Query 001343
Match_columns 1096
No_of_seqs 959 out of 4916
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 22:20:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 4.5E-70 9.8E-75 539.1 36.2 489 5-660 17-514 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 2.1E-63 4.5E-68 475.8 33.4 486 5-657 7-507 (508)
3 KOG0319 WD40-repeat-containing 100.0 9.2E-58 2E-62 485.6 47.9 577 350-1063 25-622 (775)
4 KOG0319 WD40-repeat-containing 100.0 3.2E-56 7E-61 473.8 46.7 564 327-1006 42-620 (775)
5 KOG0318 WD40 repeat stress pro 100.0 1.2E-50 2.6E-55 414.3 62.0 561 314-1060 29-602 (603)
6 KOG0291 WD40-repeat-containing 100.0 1.1E-47 2.4E-52 408.5 59.8 582 315-1009 26-713 (893)
7 KOG0306 WD40-repeat-containing 100.0 1.9E-48 4.1E-53 414.2 50.5 570 354-1062 32-666 (888)
8 KOG0291 WD40-repeat-containing 100.0 1.1E-46 2.5E-51 400.9 60.3 536 348-1011 18-618 (893)
9 KOG0306 WD40-repeat-containing 100.0 4.1E-48 8.9E-53 411.6 47.3 568 318-1008 37-667 (888)
10 KOG0271 Notchless-like WD40 re 100.0 3.4E-50 7.3E-55 394.6 28.7 311 342-692 113-466 (480)
11 KOG0318 WD40 repeat stress pro 100.0 4.3E-45 9.4E-50 373.7 56.3 530 350-1065 24-565 (603)
12 KOG0271 Notchless-like WD40 re 100.0 1.2E-48 2.6E-53 383.7 27.5 364 401-958 110-479 (480)
13 KOG1408 WD40 repeat protein [F 100.0 6.3E-41 1.4E-45 353.6 43.7 570 343-1061 77-714 (1080)
14 KOG0263 Transcription initiati 100.0 2.5E-41 5.5E-46 365.4 36.2 275 329-616 362-650 (707)
15 KOG0272 U4/U6 small nuclear ri 100.0 2.4E-41 5.3E-46 337.6 23.5 283 341-657 172-458 (459)
16 KOG1063 RNA polymerase II elon 100.0 2.5E-37 5.3E-42 327.3 47.7 645 316-1060 26-763 (764)
17 KOG0273 Beta-transducin family 100.0 1.3E-38 2.8E-43 322.3 36.1 303 333-661 167-484 (524)
18 KOG0276 Vesicle coat complex C 100.0 1.1E-37 2.3E-42 325.4 42.0 474 343-960 12-490 (794)
19 KOG0272 U4/U6 small nuclear ri 100.0 6.7E-40 1.5E-44 327.3 23.7 254 404-670 173-428 (459)
20 KOG0286 G-protein beta subunit 100.0 4.2E-38 9E-43 299.5 33.5 290 338-657 48-343 (343)
21 KOG0279 G protein beta subunit 100.0 2.8E-38 6.1E-43 299.0 31.7 295 339-659 9-313 (315)
22 KOG1539 WD repeat protein [Gen 100.0 8.6E-36 1.9E-40 322.2 54.3 572 350-1061 39-649 (910)
23 KOG0286 G-protein beta subunit 100.0 1.8E-36 3.9E-41 288.3 32.2 248 401-661 50-305 (343)
24 KOG1539 WD repeat protein [Gen 100.0 9.6E-35 2.1E-39 314.1 49.3 563 342-1005 74-648 (910)
25 KOG1063 RNA polymerase II elon 100.0 2.4E-35 5.3E-40 312.3 43.0 541 350-1060 20-699 (764)
26 KOG0276 Vesicle coat complex C 100.0 7.6E-35 1.6E-39 304.2 43.5 468 402-997 9-483 (794)
27 KOG1408 WD40 repeat protein [F 100.0 2.1E-35 4.6E-40 312.0 38.8 557 314-1006 80-714 (1080)
28 KOG0315 G-protein beta subunit 100.0 4.4E-36 9.4E-41 278.8 29.0 281 359-673 12-301 (311)
29 KOG0292 Vesicle coat complex C 100.0 5.6E-34 1.2E-38 308.7 47.0 559 402-1063 5-597 (1202)
30 KOG0295 WD40 repeat-containing 100.0 5.2E-36 1.1E-40 293.9 26.3 288 338-658 102-405 (406)
31 KOG0284 Polyadenylation factor 100.0 7.5E-37 1.6E-41 303.9 20.1 336 289-659 29-380 (464)
32 KOG2106 Uncharacterized conser 100.0 2.7E-32 5.9E-37 278.2 47.1 525 411-1060 70-626 (626)
33 KOG0296 Angio-associated migra 100.0 4.7E-34 1E-38 280.5 32.2 289 338-661 57-358 (399)
34 KOG0292 Vesicle coat complex C 100.0 1.5E-33 3.3E-38 305.4 39.2 472 343-891 8-546 (1202)
35 KOG0285 Pleiotropic regulator 100.0 1.2E-34 2.5E-39 283.0 26.8 293 335-661 141-441 (460)
