BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001341
(1096 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 124/483 (25%), Positives = 190/483 (39%), Gaps = 100/483 (20%)
Query: 362 EDLAQVEYILTDKTGTLTENRM----------------IFRRCCIGGIFYGNETGDALKD 405
E L I +DKTGTLT N+M + + G Y E G+ LK+
Sbjct: 340 ETLGCTSVICSDKTGTLTTNQMSVCKMFIIDRIDGDLCLLNEFSVTGSTYAPE-GEVLKN 398
Query: 406 VGLLNAITSGSPD-VIRFLTVMAVCNTVIPAKSKAGAILYKAQSQDEEALVHAAAQLHMV 464
+ SG D ++ T+ A+CN ++ I K E AL ++++
Sbjct: 399 D---KPVRSGQYDGLVELATICALCNDSSLDFNETKGIYEKVGEATETALTTLVEKMNVF 455
Query: 465 LVN-KNASILEIKFNGSVLQYEILE---TLEFTSDRKRMSVVVKDCHS----GNISLLSK 516
+N S +E + + ++++ TLEF+ DRK MSV S GN + K
Sbjct: 456 NTEVRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSRAAVGN-KMFVK 514
Query: 517 GADEAILP---YAHAGQQTRTFVEAVEQ----------YSQLGLRTLCLAWREVEEDEYQ 563
GA E ++ Y G V++ + LR L LA R+ +
Sbjct: 515 GAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREE 574
Query: 564 EWSLMFKEASSTLIDREWRIAEVCQRLEHDLKVLGVTAIEDRLQDGVPETIETLRKAGIN 623
M + S+ ++ E DL +GV + D + V +I+ R AGI
Sbjct: 575 ----MVLDDSTKFME-----------YETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIR 619
Query: 624 FWMLTGDKQNTAIQIALSCNFISPEPKGQLLSIDGKTEDEVCRSLERVLLTMRITTSEPK 683
M+TGD + TAI I + + I G+ ED R+ T E
Sbjct: 620 VIMITGDNKGTAIAIC------------RRIGIFGENEDVADRAY---------TGREFD 658
Query: 684 DVAFVVDGWALEIALKHYRKAFTELAILSRTAIC-CRVTPSQKAQLVELLKSCDYRTLAI 742
D + L R+A R A C RV P+ K+++VE L+S D T
Sbjct: 659 D-----------LPLAEQREA-------CRRACCFARVEPTHKSKIVEYLQSFDEITAMT 700
Query: 743 GDGGNDVRMIQKADIGVGISGREGLQAARAADYSIGKFRFLKRLILV-HGRYSYNRTAFL 801
GDG ND ++KA+IG+ + G A A++ + F + V GR YN
Sbjct: 701 GDGVNDAPALKKAEIGIAM-GSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQF 759
Query: 802 SQY 804
+Y
Sbjct: 760 IRY 762
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 26/132 (19%)
Query: 31 NFLP----KNLWE----QFSRFMNQYFLLIACLQL---W------SLITPVNPASTWGPL 73
N LP K+LWE QF + + LL AC+ W ++ V P +
Sbjct: 39 NELPAEEGKSLWELVLEQFEDLLVRILLLAACISFVLAWFEEGEETVTAFVEPFV----I 94
Query: 74 IFIFAVSATKEAWDDYN--RYLSDKKANEKEVWVVKQGIKKLIQ---SQDIRVGNIVWLR 128
+ I +A W + N + K E E+ V + +K +Q ++DI G+IV +
Sbjct: 95 LLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVA 154
Query: 129 ENDEVPCDLVLI 140
D+VP D+ ++
Sbjct: 155 VGDKVPADIRIL 166
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 126/484 (26%), Positives = 188/484 (38%), Gaps = 101/484 (20%)
Query: 362 EDLAQVEYILTDKTGTLTENRMI----------------FRRCCIGGIFYGNETGDALKD 405
E L I +DKTGTLT N+M I G Y E G+ LK+
Sbjct: 341 ETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPE-GEVLKN 399
Query: 406 VGLLNAITSGSPD-VIRFLTVMAVCNTVIPAKSKAGAILYKAQSQDEEALVHAAAQLHMV 464
I SG D ++ T+ A+CN ++ + K E AL ++++
Sbjct: 400 D---KPIRSGQFDGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVF 456
Query: 465 LVN-KNASILEIKFNGSVLQYEILE---TLEFTSDRKRMSVVVKDCHS-----GNISLLS 515
+N S +E + + ++++ TLEF+ DRK MSV S GN +
Sbjct: 457 NTEVRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGN-KMFV 515
Query: 516 KGADEAILP---YAHAGQQTRTFVEAVEQ----------YSQLGLRTLCLAWREVEEDEY 562
KGA E ++ Y G V++ + LR L LA R+
Sbjct: 516 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 575
Query: 563 QEWSLMFKEASSTLIDREWRIAEVCQRLEHDLKVLGVTAIEDRLQDGVPETIETLRKAGI 622
+ ++D R E E DL +GV + D + V +I+ R AGI
Sbjct: 576 E-----------MVLDDSSRFME----YETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGI 620
Query: 623 NFWMLTGDKQNTAIQIALSCNFISPEPKGQLLSIDGKTEDEVCRSLERVLLTMRITTSEP 682
M+TGD + TAI I + + I G+ E+ R+ T E
Sbjct: 621 RVIMITGDNKGTAIAIC------------RRIGIFGENEEVADRAY---------TGREF 659
Query: 683 KDVAFVVDGWALEIALKHYRKAFTELAILSRTAIC-CRVTPSQKAQLVELLKSCDYRTLA 741
D + L R+A R A C RV PS K+++VE L+S D T
Sbjct: 660 DD-----------LPLAEQREA-------CRRACCFARVEPSHKSKIVEYLQSYDEITAM 701
Query: 742 IGDGGNDVRMIQKADIGVGISGREGLQAARAADYSIGKFRFLKRLILV-HGRYSYNRTAF 800
GDG ND ++KA+IG+ + G A A++ + F + V GR YN
Sbjct: 702 TGDGVNDAPALKKAEIGIAM-GSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQ 760
Query: 801 LSQY 804
+Y
Sbjct: 761 FIRY 764
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 28/152 (18%)
Query: 31 NFLP----KNLWE----QFSRFMNQYFLLIACLQL---W------SLITPVNPASTWGPL 73
N LP K+LWE QF + + LL AC+ W ++ V P +
Sbjct: 40 NELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPFV----I 95
Query: 74 IFIFAVSATKEAWDDYN--RYLSDKKANEKEVWVVKQGIKKLIQ---SQDIRVGNIVWLR 128
+ I +A W + N + K E E+ V + +K +Q ++DI G+IV +
Sbjct: 96 LLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVA 155
Query: 129 ENDEVPCDLVLIGTSDPQGVCYVETAALDGET 160
D+VP D+ ++ S V+ + L GE+
Sbjct: 156 VGDKVPADIRIL--SIKSTTLRVDQSILTGES 185
