BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001343
(1096 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 16/254 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 157
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 213
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
V+F + LA D+ +K WD L + FS G
Sbjct: 214 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 273
Query: 645 AVTTADNGFKILAN 658
V+ +++ + N
Sbjct: 274 IVSGSEDNLVYIWN 287
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 67 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 123
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 124 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 177
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 178 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 232
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 233 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 288
Query: 615 DNVNIL 620
I+
Sbjct: 289 QTKEIV 294
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 13/146 (8%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 196 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 253
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 254 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 307
Query: 501 CPHHKENIQFIFSTAIDGKIKAWLYD 526
H ENI + D IK W D
Sbjct: 308 ACHPTENIIASAALENDKTIKLWKSD 333
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 16/254 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 49 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 104
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 105 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 159
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 160 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 215
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
V+F + LA D+ +K WD L + FS G
Sbjct: 216 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 275
Query: 645 AVTTADNGFKILAN 658
V+ +++ + N
Sbjct: 276 IVSGSEDNLVYIWN 289
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 69 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 125
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 126 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 179
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 180 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 234
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 235 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 290
Query: 615 DNVNIL 620
I+
Sbjct: 291 QTKEIV 296
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 13/146 (8%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 198 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 255
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 256 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 309
Query: 501 CPHHKENIQFIFSTAIDGKIKAWLYD 526
H ENI + D IK W D
Sbjct: 310 ACHPTENIIASAALENDKTIKLWKSD 335
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 16/254 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 141
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 197
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
V+F + LA D+ +K WD L + FS G
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 257
Query: 645 AVTTADNGFKILAN 658
V+ +++ + N
Sbjct: 258 IVSGSEDNLVYIWN 271
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 108/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 51 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 107
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 108 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 161
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDT-----MGSRVDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + + +D D P + + +S +G + +
Sbjct: 162 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 216
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 217 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Query: 615 DNVNIL 620
I+
Sbjct: 273 QTKEIV 278
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 13/146 (8%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 180 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 238 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 291
Query: 501 CPHHKENIQFIFSTAIDGKIKAWLYD 526
H ENI + D IK W D
Sbjct: 292 ACHPTENIIASAALENDKTIKLWKSD 317
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 16/254 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 81 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 135
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 191
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
V+F + LA D+ +K WD L + FS G
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 251
Query: 645 AVTTADNGFKILAN 658
V+ +++ + N
Sbjct: 252 IVSGSEDNLVYIWN 265
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 108/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 45 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 101
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 102 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 155
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDT-----MGSRVDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + + +D D P + + +S +G + +
Sbjct: 156 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 210
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 211 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Query: 615 DNVNIL 620
I+
Sbjct: 267 QTKEIV 272
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 174 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 232 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 285
Query: 501 CPHHKENIQFIFSTAI--DGKIKAWLYD 526
H ENI I S A+ D IK W D
Sbjct: 286 ACHPTENI--IASAALENDKTIKLWKSD 311
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 16/254 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 141
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 197
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
V+F + LA D+ +K WD L + FS G
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 257
Query: 645 AVTTADNGFKILAN 658
V+ +++ + N
Sbjct: 258 IVSGSEDNLVYIWN 271
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 51 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 107
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 108 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 161
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 162 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 216
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 217 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Query: 615 DNVNIL 620
I+
Sbjct: 273 QTKEIV 278
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 13/146 (8%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 180 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 238 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 291
Query: 501 CPHHKENIQFIFSTAIDGKIKAWLYD 526
H ENI + D IK W D
Sbjct: 292 ACHPTENIIASAALENDKTIKLWKSD 317
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 16/254 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 77 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 131
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 132 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 187
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
V+F + LA D+ +K WD L + FS G
Sbjct: 188 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 247
Query: 645 AVTTADNGFKILAN 658
V+ +++ + N
Sbjct: 248 IVSGSEDNLVYIWN 261
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 108/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 41 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 97
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 98 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 151
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDT-----MGSRVDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + + +D D P + + +S +G + +
Sbjct: 152 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 206
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 207 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 262
Query: 615 DNVNIL 620
I+
Sbjct: 263 QTKEIV 268
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 13/146 (8%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 170 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 227
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 228 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 281
Query: 501 CPHHKENIQFIFSTAIDGKIKAWLYD 526
H ENI + D IK W D
Sbjct: 282 ACHPTENIIASAALENDKTIKLWKSD 307
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 16/254 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 141
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 197
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
V+F + LA D+ +K WD L + FS G
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 257
Query: 645 AVTTADNGFKILAN 658
V+ +++ + N
Sbjct: 258 IVSGSEDNLVYIWN 271
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 51 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 107
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 108 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 161
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 162 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 216
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 217 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Query: 615 DNVNIL 620
I+
Sbjct: 273 QTKEIV 278
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 180 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 238 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 291
Query: 501 CPHHKENIQFIFSTAI--DGKIKAWLYD 526
H ENI I S A+ D IK W D
Sbjct: 292 ACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 16/254 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 81 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 135
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 191
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
V+F + LA D+ +K WD L + FS G
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 251
Query: 645 AVTTADNGFKILAN 658
V+ +++ + N
Sbjct: 252 IVSGSEDNLVYIWN 265
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 108/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 45 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 101
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 102 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 155
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDT-----MGSRVDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + + +D D P + + +S +G + +
Sbjct: 156 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 210
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 211 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Query: 615 DNVNIL 620
I+
Sbjct: 267 QTKEIV 272
