1044-1090 205-255 (281)
88 2kre_A Ubiquitin conjugation f 97.2 0.00013 4.6E-09 68.1 2.5 45 1045-1090 27-75 (100)
89 2kr4_A Ubiquitin conjugation f 97.1 0.00017 5.6E-09 65.4 2.7 45 1045-1090 12-60 (85)
90 4ap4_A E3 ubiquitin ligase RNF 97.1 0.0001 3.5E-09 71.4 1.3 44 1046-1090 6-60 (133)
91 1wgm_A Ubiquitin conjugation f 97.1 0.00017 5.9E-09 67.1 2.7 45 1045-1090 20-69 (98)
92 2f42_A STIP1 homology and U-bo 97.1 0.0004 1.4E-08 71.5 5.2 49 1041-1090 100-153 (179)
93 2ecl_A Ring-box protein 2; RNF 97.1 0.00026 8.8E-09 63.4 3.2 42 1048-1090 16-76 (81)
94 3knv_A TNF receptor-associated 97.1 7.1E-05 2.4E-09 74.4 -0.7 43 1045-1088 29-76 (141)
95 4ap4_A E3 ubiquitin ligase RNF 97.0 0.00027 9.1E-09 68.4 2.5 49 1046-1095 71-132 (133)
96 3hcs_A TNF receptor-associated 96.8 0.00051 1.7E-08 70.0 2.9 46 1044-1090 15-65 (170)
97 3vkg_A Dynein heavy chain, cyt 96.7 0.14 4.9E-06 72.3 26.6 68 762-829 2039-2106(3245)
98 3dpl_R Ring-box protein 1; ubi 96.6 0.00088 3E-08 63.3 3.0 41 1048-1089 38-100 (106)
99 2dfs_A Myosin-5A; myosin-V, in 96.4 0.025 8.6E-07 73.2 15.6 74 760-836 972-1045(1080)
100 3na7_A HP0958; flagellar bioge 96.4 0.45 1.5E-05 51.6 23.3 92 683-793 34-125 (256)
101 2yu4_A E3 SUMO-protein ligase 96.3 0.0018 6.3E-08 59.5 2.8 41 1046-1087 6-59 (94)
102 4a0k_B E3 ubiquitin-protein li 96.2 0.00073 2.5E-08 64.9 0.0 40 1049-1089 50-111 (117)
103 1wim_A KIAA0161 protein; ring 95.8 0.0016 5.6E-08 59.7 0.3 41 1046-1087 4-61 (94)
104 2v71_A Nuclear distribution pr 95.6 0.82 2.8E-05 47.1 19.4 38 594-631 3-40 (189)
105 3htk_C E3 SUMO-protein ligase 95.6 0.0036 1.2E-07 67.8 1.9 44 1046-1090 180-232 (267)
106 3vkg_A Dynein heavy chain, cyt 95.5 1.1 3.8E-05 63.7 26.2 189 635-833 1894-2096(3245)
107 2dfs_A Myosin-5A; myosin-V, in 95.4 0.16 5.3E-06 65.9 16.5 34 156-190 138-172 (1080)
108 2d8s_A Cellular modulator of i 95.4 0.01 3.6E-07 53.0 4.0 45 1046-1091 14-71 (80)
109 2v71_A Nuclear distribution pr 95.3 0.97 3.3E-05 46.6 18.5 42 892-937 136-177 (189)
110 3vk6_A E3 ubiquitin-protein li 94.9 0.009 3.1E-07 55.1 2.1 42 1049-1091 3-50 (101)
111 3o0z_A RHO-associated protein 94.4 4.9 0.00017 40.5 20.8 112 683-829 29-140 (168)
112 2bay_A PRE-mRNA splicing facto 93.0 0.034 1.2E-06 47.0 1.7 41 1048-1089 4-49 (61)
113 3ec2_A DNA replication protein 92.8 0.027 9.2E-07 57.0 1.1 52 140-192 5-56 (180)
114 3s4r_A Vimentin; alpha-helix, 92.8 1.3 4.5E-05 40.5 12.2 34 917-950 59-92 (93)
115 3oja_B Anopheles plasmodium-re 92.3 0.74 2.5E-05 55.5 13.1 25 761-785 554-578 (597)
116 2w58_A DNAI, primosome compone 91.5 0.066 2.3E-06 55.0 2.2 50 141-191 21-71 (202)
117 2qgz_A Helicase loader, putati 90.6 0.09 3.1E-06 58.5 2.2 51 141-192 120-170 (308)
118 2jee_A YIIU; FTSZ, septum, coi 90.4 2.7 9.3E-05 37.3 10.9 60 751-831 6-65 (81)
119 3oja_B Anopheles plasmodium-re 89.8 4.8 0.00016 48.3 16.8 31 702-732 463-493 (597)
120 2efr_A General control protein 89.2 19 0.00065 35.9 21.7 106 603-732 2-107 (155)
121 2v66_B Nuclear distribution pr 87.6 19 0.00065 33.9 15.7 22 897-918 88-109 (111)
122 3nmd_A CGMP dependent protein 87.4 0.98 3.4E-05 39.2 5.8 50 682-731 20-69 (72)
123 2fxo_A Myosin heavy chain, car 87.2 14 0.00049 35.5 14.9 82 763-844 32-120 (129)
124 3swk_A Vimentin; cytoskeleton, 87.1 6.4 0.00022 35.4 11.4 79 808-937 1-79 (86)
125 2efr_A General control protein 86.6 28 0.00094 34.8 20.7 117 703-833 29-152 (155)
126 3s4r_A Vimentin; alpha-helix, 86.2 9.1 0.00031 34.9 12.0 82 751-841 9-90 (93)
127 3t15_A Ribulose bisphosphate c 86.1 0.26 9E-06 54.2 2.2 48 144-191 2-53 (293)
128 1x79_B RAB GTPase binding effe 86.0 1.5 5.3E-05 41.3 6.9 100 600-708 5-104 (112)
129 2v4h_A NF-kappa-B essential mo 85.9 9.1 0.00031 35.8 11.8 28 705-732 34-61 (110)
130 2fxo_A Myosin heavy chain, car 85.7 26 0.0009 33.7 16.4 74 702-789 48-121 (129)
131 4etp_B Spindle POLE BODY-assoc 85.3 3.8 0.00013 45.3 10.6 121 98-241 57-183 (333)
132 3ol1_A Vimentin; structural ge 85.0 20 0.00067 34.2 14.4 39 803-841 16-54 (119)
133 2eqb_B RAB guanine nucleotide 84.6 24 0.00083 32.3 14.1 17 816-832 78-94 (97)
134 4b4t_M 26S protease regulatory 84.4 1 3.4E-05 52.6 6.0 74 141-214 177-272 (434)
135 3o0z_A RHO-associated protein 83.6 39 0.0013 34.0 18.0 37 798-834 95-131 (168)
136 3k1l_B Fancl; UBC, ring, RWD, 82.9 0.28 9.6E-06 55.0 0.5 44 1048-1092 309-375 (381)
137 2r62_A Cell division protease 82.6 0.55 1.9E-05 50.3 2.7 50 141-191 7-61 (268)
138 2bjv_A PSP operon transcriptio 82.6 0.45 1.5E-05 51.0 2.0 45 141-191 2-46 (265)
139 3bos_A Putative DNA replicatio 82.3 0.56 1.9E-05 48.6 2.5 45 142-192 25-70 (242)
140 4b4t_K 26S protease regulatory 81.6 1.7 5.7E-05 50.7 6.4 113 103-215 117-264 (428)
141 3hnw_A Uncharacterized protein 81.4 12 0.00042 36.6 11.5 66 703-789 69-134 (138)
142 3hnw_A Uncharacterized protein 81.3 7.6 0.00026 38.1 10.0 33 800-832 103-135 (138)
143 1jbk_A CLPB protein; beta barr 81.1 0.7 2.4E-05 45.6 2.6 30 163-192 32-61 (195)
144 1vyx_A ORF K3, K3RING; zinc-bi 81.0 0.75 2.6E-05 38.6 2.3 44 1046-1089 5-58 (60)
145 2w83_C C-JUN-amino-terminal ki 80.8 11 0.00039 32.8 9.5 42 801-842 24-65 (77)
146 3h4m_A Proteasome-activating n 80.8 0.55 1.9E-05 50.7 1.9 51 141-191 13-68 (285)
147 1l8q_A Chromosomal replication 80.3 0.77 2.6E-05 50.7 2.9 49 141-192 7-55 (324)
148 3vfd_A Spastin; ATPase, microt 80.1 0.26 9E-06 56.3 -1.0 52 140-191 110-165 (389)
149 3cf0_A Transitional endoplasmi 79.7 0.62 2.1E-05 51.3 1.9 51 141-191 11-66 (301)
150 3s84_A Apolipoprotein A-IV; fo 79.2 76 0.0026 34.4 23.8 35 918-952 213-248 (273)
151 1x79_B RAB GTPase binding effe 79.1 14 0.00047 34.9 10.4 13 815-827 92-104 (112)
152 3te6_A Regulatory protein SIR3 79.1 0.57 2E-05 52.4 1.4 29 163-191 34-62 (318)
153 1ixz_A ATP-dependent metallopr 78.5 0.44 1.5E-05 50.7 0.2 51 140-191 11-66 (254)
154 1g8p_A Magnesium-chelatase 38 78.4 0.67 2.3E-05 51.4 1.6 44 140-191 19-62 (350)
155 3ghg_A Fibrinogen alpha chain; 78.3 36 0.0012 39.9 15.6 57 678-737 103-159 (562)
156 2p65_A Hypothetical protein PF 77.9 0.79 2.7E-05 45.3 1.9 30 163-192 32-61 (187)
157 4b4t_L 26S protease subunit RP 77.8 3.1 0.0001 48.6 7.0 75 141-215 177-273 (437)
158 3s9g_A Protein hexim1; cyclin 77.6 10 0.00036 34.5 8.7 47 770-830 42-88 (104)
159 3tnu_B Keratin, type II cytosk 77.5 22 0.00077 34.1 12.0 20 815-834 104-123 (129)
160 3swk_A Vimentin; cytoskeleton, 76.6 12 0.0004 33.7 9.0 73 766-838 1-80 (86)
161 2ko5_A Ring finger protein Z; 76.0 0.83 2.8E-05 41.5 1.2 46 1047-1094 28-77 (99)
162 4b4t_J 26S protease regulatory 75.9 4 0.00014 47.1 7.2 74 142-215 145-240 (405)
163 2kjq_A DNAA-related protein; s 75.9 1.2 4.2E-05 43.8 2.6 18 175-192 37-54 (149)
164 3b9p_A CG5977-PA, isoform A; A 75.7 0.86 2.9E-05 49.5 1.5 51 141-191 17-71 (297)
165 2ocy_A RAB guanine nucleotide 75.3 68 0.0023 31.9 20.4 27 706-732 3-29 (154)
166 1d2n_A N-ethylmaleimide-sensit 75.3 1.3 4.3E-05 47.7 2.7 21 171-191 61-81 (272)
167 3tnu_A Keratin, type I cytoske 75.0 21 0.00071 34.5 11.0 20 815-834 106-125 (131)
168 4emc_A Monopolin complex subun 74.4 13 0.00045 37.9 9.5 28 705-732 9-36 (190)
169 1deq_A Fibrinogen (alpha chain 74.3 46 0.0016 37.6 14.6 28 761-788 130-157 (390)
170 3jsv_C NF-kappa-B essential mo 74.1 19 0.00064 32.8 9.4 78 705-793 5-89 (94)
171 3d8b_A Fidgetin-like protein 1 74.1 0.78 2.7E-05 51.8 0.7 51 141-191 80-134 (357)
172 3uk6_A RUVB-like 2; hexameric 74.0 0.97 3.3E-05 50.6 1.4 45 142-191 41-87 (368)
173 3mq7_A Bone marrow stromal ant 73.2 43 0.0015 31.5 11.8 54 679-732 51-108 (121)
174 4b4t_I 26S protease regulatory 72.9 6.9 0.00024 45.5 8.2 112 104-215 128-274 (437)
175 1iy2_A ATP-dependent metallopr 72.8 0.66 2.2E-05 50.2 -0.4 50 141-191 36-90 (278)
176 2zet_C Melanophilin; complex, 72.7 1.7 6E-05 43.4 2.7 66 1020-1086 41-116 (153)
177 2v1u_A Cell division control p 72.4 0.94 3.2E-05 50.6 0.8 22 171-192 41-62 (387)
178 2jee_A YIIU; FTSZ, septum, coi 72.4 35 0.0012 30.3 10.5 31 815-845 42-72 (81)
179 2z4s_A Chromosomal replication 72.1 1.7 5.7E-05 50.7 2.8 49 140-192 100-148 (440)
180 2a01_A Apolipoprotein A-I; fou 71.3 14 0.0005 39.4 9.8 15 630-644 85-99 (243)
181 2v4h_A NF-kappa-B essential mo 71.1 42 0.0014 31.4 11.2 27 764-790 82-108 (110)
182 2qz4_A Paraplegin; AAA+, SPG7, 71.1 0.72 2.5E-05 48.9 -0.5 19 173-191 38-56 (262)
183 3cve_A Homer protein homolog 1 70.9 32 0.0011 29.9 9.8 27 706-732 4-30 (72)
184 1qde_A EIF4A, translation init 70.7 1.7 6E-05 44.8 2.3 24 165-190 44-67 (224)
185 3i00_A HIP-I, huntingtin-inter 70.0 33 0.0011 32.8 10.7 65 765-832 15-79 (120)
186 1vec_A ATP-dependent RNA helic 69.8 2 6.8E-05 43.6 2.5 25 165-191 33-57 (206)
187 1xwi_A SKD1 protein; VPS4B, AA 69.6 1.2 4.2E-05 49.5 0.9 50 142-191 9-62 (322)
188 3a7p_A Autophagy protein 16; c 69.4 74 0.0025 31.5 13.2 27 762-788 65-91 (152)
189 3mq7_A Bone marrow stromal ant 69.2 65 0.0022 30.3 12.1 28 817-844 21-48 (121)
190 1lv7_A FTSH; alpha/beta domain 68.9 1.1 3.6E-05 47.8 0.2 50 141-191 8-62 (257)
191 2gxq_A Heat resistant RNA depe 68.7 2.1 7.1E-05 43.5 2.4 25 165-191 31-55 (207)
192 3syl_A Protein CBBX; photosynt 68.6 1.6 5.5E-05 47.5 1.6 20 172-191 65-84 (309)
193 1ykh_B RNA polymerase II holoe 68.6 56 0.0019 31.6 12.3 94 599-698 1-109 (132)
194 3ol1_A Vimentin; structural ge 68.4 79 0.0027 29.9 13.2 38 765-802 69-106 (119)
195 2chg_A Replication factor C sm 68.4 2.1 7.2E-05 43.2 2.3 21 171-191 35-55 (226)
196 3oja_A Leucine-rich immune mol 68.4 1.8E+02 0.006 33.7 19.6 27 815-841 443-469 (487)
197 1fnn_A CDC6P, cell division co 67.7 3.1 0.00011 46.5 3.8 45 142-191 14-61 (389)
198 3oja_A Leucine-rich immune mol 67.4 76 0.0026 36.8 15.8 28 766-793 429-456 (487)
199 3cvf_A Homer-3, homer protein 67.4 17 0.00058 32.2 7.5 30 703-732 7-36 (79)
200 3u59_A Tropomyosin beta chain; 67.3 76 0.0026 29.1 13.2 22 708-729 78-99 (101)
201 1sxj_C Activator 1 40 kDa subu 66.5 2.6 8.9E-05 46.9 2.7 42 143-192 23-64 (340)
202 1yke_B RNA polymerase II holoe 66.5 55 0.0019 32.4 12.0 114 599-732 1-129 (151)
203 3dkp_A Probable ATP-dependent 65.4 2.6 8.9E-05 44.2 2.4 24 165-190 59-82 (245)
204 2ct0_A Non-SMC element 1 homol 65.3 4.9 0.00017 35.1 3.7 44 1048-1092 16-66 (74)
205 3u1c_A Tropomyosin alpha-1 cha 65.3 84 0.0029 28.9 13.8 52 681-732 9-60 (101)
206 3bor_A Human initiation factor 64.9 1.7 5.8E-05 45.7 0.8 25 165-191 60-84 (237)
207 1p9r_A General secretion pathw 64.7 2.7 9.4E-05 48.7 2.6 29 164-192 157-185 (418)
208 3eie_A Vacuolar protein sortin 64.6 1.7 5.8E-05 48.2 0.7 50 142-191 15-68 (322)
209 2x8a_A Nuclear valosin-contain 64.5 1.2 4.1E-05 48.4 -0.5 50 142-191 7-61 (274)
210 2qp9_X Vacuolar protein sortin 64.3 2 6.8E-05 48.5 1.3 51 141-191 47-101 (355)
211 3ly5_A ATP-dependent RNA helic 64.1 2.3 7.7E-05 45.6 1.6 26 164-191 83-108 (262)
212 2pl3_A Probable ATP-dependent 62.8 3.1 0.00011 43.3 2.4 25 165-191 55-79 (236)
213 2v66_B Nuclear distribution pr 62.7 1E+02 0.0035 29.0 16.0 63 765-834 42-104 (111)
214 2pms_C Pneumococcal surface pr 62.7 53 0.0018 31.4 10.4 25 713-737 10-34 (125)
215 2qby_B CDC6 homolog 3, cell di 62.5 4 0.00014 45.6 3.3 46 141-191 16-62 (384)
216 1t6n_A Probable ATP-dependent 62.2 3.1 0.00011 42.8 2.2 25 165-191 44-68 (220)
217 3hu3_A Transitional endoplasmi 61.7 3 0.0001 49.4 2.1 50 142-191 201-255 (489)
218 3jvv_A Twitching mobility prot 61.6 3 0.0001 47.3 2.1 28 165-192 114-141 (356)
219 2e7s_A RAB guanine nucleotide 61.4 11 0.00039 36.5 5.7 30 703-732 104-133 (135)
220 4b4t_H 26S protease regulatory 61.1 4.3 0.00015 47.6 3.3 74 142-215 206-301 (467)
221 1go4_E MAD1 (mitotic arrest de 61.0 11 0.00038 34.8 5.3 66 762-830 16-91 (100)
222 3b6e_A Interferon-induced heli 60.8 1.8 6.1E-05 44.0 0.1 24 167-192 43-66 (216)
223 3a7p_A Autophagy protein 16; c 60.8 29 0.001 34.3 8.5 55 678-732 72-126 (152)
224 3he5_A Synzip1; heterodimeric 60.7 26 0.00088 26.7 6.2 41 777-817 8-48 (49)
225 2k48_A Nucleoprotein; viral pr 60.3 37 0.0013 31.4 8.5 25 642-666 37-61 (107)
226 3bas_A Myosin heavy chain, str 60.2 71 0.0024 28.7 10.5 51 764-835 34-84 (89)
227 2zan_A Vacuolar protein sortin 60.0 2.1 7.3E-05 49.8 0.5 51 141-191 130-184 (444)
228 3r6n_A Desmoplakin; spectrin r 59.6 2.6E+02 0.0087 32.5 19.1 31 924-954 238-268 (450)
229 3u1c_A Tropomyosin alpha-1 cha 59.4 1.1E+02 0.0037 28.1 15.1 10 805-814 84-93 (101)
230 3iuy_A Probable ATP-dependent 59.3 3.8 0.00013 42.4 2.3 25 165-191 50-74 (228)
231 3jsv_C NF-kappa-B essential mo 59.3 49 0.0017 30.1 9.1 49 779-829 40-90 (94)
232 1iqp_A RFCS; clamp loader, ext 59.3 4 0.00014 44.3 2.6 22 171-192 43-64 (327)
233 1joc_A EEA1, early endosomal a 59.3 35 0.0012 32.6 8.9 30 1047-1077 69-102 (125)
234 2i1j_A Moesin; FERM, coiled-co 59.3 8.4 0.00029 46.5 5.5 14 610-623 281-294 (575)
235 1hqc_A RUVB; extended AAA-ATPa 59.3 2.8 9.6E-05 45.8 1.3 45 142-191 9-55 (324)
236 3fmo_B ATP-dependent RNA helic 59.2 3.7 0.00013 45.1 2.3 27 165-191 122-148 (300)
237 2eqb_B RAB guanine nucleotide 59.1 95 0.0033 28.5 11.0 50 683-732 7-56 (97)
238 1wrb_A DJVLGB; RNA helicase, D 59.1 3.9 0.00013 43.1 2.3 24 166-191 54-77 (253)
239 4gkw_A Spindle assembly abnorm 58.8 1.3E+02 0.0044 28.8 16.0 20 815-834 113-132 (167)
240 2qby_A CDC6 homolog 1, cell di 58.1 2.8 9.7E-05 46.5 1.1 20 172-191 43-62 (386)
241 1u0j_A DNA replication protein 58.1 4.4 0.00015 44.1 2.6 29 163-191 90-121 (267)
242 2c9o_A RUVB-like 1; hexameric 58.0 4.5 0.00015 47.1 2.8 46 141-191 33-80 (456)
243 3pfi_A Holliday junction ATP-d 57.9 3.1 0.00011 45.9 1.4 44 143-191 27-72 (338)
244 1zxa_A CGMP-dependent protein 57.9 12 0.00042 32.0 4.7 43 690-732 13-55 (67)
245 4gkw_A Spindle assembly abnorm 57.6 1.3E+02 0.0046 28.7 21.1 58 675-732 12-76 (167)
246 3fe2_A Probable ATP-dependent 57.3 4 0.00014 42.8 2.1 25 165-191 59-83 (242)
247 3ghg_A Fibrinogen alpha chain; 57.2 84 0.0029 36.9 12.8 20 1051-1070 440-459 (562)
248 3qh9_A Liprin-beta-2; coiled-c 56.8 36 0.0012 30.1 7.4 31 695-725 43-77 (81)
249 2oxc_A Probable ATP-dependent 56.7 4.6 0.00016 42.1 2.3 24 166-191 55-78 (230)
250 3llm_A ATP-dependent RNA helic 56.4 4 0.00014 42.9 1.8 27 163-191 67-93 (235)
251 3eiq_A Eukaryotic initiation f 55.7 5 0.00017 45.1 2.6 25 165-191 70-94 (414)
252 3ber_A Probable ATP-dependent 55.7 4.8 0.00017 42.7 2.4 25 165-191 73-97 (249)
253 3co5_A Putative two-component 55.3 6 0.0002 38.2 2.8 20 173-192 26-45 (143)
254 2eyu_A Twitching motility prot 55.1 4.5 0.00015 43.6 2.0 20 173-192 24-43 (261)
255 3m91_A Proteasome-associated A 54.8 34 0.0012 27.7 6.5 27 812-838 14-40 (51)
256 1sxj_D Activator 1 41 kDa subu 54.7 4.2 0.00014 44.8 1.8 42 143-192 35-76 (353)
257 3cvf_A Homer-3, homer protein 54.6 36 0.0012 30.1 7.2 25 641-665 14-38 (79)
258 1in4_A RUVB, holliday junction 54.3 5.8 0.0002 44.1 2.8 17 175-191 52-68 (334)
259 2xnx_M M protein, M1-BC1; cell 53.9 67 0.0023 31.4 9.7 41 752-792 81-121 (146)
260 3i00_A HIP-I, huntingtin-inter 53.6 72 0.0025 30.4 9.8 70 640-732 15-84 (120)
261 4emc_A Monopolin complex subun 53.5 61 0.0021 33.1 9.7 45 688-732 13-57 (190)
262 1q0u_A Bstdead; DEAD protein, 53.4 3.4 0.00012 42.6 0.7 24 166-191 35-58 (219)
263 1tue_A Replication protein E1; 53.1 3.8 0.00013 43.0 1.0 27 166-192 48-76 (212)
264 3mq9_A Bone marrow stromal ant 53.0 37 0.0013 39.4 9.6 10 266-275 142-151 (471)
265 3fmp_B ATP-dependent RNA helic 52.8 5.5 0.00019 46.3 2.4 26 165-190 122-147 (479)
266 3pxg_A Negative regulator of g 52.5 7.7 0.00026 45.4 3.6 42 143-192 178-219 (468)
267 3n70_A Transport activator; si 52.4 4.8 0.00016 38.9 1.5 20 172-191 22-41 (145)
268 1njg_A DNA polymerase III subu 51.6 3.8 0.00013 41.7 0.7 17 175-191 46-62 (250)
269 3fht_A ATP-dependent RNA helic 51.6 6 0.0002 44.4 2.4 27 165-191 55-81 (412)
270 3pey_A ATP-dependent RNA helic 51.4 5.7 0.0002 44.1 2.2 27 165-191 35-61 (395)
271 2wt7_A Proto-oncogene protein 51.3 32 0.0011 28.9 6.3 35 808-842 24-58 (63)
272 1ofh_A ATP-dependent HSL prote 51.1 5.8 0.0002 42.8 2.1 18 174-191 50-67 (310)
273 2j0s_A ATP-dependent RNA helic 50.7 5.9 0.0002 44.7 2.1 24 166-191 68-91 (410)
274 1ci6_A Transcription factor AT 50.5 35 0.0012 28.7 6.3 39 763-801 21-59 (63)
275 3efg_A Protein SLYX homolog; x 50.4 23 0.0008 31.2 5.4 53 720-786 11-63 (78)
276 1ic2_A Tropomyosin alpha chain 50.2 78 0.0027 27.8 8.9 54 679-732 4-57 (81)
277 2fz4_A DNA repair protein RAD2 50.1 6.2 0.00021 41.7 2.0 24 167-192 103-126 (237)
278 2jun_A Midline-1; B-BOX, TRIM, 50.1 4.3 0.00015 37.0 0.7 29 1048-1077 4-35 (101)
279 1w5s_A Origin recognition comp 49.8 8.4 0.00029 43.3 3.2 25 167-191 40-69 (412)
280 4fi5_A Nucleoprotein; structur 49.8 58 0.002 30.4 8.1 65 641-737 23-90 (113)
281 2ic6_A Nucleocapsid protein; h 49.4 72 0.0024 28.1 8.2 64 641-736 6-72 (78)
282 1wt6_A Myotonin-protein kinase 48.8 55 0.0019 28.9 7.4 34 701-734 37-70 (81)
283 4fcw_A Chaperone protein CLPB; 48.7 5.5 0.00019 43.2 1.4 17 175-191 48-64 (311)
284 2i1j_A Moesin; FERM, coiled-co 48.6 16 0.00055 44.0 5.6 14 150-163 22-35 (575)
285 3m91_A Proteasome-associated A 48.0 45 0.0016 27.0 6.3 39 774-819 11-49 (51)
286 1l8d_A DNA double-strand break 47.9 1.7E+02 0.0057 26.9 12.6 40 798-837 62-101 (112)
287 1s2m_A Putative ATP-dependent 47.8 6.5 0.00022 44.0 1.9 25 165-191 51-75 (400)
288 2z0m_A 337AA long hypothetical 47.8 7 0.00024 42.3 2.1 24 166-191 25-48 (337)
289 2ce7_A Cell division protein F 47.8 4.9 0.00017 47.4 0.9 51 140-191 11-66 (476)
290 1t2k_D Cyclic-AMP-dependent tr 47.5 40 0.0014 28.0 6.3 33 809-841 24-56 (61)
291 1zbd_B Rabphilin-3A; G protein 47.3 4 0.00014 39.8 0.0 49 1021-1076 35-88 (134)
292 1gvn_B Zeta; postsegregational 47.1 11 0.00038 41.0 3.6 31 161-191 15-50 (287)
293 3pvs_A Replication-associated 47.0 8 0.00028 45.1 2.5 44 143-191 24-67 (447)
294 2oap_1 GSPE-2, type II secreti 46.9 7.3 0.00025 46.3 2.2 21 170-192 258-278 (511)
295 2fiy_A Protein FDHE homolog; F 46.9 5.9 0.0002 44.0 1.3 42 1046-1087 181-231 (309)
296 3a7o_A Autophagy protein 16; c 46.2 76 0.0026 27.2 7.5 20 706-725 22-41 (75)
297 2r44_A Uncharacterized protein 46.1 5.4 0.00019 43.9 0.9 17 175-191 47-63 (331)
298 1m1j_C Fibrinogen gamma chain; 46.0 2.5E+02 0.0086 32.2 14.6 49 680-735 83-131 (409)
299 2ewv_A Twitching motility prot 45.9 5.8 0.0002 45.1 1.1 21 172-192 134-154 (372)
300 2i4i_A ATP-dependent RNA helic 45.3 8.1 0.00028 43.5 2.2 24 166-191 46-69 (417)
301 2w83_C C-JUN-amino-terminal ki 45.1 99 0.0034 27.0 8.3 58 766-830 10-74 (77)
302 1deq_A Fibrinogen (alpha chain 45.0 2.4E+02 0.008 31.9 13.5 24 808-831 135-158 (390)
303 3h1t_A Type I site-specific re 44.9 8.1 0.00028 46.3 2.2 28 164-192 189-216 (590)
304 3mq9_A Bone marrow stromal ant 44.9 3.2E+02 0.011 31.3 15.8 12 721-732 402-413 (471)
305 3u61_B DNA polymerase accessor 44.8 7.4 0.00025 42.6 1.7 19 174-192 48-66 (324)
306 3a7o_A Autophagy protein 16; c 44.7 93 0.0032 26.7 7.8 21 643-663 21-41 (75)
307 3r2p_A Apolipoprotein A-I; amp 44.4 52 0.0018 33.4 7.9 53 680-732 110-164 (185)
308 2dhr_A FTSH; AAA+ protein, hex 44.1 4.2 0.00014 48.3 -0.5 51 140-191 26-81 (499)
309 2chq_A Replication factor C sm 44.0 6.4 0.00022 42.5 1.0 22 171-192 35-56 (319)
310 2ic9_A Nucleocapsid protein; h 44.0 89 0.003 28.5 8.2 65 641-737 6-73 (96)
311 3nmd_A CGMP dependent protein 43.8 43 0.0015 29.0 5.8 19 646-664 32-50 (72)
312 3tnu_B Keratin, type II cytosk 43.6 1.9E+02 0.0064 27.6 11.3 39 680-718 35-73 (129)
313 3s84_A Apolipoprotein A-IV; fo 43.6 3.4E+02 0.012 29.2 27.7 54 679-732 42-97 (273)
314 1sxj_E Activator 1 40 kDa subu 42.7 7.4 0.00025 43.0 1.3 16 177-192 39-54 (354)
315 2k48_A Nucleoprotein; viral pr 42.4 1.1E+02 0.0039 28.2 8.7 66 599-664 33-99 (107)
316 4b3f_X DNA-binding protein smu 42.2 9.2 0.00031 46.6 2.1 27 165-192 197-223 (646)
317 1m1j_B Fibrinogen beta chain; 42.2 3.1E+02 0.01 32.0 14.7 14 719-732 178-191 (464)
318 3fho_A ATP-dependent RNA helic 42.2 9.7 0.00033 44.8 2.3 25 167-191 151-175 (508)
319 2xnx_M M protein, M1-BC1; cell 41.9 1.1E+02 0.0039 29.8 9.2 14 774-787 35-48 (146)
320 2cs3_A Protein C14ORF4, MY039 41.6 5.2 0.00018 35.2 -0.1 30 1047-1077 15-48 (93)
321 3oiy_A Reverse gyrase helicase 41.3 9.4 0.00032 43.2 1.9 24 165-190 29-52 (414)
322 3q8t_A Beclin-1; autophagy, AT 41.3 2.1E+02 0.007 26.0 13.4 59 765-823 25-83 (96)
323 1ci6_A Transcription factor AT 41.3 59 0.002 27.3 6.3 32 809-840 25-56 (63)
324 1xti_A Probable ATP-dependent 41.2 10 0.00034 42.2 2.1 25 165-191 38-62 (391)
325 1qvr_A CLPB protein; coiled co 41.2 8.4 0.00029 48.6 1.6 42 143-192 168-209 (854)
326 3hws_A ATP-dependent CLP prote 41.0 8.6 0.0003 43.0 1.5 18 174-191 51-68 (363)
327 1ojl_A Transcriptional regulat 40.8 8.2 0.00028 42.4 1.3 20 172-191 23-42 (304)
328 4h22_A Leucine-rich repeat fli 40.7 1E+02 0.0035 28.5 8.2 56 719-788 26-81 (103)
329 1rif_A DAR protein, DNA helica 40.7 7.4 0.00025 41.8 0.9 24 167-192 123-146 (282)
330 1sxj_B Activator 1 37 kDa subu 40.4 11 0.00038 40.7 2.2 23 170-192 38-60 (323)
331 1n0w_A DNA repair protein RAD5 39.9 11 0.00038 39.0 2.0 31 162-192 9-42 (243)
332 3cve_A Homer protein homolog 1 39.6 1.9E+02 0.0064 25.1 10.1 27 701-727 41-67 (72)
333 3i5x_A ATP-dependent RNA helic 39.5 13 0.00044 44.0 2.8 27 165-191 102-128 (563)
334 1jr3_A DNA polymerase III subu 39.1 16 0.00055 40.4 3.3 18 174-191 38-55 (373)
335 2l7b_A Apolipoprotein E, APO-E 38.9 60 0.002 35.9 7.8 56 681-736 114-171 (307)
336 1m1j_B Fibrinogen beta chain; 38.9 4.4E+02 0.015 30.7 15.3 26 806-831 167-192 (464)
337 1w36_D RECD, exodeoxyribonucle 38.4 11 0.00038 45.6 2.0 19 174-192 164-182 (608)
338 1hv8_A Putative ATP-dependent 38.4 11 0.00039 41.2 1.9 25 166-191 37-61 (367)
339 2lw1_A ABC transporter ATP-bin 38.2 1.4E+02 0.0048 26.6 8.8 21 703-723 64-84 (89)
340 2db3_A ATP-dependent RNA helic 38.1 12 0.00041 43.0 2.1 24 166-191 87-110 (434)
341 1gd2_E Transcription factor PA 38.1 44 0.0015 28.8 5.1 15 770-784 34-48 (70)
342 1fuu_A Yeast initiation factor 38.1 7.4 0.00025 43.3 0.3 25 165-191 51-75 (394)
343 2v1x_A ATP-dependent DNA helic 38.1 15 0.00051 44.4 3.0 25 165-191 52-76 (591)
344 2zqm_A Prefoldin beta subunit 38.0 2.4E+02 0.0082 25.8 11.0 28 705-732 16-43 (117)
345 3tnu_A Keratin, type I cytoske 37.9 1.7E+02 0.0059 27.9 10.0 24 765-788 98-121 (131)
346 3pxi_A Negative regulator of g 37.5 18 0.00063 44.8 3.8 42 143-192 178-219 (758)
347 4h22_A Leucine-rich repeat fli 37.5 1.5E+02 0.0051 27.4 8.7 67 774-840 18-84 (103)
348 3hhm_B NISH2 P85alpha; PI3KCA, 37.0 1.6E+02 0.0053 33.5 11.0 112 607-733 132-250 (373)
349 1go4_E MAD1 (mitotic arrest de 37.0 76 0.0026 29.3 6.8 32 703-734 13-44 (100)
350 1cii_A Colicin IA; bacteriocin 37.0 5.5E+02 0.019 29.7 21.4 88 749-836 333-420 (602)
351 4a2p_A RIG-I, retinoic acid in 37.0 13 0.00046 43.4 2.4 25 165-191 15-39 (556)
352 1x8y_A Lamin A/C; structural p 36.9 1.7E+02 0.0056 26.1 9.0 48 766-834 29-76 (86)
353 3ghg_C Fibrinogen gamma chain; 36.7 4.5E+02 0.015 30.1 14.6 53 680-732 83-135 (411)
354 3cf2_A TER ATPase, transitiona 36.1 17 0.00059 45.5 3.2 51 141-191 200-255 (806)
355 1g6u_A Domain swapped dimer; d 36.1 47 0.0016 25.2 4.2 27 709-735 20-46 (48)
356 2e7s_A RAB guanine nucleotide 36.0 1.1E+02 0.0037 29.8 8.0 59 764-822 24-82 (135)
357 1um8_A ATP-dependent CLP prote 35.4 13 0.00043 41.9 1.7 18 174-191 72-89 (376)
358 2wvr_A Geminin; DNA replicatio 35.4 1.2E+02 0.0042 31.2 8.7 45 749-793 95-143 (209)
359 2p5t_B PEZT; postsegregational 35.3 20 0.00068 38.0 3.2 16 175-190 33-48 (253)
360 2dgc_A Protein (GCN4); basic d 35.3 45 0.0015 28.1 4.7 32 807-838 30-61 (63)
361 2cvh_A DNA repair and recombin 35.1 15 0.00051 37.3 2.0 29 164-192 7-38 (220)
362 3tbk_A RIG-I helicase domain; 35.0 15 0.00052 42.8 2.4 24 166-191 13-36 (555)
363 2ic6_A Nucleocapsid protein; h 34.8 1.2E+02 0.0042 26.6 7.3 64 601-664 5-69 (78)
364 1qvr_A CLPB protein; coiled co 34.6 11 0.00037 47.7 1.1 17 175-191 589-605 (854)
365 3c9i_A Tail needle protein GP2 34.5 1.3E+02 0.0043 31.1 8.5 56 677-732 80-135 (242)
366 1c4o_A DNA nucleotide excision 34.5 21 0.00072 43.7 3.6 46 142-193 2-47 (664)
367 3upu_A ATP-dependent DNA helic 34.4 17 0.00059 42.2 2.7 37 151-192 27-63 (459)
368 2w0m_A SSO2452; RECA, SSPF, un 34.3 14 0.00048 37.6 1.7 29 164-192 10-41 (235)
369 3b85_A Phosphate starvation-in 33.9 17 0.00057 37.8 2.2 26 164-191 14-39 (208)
370 2gk6_A Regulator of nonsense t 33.9 15 0.00051 44.6 2.1 25 166-192 189-213 (624)
371 2fwr_A DNA repair protein RAD2 33.8 15 0.00052 42.4 2.1 23 167-191 103-125 (472)
372 1ic2_A Tropomyosin alpha chain 33.6 2.4E+02 0.0082 24.6 10.8 26 815-840 42-67 (81)
373 3nw0_A Non-structural maintena 33.3 21 0.00073 38.0 2.9 46 1047-1093 180-232 (238)
374 2jne_A Hypothetical protein YF 33.3 10 0.00035 34.7 0.4 40 1046-1090 31-73 (101)
375 3edv_A Spectrin beta chain, br 33.2 4.7E+02 0.016 27.8 22.6 30 598-627 36-66 (323)
376 3lay_A Zinc resistance-associa 33.1 1.2E+02 0.004 30.8 8.2 53 641-699 86-138 (175)
377 3c8u_A Fructokinase; YP_612366 33.0 20 0.00068 36.6 2.6 29 163-191 9-39 (208)
378 3sqw_A ATP-dependent RNA helic 32.8 19 0.00065 43.0 2.8 27 165-191 51-77 (579)
379 2zxx_A Geminin; coiled-coil, c 32.6 1.5E+02 0.005 26.2 7.5 24 770-793 25-48 (79)
380 2ic9_A Nucleocapsid protein; h 32.6 1.3E+02 0.0044 27.5 7.3 66 599-664 3-69 (96)
381 4gl2_A Interferon-induced heli 32.5 17 0.00057 44.3 2.2 25 165-191 15-39 (699)
382 1rz3_A Hypothetical protein rb 32.4 22 0.00074 36.2 2.7 28 164-191 9-39 (201)
383 1wlq_A Geminin; coiled-coil; 2 32.3 1.8E+02 0.0062 25.8 8.1 30 764-793 37-66 (83)
384 3lw7_A Adenylate kinase relate 32.3 12 0.00042 36.0 0.8 16 176-191 3-18 (179)
385 1gk7_A Vimentin; intermediate 32.3 90 0.0031 23.8 5.4 21 811-831 17-37 (39)
386 4a74_A DNA repair and recombin 32.0 19 0.00064 36.7 2.2 28 164-191 12-42 (231)
387 1ypw_A Transitional endoplasmi 31.7 18 0.0006 45.5 2.3 52 140-191 199-255 (806)
388 1wp9_A ATP-dependent RNA helic 31.6 17 0.00057 41.1 1.9 25 165-192 17-41 (494)
389 4gp7_A Metallophosphoesterase; 31.4 13 0.00043 37.0 0.7 17 176-192 11-27 (171)
390 2qag_C Septin-7; cell cycle, c 31.2 13 0.00043 43.1 0.8 23 169-191 26-48 (418)
391 3b9q_A Chloroplast SRP recepto 31.1 23 0.00078 39.0 2.8 16 176-191 102-117 (302)
392 2wt7_A Proto-oncogene protein 31.0 1.2E+02 0.0042 25.3 6.7 30 764-793 22-51 (63)
393 4ag6_A VIRB4 ATPase, type IV s 31.0 12 0.00041 42.4 0.5 18 175-192 36-53 (392)
394 2yy0_A C-MYC-binding protein; 31.0 72 0.0024 26.0 5.0 30 703-732 20-49 (53)
395 3nbx_X ATPase RAVA; AAA+ ATPas 30.7 20 0.00069 42.4 2.4 25 165-191 34-58 (500)
396 1t2k_D Cyclic-AMP-dependent tr 30.6 1.3E+02 0.0043 24.9 6.7 29 765-793 22-50 (61)
397 2r8r_A Sensor protein; KDPD, P 30.4 12 0.00042 39.7 0.5 19 174-192 6-24 (228)
398 3tau_A Guanylate kinase, GMP k 30.4 15 0.00052 37.6 1.1 17 175-191 9-25 (208)
399 1jnm_A Proto-oncogene C-JUN; B 30.2 60 0.002 27.1 4.6 33 808-840 23-55 (62)
400 2qnr_A Septin-2, protein NEDD5 30.1 13 0.00046 40.7 0.7 24 168-191 12-35 (301)
401 1hjb_A Ccaat/enhancer binding 29.9 1.1E+02 0.0039 27.4 6.6 31 812-842 41-71 (87)
402 2ykg_A Probable ATP-dependent 29.8 20 0.00069 43.5 2.3 24 166-191 22-45 (696)
403 2q6q_A Spindle POLE BODY compo 29.7 2.6E+02 0.009 23.8 8.9 30 703-732 4-33 (74)
404 1sxj_A Activator 1 95 kDa subu 29.6 19 0.00065 42.6 2.0 19 174-192 77-95 (516)
405 3pwf_A Rubrerythrin; non heme 29.6 41 0.0014 33.9 4.2 15 1079-1093 154-168 (170)
406 2zqm_A Prefoldin beta subunit 29.5 3.3E+02 0.011 24.9 11.9 27 702-728 20-46 (117)
407 1gs9_A Apolipoprotein E, APOE4 29.5 4E+02 0.014 26.5 11.5 53 612-669 28-81 (165)
408 3q8t_A Beclin-1; autophagy, AT 29.5 3.2E+02 0.011 24.8 13.9 31 702-732 18-48 (96)
409 3lfu_A DNA helicase II; SF1 he 29.4 16 0.00055 44.0 1.4 21 172-192 20-40 (647)
410 1e9r_A Conjugal transfer prote 29.4 12 0.00043 42.8 0.3 18 174-191 53-70 (437)
411 2no2_A HIP-I, huntingtin-inter 29.3 3.5E+02 0.012 25.1 13.1 24 760-783 49-72 (107)
412 3tr0_A Guanylate kinase, GMP k 28.8 15 0.0005 37.0 0.7 16 176-191 9-24 (205)
413 2dr3_A UPF0273 protein PH0284; 28.7 20 0.00067 37.0 1.7 26 166-191 12-40 (247)
414 1uii_A Geminin; human, DNA rep 28.7 1.6E+02 0.0056 26.1 7.2 33 806-838 45-77 (83)
415 1dh3_A Transcription factor CR 28.7 49 0.0017 27.1 3.7 30 808-837 23-52 (55)
416 4fm3_A Uncharacterized hypothe 28.5 3.5E+02 0.012 24.8 12.3 80 653-732 6-87 (98)
417 3mov_A Lamin-B1; LMNB1, B-type 28.5 3E+02 0.01 24.9 9.4 16 817-832 68-83 (95)
418 1uii_A Geminin; human, DNA rep 28.2 2.5E+02 0.0085 25.0 8.2 31 763-793 44-74 (83)
419 3iv1_A Tumor susceptibility ge 28.2 3.1E+02 0.011 24.1 9.5 27 705-731 14-40 (78)
420 1kgd_A CASK, peripheral plasma 28.0 15 0.00052 36.6 0.7 16 176-191 7-22 (180)
421 3sop_A Neuronal-specific septi 27.7 16 0.00054 39.5 0.7 19 173-191 1-19 (270)
422 1r6b_X CLPA protein; AAA+, N-t 27.6 25 0.00084 43.5 2.6 28 165-192 198-225 (758)
423 1r6b_X CLPA protein; AAA+, N-t 27.5 30 0.001 42.8 3.3 17 175-191 489-505 (758)
424 2akf_A Coronin-1A; coiled coil 27.5 98 0.0033 22.0 4.4 26 707-732 4-29 (32)
425 1deb_A APC protein, adenomatou 27.5 2.3E+02 0.0079 22.7 7.0 41 765-805 10-50 (54)
426 3m9b_A Proteasome-associated A 27.4 40 0.0014 36.1 3.7 35 696-730 62-96 (251)
427 2jlq_A Serine protease subunit 27.4 18 0.0006 42.0 1.1 25 166-191 12-36 (451)
428 3a00_A Guanylate kinase, GMP k 27.3 15 0.00052 36.8 0.5 15 177-191 4-18 (186)
429 1hjb_A Ccaat/enhancer binding 27.2 1.1E+02 0.0036 27.6 5.9 40 765-804 36-75 (87)
430 3e1s_A Exodeoxyribonuclease V, 27.2 23 0.00077 42.7 2.1 26 165-192 197-222 (574)
431 2xzl_A ATP-dependent helicase 27.0 22 0.00075 44.6 2.0 25 166-192 369-393 (802)
432 3pxi_A Negative regulator of g 26.9 26 0.00089 43.4 2.6 16 176-191 523-538 (758)
433 2wjy_A Regulator of nonsense t 26.8 23 0.00079 44.4 2.1 26 165-192 364-389 (800)
434 2dgc_A Protein (GCN4); basic d 26.6 1.8E+02 0.0063 24.3 7.0 45 900-952 17-61 (63)
435 1gm5_A RECG; helicase, replica 26.6 22 0.00076 44.4 1.9 25 167-191 382-406 (780)
436 1wle_A Seryl-tRNA synthetase; 26.6 6.2E+02 0.021 29.7 14.1 108 593-728 33-149 (501)
437 3trf_A Shikimate kinase, SK; a 26.5 19 0.00064 35.7 1.0 15 176-190 7-21 (185)
438 1z60_A TFIIH basal transcripti 26.5 27 0.00093 29.1 1.8 36 1049-1085 17-59 (59)
439 1zp6_A Hypothetical protein AT 26.4 17 0.00058 36.1 0.7 17 175-191 10-26 (191)
440 1ly1_A Polynucleotide kinase; 26.3 19 0.00065 35.2 1.0 15 176-190 4-18 (181)
441 1fxk_A Prefoldin; archaeal pro 26.2 3.6E+02 0.012 24.2 10.3 96 696-791 2-105 (107)
442 1lvg_A Guanylate kinase, GMP k 26.2 16 0.00055 37.2 0.4 16 176-191 6-21 (198)
443 1lwu_C Fibrinogen gamma chain; 26.0 95 0.0032 34.6 6.6 53 680-732 4-56 (323)
444 2orw_A Thymidine kinase; TMTK, 26.0 13 0.00043 37.8 -0.4 17 176-192 5-21 (184)
445 2b8t_A Thymidine kinase; deoxy 26.0 14 0.0005 38.8 0.0 19 175-193 13-31 (223)
446 3iij_A Coilin-interacting nucl 25.8 18 0.00063 35.7 0.8 17 175-191 12-28 (180)
447 1qhx_A CPT, protein (chloramph 25.8 20 0.00067 35.2 1.0 17 175-191 4-20 (178)
448 4a4z_A Antiviral helicase SKI2 25.8 27 0.00093 44.9 2.5 24 165-190 47-70 (997)
449 1kd8_A GABH AIV, GCN4 acid bas 25.8 76 0.0026 23.7 3.7 26 804-829 5-30 (36)
450 1m1j_A Fibrinogen alpha subuni 25.5 8.3E+02 0.028 28.2 15.9 132 604-762 54-188 (491)
451 2og2_A Putative signal recogni 25.4 34 0.0011 38.7 2.9 16 176-191 159-174 (359)
452 1ye8_A Protein THEP1, hypothet 25.4 17 0.00059 36.6 0.5 15 177-191 3-17 (178)
453 3iv1_A Tumor susceptibility ge 25.3 3.5E+02 0.012 23.8 9.1 19 434-452 13-31 (78)
454 2oca_A DAR protein, ATP-depend 25.3 21 0.00072 41.6 1.3 23 168-192 124-146 (510)
455 3e70_C DPA, signal recognition 25.1 38 0.0013 37.7 3.2 17 175-191 130-146 (328)
456 3ghg_C Fibrinogen gamma chain; 25.0 8.2E+02 0.028 28.0 15.2 30 703-732 39-68 (411)
457 1cii_A Colicin IA; bacteriocin 25.0 6.6E+02 0.023 29.1 13.0 32 703-734 350-381 (602)
458 3r2p_A Apolipoprotein A-I; amp 24.9 3.5E+02 0.012 27.1 10.3 12 721-732 109-120 (185)
459 2k0a_A PRE-mRNA-splicing facto 24.9 20 0.00067 33.2 0.7 34 1049-1087 31-66 (109)
460 1lkx_A Myosin IE heavy chain; 24.8 33 0.0011 42.2 3.0 35 156-191 76-111 (697)
461 1rj9_A FTSY, signal recognitio 24.8 21 0.00072 39.3 1.1 17 175-191 103-119 (304)
462 3hhm_B NISH2 P85alpha; PI3KCA, 24.8 7.8E+02 0.027 27.7 15.7 27 811-837 223-249 (373)
463 3m9b_A Proteasome-associated A 24.6 68 0.0023 34.3 4.9 21 808-828 76-96 (251)
464 2oqq_A Transcription factor HY 24.5 2E+02 0.007 22.2 6.0 36 751-786 3-38 (42)
465 2ga8_A Hypothetical 39.9 kDa p 24.4 38 0.0013 38.3 3.1 32 160-191 6-41 (359)
466 4a2q_A RIG-I, retinoic acid in 24.3 29 0.001 43.2 2.4 25 165-191 256-280 (797)
467 1wlq_A Geminin; coiled-coil; 2 24.2 3.6E+02 0.012 23.9 8.5 56 748-834 17-72 (83)
468 2b9c_A Striated-muscle alpha t 24.1 5.1E+02 0.017 25.3 12.6 45 800-844 66-110 (147)
469 2lw1_A ABC transporter ATP-bin 23.9 2.5E+02 0.0085 24.9 7.9 21 644-664 26-46 (89)
470 4a2w_A RIG-I, retinoic acid in 23.8 28 0.00097 44.3 2.2 24 166-191 257-280 (936)
471 1jnm_A Proto-oncogene C-JUN; B 23.8 2.6E+02 0.009 23.0 7.5 48 898-953 7-54 (62)
472 2j41_A Guanylate kinase; GMP, 23.7 21 0.00071 35.9 0.7 16 176-191 8-23 (207)
473 1fmh_A General control protein 23.7 1.3E+02 0.0044 21.2 4.4 27 704-730 3-29 (33)
474 2vrw_B P95VAV, VAV1, proto-onc 23.6 34 0.0012 38.9 2.6 65 1020-1085 325-399 (406)
475 4etp_A Kinesin-like protein KA 23.6 1.4E+02 0.005 34.0 7.8 57 676-732 5-61 (403)
476 1w9i_A Myosin II heavy chain; 23.5 36 0.0012 42.3 3.0 35 156-191 154-189 (770)
477 3lnc_A Guanylate kinase, GMP k 23.5 24 0.00082 36.5 1.2 16 176-191 29-44 (231)
478 1uaa_A REP helicase, protein ( 23.5 23 0.0008 43.1 1.2 20 173-192 14-33 (673)
479 1j8m_F SRP54, signal recogniti 23.4 52 0.0018 36.0 3.9 17 176-192 100-116 (297)
480 3bas_A Myosin heavy chain, str 23.4 3.9E+02 0.013 23.7 10.8 31 702-732 49-79 (89)
481 1odf_A YGR205W, hypothetical 3 23.3 43 0.0015 36.5 3.2 37 155-191 10-48 (290)
482 1x8y_A Lamin A/C; structural p 23.3 3.2E+02 0.011 24.1 8.4 24 765-788 49-72 (86)
483 1oyw_A RECQ helicase, ATP-depe 23.3 18 0.00063 42.8 0.3 25 165-191 33-57 (523)
484 1gk4_A Vimentin; intermediate 23.2 3.8E+02 0.013 23.5 11.6 18 815-832 55-72 (84)
485 3fx0_A NF-kappa-B essential mo 23.2 24 0.00083 32.1 0.9 75 706-791 21-95 (96)
486 2oa5_A Hypothetical protein BQ 23.2 57 0.002 30.4 3.4 41 809-849 10-59 (110)
487 2bdt_A BH3686; alpha-beta prot 23.1 21 0.00073 35.5 0.7 16 176-191 4-19 (189)
488 3onj_A T-snare VTI1; helix, HA 23.1 4.2E+02 0.014 23.9 10.5 62 699-780 31-95 (97)
489 2px0_A Flagellar biosynthesis 23.1 21 0.00071 39.2 0.6 18 175-192 106-123 (296)
490 1weo_A Cellulose synthase, cat 23.1 40 0.0014 30.4 2.3 44 1046-1089 15-69 (93)
491 3c3g_A Alpha/beta peptide with 22.9 1.5E+02 0.0051 21.7 4.7 29 704-732 2-30 (33)
492 2enz_A NPKC-theta, protein kin 22.9 16 0.00053 30.8 -0.4 38 1037-1078 13-50 (65)
493 1gu4_A CAAT/enhancer binding p 22.9 1.5E+02 0.005 26.1 5.9 41 804-844 33-73 (78)
494 2v26_A Myosin VI; calmodulin-b 22.9 38 0.0013 42.3 3.0 36 155-191 121-157 (784)
495 1kd8_A GABH AIV, GCN4 acid bas 22.7 1.1E+02 0.0039 22.7 4.2 32 810-841 4-35 (36)
496 2v6i_A RNA helicase; membrane, 22.7 28 0.00097 40.0 1.7 16 176-191 4-19 (431)
497 2ehv_A Hypothetical protein PH 22.7 22 0.00075 36.8 0.7 17 176-192 32-48 (251)
498 2gza_A Type IV secretion syste 22.6 21 0.00071 40.2 0.5 21 169-191 172-192 (361)
499 2oxj_A Hybrid alpha/beta pepti 22.6 1.5E+02 0.0052 21.8 4.7 29 704-732 3-31 (34)
500 3ky9_A Proto-oncogene VAV; cal 22.6 21 0.0007 43.0 0.5 64 1019-1088 496-564 (587)
No 1
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=2.7e-88 Score=773.98 Aligned_cols=343 Identities=41% Similarity=0.634 Sum_probs=292.8
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCeEEEeeCC----CEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcC
Q 001340 97 RSGDSISVTIRFRPLSEREFQRGDEIAWYADG----DKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEG 172 (1096)
Q Consensus 97 ~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~----~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G 172 (1096)
...++|+|+|||||+++.|...+...++..++ ..+... .+.|.||+||+++++|++||+.++.|+|+++|+|
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~----~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G 83 (365)
T 2y65_A 8 PAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIA----GKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAG 83 (365)
T ss_dssp CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEET----TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTT
T ss_pred CCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEEC----CEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCC
Confidence 35789999999999999998877665544332 344332 4689999999999999999999999999999999
Q ss_pred CceeEEeeccCCCCcccccCCCCC---CCCchHHHHHHHHHHhhcC-CCCeeEEEEeeeeeecceeeecCCCCCCcceEe
Q 001340 173 VNGTVFAYGVTSSGKTHTMHGDQN---SPGIIPLAIKDVFSIIQDT-PGREFLLRVSYLEIYNEVINDLLDPTGQNLRVR 248 (1096)
Q Consensus 173 ~N~tIfaYGqTgSGKT~Tm~G~~~---~~GIipr~~~~LF~~i~~~-~~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~ir 248 (1096)
||+||||||||||||||||+|+.. .+|||||++++||+.|... .+..|.|+|||+|||||+|+|||++....+.|+
T Consensus 84 ~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~ 163 (365)
T 2y65_A 84 YNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVH 163 (365)
T ss_dssp CCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCCSBCEE
T ss_pred CceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCcCCceEE
Confidence 999999999999999999999754 5699999999999999764 456899999999999999999999988899999
Q ss_pred eCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEEecCC
Q 001340 249 EDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAG 327 (1096)
Q Consensus 249 e~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAG 327 (1096)
+++ .|++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|.+..... .....|+|+||||||
T Consensus 164 e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~skL~lVDLAG 241 (365)
T 2y65_A 164 EDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLEN--QKKLSGKLYLVDLAG 241 (365)
T ss_dssp ECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTT--CCEEEEEEEEEECCC
T ss_pred ECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCC--CCEeEEEEEEEECCC
Confidence 998 57899999999999999999999999999999999999999999999999999876433 346789999999999
Q ss_pred CCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHHH
Q 001340 328 SES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETH 406 (1096)
Q Consensus 328 SEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ETl 406 (1096)
||| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+|||||||+..+++||+
T Consensus 242 SEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl 321 (365)
T 2y65_A 242 SEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETK 321 (365)
T ss_dssp CCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGHHHHH
T ss_pred CCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCHHHHH
Confidence 999 5689999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHH
Q 001340 407 NTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLK 445 (1096)
Q Consensus 407 sTLrfa~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk 445 (1096)
+||+||+|||+|+|.|.+|+..+.+.++++|++|+..|+
T Consensus 322 ~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~~ 360 (365)
T 2y65_A 322 STLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNA 360 (365)
T ss_dssp HHHHHHHHHTTCEEECCCEEECCSHHHHHC---------
T ss_pred HHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888888888988887665
No 2
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=1.3e-87 Score=768.74 Aligned_cols=342 Identities=34% Similarity=0.537 Sum_probs=304.9
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCeEEEeeCCC-EEEec-CCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCc
Q 001340 97 RSGDSISVTIRFRPLSEREFQRGDEIAWYADGD-KIVRN-EYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN 174 (1096)
Q Consensus 97 ~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~-~~~~~-~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N 174 (1096)
+.+++|+|+|||||+++.|...+..+.+..++. ++... .....+.|.||+||+++++|++||+. +.|+|+++|+|||
T Consensus 2 e~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n 80 (369)
T 3cob_A 2 DMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYN 80 (369)
T ss_dssp --CCBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEEECTTSCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCE
T ss_pred CCCCCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEecCCCCCceEEecCEEECCCCCcceehhh-hhhhhHhhhcCCc
Confidence 457899999999999999987776555554444 33322 22344789999999999999999998 6899999999999
Q ss_pred eeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcCCC-CeeEEEEeeeeeecceeeecCCCCC---CcceEeeC
Q 001340 175 GTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPG-REFLLRVSYLEIYNEVINDLLDPTG---QNLRVRED 250 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~~-~~~~v~vS~lEIYnE~i~DLL~~~~---~~l~ire~ 250 (1096)
+||||||||||||||||+|++.++|||||++++||..+..... ..|.|+|||+|||||+|+|||+|.. ..+.|+++
T Consensus 81 ~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~e~ 160 (369)
T 3cob_A 81 VCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKD 160 (369)
T ss_dssp EEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEEEC
T ss_pred eEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCcceEEEEC
Confidence 9999999999999999999999999999999999999987655 5899999999999999999999753 57999999
Q ss_pred C-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEEecCCCC
Q 001340 251 A-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSE 329 (1096)
Q Consensus 251 ~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSE 329 (1096)
+ .|++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|++..... .....|+|+||||||||
T Consensus 161 ~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~skL~lVDLAGSE 238 (369)
T 3cob_A 161 SKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQT--QAIARGKLSFVDLAGSE 238 (369)
T ss_dssp TTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTT--CCEEEEEEEEEECCCSS
T ss_pred CCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCC--CcEEEEEEEEEeCCCCC
Confidence 8 57899999999999999999999999999999999999999999999999999876543 45678999999999999
Q ss_pred C-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHHHHH
Q 001340 330 S-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNT 408 (1096)
Q Consensus 330 r-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ETlsT 408 (1096)
| .++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+|||||||+..+++||++|
T Consensus 239 r~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~T 317 (369)
T 3cob_A 239 RVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNS 317 (369)
T ss_dssp CCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTC-SCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHH
T ss_pred cccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCC-CcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHH
Confidence 9 5689999999999999999999999999999875 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 409 LKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLK 452 (1096)
Q Consensus 409 Lrfa~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~~~ 452 (1096)
|+||+|||+|+|.|.+|... +||..||.+|..++
T Consensus 318 LrfA~rak~i~~~~~~n~~~----------~ei~~L~~~l~~~~ 351 (369)
T 3cob_A 318 LTYASRVRSIVNDPSKNVSS----------KEVARLKKLVSYWK 351 (369)
T ss_dssp HHHHHHHHTCBCCCCCCEEC----------HHHHHHHHHTTCC-
T ss_pred HHHHHHHhhcccCCcccCCH----------HHHHHHHHHHHHHH
Confidence 99999999999999999864 45555666655444
No 3
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=2.8e-87 Score=765.80 Aligned_cols=342 Identities=39% Similarity=0.611 Sum_probs=287.4
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeEEEe--eCCCEEEecCC-----CCCcceecceecCCCCChhHHHhhhhHHHHHH
Q 001340 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWY--ADGDKIVRNEY-----NPATAYAFDRVFGPHANSQEVYDVAARPVVKA 168 (1096)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~--~~~~~~~~~~~-----~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~ 168 (1096)
....++|+|+|||||+++.|...+...++. .+...+.+... ...+.|.||+||+++++|++||+.+++|+|++
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~ 96 (372)
T 3b6u_A 17 QGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDS 96 (372)
T ss_dssp ----CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHH
T ss_pred CCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHH
Confidence 456789999999999999998777654443 33445544332 23568999999999999999999999999999
Q ss_pred HhcCCceeEEeeccCCCCcccccCCCCC---CCCchHHHHHHHHHHhhcCCCCeeEEEEeeeeeecceeeecCCCCC-Cc
Q 001340 169 AMEGVNGTVFAYGVTSSGKTHTMHGDQN---SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG-QN 244 (1096)
Q Consensus 169 ~l~G~N~tIfaYGqTgSGKT~Tm~G~~~---~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~~-~~ 244 (1096)
+|+|||+||||||||||||||||+|... .+|||||++++||..|...++..|.|+|||+|||||+|+|||++.. ..