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 126/484 (26%), Positives = 188/484 (38%), Gaps = 101/484 (20%)
Query: 362 EDLAQVEYILTDKTGTLTENRMI----------------FRRCCIGGIFYGNETGDALKD 405
E L I +DKTGTLT N+M I G Y E G+ LK+
Sbjct: 340 ETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPE-GEVLKN 398
Query: 406 VGLLNAITSGSPD-VIRFLTVMAVCNTVIPAKSKAGAILYKAQSQDEEALVHAAAQLHMV 464
I SG D ++ T+ A+CN ++ + K E AL ++++
Sbjct: 399 D---KPIRSGQFDGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVF 455
Query: 465 LVN-KNASILEIKFNGSVLQYEILE---TLEFTSDRKRMSVVVKDCHS-----GNISLLS 515
+N S +E + + ++++ TLEF+ DRK MSV S GN +
Sbjct: 456 NTEVRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGN-KMFV 514
Query: 516 KGADEAILP---YAHAGQQTRTFVEAVEQ----------YSQLGLRTLCLAWREVEEDEY 562
KGA E ++ Y G V++ + LR L LA R+
Sbjct: 515 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 574
Query: 563 QEWSLMFKEASSTLIDREWRIAEVCQRLEHDLKVLGVTAIEDRLQDGVPETIETLRKAGI 622
+ ++D R E E DL +GV + D + V +I+ R AGI
Sbjct: 575 E-----------MVLDDSSRFME----YETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGI 619
Query: 623 NFWMLTGDKQNTAIQIALSCNFISPEPKGQLLSIDGKTEDEVCRSLERVLLTMRITTSEP 682
M+TGD + TAI I + + I G+ E+ R+ T E
Sbjct: 620 RVIMITGDNKGTAIAIC------------RRIGIFGENEEVADRAY---------TGREF 658
Query: 683 KDVAFVVDGWALEIALKHYRKAFTELAILSRTAIC-CRVTPSQKAQLVELLKSCDYRTLA 741
D + L R+A R A C RV PS K+++VE L+S D T
Sbjct: 659 DD-----------LPLAEQREA-------CRRACCFARVEPSHKSKIVEYLQSYDEITAM 700
Query: 742 IGDGGNDVRMIQKADIGVGISGREGLQAARAADYSIGKFRFLKRLILV-HGRYSYNRTAF 800
GDG ND ++KA+IG+ + G A A++ + F + V GR YN
Sbjct: 701 TGDGVNDAPALKKAEIGIAM-GSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQ 759
Query: 801 LSQY 804
+Y
Sbjct: 760 FIRY 763
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 28/152 (18%)
Query: 31 NFLP----KNLWE----QFSRFMNQYFLLIACLQL---W------SLITPVNPASTWGPL 73
N LP K+LWE QF + + LL AC+ W ++ V P +
Sbjct: 39 NELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPFV----I 94
Query: 74 IFIFAVSATKEAWDDYN--RYLSDKKANEKEVWVVKQGIKKLIQ---SQDIRVGNIVWLR 128
+ I +A W + N + K E E+ V + +K +Q ++DI G+IV +
Sbjct: 95 LLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVA 154
Query: 129 ENDEVPCDLVLIGTSDPQGVCYVETAALDGET 160
D+VP D+ ++ S V+ + L GE+
Sbjct: 155 VGDKVPADIRIL--SIKSTTLRVDQSILTGES 184
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 125/484 (25%), Positives = 187/484 (38%), Gaps = 101/484 (20%)
Query: 362 EDLAQVEYILTDKTGTLTENRMI----------------FRRCCIGGIFYGNETGDALKD 405
E L I + KTGTLT N+M I G Y E G+ LK+
Sbjct: 340 ETLGCTSVICSXKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPE-GEVLKN 398
Query: 406 VGLLNAITSGSPD-VIRFLTVMAVCNTVIPAKSKAGAILYKAQSQDEEALVHAAAQLHMV 464
I SG D ++ T+ A+CN ++ + K E AL ++++
Sbjct: 399 D---KPIRSGQFDGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVF 455
Query: 465 LVN-KNASILEIKFNGSVLQYEILE---TLEFTSDRKRMSVVVKDCHS-----GNISLLS 515
+N S +E + + ++++ TLEF+ DRK MSV S GN +
Sbjct: 456 NTEVRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGN-KMFV 514
Query: 516 KGADEAILP---YAHAGQQTRTFVEAVEQ----------YSQLGLRTLCLAWREVEEDEY 562
KGA E ++ Y G V++ + LR L LA R+
Sbjct: 515 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 574
Query: 563 QEWSLMFKEASSTLIDREWRIAEVCQRLEHDLKVLGVTAIEDRLQDGVPETIETLRKAGI 622
+ ++D R E E DL +GV + D + V +I+ R AGI
Sbjct: 575 E-----------MVLDDSSRFME----YETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGI 619
Query: 623 NFWMLTGDKQNTAIQIALSCNFISPEPKGQLLSIDGKTEDEVCRSLERVLLTMRITTSEP 682
M+TGD + TAI I + + I G+ E+ R+ T E
Sbjct: 620 RVIMITGDNKGTAIAIC------------RRIGIFGENEEVADRAY---------TGREF 658
Query: 683 KDVAFVVDGWALEIALKHYRKAFTELAILSRTAIC-CRVTPSQKAQLVELLKSCDYRTLA 741
D + L R+A R A C RV PS K+++VE L+S D T
Sbjct: 659 DD-----------LPLAEQREA-------CRRACCFARVEPSHKSKIVEYLQSYDEITAM 700
Query: 742 IGDGGNDVRMIQKADIGVGISGREGLQAARAADYSIGKFRFLKRLILV-HGRYSYNRTAF 800
GDG ND ++KA+IG+ + G A A++ + F + V GR YN
Sbjct: 701 TGDGVNDAPALKKAEIGIAM-GSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQ 759
Query: 801 LSQY 804
+Y
Sbjct: 760 FIRY 763
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 28/152 (18%)
Query: 31 NFLP----KNLWE----QFSRFMNQYFLLIACLQL---W------SLITPVNPASTWGPL 73
N LP K+LWE QF + + LL AC+ W ++ V P +
Sbjct: 39 NELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPFV----I 94
Query: 74 IFIFAVSATKEAWDDYN--RYLSDKKANEKEVWVVKQGIKKLIQ---SQDIRVGNIVWLR 128
+ I +A W + N + K E E+ V + +K +Q ++DI G+IV +
Sbjct: 95 LLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVA 154
Query: 129 ENDEVPCDLVLIGTSDPQGVCYVETAALDGET 160
D+VP D+ ++ S V+ + L GE+
Sbjct: 155 VGDKVPADIRIL--SIKSTTLRVDQSILTGES 184