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 174 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 232 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 285
Query: 501 CPHHKENIQFIFSTAI--DGKIKAWLYD 526
H ENI I S A+ D IK W D
Sbjct: 286 ACHPTENI--IASAALENDKTIKLWKSD 311
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 16/254 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 26 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 81
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 82 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 136
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 137 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 192
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
V+F + LA D+ +K WD L + FS G
Sbjct: 193 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 252
Query: 645 AVTTADNGFKILAN 658
V+ +++ + N
Sbjct: 253 IVSGSEDNLVYIWN 266
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 46 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 102
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 103 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 156
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 157 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 211
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 212 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 267
Query: 615 DNVNIL 620
I+
Sbjct: 268 QTKEIV 273
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 175 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 232
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 233 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 286
Query: 501 CPHHKENIQFIFSTAI--DGKIKAWLYD 526
H ENI I S A+ D IK W D
Sbjct: 287 ACHPTENI--IASAALENDKTIKLWKSD 312
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 16/254 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 42 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 97
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 98 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 152
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 153 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 208
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
V+F + LA D+ +K WD L + FS G
Sbjct: 209 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 268
Query: 645 AVTTADNGFKILAN 658
V+ +++ + N
Sbjct: 269 IVSGSEDNLVYIWN 282
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 62 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 118
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 119 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 172
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 173 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 227
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 228 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 283
Query: 615 DNVNIL 620
I+
Sbjct: 284 QTKEIV 289
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 191 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 248
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 249 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 302
Query: 501 CPHHKENIQFIFSTAI--DGKIKAWLYD 526
H ENI I S A+ D IK W D
Sbjct: 303 ACHPTENI--IASAALENDKTIKLWKSD 328
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 16/254 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 24 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 79
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 80 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 134
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 135 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 190
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
V+F + LA D+ +K WD L + FS G
Sbjct: 191 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 250
Query: 645 AVTTADNGFKILAN 658
V+ +++ + N
Sbjct: 251 IVSGSEDNLVYIWN 264
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 108/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 44 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 100
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 101 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 154
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDT-----MGSRVDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + + +D D P + + +S +G + +
Sbjct: 155 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 209
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 210 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 265
Query: 615 DNVNIL 620
I+
Sbjct: 266 QTKEIV 271
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 13/146 (8%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 173 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 230
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 231 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 284
Query: 501 CPHHKENIQFIFSTAIDGKIKAWLYD 526
H ENI + D IK W D
Sbjct: 285 ACHPTENIIASAALENDKTIKLWKSD 310
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 16/254 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 30 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 85
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W D
Sbjct: 86 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 140
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 141 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 196
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
V+F + LA D+ +K WD L + FS G
Sbjct: 197 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 256
Query: 645 AVTTADNGFKILAN 658
V+ +++ + N
Sbjct: 257 IVSGSEDNLVYIWN 270
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 50 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 106
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 107 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 160
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 161 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 215
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 216 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 271
Query: 615 DNVNIL 620
I+
Sbjct: 272 QTKEIV 277
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 179 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 236
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 237 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 290
Query: 501 CPHHKENIQFIFSTAI--DGKIKAWLYD 526
H ENI I S A+ D IK W D
Sbjct: 291 ACHPTENI--IASAALENDKTIKLWKSD 316
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 109/254 (42%), Gaps = 16/254 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 28 AVSSVKFSPNGEWLAASSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH V+ C + I S + D ++ W D
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--D 138
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 194
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
V+F + LA D+ +K WD L + FS G
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 254
Query: 645 AVTTADNGFKILAN 658
V+ +++ + N
Sbjct: 255 IVSGSEDNLVYIWN 268
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 48 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 104
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 105 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 158
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 159 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 213
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 214 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Query: 615 DNVNIL 620
I+
Sbjct: 270 QTKEIV 275
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 177 RIWDTAS-GQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 235 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 501 CPHHKENIQFIFSTAI--DGKIKAWLYD 526
H ENI I S A+ D IK W D
Sbjct: 289 ACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 12/207 (5%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK 586
T A + + ++ DGS + S +S DG W+ + G +T
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDDNP 196
Query: 587 SNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA D+ +K WD
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWD 223
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 106/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 48 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 104
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G L H PV ++
Sbjct: 105 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV- 158
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDT-----MGSRVDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + + +D D P + + +S +G + +
Sbjct: 159 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 213
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 214 TLDND----LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Query: 615 DNVNIL 620
I+
Sbjct: 270 QTKEIV 275
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 177 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYT 234
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D ++ +W L +++ +GH V S
Sbjct: 235 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 501 CPHHKENIQFIFSTAI--DGKIKAWLYD 526
H ENI I S A+ D IK W D
Sbjct: 289 ACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 12/207 (5%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH Y C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK 586
T A + + ++ DGS + S +S DG W+ + G +T
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDDNP 196
Query: 587 SNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA D+ +K WD
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 48 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 104
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G L H PV ++
Sbjct: 105 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV- 158
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDT-----MGSRVDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + + +D D P + + +S +G + +
Sbjct: 159 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 213
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 214 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Query: 615 DNVNIL 620
I+
Sbjct: 270 QTKEIV 275
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 177 RIWDTASGQC-LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D ++ +W L +++ +GH V S
Sbjct: 235 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 501 CPHHKENIQFIFSTAI--DGKIKAWLYD 526
H ENI I S A+ D IK W D
Sbjct: 289 ACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 16/209 (7%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH V+ C + I S + D ++ W D
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--D 138
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 194
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA D+ +K WD
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 48 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 104