T Consensus 97 ~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 176 (372)
T 3b6u_A 97 VLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKR 176 (372)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCTTCC
T ss_pred HhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCCCCC
Confidence 9999999999999999999999999754 5699999999999999988888999999999999999999999864 67
Q ss_pred ceEeeCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCC-CCCcEEEeEeEE
Q 001340 245 LRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-EYDGVIFSQLNL 322 (1096)
Q Consensus 245 l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~-~~~~~~~skL~l 322 (1096)
+.|++++ .|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|+....+. ....+..|+|+|
T Consensus 177 l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~skL~l 256 (372)
T 3b6u_A 177 LELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNL 256 (372)
T ss_dssp BCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEEEEEEE
T ss_pred ceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEEEEEEE
Confidence 9999998 57899999999999999999999999999999999999999999999999999876432 234567899999
Q ss_pred EecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCC
Q 001340 323 IDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSS 401 (1096)
Q Consensus 323 VDLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~ 401 (1096)
|||||||| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+|||||||+..+
T Consensus 257 VDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~ 336 (372)
T 3b6u_A 257 VDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYN 336 (372)
T ss_dssp EECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGG
T ss_pred EECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcccC
Confidence 99999999 56899999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccccccccCHHHHHHHHH
Q 001340 402 MEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQ 438 (1096)
Q Consensus 402 ~~ETlsTLrfa~rak~I~~~~~~n~~~~~~~~i~~~~ 438 (1096)
++||++||+||+|||+|+|+|.+|+... ..++++|+
T Consensus 337 ~~ETlsTLrfA~rak~I~n~~~~n~~~~-~~~~~~~~ 372 (372)
T 3b6u_A 337 VEETLTTLRYANRAKNIKNKPRVNEDPK-DALLREFQ 372 (372)
T ss_dssp HHHHHHHHHHHHHHTTCBCCCCCCC------------
T ss_pred HHHHHHHHHHHHHHhhccccceecCChH-HHHHHhcC
Confidence 9999999999999999999999998543 34666553
No 4
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=6.6e-87 Score=758.63 Aligned_cols=329 Identities=39% Similarity=0.620 Sum_probs=273.0
Q ss_pred CCCEEEEEEeCCCChhhhhcCCeEEEe--eCCCEEEecC----------CCCCcceecceecCCCCChhHHHhhhhHHHH
Q 001340 99 GDSISVTIRFRPLSEREFQRGDEIAWY--ADGDKIVRNE----------YNPATAYAFDRVFGPHANSQEVYDVAARPVV 166 (1096)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~~~~~--~~~~~~~~~~----------~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV 166 (1096)
.++|+|+||+||++++|...+...++. .+...+.+.. ....+.|.||+||+++++|++||+.++.|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 579999999999999998777654433 3344444432 1235689999999999999999999999999
Q ss_pred HHHhcCCceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhc-CCCCeeEEEEeeeeeecceeeecCCCCCCcc
Q 001340 167 KAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD-TPGREFLLRVSYLEIYNEVINDLLDPTGQNL 245 (1096)
Q Consensus 167 ~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~-~~~~~~~v~vS~lEIYnE~i~DLL~~~~~~l 245 (1096)
+++|+|||+||||||||||||||||+|+..++|||||++++||+.|.. .++..|.|+|||+|||||+|+|||++ ...+
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~-~~~l 161 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKN-NTKL 161 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTT-EEEE
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccC-CcCc
Confidence 999999999999999999999999999999999999999999999984 45679999999999999999999984 4579
Q ss_pred eEeeCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEEe
Q 001340 246 RVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLID 324 (1096)
Q Consensus 246 ~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVD 324 (1096)
.|++++ .|+||.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|++............|+|+|||
T Consensus 162 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~skl~lVD 241 (350)
T 2vvg_A 162 PLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVD 241 (350)
T ss_dssp CEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CEEEEEEEEEEE
T ss_pred eeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCccEEEEEEEEEe
Confidence 999998 6789999999999999999999999999999999999999999999999999987665544557789999999
Q ss_pred cCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHH
Q 001340 325 LAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSME 403 (1096)
Q Consensus 325 LAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ 403 (1096)
|||||| .++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+|||||||+..+++
T Consensus 242 LAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ 320 (350)
T 2vvg_A 242 LAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA-THIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYD 320 (350)
T ss_dssp CCCCCC---------------CTTHHHHHHHHHHHHHHHTC-SSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHH
T ss_pred CCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCC-CCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccHH
Confidence 999999 6789999999999999999999999999999976 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccccccccC
Q 001340 404 ETHNTLKFASRAKRVEIYASRNKIID 429 (1096)
Q Consensus 404 ETlsTLrfa~rak~I~~~~~~n~~~~ 429 (1096)
||++||+||+|||+|+|+|.+|+..+
T Consensus 321 ETl~TL~fA~rak~i~n~~~~n~~~~ 346 (350)
T 2vvg_A 321 ETMSTLRYADRAKQIKNKPRINEDPK 346 (350)
T ss_dssp HHHHHHHHHHHHTTCBCCCCCCBSCT
T ss_pred HHHHHHHHHHHHhhccccceecCCch
Confidence 99999999999999999999998544
No 5
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-87 Score=768.07 Aligned_cols=347 Identities=34% Similarity=0.523 Sum_probs=256.6
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeE-EEeeCCCEEEecC---CCCCcceecceecCCCCChhHHHhhhhHHHHHHHhc
Q 001340 96 QRSGDSISVTIRFRPLSEREFQRGDEI-AWYADGDKIVRNE---YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAME 171 (1096)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~-~~~~~~~~~~~~~---~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~ 171 (1096)
....++|+|+|||||+++.|...+... +...++..+.+.. ......|.||+||+++++|++||+.++.|+|+++|+
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~ 96 (388)
T 3bfn_A 17 QGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLE 96 (388)
T ss_dssp SSCCCCCEEEEEECCCC-----------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHTT
T ss_pred cCCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhhc
Confidence 455789999999999999997654433 3334444443221 123467999999999999999999999999999999
Q ss_pred CCceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhc----CCCCeeEEEEeeeeeecceeeecCCCCCCcceE
Q 001340 172 GVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD----TPGREFLLRVSYLEIYNEVINDLLDPTGQNLRV 247 (1096)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~----~~~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~i 247 (1096)
|||+||||||||||||||||+|+++++|||||++.+||..+.. .....|.|+|||+|||||+|+|||+|....+.|
T Consensus 97 G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~l~i 176 (388)
T 3bfn_A 97 GQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVI 176 (388)
T ss_dssp TCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSCBCCC
T ss_pred CceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCCCCceE
Confidence 9999999999999999999999999999999999999999975 234689999999999999999999999889999
Q ss_pred eeCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEEecC
Q 001340 248 REDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLA 326 (1096)
Q Consensus 248 re~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLA 326 (1096)
++|+ .|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|++...... .....|+|+|||||
T Consensus 177 red~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~-~~~~~skL~lVDLA 255 (388)
T 3bfn_A 177 REDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAP-FRQREGKLYLIDLA 255 (388)
T ss_dssp EECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTT-CCEEEEEEEEEECC
T ss_pred EEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCC-CceeEEEEEEEECC
Confidence 9998 578999999999999999999999999999999999999999999999999998764432 33578999999999
Q ss_pred CCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHH
Q 001340 327 GSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEET 405 (1096)
Q Consensus 327 GSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ET 405 (1096)
|||| .++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+|||||||+..+++||
T Consensus 256 GSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~-~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~~ET 334 (388)
T 3bfn_A 256 GSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL-PRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDT 334 (388)
T ss_dssp CTTC--------------CCCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGHHHH
T ss_pred CCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCC-CCCcCcccHHHHHHHHhhCCCccEEEEEEECCccccHHHH
Confidence 9999 5689999999999999999999999999999876 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHH
Q 001340 406 HNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELD 449 (1096)
Q Consensus 406 lsTLrfa~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~ 449 (1096)
++||+||+|||+|+|+|.+|+..+...+. ++..++++|.
T Consensus 335 lsTLrfA~rak~I~n~p~~n~~~~~~~l~-----~~k~~~~~l~ 373 (388)
T 3bfn_A 335 VSALNFAARSKEVINRPFTNESLQPHALG-----PVKLSQKELL 373 (388)
T ss_dssp HHHHHHHCSEEEEC------------------------------
T ss_pred HHHHHHHHHHhhCcCcCcccCCCCHHHHH-----HHHHHHHHhh
Confidence 99999999999999999999987776442 3344445554
No 6
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=1.5e-86 Score=757.76 Aligned_cols=332 Identities=40% Similarity=0.616 Sum_probs=304.3
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCeEEEe-eCCCEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCcee
Q 001340 98 SGDSISVTIRFRPLSEREFQRGDEIAWY-ADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGT 176 (1096)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~~~~~~-~~~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~t 176 (1096)
..++|+|+|||||+++.|...+...++. .++.++..........|.||+||+++++|++||+.++.|+|+++|+|||+|
T Consensus 4 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~t 83 (355)
T 1goj_A 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGT 83 (355)
T ss_dssp SSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEE
T ss_pred CCCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcce
Confidence 4689999999999999998777654444 444555555445567899999999999999999999999999999999999
Q ss_pred EEeeccCCCCcccccCCC----CCCCCchHHHHHHHHHHhhcCC-CCeeEEEEeeeeeecceeeecCCCCCCcceEeeCC
Q 001340 177 VFAYGVTSSGKTHTMHGD----QNSPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA 251 (1096)
Q Consensus 177 IfaYGqTgSGKT~Tm~G~----~~~~GIipr~~~~LF~~i~~~~-~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~ire~~ 251 (1096)
|||||||||||||||+|+ +.++|||||++++||..|.... +..|.|+|||+|||||+|+|||+|....+.|++++
T Consensus 84 ifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e~~ 163 (355)
T 1goj_A 84 VFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEK 163 (355)
T ss_dssp EEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCSCCEEEET
T ss_pred EEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccCCceeEEcC
Confidence 999999999999999996 4668999999999999997654 56899999999999999999999998899999998
Q ss_pred -CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEEecCCCCC
Q 001340 252 -QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES 330 (1096)
Q Consensus 252 -~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr 330 (1096)
.|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|.+..... +....|+|+|||||||||
T Consensus 164 ~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~skL~lVDLAGSEr 241 (355)
T 1goj_A 164 NRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVET--GSAKSGQLFLVDLAGSEK 241 (355)
T ss_dssp TTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTT--TEEEEEEEEEEECCCCSC
T ss_pred CCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCC--CceeeeEEEEEECCCCCc
Confidence 67999999999999999999999999999999999999999999999999999876433 456789999999999999
Q ss_pred -cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHHHHHH
Q 001340 331 -SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTL 409 (1096)
Q Consensus 331 -~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ETlsTL 409 (1096)
.++++.|.+++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+|||||||+..+++||++||
T Consensus 242 ~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ETl~TL 321 (355)
T 1goj_A 242 VGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTL 321 (355)
T ss_dssp CTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHHHH
T ss_pred ccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHHHHHH
Confidence 5689999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccccccccCHH
Q 001340 410 KFASRAKRVEIYASRNKIIDEK 431 (1096)
Q Consensus 410 rfa~rak~I~~~~~~n~~~~~~ 431 (1096)
+||+|||+|+|+|.+|+..+..
T Consensus 322 ~fA~rak~I~n~~~vn~~~~~~ 343 (355)
T 1goj_A 322 RFGMRAKSIKNKAKVNAELSPA 343 (355)
T ss_dssp HHHHHHHTCBCCCCCCSSSSCS
T ss_pred HHHHHHhhccCCceeCCCCCHH
Confidence 9999999999999999876653
No 7
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=6.2e-87 Score=759.26 Aligned_cols=328 Identities=46% Similarity=0.762 Sum_probs=291.8
Q ss_pred CCCEEEEEEeCCCChhhhhcCCe--EEEeeCCCEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCcee
Q 001340 99 GDSISVTIRFRPLSEREFQRGDE--IAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGT 176 (1096)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~--~~~~~~~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~t 176 (1096)
.++|+|+|||||++.+|...+.. +.|..++..+... ...+.|.||+||+++++|++||+.++.|+|+++|+|||+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~--~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~t 80 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV--DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGT 80 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEET--TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEE
T ss_pred CCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEEC--CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccc
Confidence 68999999999999999765543 4455666666543 3457899999999999999999999999999999999999
Q ss_pred EEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcCCCCeeEEEEeeeeeecceeeecCCCCC--CcceEeeCC-CC
Q 001340 177 VFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG--QNLRVREDA-QG 253 (1096)
Q Consensus 177 IfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~~--~~l~ire~~-~g 253 (1096)
|||||||||||||||+|+++++|||||++++||..|+..++..|.|+|||+|||||+|+|||++.. .++.|++++ .|
T Consensus 81 ifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ed~~~~ 160 (349)
T 1t5c_A 81 IFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRN 160 (349)
T ss_dssp EEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEEEETTTTE
T ss_pred eeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceEEECCCCC
Confidence 999999999999999999999999999999999999998889999999999999999999998753 679999998 57
Q ss_pred cEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCC---CCcEEEeEeEEEecCCCCC
Q 001340 254 TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDE---YDGVIFSQLNLIDLAGSES 330 (1096)
Q Consensus 254 ~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~---~~~~~~skL~lVDLAGSEr 330 (1096)
+||.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|++...+.. .+....|+|+|||||||||
T Consensus 161 ~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVDLAGSEr 240 (349)
T 1t5c_A 161 VYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSER 240 (349)
T ss_dssp EEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEECCCGGG
T ss_pred EEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEECCCCcc
Confidence 8999999999999999999999999999999999999999999999999998765432 2356789999999999999
Q ss_pred -cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCC-CCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHHHHH
Q 001340 331 -SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGK-ASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNT 408 (1096)
Q Consensus 331 -~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k-~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ETlsT 408 (1096)
.++++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||||||||+|||||+|+|||||+|+ +++||++|
T Consensus 241 ~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~~ETlsT 318 (349)
T 1t5c_A 241 AAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTA 318 (349)
T ss_dssp TC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CSHHHHHH
T ss_pred ccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CHHHHHHH
Confidence 5689999999999999999999999999999875 3699999999999999999999999999999996 58999999
Q ss_pred HHHHHHhcccccccccccccCH
Q 001340 409 LKFASRAKRVEIYASRNKIIDE 430 (1096)
Q Consensus 409 Lrfa~rak~I~~~~~~n~~~~~ 430 (1096)
|+||+|||+|+|.|.+|+..+.
T Consensus 319 L~fA~rak~I~n~~~vn~~~~~ 340 (349)
T 1t5c_A 319 LQFASTAKYMKNTPYVNEVSTD 340 (349)
T ss_dssp HHHHHHHTTCCCCCCCCEEC--
T ss_pred HHHHHHHhhcccCceeccCCCC
Confidence 9999999999999999997654
No 8
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=1.9e-86 Score=775.36 Aligned_cols=330 Identities=38% Similarity=0.610 Sum_probs=279.0
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeEEEeeCCC--EEEecC----------------CCCCcceecceecCCC------
Q 001340 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADGD--KIVRNE----------------YNPATAYAFDRVFGPH------ 151 (1096)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~--~~~~~~----------------~~~~~~f~FD~VF~~~------ 151 (1096)
.+.+++|+|+|||||++++|...+..+++..++. .+.+.. ....+.|.||+|||++
T Consensus 34 ~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~ 113 (443)
T 2owm_A 34 KDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEH 113 (443)
T ss_dssp CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTT
T ss_pred CCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCcc
Confidence 4567899999999999999988877666655432 222111 1135689999999864
Q ss_pred -CChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcC----CCCeeEEEEee
Q 001340 152 -ANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT----PGREFLLRVSY 226 (1096)
Q Consensus 152 -~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~----~~~~~~v~vS~ 226 (1096)
++|++||+.++.|+|+++|+|||+||||||||||||||||+|+++++|||||++++||..|... ++..|.|+|||
T Consensus 114 ~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~ 193 (443)
T 2owm_A 114 YATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSY 193 (443)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEE
T ss_pred CCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999754 46799999999
Q ss_pred eeeecceeeecCCCC-----CCcceEeeCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEE
Q 001340 227 LEIYNEVINDLLDPT-----GQNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFT 300 (1096)
Q Consensus 227 lEIYnE~i~DLL~~~-----~~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~ 300 (1096)
+|||||+|+|||+|. ...|.|++++ .|+||.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+
T Consensus 194 lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ift 273 (443)
T 2owm_A 194 FEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFT 273 (443)
T ss_dssp EEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEE
T ss_pred EEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEE
Confidence 999999999999873 2359999998 6899999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCC--CCCCcEEEeEeEEEecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCC------------
Q 001340 301 LMIESSDHG--DEYDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKA------------ 365 (1096)
Q Consensus 301 i~v~~~~~~--~~~~~~~~skL~lVDLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~------------ 365 (1096)
|.|++.... ........|+|+||||||||| .+++++|.|++|+.+||+||++||+||.+|++++.
T Consensus 274 i~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g 353 (443)
T 2owm_A 274 IMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSG 353 (443)
T ss_dssp EEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC---------------
T ss_pred EEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccccccccc
Confidence 999886432 222346789999999999999 56899999999999999999999999999987542
Q ss_pred ---------CCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHHHHHHHHHHHhcccccccccccc
Q 001340 366 ---------SHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKI 427 (1096)
Q Consensus 366 ---------~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ETlsTLrfa~rak~I~~~~~~n~~ 427 (1096)
.|||||||||||||||+|||||+|+|||||||+ +++||++||+||+|||+|+|+|.+|++
T Consensus 354 ~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~ 422 (443)
T 2owm_A 354 RGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQV 422 (443)
T ss_dssp ----------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC
T ss_pred cccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceeccc
Confidence 399999999999999999999999999999996 599999999999999999999999984
No 9
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=1.3e-85 Score=753.56 Aligned_cols=329 Identities=39% Similarity=0.612 Sum_probs=280.2
Q ss_pred CCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCC----CCCcceecceecCCC--------CChhHHHhhhhHHHH
Q 001340 99 GDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEY----NPATAYAFDRVFGPH--------ANSQEVYDVAARPVV 166 (1096)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~----~~~~~f~FD~VF~~~--------~~q~~Vy~~~~~plV 166 (1096)
.++|+|+|||||++.+|...+..+++..++..+.+... ...+.|.||+||+++ ++|++||+.+++|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv 82 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEML 82 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHHH
Confidence 46899999999999999888777777766666554322 135689999999987 899999999999999
Q ss_pred HHHhcCCceeEEeeccCCCCcccccCCCC--CCCCchHHHHHHHHHHhhcCC--CCeeEEEEeeeeeecceeeecCCCCC
Q 001340 167 KAAMEGVNGTVFAYGVTSSGKTHTMHGDQ--NSPGIIPLAIKDVFSIIQDTP--GREFLLRVSYLEIYNEVINDLLDPTG 242 (1096)
Q Consensus 167 ~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~--~~~GIipr~~~~LF~~i~~~~--~~~~~v~vS~lEIYnE~i~DLL~~~~ 242 (1096)
+++|+|||+||||||||||||||||+|+. .++|||||++++||..|.... +..|.|+|||+|||||+|+|||+|..
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 162 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKN 162 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTT
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcccccc
Confidence 99999999999999999999999999984 578999999999999998653 46899999999999999999999864
Q ss_pred -CcceEeeCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCC--CcEEEe
Q 001340 243 -QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEY--DGVIFS 318 (1096)
Q Consensus 243 -~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~--~~~~~s 318 (1096)
..+.|++++ .|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|++....... .....|
T Consensus 163 ~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s 242 (366)
T 2zfi_A 163 KGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS 242 (366)
T ss_dssp CSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEEE
T ss_pred CCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCccceeEe
Confidence 579999998 6899999999999999999999999999999999999999999999999999876543322 345689
Q ss_pred EeEEEecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcC-----------CCCCcCCCCCccchhhccCCCCC
Q 001340 319 QLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG-----------KASHVPYRDSKLTRLLQSSLSGH 386 (1096)
Q Consensus 319 kL~lVDLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~-----------k~~hiPyRdSkLTrLLqdsLgGn 386 (1096)
+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++ +..|||||||||||||||+||||
T Consensus 243 kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGn 322 (366)
T 2zfi_A 243 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGN 322 (366)
T ss_dssp EEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTT
T ss_pred EEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhCCC
Confidence 999999999999 568899999999999999999999999999863 35699999999999999999999
Q ss_pred ccceeEEeeCCCCCCHHHHHHHHHHHHHhcccccccccccc
Q 001340 387 GHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKI 427 (1096)
Q Consensus 387 skt~~I~~Isp~~~~~~ETlsTLrfa~rak~I~~~~~~n~~ 427 (1096)
|+|+|||||||+..+++||++||+||+|||+|+|.|.++..
T Consensus 323 skt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~~ 363 (366)
T 2zfi_A 323 SRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNHH 363 (366)
T ss_dssp CEEEEEEEECCBGGGHHHHHHHHHHHHHTC-----------
T ss_pred ceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCCC
Confidence 99999999999999999999999999999999999988753
No 10
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=2.6e-85 Score=739.90 Aligned_cols=315 Identities=44% Similarity=0.690 Sum_probs=289.0
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCeEEE-eeCCCEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCce
Q 001340 97 RSGDSISVTIRFRPLSEREFQRGDEIAW-YADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNG 175 (1096)
Q Consensus 97 ~~~~~I~V~vRvRP~~~~E~~~~~~~~~-~~~~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~ 175 (1096)
..+++|+|+|||||++++|...+...++ ..++.++... .+.|.||+||+++++|++||+.+++|+|+++|+|||+
T Consensus 4 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~----~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~ 79 (325)
T 1bg2_A 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA----SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNG 79 (325)
T ss_dssp CSSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEET----TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCE
T ss_pred CCCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEEC----CEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeE
Confidence 3478999999999999999877765443 3445555543 4689999999999999999999999999999999999
Q ss_pred eEEeeccCCCCcccccCCCCCC---CCchHHHHHHHHHHhhc-CCCCeeEEEEeeeeeecceeeecCCCCCCcceEeeCC
Q 001340 176 TVFAYGVTSSGKTHTMHGDQNS---PGIIPLAIKDVFSIIQD-TPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA 251 (1096)
Q Consensus 176 tIfaYGqTgSGKT~Tm~G~~~~---~GIipr~~~~LF~~i~~-~~~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~ire~~ 251 (1096)
||||||||||||||||+|+..+ +|||||++++||+.|.. .++..|.|+|||+|||||+|+|||++....+.|++++
T Consensus 80 tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l~i~e~~ 159 (325)
T 1bg2_A 80 TIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDK 159 (325)
T ss_dssp EEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCSBCEEECT
T ss_pred EEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCCCceEEECC
Confidence 9999999999999999997544 59999999999999975 4567999999999999999999999988999999998
Q ss_pred -CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEEecCCCCC
Q 001340 252 -QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES 330 (1096)
Q Consensus 252 -~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr 330 (1096)
.|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|.+..... .....|+|+|||||||||
T Consensus 160 ~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~skl~lVDLAGSEr 237 (325)
T 1bg2_A 160 NRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT--EQKLSGKLYLVDLAGSEK 237 (325)
T ss_dssp TSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTT--CCEEEEEEEEEECCCSCC
T ss_pred CCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCC--CcEEEEEEEEEECCCCCc
Confidence 57899999999999999999999999999999999999999999999999999876543 346789999999999999
Q ss_pred -cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHHHHHH
Q 001340 331 -SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTL 409 (1096)
Q Consensus 331 -~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ETlsTL 409 (1096)
.++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+|||||||+..+++||++||
T Consensus 238 ~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ETl~TL 316 (325)
T 1bg2_A 238 VSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTL 316 (325)
T ss_dssp CCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHHHH
T ss_pred ccccCCccccchHHHHHHHHHHHHHHHHHHHHcCC-CCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHHHHHH
Confidence 6789999999999999999999999999999874 69999999999999999999999999999999999999999999
Q ss_pred HHHHHhccc
Q 001340 410 KFASRAKRV 418 (1096)
Q Consensus 410 rfa~rak~I 418 (1096)
+||+|||+|
T Consensus 317 ~fa~rak~I 325 (325)
T 1bg2_A 317 LFGQRAKTI 325 (325)
T ss_dssp HHHHTSCCC
T ss_pred HHHHHhccC
Confidence 999999987
No 11
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=3.8e-85 Score=746.80 Aligned_cols=322 Identities=37% Similarity=0.593 Sum_probs=259.5
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeEEEe-eCCCEEEecC---------------------CCCCcceecceecCCCCC
Q 001340 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWY-ADGDKIVRNE---------------------YNPATAYAFDRVFGPHAN 153 (1096)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~-~~~~~~~~~~---------------------~~~~~~f~FD~VF~~~~~ 153 (1096)
.+..++|+|+|||||++.+|...+...++. .++..++... ..+...|.||+||+++++
T Consensus 6 ~d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~ 85 (355)
T 3lre_A 6 EDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETST 85 (355)
T ss_dssp ------CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCC
T ss_pred hhccCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCC
Confidence 456789999999999999998877654443 3333333211 113457999999999999
Q ss_pred hhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcCC-CCeeEEEEeeeeeecc
Q 001340 154 SQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNE 232 (1096)
Q Consensus 154 q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~-~~~~~v~vS~lEIYnE 232 (1096)
|++||+.++.|+|+++|+|||+||||||||||||||||+|++.++|||||++.+||..+.... ...|.|+|||+|||||
T Consensus 86 Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYnE 165 (355)
T 3lre_A 86 QSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNE 165 (355)
T ss_dssp HHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEETT
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999999998754 4689999999999999
Q ss_pred eeeecCCCCCCcceEeeCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCC
Q 001340 233 VINDLLDPTGQNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDE 311 (1096)
Q Consensus 233 ~i~DLL~~~~~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~ 311 (1096)
+|+|||++. .++.|++++ .|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|++......
T Consensus 166 ~i~DLL~~~-~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~ 244 (355)
T 3lre_A 166 QIRDLLVNS-GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTAS 244 (355)
T ss_dssp EEEESSSCC-CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSC
T ss_pred EEEECcCCC-CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCC
Confidence 999999875 479999998 689999999999999999999999999999999999999999999999999998764332
Q ss_pred -CCcEEEeEeEEEecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCC--CCCcCCCCCccchhhccCCCCCc
Q 001340 312 -YDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGK--ASHVPYRDSKLTRLLQSSLSGHG 387 (1096)
Q Consensus 312 -~~~~~~skL~lVDLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k--~~hiPyRdSkLTrLLqdsLgGns 387 (1096)
...+..|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||||||||+|||||
T Consensus 245 ~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGns 324 (355)
T 3lre_A 245 INQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNC 324 (355)
T ss_dssp TTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTTS
T ss_pred CCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCCc
Confidence 2345679999999999999 6789999999999999999999999999999854 46999999999999999999999
Q ss_pred cceeEEeeCCCCCCHHHHHHHHHHHHHhccc
Q 001340 388 HVSLICTVTPASSSMEETHNTLKFASRAKRV 418 (1096)
Q Consensus 388 kt~~I~~Isp~~~~~~ETlsTLrfa~rak~I 418 (1096)
+|+|||||||+..+++||++||+||+|||+|
T Consensus 325 kt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 325 QTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999987
No 12
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=2.1e-85 Score=749.95 Aligned_cols=328 Identities=37% Similarity=0.600 Sum_probs=275.2
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCeEEEee--CCCEEEecC-----CCCCcceecceecCCCCChhHHHhhhhHHHHHHH
Q 001340 97 RSGDSISVTIRFRPLSEREFQRGDEIAWYA--DGDKIVRNE-----YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1096)
Q Consensus 97 ~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~--~~~~~~~~~-----~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~ 169 (1096)
...++|+|+|||||++..|...+...++.. +...+.+.. ....+.|.||+||+++++|++||+.++.|+|+++
T Consensus 5 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 84 (359)
T 1x88_A 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEV 84 (359)
T ss_dssp ----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHH
Confidence 457899999999999999987766544433 233333211 1234689999999999999999999999999999
Q ss_pred hcCCceeEEeeccCCCCcccccCCCCC-----------CCCchHHHHHHHHHHhhcCCCCeeEEEEeeeeeecceeeecC
Q 001340 170 MEGVNGTVFAYGVTSSGKTHTMHGDQN-----------SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLL 238 (1096)
Q Consensus 170 l~G~N~tIfaYGqTgSGKT~Tm~G~~~-----------~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL 238 (1096)
|+|||+||||||||||||||||+|+.. .+|||||++++||+.+.. .+..|.|+|||+|||||+|+|||
T Consensus 85 l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~-~~~~~~v~vS~~EIYnE~i~DLL 163 (359)
T 1x88_A 85 IMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD-NGTEFSVKVSLLEIYNEELFDLL 163 (359)
T ss_dssp HTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS-SSEEEEEEEEEEEEETTEEEETT
T ss_pred hCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc-cCceEEEEEEEEEEeCceeeehh
Confidence 999999999999999999999999764 369999999999999975 46789999999999999999999
Q ss_pred CCCC---CcceEeeCC---CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCC-C
Q 001340 239 DPTG---QNLRVREDA---QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-E 311 (1096)
Q Consensus 239 ~~~~---~~l~ire~~---~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~-~ 311 (1096)
+|.. ..+.|++++ .|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|+...... +
T Consensus 164 ~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~ 243 (359)
T 1x88_A 164 NPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 243 (359)
T ss_dssp CTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTS
T ss_pred cccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCCC
Confidence 9864 469999997 47899999999999999999999999999999999999999999999999998764322 2
Q ss_pred CCcEEEeEeEEEecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccce
Q 001340 312 YDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVS 390 (1096)
Q Consensus 312 ~~~~~~skL~lVDLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~ 390 (1096)
......|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++. .|||||||||||||||+|||||+|+
T Consensus 244 ~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~ 322 (359)
T 1x88_A 244 EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERT-PHVPYRESKLTRILQDSLGGRTRTS 322 (359)
T ss_dssp CEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTGGGSSSSSEEE
T ss_pred CceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCC-CCCccccchHHHHHHHHhCCCCeEE
Confidence 2345789999999999999 5689999999999999999999999999999864 6999999999999999999999999
Q ss_pred eEEeeCCCCCCHHHHHHHHHHHHHhccccccccccc
Q 001340 391 LICTVTPASSSMEETHNTLKFASRAKRVEIYASRNK 426 (1096)
Q Consensus 391 ~I~~Isp~~~~~~ETlsTLrfa~rak~I~~~~~~n~ 426 (1096)
|||||||+..+++||++||+||+|||+|+|+|.+|+
T Consensus 323 mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 323 IIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp EEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 999999999999999999999999999999999986
No 13
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-84 Score=746.94 Aligned_cols=332 Identities=39% Similarity=0.631 Sum_probs=279.0
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeE-EEeeCCCEEEecC---CCCCcceecceecCCCCChhHHHhhhhHHHHHHHhc
Q 001340 96 QRSGDSISVTIRFRPLSEREFQRGDEI-AWYADGDKIVRNE---YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAME 171 (1096)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~-~~~~~~~~~~~~~---~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~ 171 (1096)
....++|+|+|||||++++|...+... +...++..++... ....+.|.||+||+++++|++||+.++.|+|+++|+
T Consensus 19 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~ 98 (373)
T 2wbe_C 19 KKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLN 98 (373)
T ss_dssp CCCCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHHHHhC
Confidence 355789999999999999997655433 3334445554432 224578999999999999999999999999999999
Q ss_pred CCceeEEeeccCCCCcccccCCCCC-----------CCCchHHHHHHHHHHhhcCCCCeeEEEEeeeeeecceeeecCCC
Q 001340 172 GVNGTVFAYGVTSSGKTHTMHGDQN-----------SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDP 240 (1096)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm~G~~~-----------~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~ 240 (1096)
|||+||||||||||||||||+|+.. ++|||||++++||+.+... +..|.|+|||+|||||+|+|||++
T Consensus 99 G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~v~vS~~EIYnE~i~DLL~~ 177 (373)
T 2wbe_C 99 GYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM-EVEYTMRISYLELYNEELCDLLST 177 (373)
T ss_dssp TCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC-CSCEEEEEEEEEEETTEEEESSCT
T ss_pred CceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc-CceEEEEEEEEEEeCCeEEECCCC
Confidence 9999999999999999999999764 6799999999999999764 468999999999999999999987
Q ss_pred CC-CcceEeeCC---CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCC-CCcE
Q 001340 241 TG-QNLRVREDA---QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDE-YDGV 315 (1096)
Q Consensus 241 ~~-~~l~ire~~---~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~-~~~~ 315 (1096)
.. ..+++++++ .|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|+....+.. ....
T Consensus 178 ~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~ 257 (373)
T 2wbe_C 178 DDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDML 257 (373)
T ss_dssp TSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTCCEE
T ss_pred CCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCCCcce
Confidence 64 568888884 368999999999999999999999999999999999999999999999999998654322 2345
Q ss_pred EEeEeEEEecCCCCC-cccccc-hhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEE
Q 001340 316 IFSQLNLIDLAGSES-SKTETT-GLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLIC 393 (1096)
Q Consensus 316 ~~skL~lVDLAGSEr-~~t~~~-g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~ 393 (1096)
..|+|+||||||||| .++++. |.|++|+.+||+||++||+||.+|+++. .|||||||||||||||+|||||+|+|||
T Consensus 258 ~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa 336 (373)
T 2wbe_C 258 KIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRA-PHVPYRESKLTRLLQESLGGRTKTSIIA 336 (373)
T ss_dssp EEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCS-SCCCGGGCHHHHHTHHHHHSSSEEEEEE
T ss_pred eEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCC-CcCccccchHHHHHHHHhCCCceEEEEE
Confidence 789999999999999 567776 9999999999999999999999999864 6999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHHHHHHhcccccccccccccC
Q 001340 394 TVTPASSSMEETHNTLKFASRAKRVEIYASRNKIID 429 (1096)
Q Consensus 394 ~Isp~~~~~~ETlsTLrfa~rak~I~~~~~~n~~~~ 429 (1096)
||||+..+++||++||+||+|||+|+|+|.+|+...