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 171/432 (39%), Gaps = 58/432 (13%)
Query: 357 NTAISEDLAQVEYILTDKTGTLTENRMIFRRCCIGGIFYGNETGDALKDVGLLNAITSGS 416
N E L I +DKTGTLT+NRM + +++ N+ +A A +
Sbjct: 365 NLEAVETLGSTSTICSDKTGTLTQNRMT-----VAHMWFDNQIHEADTTENQSGAAFDKT 419
Query: 417 PDVIRFLT-VMAVCN-TVIPAKSKAGAILYKAQSQD--EEAL---VHAAAQLHMVLVNKN 469
L+ + A+CN V A IL ++ + D E AL + + ++N
Sbjct: 420 SATWSALSRIAALCNRAVFQAGQDNVPILKRSVAGDASESALLKCIELCCGSVQGMRDRN 479
Query: 470 ASILEIKFNGSVLQYEILETLEFTSDRKRMSVVVKDCHSGNI----SLLSKGADEAILPY 525
I+EI FN S +Y++ S R +V+K + ++L GA+E +
Sbjct: 480 PKIVEIPFN-STNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAEEPL--- 535
Query: 526 AHAGQQTRTFVEAVEQYSQLGLRTLCLAWREVEEDEYQEWSLMFKEASSTLIDREWRIAE 585
F A + LG R L + ED+Y E F A+
Sbjct: 536 --KEDMKEAFQNAYLELGGLGERVLGFCHFALPEDKYNE-GYPFD-------------AD 579
Query: 586 VCQRLEHDLKVLGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQIALSCNFI 645
DL +G+ A+ D + VP+ + R AGI M+TGD TA IA I
Sbjct: 580 EPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGII 639
Query: 646 SPEPKGQLLSIDGKTEDEVCRSLERVLLTMRITTSEPKDV-AFVVDGWALEIALKHYRKA 704
S + ED R L + I P+D A VV G L+ +
Sbjct: 640 SEG--------NETIEDIAAR------LNIPIGQVNPRDAKACVVHGSDLK---DLSTEV 682
Query: 705 FTELAILSRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQKADIGV--GIS 762
++ + R +P QK +VE + GDG ND ++KADIGV GIS
Sbjct: 683 LDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIS 742
Query: 763 GREGLQAARAAD 774
G + + +AAD
Sbjct: 743 GSD--VSKQAAD 752
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 162/709 (22%), Positives = 267/709 (37%), Gaps = 163/709 (22%)
Query: 101 KEVWVVKQGIKKLIQSQDIRVGNIVWLRENDEVPCDLVLIGTSDPQGVCYVETAALDGET 160
++ V++ G K I ++++ VG++V ++ D +P DL +I + C V+ ++L GE+
Sbjct: 142 QQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANG----CKVDNSSLTGES 197
Query: 161 DLKTRLIPAACMGMDFELLHKIKGVIECPGPDKDIRRFDGNLRLLPPFIDNDVCPLTIKN 220
+ +TR DF E P ++I F N ++
Sbjct: 198 EPQTR-------SPDF--------TNENPLETRNIAFFSTN---------------CVEG 227
Query: 221 TILQSCYLRNTEWACGVAVYTGNETKLGMT-------RGIPEPKLTAVDAMIDKLTGAXX 273
T A G+ VYTG+ T +G G P ++ I +TG
Sbjct: 228 T------------ARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAV 275
Query: 274 XXXXXXXXXLGTAGNVWKDTEARKEFPWYELLVIPLRFELLCSIMI---PISIKVSLDLV 330
LG + + E+ W E ++ L I++ P + ++ +
Sbjct: 276 F--------LGVSFFILS---LILEYTWLEAVI------FLIGIIVANVPEGLLATVTVC 318
Query: 331 KSLYAKFIDWDYEMIDPETDTPSHATNTAISEDLAQVEYILTDKTGTLTENRMIFRRCCI 390
+L AK + ++ N E L I +DKTGTLT+NRM
Sbjct: 319 LTLTAKRMARKNCLVK----------NLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWS 368
Query: 391 GGIFYGNETGDALKDVGLLNAITSGSPDVIRFLTVMAVCN-TVIPAKSKAGAILYKAQSQ 449
+ +T + V + S + + +CN V A + IL +A +
Sbjct: 369 DNQIHEADTTENQSGV----SFDKTSATWLALSRIAGLCNRAVFQANQENLPILKRAVAG 424
Query: 450 D--EEAL---VHAAAQLHMVLVNKNASILEIKFNGSVLQYEI-LETLEFTSDRKRMSVVV 503
D E AL + + + I+EI FN S +Y++ + T++ + +
Sbjct: 425 DASESALLKCIELCCGSVKEMRERYTKIVEIPFN-STNKYQLSIHKNPNTAEPRHL---- 479
Query: 504 KDCHSGNISLLSKGADEAILPYA-----HAGQQ------TRTFVEAVEQYSQLGLRTLCL 552
L+ KGA E IL H +Q F A + LG R L
Sbjct: 480 ---------LVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAYLELGGLGERVLGF 530
Query: 553 AWREVEEDEYQEWSLMFKEASSTLIDREWRIAEVCQRLEHDLKVLGVTAIEDRLQDGVPE 612
+ ++++ E F D + + +C +G+ ++ D + VP+
Sbjct: 531 CHLFLPDEQFPE-GFQFDTD-----DVNFPLDNLC--------FVGLISMIDPPRAAVPD 576
Query: 613 TIETLRKAGINFWMLTGDKQNTAIQIALSCNFISPEPKGQLLSIDGKTEDEVCRSLERVL 672
+ R AGI M+TGD TA IA IS + ED R
Sbjct: 577 AVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEG--------NETVEDIAAR------ 622
Query: 673 LTMRITTSEPKDV-AFVVDGWALEI----ALKHYRKAFTELAILSRTAICCRVTPSQKAQ 727
L + ++ P+D A VV G L+ L K TE+ + R +P QK
Sbjct: 623 LNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEI-------VFARTSPQQKLI 675
Query: 728 LVELLKSCDYRTLAIGDGGNDVRMIQKADIGV--GISGREGLQAARAAD 774
+VE + GDG ND +KADIGV GI+G + + +AAD
Sbjct: 676 IVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSD--VSKQAAD 722
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 163/716 (22%), Positives = 268/716 (37%), Gaps = 163/716 (22%)
Query: 94 SDKKANEKEVWVVKQGIKKLIQSQDIRVGNIVWLRENDEVPCDLVLIGTSDPQGVCYVET 153
S K ++ V++ G K I ++++ VG++V ++ D +P DL +I + C V+
Sbjct: 129 SFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANG----CKVDN 184
Query: 154 AALDGETDLKTRLIPAACMGMDFELLHKIKGVIECPGPDKDIRRFDGNLRLLPPFIDNDV 213
++L GE++ +TR DF E P ++I F N
Sbjct: 185 SSLTGESEPQTR-------SPDF--------TNENPLETRNIAFFSTN------------ 217
Query: 214 CPLTIKNTILQSCYLRNTEWACGVAVYTGNETKLGMT-------RGIPEPKLTAVDAMID 266
++ T A G+ VYTG+ T +G G P ++ I
Sbjct: 218 ---CVEGT------------ARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIH 262