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 105 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 158
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 159 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 213
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 214 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Query: 615 DNVNIL 620
I+
Sbjct: 270 QTKEIV 275
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 15/137 (10%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 177 RIWDTAS-GQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 235 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 501 CPHHKENIQFIFSTAID 517
H ENI I S A++
Sbjct: 289 ACHPTENI--IASAALE 303
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 109/254 (42%), Gaps = 16/254 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ + LL
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +K+W++ SG+ L +GH V+ C + I S + D ++ W D
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--D 138
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 194
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
V+F + LA D+ +K WD L + FS G
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 254
Query: 645 AVTTADNGFKILAN 658
V+ +++ + N
Sbjct: 255 IVSGSEDNLVYIWN 268
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 26/246 (10%)
Query: 383 KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
K KIW A F+ +I + +S VAWS D N + A ++++ + L+
Sbjct: 48 KLIKIW--GAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 104
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
+ H V F + L +V+ D+ +++W++ +G+ L H PV ++
Sbjct: 105 ---TLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV- 158
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----VDYDAPGHWCTTMLYSADGSRLFSC 556
H + I S++ DG + W DT + +D D P + + +S +G + +
Sbjct: 159 -HFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAA 213
Query: 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVG-EDSQIKFWDM 614
D+ L W+ S+G +TY G + + + F T ++ G ED+ + W++
Sbjct: 214 TL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Query: 615 DNVNIL 620
I+
Sbjct: 270 QTKEIV 275
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 15/137 (10%)
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+IWD A+ + I D P VS V +SP+G Y+ A + ++L+ Y+ L+ ++
Sbjct: 177 RIWDTAS-GQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 446 QIDAHVGAVNDLAFAYPNKLLC----VVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSI 500
G N+ + N + +V+ +D L+ +W L +++ +GH V S
Sbjct: 235 ------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 501 CPHHKENIQFIFSTAID 517
H ENI I S A++
Sbjct: 289 ACHPTENI--IASAALE 303
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 22/250 (8%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
SV+ VA+ PDG + A ++L++ G L Q + H +V +AF+ +
Sbjct: 264 SVNGVAFRPDGQTIASASDDKTVKLWNRNG--QLLQ--TLTGHSSSVWGVAFSPDGQ--T 317
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527
+ + DDK +K+W +G+ L GH + V+ + + Q I S + D +K W +
Sbjct: 318 IASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVA--FSPDGQTIASASDDKTVKLWNRN- 374
Query: 528 MGSRVDYDAPGHWCTT--MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK 585
++ GH + + +S DG + S D + WN G + +T G
Sbjct: 375 --GQLLQTLTGHSSSVRGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQTLTGHSS 427
Query: 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645
GV F + +D +K W+ + + T T G ++ + FS +G +A
Sbjct: 428 SVWGVA-FSPDDQTIASASDDKTVKLWNRNGQLLQTLT---GHSSSVRGVAFSPDGQTIA 483
Query: 646 VTTADNGFKI 655
+ D K+
Sbjct: 484 SASDDKTVKL 493
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 105/250 (42%), Gaps = 22/250 (8%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
SV VA+SPDG + A ++L++ G L Q + H +V +AF+ +
Sbjct: 18 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQ--TLTGHSSSVWGVAFSPDGQ--T 71
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527
+ + DDK +K+W +G+ L GH + V + + Q I S + D +K W +
Sbjct: 72 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVA--FSPDGQTIASASDDKTVKLWNRN- 128
Query: 528 MGSRVDYDAPGHWCTT--MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK 585
++ GH + + +S DG + S D + WN G + +T G
Sbjct: 129 --GQLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQTLTGHSS 181
Query: 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645
GV F + +D +K W+ + + T T G ++ + FS +G +A
Sbjct: 182 SVWGVA-FSPDGQTIASASDDKTVKLWNRNGQLLQTLT---GHSSSVRGVAFSPDGQTIA 237
Query: 646 VTTADNGFKI 655
+ D K+
Sbjct: 238 SASDDKTVKL 247
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
SV VA+SPDG + A ++L++ G L Q + H +V +AF+ +
Sbjct: 469 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQ--TLTGHSSSVRGVAFSPDGQ--T 522
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523
+ + DDK +K+W +G+ L GH + V+ + + Q I S + D +K W
Sbjct: 523 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA--FSPDGQTIASASSDKTVKLW 576
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 105/250 (42%), Gaps = 22/250 (8%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
SV VA+SPDG + A ++L++ G L Q + H +V +AF+ +
Sbjct: 141 SVWGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQ--TLTGHSSSVWGVAFSPDGQ--T 194
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527
+ + DDK +K+W +G+ L GH + V + + Q I S + D +K W +
Sbjct: 195 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVA--FSPDGQTIASASDDKTVKLWNRN- 251
Query: 528 MGSRVDYDAPGHWCTT--MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK 585
++ GH + + + DG + S D + WN G + +T G
Sbjct: 252 --GQLLQTLTGHSSSVNGVAFRPDGQTIASASD----DKTVKLWNR-NGQLLQTLTGHSS 304
Query: 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645
GV F + +D +K W+ + ++ T T G ++ + FS +G +A
Sbjct: 305 SVWGVA-FSPDGQTIASASDDKTVKLWNRNGQHLQTLT---GHSSSVWGVAFSPDGQTIA 360
Query: 646 VTTADNGFKI 655
+ D K+
Sbjct: 361 SASDDKTVKL 370
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 94/217 (43%), Gaps = 18/217 (8%)
Query: 441 LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSI 500
+++ ++++AH +V +AF+ + + + DDK +K+W +G+ L GH + V+ +
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV 63
Query: 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTT--MLYSADGSRLFSCGT 558
+ Q I S + D +K W + ++ GH + + +S DG + S
Sbjct: 64 A--FSPDGQTIASASDDKTVKLWNRN---GQLLQTLTGHSSSVRGVAFSPDGQTIASASD 118
Query: 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618
D + WN G + +T G GV F + +D +K W+ +
Sbjct: 119 ----DKTVKLWNR-NGQLLQTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLWNRNGQL 172
Query: 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ T T G ++ + FS +G +A + D K+
Sbjct: 173 LQTLT---GHSSSVWGVAFSPDGQTIASASDDKTVKL 206
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 86/212 (40%), Gaps = 10/212 (4%)
Query: 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENI 508
H AV F+ + + +CG DK ++V++ +G KL + HE V +C +
Sbjct: 620 HTDAVYHACFSEDGQR--IASCGADKTLQVFKAETGEKLLEIKAHEDEV--LCCAFSTDD 675
Query: 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR-LFSCGTSKDGDSFLV 567
+FI + ++D K+K W T YD ++ L + G+S D FL
Sbjct: 676 RFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSS---DCFLK 732
Query: 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627
W+ ++ + T G N +F + D +K WD + N S + +
Sbjct: 733 LWDLNQKECRNTMFGHTNSVNH-CRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQ 791
Query: 628 GLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659
NL + E + + + +G +I+ A
Sbjct: 792 FFLNLEDPQEDMEVIVKCCSWSADGARIMVAA 823
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 37/229 (16%)
Query: 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSICPHHKE 506
D H VN F + L + T D +K+W+L+ ++ N GH V + C +
Sbjct: 702 DEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSV-NHCRFSPD 760
Query: 507 NIQFIFSTAIDGKIKAWLYDTMGSRV----------------DYDAPGHWCTTMLYSADG 550
+ + + S + DG +K W + R D + C+ +SADG
Sbjct: 761 D-KLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCS---WSADG 816
Query: 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD--TTQNHFLAVGEDSQ 608
+R+ +K FL + + S G + + G + +Q+ + QNH LAV SQ
Sbjct: 817 ARIMVAAKNK---IFLFDIHTS-GLLGEIHTG----HHSTIQYCDFSPQNH-LAVVALSQ 867
Query: 609 --IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
++ W+ D+ + + D G L + + FS +G+ ++ D ++
Sbjct: 868 YCVELWNTDSRSKV--ADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRL 914
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 91/251 (36%), Gaps = 37/251 (14%)
Query: 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCV 468
VS SP Y+ I++ + + Q H V + F K L
Sbjct: 970 VSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQ---HKKTVWHIQFTADEKTL-- 1024
Query: 469 VTCGDDKLIKVWELSGRKLFNFEGHEAPV--YSICPHHKENIQFIFSTAIDGKIKAWLYD 526
++ DD I+VW K GH+ V + + + + + S + DG +K W
Sbjct: 1025 ISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSR-----LLSWSFDGTVKVWNII 1079
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD----SFLVEWNESEGTIKRTYAG 582
T D+ + S D ++ S K L+ +E G
Sbjct: 1080 TGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRG-------- 1131
Query: 583 FRKKSNGVVQFD--TTQNHFLAVGEDS-QIKFWDMDN---VNILTSTDAEGGLPN---LP 633
NG V+ + + LA G+D+ +I+ W++ N +++ EG + +
Sbjct: 1132 ----HNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVT 1187
Query: 634 RLRFSKEGNLL 644
L FS +G +L
Sbjct: 1188 DLCFSPDGKML 1198
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 98/261 (37%), Gaps = 30/261 (11%)
Query: 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCV 468
V+RV + P + + A I+++ Y + R + H +V D++F + KLL
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT---LKGHTDSVQDISFDHSGKLL-- 165
Query: 469 VTCGDDKLIKVWELSGRKLFN-FEGHEAPV--YSICPHHKENIQFIFSTAIDGKIKAWLY 525
+C D IK+W+ G + GH+ V SI P N I S + D IK W
Sbjct: 166 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP----NGDHIVSASRDKTIKMWEV 221
Query: 526 DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR------- 578
T + W + + DG+ + SC + ++V E + ++
Sbjct: 222 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 281
Query: 579 -------TYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLP 630
+Y+ + + + FL G D IK WD+ L + G
Sbjct: 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL---VGHD 338
Query: 631 NLPRLRFSKEGNLLAVTTADN 651
N R G ++ AD+
Sbjct: 339 NWVRGVLFHSGGKFILSCADD 359
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 474 DKLIKVWELS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV 532
DK IK+W++S G L GH+ V + H +FI S A D ++ W Y
Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH--SGGKFILSCADDKTLRVWDYKNKRCMK 374
Query: 533 DYDAPGHWCTTM 544
+A H+ T++
Sbjct: 375 TLNAHEHFVTSL 386
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSICPHHKEN 507
H V + F K +++C DDK ++VW+ ++ HE V S+ H +
Sbjct: 336 GHDNWVRGVLFHSGGKF--ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH--KT 391
Query: 508 IQFIFSTAIDGKIKAW 523
++ + ++D +K W
Sbjct: 392 APYVVTGSVDQTVKVW 407
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 94/239 (39%), Gaps = 33/239 (13%)