36 KOG0315 G-protein beta subunit 100.0 1.1E-33 2.5E-38 262.8 31.5 294 508-938 10-307 (311)
37 KOG0265 U5 snRNP-specific prot 100.0 3.6E-34 7.7E-39 274.1 27.9 287 338-656 41-335 (338)
38 KOG0273 Beta-transducin family 100.0 6E-34 1.3E-38 288.5 30.8 280 343-659 234-523 (524)
39 KOG0279 G protein beta subunit 100.0 1.1E-33 2.4E-38 267.9 30.1 293 400-744 9-313 (315)
40 KOG0645 WD40 repeat protein [G 100.0 5.4E-33 1.2E-37 262.1 31.9 289 338-659 7-311 (312)
41 KOG0316 Conserved WD40 repeat- 100.0 1.4E-33 3.1E-38 259.8 25.7 287 334-657 6-297 (307)
42 KOG0296 Angio-associated migra 100.0 9E-33 1.9E-37 271.5 32.9 328 402-860 60-398 (399)
43 KOG0285 Pleiotropic regulator 100.0 1.4E-33 2.9E-38 275.5 24.7 292 400-745 145-440 (460)
44 KOG0266 WD40 repeat-containing 100.0 1.1E-32 2.3E-37 312.5 32.8 284 343-658 158-453 (456)
45 KOG0295 WD40 repeat-containing 100.0 3.5E-33 7.6E-38 274.1 24.8 271 402-692 104-391 (406)
46 KOG0265 U5 snRNP-specific prot 100.0 2.7E-32 5.9E-37 261.2 29.0 248 401-659 42-296 (338)
47 KOG0281 Beta-TrCP (transducin 100.0 4E-34 8.6E-39 277.7 16.0 274 343-662 196-480 (499)
48 KOG2106 Uncharacterized conser 100.0 5.5E-30 1.2E-34 261.5 46.5 500 338-1004 98-625 (626)
49 KOG2048 WD40 repeat protein [G 100.0 2.8E-29 6.1E-34 266.5 52.0 505 405-1008 24-551 (691)
50 KOG2048 WD40 repeat protein [G 100.0 3.6E-29 7.8E-34 265.7 50.2 543 343-960 24-601 (691)
51 KOG0263 Transcription initiati 100.0 1E-32 2.3E-37 298.9 22.7 245 406-661 378-651 (707)
52 KOG0282 mRNA splicing factor [ 100.0 2.4E-33 5.3E-38 285.6 16.6 292 333-657 202-503 (503)
53 KOG0284 Polyadenylation factor 100.0 7.9E-33 1.7E-37 275.3 18.8 241 405-659 95-337 (464)
54 cd00200 WD40 WD40 domain, foun 100.0 2.2E-30 4.9E-35 282.1 36.6 282 342-657 7-289 (289)
55 KOG0645 WD40 repeat protein [G 100.0 3.5E-30 7.5E-35 243.2 30.2 291 401-744 9-311 (312)
56 KOG0293 WD40 repeat-containing 100.0 1.6E-31 3.4E-36 266.0 21.7 291 401-744 219-513 (519)
57 PLN00181 protein SPA1-RELATED; 100.0 3.1E-29 6.8E-34 307.5 40.6 291 342-658 481-792 (793)
58 KOG0266 WD40 repeat-containing 100.0 9.1E-30 2E-34 288.6 32.6 274 405-692 158-437 (456)
59 KOG0282 mRNA splicing factor [ 100.0 2.3E-31 5.1E-36 271.2 16.8 290 400-742 208-503 (503)
60 KOG1445 Tumor-specific antigen 100.0 1.2E-28 2.6E-33 257.5 36.3 651 339-1072 73-856 (1012)
61 KOG0281 Beta-TrCP (transducin 100.0 4E-31 8.7E-36 256.9 15.9 230 406-661 197-430 (499)
62 KOG0278 Serine/threonine kinas 100.0 2E-30 4.3E-35 241.2 19.3 286 338-661 8-299 (334)
63 KOG0641 WD40 repeat protein [G 100.0 3.6E-28 7.7E-33 222.4 32.0 312 332-659 20-349 (350)
64 KOG0316 Conserved WD40 repeat- 100.0 2.6E-29 5.6E-34 231.8 24.4 247 399-661 10-259 (307)
65 PLN00181 protein SPA1-RELATED; 100.0 2.5E-28 5.5E-33 299.5 41.3 270 366-661 457-740 (793)
66 cd00200 WD40 WD40 domain, foun 100.0 3.6E-28 7.8E-33 264.7 36.5 246 402-661 5-251 (289)
67 KOG0288 WD40 repeat protein Ti 100.0 3.4E-30 7.4E-35 257.2 18.4 293 331-656 161-458 (459)
68 KOG0313 Microtubule binding pr 100.0 8.9E-29 1.9E-33 244.6 27.0 289 333-658 94-417 (423)
69 KOG0640 mRNA cleavage stimulat 100.0 1.5E-28 3.2E-33 235.8 27.5 309 338-658 106-425 (430)
70 KOG0643 Translation initiation 100.0 8.1E-29 1.8E-33 233.2 23.1 288 338-661 4-319 (327)
71 KOG0310 Conserved WD40 repeat- 100.0 3.5E-28 7.6E-33 248.8 28.0 282 343-658 25-308 (487)
72 KOG0973 Histone transcription 100.0 1.7E-28 3.6E-33 275.9 27.9 305 343-661 12-357 (942)