T Consensus 337 ~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~s 372 (373)
T 2wbe_C 337 TISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKLT 372 (373)
T ss_dssp EECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEECC
T ss_pred EeCCCcccHHHHHHHHHHHHHHhhccccceeccccC
Confidence 999999999999999999999999999999998643
No 14
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=2.4e-84 Score=738.49 Aligned_cols=320 Identities=39% Similarity=0.631 Sum_probs=264.8
Q ss_pred CCCCCCCCEEEEEEeCCCChhhhhcCCeEEE--eeCCCEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhc
Q 001340 94 APQRSGDSISVTIRFRPLSEREFQRGDEIAW--YADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAME 171 (1096)
Q Consensus 94 ~~~~~~~~I~V~vRvRP~~~~E~~~~~~~~~--~~~~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~ 171 (1096)
.|....++|+|+|||||++++|...+...++ .++...+.. ...+.|.||+||+++++|++||+.++.|+|+++|+
T Consensus 5 ~~~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~---~~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~ 81 (344)
T 4a14_A 5 LPGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL---GRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFE 81 (344)
T ss_dssp ----CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEE---TTTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHT
T ss_pred CCCccccceEEEEEecccchHHHhccCeeEEEEcCCCceEEe---cccceEEEEEEEecCcchhHHHHHHHHHHHHHHHh
Confidence 3445678999999999999999876654333 233334443 24578999999999999999999999999999999
Q ss_pred CCceeEEeeccCCCCcccccCCC------CCCCCchHHHHHHHHHHhhcCCCCeeEEEEeeeeeecceeeecCCCC--CC
Q 001340 172 GVNGTVFAYGVTSSGKTHTMHGD------QNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPT--GQ 243 (1096)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm~G~------~~~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~--~~ 243 (1096)
|||+||||||||||||||||+|+ .+++|||||++++||+.++..+...|.|+|||+|||||+|+|||++. ..
T Consensus 82 G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 161 (344)
T 4a14_A 82 GFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASR 161 (344)
T ss_dssp TCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETTSSCCCGG
T ss_pred hcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHHHhccccc
Confidence 99999999999999999999997 46799999999999999998888999999999999999999999864 35
Q ss_pred cceEeeCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCC------CCCcEE
Q 001340 244 NLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD------EYDGVI 316 (1096)
Q Consensus 244 ~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~------~~~~~~ 316 (1096)
.+.|++++ .|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|++..... ....+.
T Consensus 162 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~ 241 (344)
T 4a14_A 162 DIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLL 241 (344)
T ss_dssp GCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------CEE
T ss_pred cceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCcccccee
Confidence 79999998 57899999999999999999999999999999999999999999999999999875321 224567
Q ss_pred EeEeEEEecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcC--CCCCcCCCCCccchhhccCCCCCccceeEE
Q 001340 317 FSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG--KASHVPYRDSKLTRLLQSSLSGHGHVSLIC 393 (1096)
Q Consensus 317 ~skL~lVDLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~--k~~hiPyRdSkLTrLLqdsLgGnskt~~I~ 393 (1096)
.|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++ +..|||||||||||||||+|||||+|+|||
T Consensus 242 ~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~ 321 (344)
T 4a14_A 242 VSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIA 321 (344)
T ss_dssp EEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEEEE
T ss_pred eeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEEEE
Confidence 89999999999999 578999999999999999999999999999975 346999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHHHHHHhc
Q 001340 394 TVTPASSSMEETHNTLKFASRAK 416 (1096)
Q Consensus 394 ~Isp~~~~~~ETlsTLrfa~rak 416 (1096)
||||+..+++||++||+||+|||
T Consensus 322 ~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 322 CVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp EECCBGGGHHHHHHHHHHHHHTC
T ss_pred EeCCCccchhHHhhhhhhhhhcC
Confidence 99999999999999999999997
No 15
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=6.2e-84 Score=736.55 Aligned_cols=318 Identities=40% Similarity=0.631 Sum_probs=263.7
Q ss_pred CEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCC----------CCCcceecceecC--------CCCChhHHHhhhh
Q 001340 101 SISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEY----------NPATAYAFDRVFG--------PHANSQEVYDVAA 162 (1096)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~----------~~~~~f~FD~VF~--------~~~~q~~Vy~~~~ 162 (1096)
+|+|+|||||++++|...+..+++..++..++.... ...+.|.||+||| +.++|++||+.++
T Consensus 2 ~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~ 81 (354)
T 3gbj_A 2 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLG 81 (354)
T ss_dssp CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHHH
T ss_pred CcEEEEECCCCChhhhccCCceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHhh
Confidence 799999999999999888877777777776654321 2356899999994 5678999999999
Q ss_pred HHHHHHHhcCCceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhc--CCCCeeEEEEeeeeeecceeeecCCC
Q 001340 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLDP 240 (1096)
Q Consensus 163 ~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~--~~~~~~~v~vS~lEIYnE~i~DLL~~ 240 (1096)
.|+|+++|+|||+||||||||||||||||+|+.+++|||||++++||..+.. ..+..|.|+|||+|||||+|+|||+|
T Consensus 82 ~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 161 (354)
T 3gbj_A 82 ENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDP 161 (354)
T ss_dssp HHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC-
T ss_pred HHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccCC
Confidence 9999999999999999999999999999999999999999999999999864 34568999999999999999999998
Q ss_pred CC--CcceEeeCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCC--CCCCcE
Q 001340 241 TG--QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHG--DEYDGV 315 (1096)
Q Consensus 241 ~~--~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~--~~~~~~ 315 (1096)
.+ ..+.|++++ .|+||.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|.+.... ......
T Consensus 162 ~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~ 241 (354)
T 3gbj_A 162 KGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGE 241 (354)
T ss_dssp -----CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCEEEE
T ss_pred CCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCCCCe
Confidence 63 579999998 6899999999999999999999999999999999999999999999999999876322 223446
Q ss_pred EEeEeEEEecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhc-----CCCCCcCCCCCccchhhccCCCCCccc
Q 001340 316 IFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSE-----GKASHVPYRDSKLTRLLQSSLSGHGHV 389 (1096)
Q Consensus 316 ~~skL~lVDLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~-----~k~~hiPyRdSkLTrLLqdsLgGnskt 389 (1096)
..|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++ ++..|||||||||||||||+|||||+|
T Consensus 242 ~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt 321 (354)
T 3gbj_A 242 KVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKT 321 (354)
T ss_dssp EEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTCEE
T ss_pred eEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCCeE
Confidence 789999999999999 67899999999999999999999999999986 345799999999999999999999999
Q ss_pred eeEEeeCCCCCCHHHHHHHHHHHHHhccc
Q 001340 390 SLICTVTPASSSMEETHNTLKFASRAKRV 418 (1096)
Q Consensus 390 ~~I~~Isp~~~~~~ETlsTLrfa~rak~I 418 (1096)
+|||||||+..+++||++||+||.||+.-
T Consensus 322 ~mIa~vsP~~~~~~ETlsTLr~a~~~~~~ 350 (354)
T 3gbj_A 322 AMVATVSPAADNYDETLSTLRYADRAKHH 350 (354)
T ss_dssp EEEEEECCBGGGHHHHHHHHHHHHHHC--
T ss_pred EEEEEeCCCcchHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999863
No 16
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-84 Score=738.89 Aligned_cols=319 Identities=35% Similarity=0.560 Sum_probs=261.2
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEec-----------CCCCCcceecceecCCCCChhHHHhhhhHH
Q 001340 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRN-----------EYNPATAYAFDRVFGPHANSQEVYDVAARP 164 (1096)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~-----------~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~p 164 (1096)
...+++|+|+|||||+++.|.. .+.+..++..+.+. .......|.||+||+ +++|++||+.+++|
T Consensus 20 ~~~~~~i~V~vRvRP~~~~e~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~p 95 (359)
T 3nwn_A 20 MGTRKKVHAFVRVKPTDDFAHE---MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKD 95 (359)
T ss_dssp ----CCEEEEEEECCCSSCCTT---TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHH
T ss_pred CCCCCCEEEEEEcCCCCccccc---ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHH
Confidence 3557899999999999876532 22233333333322 122335799999997 58999999999999
Q ss_pred HHHHHhcCCceeEEeeccCCCCcccccCCCCC---CCCchHHHHHHHHHHhhcCCCCeeEEEEeeeeeecceeeecCCCC
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQN---SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPT 241 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~---~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~ 241 (1096)
+|+++|+|||+||||||||||||||||+|+.. ++|||||++++||+.+...++..|.|+|||+|||||+|+|||++.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 175 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTL 175 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSSS
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEeccccccccccc
Confidence 99999999999999999999999999999764 479999999999999999999999999999999999999999853
Q ss_pred ------CCcceEeeCCCCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcE
Q 001340 242 ------GQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGV 315 (1096)
Q Consensus 242 ------~~~l~ire~~~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~ 315 (1096)
...+.+++++.|++|.|++++.|.+++|++.+|..|..+|++++|.||..|||||+||+|+|............
T Consensus 176 ~~~~~~~~~~~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~ 255 (359)
T 3nwn_A 176 PYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKY 255 (359)
T ss_dssp TTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------CC
T ss_pred cccccccccceEEecCCceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecccccCccc
Confidence 34688999999999999999999999999999999999999999999999999999999999887655444556
Q ss_pred EEeEeEEEecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEe
Q 001340 316 IFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICT 394 (1096)
Q Consensus 316 ~~skL~lVDLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~ 394 (1096)
..|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+||||
T Consensus 256 ~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~~ 335 (359)
T 3nwn_A 256 ITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTN 335 (359)
T ss_dssp EEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEE
T ss_pred ccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEEEEE
Confidence 789999999999999 6789999999999999999999999999999988889999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhccc
Q 001340 395 VTPASSSMEETHNTLKFASRAKRV 418 (1096)
Q Consensus 395 Isp~~~~~~ETlsTLrfa~rak~I 418 (1096)
|||+..+++||++||+||+|||+|
T Consensus 336 isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 336 IYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp ECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred eCCchhhHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999987
No 17
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=3.1e-83 Score=724.35 Aligned_cols=318 Identities=37% Similarity=0.553 Sum_probs=272.4
Q ss_pred CCCCEEEEEEeCCCChhhhhcCC---eEEEeeCC-CEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCC
Q 001340 98 SGDSISVTIRFRPLSEREFQRGD---EIAWYADG-DKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGV 173 (1096)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~---~~~~~~~~-~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~ 173 (1096)
.+++|+|+|||||+++.|...+. .+.+..++ ..+..........|.||+||+++++|++||+. +.|+|+++|+||
T Consensus 2 ~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~ 80 (330)
T 2h58_A 2 SKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQE-VQALVTSCIDGF 80 (330)
T ss_dssp ---CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEETTEEEEEECSEEECTTCCHHHHHTT-THHHHHHHHTTC
T ss_pred CCCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCCCCeeEEecCeEeCCCCCcHhHHHH-HHHHHHHHhCCC
Confidence 46899999999999998864322 23343333 33333333345689999999999999999998 489999999999
Q ss_pred ceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcC-CCCeeEEEEeeeeeecceeeecCCCCC-CcceEe--e
Q 001340 174 NGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT-PGREFLLRVSYLEIYNEVINDLLDPTG-QNLRVR--E 249 (1096)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~-~~~~~~v~vS~lEIYnE~i~DLL~~~~-~~l~ir--e 249 (1096)
|+||||||||||||||||+|++.++|||||++++||..++.. ++..|.|+|||+|||||+|+|||++.. ..+.|+ +
T Consensus 81 n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~~~~ 160 (330)
T 2h58_A 81 NVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCP 160 (330)
T ss_dssp CEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCCEECT
T ss_pred EEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccccceEEEee
Confidence 999999999999999999999999999999999999999764 456899999999999999999998753 344444 5
Q ss_pred CC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEEecCCC
Q 001340 250 DA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGS 328 (1096)
Q Consensus 250 ~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGS 328 (1096)
++ .|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|++.+... +....|+|+|||||||
T Consensus 161 ~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~skL~lVDLAGS 238 (330)
T 2h58_A 161 DGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCST--GLRTTGKLNLVDLAGS 238 (330)
T ss_dssp TSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTT--TEEEEEEEEEEECCCC
T ss_pred cCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCC--CcEEEEEEEEEeCCCC
Confidence 65 57899999999999999999999999999999999999999999999999999876433 4567899999999999
Q ss_pred CC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHHHH
Q 001340 329 ES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHN 407 (1096)
Q Consensus 329 Er-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ETls 407 (1096)
|| .++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+|||||||+..+++||++
T Consensus 239 Er~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ETl~ 317 (330)
T 2h58_A 239 ERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQ-GHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLY 317 (330)
T ss_dssp CCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHH
T ss_pred CcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCC-CCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHHHH
Confidence 99 5689999999999999999999999999999864 699999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccc
Q 001340 408 TLKFASRAKRVE 419 (1096)
Q Consensus 408 TLrfa~rak~I~ 419 (1096)
||+||+|||+|+
T Consensus 318 TL~fA~rak~i~ 329 (330)
T 2h58_A 318 SLKFAERVRSVE 329 (330)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHhhCc
Confidence 999999999986
No 18
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=5.4e-84 Score=736.72 Aligned_cols=321 Identities=35% Similarity=0.553 Sum_probs=263.1
Q ss_pred CCCCCCCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCC-----------CCCcceecceecCCCCChhHHHhhhh
Q 001340 94 APQRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEY-----------NPATAYAFDRVFGPHANSQEVYDVAA 162 (1096)
Q Consensus 94 ~~~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~-----------~~~~~f~FD~VF~~~~~q~~Vy~~~~ 162 (1096)
.+.+.+|+|+|+|||||+...+. ..+.+..++..+.+... .....|.||+||+ +++|++||+.++
T Consensus 17 ~~~~~~g~IrV~vRvRP~~~~~~---~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~ 92 (358)
T 2nr8_A 17 RGSGTRKKVHAFVRVKPTDDFAH---EMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVA 92 (358)
T ss_dssp ------CCEEEEEEECCCSSCCT---TTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHT
T ss_pred CCCCCCCCeEEEEEcCCCCCCcc---ceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHH
Confidence 44567899999999999875431 22344445555433211 2235699999995 899999999999
Q ss_pred HHHHHHHhcCCceeEEeeccCCCCcccccCCCCCC---CCchHHHHHHHHHHhhcCCCCeeEEEEeeeeeecceeeecCC
Q 001340 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNS---PGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLD 239 (1096)
Q Consensus 163 ~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~---~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~ 239 (1096)
.|+|+++|+|||+||||||||||||||||+|+..+ +|||||++++||+.|++.++..|.|+|||+|||||+|+|||+
T Consensus 93 ~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~ 172 (358)
T 2nr8_A 93 KDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLS 172 (358)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTS
T ss_pred HHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeeeECcC
Confidence 99999999999999999999999999999998765 899999999999999998888999999999999999999998
Q ss_pred CC------CCcceEeeCCCCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCC
Q 001340 240 PT------GQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYD 313 (1096)
Q Consensus 240 ~~------~~~l~ire~~~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~ 313 (1096)
+. ..++.|++++.|++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|.|+.........
T Consensus 173 ~~~~~~~~~~~l~i~e~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~ 252 (358)
T 2nr8_A 173 TLPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEE 252 (358)
T ss_dssp SSTTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------
T ss_pred CccccCccCCceEEEECCCceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccCCCC
Confidence 63 357999999999999999999999999999999999999999999999999999999999999876544445
Q ss_pred cEEEeEeEEEecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeE
Q 001340 314 GVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLI 392 (1096)
Q Consensus 314 ~~~~skL~lVDLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I 392 (1096)
....|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+||
T Consensus 253 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mI 332 (358)
T 2nr8_A 253 KYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLV 332 (358)
T ss_dssp CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEE
T ss_pred CEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCCeEEEE
Confidence 56789999999999999 57899999999999999999999999999999887899999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhccc
Q 001340 393 CTVTPASSSMEETHNTLKFASRAKRV 418 (1096)
Q Consensus 393 ~~Isp~~~~~~ETlsTLrfa~rak~I 418 (1096)
|||||+..+++||++||+||+|||+|
T Consensus 333 a~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 333 TNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp EEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999986
No 19
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=2.4e-82 Score=722.76 Aligned_cols=320 Identities=33% Similarity=0.506 Sum_probs=260.6
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCeEEEee-C---CC-EEEecCC---CCCcceecceecCCCCChhHHHhhhhHHHHHHH
Q 001340 98 SGDSISVTIRFRPLSEREFQRGDEIAWYA-D---GD-KIVRNEY---NPATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1096)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~~~~~~~-~---~~-~~~~~~~---~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~ 169 (1096)
.+|+|+|+|||||+.+.|...+..+.+.. + +. .+.+... .....|.||+||+++++|++||+.+ .|+|+++
T Consensus 3 lkgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~v-~~lv~~~ 81 (349)
T 3t0q_A 3 LRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEEI-RQLVQSS 81 (349)
T ss_dssp --CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHHH-HHHHHGG
T ss_pred CCCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHHH-HHHHHHH
Confidence 47899999999999999977766555532 1 22 2222211 1245799999999999999999975 6899999
Q ss_pred hcCCceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcC--CCCeeEEEEeeeeeecceeeecCCCCC-----
Q 001340 170 MEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLDPTG----- 242 (1096)
Q Consensus 170 l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL~~~~----- 242 (1096)
|+|||+||||||||||||||||+|+ ++|||||++++||..+... .+..|.|+|||+|||||+|+|||++..
T Consensus 82 l~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~ 159 (349)
T 3t0q_A 82 LDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNI 159 (349)
T ss_dssp GTTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC--------
T ss_pred HCCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhcccccccccccc
Confidence 9999999999999999999999996 4699999999999999753 356899999999999999999998642
Q ss_pred ------CcceEeeCC--CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCc
Q 001340 243 ------QNLRVREDA--QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDG 314 (1096)
Q Consensus 243 ------~~l~ire~~--~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~ 314 (1096)
..+.|++++ .|+||.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|++..... +.
T Consensus 160 ~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~ 237 (349)
T 3t0q_A 160 DEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHT--GE 237 (349)
T ss_dssp -------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTT--CC
T ss_pred ccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCC--CC
Confidence 467788775 47999999999999999999999999999999999999999999999999999876543 34
Q ss_pred EEEeEeEEEecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCC--CCcCCCCCccchhhccCCCCCcccee
Q 001340 315 VIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKA--SHVPYRDSKLTRLLQSSLSGHGHVSL 391 (1096)
Q Consensus 315 ~~~skL~lVDLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~--~hiPyRdSkLTrLLqdsLgGnskt~~ 391 (1096)
...|+|+||||||||| .+++++|.|++|+.+||+||++||+||.+|++++. .|||||||||||||||+|||||+|+|
T Consensus 238 ~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~m 317 (349)
T 3t0q_A 238 TSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLM 317 (349)
T ss_dssp EEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEE
T ss_pred eeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEE
Confidence 5789999999999999 67899999999999999999999999999987543 59999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHHHhccccccc
Q 001340 392 ICTVTPASSSMEETHNTLKFASRAKRVEIYA 422 (1096)
Q Consensus 392 I~~Isp~~~~~~ETlsTLrfa~rak~I~~~~ 422 (1096)
||||||+..+++||++||+||+|+++|+..+
T Consensus 318 i~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 318 FVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp EEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred EEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 9999999999999999999999999998643
No 20
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.1e-82 Score=727.22 Aligned_cols=319 Identities=34% Similarity=0.504 Sum_probs=250.1
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeEEEe--------eCCCEEEecC-------------CCCCcceecceecCCCCCh
Q 001340 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWY--------ADGDKIVRNE-------------YNPATAYAFDRVFGPHANS 154 (1096)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~--------~~~~~~~~~~-------------~~~~~~f~FD~VF~~~~~q 154 (1096)
.+.+++|+|+|||||++++|...+...+.. .++..+.+.. ......|.||+||+++++|
T Consensus 18 ~~~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q 97 (376)
T 2rep_A 18 GSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSGQ 97 (376)
T ss_dssp -----CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEECTTCCH
T ss_pred hccCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCcccc
Confidence 466899999999999999997654321111 1223333221 1224579999999999999
Q ss_pred hHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccCCCCC----CCCchHHHHHHHHHHhhcC--CCCeeEEEEeeee
Q 001340 155 QEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQN----SPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLE 228 (1096)
Q Consensus 155 ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~----~~GIipr~~~~LF~~i~~~--~~~~~~v~vS~lE 228 (1096)
++||+.+ .|+|+++|+|||+||||||||||||||||+|+.. .+|||||++++||+.++.. .+..|.|+|||+|
T Consensus 98 ~~Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~E 176 (376)
T 2rep_A 98 DEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVE 176 (376)
T ss_dssp HHHHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEE
T ss_pred hhhhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEEE
Confidence 9999986 5899999999999999999999999999999754 6899999999999999754 3568999999999
Q ss_pred eecceeeecCCCC-----CCcceEeeCC---CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEE
Q 001340 229 IYNEVINDLLDPT-----GQNLRVREDA---QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFT 300 (1096)
Q Consensus 229 IYnE~i~DLL~~~-----~~~l~ire~~---~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~ 300 (1096)
||||+|+|||++. ...+.|+++. .|++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+
T Consensus 177 IYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ift 256 (376)
T 2rep_A 177 IYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQ 256 (376)
T ss_dssp EETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEEEEE
T ss_pred EECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEE
Confidence 9999999999875 2468899883 5799999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCcEEEeEeEEEecCCCCC-cccccch----hhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCcc
Q 001340 301 LMIESSDHGDEYDGVIFSQLNLIDLAGSES-SKTETTG----LRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKL 375 (1096)
Q Consensus 301 i~v~~~~~~~~~~~~~~skL~lVDLAGSEr-~~t~~~g----~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkL 375 (1096)
|.|+...... .....|+|+||||||||| .++++.| .|++|+.+||+||++||+||.+|++++ .|||||||||
T Consensus 257 i~v~~~~~~~--~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~-~hVPYRdSkL 333 (376)
T 2rep_A 257 LQISGEHSSR--GLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKE-SHVPYRNSKL 333 (376)
T ss_dssp EEEEEEESSS--CCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTC-SCCCGGGSHH
T ss_pred EEEEEEecCC--CcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCC-CccCCcCCHH
Confidence 9999876543 345689999999999999 5688888 999999999999999999999999854 6999999999
Q ss_pred chhhccCCCCCccceeEEeeCCCCCCHHHHHHHHHHHHHhccc
Q 001340 376 TRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRV 418 (1096)
Q Consensus 376 TrLLqdsLgGnskt~~I~~Isp~~~~~~ETlsTLrfa~rak~I 418 (1096)
||||||+|||||+|+|||||||+..+++||++||+||+|++++
T Consensus 334 T~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 334 TYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp HHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999864
No 21
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=3.9e-82 Score=719.92 Aligned_cols=320 Identities=32% Similarity=0.495 Sum_probs=263.3
Q ss_pred CCCEEEEEEeCCCCh-hhhhcCCeEEEe-eC---CC-EEEec---CCCCCcceecceecCCCCChhHHHhhhhHHHHHHH
Q 001340 99 GDSISVTIRFRPLSE-REFQRGDEIAWY-AD---GD-KIVRN---EYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1096)
Q Consensus 99 ~~~I~V~vRvRP~~~-~E~~~~~~~~~~-~~---~~-~~~~~---~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~ 169 (1096)
+++|+|+|||||+++ .|......+.+. .+ +. .+.+. .....+.|.||+||+++++|++||+.+ .|+|+++
T Consensus 2 k~nIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~ 80 (347)
T 1f9v_A 2 RGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQSS 80 (347)
T ss_dssp -CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHH-HHHHGGG
T ss_pred CCCeEEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHHH-HHHHHHh
Confidence 589999999999987 443222222222 11 22 23222 123456899999999999999999985 5899999
Q ss_pred hcCCceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcC--CCCeeEEEEeeeeeecceeeecCCCCCC----
Q 001340 170 MEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLDPTGQ---- 243 (1096)
Q Consensus 170 l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL~~~~~---- 243 (1096)
|+|||+||||||||||||||||+|+ ++|||||++++||..|... .+..|.|+|||+|||||+|+|||++...
T Consensus 81 l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~ 158 (347)
T 1f9v_A 81 LDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKED 158 (347)
T ss_dssp GGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC--------
T ss_pred cCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccccc
Confidence 9999999999999999999999996 4799999999999999753 3568999999999999999999987643
Q ss_pred -----cceEeeCC--CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEE
Q 001340 244 -----NLRVREDA--QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVI 316 (1096)
Q Consensus 244 -----~l~ire~~--~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~ 316 (1096)
.+.|++++ .|++|.|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|....... +...
T Consensus 159 ~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~ 236 (347)
T 1f9v_A 159 TSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKT--GAHS 236 (347)
T ss_dssp -----CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC----CCEE
T ss_pred cccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCC--Ccee
Confidence 47788765 57899999999999999999999999999999999999999999999999999875432 3467
Q ss_pred EeEeEEEecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCC--CCCcCCCCCccchhhccCCCCCccceeEE
Q 001340 317 FSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGK--ASHVPYRDSKLTRLLQSSLSGHGHVSLIC 393 (1096)
Q Consensus 317 ~skL~lVDLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k--~~hiPyRdSkLTrLLqdsLgGnskt~~I~ 393 (1096)
.|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||||||||+|||||+|+|||
T Consensus 237 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~ 316 (347)
T 1f9v_A 237 YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFV 316 (347)
T ss_dssp EEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEE
T ss_pred eeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEE
Confidence 89999999999999 5689999999999999999999999999999865 47999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHHHHHHhcccccccc
Q 001340 394 TVTPASSSMEETHNTLKFASRAKRVEIYAS 423 (1096)
Q Consensus 394 ~Isp~~~~~~ETlsTLrfa~rak~I~~~~~ 423 (1096)
||||+..+++||++||+||+||++|++.+.
T Consensus 317 ~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 317 NISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp EECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred EeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 999999999999999999999999987653
No 22
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=3.1e-82 Score=726.06 Aligned_cols=315 Identities=37% Similarity=0.550 Sum_probs=256.2
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCeEEEe-eCCCEEEecCC----C-----CCcceecceecCCCCChhHHHhhhhHHHHH
Q 001340 98 SGDSISVTIRFRPLSEREFQRGDEIAWY-ADGDKIVRNEY----N-----PATAYAFDRVFGPHANSQEVYDVAARPVVK 167 (1096)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~~~~~~-~~~~~~~~~~~----~-----~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~ 167 (1096)
..++|+|+|||||++++|...+...++. .+...+++... . ..+.|.||+||+++++|++||+.++.|+|+
T Consensus 49 ~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~ 128 (387)
T 2heh_A 49 EEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQ 128 (387)
T ss_dssp CCCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHH
T ss_pred CCCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHHH
Confidence 3789999999999999998777654433 34444433211 1 235799999999999999999999999999
Q ss_pred HHhcCCceeEEeeccCCCCcccccCCC------CCCCCchHHHHHHHHHHhhcC--CCCeeEEEEeeeeeecceeeecCC
Q 001340 168 AAMEGVNGTVFAYGVTSSGKTHTMHGD------QNSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLD 239 (1096)
Q Consensus 168 ~~l~G~N~tIfaYGqTgSGKT~Tm~G~------~~~~GIipr~~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL~ 239 (1096)
++|+|||+||||||||||||||||+|+ ...+|||||++++||..+... .+..|.|+|||+|||||+|+|||+
T Consensus 129 ~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL~ 208 (387)
T 2heh_A 129 TIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLN 208 (387)
T ss_dssp HHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETTT
T ss_pred HHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECCC
Confidence 999999999999999999999999996 356899999999999999753 356899999999999999999999
Q ss_pred CCCCcceEeeCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEe
Q 001340 240 PTGQNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFS 318 (1096)
Q Consensus 240 ~~~~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~s 318 (1096)
+. ..+.|++|+ .|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|+... ...|
T Consensus 209 ~~-~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~-------~~~s 280 (387)
T 2heh_A 209 KK-AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG-------RMHG 280 (387)
T ss_dssp TT-EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESSS-------SEEE
T ss_pred CC-ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEECC-------eeee
Confidence 75 479999998 67999999999999999999999999999999999999999999999999998642 3679
Q ss_pred EeEEEecCCCCCc-ccc-cchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccC-CCCCccceeEEee
Q 001340 319 QLNLIDLAGSESS-KTE-TTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSS-LSGHGHVSLICTV 395 (1096)
Q Consensus 319 kL~lVDLAGSEr~-~t~-~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqds-LgGnskt~~I~~I 395 (1096)
+|+|||||||||. +++ +.|.+++|+.+||+||++||+||.+|++++ .|||||||||||||||+ |||||+|+|||||
T Consensus 281 kL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~-~hvPYRdSKLTrlLqdsllGgnskT~mIa~i 359 (387)
T 2heh_A 281 KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIATI 359 (387)
T ss_dssp EEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTGGGGSSTTEEEEEEEEE
T ss_pred EEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCC-CCCCccccHHHHHHhhhccCCCCeEEEEEEe
Confidence 9999999999994 444 567888999999999999999999999854 69999999999999999 6999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcccccc
Q 001340 396 TPASSSMEETHNTLKFASRAKRVEIY 421 (1096)
Q Consensus 396 sp~~~~~~ETlsTLrfa~rak~I~~~ 421 (1096)
||+..+++||++||+||+|||+|++.
T Consensus 360 sP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 360 SPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp CCBGGGHHHHHHHHHHHHHHCC----
T ss_pred CCccchHHHHHHHHHHHHHhccCcCC
Confidence 99999999999999999999999864
No 23
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=4.6e-82 Score=721.32 Aligned_cols=320 Identities=31% Similarity=0.456 Sum_probs=269.4
Q ss_pred CEEEEEEeCCCChhhhhcCCeE-EEeeCCCEEEecCC---------CCCcceecceecCCCCChhHHHhhhhHHHHHHHh
Q 001340 101 SISVTIRFRPLSEREFQRGDEI-AWYADGDKIVRNEY---------NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAM 170 (1096)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~-~~~~~~~~~~~~~~---------~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l 170 (1096)
+|+|+|||||+++.|...+... +...++.++.+... .....|.||+||+++++|++||+.++.|+|+++|
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 6999999999999998776543 33345555543321 1235799999999999999999999999999999
Q ss_pred c-CCceeEEeeccCCCCcccccCCCC-----CCCCchHHHHHHHHHHhhc-CCCCeeEEEEeeeeeecceeeecCCCCCC
Q 001340 171 E-GVNGTVFAYGVTSSGKTHTMHGDQ-----NSPGIIPLAIKDVFSIIQD-TPGREFLLRVSYLEIYNEVINDLLDPTGQ 243 (1096)
Q Consensus 171 ~-G~N~tIfaYGqTgSGKT~Tm~G~~-----~~~GIipr~~~~LF~~i~~-~~~~~~~v~vS~lEIYnE~i~DLL~~~~~ 243 (1096)
+ |||+||||||||||||||||+|+. ..+|||||++++||..++. ..+..|.|+|||+|||||+|+|||++..
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~- 159 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK- 159 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC---
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCc-
Confidence 6 999999999999999999999974 6799999999999999975 3456899999999999999999998764
Q ss_pred cceEeeCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEE
Q 001340 244 NLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNL 322 (1096)
Q Consensus 244 ~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~l 322 (1096)
.+.+++++ .|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|.... .....|+|+|
T Consensus 160 ~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~-----~~~~~skL~l 234 (360)
T 1ry6_A 160 MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN-----KNTSLGKIAF 234 (360)
T ss_dssp ---------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT-----TTEEEEEEEE
T ss_pred cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc-----CCcceeEEEE
Confidence 56778887 68999999999999999999999999999999999999999999999999998753 2356799999
Q ss_pred EecCCCCC-cccccch-hhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCC
Q 001340 323 IDLAGSES-SKTETTG-LRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASS 400 (1096)
Q Consensus 323 VDLAGSEr-~~t~~~g-~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~ 400 (1096)
|||||||| .++++.| .+++|+.+||+||++||+||.+|+.++ .|||||||||||||||+|||||+|+|||||||+..
T Consensus 235 VDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~ 313 (360)
T 1ry6_A 235 IDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDK-NHIPFRDSELTKVLRDIFVGKSKSIMIANISPTIS 313 (360)
T ss_dssp EECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTST-TSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGG
T ss_pred EECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCC-CCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCcc
Confidence 99999999 4566665 578899999999999999999998764 69999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcccccccccccc
Q 001340 401 SMEETHNTLKFASRAKRVEIYASRNKI 427 (1096)
Q Consensus 401 ~~~ETlsTLrfa~rak~I~~~~~~n~~ 427 (1096)
+++||++||+||+|||+|+|.+..|+.
T Consensus 314 ~~~ETlsTLrfA~rak~i~n~~~~~~~ 340 (360)
T 1ry6_A 314 CCEQTLNTLRYSSRVKNKGNSKLEGKP 340 (360)
T ss_dssp GHHHHHHHHHHHHHHCC----------
T ss_pred cHHHHHHHHHHHHHHhhcccCcccCCC
Confidence 999999999999999999997766553
No 24
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=1.1e-81 Score=729.24 Aligned_cols=326 Identities=34% Similarity=0.544 Sum_probs=270.5
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCCC-------CCcceecceecCCCCChhHHHhhhhHHHHHHH
Q 001340 97 RSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYN-------PATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1096)
Q Consensus 97 ~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~-------~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~ 169 (1096)
+.+|+|+|+|||||+.+.|...+...+...++.++.+.... ..+.|.||+||+++++|++||+. +.|+|+++
T Consensus 56 ~l~gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv~~~ 134 (412)
T 3u06_A 56 DLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEM-VSPLIQSA 134 (412)
T ss_dssp HHTCSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTT-THHHHHHH
T ss_pred HhCCCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHH-HHHHHHHH
Confidence 34789999999999999997666555555666665543221 24679999999999999999985 56999999
Q ss_pred hcCCceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcC--CCCeeEEEEeeeeeecceeeecCCCCCCcceE
Q 001340 170 MEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLDPTGQNLRV 247 (1096)
Q Consensus 170 l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~i 247 (1096)
|+|||+||||||||||||||||+|+++++|||||++++||..|... .+..|.|+|||+|||||.|+|||++....+.+
T Consensus 135 l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~i 214 (412)
T 3u06_A 135 LDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEI 214 (412)
T ss_dssp HTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCCCCCE
T ss_pred HCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCCCcee
Confidence 9999999999999999999999999999999999999999999753 35699999999999999999999987766666
Q ss_pred e--eCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEEe
Q 001340 248 R--EDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLID 324 (1096)
Q Consensus 248 r--e~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVD 324 (1096)
+ +++ .|+||.|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|.|....... .....|+|+|||
T Consensus 215 ~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~~kL~lVD 292 (412)
T 3u06_A 215 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEK--QEISVGSINLVD 292 (412)
T ss_dssp EECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTT--TEEEEEEEEEEE
T ss_pred eeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCC--CCEEEEEEEEEE
Confidence 5 454 57999999999999999999999999999999999999999999999999998876433 456789999999
Q ss_pred cCCCCCcccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHH
Q 001340 325 LAGSESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEE 404 (1096)
Q Consensus 325 LAGSEr~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~E 404 (1096)
|||||+.+ .|.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+|||||+|+|||||||+..+++|
T Consensus 293 LAGSEr~~---~~~rl~E~~~INkSL~aLg~vI~aL~~~-~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~E 368 (412)
T 3u06_A 293 LAGSESPK---TSTRMTETKNINRSLSELTNVILALLQK-QDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQE 368 (412)
T ss_dssp CCCCCC-------------CTTTHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHHH
T ss_pred CCCCCcCC---ccchhHhHHHHhHHHHHHHHHHHHHhcc-CCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhHHH
Confidence 99999864 4689999999999999999999999985 4699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccc-ccccccccC
Q 001340 405 THNTLKFASRAKRVEI-YASRNKIID 429 (1096)
Q Consensus 405 TlsTLrfa~rak~I~~-~~~~n~~~~ 429 (1096)
|++||+||+|++.|+. .+++|.+.+
T Consensus 369 Tl~TLrfA~rv~~i~~~~~~~n~~~~ 394 (412)
T 3u06_A 369 SVKSLRFAASVNSCKMTKAKRNRYLN 394 (412)
T ss_dssp HHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHHHhhcccccccccccCC
Confidence 9999999999999984 445565443
No 25
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=5.6e-82 Score=727.88 Aligned_cols=317 Identities=36% Similarity=0.542 Sum_probs=260.3
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCeEEEe-eCCCEEEecCC----C-----CCcceecceecCCCCChhHHHhhhhHHHHH
Q 001340 98 SGDSISVTIRFRPLSEREFQRGDEIAWY-ADGDKIVRNEY----N-----PATAYAFDRVFGPHANSQEVYDVAARPVVK 167 (1096)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~~~~~~-~~~~~~~~~~~----~-----~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~ 167 (1096)
..++|+|+|||||++..|...+...++. .++..+++... . ..+.|.||+||+++++|++||+.++.|+|+
T Consensus 69 ~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~ 148 (410)
T 1v8k_A 69 EEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQ 148 (410)
T ss_dssp SCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHH
T ss_pred CCCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHHH
Confidence 3789999999999999998777654443 44444433211 1 235799999999999999999999999999
Q ss_pred HHhcCCceeEEeeccCCCCcccccCCCC------CCCCchHHHHHHHHHHhhcC--CCCeeEEEEeeeeeecceeeecCC
Q 001340 168 AAMEGVNGTVFAYGVTSSGKTHTMHGDQ------NSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLD 239 (1096)
Q Consensus 168 ~~l~G~N~tIfaYGqTgSGKT~Tm~G~~------~~~GIipr~~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL~ 239 (1096)
++|+|||+||||||||||||||||+|+. ..+|||||++++||..+... .+..|.|+|||+|||||+|+|||+
T Consensus 149 ~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~ 228 (410)
T 1v8k_A 149 TIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN 228 (410)
T ss_dssp HHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTT
T ss_pred HHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECCC
Confidence 9999999999999999999999999963 46899999999999999643 356899999999999999999999
Q ss_pred CCCCcceEeeCC-CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEe
Q 001340 240 PTGQNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFS 318 (1096)
Q Consensus 240 ~~~~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~s 318 (1096)
+. ..+.|++|+ .|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|.+.. ...|
T Consensus 229 ~~-~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~-------~~~s 300 (410)
T 1v8k_A 229 KK-AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG-------RLHG 300 (410)
T ss_dssp TT-EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESSS-------SEEE
T ss_pred CC-CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeCC-------ccee
Confidence 75 479999998 67999999999999999999999999999999999999999999999999998642 3679
Q ss_pred EeEEEecCCCCCc-ccc-cchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccC-CCCCccceeEEee
Q 001340 319 QLNLIDLAGSESS-KTE-TTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSS-LSGHGHVSLICTV 395 (1096)
Q Consensus 319 kL~lVDLAGSEr~-~t~-~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqds-LgGnskt~~I~~I 395 (1096)
+|+|||||||||. +++ +.|.+++|+.+||+||++||+||.+|+.++ .|||||||||||||||+ |||||+|+|||||
T Consensus 301 kL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~-~hIPYRdSKLTrLLqdsllGgnskT~mIa~i 379 (410)
T 1v8k_A 301 KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIAMI 379 (410)
T ss_dssp EEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC-------CCCCHHHHHTTHHHHSSSEEEEEEEEE
T ss_pred EEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCC-CCCCcccchhHHHHhhcccCCCceEEEEEEe
Confidence 9999999999994 454 567888999999999999999999999754 69999999999999999 6999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcccccccc
Q 001340 396 TPASSSMEETHNTLKFASRAKRVEIYAS 423 (1096)
Q Consensus 396 sp~~~~~~ETlsTLrfa~rak~I~~~~~ 423 (1096)
||+..+++||++||+||+|||+|..+|.
T Consensus 380 SP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 380 SPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp CCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred CCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 9999999999999999999999987653
No 26
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-80 Score=719.86 Aligned_cols=321 Identities=32% Similarity=0.503 Sum_probs=268.7
Q ss_pred CCCCEEEEEEeCCCChh-hhhcCCeEEEe-eCC---C-EEEec---CCCCCcceecceecCCCCChhHHHhhhhHHHHHH
Q 001340 98 SGDSISVTIRFRPLSER-EFQRGDEIAWY-ADG---D-KIVRN---EYNPATAYAFDRVFGPHANSQEVYDVAARPVVKA 168 (1096)
Q Consensus 98 ~~~~I~V~vRvRP~~~~-E~~~~~~~~~~-~~~---~-~~~~~---~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~ 168 (1096)
.+|+|+|+|||||+.+. |......+.+. .+. . .+... .....+.|.||+||+++++|++||+.+ .|+|++
T Consensus 57 lkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v-~~lv~~ 135 (403)
T 4etp_A 57 LRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQS 135 (403)
T ss_dssp HHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHHHHHHHH-HHHHHH
T ss_pred cCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCchHHHHHHH-HHHHHH
Confidence 46899999999999877 33333333332 221 1 12211 122346799999999999999999985 589999
Q ss_pred HhcCCceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhc--CCCCeeEEEEeeeeeecceeeecCCCCC----
Q 001340 169 AMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLDPTG---- 242 (1096)
Q Consensus 169 ~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~--~~~~~~~v~vS~lEIYnE~i~DLL~~~~---- 242 (1096)
+|+|||+||||||||||||||||+|+ ++|||||++++||..|.. ..+..|.|+|||+|||||+|+|||++..
T Consensus 136 ~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 213 (403)
T 4etp_A 136 SLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKE 213 (403)
T ss_dssp HHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC------
T ss_pred HhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCcccccc
Confidence 99999999999999999999999996 469999999999999975 4456899999999999999999998753
Q ss_pred -----CcceEeeCC--CCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcE
Q 001340 243 -----QNLRVREDA--QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGV 315 (1096)
Q Consensus 243 -----~~l~ire~~--~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~ 315 (1096)
..+.|++++ .|++|.|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|....... +..
T Consensus 214 ~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~ 291 (403)
T 4etp_A 214 DTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKT--GAH 291 (403)
T ss_dssp --CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTT--CCE
T ss_pred ccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecCC--CCe
Confidence 356788776 46899999999999999999999999999999999999999999999999999876433 345
Q ss_pred EEeEeEEEecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCC--CCcCCCCCccchhhccCCCCCccceeE
Q 001340 316 IFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKA--SHVPYRDSKLTRLLQSSLSGHGHVSLI 392 (1096)
Q Consensus 316 ~~skL~lVDLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~--~hiPyRdSkLTrLLqdsLgGnskt~~I 392 (1096)
..|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++.. .|||||||||||||||+|||||+|+||
T Consensus 292 ~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mi 371 (403)
T 4etp_A 292 SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMF 371 (403)
T ss_dssp EEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEEEE
T ss_pred eEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEEEE
Confidence 789999999999999 67899999999999999999999999999987543 599999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhcccccccc
Q 001340 393 CTVTPASSSMEETHNTLKFASRAKRVEIYAS 423 (1096)
Q Consensus 393 ~~Isp~~~~~~ETlsTLrfa~rak~I~~~~~ 423 (1096)
|||||+..+++||++||+||+|+++|++.+.
T Consensus 372 ~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 372 VNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp EEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred EEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 9999999999999999999999999987663
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=7.2e-80 Score=699.33 Aligned_cols=310 Identities=29% Similarity=0.470 Sum_probs=245.6
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeEEEee---CCCEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcC
Q 001340 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYA---DGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEG 172 (1096)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~---~~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G 172 (1096)
....++|+|+|||||+.+.|......++..+ ++..+... .+.|.||+||+++++|++||+.++.|+|+.+|+|
T Consensus 18 ~~~~~~VrV~vRvRP~~~~e~~~~~~~v~~~~~~~~~~~~~~----~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G 93 (344)
T 3dc4_A 18 GAKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIVD----QNEFHFDHAFPATISQDEMYQALILPLVDKLLEG 93 (344)
T ss_dssp -CCCSEEEEEEEECCCC-------CCSEECCSSSCSSEEEET----TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCcccccCCceEEEecCCCCCceEEec----CcEEEcceEECCCCCHHHHHHhhccchhhHhhCC
Confidence 3557899999999999987743333333333 24444432 4689999999999999999999999999999999
Q ss_pred CceeEEeeccCCCCcccccCCCC------CCCCchHHHHHHHHHHhhcCC---CCeeEEEEeeeeeecceeeecCCCCCC
Q 001340 173 VNGTVFAYGVTSSGKTHTMHGDQ------NSPGIIPLAIKDVFSIIQDTP---GREFLLRVSYLEIYNEVINDLLDPTGQ 243 (1096)
Q Consensus 173 ~N~tIfaYGqTgSGKT~Tm~G~~------~~~GIipr~~~~LF~~i~~~~---~~~~~v~vS~lEIYnE~i~DLL~~~~~ 243 (1096)
||+||||||||||||||||+|+. +++|||||++++||+.|.... ...|.|+|||+|||||+|+|||++...
T Consensus 94 ~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 173 (344)
T 3dc4_A 94 FQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPH 173 (344)
T ss_dssp CCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCTT
T ss_pred CceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCCC
Confidence 99999999999999999999874 568999999999999997543 347999999999999999999987653
Q ss_pred cceEeeCCCCcEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCCcEEEeEeEEE
Q 001340 244 NLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLI 323 (1096)
Q Consensus 244 ~l~ire~~~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lV 323 (1096)
... .+..+.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++. ...|+|+||
T Consensus 174 ~~~-----~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~--------~~~skl~lV 240 (344)
T 3dc4_A 174 MPM-----VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK--------THHSRMNIV 240 (344)
T ss_dssp SBC-----CSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS--------SCEEEEEEE
T ss_pred Ccc-----ccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec--------CcEEEEEEE
Confidence 211 1334568999999999999999999999999999999999999999999999753 146999999
Q ss_pred ecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCH
Q 001340 324 DLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSM 402 (1096)
Q Consensus 324 DLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~ 402 (1096)
||||||| .++++.|.+++|+.+||+||++||+||.+|+.++ .|||||||||||||||+|||||+|+|||||||+..++
T Consensus 241 DLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~-~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~ 319 (344)
T 3dc4_A 241 DLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDL 319 (344)
T ss_dssp ECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTC-SSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGGGH
T ss_pred ECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccC-CcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchhhH
Confidence 9999999 5689999999999999999999999999999875 5999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccc
Q 001340 403 EETHNTLKFASRAKRVEIYAS 423 (1096)
Q Consensus 403 ~ETlsTLrfa~rak~I~~~~~ 423 (1096)
+||++||+||+||+.....+.
T Consensus 320 ~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 320 SETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp HHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999998875543
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=2.1e-74 Score=717.77 Aligned_cols=318 Identities=34% Similarity=0.548 Sum_probs=252.4
Q ss_pred CCCCCEEEEEEeC----CCChhhhhcCCeEEEeeCC--------CEEEec-C---CCCCcceecceecCCCCChhHHHhh
Q 001340 97 RSGDSISVTIRFR----PLSEREFQRGDEIAWYADG--------DKIVRN-E---YNPATAYAFDRVFGPHANSQEVYDV 160 (1096)
Q Consensus 97 ~~~~~I~V~vRvR----P~~~~E~~~~~~~~~~~~~--------~~~~~~-~---~~~~~~f~FD~VF~~~~~q~~Vy~~ 160 (1096)
...+.++|||||| |....|...+..++..... ..+++. . ....+.|.||+||+++++|++||+.
T Consensus 371 ~il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~ 450 (715)
T 4h1g_A 371 ALKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEE 450 (715)
T ss_dssp SSSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSCCHHHHGGG
T ss_pred HHHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCCCHHHHHHH
Confidence 3458999999999 5555554455443332211 122221 1 1235689999999999999999997
Q ss_pred hhHHHHHHHhcCCceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcC--CCCeeEEEEeeeeeecceeeecC
Q 001340 161 AARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLL 238 (1096)
Q Consensus 161 ~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL 238 (1096)
+ .|+|+++|+|||+||||||||||||||||+|+ ++|||||++++||+.|+.. .+..|.|+|||+|||||+|+|||
T Consensus 451 ~-~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl 527 (715)
T 4h1g_A 451 L-SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLL 527 (715)
T ss_dssp T-HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEESS
T ss_pred H-HHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEECC
Confidence 5 58999999999999999999999999999994 5799999999999999753 45689999999999999999999
Q ss_pred CCC---CCcceEeeCC-CC-cEeeCceEEEeCCHHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCC
Q 001340 239 DPT---GQNLRVREDA-QG-TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYD 313 (1096)
Q Consensus 239 ~~~---~~~l~ire~~-~g-~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~ 313 (1096)
+|. ...+.++++. .| ++|.||+++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|++..... .