Query: 267 KLTGAXXXXXXXXXXXLGTAGNVWKDTEARKEFPWYELLVIPLRFELLCSIMI---PISI 323
+TG LG + + E+ W E ++ L I++ P +
Sbjct: 263 IITGVAVF--------LGVSFFILS---LILEYTWLEAVI------FLIGIIVANVPEGL 305
Query: 324 KVSLDLVKSLYAKFIDWDYEMIDPETDTPSHATNTAISEDLAQVEYILTDKTGTLTENRM 383
++ + +L AK + ++ N E L I + KTGTLT+NRM
Sbjct: 306 LATVTVCLTLTAKRMARKNCLVK----------NLEAVETLGSTSTICSXKTGTLTQNRM 355
Query: 384 IFRRCCIGGIFYGNETGDALKDVGLLNAITSGSPDVIRFLTVMAVCN-TVIPAKSKAGAI 442
+ +T + V + S + + +CN V A + I
Sbjct: 356 TVAHMWSDNQIHEADTTENQSGV----SFDKTSATWLALSRIAGLCNRAVFQANQENLPI 411
Query: 443 LYKAQSQD--EEAL---VHAAAQLHMVLVNKNASILEIKFNGSVLQYEI-LETLEFTSDR 496
L +A + D E AL + + + I+EI FN S +Y++ + T++
Sbjct: 412 LKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIPFN-STNKYQLSIHKNPNTAEP 470
Query: 497 KRMSVVVKDCHSGNISLLSKGADEAILPYA-----HAGQQ------TRTFVEAVEQYSQL 545
+ + L+ KGA E IL H +Q F A + L
Sbjct: 471 RHL-------------LVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAYLELGGL 517
Query: 546 GLRTLCLAWREVEEDEYQEWSLMFKEASSTLIDREWRIAEVCQRLEHDLKVLGVTAIEDR 605
G R L + ++++ E F D + + +C +G+ ++ D
Sbjct: 518 GERVLGFCHLFLPDEQFPE-GFQFDTD-----DVNFPLDNLC--------FVGLISMIDP 563
Query: 606 LQDGVPETIETLRKAGINFWMLTGDKQNTAIQIALSCNFISPEPKGQLLSIDGKTEDEVC 665
+ VP+ + R AGI M+TGD TA IA IS + ED
Sbjct: 564 PRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEG--------NETVEDIAA 615
Query: 666 RSLERVLLTMRITTSEPKDV-AFVVDGWALEI----ALKHYRKAFTELAILSRTAICCRV 720
R L + ++ P+D A VV G L+ L K TE+ + R
Sbjct: 616 R------LNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEI-------VFART 662
Query: 721 TPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQKADIGV--GISGREGLQAARAAD 774
+P QK +VE + GDG ND +KADIGV GI+G + + +AAD
Sbjct: 663 SPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSD--VSKQAAD 716
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 113/444 (25%), Positives = 164/444 (36%), Gaps = 82/444 (18%)
Query: 357 NTAISEDLAQVEYILTDKTGTLTENRMIFRRCCIGGIFYGNETGDALKDVGLLNAITSGS 416
N E L I +DKTGTLT+NRM + +++ N A S
Sbjct: 370 NLEAVETLGSTSVICSDKTGTLTQNRMT-----VSHLWFDNHIHSADTTEDQSGQTFDQS 424
Query: 417 PDVIRFLT-VMAVCNTV----------IPAKSKAGAILYKAQSQDEEALVHAAAQLHMVL 465
+ R L V+ +CN +P + G A + E + A M
Sbjct: 425 SETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNA----MGY 480
Query: 466 VNKNASILEIKFNGSVLQYEILETLEFTSDRKRMSV-------VVKDCHSGNISLLSKGA 518
+ + EI FN + + TLE D + + V V++ C S +L KG
Sbjct: 481 RERFPKVCEIPFNSTNKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSS----ILIKGQ 536
Query: 519 DEAILPYAHAGQQTRTFVEAVEQYSQLGLRTLCLAWREVEEDEYQEWSLMFKEASSTLID 578
+ LP Q F A LG R L + E +Y EA +
Sbjct: 537 E---LPLDE--QWREAFQTAYLSLGGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTS 591
Query: 579 REWRIAEVCQRLEHDLKVLGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQI 638
L G+ ++ D + VP+ + R AGI M+TGD TA I
Sbjct: 592 --------------GLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAI 637
Query: 639 ALSCNFISPEPKGQLLSIDGKTEDEVCRSLERVLLTMRITTSE--PKDV-AFVVDGWALE 695
A S IS E ++E + +R+ + KD A V++G L+
Sbjct: 638 AASVGIIS----------------EGSETVEDIAARLRVPVDQVNRKDARACVINGMQLK 681
Query: 696 IALKHYRKAFTELAILSRT---AICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMI 752
+EL RT + R +P QK +VE + GDG ND +
Sbjct: 682 ------DMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPAL 735
Query: 753 QKADIGV--GISGREGLQAARAAD 774
+KADIGV GI+G + A AAD
Sbjct: 736 KKADIGVAMGIAGSDA--AKNAAD 757
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 84 EAWDDYNRYLSDKKANEKEVWVVKQGIKKLIQSQDIRVGNIVWLRENDEVPCDLVLIGTS 143
+ + N S K ++ V++ G K I + + VG++V ++ D VP D+ ++
Sbjct: 160 QEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQ 219
Query: 144 DPQGVCYVETAALDGETDLKTR 165
+ V+ ++L GE++ +TR
Sbjct: 220 GRK----VDNSSLTGESEPQTR 237
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 101/423 (23%), Positives = 160/423 (37%), Gaps = 129/423 (30%)
Query: 358 TAISEDLAQVEYILTDKTGTLTENRMIFRRCCIGGIFYGNETGDALKDVGLLNAITSGSP 417
TAI E++A ++ + +DKTGTLT N++ + + G E KD LL A
Sbjct: 315 TAI-EEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVE-----KDQVLLFA------ 362
Query: 418 DVIRFLTVMAVCNTVIPAKSKAGAILYKAQSQDEEALVHAAAQLHMVLVNKNA--SILEI 475
A+ + ++QD AA + M+ K A I E+
Sbjct: 363 -----------------------AMASRVENQD----AIDAAMVGMLADPKEARAGIREV 395
Query: 476 KFNGSVLQYEILETLEFTSDRKRMSVVVKDCHSGNISLLSKGADEAILPYAHAGQQ-TRT 534
F L F KR ++ D SGN +SKGA E IL A A ++
Sbjct: 396 HF------------LPFNPVDKRTALTYIDG-SGNWHRVSKGAPEQILELAKASNDLSKK 442
Query: 535 FVEAVEQYSQLGLRTLCLAWREVEEDEYQEWSLMFKEASSTLIDREWRIAEVCQRLEHDL 594
+ +++Y++ GLR+L +A + V E KE+ W