73 KOG1407 WD40 repeat protein [F 100.0 3.1E-27 6.6E-32 222.0 27.8 274 342-650 18-293 (313)
74 KOG0274 Cdc4 and related F-box 100.0 2E-27 4.3E-32 266.5 30.4 281 342-666 206-488 (537)
75 KOG0278 Serine/threonine kinas 100.0 1.2E-28 2.7E-33 229.3 16.2 284 401-744 9-297 (334)
76 KOG0647 mRNA export protein (c 100.0 4E-27 8.6E-32 226.0 26.5 273 343-648 26-312 (347)
77 KOG0275 Conserved WD40 repeat- 100.0 2.4E-28 5.2E-33 235.3 18.1 288 403-742 210-507 (508)
78 PTZ00421 coronin; Provisional 100.0 2.7E-26 5.9E-31 257.9 37.0 287 343-640 19-314 (493)
79 KOG0313 Microtubule binding pr 100.0 6.9E-27 1.5E-31 231.3 27.9 283 449-903 103-418 (423)
80 KOG0643 Translation initiation 100.0 8.8E-27 1.9E-31 219.5 27.1 233 401-649 5-251 (327)
81 KOG0772 Uncharacterized conser 100.0 2.3E-27 5E-32 243.1 24.3 301 333-657 155-485 (641)
82 KOG0283 WD40 repeat-containing 100.0 1.7E-27 3.7E-32 261.2 25.1 299 342-661 265-578 (712)
83 KOG0277 Peroxisomal targeting 100.0 2.2E-27 4.8E-32 221.9 22.0 283 348-658 12-308 (311)
84 KOG1446 Histone H3 (Lys4) meth 100.0 9.4E-26 2E-30 219.4 33.6 281 343-659 13-303 (311)
85 KOG0640 mRNA cleavage stimulat 100.0 8.1E-27 1.8E-31 223.8 21.8 253 401-661 107-385 (430)
86 KOG0308 Conserved WD40 repeat- 100.0 6.8E-27 1.5E-31 246.7 23.3 292 343-659 20-327 (735)
87 KOG0305 Anaphase promoting com 100.0 3.6E-26 7.9E-31 245.1 29.2 269 317-617 190-463 (484)
88 KOG1407 WD40 repeat protein [F 100.0 7.1E-26 1.5E-30 212.8 26.6 249 400-661 14-263 (313)
89 KOG0305 Anaphase promoting com 99.9 5.4E-26 1.2E-30 243.8 28.1 277 348-661 181-463 (484)
90 KOG0299 U3 snoRNP-associated p 99.9 9.2E-26 2E-30 229.2 27.0 293 342-656 140-453 (479)
91 KOG0289 mRNA splicing factor [ 99.9 1.6E-25 3.4E-30 225.2 28.0 283 345-658 220-505 (506)
92 KOG0301 Phospholipase A2-activ 99.9 7.5E-26 1.6E-30 240.9 27.1 283 336-661 5-290 (745)
93 KOG0772 Uncharacterized conser 99.9 1.1E-25 2.3E-30 231.0 25.7 301 531-900 160-484 (641)
94 PTZ00420 coronin; Provisional 99.9 1.6E-24 3.6E-29 243.7 36.4 255 363-641 50-318 (568)
95 PTZ00421 coronin; Provisional 99.9 9.5E-25 2E-29 245.4 33.7 248 406-661 20-292 (493)
96 KOG1446 Histone H3 (Lys4) meth 99.9 4.1E-24 8.8E-29 208.1 33.1 274 401-692 9-290 (311)
97 KOG0299 U3 snoRNP-associated p 99.9 2E-25 4.2E-30 226.9 24.9 281 402-696 138-444 (479)
98 KOG0308 Conserved WD40 repeat- 99.9 5.6E-26 1.2E-30 239.9 21.2 241 411-661 29-287 (735)
99 KOG0277 Peroxisomal targeting 99.9 1.4E-25 3E-30 209.9 20.7 250 336-614 52-308 (311)
100 KOG0288 WD40 repeat protein Ti 99.9 3.5E-26 7.7E-31 228.7 17.6 246 402-661 171-419 (459)
101 KOG0268 Sof1-like rRNA process 99.9 2E-26 4.4E-31 226.3 15.4 282 342-661 64-347 (433)
102 KOG0300 WD40 repeat-containing 99.9 1.9E-25 4.1E-30 214.9 21.2 295 336-661 139-478 (481)
103 KOG0274 Cdc4 and related F-box 99.9 3.6E-25 7.7E-30 248.5 26.8 255 327-623 232-490 (537)
104 KOG0268 Sof1-like rRNA process 99.9 4.5E-26 9.8E-31 223.9 16.6 241 402-661 62-304 (433)
105 KOG0310 Conserved WD40 repeat- 99.9 5.5E-25 1.2E-29 225.5 24.4 248 335-616 58-310 (487)
106 KOG1445 Tumor-specific antigen 99.9 4.1E-24 8.9E-29 223.9 30.8 214 401-618 74-296 (1012)
107 KOG0647 mRNA export protein (c 99.9 2.8E-24 6E-29 206.6 26.8 277 403-696 24-312 (347)
108 KOG0973 Histone transcription 99.9 1.8E-24 3.8E-29 243.8 29.0 228 402-639 9-275 (942)
109 KOG0294 WD40 repeat-containing 99.9 4.3E-24 9.4E-29 206.5 26.9 242 402-661 39-283 (362)