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
NYV +I++Y L Q + H G V L +A+ L V+ D+ ++
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQ---LSGHDGGVWALKYAHGGIL---VSGSTDRTVR 186
Query: 479 VWELS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD---- 533
VW++ G FEGH + V + +NI++I + + D + W S D
Sbjct: 187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246
Query: 534 YDAP-----------------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576
+D P GH + S G+ + S D+ L+ W+ ++
Sbjct: 247 HDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY----DNTLIVWDVAQMKC 302
Query: 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635
+G + + +D + ++ D+ I+ WD++N ++ + L L RL
Sbjct: 303 LYILSGHTDRIYSTI-YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 360
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 469 VTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527
++ D I++W+L +G ++ +GH A V + + + +F+ S A DG I+ W +
Sbjct: 326 ISASMDTTIRIWDLENGELMYTLQGHTALVGLL----RLSDKFLVSAAADGSIRGWDAND 381
Query: 528 MGSRVDYDAPGHWCTTMLYSAD 549
+ Y T Y +D
Sbjct: 382 YSRKFSYHHTNLSAITTFYVSD 403
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 84/212 (39%), Gaps = 30/212 (14%)
Query: 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSICPHH 504
Q+ H G V L +A+ L V+ D+ ++VW++ G FEGH + V +
Sbjct: 157 QLSGHDGGVWALKYAHGGIL---VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE 213
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVD----YDAP-----------------GHWCTT 543
+NI++I + + D + W S D +D P GH +
Sbjct: 214 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASV 273
Query: 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV 603
S G+ + S D+ L+ W+ ++ +G + + +D + ++
Sbjct: 274 RTVSGHGNIVVSGSY----DNTLIVWDVAQXKCLYILSGHTDRIYSTI-YDHERKRCISA 328
Query: 604 GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635
D+ I+ WD++N + + L L RL
Sbjct: 329 SXDTTIRIWDLENGELXYTLQGHTALVGLLRL 360
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 469 VTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527
++ D I++W+L +G + +GH A V + + + +F+ S A DG I+ W +
Sbjct: 326 ISASXDTTIRIWDLENGELXYTLQGHTALVGLL----RLSDKFLVSAAADGSIRGWDAND 381
Query: 528 MGSRVDYDAPGHWCTTMLYSAD 549
+ Y T Y +D
Sbjct: 382 YSRKFSYHHTNLSAITTFYVSD 403
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 91/234 (38%), Gaps = 30/234 (12%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H G V S+ LLL S + + W+L D+ P + S + I
Sbjct: 16 HNG-WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVR-------SFKGHSHI 67
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461
+D ++ DG Y A ++L+ A ++ VG +D+
Sbjct: 68 VQDCTLT-------ADGAYALSASWDKTLRLWDVATGETYQRF------VGHKSDVMSVD 114
Query: 462 PNKLLCVVTCGD-DKLIKVWELSGRKLFNFEGHEAPV--YSICPHHK--ENIQFIFSTAI 516
+K ++ G DK IKVW + G+ L GH V + P+ K ++ I S
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 517 DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
D +KAW + D+ T+ S DG+ + S G KDG+ L WN
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEIML--WN 224
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 91/234 (38%), Gaps = 30/234 (12%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H G V S+ LLL S + + W+L D+ P + S + I
Sbjct: 16 HNG-WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVR-------SFKGHSHI 67
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461
+D ++ DG Y A ++L+ A ++ VG +D+
Sbjct: 68 VQDCTLT-------ADGAYALSASWDKTLRLWDVATGETYQRF------VGHKSDVMSVD 114
Query: 462 PNKLLCVVTCGD-DKLIKVWELSGRKLFNFEGHEAPV--YSICPHHK--ENIQFIFSTAI 516
+K ++ G DK IKVW + G+ L GH V + P+ K ++ I S
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 517 DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
D +KAW + D+ T+ S DG+ + S G KDG+ L WN
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEIML--WN 224
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 91/234 (38%), Gaps = 30/234 (12%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H G V S+ LLL S + + W+L D+ P + S + I
Sbjct: 16 HNG-WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVR-------SFKGHSHI 67
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461
+D ++ DG Y A ++L+ A ++ VG +D+
Sbjct: 68 VQDCTLT-------ADGAYALSASWDKTLRLWDVATGETYQRF------VGHKSDVMSVD 114
Query: 462 PNKLLCVVTCGD-DKLIKVWELSGRKLFNFEGHEAPV--YSICPHHK--ENIQFIFSTAI 516
+K ++ G DK IKVW + G+ L GH V + P+ K ++ I S
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 517 DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
D +KAW + D+ T+ S DG+ + S G KDG+ L WN
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEIML--WN 224
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 91/234 (38%), Gaps = 30/234 (12%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H G V S+ LLL S + + W+L D+ P + S + I
Sbjct: 10 HNG-WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVR-------SFKGHSHI 61
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461
+D ++ DG Y A ++L+ A ++ VG +D+
Sbjct: 62 VQDCTLT-------ADGAYALSASWDKTLRLWDVATGETYQRF------VGHKSDVMSVD 108
Query: 462 PNKLLCVVTCGD-DKLIKVWELSGRKLFNFEGHEAPV--YSICPHHK--ENIQFIFSTAI 516
+K ++ G DK IKVW + G+ L GH V + P+ K ++ I S
Sbjct: 109 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 168
Query: 517 DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
D +KAW + D+ T+ S DG+ + S G KDG+ L WN
Sbjct: 169 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEIML--WN 218
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 91/234 (38%), Gaps = 30/234 (12%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H G V S+ LLL S + + W+L D+ P + S + I
Sbjct: 16 HNG-WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVR-------SFKGHSHI 67
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461
+D ++ DG Y A ++L+ A ++ VG +D+
Sbjct: 68 VQDCTLT-------ADGAYALSASWDKTLRLWDVATGETYQRF------VGHKSDVMSVD 114
Query: 462 PNKLLCVVTCGD-DKLIKVWELSGRKLFNFEGHEAPV--YSICPHHK--ENIQFIFSTAI 516
+K ++ G DK IKVW + G+ L GH V + P+ K ++ I S
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 517 DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
D +KAW + D+ T+ S DG+ + S G KDG+ L WN
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEIML--WN 224
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 23/188 (12%)
Query: 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409
+ ++P+ LL S + I LW+++ V K K+ D +IF V
Sbjct: 183 LSWNPNLSGHLLSASDDHTICLWDISA----VPKEGKVVDAK--------TIFTGHTAVV 230
Query: 410 SRVAWS--PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
V+W + + VA + L+ ++ +N + +DAH VN L+F P
Sbjct: 231 EDVSWHLLHESLFGSVADDQKLM-IWDTRSNNTSKPSHSVDAHTAEVNCLSFN-PYSEFI 288
Query: 468 VVTCGDDKLIKVWELSG--RKLFNFEGHEAPVYSI--CPHHKENIQFIFSTAIDGKIKAW 523
+ T DK + +W+L KL +FE H+ ++ + PH N + S+ D ++ W
Sbjct: 289 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLNVW 345
Query: 524 LYDTMGSR 531
+G
Sbjct: 346 DLSKIGEE 353
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 16/116 (13%)
Query: 907 LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHET---------QLAIY 957
+C+W I K V + A TG T V + V ++HE+ +L I+
Sbjct: 202 ICLWDISAVPKEGKV---VDAKTIFTGHTAV---VEDVSWHLLHESLFGSVADDQKLMIW 255
Query: 958 DASKMERIRQWTPQDALSAPISCAVYSCNSQLVFAT-FCDGNIGVFDADTLRLRCY 1012
D + DA +A ++C ++ S+ + AT D + ++D L+L+ +
Sbjct: 256 DTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 311
Score = 29.6 bits (65), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 68/166 (40%), Gaps = 34/166 (20%)
Query: 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404
+ V + F+P + +L GS++ + LW+L +L + F+
Sbjct: 274 AEVNCLSFNPYSEFILATGSADKTVALWDLR------------------NLKLKLHSFES 315
Query: 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA-------------HV 451
+ +V WSP + +A + +L + S + S DA H
Sbjct: 316 HKDEIFQVQWSPHNETI-LASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHT 374
Query: 452 GAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPV 497
++D ++ PN+ + + +D +++VW+++ ++N E E V
Sbjct: 375 AKISDFSWN-PNEPWVICSVSEDNIMQVWQMA-ENIYNDEDPEGSV 418
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 90/233 (38%), Gaps = 28/233 (12%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H G V S+ LLL S + + W+L D+ P + S + I
Sbjct: 16 HNG-WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVR-------SFKGHSHI 67
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461
+D ++ DG Y A ++L+ A ++ + V +V+
Sbjct: 68 VQDCTLT-------ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVD-----I 115
Query: 462 PNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPV--YSICPHHK--ENIQFIFSTAID 517
K +++ DK IKVW + G+ L GH V + P+ K ++ I S D
Sbjct: 116 DKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
+KAW + D+ T+ S DG+ + S G KDG+ L WN
Sbjct: 176 KXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEIXL--WN 224
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR--KLFN-FEGHEAPVYSICPHH 504
+AH ++D Y K L TC DK IK++E+ G KL + GHE PV+ + H
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 505 KENIQFIFSTAIDGKIKAW 523
+ + S + DGK+ W
Sbjct: 64 PKFGTILASCSYDGKVLIW 82
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 23/188 (12%)
Query: 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409
+ ++P+ LL S + I LW++ K ++ D +IF V
Sbjct: 187 LSWNPNLNGYLLSASDDHTICLWDI----NATPKEHRVIDAK--------NIFTGHTAVV 234
Query: 410 SRVAWS--PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
VAW + + VA + L+ ++ +N + +DAH VN L+F P
Sbjct: 235 EDVAWHLLHESLFGSVADDQKLM-IWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFI 292
Query: 468 VVTCGDDKLIKVWELSG--RKLFNFEGHEAPVYSI--CPHHKENIQFIFSTAIDGKIKAW 523
+ T DK + +W+L KL +FE H+ ++ + PH N + S+ D ++ W
Sbjct: 293 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVW 349
Query: 524 LYDTMGSR 531
+G
Sbjct: 350 DLSKIGEE 357
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 26/145 (17%)
Query: 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRV 937
L+++P N + ++D TI C+W I+ K V I A TG T V
Sbjct: 187 LSWNPNLNGYLLSASDDHTI----------CLWDINATPKEHRV---IDAKNIFTGHTAV 233
Query: 938 QFNADQVRMLVVHET---------QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ 988
+ V ++HE+ +L I+D + DA +A ++C ++ S+
Sbjct: 234 ---VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 290
Query: 989 LVFAT-FCDGNIGVFDADTLRLRCY 1012
+ AT D + ++D L+L+ +
Sbjct: 291 FILATGSADKTVALWDLRNLKLKLH 315
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 69/166 (41%), Gaps = 34/166 (20%)
Query: 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404
+ V + F+P + +L GS++ + LW+L +L + F+
Sbjct: 278 AEVNCLSFNPYSEFILATGSADKTVALWDLR------------------NLKLKLHSFES 319
Query: 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA-------------HV 451
+ +V WSP + +A + +L+ + S + S DA H
Sbjct: 320 HKDEIFQVQWSPHNETI-LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT 378
Query: 452 GAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPV 497
++D ++ PN+ + + +D +++VW+++ ++N E E P