T Consensus 528 ~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~~--~ 605 (715)
T 4h1g_A 528 NPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLT--K 605 (715)
T ss_dssp SCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETTT--C
T ss_pred CCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecCC--C
Confidence 875 3457777655 45 899999999999999999999999999999999999999999999999999876543 3
Q ss_pred cEEEeEeEEEecCCCCC-cccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeE
Q 001340 314 GVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLI 392 (1096)
Q Consensus 314 ~~~~skL~lVDLAGSEr-~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I 392 (1096)
....|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+.++..|||||||||||||||+|||||+|+||
T Consensus 606 ~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t~~i 685 (715)
T 4h1g_A 606 ESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMF 685 (715)
T ss_dssp CEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEEEEE
T ss_pred CEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceEEEE
Confidence 46789999999999999 56899999999999999999999999999998888899999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhcccc
Q 001340 393 CTVTPASSSMEETHNTLKFASRAKRVE 419 (1096)
Q Consensus 393 ~~Isp~~~~~~ETlsTLrfa~rak~I~ 419 (1096)
|||||+..+++||++||+||+|||+|+
T Consensus 686 ~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 686 VNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred EEECCChhhHHHHHHHHHHHHHhccce
Confidence 999999999999999999999999996
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.96 E-value=7.2e-31 Score=244.93 Aligned_cols=98 Identities=43% Similarity=0.627 Sum_probs=94.8
Q ss_pred HHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHHHHHHHHHHHhcccccccc
Q 001340 344 SYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYAS 423 (1096)
Q Consensus 344 ~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ETlsTLrfa~rak~I~~~~~ 423 (1096)
.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+|||||+|+..+++||++||+||+|||.|++.|.
T Consensus 2 ~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~~ 81 (100)
T 2kin_B 2 KNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS 81 (100)
T ss_dssp CBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEEC
T ss_pred CcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcce
Confidence 57999999999999999998778999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCHHHHHHHHHHHH
Q 001340 424 RNKIIDEKSLIKKYQREI 441 (1096)
Q Consensus 424 ~n~~~~~~~~i~~~~~ei 441 (1096)
+|+..+.+.++++|++||
T Consensus 82 ~n~~~~~~~l~~~~~~e~ 99 (100)
T 2kin_B 82 VNLELTAEEWKKKYEKEK 99 (100)
T ss_dssp CEEECCHHHHHHHHHHHH
T ss_pred eccCCCHHHHHHHHHHhh
Confidence 999999999999999887
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.94 E-value=5.2e-28 Score=233.16 Aligned_cols=98 Identities=42% Similarity=0.608 Sum_probs=92.0
Q ss_pred HhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHHHHHHHHHHHhccccccccccc
Q 001340 347 NKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNK 426 (1096)
Q Consensus 347 NkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ETlsTLrfa~rak~I~~~~~~n~ 426 (1096)
|+||++||+||.+|++++..||||||||||+||+|+|||||+|+|||||+|+..+++||++||+||+|||.|+|.|.+|.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 89999999999999998778999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHH
Q 001340 427 IIDEKSLIKKYQREISSL 444 (1096)
Q Consensus 427 ~~~~~~~i~~~~~ei~~L 444 (1096)
..+.+.++++|++++..+
T Consensus 81 ~~~~~~l~~~~~~e~~~~ 98 (117)
T 3kin_B 81 ELTAEEWKKKYEKEKEKN 98 (117)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 998888887777765544
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.1e-24 Score=231.36 Aligned_cols=262 Identities=10% Similarity=0.116 Sum_probs=170.8
Q ss_pred CCCCEEEEEEeCCCC-hhhhhcCCeEEEeeCCCEEEecCCCCCcceecceecCCCCChh--HHHhhhhHHHHHHHhc-CC
Q 001340 98 SGDSISVTIRFRPLS-EREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQ--EVYDVAARPVVKAAME-GV 173 (1096)
Q Consensus 98 ~~~~I~V~vRvRP~~-~~E~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~VF~~~~~q~--~Vy~~~~~plV~~~l~-G~ 173 (1096)
-+|+|||+|||||.. + +...+-++++. +.+. . ..+.|.||+||++...|+ +||+. +.++|+.+|+ ||
T Consensus 22 LKGnIRVFcrvrp~~~p-----~~~~v~y~~~~-I~v~-~-~~k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scLd~Gy 92 (298)
T 2o0a_A 22 QKGTMRCYAYVMEQNLP-----ENLLFDYENGV-ITQG-L-SEHVYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCLNQKK 92 (298)
T ss_dssp HHTCCEEEEEECGGGSC-----TTEEEETTTTE-EEET-T-TCCEEECSEEEETTTSCHHHHHHHT-THHHHHHHHHTTC
T ss_pred hhCceEEEEEeccccCC-----ccceeecCccc-eeec-C-CCceEEeeeEECccccccHHHHHHH-HHHHHHHHHhCCC
Confidence 469999999999964 3 22224444444 3332 2 347899999999999999 99997 8889999999 99
Q ss_pred ceeEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhc-CCCCeeEEEEeeeeee-cceeeecCCC--CCCcceEee
Q 001340 174 NGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD-TPGREFLLRVSYLEIY-NEVINDLLDP--TGQNLRVRE 249 (1096)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~-~~~~~~~v~vS~lEIY-nE~i~DLL~~--~~~~l~ire 249 (1096)
|+||||||||||||| ||++..+|..... .. ..|.+.+||+||| ||.++|||.. .+..+.|+.
T Consensus 93 NvcIfSyGQTGsGKT-------------~ral~q~f~~~~~~~~-~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~eIk~ 158 (298)
T 2o0a_A 93 NFNLISLSTTPHGSL-------------RESLIKFLAEKDTIYQ-KQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKL 158 (298)
T ss_dssp CEEEEEECSSCCHHH-------------HHHHHHHHHSTTSHHH-HHEEEEEEEEEEECC-CEEETTSCCC------CEE
T ss_pred ceEEEEECCCCCCcc-------------HHHHHHHHHHhhhhcc-cceEEEEEEEEEecCCchHHhcCCCCCCCcceEEe
Confidence 999999999999999 9999999987643 22 7899999999999 9999999962 334667777
Q ss_pred CCC-CcEeeCceEEEeCC-HHHHHHHHHHHHhhcccCCcccccCCCCceeEEEEEEEeecCCCCCC-cEEEeEeEEEecC
Q 001340 250 DAQ-GTYVEGIKEEVVLS-PGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYD-GVIFSQLNLIDLA 326 (1096)
Q Consensus 250 ~~~-g~~v~gl~e~~V~s-~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~-~~~~skL~lVDLA 326 (1096)
+.. +++|.|++.+.|.+ ++|+..++..+.. +..|. +.-.|+.+.+...+.....+ .-..--++|+.+.
T Consensus 159 ~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~------~~~~~---~gi~i~k~~~~~~~~~~~~~~~~~~~d~yf~e~~ 229 (298)
T 2o0a_A 159 KFEKHSISLDSKLVIIENGLEDLPLNFSCDEH------PNLPH---SGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIELN 229 (298)
T ss_dssp EECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC-------CCCEEEEEEEEC
T ss_pred cCCCCEEecccEEEEccccHHHHHHHhhcccc------cccCC---CCceEEEEEEecCcccccccCCCCceEEEEEEeC
Confidence 664 56899999999999 8988877622221 11221 22445555554421110000 0011246777764
Q ss_pred CCCCcccccchhhhhhhHHHHhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccCCCCCccceeEEeeCCCCCCHHHHH
Q 001340 327 GSESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETH 406 (1096)
Q Consensus 327 GSEr~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~k~~hiPyRdSkLTrLLqdsLgGnskt~~I~~Isp~~~~~~ETl 406 (1096)
-. ++...|.+.+ ..+ -+-.|+++-+|+.-|. ..+-++++++.-... .-
T Consensus 230 ~~-------------------~~~~~l~~~~---~~~-----~~~~spi~~il~~ll~-~tks~~~~~l~~~~~----~~ 277 (298)
T 2o0a_A 230 NL-------------------KSIEQFDKSI---FKK-----ESCETPIALVLKKLIS-DTKSFFLLNLNDSKN----VN 277 (298)
T ss_dssp SH-------------------HHHHHHHHHH---HTC------CCCSHHHHHHHHHHH-HSBCEEEEEECCGGG----HH
T ss_pred CH-------------------HHHHHHHhhc---ccc-----cccCCcHHHHHHHHHh-cCcceEEEEecCCCc----hh
Confidence 21 1122333322 221 3456777888876664 568899999986432 22
Q ss_pred HHHHHHHHhcccccccc
Q 001340 407 NTLKFASRAKRVEIYAS 423 (1096)
Q Consensus 407 sTLrfa~rak~I~~~~~ 423 (1096)
.-|..+++..++.|...
T Consensus 278 ~lL~~s~~i~~~~~~~~ 294 (298)
T 2o0a_A 278 KLLTISEEVQTQLCKRK 294 (298)
T ss_dssp HHHHHHHHHHHHTC---
T ss_pred HHHHHHHHhhcccCccc
Confidence 37888888888776443
No 32
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.1e-11 Score=108.18 Aligned_cols=51 Identities=37% Similarity=0.862 Sum_probs=48.1
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeeccC
Q 001340 1046 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAFT 1096 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~~~CPiCr~~i~~~i~if~ 1096 (1096)
+...|+||++++++++|+||||.++|..|+..+..||+||.+|..++++|.
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSG 64 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCS
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeec
Confidence 455899999999999999999999999999999999999999999999984
No 33
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.12 E-value=4.5e-11 Score=107.43 Aligned_cols=48 Identities=29% Similarity=0.849 Sum_probs=46.2
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeeccC
Q 001340 1049 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAFT 1096 (1096)
Q Consensus 1049 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~~~CPiCr~~i~~~i~if~ 1096 (1096)
.|+||++...+++++||||.+||..|+..+..||+||.+|..++++|.
T Consensus 20 ~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~ 67 (79)
T 2yho_A 20 LCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYL 67 (79)
T ss_dssp BCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECBC
T ss_pred EeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEEe
Confidence 799999999999999999999999999999999999999999999983
No 34
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.04 E-value=3e-11 Score=103.81 Aligned_cols=50 Identities=24% Similarity=0.599 Sum_probs=45.4
Q ss_pred cccccccccccccceEEe--CCCCcccchhhhhcCC----CCCCCcccccceeecc
Q 001340 1046 NSHMCKVCFESPTAAILL--PCRHFCLCKSCSLACS----ECPICRTKISDRLFAF 1095 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~vl~--pCgH~~~C~~C~~~~~----~CPiCr~~i~~~i~if 1095 (1096)
....|+||++++++++++ ||||.++|..|+..+. .||+||++|...+++|
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 61 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEe
Confidence 445899999999998887 9999999999987775 8999999999999998
No 35
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.03 E-value=2e-10 Score=101.73 Aligned_cols=47 Identities=34% Similarity=0.913 Sum_probs=45.7
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeecc
Q 001340 1049 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1095 (1096)
Q Consensus 1049 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~~~CPiCr~~i~~~i~if 1095 (1096)
.|.||++...+.+++||||.+||..|......||+||.+|...+++|
T Consensus 26 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 26 LCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIL 72 (74)
T ss_dssp BCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECB
T ss_pred CCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEe
Confidence 79999999999999999999999999999999999999999999998
No 36
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=2.1e-10 Score=101.85 Aligned_cols=47 Identities=36% Similarity=0.949 Sum_probs=45.6
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeecc
Q 001340 1049 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1095 (1096)
Q Consensus 1049 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~~~CPiCr~~i~~~i~if 1095 (1096)
.|+||++...+.+++||||.+||..|......||+||.+|...+++|
T Consensus 27 ~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 27 LCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIF 73 (75)
T ss_dssp SCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCC
T ss_pred CCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEe
Confidence 79999999999999999999999999999999999999999999998
No 37
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.95 E-value=9.2e-11 Score=101.09 Aligned_cols=49 Identities=22% Similarity=0.655 Sum_probs=44.4
Q ss_pred ccccccccccccceEEe--CCCCcccchhhhhcC----CCCCCCcccccceeecc
Q 001340 1047 SHMCKVCFESPTAAILL--PCRHFCLCKSCSLAC----SECPICRTKISDRLFAF 1095 (1096)
Q Consensus 1047 ~~~C~IC~~~~~~~vl~--pCgH~~~C~~C~~~~----~~CPiCr~~i~~~i~if 1095 (1096)
...|+||++++++++++ ||||.++|..|+..+ ..||+||++|...+++|
T Consensus 8 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 62 (64)
T 2vje_A 8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62 (64)
T ss_dssp GSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEE
T ss_pred cCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeee
Confidence 44799999999999998 999999999997665 35999999999999998
No 38
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.71 E-value=5.7e-09 Score=118.55 Aligned_cols=47 Identities=34% Similarity=0.994 Sum_probs=46.0
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeecc
Q 001340 1049 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1095 (1096)
Q Consensus 1049 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~~~CPiCr~~i~~~i~if 1095 (1096)
.|+||++...+.+++||||.|||..|...+..||+||.+|...+++|
T Consensus 297 ~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~ 343 (345)
T 3t6p_A 297 TCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTF 343 (345)
T ss_dssp BCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC
T ss_pred CCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEee
Confidence 79999999999999999999999999999999999999999999998
No 39
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.29 E-value=8.8e-07 Score=116.07 Aligned_cols=36 Identities=17% Similarity=0.370 Sum_probs=25.9
Q ss_pred hHHHhhhhHHHHHHH-hcCCceeEEeeccCCCCccccc
Q 001340 155 QEVYDVAARPVVKAA-MEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 155 ~~Vy~~~~~plV~~~-l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
-.||. ++......+ -.|.|-||+..|-+|||||.+.
T Consensus 150 PHi~a-ia~~ay~~m~~~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 150 PHIYA-IADTAYRSMLQDREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp CCHHH-HHHHHHHHHHHHTCCEEEECCCSTTSSTTHHH
T ss_pred ccHhh-hHHHHHHHHHhcCCCcEEEEecCCCCCccHHH
Confidence 35775 333333333 3799999999999999999763
No 40
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.26 E-value=0.0017 Score=69.29 Aligned_cols=20 Identities=10% Similarity=-0.019 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001340 644 NLEREIQEKRRQMRILEQRI 663 (1096)
Q Consensus 644 kL~~elrdKeeei~~L~qki 663 (1096)
.|..++......++.+..++
T Consensus 10 ~l~~~~~~~~~~~~~l~~~l 29 (284)
T 1c1g_A 10 MLKLDKENALDRADEAEADK 29 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 41
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.25 E-value=2.9e-07 Score=91.22 Aligned_cols=44 Identities=36% Similarity=0.773 Sum_probs=37.7
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC----CCCCCCccccccee
Q 001340 1048 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISDRL 1092 (1096)
Q Consensus 1048 ~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCr~~i~~~i 1092 (1096)
..|+||++...+.+++||||. ||..|.... ..||+||.+|....
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred CCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 369999999999999999997 999995442 56999999997654
No 42
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.13 E-value=2.2e-06 Score=112.27 Aligned_cols=38 Identities=11% Similarity=0.036 Sum_probs=20.2
Q ss_pred CchHHHHHHHHHHhhcCCC---CeeEEEEeeeeeecceeee
Q 001340 199 GIIPLAIKDVFSIIQDTPG---REFLLRVSYLEIYNEVIND 236 (1096)
Q Consensus 199 GIipr~~~~LF~~i~~~~~---~~~~v~vS~lEIYnE~i~D 236 (1096)
+|.-+.+.+|-..|...=. ......|..+.||.=.+++
T Consensus 432 ~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~GFE~f~ 472 (1184)
T 1i84_S 432 AKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFE 472 (1184)
T ss_dssp HHHHHHHHHHHHHHTTTCC------CEEEEEEECCCCCCCS
T ss_pred HHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecCCcCCCC
Confidence 5666666666666654211 1234566777777544443
No 43
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.12 E-value=9.2e-07 Score=76.28 Aligned_cols=48 Identities=27% Similarity=0.864 Sum_probs=40.2
Q ss_pred ccccccccccccc-eEEeCCCCcccchhhhhc----CCCCCCCcccccceeecc
Q 001340 1047 SHMCKVCFESPTA-AILLPCRHFCLCKSCSLA----CSECPICRTKISDRLFAF 1095 (1096)
Q Consensus 1047 ~~~C~IC~~~~~~-~vl~pCgH~~~C~~C~~~----~~~CPiCr~~i~~~i~if 1095 (1096)
...|.||++...+ ++++||||. ||..|... ...||+||..+...++.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred CCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence 4579999999988 589999999 99999643 367999999998877654
No 44
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=5.6e-07 Score=78.15 Aligned_cols=49 Identities=27% Similarity=0.776 Sum_probs=40.9
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccceeecc
Q 001340 1045 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISDRLFAF 1095 (1096)
Q Consensus 1045 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCr~~i~~~i~if 1095 (1096)
.....|.||++...+ +++||||. ||..|.... ..||+||..|.....+|
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 345589999999999 88999999 999997654 56999999998766554
No 45
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=1.3e-06 Score=76.33 Aligned_cols=44 Identities=27% Similarity=0.870 Sum_probs=38.0
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001340 1046 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISD 1090 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCr~~i~~ 1090 (1096)
....|.||++...+.+++||||. ||..|.... ..||+||..|..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34579999999999999999999 999997654 569999999864
No 46
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=1.5e-06 Score=75.98 Aligned_cols=44 Identities=23% Similarity=0.788 Sum_probs=37.4
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcC-------CCCCCCcccccc
Q 001340 1046 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-------SECPICRTKISD 1090 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-------~~CPiCr~~i~~ 1090 (1096)
....|.||++...+.+++||||. ||..|.... ..||+||..|..
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 44589999999999999999999 999995433 369999999864
No 47
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=1.5e-06 Score=77.80 Aligned_cols=46 Identities=26% Similarity=0.708 Sum_probs=38.6
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccce
Q 001340 1045 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISDR 1091 (1096)
Q Consensus 1045 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCr~~i~~~ 1091 (1096)
.....|.||++...+.+++||||. ||..|.... ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGI 62 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSC
T ss_pred CCCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCcccccc
Confidence 345589999999999999999998 999996443 5699999998743
No 48
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.01 E-value=1.6e-06 Score=73.48 Aligned_cols=48 Identities=25% Similarity=0.696 Sum_probs=38.2
Q ss_pred ccccccccccccce-------EEeCCCCcccchhhhhc----CCCCCCCccccc--ceeecc
Q 001340 1047 SHMCKVCFESPTAA-------ILLPCRHFCLCKSCSLA----CSECPICRTKIS--DRLFAF 1095 (1096)
Q Consensus 1047 ~~~C~IC~~~~~~~-------vl~pCgH~~~C~~C~~~----~~~CPiCr~~i~--~~i~if 1095 (1096)
...|.||++...+. +++||||. ||..|... ...||+||..+. ..+++|
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 34799999977664 88899999 99999643 357999999987 455665
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.00 E-value=2.6e-06 Score=97.42 Aligned_cols=47 Identities=32% Similarity=0.812 Sum_probs=41.0
Q ss_pred cccccccccccceEEeCCCCcccchhhhh-----cCCCCCCCcccccceeecc
Q 001340 1048 HMCKVCFESPTAAILLPCRHFCLCKSCSL-----ACSECPICRTKISDRLFAF 1095 (1096)
Q Consensus 1048 ~~C~IC~~~~~~~vl~pCgH~~~C~~C~~-----~~~~CPiCr~~i~~~i~if 1095 (1096)
..|+||++...+.+++||||. ||..|.. ....||+||.+|.....++
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECS
T ss_pred CCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeEe
Confidence 489999999999999999999 8999954 3467999999998876653
No 50
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.99 E-value=2.6e-06 Score=70.16 Aligned_cols=44 Identities=34% Similarity=0.785 Sum_probs=35.8
Q ss_pred cccccccccccccc----eEEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001340 1046 NSHMCKVCFESPTA----AILLPCRHFCLCKSCSLAC----SECPICRTKISD 1090 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~----~vl~pCgH~~~C~~C~~~~----~~CPiCr~~i~~ 1090 (1096)
+...|.||++...+ ++++||||. ||..|.... ..||+||..|.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 34579999998755 899999997 999995443 679999998853
No 51
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=1.6e-06 Score=74.59 Aligned_cols=45 Identities=27% Similarity=0.798 Sum_probs=36.5
Q ss_pred Ccccccccccccccce-------EEeCCCCcccchhhhhc----CCCCCCCcccccc
Q 001340 1045 PNSHMCKVCFESPTAA-------ILLPCRHFCLCKSCSLA----CSECPICRTKISD 1090 (1096)
Q Consensus 1045 ~~~~~C~IC~~~~~~~-------vl~pCgH~~~C~~C~~~----~~~CPiCr~~i~~ 1090 (1096)
.....|.||++...+. +++||||. ||..|... ...||+||..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3455899999987765 88999997 99999644 3679999999865
No 52
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.96 E-value=2.9e-06 Score=75.20 Aligned_cols=45 Identities=33% Similarity=0.756 Sum_probs=37.9
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhhc-----------CCCCCCCcccccc
Q 001340 1045 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-----------CSECPICRTKISD 1090 (1096)
Q Consensus 1045 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~-----------~~~CPiCr~~i~~ 1090 (1096)
.....|.||++...+.+++||||. ||..|... ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 345689999999999999999998 99999653 3469999998864
No 53
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.95 E-value=1.9e-06 Score=74.82 Aligned_cols=44 Identities=27% Similarity=0.813 Sum_probs=36.0
Q ss_pred cccccccccccccce-------EEeCCCCcccchhhhhc----CCCCCCCcccccc
Q 001340 1046 NSHMCKVCFESPTAA-------ILLPCRHFCLCKSCSLA----CSECPICRTKISD 1090 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~-------vl~pCgH~~~C~~C~~~----~~~CPiCr~~i~~ 1090 (1096)
+...|.||++...+. +++||||. ||..|... ...||+||..+..
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence 445899999987665 88999998 99999543 3679999999873
No 54
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=3.4e-06 Score=76.32 Aligned_cols=46 Identities=30% Similarity=0.639 Sum_probs=37.4
Q ss_pred CCcccccccccccccc----eEEeCCCCcccchhhhhcC-------CCCCCCcccccc
Q 001340 1044 DPNSHMCKVCFESPTA----AILLPCRHFCLCKSCSLAC-------SECPICRTKISD 1090 (1096)
Q Consensus 1044 ~~~~~~C~IC~~~~~~----~vl~pCgH~~~C~~C~~~~-------~~CPiCr~~i~~ 1090 (1096)
..+...|.||++...+ .+++||||. ||..|.... ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3445689999999888 899999998 999995433 579999997643
No 55
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.94 E-value=4.6e-06 Score=74.66 Aligned_cols=44 Identities=25% Similarity=0.725 Sum_probs=37.3
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhc----------CCCCCCCcccccc
Q 001340 1046 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLA----------CSECPICRTKISD 1090 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~----------~~~CPiCr~~i~~ 1090 (1096)
....|.||++...+.+++||||. ||..|... ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 34479999999999999999998 99999543 4579999998864
No 56
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=4.6e-06 Score=72.91 Aligned_cols=47 Identities=26% Similarity=0.642 Sum_probs=38.5
Q ss_pred CcccccccccccccceEEe-CCCCcccchhhhhc----CCCCCCCccccccee
Q 001340 1045 PNSHMCKVCFESPTAAILL-PCRHFCLCKSCSLA----CSECPICRTKISDRL 1092 (1096)
Q Consensus 1045 ~~~~~C~IC~~~~~~~vl~-pCgH~~~C~~C~~~----~~~CPiCr~~i~~~i 1092 (1096)
.....|.||++...+.+.+ ||||. ||..|... ...||+||..|...-
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 3455899999999988887 99998 99999533 367999999987643
No 57
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.89 E-value=3.5e-06 Score=70.24 Aligned_cols=44 Identities=34% Similarity=0.748 Sum_probs=37.4
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcC-CCCCCCcccccc
Q 001340 1046 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-SECPICRTKISD 1090 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-~~CPiCr~~i~~ 1090 (1096)
+...|.||++...+.+++||||. ||..|.... ..||+||+.+..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCc-ccHHHHccCCCCCCcCCcEeec
Confidence 34579999999999999999998 999997543 569999998763
No 58
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=4.5e-06 Score=71.62 Aligned_cols=45 Identities=24% Similarity=0.596 Sum_probs=37.9
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhhc-----CCCCCCCcccccc
Q 001340 1045 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-----CSECPICRTKISD 1090 (1096)
Q Consensus 1045 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~-----~~~CPiCr~~i~~ 1090 (1096)
.....|.||++...+.+.+||||. ||..|... ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 345689999999999999999999 99999542 3569999999875
No 59
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.89 E-value=8.3e-06 Score=79.03 Aligned_cols=41 Identities=32% Similarity=0.693 Sum_probs=36.0
Q ss_pred ccccccccccceEEeCCCCcccchhhhhc-----CCCCCCCcccccc
Q 001340 1049 MCKVCFESPTAAILLPCRHFCLCKSCSLA-----CSECPICRTKISD 1090 (1096)
Q Consensus 1049 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~-----~~~CPiCr~~i~~ 1090 (1096)
.|+||++...+.+++||||. ||..|... ...||+||.++..
T Consensus 54 ~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 54 QCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp BCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 79999999999999999999 99999532 2479999999875
No 60
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=5e-06 Score=74.38 Aligned_cols=44 Identities=34% Similarity=0.819 Sum_probs=37.4
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhc----------CCCCCCCcccccc
Q 001340 1046 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLA----------CSECPICRTKISD 1090 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~----------~~~CPiCr~~i~~ 1090 (1096)
....|.||++...+.+++||||. ||..|... ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 34589999999999999999998 99999543 4679999998874
No 61
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.88 E-value=3e-06 Score=75.73 Aligned_cols=50 Identities=22% Similarity=0.614 Sum_probs=38.3
Q ss_pred Ccccccccccccc--cceEEeC--CCCcccchhhhhcC-----CCCCCCcccccceeecc
Q 001340 1045 PNSHMCKVCFESP--TAAILLP--CRHFCLCKSCSLAC-----SECPICRTKISDRLFAF 1095 (1096)
Q Consensus 1045 ~~~~~C~IC~~~~--~~~vl~p--CgH~~~C~~C~~~~-----~~CPiCr~~i~~~i~if 1095 (1096)
.+...|+||++.. .+.+++| |||. ||..|...+ ..||.||+++.....+|
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred ccCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence 3455899999976 4567777 9999 999996554 36999999998765444
No 62
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.87 E-value=6e-06 Score=71.37 Aligned_cols=49 Identities=29% Similarity=0.689 Sum_probs=38.2
Q ss_pred Ccccccccccccc---cceEEeCCCCcccchhhhhc----CCCCCCCcccccceeec
Q 001340 1045 PNSHMCKVCFESP---TAAILLPCRHFCLCKSCSLA----CSECPICRTKISDRLFA 1094 (1096)
Q Consensus 1045 ~~~~~C~IC~~~~---~~~vl~pCgH~~~C~~C~~~----~~~CPiCr~~i~~~i~i 1094 (1096)
.....|.||++.. ..++++||||. ||..|... -..||+||..|...++.
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQLPS 67 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCCCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcCCC
Confidence 3455899997754 56788999999 99999543 35699999999876543
No 63
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.85 E-value=8.2e-06 Score=67.15 Aligned_cols=43 Identities=33% Similarity=0.739 Sum_probs=34.8
Q ss_pred cccccccccccccc---eEEeC-CCCcccchhhhhcC----CCCCCCccccc
Q 001340 1046 NSHMCKVCFESPTA---AILLP-CRHFCLCKSCSLAC----SECPICRTKIS 1089 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~---~vl~p-CgH~~~C~~C~~~~----~~CPiCr~~i~ 1089 (1096)
+...|.||++...+ ++.+| |||. ||..|.... ..||+||+.|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 44589999998776 78887 9998 999996543 56999999873
No 64
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.83 E-value=8.1e-06 Score=71.84 Aligned_cols=45 Identities=27% Similarity=0.757 Sum_probs=37.1
Q ss_pred CCcccccccccccccceEEeC-CCCcccchhhhhcC------CCCCCCccccc
Q 001340 1044 DPNSHMCKVCFESPTAAILLP-CRHFCLCKSCSLAC------SECPICRTKIS 1089 (1096)
Q Consensus 1044 ~~~~~~C~IC~~~~~~~vl~p-CgH~~~C~~C~~~~------~~CPiCr~~i~ 1089 (1096)
......|.||++...+.+.+| |||. ||..|.... ..||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 344558999999999999999 9998 999994332 47999999754
No 65
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.83 E-value=8.1e-06 Score=77.30 Aligned_cols=41 Identities=34% Similarity=0.936 Sum_probs=35.2
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcC-------CCCCCCcccccc
Q 001340 1049 MCKVCFESPTAAILLPCRHFCLCKSCSLAC-------SECPICRTKISD 1090 (1096)
Q Consensus 1049 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-------~~CPiCr~~i~~ 1090 (1096)
.|.||++...+.+++||||. ||..|.... ..||+||..+..
T Consensus 23 ~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 23 ECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp SCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 79999999999999999998 999995332 369999998764
No 66
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.83 E-value=5.6e-06 Score=75.98 Aligned_cols=45 Identities=29% Similarity=0.761 Sum_probs=36.2
Q ss_pred cccccccccccccc---eEEeCCCCcccchhhhhc----CCCCCCCcccccce
Q 001340 1046 NSHMCKVCFESPTA---AILLPCRHFCLCKSCSLA----CSECPICRTKISDR 1091 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~---~vl~pCgH~~~C~~C~~~----~~~CPiCr~~i~~~ 1091 (1096)
....|.||++.... ++.+||||. ||..|... ...||+||..|...
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPPP 90 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSCC
T ss_pred CCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCCC
Confidence 44589999987766 888999998 99999543 35699999988653
No 67
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.80 E-value=8.3e-06 Score=72.26 Aligned_cols=45 Identities=31% Similarity=0.803 Sum_probs=35.0
Q ss_pred cccccccccccc---cceEEeCCCCcccchhhhhc----CCCCCCCcccccce
Q 001340 1046 NSHMCKVCFESP---TAAILLPCRHFCLCKSCSLA----CSECPICRTKISDR 1091 (1096)
Q Consensus 1046 ~~~~C~IC~~~~---~~~vl~pCgH~~~C~~C~~~----~~~CPiCr~~i~~~ 1091 (1096)
....|.||++.. ..++++||+|. ||..|... ...||+||..|...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 455899997654 55677899998 99999543 35699999998753
No 68
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.77 E-value=7.4e-06 Score=72.13 Aligned_cols=44 Identities=30% Similarity=0.690 Sum_probs=34.5
Q ss_pred cccccccccccccc---eEEeCCCCcccchhhhhc----CCCCCCCcccccc
Q 001340 1046 NSHMCKVCFESPTA---AILLPCRHFCLCKSCSLA----CSECPICRTKISD 1090 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~---~vl~pCgH~~~C~~C~~~----~~~CPiCr~~i~~ 1090 (1096)
....|.||++.... ++.+||+|. ||..|... ...||+||+.|..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 34589999976544 588899998 99999543 3679999998864
No 69
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=9.2e-06 Score=71.19 Aligned_cols=47 Identities=23% Similarity=0.632 Sum_probs=36.6
Q ss_pred cccccccccccc---cceEEeCCCCcccchhhhhc----CCCCCCCcccccceee
Q 001340 1046 NSHMCKVCFESP---TAAILLPCRHFCLCKSCSLA----CSECPICRTKISDRLF 1093 (1096)
Q Consensus 1046 ~~~~C~IC~~~~---~~~vl~pCgH~~~C~~C~~~----~~~CPiCr~~i~~~i~ 1093 (1096)
....|.||++.. ..++++||+|. ||..|... ...||+||..|.....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 445899999875 45667799999 99999543 3579999999877544
No 70
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.75 E-value=1e-05 Score=74.00 Aligned_cols=44 Identities=27% Similarity=0.782 Sum_probs=37.0
Q ss_pred CCcccccccccccccceEEeC-CCCcccchhhhhcC------CCCCCCcccc
Q 001340 1044 DPNSHMCKVCFESPTAAILLP-CRHFCLCKSCSLAC------SECPICRTKI 1088 (1096)
Q Consensus 1044 ~~~~~~C~IC~~~~~~~vl~p-CgH~~~C~~C~~~~------~~CPiCr~~i 1088 (1096)
......|.||++...+.+++| |||. ||..|.... ..||+||..+
T Consensus 10 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 345568999999999999999 9999 999995332 4799999987
No 71
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.72 E-value=7.6e-06 Score=69.97 Aligned_cols=42 Identities=29% Similarity=0.645 Sum_probs=32.5
Q ss_pred cccccccc-cccce----EEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001340 1048 HMCKVCFE-SPTAA----ILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1090 (1096)
Q Consensus 1048 ~~C~IC~~-~~~~~----vl~pCgH~~~C~~C~~~~-----~~CPiCr~~i~~ 1090 (1096)
..|.||++ ...+. +++||||. ||..|.... ..||+||.++..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 47999999 33333 67899999 999995443 569999999864
No 72
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.71 E-value=1.2e-05 Score=76.80 Aligned_cols=41 Identities=39% Similarity=0.980 Sum_probs=36.0
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001340 1049 MCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1090 (1096)
Q Consensus 1049 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-----~~CPiCr~~i~~ 1090 (1096)
.|.||++...+.+.+||||. ||..|.... ..||+||..+..
T Consensus 17 ~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 17 QCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp BCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 79999999999999999999 999996554 369999998863
No 73
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.70 E-value=1.8e-05 Score=73.81 Aligned_cols=41 Identities=32% Similarity=0.714 Sum_probs=35.5
Q ss_pred ccccccccccceEE-eCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001340 1049 MCKVCFESPTAAIL-LPCRHFCLCKSCSLAC-----SECPICRTKISD 1090 (1096)
Q Consensus 1049 ~C~IC~~~~~~~vl-~pCgH~~~C~~C~~~~-----~~CPiCr~~i~~ 1090 (1096)
.|.||++...+.++ ++|||. ||..|.... ..||+||.++..
T Consensus 24 ~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 24 RCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp BCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 79999999999999 999999 999995432 479999998753
No 74
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.68 E-value=1.2e-05 Score=80.94 Aligned_cols=42 Identities=31% Similarity=0.737 Sum_probs=36.5
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccce
Q 001340 1049 MCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISDR 1091 (1096)
Q Consensus 1049 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-----~~CPiCr~~i~~~ 1091 (1096)
.|.||++...+.+++||||. ||..|.... ..||+||..+...
T Consensus 80 ~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 80 MCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp BCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred EeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 79999999999999999998 999995433 3699999998754
No 75
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.66 E-value=1.6e-05 Score=70.37 Aligned_cols=45 Identities=13% Similarity=0.315 Sum_probs=37.8
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhhc-----CCCCCCCcccccc
Q 001340 1045 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-----CSECPICRTKISD 1090 (1096)
Q Consensus 1045 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~-----~~~CPiCr~~i~~ 1090 (1096)
+....|.||++-..+.|++||||. ||..|... ...||+||..+..
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 455689999999999999999999 99999532 3569999999853
No 76
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.64 E-value=1.4e-05 Score=74.16 Aligned_cols=41 Identities=29% Similarity=0.866 Sum_probs=35.3
Q ss_pred ccccccccccceEEe-CCCCcccchhhhhcC----CCCCCCcccccc
Q 001340 1049 MCKVCFESPTAAILL-PCRHFCLCKSCSLAC----SECPICRTKISD 1090 (1096)
Q Consensus 1049 ~C~IC~~~~~~~vl~-pCgH~~~C~~C~~~~----~~CPiCr~~i~~ 1090 (1096)
.|.||++...+.+++ ||||. ||..|.... ..||+||..+..
T Consensus 24 ~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 24 RCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp BCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 799999999999888 99999 999995432 569999998874
No 77
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.62 E-value=1.3e-05 Score=81.45 Aligned_cols=41 Identities=32% Similarity=0.887 Sum_probs=35.1
Q ss_pred cccccccccccceEEe-CCCCcccchhhhhc-----CCCCCCCccccc
Q 001340 1048 HMCKVCFESPTAAILL-PCRHFCLCKSCSLA-----CSECPICRTKIS 1089 (1096)
Q Consensus 1048 ~~C~IC~~~~~~~vl~-pCgH~~~C~~C~~~-----~~~CPiCr~~i~ 1089 (1096)
..|.||++...+.+.+ ||||. ||..|... ...||+||..+.
T Consensus 55 ~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 3799999999999887 99998 99999533 356999999985
No 78
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.61 E-value=1.9e-05 Score=74.53 Aligned_cols=43 Identities=30% Similarity=0.722 Sum_probs=36.8
Q ss_pred ccccccccccccceEEe-CCCCcccchhhhhcC----CCCCCCcccccc
Q 001340 1047 SHMCKVCFESPTAAILL-PCRHFCLCKSCSLAC----SECPICRTKISD 1090 (1096)
Q Consensus 1047 ~~~C~IC~~~~~~~vl~-pCgH~~~C~~C~~~~----~~CPiCr~~i~~ 1090 (1096)
...|.||++...+.+.+ ||||. ||..|.... ..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 34799999999999998 99999 999995443 569999999875
No 79
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=3.3e-05 Score=65.47 Aligned_cols=39 Identities=23% Similarity=0.815 Sum_probs=32.6
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhhc-------CCCCCCC
Q 001340 1045 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-------CSECPIC 1084 (1096)
Q Consensus 1045 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~-------~~~CPiC 1084 (1096)
.....|.||++...+.+++||||. ||..|... ...||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 345589999999999999999999 99999432 3469998
No 80
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.55 E-value=3.1e-05 Score=74.27 Aligned_cols=40 Identities=30% Similarity=0.845 Sum_probs=35.9
Q ss_pred ccccccccccceEEe-CCCCcccchhhhhcC--CCCCCCccccc
Q 001340 1049 MCKVCFESPTAAILL-PCRHFCLCKSCSLAC--SECPICRTKIS 1089 (1096)
Q Consensus 1049 ~C~IC~~~~~~~vl~-pCgH~~~C~~C~~~~--~~CPiCr~~i~ 1089 (1096)
.|.||++...+.+++ ||||. ||..|.... ..||+||..+.
T Consensus 24 ~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 24 RCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp SCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCChHhhCccEeCCCCCH-HHHHHHHHHhcCCCcCCCCcCc
Confidence 799999999999999 99999 999997655 56999999885
No 81
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=2.5e-05 Score=64.77 Aligned_cols=38 Identities=32% Similarity=0.883 Sum_probs=32.2
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcC-------CCCCCC
Q 001340 1046 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-------SECPIC 1084 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-------~~CPiC 1084 (1096)
....|.||++...+.+++||||. ||..|.... ..||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 45589999999999999999999 999995432 569998
No 82
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=97.48 E-value=0.00012 Score=64.24 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH----------hhHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcC
Q 001340 897 ARKQREAALEAALAEKEFLEDEYR----------KKVEESKRREEALENDLANMWVLVAKLKKEVGS 953 (1096)
Q Consensus 897 a~~erq~aLE~el~~k~~~eeEl~----------~~leE~kkk~~~Le~el~~~~~l~~~Lkke~~~ 953 (1096)
+++++|++||+||++|+.+.+||. ++|.|+++++.+|+.|+ .+|++++.+
T Consensus 11 ~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~-------~~l~~~~ee 70 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHV-------RQLQERMEL 70 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 778999999999999999999997 89999999999999999 888888765
No 83
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.47 E-value=4.2e-05 Score=73.45 Aligned_cols=45 Identities=24% Similarity=0.707 Sum_probs=38.1
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001340 1045 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1090 (1096)
Q Consensus 1045 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-----~~CPiCr~~i~~ 1090 (1096)
.....|.||++...+.+.+||||. ||..|.... ..||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 345589999999999999999999 999995443 379999998865
No 84
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.37 E-value=3.8e-05 Score=73.09 Aligned_cols=43 Identities=30% Similarity=0.692 Sum_probs=33.1
Q ss_pred cccccccccccc------------------eEEeCCCCcccchhhhhc---------CCCCCCCcccccce
Q 001340 1048 HMCKVCFESPTA------------------AILLPCRHFCLCKSCSLA---------CSECPICRTKISDR 1091 (1096)
Q Consensus 1048 ~~C~IC~~~~~~------------------~vl~pCgH~~~C~~C~~~---------~~~CPiCr~~i~~~ 1091 (1096)
..|.||++.... ++++||+|. ||..|... -..||+||..+...
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 479999998643 348899998 99999432 34699999988653
No 85
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.32 E-value=0.015 Score=63.33 Aligned_cols=90 Identities=20% Similarity=0.169 Sum_probs=53.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccCccccccCcccccccCCCCCchhHH
Q 001340 813 AGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLK 892 (1096)
Q Consensus 813 ~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qiq~v~~dar~~lq~l~~~~~e~l~~~~~~~~~~~~~~~~~~w~~~~~~K 892 (1096)
-.++..+..+..+++.++...+..+..++.++..|. . .+....+.
T Consensus 52 ~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-~----------------------------------~kE~~aL~ 96 (256)
T 3na7_A 52 EEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-S----------------------------------ERELRSLN 96 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-S----------------------------------SSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-C----------------------------------HHHHHHHH
Confidence 334555555555566666666666666665443222 1 22334566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 001340 893 LELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDL 937 (1096)
Q Consensus 893 ~e~~a~~erq~aLE~el~~k~~~eeEl~~~leE~kkk~~~Le~el 937 (1096)
.++.....++..||.++.+....-+++...+++++.+...++.++
T Consensus 97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l 141 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA 141 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776666555555566666666666666666
No 86
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.31 E-value=6.6e-05 Score=71.74 Aligned_cols=41 Identities=29% Similarity=0.750 Sum_probs=35.9
Q ss_pred ccccccccccceEEeCCCCcccchhhhhc-----CCCCCCCcccccc
Q 001340 1049 MCKVCFESPTAAILLPCRHFCLCKSCSLA-----CSECPICRTKISD 1090 (1096)
Q Consensus 1049 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~-----~~~CPiCr~~i~~ 1090 (1096)
.|.||++...+.+.+||||. ||..|... ...||+||..+..
T Consensus 25 ~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 25 SCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp BCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 79999999999999999999 99999532 3569999999764
No 87
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.25 E-value=0.00015 Score=79.21 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=38.2
Q ss_pred CCcccccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001340 1044 DPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1090 (1096)
Q Consensus 1044 ~~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-----~~CPiCr~~i~~ 1090 (1096)
.+....|+||++-..+.|++||||. ||..|.... ..||+||.++..
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3456689999999999999999999 999995432 339999998863
No 88
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.18 E-value=0.00013 Score=68.13 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=37.9
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhhc----CCCCCCCcccccc
Q 001340 1045 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA----CSECPICRTKISD 1090 (1096)
Q Consensus 1045 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~----~~~CPiCr~~i~~ 1090 (1096)
+....|+||++-.++.|++||||. ||..|... ...||+||.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 445689999999999999999999 99999433 3569999998764
No 89
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.14 E-value=0.00017 Score=65.39 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=38.0
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhhc----CCCCCCCcccccc
Q 001340 1045 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA----CSECPICRTKISD 1090 (1096)
Q Consensus 1045 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~----~~~CPiCr~~i~~ 1090 (1096)
+....|+||++-.++-|++||||. ||..|... ...||+||.++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 345689999999999999999999 99999433 3679999998754
No 90
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.13 E-value=0.0001 Score=71.39 Aligned_cols=44 Identities=27% Similarity=0.810 Sum_probs=35.8
Q ss_pred cccccccccccccce-------EEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001340 1046 NSHMCKVCFESPTAA-------ILLPCRHFCLCKSCSLAC----SECPICRTKISD 1090 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~-------vl~pCgH~~~C~~C~~~~----~~CPiCr~~i~~ 1090 (1096)
+...|.||++...+. +++||||. ||..|.... ..||+||..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 345899999987765 89999998 999995432 569999998874
No 91
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.13 E-value=0.00017 Score=67.12 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=37.6
Q ss_pred CcccccccccccccceEEeCCC-Ccccchhhhhc----CCCCCCCcccccc
Q 001340 1045 PNSHMCKVCFESPTAAILLPCR-HFCLCKSCSLA----CSECPICRTKISD 1090 (1096)
Q Consensus 1045 ~~~~~C~IC~~~~~~~vl~pCg-H~~~C~~C~~~----~~~CPiCr~~i~~ 1090 (1096)
+....|+||++-.++.|++||| |. ||..|... ...||+||.++..
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 3455899999999999999999 98 99999533 3569999998764
No 92
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.08 E-value=0.0004 Score=71.54 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=40.2
Q ss_pred CCCCCcccccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001340 1041 GNGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1090 (1096)
Q Consensus 1041 ~~~~~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-----~~CPiCr~~i~~ 1090 (1096)
....+....|+||++-..+.|++||||. ||..|.... ..||+||.++..
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 4455677899999999999999999998 999994322 259999998764
No 93
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.08 E-value=0.00026 Score=63.43 Aligned_cols=42 Identities=19% Similarity=0.590 Sum_probs=31.0
Q ss_pred cccccccccccc--------------eEEe-CCCCcccchhhhhc----CCCCCCCcccccc
Q 001340 1048 HMCKVCFESPTA--------------AILL-PCRHFCLCKSCSLA----CSECPICRTKISD 1090 (1096)
Q Consensus 1048 ~~C~IC~~~~~~--------------~vl~-pCgH~~~C~~C~~~----~~~CPiCr~~i~~ 1090 (1096)
..|.||++.... ++.+ +|+|. ||..|... ...||+||+.+..
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCcccChhhhccCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence 368888887654 4444 59999 99999543 2569999998753
No 94
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.05 E-value=7.1e-05 Score=74.40 Aligned_cols=43 Identities=19% Similarity=0.491 Sum_probs=36.1
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccc
Q 001340 1045 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKI 1088 (1096)
Q Consensus 1045 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-----~~CPiCr~~i 1088 (1096)
.....|.||++-..+.|.++|||. ||..|.... ..||+||.++
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 345589999999999999999999 999995443 3699999975
No 95
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.96 E-value=0.00027 Score=68.42 Aligned_cols=49 Identities=24% Similarity=0.704 Sum_probs=38.3
Q ss_pred cccccccccccccce-------EEeCCCCcccchhhhhc----CCCCCCCccccc--ceeecc
Q 001340 1046 NSHMCKVCFESPTAA-------ILLPCRHFCLCKSCSLA----CSECPICRTKIS--DRLFAF 1095 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~-------vl~pCgH~~~C~~C~~~----~~~CPiCr~~i~--~~i~if 1095 (1096)
+...|.||++..... ++.+|||. ||..|... ...||+||..|. ..+++|
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 445799999977664 88999999 99999543 467999999876 345555
No 96
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.78 E-value=0.00051 Score=70.04 Aligned_cols=46 Identities=24% Similarity=0.662 Sum_probs=38.7
Q ss_pred CCcccccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001340 1044 DPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1090 (1096)
Q Consensus 1044 ~~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-----~~CPiCr~~i~~ 1090 (1096)
......|.||++-..+.+..||||. ||..|.... ..||+||..+..
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3455689999999999999999999 999995443 479999998875
No 97
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.68 E-value=0.14 Score=72.30 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001340 762 SQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 829 (1096)
Q Consensus 762 ~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~E 829 (1096)
.=...++.|+.+...+..|++.|+.+.+.......-|..|.+.+..|..-+.+.+..+..+...|-.+
T Consensus 2039 ~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2039 ALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHH
Confidence 33455667777777888888888888888888888888899999999999999999999998888776
No 98
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.61 E-value=0.00088 Score=63.26 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=31.7
Q ss_pred ccccccccccc------------------ceEEeCCCCcccchhhhhc----CCCCCCCccccc
Q 001340 1048 HMCKVCFESPT------------------AAILLPCRHFCLCKSCSLA----CSECPICRTKIS 1089 (1096)
Q Consensus 1048 ~~C~IC~~~~~------------------~~vl~pCgH~~~C~~C~~~----~~~CPiCr~~i~ 1089 (1096)
..|.||++... .++++||+|. ||..|... -..||+||+.+.