110 KOG1036 Mitotic spindle checkp 99.9 5.4E-24 1.2E-28 205.9 27.6 267 344-649 13-294 (323)
111 KOG0289 mRNA splicing factor [ 99.9 3.3E-24 7.2E-29 215.7 27.1 238 407-657 220-460 (506)
112 KOG0641 WD40 repeat protein [G 99.9 3.9E-23 8.5E-28 189.5 31.3 251 763-1060 88-349 (350)
113 PTZ00420 coronin; Provisional 99.9 2.2E-23 4.8E-28 234.7 36.3 250 424-689 50-318 (568)
114 KOG1963 WD40 repeat protein [G 99.9 1.5E-22 3.2E-27 223.2 40.4 521 410-1011 20-589 (792)
115 KOG0283 WD40 repeat-containing 99.9 6.5E-25 1.4E-29 241.1 21.6 289 404-744 265-576 (712)
116 KOG1274 WD40 repeat protein [G 99.9 2.7E-21 5.8E-26 213.3 49.0 269 342-648 11-289 (933)
117 KOG1332 Vesicle coat complex C 99.9 1E-24 2.2E-29 203.0 17.7 252 401-659 6-286 (299)
118 KOG2096 WD40 repeat protein [G 99.9 1.2E-23 2.7E-28 203.1 25.2 314 400-859 80-401 (420)
119 KOG0300 WD40 repeat-containing 99.9 4.9E-24 1.1E-28 205.2 22.3 290 402-744 144-476 (481)
120 KOG1963 WD40 repeat protein [G 99.9 2.3E-22 5.1E-27 221.6 36.5 485 348-913 20-592 (792)
121 KOG1273 WD40 repeat protein [G 99.9 2.3E-23 5E-28 201.0 24.8 293 333-660 13-323 (405)
122 KOG2096 WD40 repeat protein [G 99.9 5E-23 1.1E-27 198.9 26.7 304 488-901 80-400 (420)
123 KOG0639 Transducin-like enhanc 99.9 5.5E-24 1.2E-28 217.3 20.7 292 336-658 411-703 (705)
124 KOG0646 WD40 repeat protein [G 99.9 3.3E-23 7.2E-28 211.3 24.1 223 406-640 81-330 (476)
125 KOG0301 Phospholipase A2-activ 99.9 2.1E-23 4.6E-28 222.4 23.3 264 401-692 9-274 (745)
126 KOG1332 Vesicle coat complex C 99.9 1.1E-23 2.4E-28 196.2 18.1 252 342-616 9-287 (299)
127 KOG1036 Mitotic spindle checkp 99.9 3.2E-22 6.9E-27 193.7 27.7 271 405-697 12-294 (323)
128 KOG0264 Nucleosome remodeling 99.9 3.9E-23 8.5E-28 210.7 22.5 263 337-615 117-404 (422)
129 KOG0294 WD40 repeat-containing 99.9 2.1E-22 4.6E-27 194.9 25.9 241 339-617 37-283 (362)
130 KOG4283 Transcription-coupled 99.9 3.9E-22 8.5E-27 190.6 25.4 300 342-658 41-364 (397)
131 KOG2055 WD40 repeat protein [G 99.9 3.1E-22 6.6E-27 203.5 25.3 287 344-659 213-512 (514)
132 KOG0639 Transducin-like enhanc 99.9 2.5E-23 5.3E-28 212.6 17.4 273 723-1059 428-703 (705)
133 KOG1538 Uncharacterized conser 99.9 2.5E-22 5.4E-27 211.9 25.3 274 346-661 14-295 (1081)
134 KOG4328 WD40 protein [Function 99.9 3.6E-22 7.8E-27 202.9 24.9 294 343-659 185-495 (498)
135 KOG1273 WD40 repeat protein [G 99.9 5.9E-22 1.3E-26 191.4 23.0 268 409-692 26-308 (405)
136 KOG0264 Nucleosome remodeling 99.9 3.9E-22 8.5E-27 203.5 22.1 253 402-661 120-406 (422)
137 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.8E-20 3.8E-25 205.6 36.2 275 359-669 3-288 (300)
138 KOG2055 WD40 repeat protein [G 99.9 2.3E-21 5.1E-26 197.2 26.1 288 450-793 212-511 (514)
139 KOG0267 Microtubule severing p 99.9 1.7E-23 3.6E-28 223.9 10.6 253 359-650 6-259 (825)
140 KOG0646 WD40 repeat protein [G 99.9 1.1E-21 2.5E-26 200.2 22.7 300 470-882 12-329 (476)
141 KOG1274 WD40 repeat protein [G 99.9 6.5E-21 1.4E-25 210.3 29.1 267 403-692 10-285 (933)
142 KOG0650 WD40 repeat nucleolar 99.9 3.3E-21 7.1E-26 201.9 25.4 278 331-658 386-679 (733)
143 KOG0321 WD40 repeat-containing 99.9 4.7E-21 1E-25 202.5 23.1 288 350-661 55-393 (720)
144 KOG4283 Transcription-coupled 99.9 1.5E-20 3.4E-25 179.8 23.6 306 491-903 40-365 (397)
145 KOG0269 WD40 repeat-containing 99.9 1.1E-21 2.3E-26 212.0 15.6 247 346-617 89-342 (839)
146 KOG0269 WD40 repeat-containing 99.9 3.6E-21 7.8E-26 208.0 19.6 296 344-661 39-342 (839)