Sbjct: 379 AKISDFSWN-PNEPWIICSVSEDNIMQVWQMA-ENVYNDEEPEIPA 422
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR--KLFN-FEGHEAPVYSICPHH 504
+AH ++D Y K L TC DK IK++E+ G KL + GHE PV+ + H
Sbjct: 8 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 65
Query: 505 KENIQFIFSTAIDGKIKAW 523
+ + S + DGK+ W
Sbjct: 66 PKFGTILASCSYDGKVLIW 84
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/239 (19%), Positives = 95/239 (39%), Gaps = 46/239 (19%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
+ S+V ++ F+ +L G +NGEI IWDM C+ S
Sbjct: 111 NHSSSVKTVKFNAKQDNVLASGGNNGEIF----------------IWDMNKCT----ESP 150
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461
P++ + S D + +A+ + L +++ AGS++ + A ++ L++
Sbjct: 151 SNYTPLTPGQSMSSVD-EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIH-LSYTS 208
Query: 462 PN------------------KLLCVVTCGDDKLIKVWELSGR----KLFNFEGHEAPVYS 499
PN ++ +D I +W+L + N +GH+ + S
Sbjct: 209 PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN-QGHQKGILS 267
Query: 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558
+ H++ + S+ D + W ++ + A G+WC ++ + LF+C +
Sbjct: 268 LDWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS 325
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG--RKLFN-FEGHEAPVYSICPHH 504
+AH ++D Y K L TC DK IK++E+ G KL + GHE PV+ + H
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 505 KENIQFIFSTAIDGKIKAW 523
+ + S + DGK+ W
Sbjct: 64 PKFGTILASCSYDGKVLIW 82
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 23/188 (12%)
Query: 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409
+ ++P+ LL S + I LW++ K ++ D +IF V
Sbjct: 189 LSWNPNLNGYLLSASDDHTICLWDI----NATPKEHRVIDAK--------NIFTGHTAVV 236
Query: 410 SRVAWS--PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
VAW + + VA + L+ ++ +N + +DAH VN L+F P
Sbjct: 237 EDVAWHLLHESLFGSVADDQKLM-IWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFI 294
Query: 468 VVTCGDDKLIKVWELSG--RKLFNFEGHEAPVYSI--CPHHKENIQFIFSTAIDGKIKAW 523
+ T DK + +W+L KL +FE H+ ++ + PH N + S+ D ++ W
Sbjct: 295 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVW 351
Query: 524 LYDTMGSR 531
+G
Sbjct: 352 DLSKIGEE 359
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 26/145 (17%)
Query: 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRV 937
L+++P N + ++D TI C+W I+ K V I A TG T V
Sbjct: 189 LSWNPNLNGYLLSASDDHTI----------CLWDINATPKEHRV---IDAKNIFTGHTAV 235
Query: 938 QFNADQVRMLVVHET---------QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ 988
+ V ++HE+ +L I+D + DA +A ++C ++ S+
Sbjct: 236 ---VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 292
Query: 989 LVFAT-FCDGNIGVFDADTLRLRCY 1012
+ AT D + ++D L+L+ +
Sbjct: 293 FILATGSADKTVALWDLRNLKLKLH 317
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 69/166 (41%), Gaps = 34/166 (20%)
Query: 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404
+ V + F+P + +L GS++ + LW+L +L + F+
Sbjct: 280 AEVNCLSFNPYSEFILATGSADKTVALWDLR------------------NLKLKLHSFES 321
Query: 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA-------------HV 451
+ +V WSP + +A + +L+ + S + S DA H
Sbjct: 322 HKDEIFQVQWSPHNETI-LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT 380
Query: 452 GAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPV 497
++D ++ PN+ + + +D +++VW+++ ++N E E P
Sbjct: 381 AKISDFSWN-PNEPWIICSVSEDNIMQVWQMA-ENVYNDEEPEIPA 424
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG--RKLFN-FEGHEAPVYSICPHH 504
+AH ++D Y K + TC DK IK++E+ G KL + GHE PV+ + H
Sbjct: 6 NAHNEMIHDAVMDYYGKRMA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 505 KENIQFIFSTAIDGKIKAW 523
+ + S + DGK+ W
Sbjct: 64 PKFGTILASCSYDGKVMIW 82
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 23/188 (12%)
Query: 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409
+ ++P+ LL S + I LW++ K ++ D +IF V
Sbjct: 191 LSWNPNLNGYLLSASDDHTICLWDI----NATPKEHRVIDAK--------NIFTGHTAVV 238
Query: 410 SRVAWS--PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
VAW + + VA + L+ ++ +N + +DAH VN L+F P
Sbjct: 239 EDVAWHLLHESLFGSVADDQKLM-IWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFI 296
Query: 468 VVTCGDDKLIKVWELSG--RKLFNFEGHEAPVYSI--CPHHKENIQFIFSTAIDGKIKAW 523
+ T DK + +W+L KL +FE H+ ++ + PH N + S+ D ++ W
Sbjct: 297 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVW 353
Query: 524 LYDTMGSR 531
+G
Sbjct: 354 DLSKIGEE 361
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 26/145 (17%)
Query: 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRV 937
L+++P N + ++D TI C+W I+ K V I A TG T V
Sbjct: 191 LSWNPNLNGYLLSASDDHTI----------CLWDINATPKEHRV---IDAKNIFTGHTAV 237
Query: 938 QFNADQVRMLVVHET---------QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ 988
+ V ++HE+ +L I+D + DA +A ++C ++ S+
Sbjct: 238 ---VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 294
Query: 989 LVFAT-FCDGNIGVFDADTLRLRCY 1012
+ AT D + ++D L+L+ +
Sbjct: 295 FILATGSADKTVALWDLRNLKLKLH 319
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 16/159 (10%)
Query: 353 HPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412
HP + L + G TL DR + +IW S ++ + + +V +V
Sbjct: 14 HPDSRCWFLAWNPAG--TLLASCGGDRRI----RIWGTEGDSWICKSVLSEGHQRTVRKV 67
Query: 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG 472
AWSP GNY+ A ++ +D + ++ H V +A+A LL TC
Sbjct: 68 AWSPCGNYLASASFDATTCIWK-KNQDDFECVTTLEGHENEVKSVAWAPSGNLL--ATCS 124
Query: 473 DDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFI 511
DK + VWE+ E E S+ H ++++ +
Sbjct: 125 RDKSVWVWEVD-------EEDEYECVSVLNSHTQDVKHV 156
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 16/122 (13%)
Query: 541 CTTMLYSADGSRLFSCGTSK-------DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF 593
C + ++ G+ L SCG + +GDS++ + SEG +RT RK V +
Sbjct: 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH-QRT---VRK-----VAW 69
Query: 594 DTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653
N+ + D+ W + + T EG + + ++ GNLLA + D
Sbjct: 70 SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSV 129
Query: 654 KI 655
+
Sbjct: 130 WV 131
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 30/139 (21%)
Query: 439 NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS-GRKLFNFEGHEAPV 497
++ + S + H G V+ +A + P+ LC + G D ++ +W+L+ G+KL++ E + +
Sbjct: 549 SNCKLRSTLAGHTGYVSTVAVS-PDGSLCA-SGGKDGVVLLWDLAEGKKLYSLEANSV-I 605
Query: 498 YSIC--PHHKENIQFIFSTAIDGKIKAWLYDTM-------------GSRVDYDAPGH--- 539
+++C P+ ++ A + IK W ++ + D P
Sbjct: 606 HALCFSPN-----RYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKR 660
Query: 540 ---WCTTMLYSADGSRLFS 555
+CT++ +SADGS LFS
Sbjct: 661 KVIYCTSLNWSADGSTLFS 679
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 81/208 (38%), Gaps = 28/208 (13%)
Query: 302 HEQLMKRLRPAPSAEEVTYSSSRHQT---WSL--DDLPRTVAVSLHQGSTVISMDF-HPS 355
H ++ + ++ S+SR ++ W L DD VA G + D S
Sbjct: 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS 440
Query: 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415
L GS +GE+ LW+LA A S KDV VA+S
Sbjct: 441 DGQFALSGSWDGELRLWDLA---------------AGVSTRRFVGHTKDVL----SVAFS 481
Query: 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLL-CVVTCGDD 474
D + A I+L++ G + H V+ + F+ PN L +V+ D
Sbjct: 482 LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS-PNTLQPTIVSASWD 540
Query: 475 KLIKVWELSGRKLFN-FEGHEAPVYSIC 501
K +KVW LS KL + GH V ++
Sbjct: 541 KTVKVWNLSNCKLRSTLAGHTGYVSTVA 568
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG--RKLFN-FEGHEAPVYSICPHH 504
+AH ++D Y K TC DK IK++E+ G KL + GHE PV+ + H
Sbjct: 6 NAHNEXIHDAVXDYYGKRXA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 505 KENIQFIFSTAIDGKIKAW 523
+ + S + DGK+ W
Sbjct: 64 PKFGTILASCSYDGKVXIW 82
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 63/285 (22%), Positives = 114/285 (40%), Gaps = 51/285 (17%)
Query: 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415
H +LL GS + +++W ++ + F++ D+ A I + V VAWS
Sbjct: 69 HTSLLAAGSFDSTVSIWA---KEESADRTFEM-DLLA--------IIEGHENEVKGVAWS 116
Query: 416 PDGNYVGVAFTKHLIQLYSYAGSND-------LRQHSQIDAHVGAVNDLAFAYPNKLLCV 468
DG Y+ + ++ S + L++HSQ HV +P++ L
Sbjct: 117 NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV-------IWHPSEALLA 169
Query: 469 VTCGDDKLIKVW---ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLY 525
+ DD +++W + + GHE V+S E + + S + D ++ W Y
Sbjct: 170 SSSYDDT-VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228
Query: 526 DTMGSRVDYDAPGHW-CTTMLYSADGSRLFSCGTSKDG-------DSFLVEWNESEGTIK 577
MG D D W C +L ++++ +G D L + E +G K
Sbjct: 229 --MGD--DEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWK 284
Query: 578 RTYAGFRKKSNGVVQFDTTQ------NHFLAV-GEDSQIKFWDMD 615
+A R +GV + + + LA G+D + FW ++
Sbjct: 285 -VFAK-RALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327
Score = 29.6 bits (65), Expect = 9.0, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 62/150 (41%), Gaps = 16/150 (10%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPN 463
++ VAW P + + + +++ S D + + I+ H V +A++ N
Sbjct: 60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS--N 117
Query: 464 KLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523
+ TC DK + +WE + G E S+ H ++++ + + + +
Sbjct: 118 DGYYLATCSRDKSVWIWET------DESGEEYECISVLQEHSQDVKHVIWHPSEALLASS 171
Query: 524 LY-DTMGSRVDYDAPGHW-CTTMLYSADGS 551
Y DT+ DYD W C +L +G+
Sbjct: 172 SYDDTVRIWKDYD--DDWECVAVLNGHEGT 199
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 30/223 (13%)
Query: 360 LLVGSSNGEITLWELAMRDRL---VSKPFKIWDMAACSLPFQASI------FKDVPISVS 410
L VG+S+ E+ LW++ + RL S ++ ++ S + DV ++
Sbjct: 173 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 232
Query: 411 RVA-------------WSPDGNYVGVAFTKHLIQLYSYA-GSNDLRQHSQIDAHVGAVND 456
VA W+PDG ++ +L+ ++ A G H GAV
Sbjct: 233 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 292
Query: 457 LAFA-YPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSI--CPHHKENIQFIF 512
+A+ + + +L D+ I++W + SG L + H + V SI PH+KE I
Sbjct: 293 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELIS--G 349
Query: 513 STAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555
++ W Y TM + ++ S DG+ + S
Sbjct: 350 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 392
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVN 455
+S VAW +GNY+ V + +QL+ LR + A VG+++
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS 207
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465
PIS AW+ D + + H + +Y +G+ ++ H ++ H G V + +A +
Sbjct: 10 PISCH--AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGIDWAPDSNR 66
Query: 466 LCVVTCGDDKLIKVWELSGR 485
+VTCG D+ VW L GR
Sbjct: 67 --IVTCGTDRNAYVWTLKGR 84
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 30/223 (13%)
Query: 360 LLVGSSNGEITLWELAMRDRL---VSKPFKIWDMAACSLPFQASI------FKDVPISVS 410
L VG+S+ E+ LW++ + RL S ++ ++ S + DV ++
Sbjct: 162 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 221
Query: 411 RVA-------------WSPDGNYVGVAFTKHLIQLYSYA-GSNDLRQHSQIDAHVGAVND 456
VA W+PDG ++ +L+ ++ A G H GAV
Sbjct: 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 281