T Consensus 38 d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 38 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCccCChhHhCcCchhhccccccCCccceEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcce
Confidence 36999987654 2577899999 99999544 356999999863
No 99
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.42 E-value=0.025 Score=73.19 Aligned_cols=74 Identities=20% Similarity=0.149 Sum_probs=51.0
Q ss_pred HHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001340 760 VQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 836 (1096)
Q Consensus 760 ~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~ 836 (1096)
+..+..|.+.++.+...|.++...|..+++++..|-....+....+.. +|.++|.+|+.+|..|+.+++.....
T Consensus 972 le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 972 LRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666777777777777777777777766666666555553 55578888888888888877666533
No 100
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.40 E-value=0.45 Score=51.59 Aligned_cols=92 Identities=13% Similarity=0.136 Sum_probs=53.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHh
Q 001340 683 VTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQS 762 (1096)
Q Consensus 683 v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~ 762 (1096)
+..|..++....-.+.....+...++.++...+.++..++.++...+.++.. ..+. ..+..+.
T Consensus 34 l~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~------v~~~------kE~~aL~----- 96 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE------IKSE------RELRSLN----- 96 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CSSS------SHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cCCH------HHHHHHH-----
Confidence 3334444444434444455666677788888888888889999998888822 2211 1222332
Q ss_pred hHHHHHHHHHHHHHhHHhhhhHHHHHHHHHH
Q 001340 763 QETENEKLKLEHVQLSEENSGLHVQNQKLAE 793 (1096)
Q Consensus 763 Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~ 793 (1096)
.||+.++.++..|.++...+..+.+.+..
T Consensus 97 --kEie~~~~~i~~lE~eile~~e~ie~~~~ 125 (256)
T 3na7_A 97 --IEEDIAKERSNQANREIENLQNEIKRKSE 125 (256)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555544
No 101
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.25 E-value=0.0018 Score=59.52 Aligned_cols=41 Identities=17% Similarity=0.378 Sum_probs=33.7
Q ss_pred cccccccccccccceEEeC-CCCcccchhhhhc----------CCCCCC--Cccc
Q 001340 1046 NSHMCKVCFESPTAAILLP-CRHFCLCKSCSLA----------CSECPI--CRTK 1087 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~vl~p-CgH~~~C~~C~~~----------~~~CPi--Cr~~ 1087 (1096)
....|+||++-..+.|+.| |||. ||..|... ...||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3458999999999999997 9998 99999422 237999 9855
No 102
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.24 E-value=0.00073 Score=64.90 Aligned_cols=40 Identities=18% Similarity=0.369 Sum_probs=0.0
Q ss_pred ccccccccccc------------------eEEeCCCCcccchhhhhc----CCCCCCCccccc
Q 001340 1049 MCKVCFESPTA------------------AILLPCRHFCLCKSCSLA----CSECPICRTKIS 1089 (1096)
Q Consensus 1049 ~C~IC~~~~~~------------------~vl~pCgH~~~C~~C~~~----~~~CPiCr~~i~ 1089 (1096)
.|.||++...+ ++++||+|. ||..|... -..||+||+.+.
T Consensus 50 ~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 50 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp ---------------------------------------------------------------
T ss_pred cCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCeee
Confidence 79999886543 345699999 99999654 256999999853
No 103
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.82 E-value=0.0016 Score=59.66 Aligned_cols=41 Identities=24% Similarity=0.674 Sum_probs=29.5
Q ss_pred cccccccccccccce--E-EeCCCCcccchhhhhcC------------CCCCC--Cccc
Q 001340 1046 NSHMCKVCFESPTAA--I-LLPCRHFCLCKSCSLAC------------SECPI--CRTK 1087 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~--v-l~pCgH~~~C~~C~~~~------------~~CPi--Cr~~ 1087 (1096)
+...|.||++..... + +.||||. ||..|.... ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 345799999875442 2 2389999 999993221 35999 9988
No 104
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.64 E-value=0.82 Score=47.10 Aligned_cols=38 Identities=8% Similarity=-0.078 Sum_probs=20.9
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHhhhc
Q 001340 594 PIGGMTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQS 631 (1096)
Q Consensus 594 ~~~~~~~d~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~ 631 (1096)
|+.....|++.--++........+.+....|..|.+.+
T Consensus 3 ~~f~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesS 40 (189)
T 2v71_A 3 MDFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGS 40 (189)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666666666555555444444
No 105
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.0036 Score=67.76 Aligned_cols=44 Identities=18% Similarity=0.432 Sum_probs=35.7
Q ss_pred cccccccccccccceEEe-CCCCcccchhhhhcC------CCCCC--Ccccccc
Q 001340 1046 NSHMCKVCFESPTAAILL-PCRHFCLCKSCSLAC------SECPI--CRTKISD 1090 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~vl~-pCgH~~~C~~C~~~~------~~CPi--Cr~~i~~ 1090 (1096)
....|+||++-.++-|.. .|||. ||..|...+ ..||+ |+..+..
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 345899999999999985 99998 999995433 24999 9997653
No 106
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.52 E-value=1.1 Score=63.66 Aligned_cols=189 Identities=14% Similarity=0.129 Sum_probs=82.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhh
Q 001340 635 PDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK 714 (1096)
Q Consensus 635 ~~~~~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a 714 (1096)
|...=..+.--..-+..|..++.....|+..-.. -..+...+|..|+.+|.++..+|++++.+...+=+++...
T Consensus 1894 P~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~------KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~ 1967 (3245)
T 3vkg_A 1894 PRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLK------KLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD 1967 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444444554455555555555555555421110 1123445566666666666666666644333332222211
Q ss_pred --------------hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHh
Q 001340 715 --------------CSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEE 780 (1096)
Q Consensus 715 --------------~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee 780 (1096)
+.+..+-.+++...|....+.|+ .+... .-..+.+.++++.+....++++..+.+...|.+.
T Consensus 1968 ~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~--~A~Pa--~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~ 2043 (3245)
T 3vkg_A 1968 QQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLE--KAEPT--GPLREEVEQLENAANELKLKQDEIVATITALEKS 2043 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222333333333322222 22222 2344455555555555555555555555555555
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 001340 781 NSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAA 833 (1096)
Q Consensus 781 ~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~ 833 (1096)
...|+.+.+.+..|...-++-+...+..+..-.+=+..|..|+.|..+.++..
T Consensus 2044 l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l 2096 (3245)
T 3vkg_A 2044 IATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENF 2096 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Confidence 55555555554444444444444444444333334444555555555444443
No 107
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.43 E-value=0.16 Score=65.87 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=24.8
Q ss_pred HHHhhhhHHHHHHH-hcCCceeEEeeccCCCCcccc
Q 001340 156 EVYDVAARPVVKAA-MEGVNGTVFAYGVTSSGKTHT 190 (1096)
Q Consensus 156 ~Vy~~~~~plV~~~-l~G~N~tIfaYGqTgSGKT~T 190 (1096)
.||. ++......+ -.+.|-||+.-|-+|||||.+
T Consensus 138 Hifa-iA~~Ay~~m~~~~~~QsIiisGESGAGKTe~ 172 (1080)
T 2dfs_A 138 HIFA-VAEEAYKQMARDERNQSIIVSGESGAGKTVS 172 (1080)
T ss_dssp CHHH-HHHHHHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred cHHH-HHHHHHHHHHhcCCCcEEEEcCCCCCCccch
Confidence 4665 333333333 379999999999999999976
No 108
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.42 E-value=0.01 Score=52.97 Aligned_cols=45 Identities=20% Similarity=0.718 Sum_probs=33.5
Q ss_pred cccccccccccc--cceEEeCCC-----CcccchhhhhcC------CCCCCCcccccce
Q 001340 1046 NSHMCKVCFESP--TAAILLPCR-----HFCLCKSCSLAC------SECPICRTKISDR 1091 (1096)
Q Consensus 1046 ~~~~C~IC~~~~--~~~vl~pCg-----H~~~C~~C~~~~------~~CPiCr~~i~~~ 1091 (1096)
....|.||++.. .+.+++||. |. |...|...- ..||+||..+.-.
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 345899999754 456789997 98 999994322 4699999987643
No 109
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.28 E-value=0.97 Score=46.55 Aligned_cols=42 Identities=33% Similarity=0.369 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 001340 892 KLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDL 937 (1096)
Q Consensus 892 K~e~~a~~erq~aLE~el~~k~~~eeEl~~~leE~kkk~~~Le~el 937 (1096)
..-+....++.+-||.|+.+|..+..+ ++-++....+|..|+
T Consensus 136 e~kln~aiEr~alLE~El~EKe~l~~~----~QRLkdE~rDLk~El 177 (189)
T 2v71_A 136 EQRLNQAIERNAFLESELDEKESLLVS----VQRLKDEARDLRQEL 177 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC----C--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 334456667778888888777766555 333333334444444
No 110
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=94.94 E-value=0.009 Score=55.12 Aligned_cols=42 Identities=24% Similarity=0.711 Sum_probs=29.4
Q ss_pred cccccccccc-ceEEeCCCCcccchhhhhc-----CCCCCCCcccccce
Q 001340 1049 MCKVCFESPT-AAILLPCRHFCLCKSCSLA-----CSECPICRTKISDR 1091 (1096)
Q Consensus 1049 ~C~IC~~~~~-~~vl~pCgH~~~C~~C~~~-----~~~CPiCr~~i~~~ 1091 (1096)
.|.+|--.-. -.-++||.|. ||..|+.. ...||+|+.+|...
T Consensus 3 fC~~C~~Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 4777733221 1234699996 99999843 46799999998764
No 111
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.37 E-value=4.9 Score=40.53 Aligned_cols=112 Identities=19% Similarity=0.109 Sum_probs=69.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHh
Q 001340 683 VTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQS 762 (1096)
Q Consensus 683 v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~ 762 (1096)
..+|+.+.-|..+.+.-..+.++-|++.+...+.....|++++..|..+|.
T Consensus 29 ~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~----------------------------- 79 (168)
T 3o0z_A 29 AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE----------------------------- 79 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Confidence 344555555555555555556777888888888888899999988888881
Q ss_pred hHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001340 763 QETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 829 (1096)
Q Consensus 763 Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~E 829 (1096)
.=+.......+-...|..++..|..|....++.-..+..+.+.|.++|..|+.+..-+.-+
T Consensus 80 ------qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid 140 (168)
T 3o0z_A 80 ------AERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEID 140 (168)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 1111222223333334445555555555555556666667777777888887777777743
No 112
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=92.96 E-value=0.034 Score=46.99 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=35.1
Q ss_pred cccccccccccceEEe-CCCCcccchhhhhcC----CCCCCCccccc
Q 001340 1048 HMCKVCFESPTAAILL-PCRHFCLCKSCSLAC----SECPICRTKIS 1089 (1096)
Q Consensus 1048 ~~C~IC~~~~~~~vl~-pCgH~~~C~~C~~~~----~~CPiCr~~i~ 1089 (1096)
..|.||++-..+.|+. +|||. ||..|.... ..||+++.++.
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred EEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCC
Confidence 4799999999999999 99998 999995443 56999999864
No 113
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.84 E-value=0.027 Score=57.00 Aligned_cols=52 Identities=15% Similarity=0.060 Sum_probs=36.0
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
..++||.....+..|..+++ .+..++.++--.-...++-||++|+|||+.+.
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALL-TIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHH-HHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hhCccccccCCCHHHHHHHH-HHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 34788887665556777776 44555555433334567889999999999874
No 114
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=92.78 E-value=1.3 Score=40.51 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=27.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhHHHHHHhhhh
Q 001340 917 DEYRKKVEESKRREEALENDLANMWVLVAKLKKE 950 (1096)
Q Consensus 917 eEl~~~leE~kkk~~~Le~el~~~~~l~~~Lkke 950 (1096)
.+|++.++++......|+-++.|||..+..++..
T Consensus 59 ~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 59 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555668888888888999999999888888764
No 115
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.34 E-value=0.74 Score=55.48 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=10.5
Q ss_pred HhhHHHHHHHHHHHHHhHHhhhhHH
Q 001340 761 QSQETENEKLKLEHVQLSEENSGLH 785 (1096)
Q Consensus 761 ~~Q~~Eie~lk~e~~~L~Ee~~~L~ 785 (1096)
..++..+++++++...+..+..+|.
T Consensus 554 ~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 554 DNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433333
No 116
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.53 E-value=0.066 Score=54.98 Aligned_cols=50 Identities=16% Similarity=0.084 Sum_probs=33.6
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHHhcCCc-eeEEeeccCCCCccccc
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN-GTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N-~tIfaYGqTgSGKT~Tm 191 (1096)
.++||.....+..+..+++ .+..++...-.++. ..|+-||++|+||||.+
T Consensus 21 ~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIR-FAERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHH-HHHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred cCCHhhccCCChhHHHHHH-HHHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 4678876655546666776 33445554433332 67899999999999986
No 117
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.59 E-value=0.09 Score=58.54 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=34.2
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.++||.+......+..++. .+..++...-.+....|+-||++|+||||.+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 3678775543335555666 44556655544445678899999999999874
No 118
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=90.39 E-value=2.7 Score=37.33 Aligned_cols=60 Identities=25% Similarity=0.290 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001340 751 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 830 (1096)
Q Consensus 751 e~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~El 830 (1096)
+.++.|.++++.=+..|.-|+-++..|.++|..|..+++.+.. ....|..+|.+|..|.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~---------------------~~~~L~~en~qLk~E~ 64 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH---------------------QREELERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------hhHHHHHHHHHHHHHH
Confidence 3445556666666666666677777777777777776666666 5566666777666664
Q ss_pred H
Q 001340 831 L 831 (1096)
Q Consensus 831 e 831 (1096)
.
T Consensus 65 ~ 65 (81)
T 2jee_A 65 N 65 (81)
T ss_dssp H
T ss_pred H
Confidence 3
No 119
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.85 E-value=4.8 Score=48.33 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=19.3
Q ss_pred HhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 702 ADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 702 ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.++..+++.+...+..+..++.+++..++..
T Consensus 463 ~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~ 493 (597)
T 3oja_B 463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRY 493 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 4555566666666666666666666666555
No 120
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=89.19 E-value=19 Score=35.89 Aligned_cols=106 Identities=15% Similarity=0.227 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHH
Q 001340 603 MDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQT 682 (1096)
Q Consensus 603 ~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~ 682 (1096)
|+.|-.|+|.. .|-++++-. |.+ + +..++.--++.++..+.|+...-..-. -+...
T Consensus 2 ~~~lE~qlkea-ae~ad~Kye-----Eva-R-----------~E~dLEraEERae~aE~k~~eLEeeL~------~v~~n 57 (155)
T 2efr_A 2 MKQLEDKVEEL-LSKNYHLEN-----EVA-R-----------LKKLLERAEERAELSEGKSAELEEELK------TVTNN 57 (155)
T ss_dssp HHHHHHHHHHH-HHHHHHHHH-----HHH-H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
T ss_pred HHHHHHHHHHH-HHHhHHHHH-----HHH-H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHh
Confidence 56788898887 444443222 222 1 666666677777777776641111000 00111
Q ss_pred HHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 683 VTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 683 v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
+..|...-++.+-.-+.-....+.|.++|.+++.++..+...|..|+..+
T Consensus 58 lKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~i 107 (155)
T 2efr_A 58 LKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSI 107 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222211111111133566777777777777776666666666555
No 121
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=87.58 E-value=19 Score=33.91 Aligned_cols=22 Identities=41% Similarity=0.350 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH
Q 001340 897 ARKQREAALEAALAEKEFLEDE 918 (1096)
Q Consensus 897 a~~erq~aLE~el~~k~~~eeE 918 (1096)
...++.+-||.||.+|..+..+
T Consensus 88 ~aiErnalLE~El~EKe~L~~~ 109 (111)
T 2v66_B 88 QAIERNAFLESELDEKESLLVS 109 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3446667777777777766543
No 122
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=87.35 E-value=0.98 Score=39.18 Aligned_cols=50 Identities=22% Similarity=0.146 Sum_probs=45.3
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001340 682 TVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQ 731 (1096)
Q Consensus 682 ~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~ 731 (1096)
.|.+|+..|.++.=++..+.+-++.++.+|++++.++.+|+.++|.+++.
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 47888889999999999999999999999999999999999999988764
No 123
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=87.20 E-value=14 Score=35.52 Aligned_cols=82 Identities=17% Similarity=0.190 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001340 763 QETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASA-------AAVELKNLAGEVTKLSLQNAKLEKELLAARE 835 (1096)
Q Consensus 763 Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~a-------a~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~ 835 (1096)
-...+..|+..+..|..++..|..+++.-.+...-+-++... +..+++++..++...+..|..|..+-.....
T Consensus 32 ~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~ 111 (129)
T 2fxo_A 32 SEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLED 111 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667777777777777666665544443334444333 3455666666666666666666666555555
Q ss_pred HHHHHHHHH
Q 001340 836 SMHSRGAAM 844 (1096)
Q Consensus 836 ~~~~~e~qi 844 (1096)
.+..++.+|
T Consensus 112 e~~~Lk~~l 120 (129)
T 2fxo_A 112 ECSELKRDI 120 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
No 124
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=87.10 E-value=6.4 Score=35.44 Aligned_cols=79 Identities=19% Similarity=0.208 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccCccccccCcccccccCCCCC
Q 001340 808 ELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLD 887 (1096)
Q Consensus 808 qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qiq~v~~dar~~lq~l~~~~~e~l~~~~~~~~~~~~~~~~~~w~~ 887 (1096)
|+++|..+|..+..+|.+|..|+...+..+..|....
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~Ky------------------------------------------- 37 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL------------------------------------------- 37 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------
Confidence 4678888999999999999999999998877665211
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 001340 888 PDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDL 937 (1096)
Q Consensus 888 ~~~~K~e~~a~~erq~aLE~el~~k~~~eeEl~~~leE~kkk~~~Le~el 937 (1096)
.....+-..+|.++...+..-+++....-+++.+.+.|..|+
T Consensus 38 --------E~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 38 --------QEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp --------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 122223336677777767666666666677777777777777
No 125
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=86.58 E-value=28 Score=34.75 Aligned_cols=117 Identities=19% Similarity=0.140 Sum_probs=65.4
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHH-------HHHHH
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKL-------KLEHV 775 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~l-------k~e~~ 775 (1096)
|.....+++..++..+.+|+.+|...-..+.. +| ..++...+-. .....+|..| +....
T Consensus 29 dLEraEERae~aE~k~~eLEeeL~~v~~nlKs-LE----------~seekasqrE---d~yEeqIk~L~~kLKEAE~RAE 94 (155)
T 2efr_A 29 LLERAEERAELSEGKSAELEEELKTVTNNLKS-LE----------AQAEKYSQKE---DKYEEEIKVLSDKLKEAETRAE 94 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----------HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ch----------hhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677777777777776665555511 11 1111111111 1122222222 22222
Q ss_pred HhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 001340 776 QLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAA 833 (1096)
Q Consensus 776 ~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~ 833 (1096)
.-.-...+|...++.|-++.+..|.....+..+|.....+++-+...+..|..++...
T Consensus 95 ~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 95 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 3334455666667777777777777777777777777777777777777777765544
No 126
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=86.17 E-value=9.1 Score=34.94 Aligned_cols=82 Identities=20% Similarity=0.146 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001340 751 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 830 (1096)
Q Consensus 751 e~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~El 830 (1096)
+.+..|+.++..++.-..-|++++..|..+...+..+ ....+......++.+|...|..+..++.+|..|+
T Consensus 9 e~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~---------~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~ 79 (93)
T 3s4r_A 9 VELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQ---------GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVER 79 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788888888888888888877776665555432 1224556678899999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 001340 831 LAARESMHSRG 841 (1096)
Q Consensus 831 e~~k~~~~~~e 841 (1096)
...++.+..+.
T Consensus 80 dnl~~~~~~~k 90 (93)
T 3s4r_A 80 DNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887776654
No 127
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=86.13 E-value=0.26 Score=54.18 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=31.4
Q ss_pred cceecCCCCChhHHHhhhhHHHHHHHhc--CCc--eeEEeeccCCCCccccc
Q 001340 144 FDRVFGPHANSQEVYDVAARPVVKAAME--GVN--GTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 144 FD~VF~~~~~q~~Vy~~~~~plV~~~l~--G~N--~tIfaYGqTgSGKT~Tm 191 (1096)
||.+|+..---..+.+.++..++...+. |.. ..|+-||++|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4555544434456666677777776654 222 36788999999999864
No 128
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=86.01 E-value=1.5 Score=41.28 Aligned_cols=100 Identities=22% Similarity=0.206 Sum_probs=52.1
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHH
Q 001340 600 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDM 679 (1096)
Q Consensus 600 ~d~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~ 679 (1096)
-||.|.|+.++-.|.+.+..-...-+.|.+.=-..-.+...|++.|..++..-+..+..|.+....... ++
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~---------~v 75 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKR---------DV 75 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH
Confidence 366666666655555555444444444433322222334567777888888777777777777765443 55
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhHHHHH
Q 001340 680 QQTVTRLMSQCNEKAFELEIKSADNRILQ 708 (1096)
Q Consensus 680 ~~~v~~L~~~l~e~~~ele~k~ae~~~lq 708 (1096)
+.++.+|....+.-.-+|.....||..|.
T Consensus 76 q~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 76 QEQMAVLMQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 66677776666655555555555555543
No 129
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=85.91 E-value=9.1 Score=35.76 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=16.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 705 RILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 705 ~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
...++.|..+...|.+|+.++..++..+
T Consensus 34 ~~AEeaL~~Kq~~idelk~ei~q~~~~l 61 (110)
T 2v4h_A 34 QQAEEALVAKQELIDKLKEEAEQHKIVM 61 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666655544
No 130
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=85.70 E-value=26 Score=33.69 Aligned_cols=74 Identities=22% Similarity=0.251 Sum_probs=35.3
Q ss_pred HhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhh
Q 001340 702 ADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEEN 781 (1096)
Q Consensus 702 ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~ 781 (1096)
.+...|+.||+.-..-+.+.+....+|..+- .+.+..+.++...+......+..|..++..|..+.
T Consensus 48 ~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k--------------~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~ 113 (129)
T 2fxo_A 48 QEKNDLQLQVQAEQDNLADAEERCDQLIKNK--------------IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDEC 113 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444445554444444333 12334445555444444444455555555555555
Q ss_pred hhHHHHHH
Q 001340 782 SGLHVQNQ 789 (1096)
Q Consensus 782 ~~L~~e~~ 789 (1096)
..|..+++
T Consensus 114 ~~Lk~~le 121 (129)
T 2fxo_A 114 SELKRDID 121 (129)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 131
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=85.29 E-value=3.8 Score=45.26 Aligned_cols=121 Identities=9% Similarity=0.139 Sum_probs=81.3
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCCCCCcceecceecCCCC-ChhHHHhhhhHHHHHHHh-cCCce
Q 001340 98 SGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHA-NSQEVYDVAARPVVKAAM-EGVNG 175 (1096)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~VF~~~~-~q~~Vy~~~~~plV~~~l-~G~N~ 175 (1096)
-+|.||+++=+-+-. .+....+.....+|. .......|.|++|+.... +-.+++..-.+..++-++ .+.|+
T Consensus 57 lKG~IRcFAYi~~~~-----~p~~~~idY~~~~It--~~~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~Nf 129 (333)
T 4etp_B 57 QKGTMRVYAYVMEQN-----LPENLLFDYENGVIT--QGLSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNF 129 (333)
T ss_dssp HHTCCEEEEEECCSS-----CCSSCEEETTTTEEE--C--CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCE
T ss_pred hcCcEEEEEEECccc-----CCccEEEecccceEe--ecCCcceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCe
Confidence 357888888776622 122333433344443 233567899999996554 355666667888999999 99999
Q ss_pred eEEeeccCCCCcccccCCCCCCCCchHHHHHHHHHHhhcC---CCCeeEEEEeeeeeecce-eeecCCCC
Q 001340 176 TVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT---PGREFLLRVSYLEIYNEV-INDLLDPT 241 (1096)
Q Consensus 176 tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~---~~~~~~v~vS~lEIYnE~-i~DLL~~~ 241 (1096)
.||..|..- .+..-..|+..+... -...|.+.+-|+.+-++. ..|||.+.
T Consensus 130 slIsis~~~----------------w~~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~ 183 (333)
T 4etp_B 130 NLISLSTTP----------------HGSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDY 183 (333)
T ss_dssp EEEEEESSC----------------CCHHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC-
T ss_pred eEEEecCCC----------------cHHHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhccc
Confidence 999998641 123455566666554 235789999998888776 79999875
No 132
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=85.01 E-value=20 Score=34.16 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001340 803 SAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 841 (1096)
Q Consensus 803 ~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e 841 (1096)
.....++.+|..+|..+..+|++|..++..++..+..+.
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk 54 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 54 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678899999999999999999999999998887775
No 133
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.58 E-value=24 Score=32.34 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=9.1
Q ss_pred HHHhhHHHHHHHHHHHH
Q 001340 816 VTKLSLQNAKLEKELLA 832 (1096)
Q Consensus 816 v~kL~~~n~qL~~Ele~ 832 (1096)
-.+++..|.+|..+|..
T Consensus 78 ~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 78 KYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34445556666665543
No 134
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.40 E-value=1 Score=52.62 Aligned_cols=74 Identities=19% Similarity=0.313 Sum_probs=49.8
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHH-HHhc--C--CceeEEeeccCCCCcccccC--------------CC---CCCC
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAME--G--VNGTVFAYGVTSSGKTHTMH--------------GD---QNSP 198 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~--G--~N~tIfaYGqTgSGKT~Tm~--------------G~---~~~~ 198 (1096)
.-+||.|-+-+.--+.+.+.+..|+.. ..+. | +--.|+-||++|+|||++.- |+ ....
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~v 256 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYI 256 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCS
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhccc
Confidence 357888888776667777777777652 3333 2 23468999999999997642 11 2345
Q ss_pred CchHHHHHHHHHHhhc
Q 001340 199 GIIPLAIKDVFSIIQD 214 (1096)
Q Consensus 199 GIipr~~~~LF~~i~~ 214 (1096)
|--.+.++.+|.....
T Consensus 257 Gese~~ir~lF~~A~~ 272 (434)
T 4b4t_M 257 GEGAKLVRDAFALAKE 272 (434)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHh
Confidence 6677778888876654
No 135
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=83.60 E-value=39 Score=34.00 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001340 798 AKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 834 (1096)
Q Consensus 798 ~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k 834 (1096)
.......+..+++.+.....++..+|.+|.+.+....
T Consensus 95 lq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 95 LQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSE 131 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666666777777777666544433
No 136
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=82.85 E-value=0.28 Score=54.97 Aligned_cols=44 Identities=23% Similarity=0.543 Sum_probs=30.7
Q ss_pred cccccccccccc------eE--EeCCCCcccchhhhhc----C-----------CCCCCCccccccee
Q 001340 1048 HMCKVCFESPTA------AI--LLPCRHFCLCKSCSLA----C-----------SECPICRTKISDRL 1092 (1096)
Q Consensus 1048 ~~C~IC~~~~~~------~v--l~pCgH~~~C~~C~~~----~-----------~~CPiCr~~i~~~i 1092 (1096)
..|.||++.... .+ -.+|+|. |-..|-.. . ..||+||.+|...+
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred ccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 479999985443 11 2379998 99999311 1 35999999987644
No 137
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=82.63 E-value=0.55 Score=50.27 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=31.9
Q ss_pred ceecceecCCCCChhHHHhhhhHHHH-HHHh----cCCceeEEeeccCCCCccccc
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVV-KAAM----EGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV-~~~l----~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+.||.+.+.+.....+.+. +..+- ...+ ......|+-||++|+|||+.+
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEI-VDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHH-HHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHH-HHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 47899999877766666542 22111 0111 122345899999999999976
No 138
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=82.61 E-value=0.45 Score=50.96 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=22.4
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCccccc
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.|+||.+.+.+..-..+.+ .+..+. ..+..|+-||++|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~-----~~~~~~-~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLE-----QVSHLA-PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHH-----HHHHHT-TSCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHH-----HHHHHh-CCCCCEEEECCCCCcHHHHH
Confidence 3789998765433333332 222332 23467888999999999865
No 139
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=82.34 E-value=0.56 Score=48.62 Aligned_cols=45 Identities=24% Similarity=0.455 Sum_probs=27.8
Q ss_pred eecceecCCCCChhHHHhhhhHHHHHHHh-cCCceeEEeeccCCCCcccccC
Q 001340 142 YAFDRVFGPHANSQEVYDVAARPVVKAAM-EGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~~~l-~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
+.||.+++. ..+..++. .+..+. .+....|+-||++|+|||+.+.
T Consensus 25 ~~~~~~~~~-~~~~~~~~-----~l~~~~~~~~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIG-----ALKSAASGDGVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSTTTSCC---CCHHHHH-----HHHHHHHTCSCSEEEEECSTTSSHHHHHH
T ss_pred CChhhccCC-CCCHHHHH-----HHHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 567766552 23344444 233333 3356788999999999998763
No 140
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.55 E-value=1.7 Score=50.66 Aligned_cols=113 Identities=23% Similarity=0.393 Sum_probs=65.3
Q ss_pred EEEEEeCCCChhh-hhcCCeEEEeeCCCEEEe--c-CCC---------CCcceecceecCCCCChhHHHhhhhHHHHH-H
Q 001340 103 SVTIRFRPLSERE-FQRGDEIAWYADGDKIVR--N-EYN---------PATAYAFDRVFGPHANSQEVYDVAARPVVK-A 168 (1096)
Q Consensus 103 ~V~vRvRP~~~~E-~~~~~~~~~~~~~~~~~~--~-~~~---------~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~-~ 168 (1096)
+.+|++....+.+ ...|..+....+...++. . ... ....-+||.|-|-+.--+.+.+.+..|+.. .
T Consensus 117 ~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~ 196 (428)
T 4b4t_K 117 SYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQAD 196 (428)
T ss_dssp EEEECBCSSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHH
T ss_pred EEEEeccccccHhhCCCCceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHH
Confidence 4566776665544 344555544444333221 1 111 112356777777655555666655555543 2
Q ss_pred Hhc--CC--ceeEEeeccCCCCcccccC--------------CC---CCCCCchHHHHHHHHHHhhcC
Q 001340 169 AME--GV--NGTVFAYGVTSSGKTHTMH--------------GD---QNSPGIIPLAIKDVFSIIQDT 215 (1096)
Q Consensus 169 ~l~--G~--N~tIfaYGqTgSGKT~Tm~--------------G~---~~~~GIipr~~~~LF~~i~~~ 215 (1096)
.+. |. .-.|+-||++|+|||+..- |+ ....|--++.++++|......
T Consensus 197 ~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~ 264 (428)
T 4b4t_K 197 LYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLAREN 264 (428)
T ss_dssp HHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHc
Confidence 333 32 2359999999999998642 11 234588889999999887654
No 141
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.36 E-value=12 Score=36.59 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhh
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENS 782 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~ 782 (1096)
|.-.++++....+.++.++.+++-.||.++....+ ++.....++++|+.++..|..++.
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~---------------------k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQI---------------------KAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666666622111 222233455666666666666666
Q ss_pred hHHHHHH
Q 001340 783 GLHVQNQ 789 (1096)
Q Consensus 783 ~L~~e~~ 789 (1096)
+|+.++.
T Consensus 128 ~le~~~~ 134 (138)
T 3hnw_A 128 KLETELN 134 (138)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 142
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.26 E-value=7.6 Score=38.07 Aligned_cols=33 Identities=36% Similarity=0.374 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001340 800 ELASAAAVELKNLAGEVTKLSLQNAKLEKELLA 832 (1096)
Q Consensus 800 ~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~ 832 (1096)
.....+.-+++.|-++++.|+.++.+|+.++..
T Consensus 103 ~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 103 IKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555566666888888888888777654
No 143
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=81.05 E-value=0.7 Score=45.63 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 163 ~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
..++..+..+....|+-||++|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 344555555667789999999999999873
No 144
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=81.02 E-value=0.75 Score=38.56 Aligned_cols=44 Identities=20% Similarity=0.458 Sum_probs=30.1
Q ss_pred cccccccccccccceEEeCCCCc----ccchhhhh------cCCCCCCCccccc
Q 001340 1046 NSHMCKVCFESPTAAILLPCRHF----CLCKSCSL------ACSECPICRTKIS 1089 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~vl~pCgH~----~~C~~C~~------~~~~CPiCr~~i~ 1089 (1096)
+...|.||++...+.++.||.+. .+=..|.. ....||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45589999987766678897652 24355621 1356999999875
No 145
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=80.84 E-value=11 Score=32.80 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001340 801 LASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGA 842 (1096)
Q Consensus 801 la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~ 842 (1096)
--+++-+--+||+.+|+.|..++..|..|+.+.+...+..+.
T Consensus 24 TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ 65 (77)
T 2w83_C 24 TKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEE 65 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677889999999999999999999999887766553
No 146
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=80.84 E-value=0.55 Score=50.68 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=32.7
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHH-----HHhcCCceeEEeeccCCCCccccc
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVK-----AAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~-----~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.|.||.+.+.+..-+.+.+.+..++.. ..--.....|+-||++|+|||+.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 578999987665555555544443221 111133456899999999999865
No 147
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=80.26 E-value=0.77 Score=50.74 Aligned_cols=49 Identities=20% Similarity=0.482 Sum_probs=29.6
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.|+||..+. ...+...+.. +..++..-- +....|+-||++|+|||+.+.
T Consensus 7 ~~~f~~fv~-g~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 7 KYTLENFIV-GEGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TCCSSSCCC-CTTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHHH
T ss_pred CCCcccCCC-CCcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHHH
Confidence 588988653 2334444442 333333211 123568899999999999874
No 148
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=80.15 E-value=0.26 Score=56.29 Aligned_cols=52 Identities=23% Similarity=0.408 Sum_probs=31.9
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHH-HHhcC---CceeEEeeccCCCCccccc
Q 001340 140 TAYAFDRVFGPHANSQEVYDVAARPVVK-AAMEG---VNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G---~N~tIfaYGqTgSGKT~Tm 191 (1096)
..+.||.+.+.+.--+.+...+..++.. .++.| ....|+-||++|+|||+..
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 3477899887554444444444433331 11122 2357999999999999865
No 149
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=79.71 E-value=0.62 Score=51.25 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=32.5
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHH-HHhc----CCceeEEeeccCCCCccccc
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAME----GVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~----G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+.||.|.+.+..-+.+.+.+..|+.. ..+. .....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 367888887655555565554444321 1111 23456899999999999875
No 150
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=79.22 E-value=76 Score=34.43 Aligned_cols=35 Identities=26% Similarity=0.488 Sum_probs=18.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhHH-HHHHhhhhhc
Q 001340 918 EYRKKVEESKRREEALENDLANMWV-LVAKLKKEVG 952 (1096)
Q Consensus 918 El~~~leE~kkk~~~Le~el~~~~~-l~~~Lkke~~ 952 (1096)
++...+++.+++..-+-.++-.-|+ +++.++..++
T Consensus 213 ~~~qq~e~f~~~~~p~~e~~~~~l~~~~e~l~~~l~ 248 (273)
T 3s84_A 213 HLDQQVEEFRRRVEPYGENFNKALVQQMEQLRQKLG 248 (273)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhC
Confidence 3344556666665555555544443 3455555554
No 151
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=79.13 E-value=14 Score=34.86 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=0.6
Q ss_pred HHHHhhHHHHHHH
Q 001340 815 EVTKLSLQNAKLE 827 (1096)
Q Consensus 815 ev~kL~~~n~qL~ 827 (1096)
++.+|..+|.-|.
T Consensus 92 eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 92 ELVRLQKDNDSLQ 104 (112)
T ss_dssp C------------
T ss_pred HHHHHHhhccchh
Confidence 5566666655554
No 152
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=79.09 E-value=0.57 Score=52.42 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCceeEEeeccCCCCccccc
Q 001340 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 163 ~plV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.-+-..+..|...+|+-||++|+|||.++
T Consensus 34 ~~L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 34 LPIYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 33334445778889999999999999876
No 153
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=78.53 E-value=0.44 Score=50.70 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=29.0
Q ss_pred cceecceecCCCCChhHHHhhhhHHHH-HHHhcCC----ceeEEeeccCCCCccccc
Q 001340 140 TAYAFDRVFGPHANSQEVYDVAARPVV-KAAMEGV----NGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV-~~~l~G~----N~tIfaYGqTgSGKT~Tm 191 (1096)
..++||.|.+.+.....+.+ +...+- ..++.++ ...|+-||++|+|||+.+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 35789998876543333322 221110 1122222 223899999999999986
No 154
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=78.36 E-value=0.67 Score=51.39 Aligned_cols=44 Identities=18% Similarity=0.430 Sum_probs=29.2
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCccccc
Q 001340 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
..|.||.+++.+ .+... +...++.+..+.|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~~----~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQE----DMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSCH----HHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccChH----HHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 348899987642 33322 233344445556999999999999875
No 155
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=78.31 E-value=36 Score=39.90 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcC
Q 001340 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNG 737 (1096)
Q Consensus 678 e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e 737 (1096)
+....+.++..+|+++...|+++-... + .+|+....-+.+++.+|++|+-++..+++
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQ--l-snIrvLQsnLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEK--V-QHIQLLQKNVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666666665553221 2 56667777777888888888888877776
No 156
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=77.91 E-value=0.79 Score=45.27 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 163 ~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
..++..+..+....|+-||++|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 344555555667788999999999998763
No 157
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.81 E-value=3.1 Score=48.56 Aligned_cols=75 Identities=21% Similarity=0.343 Sum_probs=50.4
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHH-HHhcCC----ceeEEeeccCCCCcccccC--------------CC---CCCC
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAMEGV----NGTVFAYGVTSSGKTHTMH--------------GD---QNSP 198 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G~----N~tIfaYGqTgSGKT~Tm~--------------G~---~~~~ 198 (1096)
..+||.|-|-+..-+++.+.+.-|+.. ..+.++ .-.|+-||++|+|||++.- |+ ....
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYI 256 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSS
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccc
Confidence 356788877665556666666666542 334322 3468999999999998642 11 2345
Q ss_pred CchHHHHHHHHHHhhcC
Q 001340 199 GIIPLAIKDVFSIIQDT 215 (1096)
Q Consensus 199 GIipr~~~~LF~~i~~~ 215 (1096)
|--...+..+|......
T Consensus 257 Gese~~ir~~F~~A~~~ 273 (437)
T 4b4t_L 257 GESARIIREMFAYAKEH 273 (437)
T ss_dssp SHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 77788999999887654
No 158
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=77.59 E-value=10 Score=34.51 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=31.5
Q ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001340 770 LKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 830 (1096)
Q Consensus 770 lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~El 830 (1096)
|+.....|.+++.+|... ......++..|..+|++|..+|.+|..|-
T Consensus 42 LE~~~s~le~e~~rlr~~--------------~~~~~~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 42 LEKSLSRMEDENNRLRLE--------------SKRLDARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--------------hccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554443 33446778888889999999999998773
No 159
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.52 E-value=22 Score=34.12 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=9.5
Q ss_pred HHHHhhHHHHHHHHHHHHHH
Q 001340 815 EVTKLSLQNAKLEKELLAAR 834 (1096)
Q Consensus 815 ev~kL~~~n~qL~~Ele~~k 834 (1096)
+...|++-.-.|..|+..++
T Consensus 104 EYq~LlnvKl~Ld~EIatYR 123 (129)
T 3tnu_B 104 EYQELMNTKLALDVEIATYR 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555544443
No 160
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=76.65 E-value=12 Score=33.69 Aligned_cols=73 Identities=23% Similarity=0.333 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001340 766 ENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASA-------AAVELKNLAGEVTKLSLQNAKLEKELLAARESMH 838 (1096)
Q Consensus 766 Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~a-------a~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~ 838 (1096)
||++|++....+.-+|.+|..+...+...+.-.+..+.. ++.++-.|.+-|+.+......|+..++.+++++.
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888998888888877755544444332 4555556666666666666666666666665553
No 161
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=75.95 E-value=0.83 Score=41.54 Aligned_cols=46 Identities=26% Similarity=0.767 Sum_probs=36.2
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccceeec
Q 001340 1047 SHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISDRLFA 1094 (1096)
Q Consensus 1047 ~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCr~~i~~~i~i 1094 (1096)
+.-|..|+-..++.| .|.--.+|-.|-..| ..||+|..++...|++
T Consensus 28 ~~nCKsCWf~~k~LV--~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 28 PQFCKSCWFENKGLV--ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCSSCSCCSSEE--ECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred cccChhhccccCCee--eecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 347999999999877 465444999997777 4499999998887765
No 162
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.94 E-value=4 Score=47.10 Aligned_cols=74 Identities=26% Similarity=0.398 Sum_probs=51.7
Q ss_pred eecceecCCCCChhHHHhhhhHHHHH-HHhc--CC--ceeEEeeccCCCCcccccC--------------CC---CCCCC
Q 001340 142 YAFDRVFGPHANSQEVYDVAARPVVK-AAME--GV--NGTVFAYGVTSSGKTHTMH--------------GD---QNSPG 199 (1096)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~--G~--N~tIfaYGqTgSGKT~Tm~--------------G~---~~~~G 199 (1096)
-+||.|-|-+.--+++.+.+.-|+.. ..+. |. .-.|+-||+.|+|||+..- |+ ....|
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vG 224 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIG 224 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccc
Confidence 56788877666666777777776653 3343 32 3469999999999998742 21 23457
Q ss_pred chHHHHHHHHHHhhcC
Q 001340 200 IIPLAIKDVFSIIQDT 215 (1096)
Q Consensus 200 Iipr~~~~LF~~i~~~ 215 (1096)
--.+.++++|......
T Consensus 225 ese~~vr~lF~~Ar~~ 240 (405)
T 4b4t_J 225 EGSRMVRELFVMAREH 240 (405)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHh
Confidence 7889999999988654
No 163
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=75.91 E-value=1.2 Score=43.78 Aligned_cols=18 Identities=22% Similarity=0.654 Sum_probs=15.1
Q ss_pred eeEEeeccCCCCcccccC
Q 001340 175 GTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm~ 192 (1096)
..++-||++|+|||+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp SEEEEESSSTTTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 457779999999999873
No 164
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=75.67 E-value=0.86 Score=49.52 Aligned_cols=51 Identities=18% Similarity=0.335 Sum_probs=32.4
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHH-HHhcC---CceeEEeeccCCCCccccc
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAMEG---VNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G---~N~tIfaYGqTgSGKT~Tm 191 (1096)
...||.+.+.+..-..+.+.+..|+.. ..+.| ....|+-||++|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 467888887554444555544444331 12222 3467999999999999875
No 165
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.35 E-value=68 Score=31.86 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=21.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 706 ILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 706 ~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.|..+|=.+......|..++..++..+
T Consensus 3 sLStKLI~Ain~qs~LeD~L~~~R~el 29 (154)
T 2ocy_A 3 ALSTQLIESVDKQSHLEEQLNKSLKTI 29 (154)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 366777788888888888888888887
No 166
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=75.28 E-value=1.3 Score=47.70 Aligned_cols=21 Identities=29% Similarity=0.170 Sum_probs=18.2
Q ss_pred cCCceeEEeeccCCCCccccc
Q 001340 171 EGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 171 ~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
......|+-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 566778999999999999875
No 167
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=75.04 E-value=21 Score=34.49 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=9.7
Q ss_pred HHHHhhHHHHHHHHHHHHHH
Q 001340 815 EVTKLSLQNAKLEKELLAAR 834 (1096)
Q Consensus 815 ev~kL~~~n~qL~~Ele~~k 834 (1096)
+...|+.-.-.|..|+..++
T Consensus 106 EYq~Ll~vKl~Ld~EIatYR 125 (131)
T 3tnu_A 106 EYKILLDVKTRLEQEIATYR 125 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555544443
No 168
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=74.36 E-value=13 Score=37.94 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=12.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 705 RILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 705 ~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
+.+++||..+...+..|+.++..|.+++
T Consensus 9 ~~~q~ql~~ad~LV~~L~~En~~L~~ql 36 (190)
T 4emc_A 9 NSVKQQIDSADLLVANLVNENFVLSEKL 36 (190)
T ss_dssp -----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777777
No 169
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=74.33 E-value=46 Score=37.56 Aligned_cols=28 Identities=14% Similarity=-0.038 Sum_probs=14.5
Q ss_pred HhhHHHHHHHHHHHHHhHHhhhhHHHHH
Q 001340 761 QSQETENEKLKLEHVQLSEENSGLHVQN 788 (1096)
Q Consensus 761 ~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~ 788 (1096)
..|+..|..|+.-+..+..+.++|+...
T Consensus 130 ~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 130 IEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555
No 170
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=74.14 E-value=19 Score=32.82 Aligned_cols=78 Identities=23% Similarity=0.179 Sum_probs=36.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHH-------hhHHHHHHHHHHHHHh
Q 001340 705 RILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQ-------SQETENEKLKLEHVQL 777 (1096)
Q Consensus 705 ~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~-------~Q~~Eie~lk~e~~~L 777 (1096)
..|..+|..|+.-+...+..||.|+....+..+ .-+.+.-|++.+. ...+.++++..++..|
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~-----------~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L 73 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI-----------VMETVPVLKAQADIYKADFQAERHAREKLVEKKEYL 73 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345566666666666666666666665522221 0122323333222 3334445555555555
Q ss_pred HHhhhhHHHHHHHHHH
Q 001340 778 SEENSGLHVQNQKLAE 793 (1096)
Q Consensus 778 ~Ee~~~L~~e~~kl~~ 793 (1096)
.++...|..++.+|..
T Consensus 74 ~~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 74 QEQLEQLQREFNKLKV 89 (94)
T ss_dssp HHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555544
No 171
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=74.11 E-value=0.78 Score=51.81 Aligned_cols=51 Identities=14% Similarity=0.356 Sum_probs=32.3
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHH----hcCCceeEEeeccCCCCccccc
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVKAA----MEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~----l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
...||.+++.+..-..+.+.+..|+...- +.+....|+-||++|+|||+..
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 35788888755444445544444332211 2345567999999999999875
No 172
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=74.03 E-value=0.97 Score=50.60 Aligned_cols=45 Identities=27% Similarity=0.254 Sum_probs=29.6
Q ss_pred eecceecCCCCChhHHHhhhhHHHHHHHhcCCce--eEEeeccCCCCccccc
Q 001340 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNG--TVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~--tIfaYGqTgSGKT~Tm 191 (1096)
+.||.+++. +.+.. ....++..+..|... .|+-||++|+|||+..
T Consensus 41 ~~~~~ivG~----~~~~~-~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 41 QASQGMVGQ----LAARR-AAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp SEETTEESC----HHHHH-HHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred cchhhccCh----HHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 567777763 33322 223355555566654 8999999999999875
No 173
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=73.17 E-value=43 Score=31.51 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhhhhHH----HHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 679 MQQTVTRLMSQCNEKAFE----LEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 679 ~~~~v~~L~~~l~e~~~e----le~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
..+.|..|++.|++..-. ++....|+..|.++|+++..+.+.|+++...+...+
T Consensus 51 CNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 51 ANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 345566666666654443 555567889999999999999999999988887777
No 174
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.93 E-value=6.9 Score=45.46 Aligned_cols=112 Identities=20% Similarity=0.329 Sum_probs=65.1
Q ss_pred EEEEeCCCChhh-hhcCCeEEEeeCCCEEEe---cCCCC---------CcceecceecCCCCChhHHHhhhhHHHHH-HH
Q 001340 104 VTIRFRPLSERE-FQRGDEIAWYADGDKIVR---NEYNP---------ATAYAFDRVFGPHANSQEVYDVAARPVVK-AA 169 (1096)
Q Consensus 104 V~vRvRP~~~~E-~~~~~~~~~~~~~~~~~~---~~~~~---------~~~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~ 169 (1096)
.+|++......+ +..|+.+.+..+...++. ....+ ...-+||.|-+-+.--+++.+.+.-|+.. ..
T Consensus 128 ~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~ 207 (437)
T 4b4t_I 128 YYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPEL 207 (437)
T ss_dssp CEEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHH
T ss_pred EEEecccccCHhHccCCcEEEEeccCccceeecCCccCCcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHH
Confidence 356666655444 455665555444333221 11111 12346677766555555566655555532 23
Q ss_pred hc--C--CceeEEeeccCCCCccccc--------------CCC---CCCCCchHHHHHHHHHHhhcC
Q 001340 170 ME--G--VNGTVFAYGVTSSGKTHTM--------------HGD---QNSPGIIPLAIKDVFSIIQDT 215 (1096)
Q Consensus 170 l~--G--~N~tIfaYGqTgSGKT~Tm--------------~G~---~~~~GIipr~~~~LF~~i~~~ 215 (1096)
+. | +--.|+-||+.|+|||... .|. ....|--.+.++.+|......