147 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 6.4E-19 1.4E-23 193.2 36.5 274 327-639 15-300 (300)
148 KOG0267 Microtubule severing p 99.9 4.5E-22 9.8E-27 213.0 10.5 232 343-606 27-259 (825)
149 KOG2445 Nuclear pore complex c 99.9 7.3E-20 1.6E-24 176.8 24.6 254 402-659 9-318 (361)
150 KOG1538 Uncharacterized conser 99.9 1.5E-19 3.3E-24 191.1 28.9 277 540-906 14-296 (1081)
151 KOG2445 Nuclear pore complex c 99.9 1.2E-19 2.5E-24 175.4 25.5 253 342-616 11-319 (361)
152 KOG0307 Vesicle coat complex C 99.9 4.8E-21 1E-25 217.1 15.8 295 348-661 10-329 (1049)
153 KOG0270 WD40 repeat-containing 99.9 3.1E-20 6.7E-25 188.5 19.8 252 409-666 176-456 (463)
154 KOG0321 WD40 repeat-containing 99.9 7.6E-20 1.6E-24 193.5 23.5 287 412-745 55-392 (720)
155 KOG1009 Chromatin assembly com 99.8 3.1E-19 6.7E-24 179.2 25.2 303 342-661 11-374 (434)
156 KOG0650 WD40 repeat nucleolar 99.8 2.5E-19 5.3E-24 188.0 23.8 319 576-1002 392-732 (733)
157 KOG1334 WD40 repeat protein [G 99.8 1.3E-20 2.8E-25 193.1 13.4 337 272-661 95-468 (559)
158 KOG1034 Transcriptional repres 99.8 4.4E-19 9.4E-24 173.0 22.7 289 343-659 37-383 (385)
159 COG2319 FOG: WD40 repeat [Gene 99.8 2E-16 4.3E-21 184.2 44.8 368 340-794 61-442 (466)
160 KOG4378 Nuclear protein COP1 [ 99.8 1.3E-18 2.9E-23 178.2 22.1 286 325-641 14-305 (673)
161 KOG4328 WD40 protein [Function 99.8 2.6E-18 5.6E-23 175.1 24.0 305 487-903 179-495 (498)
162 KOG0302 Ribosome Assembly prot 99.8 1.5E-18 3.2E-23 172.4 21.5 266 334-612 141-435 (440)
163 KOG4378 Nuclear protein COP1 [ 99.8 1.6E-18 3.5E-23 177.6 21.8 291 365-689 10-305 (673)
164 KOG0303 Actin-binding protein 99.8 3E-18 6.4E-23 171.2 22.6 248 408-662 29-297 (472)
165 KOG4497 Uncharacterized conser 99.8 3.6E-18 7.9E-23 166.3 22.1 404 411-952 13-424 (447)
166 KOG1912 WD40 repeat protein [G 99.8 1.4E-16 3.1E-21 172.2 36.5 461 343-864 14-555 (1062)
167 KOG0302 Ribosome Assembly prot 99.8 3.1E-18 6.7E-23 170.1 21.7 247 402-656 147-435 (440)
168 KOG0270 WD40 repeat-containing 99.8 1.2E-18 2.6E-23 177.1 19.0 259 346-620 175-454 (463)
169 KOG1524 WD40 repeat-containing 99.8 4.3E-17 9.3E-22 168.8 30.5 229 404-649 12-246 (737)
170 KOG1034 Transcriptional repres 99.8 2.7E-18 5.9E-23 167.5 19.5 280 400-692 32-368 (385)
171 KOG2919 Guanine nucleotide-bin 99.8 8.2E-18 1.8E-22 163.6 22.4 285 347-650 52-361 (406)
172 COG2319 FOG: WD40 repeat [Gene 99.8 1.4E-15 3.1E-20 176.9 45.6 370 402-904 61-443 (466)
173 KOG1524 WD40 repeat-containing 99.8 3.3E-17 7.2E-22 169.7 27.4 269 342-655 12-282 (737)
174 KOG0303 Actin-binding protein 99.8 1.9E-17 4.1E-22 165.5 23.2 234 400-640 75-320 (472)
175 KOG1009 Chromatin assembly com 99.8 3.2E-17 6.9E-22 164.9 24.8 307 728-1063 28-375 (434)
176 KOG2919 Guanine nucleotide-bin 99.8 4.2E-17 9E-22 158.8 23.6 284 587-954 51-363 (406)
177 KOG0642 Cell-cycle nuclear pro 99.8 2.3E-18 5E-23 180.4 16.0 266 340-626 289-572 (577)
178 KOG4227 WD40 repeat protein [G 99.8 2.3E-17 4.9E-22 164.0 21.6 294 341-659 53-387 (609)
179 KOG1912 WD40 repeat protein [G 99.8 9.9E-16 2.1E-20 165.8 35.1 493 407-984 16-572 (1062)
180 KOG4497 Uncharacterized conser 99.8 3.4E-17 7.3E-22 159.6 21.1 382 543-1053 13-425 (447)
181 KOG0307 Vesicle coat complex C 99.8 3E-18 6.5E-23 194.7 16.2 261 337-618 57-330 (1049)
182 KOG0644 Uncharacterized conser 99.8 2E-18 4.3E-23 187.8 12.8 278 340-661 186-470 (1113)