Query: 457 LAFA-YPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSI--CPHHKENIQFIF 512
+A+ + + +L D+ I++W + SG L + H + V SI PH+KE I
Sbjct: 282 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELIS--G 338
Query: 513 STAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555
++ W Y TM + ++ S DG+ + S
Sbjct: 339 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 381
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVN 455
+S VAW +GNY+ V + +QL+ LR + A VG+++
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS 196
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465
PIS AW+ D + + H + +Y +G+ ++ H ++ H G V + +A +
Sbjct: 10 PISCH--AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNR 66
Query: 466 LCVVTCGDDKLIKVWELSGR 485
+VTCG D+ VW L GR
Sbjct: 67 --IVTCGTDRNAYVWTLKGR 84
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 84/373 (22%), Positives = 138/373 (36%), Gaps = 80/373 (21%)
Query: 302 HEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLL 361
H + ++ P ++ S+SR +T + L R + G ++ H SH +
Sbjct: 14 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRD---ETNYGIPQRALRGH-SHFVSDV 69
Query: 362 VGSSNGEITL---WELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
V SS+G+ L W+ +R +WD+ + + F V VA+S D
Sbjct: 70 VISSDGQFALSGSWDGTLR---------LWDLTTGTTTRR---FVGHTKDVLSVAFSSDN 117
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
+ I+L++ G + Q ++H V+ + F+ + +V+CG DKL+K
Sbjct: 118 RQIVSGSRDKTIKLWNTLGV--CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 175
Query: 479 VWELSGRKL-FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
VW L+ KL N GH +
Sbjct: 176 VWNLANCKLKTNHIGHTGYL---------------------------------------- 195
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
T+ S DGS S G KDG + L W+ +EG K Y + F +
Sbjct: 196 ----NTVTVSPDGSLCASGG--KDGQAML--WDLNEG--KHLYTLDGGDIINALCF-SPN 244
Query: 598 NHFLAVGEDSQIKFWDMDNVNI-------LTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650
++L IK WD++ I + ST ++ P L +S +G L D
Sbjct: 245 RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD 304
Query: 651 NGFKILANAIGLR 663
N ++ IG R
Sbjct: 305 NLVRVWQVTIGTR 317
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 84/373 (22%), Positives = 138/373 (36%), Gaps = 80/373 (21%)
Query: 302 HEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLL 361
H + ++ P ++ S+SR +T + L R + G ++ H SH +
Sbjct: 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRD---ETNYGIPQRALRGH-SHFVSDV 92
Query: 362 VGSSNGEITL---WELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
V SS+G+ L W+ +R +WD+ + + F V VA+S D
Sbjct: 93 VISSDGQFALSGSWDGTLR---------LWDLTTGTTTRR---FVGHTKDVLSVAFSSDN 140
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
+ I+L++ G + Q ++H V+ + F+ + +V+CG DKL+K
Sbjct: 141 RQIVSGSRDKTIKLWNTLGV--CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198
Query: 479 VWELSGRKL-FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
VW L+ KL N GH +
Sbjct: 199 VWNLANCKLKTNHIGHTGYL---------------------------------------- 218
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
T+ S DGS S G KDG + L W+ +EG K Y + F +
Sbjct: 219 ----NTVTVSPDGSLCASGG--KDGQAML--WDLNEG--KHLYTLDGGDIINALCF-SPN 267
Query: 598 NHFLAVGEDSQIKFWDMDNVNI-------LTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650
++L IK WD++ I + ST ++ P L +S +G L D
Sbjct: 268 RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD 327
Query: 651 NGFKILANAIGLR 663
N ++ IG R
Sbjct: 328 NLVRVWQVTIGTR 340
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 91/211 (43%), Gaps = 25/211 (11%)
Query: 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408
S+ +HP+H + + VGS G+I LW ++D KP I + A S
Sbjct: 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKD----KPTFIKGIGAGG-------------S 166
Query: 409 VSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
++ + ++P + N + + +L + G N LR + D L + +++
Sbjct: 167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NILRVFASSDTINIWFCSLDVSASSRM-- 223
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527
VVT + + + + G++L+N H+ V + + + F+ + ++D +K W
Sbjct: 224 VVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCD-WFLATASVDQTVKIWDLRQ 282
Query: 528 MGSRVD--YDAPG-HWCTTMLYSADGSRLFS 555
+ + Y P H +S DG+RL +
Sbjct: 283 VRGKASFLYSLPHRHPVNAACFSPDGARLLT 313
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 91/211 (43%), Gaps = 25/211 (11%)
Query: 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408
S+ +HP+H + + VGS G+I LW ++D KP I + A S
Sbjct: 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKD----KPTFIKGIGAGG-------------S 166
Query: 409 VSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
++ + ++P + N + + +L + G N LR + D L + +++
Sbjct: 167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NILRVFASSDTINIWFCSLDVSASSRM-- 223
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527
VVT + + + + G++L+N H+ V + + + F+ + ++D +K W
Sbjct: 224 VVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCD-WFLATASVDQTVKIWDLRQ 282
Query: 528 MGSRVD--YDAPG-HWCTTMLYSADGSRLFS 555
+ + Y P H +S DG+RL +
Sbjct: 283 VRGKASFLYSLPHRHPVNAACFSPDGARLLT 313
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 91/211 (43%), Gaps = 25/211 (11%)
Query: 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408
S+ +HP+H + + VGS G+I LW ++D KP I + A S
Sbjct: 125 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKD----KPTFIKGIGAGG-------------S 167
Query: 409 VSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
++ + ++P + N + + +L + G N LR + D L + +++
Sbjct: 168 ITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NILRVFASSDTINIWFCSLDVSASSRM-- 224
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527
VVT + + + + G++L+N H+ V + + + F+ + ++D +K W
Sbjct: 225 VVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCD-WFLATASVDQTVKIWDLRQ 283
Query: 528 MGSRVD--YDAPG-HWCTTMLYSADGSRLFS 555
+ + Y P H +S DG+RL +
Sbjct: 284 VRGKASFLYSLPHRHPVNAACFSPDGARLLT 314
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 30/223 (13%)
Query: 360 LLVGSSNGEITLWELAMRDRL---VSKPFKIWDMAACSLPFQASI------FKDVPISVS 410
L VG+S+ E+ LW++ + RL S ++ ++ S + DV ++
Sbjct: 82 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 141
Query: 411 RVA-------------WSPDGNYVGVAFTKHLIQLYSYA-GSNDLRQHSQIDAHVGAVND 456
VA W+PDG ++ +L+ ++ A G H GAV
Sbjct: 142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 201
Query: 457 LAFA-YPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSI--CPHHKENIQFIF 512
+A+ + + +L D+ I++W + SG L + H + V SI PH+KE I
Sbjct: 202 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELIS--G 258
Query: 513 STAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555
++ W Y TM + ++ S DG+ + S
Sbjct: 259 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 301
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVN 455
+S VAW +GNY+ V + +QL+ LR + A VG+++
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS 116
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 36.6 bits (83), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 786 GVQKLWKWHRNEQNPSGKATASA--VPQHWLPSSG--LLMANDVAGVNLEEAVPCI-ALS 840
GVQ + WH E +P AT + V + S G L+ + V E C
Sbjct: 22 GVQ--FNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYD 79
Query: 841 KNDSYVMSATGGK---ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897
N S+ + A G I + N +T + + ++ A L FHP+D N++ ++D +
Sbjct: 80 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 139
Query: 898 HIYNVRVDEL 907
++N++ D L
Sbjct: 140 RLWNIQTDTL 149
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 36.6 bits (83), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 786 GVQKLWKWHRNEQNPSGKATASA--VPQHWLPSSG--LLMANDVAGVNLEEAVPCI-ALS 840
GVQ + WH E +P AT + V + S G L+ + V E C
Sbjct: 22 GVQ--FNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYD 79
Query: 841 KNDSYVMSATGGK---ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897
N S+ + A G I + N +T + + ++ A L FHP+D N++ ++D +
Sbjct: 80 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 139
Query: 898 HIYNVRVDEL 907
++N++ D L
Sbjct: 140 RLWNIQTDTL 149
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 36.6 bits (83), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 786 GVQKLWKWHRNEQNPSGKATASA--VPQHWLPSSG--LLMANDVAGVNLEEAVPCI-ALS 840
GVQ + WH E +P AT + V + S G L+ + V E C
Sbjct: 59 GVQ--FNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYD 116
Query: 841 KNDSYVMSATGGK---ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897
N S+ + A G I + N +T + + ++ A L FHP+D N++ ++D +
Sbjct: 117 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 176
Query: 898 HIYNVRVDEL 907
++N++ D L
Sbjct: 177 RLWNIQTDTL 186
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 36.6 bits (83), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 80/208 (38%), Gaps = 43/208 (20%)
Query: 387 IWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ 446
+W+ + S+ A D V+ V WS DG+++ V L+ +Y LR +
Sbjct: 117 VWNADSGSVSALAET--DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG 174
Query: 447 IDAHVGAV------------------NDL------------------AFAYPNKLLCVVT 470
A VG + +D+ A+ + L + +
Sbjct: 175 HQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLAS 234
Query: 471 CGDDKLIKVWEL-SGRKLFNFEGHEAPVYSI--CPHHKENIQFIFSTAIDGKIKAWLYDT 527
G+D ++++W+ S F H A V ++ CP + N+ +D +I W T
Sbjct: 235 GGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP-WQSNLLATGGGTMDKQIHFWNAAT 293
Query: 528 MGSRVDYDAPGHWCTTMLYSADGSRLFS 555
G+RV+ G T++++S + S
Sbjct: 294 -GARVNTVDAGSQVTSLIWSPHSKEIMS 320
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 17/165 (10%)
Query: 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA-YPNKLLC 467
V +AW DG + +++Q++ S + + ++ + H AV +A+ + + LL
Sbjct: 220 VCGLAWRSDGLQLASGGNDNVVQIWDARSS--IPKFTKTN-HNAAVKAVAWCPWQSNLLA 276
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSI--CPHHKENIQFIFSTAI--DGKIKAW 523
DK I W + N + V S+ PH KE I ST D + W
Sbjct: 277 TGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKE----IMSTHGFPDNNLSIW 332
Query: 524 LYDTMGSRVDYDAPGHWCTTMLYSA---DGSRLFSCGTSKDGDSF 565
Y + G D P H T +LYSA DG R+ S S + F
Sbjct: 333 SYSSSGLTKQVDIPAH-DTRVLYSALSPDG-RILSTAASDENLKF 375
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 786 GVQKLWKWHRNEQNPSGKATASA--VPQHWLPSSG--LLMANDVAGVNLEEAVPCI-ALS 840
GVQ + WH E +P AT + V + S G L+ + V E C
Sbjct: 23 GVQ--FNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYD 80
Query: 841 KNDSYVMSATGGK---ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897
N S+ + A G I + N +T + + ++ A L FHP+D N++ ++D +
Sbjct: 81 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 140
Query: 898 HIYNVRVDEL 907
++N++ D L
Sbjct: 141 RLWNIQTDTL 150
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 786 GVQKLWKWHRNEQNPSGKATASA--VPQHWLPSSG--LLMANDVAGVNLEEAVPCI-ALS 840
GVQ + WH E +P AT + V + S G L+ + V E C
Sbjct: 18 GVQ--FNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYD 75
Query: 841 KNDSYVMSATGGK---ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897