T Consensus 208 f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~ 274 (437)
T 4b4t_I 208 YEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGEN 274 (437)
T ss_dssp HHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHT
T ss_pred HHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhc
Confidence 33 2 2357999999999999764 121 234688899999999988654
No 175
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=72.77 E-value=0.66 Score=50.23 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=28.3
Q ss_pred ceecceecCCCCChhHHHhhhhHHHH-HHHhcCC----ceeEEeeccCCCCccccc
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVV-KAAMEGV----NGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV-~~~l~G~----N~tIfaYGqTgSGKT~Tm 191 (1096)
.++||.|.+.+.....+.+ +...+- ..++.++ ...|+-||++|+|||+.+
T Consensus 36 ~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 4788888776543333322 221110 1122222 223899999999999976
No 176
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=72.72 E-value=1.7 Score=43.35 Aligned_cols=66 Identities=27% Similarity=0.529 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccccc-----cceEEeCCCCcccchhhhhcCC-----CCCCCcc
Q 001340 1020 PLVARLKARMQEMKEKEQKYQGNGDPNSHMCKVCFESP-----TAAILLPCRHFCLCKSCSLACS-----ECPICRT 1086 (1096)
Q Consensus 1020 ~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~C~IC~~~~-----~~~vl~pCgH~~~C~~C~~~~~-----~CPiCr~ 1086 (1096)
..+.+|+.+++.+..+..........+.+.|.+|.... +..+..-|.|. +|..|....+ .|-+|+.
T Consensus 41 eRi~kLk~~l~~~~~k~~~~~~~~~~~~~~C~~C~~~fg~l~~~g~~C~~C~~~-VC~~C~~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 41 ERLQGLKGKIQKESSKRELLSDTAHLNETHCARCLQPYRLLLNSRRQCLECSLF-VCKSCSHAHPEEQGWLCDPCHL 116 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTGGGTBCTTTCCBGGGCSSCCEECTTTCCE-ECGGGEECCSSSSSCEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhcccccCCCccchhhcCccccccCCCCcCCCCCch-hhcccccccCCCCcEeeHHHHH
Confidence 34556666666554333222111123567999998863 34445566666 6777753332 2666654
No 177
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=72.40 E-value=0.94 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=17.9
Q ss_pred cCCceeEEeeccCCCCcccccC
Q 001340 171 EGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 171 ~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.+....|+-||++|+|||+.+.
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHH
Confidence 3455689999999999998763
No 178
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=72.38 E-value=35 Score=30.32 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=21.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 815 EVTKLSLQNAKLEKELLAARESMHSRGAAMQ 845 (1096)
Q Consensus 815 ev~kL~~~n~qL~~Ele~~k~~~~~~e~qiq 845 (1096)
++..+......|..|....+.+.+.|...|+
T Consensus 42 e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 42 EVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666677778888888888876554
No 179
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=72.10 E-value=1.7 Score=50.70 Aligned_cols=49 Identities=31% Similarity=0.474 Sum_probs=28.4
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
..|+||.... +..+...+. .+..++.. .|....+|-||++|+|||+.+.
T Consensus 100 ~~~tfd~fv~-g~~n~~a~~-~~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 100 PDYTFENFVV-GPGNSFAYH-AALEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp TTCSGGGCCC-CTTTHHHHH-HHHHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCCChhhcCC-CCchHHHHH-HHHHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 4588987542 223333333 22223322 2213468899999999999874
No 180
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=71.35 E-value=14 Score=39.37 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=6.8
Q ss_pred hccCCCCCchHHHHH
Q 001340 630 QSVNDPDGSKVQIQN 644 (1096)
Q Consensus 630 ~~~~~~~~~~~Q~qk 644 (1096)
.-..+.++.+.++.-
T Consensus 85 ~l~kd~ee~r~~l~P 99 (243)
T 2a01_A 85 EMSKDLEEVKAKVQP 99 (243)
T ss_dssp TSSCCSSCSSTTHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444455544443
No 181
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=71.14 E-value=42 Score=31.40 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhHHhhhhHHHHHHH
Q 001340 764 ETENEKLKLEHVQLSEENSGLHVQNQK 790 (1096)
Q Consensus 764 ~~Eie~lk~e~~~L~Ee~~~L~~e~~k 790 (1096)
.+-++++-.++..|.++...|..++++
T Consensus 82 RadREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 82 RHAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 334455555555555555555555443
No 182
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=71.12 E-value=0.72 Score=48.86 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=16.1
Q ss_pred CceeEEeeccCCCCccccc
Q 001340 173 VNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 173 ~N~tIfaYGqTgSGKT~Tm 191 (1096)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456899999999999875
No 183
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=70.91 E-value=32 Score=29.91 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=23.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 706 ILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 706 ~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.+.++|++++.++.+|+.+|..|+.++
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~L 30 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRL 30 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 467889999999999999999999998
No 184
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=70.66 E-value=1.7 Score=44.79 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=19.3
Q ss_pred HHHHHhcCCceeEEeeccCCCCcccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHT 190 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~T 190 (1096)
.+..+++|.| ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 4456678866 68889999999987
No 185
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=70.02 E-value=33 Score=32.77 Aligned_cols=65 Identities=17% Similarity=0.065 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001340 765 TENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLA 832 (1096)
Q Consensus 765 ~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~ 832 (1096)
..|+.|++++..|..+...+..+-+.... -.++..+.++.+|..-...+.+...+|.+|+.+++.
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~---ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVL---QLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777777666544 233334444444444444444444444555544443
No 186
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=69.81 E-value=2 Score=43.64 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=18.8
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+..+++|.| ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 3455677866 677899999999764
No 187
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=69.56 E-value=1.2 Score=49.51 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=31.8
Q ss_pred eecceecCCCCChhHHHhhhhHHHHH-HHhcCC---ceeEEeeccCCCCccccc
Q 001340 142 YAFDRVFGPHANSQEVYDVAARPVVK-AAMEGV---NGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G~---N~tIfaYGqTgSGKT~Tm 191 (1096)
..||.|.+.+..-+.+.+.+..|+-. .++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 56888887655444555444444331 333442 246889999999999875
No 188
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=69.35 E-value=74 Score=31.47 Aligned_cols=27 Identities=15% Similarity=-0.079 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHhHHhhhhHHHHH
Q 001340 762 SQETENEKLKLEHVQLSEENSGLHVQN 788 (1096)
Q Consensus 762 ~Q~~Eie~lk~e~~~L~Ee~~~L~~e~ 788 (1096)
.+...|..|+.+...|......|..++
T Consensus 65 ~~~~~I~~L~~El~~l~~ki~dLeeel 91 (152)
T 3a7p_A 65 ALLNTLAILQKELKSKEQEIRRLKEVI 91 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555443
No 189
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=69.17 E-value=65 Score=30.33 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=22.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 817 TKLSLQNAKLEKELLAARESMHSRGAAM 844 (1096)
Q Consensus 817 ~kL~~~n~qL~~Ele~~k~~~~~~e~qi 844 (1096)
..+.+....|+.+|..+++....|++|.
T Consensus 21 ~ECrN~T~lLq~qLTqAQe~l~~~eaQA 48 (121)
T 3mq7_A 21 MEARNVTHLLQQELTEAQKGFQDVEAQA 48 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778889999999999998765
No 190
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=68.92 E-value=1.1 Score=47.79 Aligned_cols=50 Identities=20% Similarity=0.251 Sum_probs=28.8
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHH-HHhc----CCceeEEeeccCCCCccccc
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAME----GVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~----G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+.||.+.+.+..-+.+.+ .+..+.. ..+. .....|+-||++|+|||+.+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHH-HHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHH-HHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 4678888875544444433 1221110 0111 22446899999999999876
No 191
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=68.75 E-value=2.1 Score=43.47 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=18.9
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+..+++|.+ ++..++||||||.+.
T Consensus 31 ~i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 31 ALPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCCC--EEEECCCCChHHHHH
Confidence 3455677866 677789999999873
No 192
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=68.59 E-value=1.6 Score=47.49 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=16.4
Q ss_pred CCceeEEeeccCCCCccccc
Q 001340 172 GVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.....|+-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34447999999999999875
No 193
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=68.55 E-value=56 Score=31.60 Aligned_cols=94 Identities=16% Similarity=0.106 Sum_probs=58.4
Q ss_pred CchhhHHHHHHHHHHHHHHHhhHHHHHHHhhhccCC---------------CCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 599 TSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVND---------------PDGSKVQIQNLEREIQEKRRQMRILEQRI 663 (1096)
Q Consensus 599 ~~d~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~---------------~~~~~~Q~qkL~~elrdKeeei~~L~qki 663 (1096)
|+|=+=.|++++..|+.-|......|.|...-+.-+ |+....++..|.+.+=.|..+|+.|-..+
T Consensus 1 MaDrlTQLQd~ldqla~~f~nsig~Lq~~a~p~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dli~k~kqIe~LIdsL 80 (132)
T 1ykh_B 1 MTDRMTQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSL 80 (132)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456667789999999988888888888754433222 12223456678888888999999888887
Q ss_pred HHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHH
Q 001340 664 IENGEASMANASMVDMQQTVTRLMSQCNEKAFELE 698 (1096)
Q Consensus 664 ~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele 698 (1096)
+.... +..+-...|.+|..++.+..-+|+
T Consensus 81 P~~~~------see~Q~~ri~~L~~E~~~~~~el~ 109 (132)
T 1ykh_B 81 PGVDV------SAEEQLRKIDMLQKKLVEVEDEKI 109 (132)
T ss_dssp TTTTC------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 63221 122334456656555554443333
No 194
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=68.43 E-value=79 Score=29.92 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHH
Q 001340 765 TENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELA 802 (1096)
Q Consensus 765 ~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la 802 (1096)
.++..+++......-.+..|+.+.+.|.+|..+-|.+.
T Consensus 69 ~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~h 106 (119)
T 3ol1_A 69 NTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLH 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666777777777777555554443
No 195
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=68.43 E-value=2.1 Score=43.19 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=16.6
Q ss_pred cCCceeEEeeccCCCCccccc
Q 001340 171 EGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 171 ~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.|....|+-||++|+|||+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445999999999999875
No 196
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.42 E-value=1.8e+02 Score=33.69 Aligned_cols=27 Identities=30% Similarity=0.234 Sum_probs=12.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001340 815 EVTKLSLQNAKLEKELLAARESMHSRG 841 (1096)
Q Consensus 815 ev~kL~~~n~qL~~Ele~~k~~~~~~e 841 (1096)
++++|..++++++.+++.....+..-.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 443 KETQLAEENARLKKLNGEADLALASAN 469 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence 455555555555555444444443333
No 197
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=67.72 E-value=3.1 Score=46.46 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=26.9
Q ss_pred eecceecCCCCChhHHHhhhhHHHHHHHhcCCc-e--eEEeeccCCCCccccc
Q 001340 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN-G--TVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N-~--tIfaYGqTgSGKT~Tm 191 (1096)
|.++.+++ ++...+.+.. .+..++.|.. . .++-||++|+|||+++
T Consensus 14 ~~p~~l~g----r~~~~~~l~~-~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 14 YVPKRLPH----REQQLQQLDI-LLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp CCCSCCTT----CHHHHHHHHH-HHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred cCCCCCCC----hHHHHHHHHH-HHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 44455444 3333333322 4445555533 3 6899999999999875
No 198
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=67.40 E-value=76 Score=36.82 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhHHhhhhHHHHHHHHHH
Q 001340 766 ENEKLKLEHVQLSEENSGLHVQNQKLAE 793 (1096)
Q Consensus 766 Eie~lk~e~~~L~Ee~~~L~~e~~kl~~ 793 (1096)
|+++.+++.+...++.++|..+++++..
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKK 456 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhh
Confidence 4444444444444444444444444444
No 199
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=67.38 E-value=17 Score=32.15 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=23.7
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
+...+.++|++++.++.+|+.+|..|+.++
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~L 36 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSL 36 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455677888899999999999999998888
No 200
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=67.35 E-value=76 Score=29.07 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=13.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHH
Q 001340 708 QEQLQNKCSENKKLQEKVNLLE 729 (1096)
Q Consensus 708 qeqL~~a~~e~~~L~~~l~~lk 729 (1096)
...+..++.+...|..+|+.+.
T Consensus 78 ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 78 EKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4445566666666666666553
No 201
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=66.46 E-value=2.6 Score=46.89 Aligned_cols=42 Identities=36% Similarity=0.511 Sum_probs=25.9
Q ss_pred ecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 143 AFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 143 ~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.|+.+++ |+.+.+ .+-..+-.|--..++-||+.|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~----~L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVYG----QNEVIT----TVRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCCS----CHHHHH----HHHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhcC----cHHHHH----HHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 4566664 344433 33333445533337889999999999874
No 202
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=66.45 E-value=55 Score=32.45 Aligned_cols=114 Identities=13% Similarity=0.124 Sum_probs=70.0
Q ss_pred CchhhHHHHHHHHHHHHHHHhhHHHHHHHhhhccCCCC---------------CchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 599 TSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPD---------------GSKVQIQNLEREIQEKRRQMRILEQRI 663 (1096)
Q Consensus 599 ~~d~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~---------------~~~~Q~qkL~~elrdKeeei~~L~qki 663 (1096)
|+|=+=.|++++..|+.=|......|+|...-+.-+|. ....++..|.+.+=.|..+|+.|-..+
T Consensus 1 MaDrLTQLQd~ldqLa~~f~nsig~Lq~~app~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dli~kakqIe~LIdsL 80 (151)
T 1yke_B 1 MTDRLTQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSL 80 (151)
T ss_dssp --CCHHHHHHHHHHHHHHTTTTHHHHHHTTGGGGCCC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45656678899999998888888888876554433322 223456678888888889999888877
Q ss_pred HHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 664 IENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 664 ~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
+.... +..+-...|.+|..++ +...++|.++-.+-..+.++|+.+-..+
T Consensus 81 Pg~~~------seeeQ~~ri~~Le~E~--------------~~~~~el~~~v~eae~ll~~v~~~l~~i 129 (151)
T 1yke_B 81 PGVDV------SAEEQLRKIDMLQKKL--------------VEVEDEKIEAIKKKEKLLRHVDSLIEDF 129 (151)
T ss_dssp TTSSS------CHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCC------CHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 63221 1113334455554444 4445555555555556666666665555
No 203
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=65.37 E-value=2.6 Score=44.23 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=19.4
Q ss_pred HHHHHhcCCceeEEeeccCCCCcccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHT 190 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~T 190 (1096)
.+..+++|.+ +++.++||||||.+
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 4556778877 68889999999987
No 204
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.31 E-value=4.9 Score=35.13 Aligned_cols=44 Identities=16% Similarity=0.449 Sum_probs=29.4
Q ss_pred cccccccccccceEE-eCCCCcccchhhhhc------CCCCCCCccccccee
Q 001340 1048 HMCKVCFESPTAAIL-LPCRHFCLCKSCSLA------CSECPICRTKISDRL 1092 (1096)
Q Consensus 1048 ~~C~IC~~~~~~~vl-~pCgH~~~C~~C~~~------~~~CPiCr~~i~~~i 1092 (1096)
..|.||++-.+.-+. ..|+|. |=..|... -..||+||..+...+
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 479999876553332 267776 66777431 157999999876544
No 205
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=65.28 E-value=84 Score=28.85 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 681 QTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 681 ~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
..+..|+.+.+...-.++...++.+...++...++.++..|++++..++..+
T Consensus 9 kKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~el 60 (101)
T 3u1c_A 9 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSR 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444444454544444444444555555666666666666666666666555
No 206
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=64.88 E-value=1.7 Score=45.68 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=19.5
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+..++.|.| ++..++||||||.+.
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4456678876 678899999999873
No 207
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=64.70 E-value=2.7 Score=48.68 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=22.7
Q ss_pred HHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 164 plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
+++..++..-.+.|...|+||||||.||.
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 35556666566788999999999999974
No 208
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=64.56 E-value=1.7 Score=48.17 Aligned_cols=50 Identities=18% Similarity=0.325 Sum_probs=31.0
Q ss_pred eecceecCCCCChhHHHhhhhHHHHH-HHhcCC---ceeEEeeccCCCCccccc
Q 001340 142 YAFDRVFGPHANSQEVYDVAARPVVK-AAMEGV---NGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G~---N~tIfaYGqTgSGKT~Tm 191 (1096)
+.||.|.+.+..-+.+.+.+..|+.. ..+.+. ...|+-||++|+|||+..
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 56888877554444455444444322 122232 246899999999999875
No 209
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=64.46 E-value=1.2 Score=48.44 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=27.8
Q ss_pred eecceecCCCCChhHHHhhhhHHHHH-HHhcCCc----eeEEeeccCCCCccccc
Q 001340 142 YAFDRVFGPHANSQEVYDVAARPVVK-AAMEGVN----GTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G~N----~tIfaYGqTgSGKT~Tm 191 (1096)
.+||.|-+.+.--+.+.+.+..|+-. .++.+++ ..|+-||+.|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 56777766555455555555555432 2334332 22899999999999875
No 210
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=64.30 E-value=2 Score=48.49 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=31.7
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHH-HHhcCC---ceeEEeeccCCCCccccc
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAMEGV---NGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G~---N~tIfaYGqTgSGKT~Tm 191 (1096)
...||.|.+.+..-..+.+.+..|+-. .++.+. ...|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 367888887655445555544444221 223332 235888999999999875
No 211
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=64.07 E-value=2.3 Score=45.64 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=19.8
Q ss_pred HHHHHHhcCCceeEEeeccCCCCccccc
Q 001340 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 164 plV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.++..++.|.| +++.++||||||.+.
T Consensus 83 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 83 KSIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHHhCCCc--EEEEccCCCCchHHH
Confidence 34556677866 678899999999873
No 212
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=62.79 E-value=3.1 Score=43.34 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=19.0
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+..++.|.+ ++..++||||||.+.
T Consensus 55 ~i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 55 TIGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 3455678876 567789999999874
No 213
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=62.74 E-value=1e+02 Score=28.95 Aligned_cols=63 Identities=22% Similarity=0.204 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001340 765 TENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 834 (1096)
Q Consensus 765 ~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k 834 (1096)
.|+..+...+..|..-.+.|+..|+-|-. -+-++.+=++|+-.+.+.....|+-|+.||..+.
T Consensus 42 ~El~~lr~~~~~l~~~iReLEq~NDDLER-------~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe 104 (111)
T 2v66_B 42 DDLSQTRAIKEQLHKYVRELEQANDDLER-------AKRATIVSLEDFEQRLNQAIERNAFLESELDEKE 104 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555444 2223445678888899999999999999988554
No 214
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=62.71 E-value=53 Score=31.44 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcC
Q 001340 713 NKCSENKKLQEKVNLLEQQLACQNG 737 (1096)
Q Consensus 713 ~a~~e~~~L~~~l~~lk~~l~~~~e 737 (1096)
.....+.+|+++|..|+..+...-|
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e 34 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDE 34 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3466788899999999998844333
No 215
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=62.50 E-value=4 Score=45.62 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=27.8
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHHhcC-CceeEEeeccCCCCccccc
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEG-VNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G-~N~tIfaYGqTgSGKT~Tm 191 (1096)
.|.++.+++ ++...+.+.. .+..++.| ....|+-||++|+|||+.+
T Consensus 16 ~~~p~~l~g----r~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 16 LSVFKEIPF----REDILRDAAI-AIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp HHHCSSCTT----CHHHHHHHHH-HHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred ccCCCCCCC----hHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 344555554 3334433332 34444444 3458999999999999875
No 216
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=62.16 E-value=3.1 Score=42.80 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=19.0
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+..+++|.| ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhhh
Confidence 3456677876 667789999999864
No 217
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=61.73 E-value=3 Score=49.40 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=30.3
Q ss_pred eecceecCCCCChhHHHhhhhHHHH-----HHHhcCCceeEEeeccCCCCccccc
Q 001340 142 YAFDRVFGPHANSQEVYDVAARPVV-----KAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV-----~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
..||.+.+....-..+++.+..++- ..+-......|+-||++|+|||+..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 4566666654444555554444321 1111234567999999999999865
No 218
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=61.63 E-value=3 Score=47.28 Aligned_cols=28 Identities=36% Similarity=0.442 Sum_probs=21.3
Q ss_pred HHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
++.+++.--.+.|...|+||||||.+|.
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 4445555555688899999999999973
No 219
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.38 E-value=11 Score=36.54 Aligned_cols=30 Identities=27% Similarity=0.230 Sum_probs=12.8
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
-+..|++||.+++..+..++..+..||..+
T Consensus 104 r~~~L~~ql~e~e~ll~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 104 LNKRLTEQLREKDMLLDTLTLQLKNLKKVM 133 (135)
T ss_dssp HHHHHHHTTTHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466788888888888888888888888765
No 220
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.14 E-value=4.3 Score=47.62 Aligned_cols=74 Identities=18% Similarity=0.341 Sum_probs=50.0
Q ss_pred eecceecCCCCChhHHHhhhhHHHHH-HHhcCC----ceeEEeeccCCCCcccccC--------------CC---CCCCC
Q 001340 142 YAFDRVFGPHANSQEVYDVAARPVVK-AAMEGV----NGTVFAYGVTSSGKTHTMH--------------GD---QNSPG 199 (1096)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G~----N~tIfaYGqTgSGKT~Tm~--------------G~---~~~~G 199 (1096)
.+||.|-|-+.--+.+.+.+.-|+.. ..+.++ --.|+-||+.|+|||+..- |. ....|
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vG 285 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVG 285 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCC
Confidence 57888877666556666666665543 334332 3469999999999997641 11 23457
Q ss_pred chHHHHHHHHHHhhcC
Q 001340 200 IIPLAIKDVFSIIQDT 215 (1096)
Q Consensus 200 Iipr~~~~LF~~i~~~ 215 (1096)
--.+.++.+|......
T Consensus 286 esek~ir~lF~~Ar~~ 301 (467)
T 4b4t_H 286 EGARMVRELFEMARTK 301 (467)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7788899999887654
No 221
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=61.02 E-value=11 Score=34.80 Aligned_cols=66 Identities=24% Similarity=0.259 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001340 762 SQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASY----------AKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 830 (1096)
Q Consensus 762 ~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~----------~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~El 830 (1096)
.-..+|+.|+.|...|.+++..|+.++++..-..+| ..-.|+.|..+. ...+++|++++.+|+.-+
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~---~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRL---REDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999885432222 112334443333 256777777777666554
No 222
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=60.83 E-value=1.8 Score=44.05 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=18.1
Q ss_pred HHHhcCCceeEEeeccCCCCcccccC
Q 001340 167 KAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 167 ~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
..+++|.+ ++.+|+||+|||++..
T Consensus 43 ~~~~~~~~--~li~~~tGsGKT~~~~ 66 (216)
T 3b6e_A 43 QPALEGKN--IIICLPTGSGKTRVAV 66 (216)
T ss_dssp HHHHTTCC--EEEECSCHHHHHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCCHHHHHH
Confidence 44556755 5678999999999863
No 223
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=60.78 E-value=29 Score=34.30 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 678 e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.|+.++..|...+..+..+++.|...+..+++.+.....++..++.++..|+..-
T Consensus 72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555556666666666666666666666666666666665543
No 224
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=60.67 E-value=26 Score=26.71 Aligned_cols=41 Identities=24% Similarity=0.326 Sum_probs=27.5
Q ss_pred hHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001340 777 LSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVT 817 (1096)
Q Consensus 777 L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~ 817 (1096)
|..|...|+.+++.|....-..||++..++-++.+|.+.++
T Consensus 8 lenevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 8 LENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 44455555555666666566678888888888887777653
No 225
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=60.35 E-value=37 Score=31.39 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001340 642 IQNLEREIQEKRRQMRILEQRIIEN 666 (1096)
Q Consensus 642 ~qkL~~elrdKeeei~~L~qki~~s 666 (1096)
+++|++++...+.++....||+..+
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKLkdA 61 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKLKDA 61 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777777777777433
No 226
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=60.20 E-value=71 Score=28.68 Aligned_cols=51 Identities=27% Similarity=0.375 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001340 764 ETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARE 835 (1096)
Q Consensus 764 ~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~ 835 (1096)
...+.+|+..+..|.+++..|..+ +.+.-++..+|......|+..+....+
T Consensus 34 e~~rkele~~~~~l~~ek~~L~~q---------------------l~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 34 ERIKKELEEQNVTLLEQKNDLFGS---------------------MKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777666 233344666777777777776665543
No 227
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=60.02 E-value=2.1 Score=49.85 Aligned_cols=51 Identities=14% Similarity=0.241 Sum_probs=29.9
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHH-HHhcC---CceeEEeeccCCCCccccc
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAMEG---VNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G---~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+.||.|.+.+..-..+.+.+..|+-. .++.| ....|+-||++|+|||+..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 467888877443333333333333221 22333 2356889999999999875
No 228
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=59.64 E-value=2.6e+02 Score=32.51 Aligned_cols=31 Identities=13% Similarity=0.067 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhhcCC
Q 001340 924 EESKRREEALENDLANMWVLVAKLKKEVGSV 954 (1096)
Q Consensus 924 eE~kkk~~~Le~el~~~~~l~~~Lkke~~~~ 954 (1096)
+.+-+|...++.+++...-.|..|.+.-..+
T Consensus 238 e~LLkkh~~le~~l~~~~~~I~~L~~qA~~l 268 (450)
T 3r6n_A 238 LEQIKELEKEREKILEYKRQVQNLVNKSKKI 268 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555566666666666668887776553
No 229
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=59.35 E-value=1.1e+02 Score=28.12 Aligned_cols=10 Identities=30% Similarity=0.335 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 001340 805 AAVELKNLAG 814 (1096)
Q Consensus 805 a~~qlk~l~~ 814 (1096)
++.+..+|-.
T Consensus 84 aE~ev~~L~R 93 (101)
T 3u1c_A 84 AESEVASLNR 93 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 230
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=59.34 E-value=3.8 Score=42.41 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=18.8
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+..+++|.|. +..++||||||.+.
T Consensus 50 ~i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 50 AWPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 34556788764 77789999999874
No 231
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=59.34 E-value=49 Score=30.10 Aligned_cols=49 Identities=16% Similarity=0.138 Sum_probs=24.2
Q ss_pred HhhhhHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHH
Q 001340 779 EENSGLHVQNQKLAEEASYAKELASA--AAVELKNLAGEVTKLSLQNAKLEKE 829 (1096)
Q Consensus 779 Ee~~~L~~e~~kl~~e~~~~k~la~a--a~~qlk~l~~ev~kL~~~n~qL~~E 829 (1096)
|.+..|..+.+-..+ ....+++.. +..+.+.|..++..|..+|.+|..+
T Consensus 40 E~i~vLk~Qv~IY~~--DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~~~ 90 (94)
T 3jsv_C 40 ETVPVLKAQADIYKA--DFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKVG 90 (94)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555444 333344433 4455666666666666666666554
No 232
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=59.34 E-value=4 Score=44.30 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=17.2
Q ss_pred cCCceeEEeeccCCCCcccccC
Q 001340 171 EGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 171 ~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.|....++-||++|+|||++..
T Consensus 43 ~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 43 TGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp HTCCCEEEEESCTTSSHHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHHH
Confidence 4544458999999999998763
No 233
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=59.33 E-value=35 Score=32.64 Aligned_cols=30 Identities=20% Similarity=0.517 Sum_probs=19.8
Q ss_pred ccccccccccccce----EEeCCCCcccchhhhhc
Q 001340 1047 SHMCKVCFESPTAA----ILLPCRHFCLCKSCSLA 1077 (1096)
Q Consensus 1047 ~~~C~IC~~~~~~~----vl~pCgH~~~C~~C~~~ 1077 (1096)
...|.+|...+.-. ---.||+. ||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~v-fC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNI-FCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCE-ECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeE-EChHHhCC
Confidence 34799997765421 11368887 99999543
No 234
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=59.28 E-value=8.4 Score=46.49 Aligned_cols=14 Identities=7% Similarity=0.147 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhHHH
Q 001340 610 VKMLAGEIAFSSSN 623 (1096)
Q Consensus 610 ~k~l~~e~a~~~~~ 623 (1096)
.+...|-+.+....
T Consensus 281 ~~lc~~~H~ff~~~ 294 (575)
T 2i1j_A 281 LALCMGNHELYMRR 294 (575)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 44555666665433
No 235
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=59.27 E-value=2.8 Score=45.81 Aligned_cols=45 Identities=20% Similarity=0.236 Sum_probs=26.7
Q ss_pred eecceecCCCCChhHHHhhhhHHHHHHHh--cCCceeEEeeccCCCCccccc
Q 001340 142 YAFDRVFGPHANSQEVYDVAARPVVKAAM--EGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~~~l--~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
..||.+++....-..+. .++..+. .+....|+-||++|+|||+..
T Consensus 9 ~~~~~~ig~~~~~~~l~-----~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLR-----VYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CSTTTCCSCHHHHHHHH-----HHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred ccHHHhhCHHHHHHHHH-----HHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 46777766432222222 2333332 234567888999999999875
No 236
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=59.25 E-value=3.7 Score=45.06 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=20.9
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+..++.|-+..++++++||||||.+.
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 456677874456889999999999873
No 237
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=59.10 E-value=95 Score=28.46 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=24.5
Q ss_pred HHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 683 VTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 683 v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
+..|+.++.....++.....+...|+++|.........++.+...+...+
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~El 56 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEV 56 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444455555566655555555444544444444444
No 238
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=59.06 E-value=3.9 Score=43.15 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=18.3
Q ss_pred HHHHhcCCceeEEeeccCCCCccccc
Q 001340 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
+..+++|.| ++..++||||||.+.
T Consensus 54 i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 54 IPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445677876 567789999999864
No 239
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=58.81 E-value=1.3e+02 Score=28.81 Aligned_cols=20 Identities=30% Similarity=0.243 Sum_probs=9.7
Q ss_pred HHHHhhHHHHHHHHHHHHHH
Q 001340 815 EVTKLSLQNAKLEKELLAAR 834 (1096)
Q Consensus 815 ev~kL~~~n~qL~~Ele~~k 834 (1096)
-|+.|....--|+.||+.-|
T Consensus 113 MVe~LT~TiG~LrKELEdEk 132 (167)
T 4gkw_A 113 MVESLTETIGILRKELENEK 132 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555433
No 240
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=58.14 E-value=2.8 Score=46.54 Aligned_cols=20 Identities=35% Similarity=0.675 Sum_probs=16.7
Q ss_pred CCceeEEeeccCCCCccccc
Q 001340 172 GVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm 191 (1096)
+....|+-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34568999999999999876
No 241
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=58.13 E-value=4.4 Score=44.08 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=23.2
Q ss_pred HHHHHHHhcCC---ceeEEeeccCCCCccccc
Q 001340 163 RPVVKAAMEGV---NGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 163 ~plV~~~l~G~---N~tIfaYGqTgSGKT~Tm 191 (1096)
...+..+++|. --||+-||+.|+|||+..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 34577788887 348999999999999875
No 242
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=58.05 E-value=4.5 Score=47.13 Aligned_cols=46 Identities=17% Similarity=0.183 Sum_probs=30.3
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHHhcCCc--eeEEeeccCCCCccccc
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN--GTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N--~tIfaYGqTgSGKT~Tm 191 (1096)
.|.||.|.+ |+++.+. +..++..+..|.. ..|+-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~-l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREA-CGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHH-HHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHH-HHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 466777765 4444442 2345566666654 36888999999999875
No 243
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=57.91 E-value=3.1 Score=45.90 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=27.0
Q ss_pred ecceecCCCCChhHHHhhhhHHHHHHHh--cCCceeEEeeccCCCCccccc
Q 001340 143 AFDRVFGPHANSQEVYDVAARPVVKAAM--EGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 143 ~FD~VF~~~~~q~~Vy~~~~~plV~~~l--~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.||.+.+. +.+...+ ..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG~----~~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIGQ----ESIKKNL-NVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCSC----HHHHHHH-HHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCCh----HHHHHHH-HHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 56776653 3333322 22344333 344567999999999999865
No 244
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=57.91 E-value=12 Score=31.99 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=32.3
Q ss_pred hhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 690 CNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 690 l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.+++...+..|....+.|+..|+.+..+|.+|+.++|.+++.+
T Consensus 13 ~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556667788889999999999999999999999999888
No 245
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=57.61 E-value=1.3e+02 Score=28.67 Aligned_cols=58 Identities=26% Similarity=0.281 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHHH-------hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 675 SMVDMQQTVTRLMSQCNEKAFELEIKSA-------DNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 675 ~~~e~~~~v~~L~~~l~e~~~ele~k~a-------e~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
-++++++-+..+..+++|--.+|++--. -...||.+=..-.-++..|+.++..+++.+
T Consensus 12 ~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~ 76 (167)
T 4gkw_A 12 EVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNL 76 (167)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhH
Confidence 4568888888888899988888887622 333444444444455555555555555555
No 246
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=57.26 E-value=4 Score=42.83 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=18.5
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+..++.|.| +++.++||||||.+.
T Consensus 59 ~i~~~~~g~~--~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 59 GWPVALSGLD--MVGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHHTCC--EEEEECTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCcCHHHHHH
Confidence 3455667876 566789999999874
No 247
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=57.17 E-value=84 Score=36.86 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=0.0
Q ss_pred ccccccccceEEeCCCCccc
Q 001340 1051 KVCFESPTAAILLPCRHFCL 1070 (1096)
Q Consensus 1051 ~IC~~~~~~~vl~pCgH~~~ 1070 (1096)
.-|-...+-+|+.|=||--+
T Consensus 440 ~sCsktitktv~gpdG~kev 459 (562)
T 3ghg_A 440 RSCSKTVTKTVIGPDGHKEV 459 (562)
T ss_dssp --------------------
T ss_pred ccccceeeeeeeCCCCCcee
Confidence 34766777888888888744
No 248
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=56.80 E-value=36 Score=30.09 Aligned_cols=31 Identities=32% Similarity=0.326 Sum_probs=24.9
Q ss_pred HHHHHH----HHhHHHHHHHHHhhhHHHHHHHHHH
Q 001340 695 FELEIK----SADNRILQEQLQNKCSENKKLQEKV 725 (1096)
Q Consensus 695 ~ele~k----~ae~~~lqeqL~~a~~e~~~L~~~l 725 (1096)
++|+.| -++...||+||..+++++.-|+.++
T Consensus 43 lQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 43 NQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455555 3699999999999999888888765
No 249
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=56.68 E-value=4.6 Score=42.06 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=18.1
Q ss_pred HHHHhcCCceeEEeeccCCCCccccc
Q 001340 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
+..++.|.| ++..++||||||.+.
T Consensus 55 i~~~~~~~~--~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 55 IPLGRCGLD--LIVQAKSGTGKTCVF 78 (230)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 345677876 567789999999873
No 250
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=56.39 E-value=4 Score=42.86 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCceeEEeeccCCCCccccc
Q 001340 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 163 ~plV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
..++..+..|- .++..|+||||||..+
T Consensus 67 ~~~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 67 SEILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 34455566664 4677899999999754
No 251
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=55.75 E-value=5 Score=45.14 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=19.8
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+..++.|.+ ++..++||||||.+.
T Consensus 70 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 70 AILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HhHHHhCCCC--EEEECCCCCcccHHH
Confidence 3456778887 678899999999873
No 252
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=55.74 E-value=4.8 Score=42.66 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=18.5
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+..++.|.+ ++..++||||||.+.
T Consensus 73 ~i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 73 AIPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEcCCCCCchhHh
Confidence 3455677866 566789999999874
No 253
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=55.30 E-value=6 Score=38.16 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=16.0
Q ss_pred CceeEEeeccCCCCcccccC
Q 001340 173 VNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 173 ~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.+..|+-||++|+|||+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHG
T ss_pred CCCcEEEECCCCccHHHHHH
Confidence 34558889999999998754
No 254
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=55.14 E-value=4.5 Score=43.64 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=16.5
Q ss_pred CceeEEeeccCCCCcccccC
Q 001340 173 VNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 173 ~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
-...|.-.|+||||||.+|.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHH
Confidence 34577889999999999873
No 255
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=54.80 E-value=34 Score=27.75 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=11.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001340 812 LAGEVTKLSLQNAKLEKELLAARESMH 838 (1096)
Q Consensus 812 l~~ev~kL~~~n~qL~~Ele~~k~~~~ 838 (1096)
|..++..|.+.|.+|.+.|..++..+.
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~ 40 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLL 40 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443333
No 256
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=54.74 E-value=4.2 Score=44.83 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=26.2
Q ss_pred ecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 143 AFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 143 ~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.|+.+++...- ...+...+..|....++-||++|+|||+++.
T Consensus 35 ~~~~i~g~~~~--------~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 35 NLDEVTAQDHA--------VTVLKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp STTTCCSCCTT--------HHHHHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred CHHHhhCCHHH--------HHHHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 46666654322 2333444445533448999999999999763
No 257
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=54.63 E-value=36 Score=30.12 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 641 QIQNLEREIQEKRRQMRILEQRIIE 665 (1096)
Q Consensus 641 Q~qkL~~elrdKeeei~~L~qki~~ 665 (1096)
++|.+..+-.+.++.+..|++++..
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~ 38 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEE 38 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4555555555555556555555543
No 258
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=54.32 E-value=5.8 Score=44.11 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCccccc
Q 001340 175 GTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1096)
..++-||++|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 34677999999999986
No 259
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=53.87 E-value=67 Score=31.44 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHH
Q 001340 752 YVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLA 792 (1096)
Q Consensus 752 ~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~ 792 (1096)
...++.+.+..=.++++.+..++..|.++++-+..-.+.|.
T Consensus 81 akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLr 121 (146)
T 2xnx_M 81 LLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLR 121 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC--------
T ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33333333333333444455555555555544444444333
No 260
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=53.57 E-value=72 Score=30.38 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHH
Q 001340 640 VQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENK 719 (1096)
Q Consensus 640 ~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~ 719 (1096)
.++..|.+++...+.+++.+...-.. -+.+|..+|..|.++|.+. +.+.+.|-.++.
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~---------~v~ql~~~i~~Le~eL~e~--------------r~~~q~a~~e~e 71 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQR---------VVLQLKGHVSELEADLAEQ--------------QHLRQQAADDCE 71 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 46667777777777777666332211 1224444555555444433 122345566666
Q ss_pred HHHHHHHHHHHHH
Q 001340 720 KLQEKVNLLEQQL 732 (1096)
Q Consensus 720 ~L~~~l~~lk~~l 732 (1096)
.|+.+++.++...
T Consensus 72 ~Lr~e~~~l~~~~ 84 (120)
T 3i00_A 72 FLRAELDELRRQR 84 (120)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh
Confidence 6777766665444
No 261
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=53.52 E-value=61 Score=33.13 Aligned_cols=45 Identities=27% Similarity=0.386 Sum_probs=32.6
Q ss_pred HhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 688 SQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 688 ~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.+|+.-.+.......||..|.+||..+..|+..|+++|+.++.+.
T Consensus 13 ~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 13 QQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444444555567889999999999999999999999999987
No 262
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=53.44 E-value=3.4 Score=42.56 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=18.1
Q ss_pred HHHHhcCCceeEEeeccCCCCccccc
Q 001340 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
+..+++|.| ++..++||||||.+.
T Consensus 35 i~~~~~~~~--~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 35 IPGALRGES--MVGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHTCC--EEEECCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 455667766 567789999999873
No 263
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=53.09 E-value=3.8 Score=43.03 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=19.7
Q ss_pred HHHHhcCCc--eeEEeeccCCCCcccccC
Q 001340 166 VKAAMEGVN--GTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 166 V~~~l~G~N--~tIfaYGqTgSGKT~Tm~ 192 (1096)
+..++.|.- -+|+-||+.|+|||+...
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 344555532 469999999999998764
No 264
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=52.95 E-value=37 Score=39.35 Aligned_cols=10 Identities=0% Similarity=-0.267 Sum_probs=5.0
Q ss_pred CHHHHHHHHH
Q 001340 266 SPGHALSFIA 275 (1096)
Q Consensus 266 s~~e~~~ll~ 275 (1096)
+.+|++.+..
T Consensus 142 Twdel~~~a~ 151 (471)
T 3mq9_A 142 TWEEIPALDK 151 (471)
T ss_dssp BGGGHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4555555443
No 265
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=52.84 E-value=5.5 Score=46.28 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=21.4
Q ss_pred HHHHHhcCCceeEEeeccCCCCcccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHT 190 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~T 190 (1096)
.+..++.|.+..++..|+||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 45566778667889999999999977
No 266
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=52.54 E-value=7.7 Score=45.40 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=27.1
Q ss_pred ecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 143 AFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 143 ~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.||.|++. +.. ...++..+..+....++-||++|+|||+...
T Consensus 178 ~ld~iiGr----~~~----i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 178 SLDPVIGR----SKE----IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CSCCCCCC----HHH----HHHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccCc----HHH----HHHHHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 46766654 222 2234444444556678899999999998764
No 267
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=52.42 E-value=4.8 Score=38.93 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=16.6
Q ss_pred CCceeEEeeccCCCCccccc
Q 001340 172 GVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm 191 (1096)
..+..|+-||++|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45567899999999999864
No 268
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=51.64 E-value=3.8 Score=41.73 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=15.0
Q ss_pred eeEEeeccCCCCccccc
Q 001340 175 GTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1096)
..++-||++|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47899999999999875
No 269
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=51.60 E-value=6 Score=44.36 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=21.1
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+..++.|.+..++..++||||||.+.
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 455667775666788999999999873
No 270
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=51.40 E-value=5.7 Score=44.06 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=20.5
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+..++.|-+..++..++||||||.+.
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 445667775456788899999999864
No 271
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=51.30 E-value=32 Score=28.87 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001340 808 ELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGA 842 (1096)
Q Consensus 808 qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~ 842 (1096)
.+..|..+|..|+.+|..|..++..++.+...|..
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778888888998888888888888777764
No 272
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=51.10 E-value=5.8 Score=42.76 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.5
Q ss_pred ceeEEeeccCCCCccccc
Q 001340 174 NGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm 191 (1096)
...|+-||++|+|||+..
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457889999999999876
No 273
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=50.66 E-value=5.9 Score=44.66 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=18.6
Q ss_pred HHHHhcCCceeEEeeccCCCCccccc
Q 001340 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
+..++.|.| ++..++||||||.+.
T Consensus 68 i~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 68 IKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCCchHHH
Confidence 445677877 677899999999764
No 274
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=50.49 E-value=35 Score=28.74 Aligned_cols=39 Identities=33% Similarity=0.472 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHH
Q 001340 763 QETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKEL 801 (1096)
Q Consensus 763 Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~l 801 (1096)
.+.+++.++.+...|..+|..|..+...|..|-.+-+++
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666644444433
No 275
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=50.41 E-value=23 Score=31.18 Aligned_cols=53 Identities=15% Similarity=0.178 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHH
Q 001340 720 KLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHV 786 (1096)
Q Consensus 720 ~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~ 786 (1096)
+++..|..|+.++ +-.+..+.+|+..+..|-.+|+++.+....|.+....+..
T Consensus 11 ~le~Ri~~LE~kl--------------AfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 11 ELEARLVELETRL--------------SFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455566666666 3345667788888899999999999888888776655543
No 276
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=50.21 E-value=78 Score=27.80 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 679 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 679 ~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
+...+..|+.+.+.-.-.++...++.+....++..++.++..|++++..++..+
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~el 57 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDEL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344555566666655555555566666666777777777777777777777777
No 277
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=50.10 E-value=6.2 Score=41.69 Aligned_cols=24 Identities=25% Similarity=0.083 Sum_probs=17.8
Q ss_pred HHHhcCCceeEEeeccCCCCcccccC
Q 001340 167 KAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 167 ~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
..++++.+ ++.+|+||+|||+...
T Consensus 103 ~~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 103 ERWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHHhCCC--EEEEeCCCCCHHHHHH
Confidence 34566655 6778899999999853
No 278
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=50.09 E-value=4.3 Score=37.01 Aligned_cols=29 Identities=24% Similarity=0.660 Sum_probs=22.8
Q ss_pred ccccccccc-ccceEE--eCCCCcccchhhhhc
Q 001340 1048 HMCKVCFES-PTAAIL--LPCRHFCLCKSCSLA 1077 (1096)
Q Consensus 1048 ~~C~IC~~~-~~~~vl--~pCgH~~~C~~C~~~ 1077 (1096)
..|.+|.+. ....+. ++|+|. ||..|...
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKA 35 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChH-HhHHHCHH
Confidence 479999964 455555 899999 99999654
No 279
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=49.80 E-value=8.4 Score=43.33 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=19.4
Q ss_pred HHHhcC---CceeEEe--eccCCCCccccc
Q 001340 167 KAAMEG---VNGTVFA--YGVTSSGKTHTM 191 (1096)
Q Consensus 167 ~~~l~G---~N~tIfa--YGqTgSGKT~Tm 191 (1096)
..+..| -...++. ||+.|+|||+.+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 555555 4567888 999999999876
No 280
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=49.76 E-value=58 Score=30.43 Aligned_cols=65 Identities=23% Similarity=0.364 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHH
Q 001340 641 QIQNLEREIQEKRRQMRILEQRIIENGE---ASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSE 717 (1096)
Q Consensus 641 Q~qkL~~elrdKeeei~~L~qki~~s~~---~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e 717 (1096)
.+++|.+++...+.++....||+..+.. ..|. ++|+.. |..-...
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPD----------------evNK~t----------------l~~R~~~ 70 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPD----------------ELNKRT----------------LTDREGV 70 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------HHHHHH----------------HHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----------------HHHHHH----------------HHHHHHH
Confidence 3678899999999999999999864432 2222 222221 2233566
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 001340 718 NKKLQEKVNLLEQQLACQNG 737 (1096)
Q Consensus 718 ~~~L~~~l~~lk~~l~~~~e 737 (1096)
...|+.||+.||+++.....
T Consensus 71 Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 71 AVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999977665
No 281
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=49.41 E-value=72 Score=28.08 Aligned_cols=64 Identities=16% Similarity=0.248 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHH
Q 001340 641 QIQNLEREIQEKRRQMRILEQRIIENGE---ASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSE 717 (1096)
Q Consensus 641 Q~qkL~~elrdKeeei~~L~qki~~s~~---~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e 717 (1096)
.+++|.+++...+.++....||+..+.. ..|. ++|+.. |..-..+
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPD----------------evNK~~----------------~~~R~~~ 53 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPD----------------DVNKST----------------LQSRRAA 53 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------HHHHHH----------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----------------HHHHHH----------------HHHHHHH
Confidence 4678889999999999999999954433 2232 122221 1222455
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 001340 718 NKKLQEKVNLLEQQLACQN 736 (1096)
Q Consensus 718 ~~~L~~~l~~lk~~l~~~~ 736 (1096)
...|+.||..||+++.++.
T Consensus 54 V~~lq~Ki~elkrqlAd~v 72 (78)
T 2ic6_A 54 VSALETKLGELKRELADLI 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6668888888888885544
No 282
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=48.83 E-value=55 Score=28.91 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=30.6
Q ss_pred HHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 001340 701 SADNRILQEQLQNKCSENKKLQEKVNLLEQQLAC 734 (1096)
Q Consensus 701 ~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~ 734 (1096)
.+++-..+.+|++++.++.+|..++..++.++-+
T Consensus 37 r~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 37 RTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688889999999999999999999999999854
No 283
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=48.74 E-value=5.5 Score=43.16 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=15.2
Q ss_pred eeEEeeccCCCCccccc
Q 001340 175 GTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1096)
..|+-||++|+|||++.
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57999999999999875
No 284
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=48.64 E-value=16 Score=44.02 Aligned_cols=14 Identities=7% Similarity=0.411 Sum_probs=6.2
Q ss_pred CCCChhHHHhhhhH
Q 001340 150 PHANSQEVYDVAAR 163 (1096)
Q Consensus 150 ~~~~q~~Vy~~~~~ 163 (1096)
+.++-.+|++.++.