183 KOG0649 WD40 repeat protein [G 99.8 5.1E-16 1.1E-20 145.1 25.5 280 346-656 12-313 (325)
184 KOG0322 G-protein beta subunit 99.8 1.6E-17 3.5E-22 157.2 14.8 283 338-658 7-322 (323)
185 KOG1188 WD40 repeat protein [G 99.7 7.7E-17 1.7E-21 158.6 18.7 271 359-659 42-346 (376)
186 KOG0642 Cell-cycle nuclear pro 99.7 1.2E-17 2.6E-22 175.1 13.6 250 401-661 289-563 (577)
187 KOG1188 WD40 repeat protein [G 99.7 1.2E-16 2.7E-21 157.2 17.8 288 467-793 42-345 (376)
188 KOG1007 WD repeat protein TSSC 99.7 5.8E-16 1.3E-20 148.5 20.4 259 290-571 40-360 (370)
189 KOG0644 Uncharacterized conser 99.7 1.2E-17 2.5E-22 181.9 9.8 266 402-697 186-458 (1113)
190 KOG1587 Cytoplasmic dynein int 99.7 1.4E-15 2.9E-20 169.6 26.3 269 327-616 226-517 (555)
191 KOG1007 WD repeat protein TSSC 99.7 1.5E-15 3.2E-20 145.8 22.3 230 420-660 28-290 (370)
192 KOG2110 Uncharacterized conser 99.7 3.7E-14 8.1E-19 141.6 32.9 239 406-661 5-250 (391)
193 KOG1523 Actin-related protein 99.7 2.3E-15 4.9E-20 147.1 23.1 227 343-595 9-259 (361)
194 KOG0322 G-protein beta subunit 99.7 3.1E-16 6.8E-21 148.5 16.1 309 530-902 6-322 (323)
195 KOG1517 Guanine nucleotide bin 99.7 1.9E-15 4.1E-20 169.2 24.9 307 449-905 1062-1383(1387)
196 KOG0290 Conserved WD40 repeat- 99.7 5.7E-15 1.2E-19 142.0 24.6 284 338-650 38-357 (364)
197 KOG4227 WD40 repeat protein [G 99.7 1.6E-15 3.4E-20 151.1 20.6 309 533-914 51-395 (609)
198 KOG1310 WD40 repeat protein [G 99.7 3.9E-15 8.5E-20 155.0 24.0 165 401-572 45-231 (758)
199 PRK11028 6-phosphogluconolacto 99.7 3.7E-14 7.9E-19 156.5 33.5 271 359-659 4-304 (330)
200 PRK11028 6-phosphogluconolacto 99.7 4.7E-14 1E-18 155.6 32.9 261 327-615 16-304 (330)
201 KOG0649 WD40 repeat protein [G 99.7 1.2E-14 2.6E-19 136.1 22.8 252 721-1005 17-274 (325)
202 KOG1587 Cytoplasmic dynein int 99.7 1.1E-14 2.4E-19 162.4 25.8 268 367-661 222-518 (555)
203 KOG1517 Guanine nucleotide bin 99.7 1E-14 2.2E-19 163.5 24.9 283 402-691 1060-1365(1387)
204 KOG0771 Prolactin regulatory e 99.7 1.2E-15 2.7E-20 155.2 15.7 196 835-1063 148-357 (398)
205 KOG1240 Protein kinase contain 99.7 2.3E-14 4.9E-19 163.5 27.5 254 402-661 1044-1336(1431)
206 KOG2041 WD40 repeat protein [G 99.7 7.1E-13 1.5E-17 142.4 37.0 543 343-1005 13-619 (1189)
207 KOG0974 WD-repeat protein WDR6 99.7 1.7E-12 3.8E-17 147.0 41.5 186 315-528 99-290 (967)
208 PRK01742 tolB translocation pr 99.7 1.8E-14 3.9E-19 163.7 25.3 235 366-640 183-426 (429)
209 PF02239 Cytochrom_D1: Cytochr 99.6 2.4E-13 5.2E-18 148.5 31.2 318 563-1014 15-356 (369)
210 KOG1240 Protein kinase contain 99.6 7.9E-14 1.7E-18 159.2 26.3 269 332-616 1035-1335(1431)
211 KOG2110 Uncharacterized conser 99.6 1.9E-12 4E-17 129.7 31.8 194 451-661 5-206 (391)
212 KOG0771 Prolactin regulatory e 99.6 9.5E-15 2.1E-19 148.8 15.6 196 348-571 148-353 (398)
213 PF02239 Cytochrom_D1: Cytochr 99.6 7.7E-13 1.7E-17 144.5 31.1 333 509-969 6-356 (369)
214 KOG0290 Conserved WD40 repeat- 99.6 7.4E-14 1.6E-18 134.5 20.0 259 327-605 77-356 (364)
215 KOG2659 LisH motif-containing 99.6 7.1E-15 1.5E-19 139.8 12.4 171 3-182 24-204 (228)
216 KOG2394 WD40 protein DMR-N9 [G 99.6 5.6E-14 1.2E-18 146.6 19.7 208 840-1063 182-455 (636)
217 KOG0974 WD-repeat protein WDR6 99.6 6.3E-12 1.4E-16 142.5 37.2 277 344-661 7-290 (967)
218 KOG1334 WD40 repeat protein [G 99.6 1.9E-14 4.2E-19 148.3 15.5 324 532-906 136-469 (559)
219 COG4946 Uncharacterized protei 99.6 2.2E-10 4.8E-15 118.1 43.8 415 315-892 50-507 (668)