Sbjct: 443 VLSIIDKYAERGLRSLAVARQVVPEKT--------KESPGA----PW------------- 477
Query: 595 KVLGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDK----QNTAIQIALSCNFISPEPK 650
+ +G+ + D + ETI G+N M+TGD+ + T ++ + N P
Sbjct: 478 EFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMY---PS 534
Query: 651 GQLLSIDGKTEDEVCRSLERVLLTMRITTSEPKDVAFVVDGWALEIALKHYRKAFTELAI 710
LL G +D S+ L + DG+A
Sbjct: 535 SALL---GTHKDANLASIPVEELIEK------------ADGFA----------------- 562
Query: 711 LSRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQKADIGVGISGREGLQAA 770
V P K ++V+ L+ + GDG ND ++KADIG+ ++ + AA
Sbjct: 563 --------GVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIAVA--DATDAA 612
Query: 771 RAA 773
R A
Sbjct: 613 RGA 615
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 84/226 (37%), Gaps = 53/226 (23%)
Query: 555 REVEEDEY--QEWSLMFKEASSTLIDREWRIAEVC-QRLEHDLKVLGVTAIEDRLQDGVP 611
+ VEED +E +K + R +R V +R E ++LG+ D +
Sbjct: 482 KTVEEDHPIPEEVDQAYKNKVAEFATRGFRSLGVARKRGEGSWEILGIMPCMDPPRHDTY 541
Query: 612 ETIETLRKAGINFWMLTGDK----QNTAIQIALSCNFISPEPKGQLLSIDGKTEDEVCRS 667
+T+ + G++ MLTGD + T+ Q+ L N + E G D
Sbjct: 542 KTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGD---------- 591
Query: 668 LERVLLTMRITTSEPKDVAFVVDGWALEIALKHYRKAFTELAILSRTAICCRVTPSQKAQ 727
+ SE D DG+A V P K
Sbjct: 592 ---------MPGSEVYDFVEAADGFA-------------------------EVFPQHKYN 617
Query: 728 LVELLKSCDYRTLAIGDGGNDVRMIQKADIGVGISGREGLQAARAA 773
+VE+L+ Y GDG ND ++KAD G+ + G AAR+A
Sbjct: 618 VVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEGSS--DAARSA 661
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 362 EDLAQVEYILTDKTGTLTENRM 383
E LA VE + +DKTGTLT+N++
Sbjct: 367 ESLAGVEILCSDKTGTLTKNKL 388
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 593 DLKVLGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQIALSCNF------IS 646
D K + + +ED ++ PETI L+++GI MLTGD + TA +A + I
Sbjct: 542 DGKTVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIKKVVAEIM 601
Query: 647 PEPKGQLLS 655
PE K +++S
Sbjct: 602 PEDKSRIVS 610
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 702 RKAFTELAILSRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQKADIGVGI 761
R A L + + P K+++V LK GDG ND + KADIG+ +
Sbjct: 582 RTAEAVAGTLGIKKVVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKADIGIAM 641
Query: 762 S 762
Sbjct: 642 G 642
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 577 IDREWRIAEVCQRLEHDLKVLGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAI 636
++RE + A + R + +V G+ A+ D L++ ++ L++ GI M+TGD +A
Sbjct: 432 LEREAKTAVIVAR---NGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAE 488
Query: 637 QIALSCNF 644
I+ N
Sbjct: 489 AISRELNL 496
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 101 KEVWVVKQGIKKLIQSQDIRVGNIVWLRENDEVPCDLVLIGTSDPQGVCYVETAALDGE 159
K V++ G + + +++ VG+IV +R +++P D V++ +G YV+ + + GE
Sbjct: 133 KTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVV-----EGESYVDESMISGE 186
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 93/197 (47%), Gaps = 18/197 (9%)
Query: 578 DREW-RIAEVCQRL-EHDL-KVLGVTAIEDRLQDGVPETIETLRKAGINF-WMLTGDKQ- 632
+RE R+A + +R EH + + + A+E ++ G PE +E + G+ +L G+K+
Sbjct: 354 ERELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVADGILVGNKRL 413
Query: 633 ----NTAI--QIALSCNFISPEPK-GQLLSIDGKTEDEVCRSLERVLLTMRITTSEPKDV 685
A+ ++ L+ + E K +++ +G+ E + S + + + + E K +
Sbjct: 414 MEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVS-DTLKESAKPAVQELKRM 472
Query: 686 AFVVDGWALEIALKHYRKAFTELAILSRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDG 745
V I ++R A L+ + V P QK++ V+ L++ + +GDG
Sbjct: 473 GIKVG----MITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAKEVVAF-VGDG 527
Query: 746 GNDVRMIQKADIGVGIS 762
ND + +AD+G+ +
Sbjct: 528 INDAPALAQADLGIAVG 544
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 577 IDREWRIAEVCQRLEHDLKVLGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAI 636
++RE + A + R + +V G+ A+ D L++ ++ L++ GI M+TGD +A
Sbjct: 510 LEREAKTAVIVAR---NGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAE 566
Query: 637 QIALSCNF 644
I+ N
Sbjct: 567 AISRELNL 574
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 101 KEVWVVKQGIKKLIQSQDIRVGNIVWLRENDEVPCDLVLIGTSDPQGVCYVETAALDGE 159
K V++ G + + +++ VG+IV +R +++P D V++ +G YV+ + + GE
Sbjct: 211 KTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVV-----EGESYVDESMISGE 264
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 93/197 (47%), Gaps = 18/197 (9%)
Query: 578 DREW-RIAEVCQRL-EHDL-KVLGVTAIEDRLQDGVPETIETLRKAGINF-WMLTGDKQ- 632
+RE R+A + +R EH + + + A+E ++ G PE +E + G+ +L G+K+
Sbjct: 432 ERELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVADGILVGNKRL 491