N S+ + A G I + N +T + + ++ A L FHP+D N++ ++D +
Sbjct: 76 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 135
Query: 898 HIYNVRVDEL 907
++N++ D L
Sbjct: 136 RLWNIQTDTL 145
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC 471
+A+SPDG Y+ +I ++ A L ++ H + L F+ ++LL VT
Sbjct: 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLH---TLEGHAMPIRSLTFSPDSQLL--VTA 224
Query: 472 GDDKLIKVWELSGRKLFN-FEGHEAPVYSI--CP 502
DD IK++++ L GH + V ++ CP
Sbjct: 225 SDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 15/213 (7%)
Query: 446 QIDAHVGAVNDLAFAYPNK--LLCVVTCGDDKLIKVWELSGRKL---FNFEGHEAPVYSI 500
Q AH A+ +A+ K VVT D L+KVW+ +L ++ EGH+ V S+
Sbjct: 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSV 86
Query: 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560
H + S+++D I+ W + DA T+ +S D L +
Sbjct: 87 DISH--TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVG 144
Query: 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620
+ F VE + E ++ R K + + + + D I +D+ +L
Sbjct: 145 KVNIFGVESGKKEYSLDT-----RGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLL 199
Query: 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653
+ EG + L FS + LL VT +D+G+
Sbjct: 200 HTL--EGHAMPIRSLTFSPDSQLL-VTASDDGY 229
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 11/119 (9%)
Query: 535 DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD 594
DA H C +S DG R+ SCG K F E E IK + F
Sbjct: 616 DAVYHAC----FSQDGQRIASCGADKTLQVFKAETGEKLLDIKA-----HEDEVLCCAFS 666
Query: 595 TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653
+ ++ D ++K WD ++ + D N F+ + N L + T N F
Sbjct: 667 SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNC--CHFTNKSNHLLLATGSNDF 723
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 831 EEAVPCIALSKNDSYVMSATGG-KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN-II 888
E+ V C A S +DSY+ + + K+ +++ T K++ T+ F + N+ ++
Sbjct: 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 716
Query: 889 AIGTEDSTIHIYNVRVDE 906
A G+ D + ++++ E
Sbjct: 717 ATGSNDFFLKLWDLNQKE 734
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 8/156 (5%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+V +S DG + +Q++ L I AH V AF+ +
Sbjct: 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD---IKAHEDEVLCCAFSSDDSY-- 671
Query: 468 VVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
+ TC DK +K+W+ +G+ + ++ H V +K N + + + D +K W +
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562
R + +S D L SC S DG
Sbjct: 732 QKECRNTMFGHTNSVNHCRFSPDDELLASC--SADG 765
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDR 379
V S+++HP+H T + VGS G+I LW+ ++++
Sbjct: 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK 108
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDR 379
V S+++HP+H T + VGS G+I LW+ ++++
Sbjct: 75 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK 107
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 11/119 (9%)
Query: 535 DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD 594
DA H C +S DG R+ SCG K F E E IK + F
Sbjct: 623 DAVYHAC----FSQDGQRIASCGADKTLQVFKAETGEKLLDIKA-----HEDEVLCCAFS 673
Query: 595 TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653
+ ++ D ++K WD ++ + D N F+ + N L + T N F
Sbjct: 674 SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNC--CHFTNKSNHLLLATGSNDF 730
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 831 EEAVPCIALSKNDSYVMSATGG-KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN-II 888
E+ V C A S +DSY+ + + K+ +++ T K++ T+ F + N+ ++
Sbjct: 664 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 723
Query: 889 AIGTEDSTIHIYNVRVDE 906
A G+ D + ++++ E
Sbjct: 724 ATGSNDFFLKLWDLNQKE 741
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+V +S DG + +Q++ L I AH V AF+ +
Sbjct: 624 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD---IKAHEDEVLCCAFSSDDSY-- 678
Query: 468 VVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523
+ TC DK +K+W+ +G+ + ++ H V +K N + + + D +K W
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 735
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 89/216 (41%), Gaps = 22/216 (10%)
Query: 454 VNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSICPHHKENIQFIF 512
+ + F+ K L T +D+LI++W++ RK+ +GHE +YS+ + + +
Sbjct: 126 IRSVCFSPDGKFL--ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL--DYFPSGDKLV 181
Query: 513 STAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK-----DGDS-FL 566
S + D ++ W T + T + DG + + + D ++ FL
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 241
Query: 567 VEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626
VE +SE + G + VV F ++ D +K W++ N N ++
Sbjct: 242 VERLDSE---NESGTGHKDSVYSVV-FTRDGQSVVSGSLDRSVKLWNLQNAN----NKSD 293
Query: 627 GGLPNLPRLRFSKEGN---LLAVTTADNGFKILANA 659
PN + G+ +L+V T N IL+ +
Sbjct: 294 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 329
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 100/237 (42%), Gaps = 42/237 (17%)
Query: 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDL----AFAYPNK 464
+ V +SPDG ++ LI+++ D+ + G D+ F +K
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIW------DIENRKIVMILQGHEQDIYSLDYFPSGDK 179
Query: 465 LLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524
L V+ D+ +++W+L + E V ++ + ++I + ++D ++ W
Sbjct: 180 L---VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWD 235
Query: 525 YDT--MGSRVDYD---APGHWCT--TMLYSADGSRLFSCGTSKDGDSFLVEWN------- 570
+T + R+D + GH + +++++ DG + S D + WN
Sbjct: 236 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQNANNK 291
Query: 571 -----ESEGTIKRTYAGFRKKSNGVVQFDTTQN--HFLAVGEDSQIKFWDMDNVNIL 620
+ GT + TY G + + V+ TTQN + L+ +D + FWD + N L
Sbjct: 292 SDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 345
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 21/181 (11%)
Query: 439 NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVY 498
N L + H G+V L Y ++ ++T D ++VW+++ ++ N H
Sbjct: 161 NTLECKRILTGHTGSV--LCLQYDERV--IITGSSDSTVRVWDVNTGEMLNTLIHHCEAV 216
Query: 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----GHWCTTMLYSADGSRLF 554
H + N + + + D I W M S D GH + D +
Sbjct: 217 ---LHLRFNNGMMVTCSKDRSIAVW---DMASPTDITLRRVLVGHRAAVNVVDFDDKYI- 269
Query: 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614
S GD + WN S RT G ++ G+ ++ D+ I+ WD+
Sbjct: 270 ---VSASGDRTIKVWNTSTCEFVRTLNGHKR---GIACLQYRDRLVVSGSSDNTIRLWDI 323
Query: 615 D 615
+
Sbjct: 324 E 324
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 21/169 (12%)
Query: 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE----GHEAPVYSICPHHK 505
H AV L + N ++ VTC D+ I VW+++ GH A V +
Sbjct: 212 HCEAV--LHLRFNNGMM--VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV----D 263
Query: 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565
+ ++I S + D IK W T + + Y RL G+S D+
Sbjct: 264 FDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSS---DNT 317
Query: 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614
+ W+ G R G + ++FD + ++ D +IK WD+
Sbjct: 318 IRLWDIECGACLRVLEGHEELVR-CIRFDNKR--IVSGAYDGKIKVWDL 363
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQ 509
H G V D+ ++ + +C DK K+W+LS + H+APV +I N
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASC--DKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYS 142
Query: 510 FIFSTAIDGKIKAW 523
+ + + D +K W
Sbjct: 143 CVMTGSWDKTLKFW 156
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402
V + FHP H TL VG S+G + W+ R +L + ++AC +IF
Sbjct: 276 VNGIAFHPVHGTLATVG-SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIF 330
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 12/138 (8%)
Query: 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL--SGRKLF-NFEGHEAPVYSICPHHK 505
+H ++D Y L TC D+ +K++++ G+ L + GHE PV+ + H
Sbjct: 11 SHEDMIHDAQMDYYGTRL--ATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHP 68
Query: 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-----DGSRLFSCGTSK 560
+ S + D K+ W + ++ GH + + S D + +CG+S
Sbjct: 69 MYGNILASCSYDRKVIIWREENGTWEKSHEHAGH--DSSVNSVCWAPHDYGLILACGSSD 126
Query: 561 DGDSFLVEWNESEGTIKR 578
S L E + +K+
Sbjct: 127 GAISLLTYTGEGQWEVKK 144
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 440 DLRQHSQI-----DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW-ELSG--RKLFNFE 491
D+R QI H G V +A+A+P + +C D+ + +W E +G K
Sbjct: 41 DVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHA 100
Query: 492 GHEAPVYSIC--PH 503
GH++ V S+C PH
Sbjct: 101 GHDSSVNSVCWAPH 114
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 469 VTCGDDKLIKVWELSGR---KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLY 525
V+ G D +KVW+LS + K +N E + CP K+ I S DG+I W
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP-GKDTI--FLSCGEDGRILLW-- 209
Query: 526 DTM----GSRVDYDAPGHWCTTMLYSADGSRLFSCG 557
DT +R+D+ A T++ + + F+CG
Sbjct: 210 DTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 19/122 (15%)
Query: 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419
+LV S +G + LWE+ ++ L+ F ++ + S+F D +VS
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHD--DIVKTLSVFSDGTQAVSG-------- 157
Query: 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479
G F+ ++++ + L+ + +AH VN +A A P K ++CG+D I +
Sbjct: 158 --GKDFS---VKVWDLSQKAVLKSY---NAHSSEVNCVA-ACPGKDTIFLSCGEDGRILL 208
Query: 480 WE 481
W+
Sbjct: 209 WD 210
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 553 LFSCGTS--KDGDSFLVE-WNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609
+FS GT G F V+ W+ S+ + ++Y + N V FL+ GED +I
Sbjct: 147 VFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRI 206
Query: 610 KFWD 613
WD
Sbjct: 207 LLWD 210
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 837 IALSKNDSYVMSATGG-KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895
+ALS N ++ +SA+ + L+N+ + F+ +AF P DN I G D+
Sbjct: 73 VALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSP-DNRQIVSGGRDN 131
Query: 896 TIHIYNVR 903
+ ++NV+
Sbjct: 132 ALRVWNVK 139
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 385 FKIWDM--AACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442
++W++ C F KDV VA+SPD + + +++++ G +
Sbjct: 91 LRLWNLQNGQCQYKFLGHT-KDVL----SVAFSPDNRQIVSGGRDNALRVWNVKG--ECM 143
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSI 500
AH V+ + F+ +V+ G D L+KVW+L +GR + + +GH V S+
Sbjct: 144 HTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSV 202
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 100/250 (40%), Gaps = 45/250 (18%)
Query: 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402
Q + S+DF PS ++ GS + + ++E PFK S F
Sbjct: 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFE--------GPPFKF-----------KSTF 186
Query: 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID------AHVGAVND 456
+ V V ++PDG+ I LY+ G + + D AH G+V
Sbjct: 187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN--GVDGTKTGVFEDDSLKNVAHSGSVFG 244
Query: 457 LAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENI----QFIF 512