220 KOG2321 WD40 repeat protein [G 99.6 2.1E-13 4.5E-18 143.5 22.2 285 337-660 44-344 (703)
221 PRK01742 tolB translocation pr 99.6 2.2E-13 4.8E-18 154.8 23.4 217 340-596 199-426 (429)
222 PF04762 IKI3: IKI3 family; I 99.6 4.8E-09 1E-13 127.5 60.7 421 405-904 74-565 (928)
223 KOG1523 Actin-related protein 99.6 4.7E-13 1E-17 131.1 20.3 234 405-650 9-269 (361)
224 KOG1832 HIV-1 Vpr-binding prot 99.5 1.5E-14 3.2E-19 158.6 10.6 341 169-648 1013-1378(1516)
225 KOG2041 WD40 repeat protein [G 99.5 7.7E-12 1.7E-16 134.6 30.7 534 405-1063 13-622 (1189)
226 KOG2111 Uncharacterized conser 99.5 3.2E-11 7E-16 118.5 32.3 238 408-661 7-258 (346)
227 KOG2315 Predicted translation 99.5 9.6E-12 2.1E-16 131.5 30.4 353 538-985 34-410 (566)
228 KOG2139 WD40 repeat protein [G 99.5 6E-12 1.3E-16 125.3 26.6 285 345-658 99-430 (445)
229 KOG2139 WD40 repeat protein [G 99.5 2.8E-12 6E-17 127.6 24.0 189 496-699 100-302 (445)
230 PRK03629 tolB translocation pr 99.5 4.5E-12 9.7E-17 143.6 29.5 236 367-639 179-427 (429)
231 KOG2315 Predicted translation 99.5 1.8E-11 3.9E-16 129.5 31.1 308 344-695 34-372 (566)
232 KOG1310 WD40 repeat protein [G 99.5 1.8E-13 3.9E-18 142.8 15.8 239 341-623 47-311 (758)
233 KOG1272 WD40-repeat-containing 99.5 5.4E-14 1.2E-18 144.1 11.0 277 346-661 131-411 (545)
234 COG5354 Uncharacterized protei 99.5 7.7E-12 1.7E-16 130.4 26.9 349 345-785 33-420 (561)
235 KOG2394 WD40 protein DMR-N9 [G 99.5 2E-12 4.4E-17 135.1 21.9 275 346-661 125-454 (636)
236 PRK04922 tolB translocation pr 99.5 5.8E-12 1.3E-16 143.6 27.7 238 367-639 184-432 (433)
237 PRK03629 tolB translocation pr 99.5 5.1E-12 1.1E-16 143.1 26.8 236 327-595 181-427 (429)
238 PRK02889 tolB translocation pr 99.5 5.5E-12 1.2E-16 143.1 26.5 225 402-640 191-425 (427)
239 KOG1272 WD40-repeat-containing 99.5 1.1E-13 2.3E-18 142.0 11.0 270 406-698 129-400 (545)
240 PRK02889 tolB translocation pr 99.5 6.7E-12 1.5E-16 142.4 26.0 246 316-595 164-424 (427)
241 PRK05137 tolB translocation pr 99.5 1.7E-11 3.6E-16 140.1 29.4 222 402-639 197-432 (435)
242 KOG1354 Serine/threonine prote 99.5 7.9E-12 1.7E-16 123.5 21.6 172 829-1008 162-362 (433)
243 KOG3881 Uncharacterized conser 99.5 8E-12 1.7E-16 126.1 21.9 272 344-640 55-342 (412)
244 COG4946 Uncharacterized protei 99.5 2.1E-10 4.6E-15 118.3 32.0 171 842-1049 331-507 (668)
245 PRK04922 tolB translocation pr 99.5 1.2E-11 2.6E-16 141.0 25.3 235 327-595 186-432 (433)
246 KOG2111 Uncharacterized conser 99.4 2.6E-10 5.6E-15 112.3 30.1 238 346-616 7-257 (346)
247 COG5354 Uncharacterized protei 99.4 1.2E-10 2.6E-15 121.7 28.9 376 521-997 15-421 (561)
248 PF04762 IKI3: IKI3 family; I 99.4 2.5E-08 5.3E-13 121.4 53.2 248 407-662 22-336 (928)
249 PRK05137 tolB translocation pr 99.4 5.8E-11 1.3E-15 135.7 26.9 235 327-595 184-432 (435)
250 KOG3881 Uncharacterized conser 99.4 3.3E-11 7.1E-16 121.7 21.2 243 406-661 55-322 (412)
251 KOG2321 WD40 repeat protein [G 99.4 1.1E-10 2.4E-15 123.3 25.0 288 449-796 49-345 (703)
252 KOG1354 Serine/threonine prote 99.4 7.7E-11 1.7E-15 116.7 20.6 262 343-618 24-362 (433)
253 PF10282 Lactonase: Lactonase, 99.4 1.7E-09 3.6E-14 119.2 33.3 311 511-880 2-345 (345)
254 COG2706 3-carboxymuconate cycl 99.3 8.1E-09 1.8E-13 104.6 32.3 301 517-881 15-345 (346)
255 PF08662 eIF2A: Eukaryotic tra 99.3 2E-10 4.4E-15 113.7 20.4 163 409-579 8-185 (194)
256 KOG2314 Translation initiation 99.3 2E-09 4.4E-14 113.5 28.0 312 347-697 213-557 (698)