Query: 633 ----NTAI--QIALSCNFISPEPK-GQLLSIDGKTEDEVCRSLERVLLTMRITTSEPKDV 685
A+ ++ L+ + E K +++ +G+ E + S + + + + E K +
Sbjct: 492 MEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVS-DTLKESAKPAVQELKRM 550
Query: 686 AFVVDGWALEIALKHYRKAFTELAILSRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDG 745
V I ++R A L+ + V P QK++ V+ L++ + +GDG
Sbjct: 551 GIKVG----MITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAKEVVAF-VGDG 605
Query: 746 GNDVRMIQKADIGVGIS 762
ND + +AD+G+ +
Sbjct: 606 INDAPALAQADLGIAVG 622
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 36.6 bits (83), Expect = 0.075, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 577 IDREWRIAEVCQRLEHDLKVLGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAI 636
++RE + A + R + +V G+ A+ D L++ ++ L++ GI M+TGD +A
Sbjct: 138 LEREAKTAVIVAR---NGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAE 194
Query: 637 QIALSCNF 644
I+ N
Sbjct: 195 AISRELNL 202
Score = 30.0 bits (66), Expect = 8.0, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 716 ICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQKADIGVGI 761
+ V P QK++ V+ L++ + +GDG ND + +AD+G+ +
Sbjct: 205 VIAEVLPHQKSEEVKKLQAKEVVAF-VGDGINDAPALAQADLGIAV 249
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 36.6 bits (83), Expect = 0.075, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 577 IDREWRIAEVCQRLEHDLKVLGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAI 636
++RE + A + R + +V G+ A+ D L++ ++ L++ GI M+TGD +A
Sbjct: 138 LEREAKTAVIVAR---NGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAE 194
Query: 637 QIALSCNF 644
I+ N
Sbjct: 195 AISRELNL 202
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 42/191 (21%), Positives = 89/191 (46%), Gaps = 17/191 (8%)
Query: 582 RIAEVCQRL-EHDL-KVLGVTAIEDRLQDGVPETIETLRKAGI-NFWMLTGDKQ------ 632
R+A + +R EH + + + A+E ++ G PE +E + G+ +L G+K+
Sbjct: 65 RLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVADGILVGNKRLMEDFG 124
Query: 633 -NTAIQIALSCNFISPEPK-GQLLSIDGKTEDEVCRSLERVLLTMRITTSEPKDVAFVVD 690
+ ++ L+ + E K +++ +G+ E + S + + + + E K + V
Sbjct: 125 VAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVS-DTLKESAKPAVQELKRMGIKVG 183
Query: 691 GWALEIALKHYRKAFTELAILSRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVR 750
I ++R A L+ + V P QK++ V+ L++ + +GDG ND
Sbjct: 184 ----MITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAKEVVAF-VGDGINDAP 238
Query: 751 MIQKADIGVGI 761
+ +AD+G+ +
Sbjct: 239 ALAQADLGIAV 249
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 738 RTLAIGDGGNDVRMIQKADIGVGIS-GREGLQAARAADY 775
T++ GDGGND+ M++ A IGV + +E ++A AADY
Sbjct: 205 ETMSFGDGGNDISMLRHAAIGVAMGQAKEDVKA--AADY 241
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 738 RTLAIGDGGNDVRMIQKADIGVGIS-GREGLQAARAADY 775
T++ GDGGND+ M++ A IGV + +E ++A AADY
Sbjct: 205 ETMSFGDGGNDISMLRHAAIGVAMGQAKEDVKA--AADY 241
>pdb|3PJQ|A Chain A, Trypanosoma Cruzi Trans-Sialidase-Like Inactive Isoform
(Including The Natural Mutation Tyr342his) In Complex
With Lactose
Length = 648
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 30/108 (27%)
Query: 16 LYCANRL-SNRKYTLMNFLPKNLWEQFSRFMNQYFLLIACLQLW--------SLITPVNP 66
LYC + + SN Y+L+ F+R + + ++ + LQ W S+ TP +P
Sbjct: 366 LYCLHEINSNEVYSLV----------FARLVGELRIIKSVLQSWKNWDSHLSSICTPADP 415
Query: 67 ASTW-----GP------LIFIFAVSATKEAWDDYNRYLSDKKANEKEV 103
A++ GP L+ + SATK W+D R ++ AN + V
Sbjct: 416 AASSSERGCGPAVTTVGLVGFLSHSATKTEWEDAYRCVNASTANAERV 463
>pdb|1MR5|A Chain A, Orthorhombic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS0|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)and Lactose
pdb|1MS0|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)and Lactose
pdb|1MS1|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-sialidase, In
Complex With 3-deoxy-2,3-dehydro-n-acetylneuraminic Acid
(dana)
pdb|1MS1|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-sialidase, In
Complex With 3-deoxy-2,3-dehydro-n-acetylneuraminic Acid
(dana)
pdb|1MS3|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS3|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS4|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS4|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS8|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)
pdb|1MS8|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)
pdb|1MS9|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With Lactose
pdb|1MS9|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With Lactose
pdb|2AH2|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With
2,3-Difluorosialic Acid (Covalent Intermediate)