T Consensus 22 ~~tt~~ell~~V~~ 35 (575)
T 2i1j_A 22 QTTTGKQLFDQVVK 35 (575)
T ss_dssp TTCBHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 34444444444443
No 285
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=48.04 E-value=45 Score=27.00 Aligned_cols=39 Identities=33% Similarity=0.323 Sum_probs=24.1
Q ss_pred HHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 001340 774 HVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKL 819 (1096)
Q Consensus 774 ~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL 819 (1096)
...|..++..|..+|++|.+ .-..+..|+..|.++|++|
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~-------~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLME-------TLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 34567777777777777766 4444555555555555554
No 286
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=47.87 E-value=1.7e+02 Score=26.85 Aligned_cols=40 Identities=28% Similarity=0.333 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001340 798 AKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESM 837 (1096)
Q Consensus 798 ~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~ 837 (1096)
..++......+++.+..++..|..+...+..++...+..+
T Consensus 62 ~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 62 REELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777766666666665555443
No 287
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=47.85 E-value=6.5 Score=44.05 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=18.7
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 51 AIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 3455667766 677899999999764
No 288
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=47.84 E-value=7 Score=42.34 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=18.0
Q ss_pred HHHHhcCCceeEEeeccCCCCccccc
Q 001340 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
+..+++|.+ ++..++||+|||.+.
T Consensus 25 i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 25 IPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 345667765 567789999999865
No 289
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=47.78 E-value=4.9 Score=47.38 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=28.7
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHH-HHhcC----CceeEEeeccCCCCccccc
Q 001340 140 TAYAFDRVFGPHANSQEVYDVAARPVVK-AAMEG----VNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G----~N~tIfaYGqTgSGKT~Tm 191 (1096)
..++||.|.+.+..-+++.+. +..+-. ..+.+ ....|+-||++|+|||+.+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~-v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEV-VEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHH-HHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHH-HHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 346888887754433333331 111100 11222 2245999999999999875
No 290
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=47.52 E-value=40 Score=27.98 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001340 809 LKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 841 (1096)
Q Consensus 809 lk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e 841 (1096)
...|..+|..|+.+|..|..++..++.++.++.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555777777777777777777777766554
No 291
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=47.30 E-value=4 Score=39.82 Aligned_cols=49 Identities=20% Similarity=0.535 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccc-----ceEEeCCCCcccchhhhh
Q 001340 1021 LVARLKARMQEMKEKEQKYQGNGDPNSHMCKVCFESPT-----AAILLPCRHFCLCKSCSL 1076 (1096)
Q Consensus 1021 ~~~~l~~~l~~~k~~~~~~~~~~~~~~~~C~IC~~~~~-----~~vl~pCgH~~~C~~C~~ 1076 (1096)
.+.+|+.+++.++...- ..+.+.|.+|..... ..+-.-|.|. +|..|..
T Consensus 35 ri~kL~~~l~~~k~~~~------~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~-VC~~C~~ 88 (134)
T 1zbd_B 35 RIGRLVDRLETMRKNVA------GDGVNRCILCGEQLGMLGSASVVCEDCKKN-VCTKCGV 88 (134)
T ss_dssp HHHHHHHHHHHHHHTCC------SCSSSBCSSSCCBCSTTSCCEEECTTTCCE-EETTSEE
T ss_pred HHHHHHHHHHHHHHHhc------cCCCccccccCCCcccccCCCCCCCCCCcc-cccccCC
Confidence 44556666666553321 135668999987663 2334455555 5666644
No 292
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=47.14 E-value=11 Score=41.00 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=21.9
Q ss_pred hhHHHHHHHhcCC-----ceeEEeeccCCCCccccc
Q 001340 161 AARPVVKAAMEGV-----NGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 161 ~~~plV~~~l~G~-----N~tIfaYGqTgSGKT~Tm 191 (1096)
+...++..++.|+ ...|+..|++|||||+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 4455666666553 246888999999999864
No 293
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=46.96 E-value=8 Score=45.09 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=27.7
Q ss_pred ecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCccccc
Q 001340 143 AFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 143 ~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
+||.|++ |+.+... ...+...+-.|.-..|+-||++|+|||+..
T Consensus 24 ~l~~ivG----q~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 24 NLAQYIG----QQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp STTTCCS----CHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CHHHhCC----cHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 3455544 4555421 233444444565568999999999999875
No 294
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=46.94 E-value=7.3 Score=46.28 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=16.6
Q ss_pred hcCCceeEEeeccCCCCcccccC
Q 001340 170 MEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 170 l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
-.|.+ |+..|+||||||.+|.
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHHH
T ss_pred hCCCE--EEEECCCCCCHHHHHH
Confidence 35665 6778999999999863
No 295
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=46.90 E-value=5.9 Score=44.03 Aligned_cols=42 Identities=19% Similarity=0.577 Sum_probs=30.8
Q ss_pred cccccccccccccceEEeC----CCC-cccchhhhhcC----CCCCCCccc
Q 001340 1046 NSHMCKVCFESPTAAILLP----CRH-FCLCKSCSLAC----SECPICRTK 1087 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~vl~p----CgH-~~~C~~C~~~~----~~CPiCr~~ 1087 (1096)
....|+||-..+.-.++.. =|+ ++.|..|...- .+||.|...
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 3458999999998877752 343 45899995332 469999986
No 296
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=46.15 E-value=76 Score=27.22 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=9.7
Q ss_pred HHHHHHHhhhHHHHHHHHHH
Q 001340 706 ILQEQLQNKCSENKKLQEKV 725 (1096)
Q Consensus 706 ~lqeqL~~a~~e~~~L~~~l 725 (1096)
.|++.|..++.||..|++.+
T Consensus 22 ~Lr~eL~~Ke~eI~~L~e~i 41 (75)
T 3a7o_A 22 ILQKELKSKEQEIRRLKEVI 41 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555554433
No 297
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=46.10 E-value=5.4 Score=43.92 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=14.8
Q ss_pred eeEEeeccCCCCccccc
Q 001340 175 GTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1096)
..|+-||++|+|||+.+
T Consensus 47 ~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSV 63 (331)
T ss_dssp CCEEEESCCCHHHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 36888999999999876
No 298
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=46.01 E-value=2.5e+02 Score=32.20 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 001340 680 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQ 735 (1096)
Q Consensus 680 ~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~ 735 (1096)
.+...+++.++.+..--+-...+..+.|+++|.. ++.+|+.|+.++.++
T Consensus 83 tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~-------~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIM-------NSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-------hHHHHHHHHHHHHHH
Confidence 4455555555554433222234466666666654 455555555555433
No 299
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=45.95 E-value=5.8 Score=45.08 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=17.2
Q ss_pred CCceeEEeeccCCCCcccccC
Q 001340 172 GVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.-...|...|+||||||++|.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 345678889999999999983
No 300
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=45.28 E-value=8.1 Score=43.46 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=18.4
Q ss_pred HHHHhcCCceeEEeeccCCCCccccc
Q 001340 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
+..++.|.| ++..++||||||.+.
T Consensus 46 i~~i~~~~~--~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRD--LMACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHccCCC--EEEEcCCCCHHHHHH
Confidence 445677876 467889999999864
No 301
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=45.15 E-value=99 Score=27.02 Aligned_cols=58 Identities=33% Similarity=0.330 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhHHhhhh-------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001340 766 ENEKLKLEHVQLSEENSG-------LHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 830 (1096)
Q Consensus 766 Eie~lk~e~~~L~Ee~~~-------L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~El 830 (1096)
|++.|-.|+..|.+-+.. |-.+.+.|+. --.++..|+..+..-.+++...+..+++|+
T Consensus 10 evEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~-------E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 10 EVENLILENTQLLETKNALNIVKNDLIAKVDELTC-------EKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444 4444444444 233455556666666666666666666554
No 302
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=44.96 E-value=2.4e+02 Score=31.92 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Q 001340 808 ELKNLAGEVTKLSLQNAKLEKELL 831 (1096)
Q Consensus 808 qlk~l~~ev~kL~~~n~qL~~Ele 831 (1096)
.|+.|..-|+++-.+.++|+..++
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445555555443
No 303
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=44.92 E-value=8.1 Score=46.26 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=19.3
Q ss_pred HHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 164 plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.++..+..|.+.++++ ++||||||++++
T Consensus 189 ~~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 189 RAVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 3444445576655554 999999999974
No 304
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=44.92 E-value=3.2e+02 Score=31.34 Aligned_cols=12 Identities=17% Similarity=0.338 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 001340 721 LQEKVNLLEQQL 732 (1096)
Q Consensus 721 L~~~l~~lk~~l 732 (1096)
||++|++++..+
T Consensus 402 ~~~~~~~~~~~~ 413 (471)
T 3mq9_A 402 LQQELTEAQKGF 413 (471)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhH
Confidence 444444444433
No 305
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=44.81 E-value=7.4 Score=42.60 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=15.4
Q ss_pred ceeEEeeccCCCCcccccC
Q 001340 174 NGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~ 192 (1096)
...++-||++|+|||+++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp CSEEEECSSTTSSHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHH
Confidence 3567888999999999863
No 306
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=44.72 E-value=93 Score=26.70 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001340 643 QNLEREIQEKRRQMRILEQRI 663 (1096)
Q Consensus 643 qkL~~elrdKeeei~~L~qki 663 (1096)
..|+.+++.|+.+|..|.-.+
T Consensus 21 ~~Lr~eL~~Ke~eI~~L~e~i 41 (75)
T 3a7o_A 21 AILQKELKSKEQEIRRLKEVI 41 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777776665554
No 307
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=44.39 E-value=52 Score=33.42 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHH-HhHHHHHHHHHh-hhHHHHHHHHHHHHHHHHH
Q 001340 680 QQTVTRLMSQCNEKAFELEIKS-ADNRILQEQLQN-KCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 680 ~~~v~~L~~~l~e~~~ele~k~-ae~~~lqeqL~~-a~~e~~~L~~~l~~lk~~l 732 (1096)
.+.+..|+..+.=+.-+|..+. .....|+.+|.- ++.-...++..++.||.++
T Consensus 110 ~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~~l 164 (185)
T 3r2p_A 110 QEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHL 164 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555554444444442 244555555422 2333345666666666666
No 308
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=44.14 E-value=4.2 Score=48.27 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=28.5
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHH-HHhcCC----ceeEEeeccCCCCccccc
Q 001340 140 TAYAFDRVFGPHANSQEVYDVAARPVVK-AAMEGV----NGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G~----N~tIfaYGqTgSGKT~Tm 191 (1096)
..++||.|.+.+..-..+.+ ++..+-. ..+..+ ...|+-||++|+|||+.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~-lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHH-HHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHH-HHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 34788888875433333332 1111110 122222 224899999999999876
No 309
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=43.98 E-value=6.4 Score=42.51 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=17.0
Q ss_pred cCCceeEEeeccCCCCcccccC
Q 001340 171 EGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 171 ~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.|....++-||++|+|||++..
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHHH
Confidence 3544458999999999998753
No 310
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=43.95 E-value=89 Score=28.52 Aligned_cols=65 Identities=14% Similarity=0.236 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHH
Q 001340 641 QIQNLEREIQEKRRQMRILEQRIIENGE---ASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSE 717 (1096)
Q Consensus 641 Q~qkL~~elrdKeeei~~L~qki~~s~~---~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e 717 (1096)
.++.|..++...+.++....||+..+.. ..|. ++|...+ ..-...
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPD----------------evNk~~~----------------~~R~~~ 53 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPD----------------DVNKSTL----------------QSRRAA 53 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------HHHHHHH----------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----------------HHHHHHH----------------HHHHHH
Confidence 4678889999999999999999864432 2222 2222211 222455
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 001340 718 NKKLQEKVNLLEQQLACQNG 737 (1096)
Q Consensus 718 ~~~L~~~l~~lk~~l~~~~e 737 (1096)
...|+.||..||+++.....
T Consensus 54 V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 54 VSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 66677788888888865554
No 311
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=43.75 E-value=43 Score=29.04 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001340 646 EREIQEKRRQMRILEQRII 664 (1096)
Q Consensus 646 ~~elrdKeeei~~L~qki~ 664 (1096)
..+|+.+++.|+.|+++|.
T Consensus 32 ~eELr~kd~~I~eLEk~L~ 50 (72)
T 3nmd_A 32 IEELRQRDALIDELELELD 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444555554443
No 312
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=43.57 E-value=1.9e+02 Score=27.55 Aligned_cols=39 Identities=8% Similarity=0.103 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHH
Q 001340 680 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSEN 718 (1096)
Q Consensus 680 ~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~ 718 (1096)
..+|.++...+.....+++-...-+..|+.+|.+++..+
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~ 73 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRG 73 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345555555555554455444455566666666555544
No 313
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=43.57 E-value=3.4e+02 Score=29.23 Aligned_cols=54 Identities=19% Similarity=0.256 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHH-HHhHHHHHHHHHhhhHHH-HHHHHHHHHHHHHH
Q 001340 679 MQQTVTRLMSQCNEKAFELEIK-SADNRILQEQLQNKCSEN-KKLQEKVNLLEQQL 732 (1096)
Q Consensus 679 ~~~~v~~L~~~l~e~~~ele~k-~ae~~~lqeqL~~a~~e~-~~L~~~l~~lk~~l 732 (1096)
++..+..++..|.-+.-+|..+ ......++++|.--..+. ..++..++.|+.+|
T Consensus 42 l~~~le~lr~~L~Py~~el~~~~~~~~eelr~kL~p~~~el~~~l~~~~eeLr~~L 97 (273)
T 3s84_A 42 IGDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTPYAQRMERVLRENADSLQASL 97 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4455666666666666666554 446677777775544333 44556666666666
No 314
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=42.73 E-value=7.4 Score=43.01 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=14.3
Q ss_pred EEeeccCCCCcccccC
Q 001340 177 VFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 177 IfaYGqTgSGKT~Tm~ 192 (1096)
++-||++|+|||+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8889999999999863
No 315
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=42.40 E-value=1.1e+02 Score=28.18 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=42.0
Q ss_pred CchhhHHHHHHHHHHHHHHHhhHHHHHHHhhhccCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001340 599 TSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQ-IQNLEREIQEKRRQMRILEQRII 664 (1096)
Q Consensus 599 ~~d~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~Q-~qkL~~elrdKeeei~~L~qki~ 664 (1096)
+..+|+-|++..+..-+.+.--..-|+.-.++.+.||++...+ .++=+..+...+..|..|.+.++
T Consensus 33 tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 33 TMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777666666666666777778888889887665 34444444555555555554444
No 316
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=42.22 E-value=9.2 Score=46.63 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=18.6
Q ss_pred HHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.|..++..-.. .+-.|+.|||||+|+.
T Consensus 197 AV~~al~~~~~-~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 197 AVLFALSQKEL-AIIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHHCSSE-EEEECCTTSCHHHHHH
T ss_pred HHHHHhcCCCc-eEEECCCCCCHHHHHH
Confidence 45555543333 4567999999999974
No 317
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=42.21 E-value=3.1e+02 Score=32.00 Aligned_cols=14 Identities=29% Similarity=0.544 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 001340 719 KKLQEKVNLLEQQL 732 (1096)
Q Consensus 719 ~~L~~~l~~lk~~l 732 (1096)
..+..+|..|+..+
T Consensus 178 ~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 178 DSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444455444444
No 318
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=42.16 E-value=9.7 Score=44.85 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=19.4
Q ss_pred HHHhcCCceeEEeeccCCCCccccc
Q 001340 167 KAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 167 ~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
..++.|.+..++..++||||||++.
T Consensus 151 ~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 151 PLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp HHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHcCCCCCEEEECCCCccHHHHH
Confidence 4566774556788899999999873
No 319
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=41.89 E-value=1.1e+02 Score=29.84 Aligned_cols=14 Identities=7% Similarity=0.053 Sum_probs=6.0
Q ss_pred HHHhHHhhhhHHHH
Q 001340 774 HVQLSEENSGLHVQ 787 (1096)
Q Consensus 774 ~~~L~Ee~~~L~~e 787 (1096)
...|..++..|..+
T Consensus 35 ~~~le~e~~kl~~e 48 (146)
T 2xnx_M 35 ALEKELEEKKKALE 48 (146)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 320
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=41.64 E-value=5.2 Score=35.23 Aligned_cols=30 Identities=27% Similarity=0.694 Sum_probs=24.0
Q ss_pred ccccccccccccceEEeCC----CCcccchhhhhc
Q 001340 1047 SHMCKVCFESPTAAILLPC----RHFCLCKSCSLA 1077 (1096)
Q Consensus 1047 ~~~C~IC~~~~~~~vl~pC----gH~~~C~~C~~~ 1077 (1096)
...|.+|.++--++-|+.| .|. ||..|...
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~Hk-FCFpCsr~ 48 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHK-FCFPCSRE 48 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCE-ECHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCe-eeccccHH
Confidence 3479999999888888888 466 99999543
No 321
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=41.35 E-value=9.4 Score=43.22 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=18.6
Q ss_pred HHHHHhcCCceeEEeeccCCCCcccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHT 190 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~T 190 (1096)
.+..+++|.| ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 3455677865 67889999999984
No 322
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=41.32 E-value=2.1e+02 Score=26.05 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001340 765 TENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQN 823 (1096)
Q Consensus 765 ~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n 823 (1096)
.|++.++.+...|..+...+..+.+.|..+..-.---.+.+.-++-.+.++..-+.++.
T Consensus 25 ~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~ 83 (96)
T 3q8t_A 25 QELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQM 83 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555544332222224444444444444443333333
No 323
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=41.28 E-value=59 Score=27.31 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001340 809 LKNLAGEVTKLSLQNAKLEKELLAARESMHSR 840 (1096)
Q Consensus 809 lk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~ 840 (1096)
...|..++..|+.+|..|..++...+.++..|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555554443
No 324
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=41.22 E-value=10 Score=42.19 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=19.1
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+..++.|.+ ++..++||+|||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4556777866 567789999999864
No 325
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=41.19 E-value=8.4 Score=48.62 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=27.7
Q ss_pred ecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 143 AFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 143 ~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.||.|++.+ + ....++..+..+....++-||++|+|||+.+.
T Consensus 168 ~ld~viGr~----~----~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 168 KLDPVIGRD----E----EIRRVIQILLRRTKNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CSCCCCSCH----H----HHHHHHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred CCcccCCcH----H----HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 566666543 2 23334454455655667889999999999874
No 326
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=40.96 E-value=8.6 Score=43.05 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=15.3
Q ss_pred ceeEEeeccCCCCccccc
Q 001340 174 NGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm 191 (1096)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999864
No 327
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=40.84 E-value=8.2 Score=42.41 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=16.8
Q ss_pred CCceeEEeeccCCCCccccc
Q 001340 172 GVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm 191 (1096)
..+..|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45678999999999999864
No 328
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=40.72 E-value=1e+02 Score=28.51 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHH
Q 001340 719 KKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQN 788 (1096)
Q Consensus 719 ~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~ 788 (1096)
..|.=+||.||.++ .+.++.+.+++........+++.+|.....|..+...|..++
T Consensus 26 sal~YqVdlLKD~L--------------Ee~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 26 TNFMYQVDTLKDML--------------LELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777777 456666666666666666677777777777777766665554
No 329
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=40.69 E-value=7.4 Score=41.84 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=16.5
Q ss_pred HHHhcCCceeEEeeccCCCCcccccC
Q 001340 167 KAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 167 ~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
..++.|.++ +..++||+|||.+..
T Consensus 123 ~~~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 123 FEGLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHHSEE--EECCCTTSCHHHHHH
T ss_pred HHHHhcCCe--EEEcCCCCCcHHHHH
Confidence 344555444 338999999998863
No 330
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=40.39 E-value=11 Score=40.65 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=17.1
Q ss_pred hcCCceeEEeeccCCCCcccccC
Q 001340 170 MEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 170 l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
-.|.-..++-||+.|+|||+...
T Consensus 38 ~~~~~~~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 38 KDGNMPHMIISGMPGIGKTTSVH 60 (323)
T ss_dssp HSCCCCCEEEECSTTSSHHHHHH
T ss_pred HcCCCCeEEEECcCCCCHHHHHH
Confidence 34443348999999999998763
No 331
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=39.95 E-value=11 Score=38.95 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=22.4
Q ss_pred hHHHHHHHhcC-C--ceeEEeeccCCCCcccccC
Q 001340 162 ARPVVKAAMEG-V--NGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 162 ~~plV~~~l~G-~--N~tIfaYGqTgSGKT~Tm~ 192 (1096)
+-+-+|.++.| + ...+.-+|++|+|||+.+.
T Consensus 9 G~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 9 GSKELDKLLQGGIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp SCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHH
T ss_pred CChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHH
Confidence 34557777754 2 3467889999999998863
No 332
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=39.55 E-value=1.9e+02 Score=25.09 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=14.6
Q ss_pred HHhHHHHHHHHHhhhHHHHHHHHHHHH
Q 001340 701 SADNRILQEQLQNKCSENKKLQEKVNL 727 (1096)
Q Consensus 701 ~ae~~~lqeqL~~a~~e~~~L~~~l~~ 727 (1096)
.++...+.++|.-+..+..+|+..+..
T Consensus 41 ~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 41 RSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344445555555555555555555543
No 333
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=39.49 E-value=13 Score=44.04 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=20.8
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+..++.|-+-.+++.++||||||.+.
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHHH
Confidence 455667665667889999999999873
No 334
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=39.11 E-value=16 Score=40.40 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.5
Q ss_pred ceeEEeeccCCCCccccc
Q 001340 174 NGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm 191 (1096)
...++-||+.|+|||+++
T Consensus 38 ~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSEEEEESCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999876
No 335
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=38.90 E-value=60 Score=35.89 Aligned_cols=56 Identities=14% Similarity=0.158 Sum_probs=27.6
Q ss_pred HHHHHHHHhhhhhhHHHHHH-HHhHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHhhc
Q 001340 681 QTVTRLMSQCNEKAFELEIK-SADNRILQEQLQNKCSEN-KKLQEKVNLLEQQLACQN 736 (1096)
Q Consensus 681 ~~v~~L~~~l~e~~~ele~k-~ae~~~lqeqL~~a~~e~-~~L~~~l~~lk~~l~~~~ 736 (1096)
+.+..++.++.-+.-++..+ ......++++|.--..++ ..+...++.|+.+|.--.
T Consensus 114 ~dlEelR~~L~Py~~el~~~l~~~~eelr~kL~Py~~EL~~~~~~~~eeLr~~L~py~ 171 (307)
T 2l7b_A 114 ADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQ 171 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 33333444444443333333 225556666665554444 345556667777764333
No 336
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=38.86 E-value=4.4e+02 Score=30.68 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 001340 806 AVELKNLAGEVTKLSLQNAKLEKELL 831 (1096)
Q Consensus 806 ~~qlk~l~~ev~kL~~~n~qL~~Ele 831 (1096)
...+..|...+++|.....+|+..+.
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555545555544443
No 337
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=38.44 E-value=11 Score=45.63 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=16.0
Q ss_pred ceeEEeeccCCCCcccccC
Q 001340 174 NGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~ 192 (1096)
+..++..|++|||||+|+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 3568899999999999864
No 338
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=38.35 E-value=11 Score=41.15 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=17.7
Q ss_pred HHHHhcCCceeEEeeccCCCCccccc
Q 001340 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
+..++.|. ..++..++||||||.+.
T Consensus 37 i~~~~~~~-~~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDE-YNIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTC-SEEEEECCSSSSHHHHH
T ss_pred HHHHhCCC-CCEEEECCCCChHHHHH
Confidence 44556663 24567899999999874
No 339
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=38.24 E-value=1.4e+02 Score=26.57 Aligned_cols=21 Identities=14% Similarity=0.193 Sum_probs=11.9
Q ss_pred hHHHHHHHHHhhhHHHHHHHH
Q 001340 703 DNRILQEQLQNKCSENKKLQE 723 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~ 723 (1096)
+...+++.|.++..+..+|..
T Consensus 64 ~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 64 DMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666543
No 340
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=38.15 E-value=12 Score=43.04 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=18.6
Q ss_pred HHHHhcCCceeEEeeccCCCCccccc
Q 001340 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
+..++.|.+ +++.++||||||.+.
T Consensus 87 i~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 87 IPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEECCCCCCchHHH
Confidence 445678866 677889999999864
No 341
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=38.10 E-value=44 Score=28.83 Aligned_cols=15 Identities=33% Similarity=0.322 Sum_probs=5.5
Q ss_pred HHHHHHHhHHhhhhH
Q 001340 770 LKLEHVQLSEENSGL 784 (1096)
Q Consensus 770 lk~e~~~L~Ee~~~L 784 (1096)
|+.....|...+..|
T Consensus 34 LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 34 LETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 342
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=38.05 E-value=7.4 Score=43.28 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=18.9
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4456677866 567799999999873
No 343
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=38.05 E-value=15 Score=44.39 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=19.8
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
+|..++.|.+ +++.++||+|||.+.
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHHH
Confidence 4556778877 677889999999863
No 344
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=37.98 E-value=2.4e+02 Score=25.82 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 705 RILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 705 ~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
..++++++.....+..++.++..++..+
T Consensus 16 ~~l~~~~~~l~~q~~~l~~~~~e~~~~~ 43 (117)
T 2zqm_A 16 ESYQQQLQLVVQQKQKVQLELTEAKKAL 43 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544444
No 345
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.85 E-value=1.7e+02 Score=27.89 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhHHhhhhHHHHH
Q 001340 765 TENEKLKLEHVQLSEENSGLHVQN 788 (1096)
Q Consensus 765 ~Eie~lk~e~~~L~Ee~~~L~~e~ 788 (1096)
.++...-+++..|..-|..|..+.
T Consensus 98 ~em~~ql~EYq~Ll~vKl~Ld~EI 121 (131)
T 3tnu_A 98 CEMEQQNQEYKILLDVKTRLEQEI 121 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666667777777766664
No 346
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=37.55 E-value=18 Score=44.81 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=27.0
Q ss_pred ecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 143 AFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 143 ~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.||.|.+. ++.. ..++..+..+....|+-||++|+|||...-
T Consensus 178 ~ld~iiG~----~~~i----~~l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 178 SLDPVIGR----SKEI----QRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp CSCCCCCC----HHHH----HHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccCc----hHHH----HHHHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 46666653 2222 234444445666678999999999998753
No 347
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=37.46 E-value=1.5e+02 Score=27.40 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=46.2
Q ss_pred HHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001340 774 HVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSR 840 (1096)
Q Consensus 774 ~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~ 840 (1096)
+..|-.|++.|.=+.+.|.+...-..+.+..+.-++++...+++.+......|..++...+..+.++
T Consensus 18 nAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 18 NAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQR 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777777766666667777777777777777777777777777777666665544
No 348
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=37.05 E-value=1.6e+02 Score=33.46 Aligned_cols=112 Identities=15% Similarity=0.186 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhccCCCCCchHH---HHHHHHHHHHHHHHHHHHHHHHHH----hcccCCCcchhHHH
Q 001340 607 VEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQ---IQNLEREIQEKRRQMRILEQRIIE----NGEASMANASMVDM 679 (1096)
Q Consensus 607 ~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~Q---~qkL~~elrdKeeei~~L~qki~~----s~~~s~~~~~~~e~ 679 (1096)
..|++...+++-.......|.+++- +.. +++...-++--++++.+-++-..+ ......+ ..+.-+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~e~-------~~k~~a~~af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~-~e~~~~ 203 (373)
T 3hhm_B 132 NTQFQEKSREYDRLYEEYTRTSQEI-------QMKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNE-KEIQRI 203 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC-SHHHHH
T ss_pred HHHHHhcccHHHHHHHHhccchHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCh-HHHHHH
Confidence 4555555555555444444444332 221 234555566677777666653321 1222222 122223
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001340 680 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLA 733 (1096)
Q Consensus 680 ~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~ 733 (1096)
......|++.++ ..-.-...|+++|......+.++++++..||-.+.
T Consensus 204 ~~n~~~l~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ 250 (373)
T 3hhm_B 204 MHNYDKLKSRIS-------EIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLI 250 (373)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHH
Confidence 333333443333 23344556677777777777777777777776663
No 349
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=37.03 E-value=76 Score=29.26 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLEQQLAC 734 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~ 734 (1096)
+...+++.+...+.|+..|+++++.|+-++..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777778888999999999999999844
No 350
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=37.01 E-value=5.5e+02 Score=29.71 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=61.9
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001340 749 SDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEK 828 (1096)
Q Consensus 749 ~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~ 828 (1096)
..+.+.+.++.......|-++|.|.+..-..+...+..-.+.+..--+..+--..+|...++.+.++-+.+.++...+..
T Consensus 333 ~~~~ve~~Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~ 412 (602)
T 1cii_A 333 VTEDVEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQ 412 (602)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 33445556667777777888888777777777777777777777777777777777888888887777777666666655
Q ss_pred HHHHHHHH
Q 001340 829 ELLAARES 836 (1096)
Q Consensus 829 Ele~~k~~ 836 (1096)
.....|+.
T Consensus 413 KiAE~KrK 420 (602)
T 1cii_A 413 KIAEEKRK 420 (602)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 54444433
No 351
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=37.01 E-value=13 Score=43.35 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=19.0
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+..++.|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 3455677876 567789999999874
No 352
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=36.87 E-value=1.7e+02 Score=26.07 Aligned_cols=48 Identities=19% Similarity=0.161 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001340 766 ENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 834 (1096)
Q Consensus 766 Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k 834 (1096)
+++.+......|..+..++..+++.... +-..|++-.-.|..|++..+
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ql~---------------------EYq~LlnvK~~Le~EIatYR 76 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQLD---------------------EYQELLDIKLALDMEIHAYR 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHhhHHHHHHHH
Confidence 3444555555555555555555554444 55666666666666665555
No 353
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=36.67 E-value=4.5e+02 Score=30.13 Aligned_cols=53 Identities=21% Similarity=0.213 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 680 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 680 ~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.+.-.+++.+...+.--+.......+.||.+|......+..|...|..|+...
T Consensus 83 ~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 83 TLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333355544444333333455677777777776666666666666555543
No 354
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=36.11 E-value=17 Score=45.49 Aligned_cols=51 Identities=18% Similarity=0.363 Sum_probs=35.2
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHH-HHhcCCc----eeEEeeccCCCCccccc
Q 001340 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAMEGVN----GTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G~N----~tIfaYGqTgSGKT~Tm 191 (1096)
...||.|-|-+..-+.+.+.+.-|+.. .++.++. ..|+-||+.|+|||...
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 356777777666666666655555542 3455554 36999999999999764
No 355
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=36.08 E-value=47 Score=25.21 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=20.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 001340 709 EQLQNKCSENKKLQEKVNLLEQQLACQ 735 (1096)
Q Consensus 709 eqL~~a~~e~~~L~~~l~~lk~~l~~~ 735 (1096)
+.|...+++...|++++..|++++..+
T Consensus 20 eelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777778888999998888543
No 356
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=35.95 E-value=1.1e+02 Score=29.79 Aligned_cols=59 Identities=25% Similarity=0.249 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001340 764 ETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQ 822 (1096)
Q Consensus 764 ~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~ 822 (1096)
+.+.+.++.+...|..+......+..+|..+..--+.+=..|+.+.+.+..+|+.|++.
T Consensus 24 ~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas 82 (135)
T 2e7s_A 24 IENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 82 (135)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556665555555666666666655555555556666667777777777654
No 357
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=35.44 E-value=13 Score=41.86 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.6
Q ss_pred ceeEEeeccCCCCccccc
Q 001340 174 NGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm 191 (1096)
...|+-||++|+|||+..
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457899999999999875
No 358
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=35.36 E-value=1.2e+02 Score=31.15 Aligned_cols=45 Identities=38% Similarity=0.411 Sum_probs=26.6
Q ss_pred chHHHHHHH----HHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHH
Q 001340 749 SDEYVDELR----KKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 793 (1096)
Q Consensus 749 ~ee~~~el~----~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~ 793 (1096)
.+.|-.++- ..|..=..|+++|..++..|.+|+..|+.+|+.|..
T Consensus 95 se~YWk~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 95 SSQYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455665552 223333456666666666666777666666666655
No 359
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=35.32 E-value=20 Score=37.98 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=13.7
Q ss_pred eeEEeeccCCCCcccc
Q 001340 175 GTVFAYGVTSSGKTHT 190 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~T 190 (1096)
..|+..|+.|||||+.
T Consensus 33 ~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTI 48 (253)
T ss_dssp EEEEEESCGGGTTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588999999999975
No 360
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=35.25 E-value=45 Score=28.08 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001340 807 VELKNLAGEVTKLSLQNAKLEKELLAARESMH 838 (1096)
Q Consensus 807 ~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~ 838 (1096)
..+..|-.+|..|..+|..|..+++.++..+.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777888899999999998888776654
No 361
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=35.08 E-value=15 Score=37.29 Aligned_cols=29 Identities=24% Similarity=0.278 Sum_probs=22.1
Q ss_pred HHHHHHhc-CCc--eeEEeeccCCCCcccccC
Q 001340 164 PVVKAAME-GVN--GTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 164 plV~~~l~-G~N--~tIfaYGqTgSGKT~Tm~ 192 (1096)
+-++.++. |+. ..+.-+|++|+|||..+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHH
Confidence 55777775 554 467889999999998763
No 362
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=35.02 E-value=15 Score=42.77 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=18.2
Q ss_pred HHHHhcCCceeEEeeccCCCCccccc
Q 001340 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
+..++.|.| ++..++||||||.+.
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHHH
Confidence 445677876 566789999999874
No 363
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=34.79 E-value=1.2e+02 Score=26.65 Aligned_cols=64 Identities=11% Similarity=0.206 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHhhhccCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001340 601 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQ-IQNLEREIQEKRRQMRILEQRII 664 (1096)
Q Consensus 601 d~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~Q-~qkL~~elrdKeeei~~L~qki~ 664 (1096)
.+|+-|++..+..-+.+.--..-|+.-.++.+.||++...+ .+.=+..+...+..|..|.+.|+
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlA 69 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELA 69 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666665666676777888889887664 33333344444444444444443
No 364
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=34.64 E-value=11 Score=47.66 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=15.4
Q ss_pred eeEEeeccCCCCccccc
Q 001340 175 GTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1096)
+.|+-||++|+|||+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 68999999999999875
No 365
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=34.49 E-value=1.3e+02 Score=31.05 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 677 VDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 677 ~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.++...|..+.+.+++|.....-...+...+.-+|..++..+..|+-+|..+..++
T Consensus 80 ~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~v 135 (242)
T 3c9i_A 80 ADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRV 135 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccc
Confidence 37788888888888888665555566788888888888888888888888888887
No 366
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=34.48 E-value=21 Score=43.69 Aligned_cols=46 Identities=26% Similarity=0.346 Sum_probs=32.3
Q ss_pred eecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccCC
Q 001340 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1096)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G 193 (1096)
|.|.. |.|..+|..-+.. ++..+-.|... ....|.|||||||||..
T Consensus 2 ~~~~~-~~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 2 FRYRG-PSPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCCS-CCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCC-CCCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 45554 4788888877664 45566666533 34679999999999963
No 367
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=34.44 E-value=17 Score=42.17 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=24.6
Q ss_pred CCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 151 HANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 151 ~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
+..|..++..+. ..+..| .+.++..|..|||||+++.
T Consensus 27 n~~Q~~av~~~~----~~i~~~-~~~~li~G~aGTGKT~ll~ 63 (459)
T 3upu_A 27 TEGQKNAFNIVM----KAIKEK-KHHVTINGPAGTGATTLTK 63 (459)
T ss_dssp CHHHHHHHHHHH----HHHHSS-SCEEEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHHH----HHHhcC-CCEEEEEeCCCCCHHHHHH
Confidence 446777665433 233333 3488999999999998763
No 368
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=34.30 E-value=14 Score=37.65 Aligned_cols=29 Identities=17% Similarity=0.099 Sum_probs=19.9
Q ss_pred HHHHHHhc-CCc--eeEEeeccCCCCcccccC
Q 001340 164 PVVKAAME-GVN--GTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 164 plV~~~l~-G~N--~tIfaYGqTgSGKT~Tm~ 192 (1096)
+.++.++. |+. ..+.-+|++|+|||+.+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHH
Confidence 44566664 332 356678999999998764
No 369
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=33.92 E-value=17 Score=37.78 Aligned_cols=26 Identities=35% Similarity=0.319 Sum_probs=18.3
Q ss_pred HHHHHHhcCCceeEEeeccCCCCccccc
Q 001340 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 164 plV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+++++-.|-- +.-.|+.|||||+.+
T Consensus 14 ~~l~~i~~Ge~--~~liG~nGsGKSTLl 39 (208)
T 3b85_A 14 HYVDAIDTNTI--VFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSTTHHH
T ss_pred HHHHhccCCCE--EEEECCCCCCHHHHH
Confidence 34555555644 445799999999876
No 370
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=33.89 E-value=15 Score=44.62 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=18.1
Q ss_pred HHHHhcCCceeEEeeccCCCCcccccC
Q 001340 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
|..++. +..++..|++|||||+|+.
T Consensus 189 v~~~l~--~~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 189 VKTVLQ--RPLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp HHHHHT--CSEEEEECCTTSCHHHHHH
T ss_pred HHHHhc--CCCeEEECCCCCCHHHHHH
Confidence 444443 3456789999999999964
No 371
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=33.80 E-value=15 Score=42.36 Aligned_cols=23 Identities=26% Similarity=0.105 Sum_probs=17.3
Q ss_pred HHHhcCCceeEEeeccCCCCccccc
Q 001340 167 KAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 167 ~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
..++.|.+ ++..|+||+|||++.
T Consensus 103 ~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 103 ERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHhcCC--EEEEeCCCCCHHHHH
Confidence 44556644 677899999999985
No 372
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=33.62 E-value=2.4e+02 Score=24.58 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=12.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001340 815 EVTKLSLQNAKLEKELLAARESMHSR 840 (1096)
Q Consensus 815 ev~kL~~~n~qL~~Ele~~k~~~~~~ 840 (1096)
+|.-|..-+..|+.+++.+.+.+...
T Consensus 42 ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 42 ELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555554444433
No 373
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=33.33 E-value=21 Score=38.01 Aligned_cols=46 Identities=15% Similarity=0.400 Sum_probs=27.1
Q ss_pred ccccccccccccceEEeC-CCCcccchhhhhc------CCCCCCCcccccceee
Q 001340 1047 SHMCKVCFESPTAAILLP-CRHFCLCKSCSLA------CSECPICRTKISDRLF 1093 (1096)
Q Consensus 1047 ~~~C~IC~~~~~~~vl~p-CgH~~~C~~C~~~------~~~CPiCr~~i~~~i~ 1093 (1096)
-..|.+|++-....+.-| |+|. |=..|... -..||.|+.....-++
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~-~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCE-ECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCcCcchhhHHhCCcccCccChH-HHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 448999965444333322 4444 44555322 2479999998766543
No 374
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=33.29 E-value=10 Score=34.68 Aligned_cols=40 Identities=23% Similarity=0.458 Sum_probs=26.1
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcC---CCCCCCcccccc
Q 001340 1046 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC---SECPICRTKISD 1090 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~---~~CPiCr~~i~~ 1090 (1096)
....|++|. ..+.+.=++. .|..|.... .-||-|.+++..
T Consensus 31 M~~~CP~Cq----~eL~~~g~~~-hC~~C~~~f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 31 MELHCPQCQ----HVLDQDNGHA-RCRSCGEFIEMKALCPDCHQPLQV 73 (101)
T ss_dssp CCCBCSSSC----SBEEEETTEE-EETTTCCEEEEEEECTTTCSBCEE
T ss_pred ccccCccCC----CcceecCCEE-ECccccchhhccccCcchhhHHHH
Confidence 335899994 4444443443 699996655 349999987653
No 375
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=33.16 E-value=4.7e+02 Score=27.85 Aligned_cols=30 Identities=10% Similarity=0.243 Sum_probs=21.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHh-hHHHHHHH
Q 001340 598 MTSDQMDLLVEQVKMLAGEIAF-SSSNLKRL 627 (1096)
Q Consensus 598 ~~~d~~d~l~eq~k~l~~e~a~-~~~~Lk~l 627 (1096)
...++++.+..+++.+..++.. +...+..+
T Consensus 36 ~dl~~v~~l~~~~~~f~~el~~~~~~~v~~v 66 (323)
T 3edv_A 36 QDYEHVTMLQERFREFARDTGNIGQERVDTV 66 (323)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3557788899999999888865 55555443
No 376
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=33.14 E-value=1.2e+02 Score=30.81 Aligned_cols=53 Identities=17% Similarity=0.247 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHH
Q 001340 641 QIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEI 699 (1096)
Q Consensus 641 Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v~~L~~~l~e~~~ele~ 699 (1096)
++..|..++.++..+|..|.. ...++.+.+..+..++..|..++.+.-+++..
T Consensus 86 ~~~~Lr~ql~akr~EL~aL~~------a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~ 138 (175)
T 3lay_A 86 QTSALRQQLISKRYEYNALLT------ASSPDTAKINAVAKEMESLGQKLDEQRVKRDV 138 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT------SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677777777766543 12333334445666666666666655554443
No 377
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=32.97 E-value=20 Score=36.61 Aligned_cols=29 Identities=21% Similarity=0.115 Sum_probs=18.8
Q ss_pred HHHHHHHhc--CCceeEEeeccCCCCccccc
Q 001340 163 RPVVKAAME--GVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 163 ~plV~~~l~--G~N~tIfaYGqTgSGKT~Tm 191 (1096)
..+++.+.. +-.-.|.-.|++|||||+.+
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 344444442 33345667899999999876
No 378
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=32.83 E-value=19 Score=42.98 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=20.3
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
++..++.|-+.-+++.++||||||.+.
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHHH
Confidence 455667555556788999999999863
No 379
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=32.63 E-value=1.5e+02 Score=26.22 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=11.4
Q ss_pred HHHHHHHhHHhhhhHHHHHHHHHH
Q 001340 770 LKLEHVQLSEENSGLHVQNQKLAE 793 (1096)
Q Consensus 770 lk~e~~~L~Ee~~~L~~e~~kl~~ 793 (1096)
-......-.+||.+|..+.+.+.+
T Consensus 25 RR~AL~eaL~EN~~Lh~~ie~~~e 48 (79)
T 2zxx_A 25 RRKALYEALKENEKLHKEIEQKDS 48 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555554444
No 380
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=32.59 E-value=1.3e+02 Score=27.48 Aligned_cols=66 Identities=11% Similarity=0.191 Sum_probs=40.3
Q ss_pred CchhhHHHHHHHHHHHHHHHhhHHHHHHHhhhccCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001340 599 TSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQ-IQNLEREIQEKRRQMRILEQRII 664 (1096)
Q Consensus 599 ~~d~~d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~Q-~qkL~~elrdKeeei~~L~qki~ 664 (1096)
+..+|+-|++..+..-+.+.--..-|+.-.++.+.||++...+ .+.=+..+...+..|..|.+.|+
T Consensus 3 ~M~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lA 69 (96)
T 2ic9_A 3 HMSTLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELA 69 (96)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666777766666666666666777778888999987765 33434444444444444444443
No 381
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=32.51 E-value=17 Score=44.30 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=19.3
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
+|..+++|.| ++..++||+|||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 4455677876 577899999999875
No 382
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=32.38 E-value=22 Score=36.17 Aligned_cols=28 Identities=21% Similarity=0.143 Sum_probs=18.9
Q ss_pred HHHHHHhc---CCceeEEeeccCCCCccccc
Q 001340 164 PVVKAAME---GVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 164 plV~~~l~---G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+++.+.. +-...|...|.+|||||+.+
T Consensus 9 ~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 9 FLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 34444443 23356778899999999875
No 383
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=32.35 E-value=1.8e+02 Score=25.83 Aligned_cols=30 Identities=43% Similarity=0.402 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhHHhhhhHHHHHHHHHH
Q 001340 764 ETENEKLKLEHVQLSEENSGLHVQNQKLAE 793 (1096)
Q Consensus 764 ~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~ 793 (1096)
..|+++|......+.+|...|+.+|+.|.+
T Consensus 37 L~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 37 LKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555544
No 384
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=32.28 E-value=12 Score=36.00 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=13.3
Q ss_pred eEEeeccCCCCccccc
Q 001340 176 TVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1096)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999843
No 385
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=32.27 E-value=90 Score=23.82 Aligned_cols=21 Identities=38% Similarity=0.262 Sum_probs=17.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHH
Q 001340 811 NLAGEVTKLSLQNAKLEKELL 831 (1096)
Q Consensus 811 ~l~~ev~kL~~~n~qL~~Ele 831 (1096)
..+++|.-|+.+|+.|+.++.
T Consensus 17 syidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 17 NYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 366789999999999988753
No 386
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=31.97 E-value=19 Score=36.75 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=20.4
Q ss_pred HHHHHHhc-CCc--eeEEeeccCCCCccccc
Q 001340 164 PVVKAAME-GVN--GTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 164 plV~~~l~-G~N--~tIfaYGqTgSGKT~Tm 191 (1096)
+-+|.++. |+. ..+.-+|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 45667774 432 45778899999999876
No 387
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=31.69 E-value=18 Score=45.48 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=35.1
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHH-HHhcC----CceeEEeeccCCCCccccc
Q 001340 140 TAYAFDRVFGPHANSQEVYDVAARPVVK-AAMEG----VNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G----~N~tIfaYGqTgSGKT~Tm 191 (1096)
..+.||.|.+.+..-+.+.+.+..|+.. .++.. ....|+-||++|||||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3578899888777666676655554432 22222 2246899999999999765
No 388
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=31.62 E-value=17 Score=41.11 Aligned_cols=25 Identities=20% Similarity=0.080 Sum_probs=18.4
Q ss_pred HHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.+..++.| .++..++||+|||.++.
T Consensus 17 ~i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 17 IYAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 34566777 45567899999998863
No 389
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=31.39 E-value=13 Score=37.00 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=14.2
Q ss_pred eEEeeccCCCCcccccC
Q 001340 176 TVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 176 tIfaYGqTgSGKT~Tm~ 192 (1096)
.+.-.|++|||||+.+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46678999999999874
No 390
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=31.18 E-value=13 Score=43.13 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.8
Q ss_pred HhcCCceeEEeeccCCCCccccc
Q 001340 169 AMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 169 ~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
++.|++..|...|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 68899999999999999999754
No 391
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=31.14 E-value=23 Score=38.97 Aligned_cols=16 Identities=31% Similarity=0.634 Sum_probs=14.3
Q ss_pred eEEeeccCCCCccccc
Q 001340 176 TVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1096)
.|.-.|++|||||+++
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5778899999999997
No 392
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.04 E-value=1.2e+02 Score=25.28 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhHHhhhhHHHHHHHHHH
Q 001340 764 ETENEKLKLEHVQLSEENSGLHVQNQKLAE 793 (1096)
Q Consensus 764 ~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~ 793 (1096)
+..++.|..+...|..+|..|..+...|..
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666655555555544
No 393
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=31.02 E-value=12 Score=42.42 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCcccccC
Q 001340 175 GTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm~ 192 (1096)
.-++..|+||||||++|.
T Consensus 36 ~~~~i~G~~G~GKs~~~~ 53 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAK 53 (392)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 345667999999999874
No 394
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=31.02 E-value=72 Score=25.98 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
|...|+..+.+...++..|.++++.|+.++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566666666777777777766
No 395
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=30.67 E-value=20 Score=42.40 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=18.5
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
++..++.| ..|+-||++|+|||+..
T Consensus 34 l~~al~~~--~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 34 CLLAALSG--ESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHT--CEEEEECCSSSSHHHHH
T ss_pred HHHHHhcC--CeeEeecCchHHHHHHH
Confidence 44444555 46788999999999875
No 396
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=30.64 E-value=1.3e+02 Score=24.90 Aligned_cols=29 Identities=21% Similarity=0.123 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhHHhhhhHHHHHHHHHH
Q 001340 765 TENEKLKLEHVQLSEENSGLHVQNQKLAE 793 (1096)
Q Consensus 765 ~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~ 793 (1096)
..++.|+.+...|..+|..|..++..|..
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544444444
No 397
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=30.44 E-value=12 Score=39.66 Aligned_cols=19 Identities=32% Similarity=0.254 Sum_probs=16.6
Q ss_pred ceeEEeeccCCCCcccccC
Q 001340 174 NGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~ 192 (1096)
...||..|..|+||||+|.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHH
Confidence 3568999999999999986
No 398
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=30.39 E-value=15 Score=37.62 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=13.9
Q ss_pred eeEEeeccCCCCccccc
Q 001340 175 GTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1096)
-.|.-.|++|||||.++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 35667899999999875
No 399
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=30.22 E-value=60 Score=27.06 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001340 808 ELKNLAGEVTKLSLQNAKLEKELLAARESMHSR 840 (1096)
Q Consensus 808 qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~ 840 (1096)
.+.+|-.+|..|+.+|..|..++..++.++...