L ++ P+ + + DK IK+W ++ K+ PV + + I Q +
Sbjct: 245 LTWS-PDGTK-IASASADKTIKIWNVATLKVEK----TIPVGTRIEDQQLGIIWTKQALV 298
Query: 513 STAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
S + +G I ++ +GS +D GH T + SADG LFS D + + W+
Sbjct: 299 SISANGFIN-FVNPELGS-IDQVRYGHNKAITALSSSADGKTLFSA----DAEGHINSWD 352
Query: 571 ESEGTIKRTY 580
S G R +
Sbjct: 353 ISTGISNRVF 362
>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase
Length = 204
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 30/150 (20%)
Query: 11 LILQFLEE--EKFKESV-----HKLEKESG----FFFNMKYFEEKVQAGDWDEVEKYLSG 59
LI + L E +F+ S+ +K EKE+ +F + FE K++ G + E +KY +
Sbjct: 28 LIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANN 87
Query: 60 FTKVDDNRYSMKI------FFE--IRKQKYL-EALDRQD------KAKAVDILVNDLKVF 104
F + Y + + FE I K L E+ QD K ++DIL+ LK
Sbjct: 88 FYGTLKSEYDLAVGEGKICLFEXNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNR 147
Query: 105 STFNEELFKEITQLLTLSNFRENEQLSKYG 134
+T E + Q LT RE ++ K G
Sbjct: 148 NTEKPEEINKRXQELT----REXDEADKVG 173
>pdb|3VH0|A Chain A, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|B Chain B, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|C Chain C, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|D Chain D, Crystal Structure Of E. Coli Ynce Complexed With Dna
Length = 353
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 11/60 (18%)
Query: 840 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899
++N++YV GK+S+ + ++KV+ TF +P HP N +A+ + T+++
Sbjct: 282 ARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT--------HP---NSLALSADGKTLYV 330
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 461 YPNKLLCVVTCGDDKLIKVWELSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDG 518
+PN+ V T G D ++ +W++ + + HEA ++ + H N + +F+ + DG
Sbjct: 245 HPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEV-HFHPSNPEHLFTCSEDG 303
Query: 519 KIKAW 523
+ W
Sbjct: 304 SLWHW 308
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 53/289 (18%), Positives = 101/289 (34%), Gaps = 75/289 (25%)
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKI-WDMAACSLPFQASIFKDVPISVSRVAWSPD 417
LLL S +G++ +W+ +++ + P + W M A++P
Sbjct: 69 LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT--------------------CAYAPS 108
Query: 418 GNYVGVAFTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476
GNYV ++ +Y+ ++R ++ H G ++ F N+ +VT D
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTT 165
Query: 477 IKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535
+W++ +G++ F GH V S+ + + S A D K W
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLW------------ 211
Query: 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595
+ EG ++T+ G N + F
Sbjct: 212 ----------------------------------DVREGMCRQTFTGHESDINAICFF-P 236
Query: 596 TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
N F +D+ + +D+ L + + + + + FSK G LL
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 53/289 (18%), Positives = 101/289 (34%), Gaps = 75/289 (25%)
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKI-WDMAACSLPFQASIFKDVPISVSRVAWSPD 417
LLL S +G++ +W+ +++ + P + W M A++P
Sbjct: 69 LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT--------------------CAYAPS 108
Query: 418 GNYVGVAFTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476
GNYV ++ +Y+ ++R ++ H G ++ F N+ +VT D
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTT 165
Query: 477 IKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535
+W++ +G++ F GH V S+ + + S A D K W
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLW------------ 211
Query: 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595
+ EG ++T+ G N + F
Sbjct: 212 ----------------------------------DVREGMCRQTFTGHESDINAICFF-P 236
Query: 596 TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
N F +D+ + +D+ L + + + + + FSK G LL
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
>pdb|3VGZ|A Chain A, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|B Chain B, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|C Chain C, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|D Chain D, Crystal Structure Of E. Coli Ynce
Length = 353
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 11/60 (18%)
Query: 840 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899
++N++YV GK+S+ + ++KV+ TF +P HP N +A+ + T+++
Sbjct: 282 ARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT--------HP---NSLALSADGKTLYV 330
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSI 500
H+ + H+ V+D F ++C +D LIK+ + +G L +EGHE+ VY I
Sbjct: 183 HNDVVRHLAVVDDGHF---------ISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCI 231
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 3/130 (2%)
Query: 312 APSAEEVTYSSSRHQTWSLDDLPRTVAV--SLHQGSTVISMDFHPSHQTLLLVGSSNGEI 369
A + E T + S DDL V + + + ++S ++P +++L G N
Sbjct: 11 ASTVERETQEDDTNSIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVA 70
Query: 370 TLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS-VSRVAWSPDGNYVGVAFTKH 428
L + D+ K +K+ +A PF S + V+ +AWS DGN +
Sbjct: 71 RLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENG 130
Query: 429 LIQLYSYAGS 438
++L++ G+
Sbjct: 131 ELRLWNKTGA 140
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 18/20 (90%)
Query: 43 EKVQAGDWDEVEKYLSGFTK 62
EKV++GD+DE++KY++ F K
Sbjct: 273 EKVKSGDFDEIKKYVNTFMK 292
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 52/289 (17%), Positives = 101/289 (34%), Gaps = 75/289 (25%)
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKI-WDMAACSLPFQASIFKDVPISVSRVAWSPD 417
LL+ S +G++ +W+ +++ + P + W M A++P
Sbjct: 69 LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT--------------------CAYAPS 108
Query: 418 GNYVGVAFTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476
GNYV ++ +Y+ ++R ++ H G ++ F N+ +VT D
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTT 165
Query: 477 IKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535
+W++ +G++ F GH V S+ + + S A D K W
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLW------------ 211
Query: 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595
+ EG ++T+ G N + F
Sbjct: 212 ----------------------------------DVREGMCRQTFTGHESDINAICFF-P 236
Query: 596 TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
N F +D+ + +D+ L + + + + + FSK G LL
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 52/289 (17%), Positives = 101/289 (34%), Gaps = 75/289 (25%)
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKI-WDMAACSLPFQASIFKDVPISVSRVAWSPD 417
LL+ S +G++ +W+ +++ + P + W M A++P
Sbjct: 80 LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT--------------------CAYAPS 119
Query: 418 GNYVGVAFTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476
GNYV ++ +Y+ ++R ++ H G ++ F N+ +VT D
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTT 176
Query: 477 IKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535
+W++ +G++ F GH V S+ + + S A D K W
Sbjct: 177 CALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLW------------ 222
Query: 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595
+ EG ++T+ G N + F
Sbjct: 223 ----------------------------------DVREGMCRQTFTGHESDINAICFF-P 247
Query: 596 TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
N F +D+ + +D+ L + + + + + FSK G LL
Sbjct: 248 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 296
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 52/289 (17%), Positives = 101/289 (34%), Gaps = 75/289 (25%)
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKI-WDMAACSLPFQASIFKDVPISVSRVAWSPD 417
LL+ S +G++ +W+ +++ + P + W M A++P
Sbjct: 69 LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT--------------------CAYAPS 108
Query: 418 GNYVGVAFTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476
GNYV ++ +Y+ ++R ++ H G ++ F N+ +VT D
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTT 165
Query: 477 IKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535
+W++ +G++ F GH V S+ + + S A D K W
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLW------------ 211
Query: 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595
+ EG ++T+ G N + F
Sbjct: 212 ----------------------------------DVREGMCRQTFTGHESDINAICFF-P 236
Query: 596 TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
N F +D+ + +D+ L + + + + + FSK G LL
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638
T G K+ V T QN L+ G D+ I WD+ + + + + + +S
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALR 677
++G L+ + D +++ G ++ A ++ P E R
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKG--TVVAEKDRPHEGTR 222
>pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a
pdb|2Z3Z|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Complexd
With An Inhibitor
Length = 706
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD--GSRLF 554
N QFI+ + DG +LYDT G + G W T D G+RL+
Sbjct: 322 NNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLY 371
>pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl
Aminopeptidase Complexed With Substrate
Length = 706
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD--GSRLF 554
N QFI+ + DG +LYDT G + G W T D G+RL+
Sbjct: 322 NNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLY 371
>pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase
From Porphyromonas Gingivalis
pdb|2EEP|A Chain A, Prolyl Tripeptidyl Aminopeptidase Complexed With An
Inhibitor
Length = 706
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD--GSRLF 554
N QFI+ + DG +LYDT G + G W T D G+RL+
Sbjct: 322 NNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLY 371
>pdb|3GBS|A Chain A, Crystal Structure Of Aspergillus Oryzae Cutinase
Length = 197
Score = 30.0 bits (66), Expect = 6.8, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Query: 528 MGSRVDYDAPGHWC---TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT------IKR 578
+G R D P + T+ A+ LF SK D+ +V S+GT IKR
Sbjct: 63 VGPRYTADLPSNALPEGTSQAAIAEAQGLFEQAVSKCPDTQIVAGGYSQGTAVMNGAIKR 122
Query: 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619
A + K GVV F T+N E QI + D V +
Sbjct: 123 LSADVQDKIKGVVLFGYTRN----AQERGQIANFPKDKVKV 159
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404
ST++S+D+HP++ LL G ++ + + +RD +W LPF ++ +
Sbjct: 147 STILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVW---GSRLPFN-TVCAE 201
Query: 405 VPIS--VSRVAWSPDGNYVGVAFTKH 428
P V V +SP GN +A+ H
Sbjct: 202 YPSGGWVHAVGFSPSGN--ALAYAGH 225
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,347,156
Number of Sequences: 62578
Number of extensions: 1336257
Number of successful extensions: 3433
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 3051
Number of HSP's gapped (non-prelim): 361
length of query: 1096
length of database: 14,973,337
effective HSP length: 109
effective length of query: 987
effective length of database: 8,152,335
effective search space: 8046354645
effective search space used: 8046354645
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)