pdb|3B69|A Chain A, T Cruzi Trans-Sialidase Complex With Benzoylated Nana
Derivative
pdb|3OPZ|A Chain A, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|B Chain B, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|C Chain C, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
Length = 648
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 30/108 (27%)
Query: 16 LYCANRL-SNRKYTLMNFLPKNLWEQFSRFMNQYFLLIACLQLW--------SLITPVNP 66
LYC + + SN Y+L+ F+R + + ++ + LQ W S+ TP +P
Sbjct: 366 LYCLHEINSNEVYSLV----------FARLVGELRIIKSVLQSWKNWDSHLSSICTPADP 415
Query: 67 ASTW-----GP------LIFIFAVSATKEAWDDYNRYLSDKKANEKEV 103
A++ GP L+ + SATK W+D R ++ AN + V
Sbjct: 416 AASSSERGCGPAVTTVGLVGFLSHSATKTEWEDAYRCVNASTANAERV 463
>pdb|1S0I|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With Sialyl-
Lactose (Michaelis Complex)
pdb|1S0J|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With Munana
(Michaelis Complex)
Length = 648
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 30/108 (27%)
Query: 16 LYCANRL-SNRKYTLMNFLPKNLWEQFSRFMNQYFLLIACLQLW--------SLITPVNP 66
LYC + + SN Y+L+ F+R + + ++ + LQ W S+ TP +P
Sbjct: 366 LYCLHEINSNEVYSLV----------FARLVGELRIIKSVLQSWKNWDSHLSSICTPADP 415
Query: 67 ASTW-----GP------LIFIFAVSATKEAWDDYNRYLSDKKANEKEV 103
A++ GP L+ + SATK W+D R ++ AN + V
Sbjct: 416 AASSSERGCGPAVTTVGLVGFLSHSATKTEWEDAYRCVNASTANAERV 463
>pdb|1MS5|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase,
Soaked With N-Acetylneuraminyl-A-2,3-Thio-Galactoside
(Na-S-Gal)
pdb|1MS5|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase,
Soaked With N-Acetylneuraminyl-A-2,3-Thio-Galactoside
(Na-S-Gal)
Length = 648
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 30/108 (27%)
Query: 16 LYCANRL-SNRKYTLMNFLPKNLWEQFSRFMNQYFLLIACLQLW--------SLITPVNP 66
LYC + + SN Y+L+ F+R + + ++ + LQ W S+ TP +P
Sbjct: 366 LYCLHEINSNEVYSLV----------FARLVGELRIIKSVLQSWKNWDSHLSSICTPADP 415
Query: 67 ASTW-----GP------LIFIFAVSATKEAWDDYNRYLSDKKANEKEV 103
A++ GP L+ + SATK W+D R ++ AN + V
Sbjct: 416 AASSSERGCGPAVTTVGLVGFLSHSATKTEWEDAYRCVNASTANAERV 463
>pdb|3M1Y|A Chain A, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|B Chain B, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|C Chain C, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|D Chain D, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
Length = 217
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 16/126 (12%)
Query: 659 KTEDEVCRSLERVLLTMRITTS-EPKDVAFVVDGWALEIALKHYRK------AFTELAIL 711
K EVC SL + + ++ + K+ V ++A HYR AF+ I+
Sbjct: 65 KLAKEVCESLPLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFSNTLIV 124
Query: 712 SRTAICCRVT-----PSQKAQ----LVELLKSCDYRTLAIGDGGNDVRMIQKADIGVGIS 762
A+ VT K + L LL TL +GDG ND+ + A I + +
Sbjct: 125 ENDALNGLVTGHXXFSHSKGEXLLVLQRLLNISKTNTLVVGDGANDLSXFKHAHIKIAFN 184
Query: 763 GREGLQ 768
+E L+
Sbjct: 185 AKEVLK 190
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 33.1 bits (74), Expect = 0.84, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 720 VTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQKADIGVGI 761
V P +KA+ V+ ++ Y T +GDG ND + +AD+G+ I
Sbjct: 190 VLPHEKAEKVKEVQQ-KYVTAMVGDGVNDAPALAQADVGIAI 230
Score = 33.1 bits (74), Expect = 0.85, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 595 KVLGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQIA 639
+V GV A+ DR++ E I L+ GI MLTGD + A +A
Sbjct: 134 EVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVA 178
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 718 CRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQKADIGVGIS 762
V P +KA+ V+ ++ Y T +GDG ND + +AD+G+ I
Sbjct: 188 AEVLPHEKAEKVKEVQQ-KYVTAMVGDGVNDAPALAQADVGIAIG 231
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 595 KVLGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQIA 639
+V GV A+ DR++ E I L+ GI MLTGD + A +A
Sbjct: 134 EVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVA 178
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 101 KEVWVVKQGIKKLIQSQDIRVGNIVWLRENDEVPCDLVLIGTSDPQGVCYVETAALDGE 159
K V++ G + + +++ VG+IV +R +++P D V++ +G YV+ + + GE
Sbjct: 12 KTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVV-----EGESYVDESMISGE 65
>pdb|3GYG|A Chain A, Crystal Structure Of Yhjk (Haloacid Dehalogenase-Like
Hydrolase Protein) From Bacillus Subtilis
pdb|3GYG|B Chain B, Crystal Structure Of Yhjk (Haloacid Dehalogenase-Like
Hydrolase Protein) From Bacillus Subtilis
pdb|3GYG|C Chain C, Crystal Structure Of Yhjk (Haloacid Dehalogenase-Like
Hydrolase Protein) From Bacillus Subtilis
pdb|3GYG|D Chain D, Crystal Structure Of Yhjk (Haloacid Dehalogenase-Like
Hydrolase Protein) From Bacillus Subtilis