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777777777777776665443
No 400
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=30.11 E-value=13 Score=40.68 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=16.7
Q ss_pred HHhcCCceeEEeeccCCCCccccc
Q 001340 168 AAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 168 ~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.++.|++..|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367899999999999999999765
No 401
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=29.92 E-value=1.1e+02 Score=27.38 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=23.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001340 812 LAGEVTKLSLQNAKLEKELLAARESMHSRGA 842 (1096)
Q Consensus 812 l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~ 842 (1096)
+..++..|+.+|.+|+.+++.++.++..+..
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447888888888888888888877776654
No 402
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=29.78 E-value=20 Score=43.53 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=18.2
Q ss_pred HHHHhcCCceeEEeeccCCCCccccc
Q 001340 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
+..++.|.| ++..++||||||...
T Consensus 22 i~~~l~g~~--~iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 22 ALPAMKGKN--TIICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Confidence 345667876 567789999999863
No 403
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=29.71 E-value=2.6e+02 Score=23.80 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.|..|..+|+++..||..|..=+..|+.+|
T Consensus 4 QNKeL~~kl~~Kq~EI~rLnvlvgslR~KL 33 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFELKKIAETLRSKL 33 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888999998888888888888
No 404
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=29.64 E-value=19 Score=42.57 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.0
Q ss_pred ceeEEeeccCCCCcccccC
Q 001340 174 NGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~ 192 (1096)
...|+-||++|+|||++..
T Consensus 77 ~~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3578899999999998863
No 405
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=29.60 E-value=41 Score=33.91 Aligned_cols=15 Identities=20% Similarity=0.611 Sum_probs=11.4
Q ss_pred CCCCCCcccccceee
Q 001340 1079 SECPICRTKISDRLF 1093 (1096)
Q Consensus 1079 ~~CPiCr~~i~~~i~ 1093 (1096)
..||+|..+-..+.+
T Consensus 154 ~~CP~Cg~~~~~F~~ 168 (170)
T 3pwf_A 154 EYCPVCGAPKEKFVV 168 (170)
T ss_dssp SBCTTTCCBGGGCEE
T ss_pred CCCCCCCCCHHHcee
Confidence 479999988766554
No 406
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.52 E-value=3.3e+02 Score=24.85 Aligned_cols=27 Identities=11% Similarity=0.112 Sum_probs=12.1
Q ss_pred HhHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001340 702 ADNRILQEQLQNKCSENKKLQEKVNLL 728 (1096)
Q Consensus 702 ae~~~lqeqL~~a~~e~~~L~~~l~~l 728 (1096)
.....+..++...+.+..++..-++.|
T Consensus 20 ~~~~~l~~q~~~l~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 20 QQLQLVVQQKQKVQLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445544444444444433333
No 407
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=29.51 E-value=4e+02 Score=26.45 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=24.7
Q ss_pred HHHHHHHhhHHHHHHHhhhccCCCCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHhccc
Q 001340 612 MLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQE-KRRQMRILEQRIIENGEA 669 (1096)
Q Consensus 612 ~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~Q~qkL~~elrd-Keeei~~L~qki~~s~~~ 669 (1096)
..++.|-...+.++.-.+.+.. +++...|..+++. +...|+.+-..+......
T Consensus 28 ~v~~~~w~Y~~q~~~~a~~~v~-----ql~~sel~qel~~~l~~~ld~l~~~~~~l~~~ 81 (165)
T 1gs9_A 28 LALGRFWDYLRWVQTLSEQVQE-----ELLSSQVTQELRALMDETMKELKAYKSELEEQ 81 (165)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHH-----HHHSSHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhHHHHHH-----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555432222221 2222245556555 555566665555444443
No 408
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=29.49 E-value=3.2e+02 Score=24.75 Aligned_cols=31 Identities=13% Similarity=0.242 Sum_probs=18.0
Q ss_pred HhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 702 ADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 702 ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.+.+.+-++|...+.+...+..+|..++...
T Consensus 18 ~eE~~L~~eL~~lEke~~~l~~el~~le~E~ 48 (96)
T 3q8t_A 18 LEEERLIQELEDVEKNRKVVAENLEKVQAEA 48 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3455555566666666666666666555555
No 409
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=29.43 E-value=16 Score=44.01 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=17.6
Q ss_pred CCceeEEeeccCCCCcccccC
Q 001340 172 GVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
-.++.++..|..|||||+|+.
T Consensus 20 ~~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 20 APRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp CCSSCEEEEECTTSCHHHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHH
Confidence 346678899999999999975
No 410
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=29.37 E-value=12 Score=42.83 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=15.6
Q ss_pred ceeEEeeccCCCCccccc
Q 001340 174 NGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm 191 (1096)
+.-++.+|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 466788999999999986
No 411
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=29.32 E-value=3.5e+02 Score=25.09 Aligned_cols=24 Identities=29% Similarity=0.070 Sum_probs=11.3
Q ss_pred HHhhHHHHHHHHHHHHHhHHhhhh
Q 001340 760 VQSQETENEKLKLEHVQLSEENSG 783 (1096)
Q Consensus 760 ~~~Q~~Eie~lk~e~~~L~Ee~~~ 783 (1096)
+..|..+++.++++...=.++...
T Consensus 49 ~~eq~~~le~lk~eL~~~~~el~~ 72 (107)
T 2no2_A 49 TQEQLEVLESLKQELATSQRELQV 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554443333333
No 412
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=28.80 E-value=15 Score=36.98 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=13.1
Q ss_pred eEEeeccCCCCccccc
Q 001340 176 TVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1096)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999876
No 413
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=28.72 E-value=20 Score=37.04 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=18.4
Q ss_pred HHHHhcC-C--ceeEEeeccCCCCccccc
Q 001340 166 VKAAMEG-V--NGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 166 V~~~l~G-~--N~tIfaYGqTgSGKT~Tm 191 (1096)
+|.++.| + ...+.-+|++|+|||..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 4555533 2 246778999999999875
No 414
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=28.69 E-value=1.6e+02 Score=26.14 Aligned_cols=33 Identities=24% Similarity=0.171 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001340 806 AVELKNLAGEVTKLSLQNAKLEKELLAARESMH 838 (1096)
Q Consensus 806 ~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~ 838 (1096)
-.|+++|-++|..|..++..|..+++.+++.+.
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666665543
No 415
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=28.68 E-value=49 Score=27.09 Aligned_cols=30 Identities=33% Similarity=0.335 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001340 808 ELKNLAGEVTKLSLQNAKLEKELLAARESM 837 (1096)
Q Consensus 808 qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~ 837 (1096)
-+.+|-.+|..|+.+|..|..++..++...
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666788889999999999888776543
No 416
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=28.54 E-value=3.5e+02 Score=24.82 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhccc--CCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001340 653 RRQMRILEQRIIENGEA--SMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQ 730 (1096)
Q Consensus 653 eeei~~L~qki~~s~~~--s~~~~~~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~ 730 (1096)
.++|..-++-|...... +.-......-+..+......+.++....-..-||...+--+|.++.+.....++.++.+++
T Consensus 6 ~eql~~te~Ai~~A~~aga~~~apEl~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeAka~~~Ka~~~~~el~~ 85 (98)
T 4fm3_A 6 LEQMRLTEQALEQAKAVGATDDVAELKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAESKVLTQKSKDQLGELDK 85 (98)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777444332 2221123333446666778888999999999999999999999888888877777777776
Q ss_pred HH
Q 001340 731 QL 732 (1096)
Q Consensus 731 ~l 732 (1096)
.+
T Consensus 86 ~I 87 (98)
T 4fm3_A 86 SL 87 (98)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 417
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=28.47 E-value=3e+02 Score=24.92 Aligned_cols=16 Identities=25% Similarity=0.189 Sum_probs=6.3
Q ss_pred HHhhHHHHHHHHHHHH
Q 001340 817 TKLSLQNAKLEKELLA 832 (1096)
Q Consensus 817 ~kL~~~n~qL~~Ele~ 832 (1096)
..|..-.-.|..|+..
T Consensus 68 q~LlnvKl~Le~EIat 83 (95)
T 3mov_A 68 EQLLDVKLALDMEISA 83 (95)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444444333
No 418
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=28.21 E-value=2.5e+02 Score=24.97 Aligned_cols=31 Identities=42% Similarity=0.402 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHhHHhhhhHHHHHHHHHH
Q 001340 763 QETENEKLKLEHVQLSEENSGLHVQNQKLAE 793 (1096)
Q Consensus 763 Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~ 793 (1096)
=..|+++|...+..|.+++..|+.+|+.|.+
T Consensus 44 aL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 44 ALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666665544
No 419
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=28.17 E-value=3.1e+02 Score=24.12 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001340 705 RILQEQLQNKCSENKKLQEKVNLLEQQ 731 (1096)
Q Consensus 705 ~~lqeqL~~a~~e~~~L~~~l~~lk~~ 731 (1096)
+.+++.+..+.+|+..|++.=+.|+.-
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G 40 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKG 40 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 345556666666666666555555443
No 420
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=28.02 E-value=15 Score=36.60 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=13.3
Q ss_pred eEEeeccCCCCccccc
Q 001340 176 TVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1096)
.|.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666799999999865
No 421
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=27.74 E-value=16 Score=39.55 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=15.9
Q ss_pred CceeEEeeccCCCCccccc
Q 001340 173 VNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 173 ~N~tIfaYGqTgSGKT~Tm 191 (1096)
|+-+|...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 4567888999999999765
No 422
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=27.60 E-value=25 Score=43.54 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=20.8
Q ss_pred HHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
+++.+.......++-||++|+|||+.+.
T Consensus 198 l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 198 AIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp HHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred HHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 4444445556668889999999999864
No 423
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=27.52 E-value=30 Score=42.84 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=15.3
Q ss_pred eeEEeeccCCCCccccc
Q 001340 175 GTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1096)
+.|+-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999876
No 424
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=27.47 E-value=98 Score=21.99 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=20.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 707 LQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 707 lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
|.+.|.....-..+||+.+|+|++-+
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777788999999998765
No 425
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=27.46 E-value=2.3e+02 Score=22.73 Aligned_cols=41 Identities=32% Similarity=0.293 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHH
Q 001340 765 TENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAA 805 (1096)
Q Consensus 765 ~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa 805 (1096)
.+.+.|+.|+..|.-|..-=..++.||..|.+.-|++.+.+
T Consensus 10 ~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 10 KQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 35567777777777776666677777777777777766655
No 426
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=27.43 E-value=40 Score=36.11 Aligned_cols=35 Identities=29% Similarity=0.317 Sum_probs=23.9
Q ss_pred HHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001340 696 ELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQ 730 (1096)
Q Consensus 696 ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~ 730 (1096)
+++...+.|+.|.+.|+++..++..|+++|++|++
T Consensus 62 ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 62 RIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444556677777777777777777777777654
No 427
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=27.42 E-value=18 Score=41.99 Aligned_cols=25 Identities=12% Similarity=0.005 Sum_probs=18.9
Q ss_pred HHHHhcCCceeEEeeccCCCCccccc
Q 001340 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
+..+++|.+. +++.|+||||||...
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~~ 36 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKRI 36 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTTH
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhHH
Confidence 3456777664 567799999999873
No 428
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=27.28 E-value=15 Score=36.75 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=12.6
Q ss_pred EEeeccCCCCccccc
Q 001340 177 VFAYGVTSSGKTHTM 191 (1096)
Q Consensus 177 IfaYGqTgSGKT~Tm 191 (1096)
|.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999876
No 429
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=27.25 E-value=1.1e+02 Score=27.61 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHH
Q 001340 765 TENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASA 804 (1096)
Q Consensus 765 ~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~a 804 (1096)
.-.+.+.++...|..||..|..+++.|..|....+.++.+
T Consensus 36 ~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556677777777777777777777755555555444
No 430
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=27.17 E-value=23 Score=42.68 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=18.9
Q ss_pred HHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.|..++. +..++..|..|||||+++.
T Consensus 197 Av~~~~~--~~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 197 VLDQLAG--HRLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp HHHHHTT--CSEEEEECCTTSCHHHHHH
T ss_pred HHHHHHh--CCEEEEEcCCCCCHHHHHH
Confidence 3444554 3567789999999999874
No 431
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=27.02 E-value=22 Score=44.59 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=18.2
Q ss_pred HHHHhcCCceeEEeeccCCCCcccccC
Q 001340 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
|..++. +..++..|+.|||||+|+.
T Consensus 369 v~~~l~--~~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 369 VSHVLQ--RPLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp HHHHTT--CSEEEEECSTTSSHHHHHH
T ss_pred HHHHhc--CCCEEEECCCCCCHHHHHH
Confidence 444444 3356789999999999975
No 432
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=26.90 E-value=26 Score=43.41 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=14.6
Q ss_pred eEEeeccCCCCccccc
Q 001340 176 TVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1096)
.|+-||++|+|||+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7999999999999875
No 433
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=26.84 E-value=23 Score=44.40 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=18.6
Q ss_pred HHHHHhcCCceeEEeeccCCCCcccccC
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.|..++.+ ..++..|+.|||||+|+.
T Consensus 364 Av~~~l~~--~~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 364 AVKTVLQR--PLSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp HHHHHHTS--SEEEEECCTTSCHHHHHH
T ss_pred HHHHhccC--CeEEEEcCCCCCHHHHHH
Confidence 34444543 456789999999999975
No 434
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=26.60 E-value=1.8e+02 Score=24.31 Aligned_cols=45 Identities=40% Similarity=0.410 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHhhhhhc
Q 001340 900 QREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKLKKEVG 952 (1096)
Q Consensus 900 erq~aLE~el~~k~~~eeEl~~~leE~kkk~~~Le~el~~~~~l~~~Lkke~~ 952 (1096)
++.+|--.- ..|+.--++|..++++++..+..|..++ +.|+.+++
T Consensus 17 NreAArrsR-~RK~~~~~~Le~~v~~L~~eN~~L~~ev-------~~Lr~~l~ 61 (63)
T 2dgc_A 17 NTEAARRSR-ARKLQRMKQLEDKVEELLSKNYHLENEV-------ARLKKLVG 61 (63)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHC--
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHh
Confidence 666655544 4555566788888999999999999999 88888765
No 435
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=26.59 E-value=22 Score=44.43 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=18.2
Q ss_pred HHHhcCCceeEEeeccCCCCccccc
Q 001340 167 KAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 167 ~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+.-.|....++..|+||||||...
T Consensus 382 ~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 382 NDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred hhccccCCCcEEEEcCCCCCHHHHH
Confidence 3333455556788999999999875
No 436
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=26.57 E-value=6.2e+02 Score=29.70 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=0.0
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHhhHHH-----HHHHhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001340 593 HPIGGMTSDQMDLLVEQVKMLAGEIAFSSSN-----LKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENG 667 (1096)
Q Consensus 593 ~~~~~~~~d~~d~l~eq~k~l~~e~a~~~~~-----Lk~l~e~~~~~~~~~~~Q~qkL~~elrdKeeei~~L~qki~~s~ 667 (1096)
+.....+.=++.++|+....+...+..+... + .++-.|..+.+....+++.|..+--
T Consensus 33 ~~~~~~pmlD~~~ir~n~~~v~~~l~~R~~~~~~~~~---------------~~~~~ld~~~r~~~~~~~~l~~~rn--- 94 (501)
T 1wle_A 33 EGYSALPLLDMESLCAYPEDAARALDLRKGELRSKDL---------------PGIISTWQELRQLREQIRSLEEEKE--- 94 (501)
T ss_dssp TTSSCCCCCCHHHHHHSHHHHHHHHHHHTCSCCGGGH---------------HHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CcCCCCCccCHHHHHhCHHHHHHHHHHcCCCcchhHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred ccCCCcchhHHHHHHHHHHHHhhh----hhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001340 668 EASMANASMVDMQQTVTRLMSQCN----EKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLL 728 (1096)
Q Consensus 668 ~~s~~~~~~~e~~~~v~~L~~~l~----e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~l 728 (1096)
.++++|.+++..-+ +..-+.+..-++.+.|.++|.+.+.+..++++++..+
T Consensus 95 ----------~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 95 ----------AVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp ----------HHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 437
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=26.50 E-value=19 Score=35.67 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=13.1
Q ss_pred eEEeeccCCCCcccc
Q 001340 176 TVFAYGVTSSGKTHT 190 (1096)
Q Consensus 176 tIfaYGqTgSGKT~T 190 (1096)
.|+-.|.+|||||+.
T Consensus 7 ~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 7 NIYLIGLMGAGKTSV 21 (185)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999974
No 438
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=26.45 E-value=27 Score=29.15 Aligned_cols=36 Identities=22% Similarity=0.598 Sum_probs=25.1
Q ss_pred ccccccccccceE---EeCCCCcccchhhh----hcCCCCCCCc
Q 001340 1049 MCKVCFESPTAAI---LLPCRHFCLCKSCS----LACSECPICR 1085 (1096)
Q Consensus 1049 ~C~IC~~~~~~~v---l~pCgH~~~C~~C~----~~~~~CPiCr 1085 (1096)
.|-.|.....+.. ---|++. ||.+|. ..+..||.|-
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~-FC~dCD~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNV-FCVDCDVFVHDSLHSCPGCI 59 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCC-BCHHHHHTTTTTSCSSSTTC
T ss_pred cccccCcccCCCccEECCccCcC-cccchhHHHHhhccCCcCCC
Confidence 5888887765433 2356776 999994 3457799993
No 439
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=26.40 E-value=17 Score=36.12 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=14.1
Q ss_pred eeEEeeccCCCCccccc
Q 001340 175 GTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1096)
..|+-.|+.|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778899999999865
No 440
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=26.33 E-value=19 Score=35.16 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=13.2
Q ss_pred eEEeeccCCCCcccc
Q 001340 176 TVFAYGVTSSGKTHT 190 (1096)
Q Consensus 176 tIfaYGqTgSGKT~T 190 (1096)
.|+..|..|||||+.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 578899999999984
No 441
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=26.16 E-value=3.6e+02 Score=24.19 Aligned_cols=96 Identities=15% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC--------CCchHHHHHHHHHHHhhHHHH
Q 001340 696 ELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQ--------GTSDEYVDELRKKVQSQETEN 767 (1096)
Q Consensus 696 ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~--------~e~ee~~~el~~~~~~Q~~Ei 767 (1096)
++......-..++.+++.....+..++.++..++..+.++.-.+....--. ...+++...+......=..+|
T Consensus 2 ~~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i 81 (107)
T 1fxk_A 2 NVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLRE 81 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHhhhhHHHHHHHH
Q 001340 768 EKLKLEHVQLSEENSGLHVQNQKL 791 (1096)
Q Consensus 768 e~lk~e~~~L~Ee~~~L~~e~~kl 791 (1096)
+.++.....+.++...|..++..+
T Consensus 82 ~~le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 82 KTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 442
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=26.15 E-value=16 Score=37.21 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=13.6
Q ss_pred eEEeeccCCCCccccc
Q 001340 176 TVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1096)
.|.-.|++|||||..|
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567799999999987
No 443
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=26.04 E-value=95 Score=34.56 Aligned_cols=53 Identities=17% Similarity=0.087 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 680 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 680 ~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
++.+++|+.++.+....+-...+....|+++|......+..|+.+|..|+..+
T Consensus 4 ~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555565555543222222244666777777766666666666666665554
No 444
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=26.01 E-value=13 Score=37.78 Aligned_cols=17 Identities=29% Similarity=0.264 Sum_probs=14.7
Q ss_pred eEEeeccCCCCcccccC
Q 001340 176 TVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 176 tIfaYGqTgSGKT~Tm~ 192 (1096)
.++-||+.|+|||+.+.
T Consensus 5 i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 5 LTVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56789999999999875
No 445
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=25.97 E-value=14 Score=38.84 Aligned_cols=19 Identities=26% Similarity=0.200 Sum_probs=15.8
Q ss_pred eeEEeeccCCCCcccccCC
Q 001340 175 GTVFAYGVTSSGKTHTMHG 193 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm~G 193 (1096)
..++-||.+|+|||..+++
T Consensus 13 ~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 5678899999999988753
No 446
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=25.80 E-value=18 Score=35.66 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=14.1
Q ss_pred eeEEeeccCCCCccccc
Q 001340 175 GTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1096)
..|+..|.+|||||+..
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 35788999999999854
No 447
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=25.76 E-value=20 Score=35.19 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCccccc
Q 001340 175 GTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1096)
..|+-.|.+|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999999864
No 448
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=25.76 E-value=27 Score=44.87 Aligned_cols=24 Identities=38% Similarity=0.379 Sum_probs=18.2
Q ss_pred HHHHHhcCCceeEEeeccCCCCcccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHT 190 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~T 190 (1096)
+|..++.|. .++..|+||||||.+
T Consensus 47 aI~~il~g~--~vlv~apTGsGKTlv 70 (997)
T 4a4z_A 47 AVYHLEQGD--SVFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHHTTC--EEEEECCTTSCSHHH
T ss_pred HHHHHHcCC--CEEEEECCCCcHHHH
Confidence 345667775 478899999999964
No 449
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=25.75 E-value=76 Score=23.66 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001340 804 AAAVELKNLAGEVTKLSLQNAKLEKE 829 (1096)
Q Consensus 804 aa~~qlk~l~~ev~kL~~~n~qL~~E 829 (1096)
+++...+.|..+...|+++..+|+..
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333444444444444444444443
No 450
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=25.48 E-value=8.3e+02 Score=28.23 Aligned_cols=132 Identities=11% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHH
Q 001340 604 DLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTV 683 (1096)
Q Consensus 604 d~l~eq~k~l~~e~a~~~~~Lk~l~e~~~~~~~~~~~Q~qkL~~elrdKeeei~~L~qki~~s~~~s~~~~~~~e~~~~v 683 (1096)
++|-+|-+....-|...+..| ...+++...+-..-..|-.++++...... +..-.+
T Consensus 54 glL~kqerdv~~rI~kLkn~L---------------~~~s~s~~~s~~y~~~~~~~lk~~~~q~~---------dndn~~ 109 (491)
T 1m1j_A 54 GIIDDTDQNYSQRIDNIRQQL---------------ADSQNKYKTSNRVIVETINILKPGLEGAQ---------QLDENY 109 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------HHHHHTTTHHHHHHHHHHHHHHHHHHHHH---------HHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHH---------------HHHHhhcchHHHHHHHHHHHHHHHHhhhc---------cchhHH
Q ss_pred HHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcC---CCCCCCCCCCCchHHHHHHHHHH
Q 001340 684 TRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNG---DKSAGSSGQGTSDEYVDELRKKV 760 (1096)
Q Consensus 684 ~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e---~~~~~~~~~~e~ee~~~el~~~~ 760 (1096)
..+..+|+++...|.++-.+.- ++|+....-+..++.+|++|+..+..+++ ...++.-.-..--+.+..+++++
T Consensus 110 ~e~S~eLe~ri~yIK~kVd~qi---~~IrvLq~~l~~q~skIQRLE~dI~~q~~~Cr~pC~r~~~y~VD~~~Ye~~QKqL 186 (491)
T 1m1j_A 110 GHVSTELRRRIVTLKQRVATQV---NRIKALQNSIQEQVVEMKRLEVDIDIKIRACKGSCARSFDYQVDKEGYDNIQKHL 186 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTBSSCCCCCCCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHhhhcHHHHHHHHHHH
Q ss_pred Hh
Q 001340 761 QS 762 (1096)
Q Consensus 761 ~~ 762 (1096)
.+
T Consensus 187 eQ 188 (491)
T 1m1j_A 187 TQ 188 (491)
T ss_dssp HH
T ss_pred HH
No 451
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=25.42 E-value=34 Score=38.70 Aligned_cols=16 Identities=31% Similarity=0.634 Sum_probs=14.3
Q ss_pred eEEeeccCCCCccccc
Q 001340 176 TVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1096)
.|.-.|++|||||+|+
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 5778899999999997
No 452
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=25.39 E-value=17 Score=36.59 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=12.8
Q ss_pred EEeeccCCCCccccc
Q 001340 177 VFAYGVTSSGKTHTM 191 (1096)
Q Consensus 177 IfaYGqTgSGKT~Tm 191 (1096)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999976
No 453
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=25.29 E-value=3.5e+02 Score=23.78 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001340 434 IKKYQREISSLKEELDQLK 452 (1096)
Q Consensus 434 i~~~~~ei~~Lk~el~~~~ 452 (1096)
-.+++..+..-+.||..++
T Consensus 13 Rrrl~E~~~q~qaEl~sLr 31 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALK 31 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 3445555555555655554
No 454
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=25.26 E-value=21 Score=41.58 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=16.6
Q ss_pred HHhcCCceeEEeeccCCCCcccccC
Q 001340 168 AAMEGVNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 168 ~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.++.|.+ ++..|+||+|||.+..
T Consensus 124 ~~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 124 EGLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp HHHHHSE--EEEECCSTTTHHHHHH
T ss_pred HHHhcCC--cEEEeCCCCCHHHHHH
Confidence 3445543 5677999999999864
No 455
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=25.06 E-value=38 Score=37.73 Aligned_cols=17 Identities=35% Similarity=0.473 Sum_probs=14.6
Q ss_pred eeEEeeccCCCCccccc
Q 001340 175 GTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1096)
..|.-.|++|+|||.++
T Consensus 130 ~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46677899999999987
No 456
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=25.00 E-value=8.2e+02 Score=27.97 Aligned_cols=30 Identities=10% Similarity=0.241 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
+...|+..|++.+..-.+...-|..++...
T Consensus 39 ~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~ 68 (411)
T 3ghg_C 39 DLQSLEDILHQVENKTSEVKQLIKAIQLTY 68 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 566667777777776677777777777777
No 457
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=25.00 E-value=6.6e+02 Score=29.05 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 001340 703 DNRILQEQLQNKCSENKKLQEKVNLLEQQLAC 734 (1096)
Q Consensus 703 e~~~lqeqL~~a~~e~~~L~~~l~~lk~~l~~ 734 (1096)
+-..|.++|+++.++|..++.-|+.++.++..
T Consensus 350 e~~~lrQRlddArNEItsaeSaInslqaqvSa 381 (602)
T 1cii_A 350 EWDKLRQRLLDARNKITSAESAVNSARNNLSA 381 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455577888888888888888877777743
No 458
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=24.93 E-value=3.5e+02 Score=27.14 Aligned_cols=12 Identities=33% Similarity=0.548 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 001340 721 LQEKVNLLEQQL 732 (1096)
Q Consensus 721 L~~~l~~lk~~l 732 (1096)
+++.++.++.++
T Consensus 109 ~~~~~e~lr~~l 120 (185)
T 3r2p_A 109 WQEEMELYRQKV 120 (185)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhHHHHHHHH
Confidence 445555555555
No 459
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=24.89 E-value=20 Score=33.16 Aligned_cols=34 Identities=29% Similarity=0.841 Sum_probs=25.5
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcC--CCCCCCccc
Q 001340 1049 MCKVCFESPTAAILLPCRHFCLCKSCSLAC--SECPICRTK 1087 (1096)
Q Consensus 1049 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~--~~CPiCr~~ 1087 (1096)
.|+|| +..+.|+.-.-+|.+|.+.. ..|.+|...
T Consensus 31 kC~iC-----Ds~Vrp~~~VrICdeCs~G~~~~rCIiCg~~ 66 (109)
T 2k0a_A 31 KCPIC-----DSYVRPKRKVRVCENCSFGKQAKNCIICNLN 66 (109)
T ss_dssp CCTTT-----CCCCCCCEECEEEHHHHTSSTTSBCTTTSSS
T ss_pred ccccc-----CCccCCcceEEECCcCCCCCcCCceEEcCCC
Confidence 79999 44555666666899998776 559999843
No 460
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=24.83 E-value=33 Score=42.22 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=25.6
Q ss_pred HHHhhhhHHHHHHH-hcCCceeEEeeccCCCCccccc
Q 001340 156 EVYDVAARPVVKAA-MEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 156 ~Vy~~~~~plV~~~-l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.||. ++......+ -.+.|-||+.-|.+|||||.+.
T Consensus 76 Hifa-iA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 76 HMYA-LANDAYRSMRQSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp CHHH-HHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred hHHH-HHHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 4665 333333333 3799999999999999999985
No 461
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=24.81 E-value=21 Score=39.33 Aligned_cols=17 Identities=41% Similarity=0.595 Sum_probs=14.2
Q ss_pred eeEEeeccCCCCccccc
Q 001340 175 GTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1096)
..|.-.|++|||||+++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35666799999999997
No 462
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=24.78 E-value=7.8e+02 Score=27.66 Aligned_cols=27 Identities=11% Similarity=0.313 Sum_probs=14.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001340 811 NLAGEVTKLSLQNAKLEKELLAARESM 837 (1096)
Q Consensus 811 ~l~~ev~kL~~~n~qL~~Ele~~k~~~ 837 (1096)
.|.+.+..-.+.+..+..+|.++|-++
T Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~lkp~l 249 (373)
T 3hhm_B 223 RLEEDLKKQAAEYREIDKRMNSIKPDL 249 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHH
Confidence 333444455555666666666666554
No 463
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=24.64 E-value=68 Score=34.32 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHH
Q 001340 808 ELKNLAGEVTKLSLQNAKLEK 828 (1096)
Q Consensus 808 qlk~l~~ev~kL~~~n~qL~~ 828 (1096)
+++.+..++.+|..++.+|..
T Consensus 76 ~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 76 TLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 444444488888888888866
No 464
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=24.45 E-value=2e+02 Score=22.20 Aligned_cols=36 Identities=31% Similarity=0.442 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHH
Q 001340 751 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHV 786 (1096)
Q Consensus 751 e~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~ 786 (1096)
.|+.+|.++...-..-+.+|+..++.|+-||..|..
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 355555544433333345555566666666665543
No 465
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=24.35 E-value=38 Score=38.30 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=22.5
Q ss_pred hhhHHHHHHH----hcCCceeEEeeccCCCCccccc
Q 001340 160 VAARPVVKAA----MEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 160 ~~~~plV~~~----l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.++..++..+ -.|.-..|+-+|+.|+|||+..
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHH
Confidence 3444444443 2566677899999999999875
No 466
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=24.31 E-value=29 Score=43.22 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=18.7
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.+..++.|.| ++..++||||||.+.
T Consensus 256 ~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 3445677866 567789999999874
No 467
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=24.16 E-value=3.6e+02 Score=23.93 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=35.3
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001340 748 TSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLE 827 (1096)
Q Consensus 748 e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~~e~~kl~~e~~~~k~la~aa~~qlk~l~~ev~kL~~~n~qL~ 827 (1096)
-++.|-.++- ++-......-.+||.+|..+.+.+.+ ++..|..+|.+|.
T Consensus 17 pse~YWk~lA----------E~Rr~AL~eaL~EN~~Lh~~ie~~~e---------------------Ei~~Lk~en~~L~ 65 (83)
T 1wlq_A 17 PSSQYWKEVA----------EQRRKALYEALKENEKLHKEIEQKDS---------------------EIARLRKENKDLA 65 (83)
T ss_dssp TTCTHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHTH
T ss_pred CcHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
Confidence 3455666555 44455556666777777777777766 6666666776666
Q ss_pred HHHHHHH
Q 001340 828 KELLAAR 834 (1096)
Q Consensus 828 ~Ele~~k 834 (1096)
+=++..+
T Consensus 66 elA~~~q 72 (83)
T 1wlq_A 66 EVAEHVQ 72 (83)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6544444
No 468
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=24.10 E-value=5.1e+02 Score=25.29 Aligned_cols=45 Identities=9% Similarity=0.094 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 800 ELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 844 (1096)
Q Consensus 800 ~la~aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qi 844 (1096)
..|.-+.-....++.++.-++.+..+-...++.+...+...+..+
T Consensus 66 ~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL 110 (147)
T 2b9c_A 66 HIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEL 110 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444444444444333
No 469
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=23.94 E-value=2.5e+02 Score=24.89 Aligned_cols=21 Identities=10% Similarity=0.338 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001340 644 NLEREIQEKRRQMRILEQRII 664 (1096)
Q Consensus 644 kL~~elrdKeeei~~L~qki~ 664 (1096)
.|..+|...+.++..|...|.
T Consensus 26 ~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555554
No 470
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=23.85 E-value=28 Score=44.32 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=18.3
Q ss_pred HHHHhcCCceeEEeeccCCCCccccc
Q 001340 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
+..++.|.| ++..++||||||.+.
T Consensus 257 i~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCC--EEEEeCCCchHHHHH
Confidence 345577876 566789999999874
No 471
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=23.75 E-value=2.6e+02 Score=23.04 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHhhhhhcC
Q 001340 898 RKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKLKKEVGS 953 (1096)
Q Consensus 898 ~~erq~aLE~el~~k~~~eeEl~~~leE~kkk~~~Le~el~~~~~l~~~Lkke~~~ 953 (1096)
..++++|-..- ..|.....+|..+++++......|..++ ..|+.|...
T Consensus 7 ~rNr~AA~k~R-~rKk~~~~~Le~~v~~L~~~n~~L~~~v-------~~L~~e~~~ 54 (62)
T 1jnm_A 7 MRNRIAASKSR-KRKLERIARLEEKVKTLKAQNSELASTA-------NMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHT
T ss_pred HHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 34566555433 4555666778888888888888888888 888887754
No 472
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=23.73 E-value=21 Score=35.85 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=13.4
Q ss_pred eEEeeccCCCCccccc
Q 001340 176 TVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1096)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999865
No 473
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=23.68 E-value=1.3e+02 Score=21.23 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001340 704 NRILQEQLQNKCSENKKLQEKVNLLEQ 730 (1096)
Q Consensus 704 ~~~lqeqL~~a~~e~~~L~~~l~~lk~ 730 (1096)
.+.|......+++++-.|+.++..|+.
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456666777888888888888887764
No 474
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=23.59 E-value=34 Score=38.89 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHH-----HhhhcCCCCCcccccccccccccc-----eEEeCCCCcccchhhhhcCCCCCCCc
Q 001340 1020 PLVARLKARMQEMKEK-----EQKYQGNGDPNSHMCKVCFESPTA-----AILLPCRHFCLCKSCSLACSECPICR 1085 (1096)
Q Consensus 1020 ~~~~~l~~~l~~~k~~-----~~~~~~~~~~~~~~C~IC~~~~~~-----~vl~pCgH~~~C~~C~~~~~~CPiCr 1085 (1096)
.|+..+...+..+++. .|.+....+..++.|.+|..-... .-.--||.. +|..|....+.||.-.
T Consensus 325 ~W~~~i~~ai~~~~~~~~~~~~h~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~-~h~~C~~~~~~C~~~~ 399 (406)
T 2vrw_B 325 KWMEQFEMAISNIYPENATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAP-AHKECLGRVPPCGRHG 399 (406)
T ss_dssp HHHHHHHHHHHHHSCTTTTGGGCCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCE-ECGGGGGGSCCC----
T ss_pred HHHHHHHHHHhhhhhccccCCCCCCccccCCCCCCCccccchhceeCCCCCCCCCCcCc-cchhhhhhCCCCCCCc
Confidence 4566666555554422 244555566788899999543321 122346665 6777777766454433
No 475
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.59 E-value=1.4e+02 Score=34.03 Aligned_cols=57 Identities=11% Similarity=0.180 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 676 MVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 676 ~~e~~~~v~~L~~~l~e~~~ele~k~ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
+.++..++..|..+..+..-+++...++.+.++++|...+.....|..++..+|..+
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 335555566665555555555555556777778888888888888888888777554
No 476
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=23.54 E-value=36 Score=42.34 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=25.8
Q ss_pred HHHhhhhHHHHHHH-hcCCceeEEeeccCCCCccccc
Q 001340 156 EVYDVAARPVVKAA-MEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 156 ~Vy~~~~~plV~~~-l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
.||. ++......+ -.+.|-||+..|.+|||||.+.
T Consensus 154 Hifa-iA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 154 HIFA-ISDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp CHHH-HHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred cHHH-HHHHHHHHHHhhcCCcEEEEecCCCCcchHHH
Confidence 4665 333333333 3799999999999999999985
No 477
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=23.52 E-value=24 Score=36.52 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=9.2
Q ss_pred eEEeeccCCCCccccc
Q 001340 176 TVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1096)
.|.-.|++|||||..+
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999886
No 478
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=23.50 E-value=23 Score=43.13 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=17.4
Q ss_pred CceeEEeeccCCCCcccccC
Q 001340 173 VNGTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 173 ~N~tIfaYGqTgSGKT~Tm~ 192 (1096)
.++.++..|..|||||+||.
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHH
Confidence 46788899999999999975
No 479
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=23.44 E-value=52 Score=35.96 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=14.0
Q ss_pred eEEeeccCCCCcccccC
Q 001340 176 TVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 176 tIfaYGqTgSGKT~Tm~ 192 (1096)
.|...|.+|+|||+++.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56667999999999874
No 480
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=23.41 E-value=3.9e+02 Score=23.71 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=20.3
Q ss_pred HhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 702 ADNRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 702 ae~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
.+...|+.||.+++..+..|.+.-..|..++
T Consensus 49 ~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l 79 (89)
T 3bas_A 49 EQKNDLFGSMKQLEDKVEELLSKNYHLENEV 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4555666667777777777766666666665
No 481
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=23.30 E-value=43 Score=36.47 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=23.1
Q ss_pred hHHHhhhhHHHHHHHh--cCCceeEEeeccCCCCccccc
Q 001340 155 QEVYDVAARPVVKAAM--EGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 155 ~~Vy~~~~~plV~~~l--~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
..+++.++..+..... .+-...|.-.|++|||||+..
T Consensus 10 ~~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 10 DYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHH
Confidence 3455555555444322 233456777899999999875
No 482
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=23.29 E-value=3.2e+02 Score=24.14 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhHHhhhhHHHHH
Q 001340 765 TENEKLKLEHVQLSEENSGLHVQN 788 (1096)
Q Consensus 765 ~Eie~lk~e~~~L~Ee~~~L~~e~ 788 (1096)
.+++..-+++..|..-|..|..+.
T Consensus 49 ~e~~~ql~EYq~LlnvK~~Le~EI 72 (86)
T 1x8y_A 49 ARMQQQLDEYQELLDIKLALDMEI 72 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344566667777777777777665
No 483
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=23.28 E-value=18 Score=42.76 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=18.8
Q ss_pred HHHHHhcCCceeEEeeccCCCCccccc
Q 001340 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
+|..+++|.+ ++..++||+|||.+.
T Consensus 33 ~i~~il~g~d--~lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 33 IIDTVLSGRD--CLVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCcHHHHHH
Confidence 4556778876 456689999999864
No 484
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=23.22 E-value=3.8e+02 Score=23.50 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=7.2
Q ss_pred HHHHhhHHHHHHHHHHHH
Q 001340 815 EVTKLSLQNAKLEKELLA 832 (1096)
Q Consensus 815 ev~kL~~~n~qL~~Ele~ 832 (1096)
+-..|++-.-.|..|+..
T Consensus 55 EYq~LlnvK~~Ld~EIat 72 (84)
T 1gk4_A 55 EYQDLLNVKMALDIEIAT 72 (84)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHH
Confidence 333344444444444333
No 485
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=23.20 E-value=24 Score=32.09 Aligned_cols=75 Identities=20% Similarity=0.158 Sum_probs=29.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHhHHhhhhHH
Q 001340 706 ILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLH 785 (1096)
Q Consensus 706 ~lqeqL~~a~~e~~~L~~~l~~lk~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~lk~e~~~L~Ee~~~L~ 785 (1096)
-|..+|..|+.-+...+..||.|++...+..+ ..+.+.-|++.+.-+....+.=......+.+|+..|.
T Consensus 21 ~L~~~L~~AEeaL~~KQ~~ideLKe~i~q~~~-----------~~E~i~vL~aQ~~iY~~DF~aERaaREk~~~EKe~L~ 89 (96)
T 3fx0_A 21 DLKQQLQQAEEALVAKQEVIDKLKEEAEQHKI-----------VMETVPVLKAQADIYKADFQAERQAREKLAEKKELLQ 89 (96)
T ss_dssp -----CCSSTTTTTTTTTHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44555555554444445555555544422211 1133334444444444444444555666667776666
Q ss_pred HHHHHH
Q 001340 786 VQNQKL 791 (1096)
Q Consensus 786 ~e~~kl 791 (1096)
.++..|
T Consensus 90 ~ql~~l 95 (96)
T 3fx0_A 90 EQLEQL 95 (96)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 655443
No 486
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=23.18 E-value=57 Score=30.44 Aligned_cols=41 Identities=17% Similarity=0.328 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH------HHHH--HHHHHHHH-HHhhh
Q 001340 809 LKNLAGEVTKLSLQNAKLEKELLA------ARES--MHSRGAAM-QTVNG 849 (1096)
Q Consensus 809 lk~l~~ev~kL~~~n~qL~~Ele~------~k~~--~~~~e~qi-q~v~~ 849 (1096)
.++|.+++.+|+.+|..|...+.. ..+. .++.++.| +||+.
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~ 59 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRA 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHH
Confidence 467888999999999999998752 1111 23445555 88776
No 487
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=23.12 E-value=21 Score=35.48 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=13.4
Q ss_pred eEEeeccCCCCccccc
Q 001340 176 TVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1096)
.|.-.|+.|||||+.+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4567899999999876
No 488
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=23.12 E-value=4.2e+02 Score=23.89 Aligned_cols=62 Identities=10% Similarity=0.093 Sum_probs=38.3
Q ss_pred HHHHhHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHhhcCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHH-HHHHHH
Q 001340 699 IKSADNRILQEQLQNKCSENKKLQEKVNLL--EQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEK-LKLEHV 775 (1096)
Q Consensus 699 ~k~ae~~~lqeqL~~a~~e~~~L~~~l~~l--k~~l~~~~e~~~~~~~~~~e~ee~~~el~~~~~~Q~~Eie~-lk~e~~ 775 (1096)
.+.+..+.++..|.+|..-+..+.-++..+ -.. ....+++++..++.+++. ++++..
T Consensus 31 ~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~--------------------~R~~~~~klr~Yk~dl~~~lk~~lk 90 (97)
T 3onj_A 31 QRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDAS--------------------ERATYKAKLREWKKTIQSDIKRPLQ 90 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--------------------HHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666665554 211 123556777777888888 888777
Q ss_pred HhHHh
Q 001340 776 QLSEE 780 (1096)
Q Consensus 776 ~L~Ee 780 (1096)
.|.+.
T Consensus 91 ~l~d~ 95 (97)
T 3onj_A 91 SLVDS 95 (97)
T ss_dssp HHHHS
T ss_pred Hhhhc
Confidence 77653
No 489
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=23.11 E-value=21 Score=39.15 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=14.8
Q ss_pred eeEEeeccCCCCcccccC
Q 001340 175 GTVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm~ 192 (1096)
..|...|++|+|||+|+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 356677999999999974
No 490
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=23.10 E-value=40 Score=30.42 Aligned_cols=44 Identities=20% Similarity=0.740 Sum_probs=25.5
Q ss_pred cccccccccccccc----eEEeCCCCc--ccchhhhh-----cCCCCCCCccccc
Q 001340 1046 NSHMCKVCFESPTA----AILLPCRHF--CLCKSCSL-----ACSECPICRTKIS 1089 (1096)
Q Consensus 1046 ~~~~C~IC~~~~~~----~vl~pCgH~--~~C~~C~~-----~~~~CPiCr~~i~ 1089 (1096)
+...|.||-+..-- -+|.-|..- .+|..|.. ..+.||.|.....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 34589999775211 144333322 25666632 2256999998875
No 491
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=22.94 E-value=1.5e+02 Score=21.71 Aligned_cols=29 Identities=10% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 704 NRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 704 ~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
+.+|.+...+.-.++.+|+.+|.+||.-+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHH
No 492
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=22.91 E-value=16 Score=30.79 Aligned_cols=38 Identities=13% Similarity=0.408 Sum_probs=30.9
Q ss_pred hhhcCCCCCcccccccccccccceEEeCCCCcccchhhhhcC
Q 001340 1037 QKYQGNGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC 1078 (1096)
Q Consensus 1037 ~~~~~~~~~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~ 1078 (1096)
|.|....+..++.|-+| ...+.+.-.++..|..|...+
T Consensus 13 H~F~~~~~~~pt~C~~C----~~~l~Gl~~qg~~C~~C~~~~ 50 (65)
T 2enz_A 13 HRFKVYNYKSPTFCEHC----GTLLWGLARQGLKCDACGMNV 50 (65)
T ss_dssp CCEEECCCCSCCBCSSS----CCBCCCSSSCSEEESSSCCEE
T ss_pred CccEeEcCCCCcCchhc----ChhheecCCcccccCCCCCcc
Confidence 66777788889999999 777766677888999997665
No 493
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=22.86 E-value=1.5e+02 Score=26.11 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001340 804 AAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 844 (1096)
Q Consensus 804 aa~~qlk~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e~qi 844 (1096)
.....-..+..++..|+.+|.+|+.+++.++.++..+...+
T Consensus 33 krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=22.86 E-value=38 Score=42.30 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=26.1
Q ss_pred hHHHhhhhHHHHHHH-hcCCceeEEeeccCCCCccccc
Q 001340 155 QEVYDVAARPVVKAA-MEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 155 ~~Vy~~~~~plV~~~-l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
-.||. ++......+ -.+.|-||+.-|.+|||||.+.
T Consensus 121 PHifa-iA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 121 PHVFA-IADKAFRDMKVLKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp SCHHH-HHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred chHHH-HHHHHHHHHHhcCCCcEEEEcCCCCCCceehH
Confidence 34665 333333333 3699999999999999999885
No 495
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=22.73 E-value=1.1e+02 Score=22.73 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001340 810 KNLAGEVTKLSLQNAKLEKELLAARESMHSRG 841 (1096)
Q Consensus 810 k~l~~ev~kL~~~n~qL~~Ele~~k~~~~~~e 841 (1096)
.-|-++|+.|...|..|+.|.+.+|......+
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 45667888899999999999888887776554
No 496
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=22.73 E-value=28 Score=39.97 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=13.9
Q ss_pred eEEeeccCCCCccccc
Q 001340 176 TVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1096)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4788999999999984
No 497
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=22.72 E-value=22 Score=36.76 Aligned_cols=17 Identities=41% Similarity=0.409 Sum_probs=13.8
Q ss_pred eEEeeccCCCCcccccC
Q 001340 176 TVFAYGVTSSGKTHTMH 192 (1096)
Q Consensus 176 tIfaYGqTgSGKT~Tm~ 192 (1096)
.+.-+|++|||||..+.
T Consensus 32 ~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 45568999999998763
No 498
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=22.62 E-value=21 Score=40.24 Aligned_cols=21 Identities=33% Similarity=0.275 Sum_probs=15.2
Q ss_pred HhcCCceeEEeeccCCCCccccc
Q 001340 169 AMEGVNGTVFAYGVTSSGKTHTM 191 (1096)
Q Consensus 169 ~l~G~N~tIfaYGqTgSGKT~Tm 191 (1096)
+-.|.+ |.-.|+||||||+++
T Consensus 172 i~~G~~--i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERV--IVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCC--EEEEESSSSCHHHHH
T ss_pred HhcCCE--EEEECCCCCCHHHHH
Confidence 335654 444599999999986
No 499
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=22.60 E-value=1.5e+02 Score=21.83 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001340 704 NRILQEQLQNKCSENKKLQEKVNLLEQQL 732 (1096)
Q Consensus 704 ~~~lqeqL~~a~~e~~~L~~~l~~lk~~l 732 (1096)
+.+|.+...+.-.++.+|+.+|.+||.-+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
No 500
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=22.57 E-value=21 Score=43.04 Aligned_cols=64 Identities=11% Similarity=0.274 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHH-----HHHhhhcCCCCCcccccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccc
Q 001340 1019 EPLVARLKARMQEMK-----EKEQKYQGNGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKI 1088 (1096)
Q Consensus 1019 ~~~~~~l~~~l~~~k-----~~~~~~~~~~~~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~~~CPiCr~~i 1088 (1096)
..|+..+...+.... ...|.|....+..++.|.+| ...+.+.-.++..|..|...+ |.-|...+
T Consensus 496 ~~Wi~~I~~ai~~~~~~~~~~~~H~F~~~~~~~~t~C~~C----~~~l~gl~~qg~~C~~C~~~v--Hk~C~~~v 564 (587)
T 3ky9_A 496 KKWMEQFEMAISNIYPENATANGHDFQMFSFEETTSCKAC----QMLLRGTFYQGYRCHRCRASA--HKECLGRV 564 (587)
T ss_dssp HHHHHHHHHHHHHHSCTTTTGGGCCEEEECCSSCCBCTTT----CSBCCSSSCCEEEETTTCCEE--CSGGGGGS
T ss_pred HHHHHHHHHHhhhhccccccccCCceeEEeCCCCcccccc----cccccccccCCcCCCCCCCcc--chhhhhcC
Done!