Length = 289
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 738 RTLAIGDGGNDVRMIQKADIGVGISGREGLQAARA-------ADYSIGKFRFLKRLI 787
R +A GD GNDVR +Q +G G + Q A+ ++YS G LK+LI
Sbjct: 229 RAIAFGDSGNDVRXLQT--VGNGYLLKNATQEAKNLHNLITDSEYSKGITNTLKKLI 283
>pdb|4B6J|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
Length = 201
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 740 LAIGDGGNDVRMIQKADIGVGISGRE 765
LA+GDG D +M ++AD+G+ + GRE
Sbjct: 154 LAMGDGYADAKMFERADMGIAV-GRE 178
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 728 LVELLKSCDYRTLAIGDGGNDVRMIQKADIGVGISGREGLQAARAADY 775
L+E + +AIGDG ND+ MI+ A +GV + G +AADY
Sbjct: 205 LLENIGMTREEVIAIGDGYNDLSMIKFAGMGVAM-GNAQEPVKKAADY 251
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 740 LAIGDGGNDVRMIQKADIGVGISGREGLQAARAADY 775
+A GDGGND+ M++ A IGV + G + AD+
Sbjct: 214 MACGDGGNDIPMLKAAGIGVAM-GNASEKVQSVADF 248
>pdb|3N28|A Chain A, Crystal Structure Of Probable Phosphoserine Phosphatase
From Vibrio Cholerae, Unliganded Form
Length = 335
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 737 YRTLAIGDGGNDVRMIQKADIGVGISGREGLQA 769
+ T+A+GDG ND+ M+ A +GV + ++A
Sbjct: 262 HNTVAVGDGANDLVMMAAAGLGVAYHAKPKVEA 294
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 738 RTLAIGDGGNDVRMIQKADIGVGISGREGLQAARAADYSI 777
+T+A+GDG ND+ M+ A +G+ + + L+ AD S+
Sbjct: 341 QTVAVGDGANDIDMLAAAGLGIAFNAKPALR--EVADASL 378
>pdb|2ZKR|YY Chain y, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 135
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 420 IRFLTVMAVCNTVIPAKSKAGAILYKAQSQDEEALVHAAAQLHMVLVNKNASI 472
++ L V+ +CN KS I + S++ +A+V AAQL + + N NA +
Sbjct: 82 VKELEVLLMCN-----KSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARL 129
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 30.4 bits (67), Expect = 5.2, Method: Composition-based stats.
Identities = 42/191 (21%), Positives = 88/191 (46%), Gaps = 17/191 (8%)
Query: 582 RIAEVCQRL-EHDL-KVLGVTAIEDRLQDGVPETIETLRKAGI-NFWMLTGDKQ------ 632
R+A + +R EH + + + A+E ++ G PE +E + G+ +L G+K+
Sbjct: 45 RLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVADGILVGNKRLXEDFG 104
Query: 633 -NTAIQIALSCNFISPEPK-GQLLSIDGKTEDEVCRSLERVLLTMRITTSEPKDVAFVVD 690
+ ++ L+ + E K +++ +G+ E + S + + + + E K V
Sbjct: 105 VAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVS-DTLKESAKPAVQELKRXGIKVG 163
Query: 691 GWALEIALKHYRKAFTELAILSRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVR 750
I ++R A L+ + V P QK++ V+ L++ + +GDG ND
Sbjct: 164 ----XITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAKEVVAF-VGDGINDAP 218
Query: 751 MIQKADIGVGI 761
+ +AD+G+ +
Sbjct: 219 ALAQADLGIAV 229
>pdb|1RKU|A Chain A, Crystal Structure Of Thrh Gene Product Of Pseudomonas
Aeruginosa
pdb|1RKU|B Chain B, Crystal Structure Of Thrh Gene Product Of Pseudomonas
Aeruginosa
pdb|1RKV|A Chain A, Structure Of Phosphate Complex Of Thrh From Pseudomonas
Aeruginosa
pdb|1RKV|B Chain B, Structure Of Phosphate Complex Of Thrh From Pseudomonas
Aeruginosa
Length = 206
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 725 KAQLVELLKSCDYRTLAIGDGGNDVRMIQKADIGVGISG-----REGLQAARAADYSIGK 779
K Q V KS YR +A GD ND M+ +A G+ RE Q Y K
Sbjct: 134 KRQSVIAFKSLYYRVIAAGDSYNDTTMLSEAHAGILFHAPENVIREFPQFPAVHTYEDLK 193
Query: 780 FRFLK 784
FLK
Sbjct: 194 REFLK 198
>pdb|3LBY|A Chain A, Crystal Structure Of Smu.1697c, A Putative
Methyltransferase From Streptococcus Mutans In Complex
With Sah
pdb|3LBY|B Chain B, Crystal Structure Of Smu.1697c, A Putative
Methyltransferase From Streptococcus Mutans In Complex
With Sah
Length = 181
Score = 30.0 bits (66), Expect = 7.0, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 370 ILTDKTGTLTENRMIFRRCCIGG-----IFYGNETGDALKDVGL 408
++T TLT + I R IGG ++YG+E GD KD L
Sbjct: 104 VITQPATTLTAIKKILERLEIGGRLAIMVYYGHEGGDKEKDAVL 147
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 29.6 bits (65), Expect = 8.8, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 716 ICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQKADIGVGI 761
+ V P QK++ V+ L++ + +GDG ND + +AD+G+ +
Sbjct: 64 VIAEVLPHQKSEEVKKLQAKEVVAF-VGDGINDAPALAQADLGIAV 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,610,071
Number of Sequences: 62578
Number of extensions: 1233854
Number of successful extensions: 2556
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2469
Number of HSP's gapped (non-prelim): 91
length of query: 1096
length of database: 14,973,337
effective HSP length: 109
effective length of query: 987
effective length of database: 8,152,335
effective search space: 8046354645
effective search space used: 8046354645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)