257 PRK04792 tolB translocation pr 99.3 9.4E-10 2E-14 125.2 28.2 223 402-639 213-446 (448)
258 PRK00178 tolB translocation pr 99.3 1.4E-09 3E-14 124.8 29.7 224 402-640 194-428 (430)
259 PRK00178 tolB translocation pr 99.3 6.8E-10 1.5E-14 127.3 27.1 235 327-595 181-427 (430)
260 TIGR02800 propeller_TolB tol-p 99.3 1E-09 2.2E-14 126.0 28.3 210 402-624 185-405 (417)
261 PRK01029 tolB translocation pr 99.3 1.1E-09 2.4E-14 123.5 27.5 240 327-596 167-425 (428)
262 TIGR02800 propeller_TolB tol-p 99.3 7.9E-10 1.7E-14 126.9 25.8 222 327-581 172-405 (417)
263 PRK04792 tolB translocation pr 99.3 8.5E-10 1.8E-14 125.5 24.7 236 327-595 200-446 (448)
264 KOG2314 Translation initiation 99.3 2.9E-09 6.2E-14 112.4 26.2 289 340-660 246-574 (698)
265 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.7E-08 3.8E-13 107.3 32.4 123 879-1013 200-338 (352)
266 KOG1409 Uncharacterized conser 99.3 5.1E-10 1.1E-14 111.2 19.3 352 446-904 19-395 (404)
267 PF10282 Lactonase: Lactonase, 99.2 3.2E-08 7E-13 109.0 35.4 246 406-659 36-322 (345)
268 PRK01029 tolB translocation pr 99.2 5.7E-09 1.2E-13 117.7 29.7 225 402-640 180-425 (428)
269 PF08662 eIF2A: Eukaryotic tra 99.2 1.4E-09 3.1E-14 107.6 20.5 159 455-623 9-186 (194)
270 KOG4547 WD40 repeat-containing 99.2 2.4E-09 5.3E-14 114.8 23.0 192 416-616 3-221 (541)
271 COG2706 3-carboxymuconate cycl 99.2 1E-07 2.2E-12 96.8 33.1 286 327-638 20-345 (346)
272 TIGR02658 TTQ_MADH_Hv methylam 99.2 3.5E-08 7.6E-13 105.0 31.1 264 367-668 27-338 (352)
273 KOG4547 WD40 repeat-containing 99.2 4.4E-09 9.5E-14 112.8 23.2 192 354-572 3-220 (541)
274 KOG1409 Uncharacterized conser 99.2 2.4E-09 5.3E-14 106.5 19.5 255 575-906 15-273 (404)
275 KOG4190 Uncharacterized conser 99.2 2.1E-10 4.6E-15 120.0 11.7 244 401-658 730-987 (1034)
276 KOG1064 RAVE (regulator of V-A 99.1 6E-10 1.3E-14 132.5 13.1 200 341-583 2205-2409(2439)
277 KOG0280 Uncharacterized conser 99.1 3.2E-08 6.9E-13 96.7 21.1 269 366-661 45-335 (339)
278 KOG0280 Uncharacterized conser 99.0 5.5E-08 1.2E-12 95.0 20.6 189 344-551 69-266 (339)
279 KOG1064 RAVE (regulator of V-A 99.0 1.5E-09 3.2E-14 129.3 11.4 201 402-625 2204-2408(2439)
280 TIGR03300 assembly_YfgL outer 99.0 6.3E-07 1.4E-11 101.0 32.0 263 359-668 67-346 (377)
281 TIGR03300 assembly_YfgL outer 99.0 2.9E-07 6.2E-12 103.8 29.1 259 356-656 105-376 (377)
282 KOG4190 Uncharacterized conser 98.9 5.5E-09 1.2E-13 109.7 12.0 300 329-655 717-1032(1034)
283 COG5170 CDC55 Serine/threonine 98.9 8.5E-09 1.8E-13 100.8 12.5 240 766-1006 87-368 (460)
284 KOG3617 WD40 and TPR repeat-co 98.9 3.5E-07 7.6E-12 101.5 25.2 335 409-850 18-374 (1416)
285 PLN02919 haloacid dehalogenase 98.9 1E-06 2.2E-11 110.0 32.6 245 410-661 571-890 (1057)
286 PLN02919 haloacid dehalogenase 98.9 1.4E-06 3.1E-11 108.7 32.6 257 348-619 571-892 (1057)
287 KOG0309 Conserved WD40 repeat- 98.9 3.4E-08 7.4E-13 107.8 14.8 265 327-616 49-340 (1081)
288 KOG0309 Conserved WD40 repeat- 98.8 4E-08 8.6E-13 107.3 14.4 293 339-661 19-341 (1081)
289 PF15492 Nbas_N: Neuroblastoma 98.8 1.4E-06 3E-11 86.0 23.5 221 836-1070 2-271 (282)
290 KOG1832 HIV-1 Vpr-binding prot 98.8 3.6E-09 7.8E-14 117.3 5.2 217 401-647 1096-1319(1516)
291 PF15492 Nbas_N: Neuroblastoma 98.8 4.6E-06 1E-10 82.5 26.0 231 412-661 3-261 (282)
292 KOG3914 WD repeat protein WDR4 98.8 5.1E-08 1.1E-12 99.9 13.0 164 346-535 64-232 (390)
293 PRK04043 tolB translocation pr 98.8 2.6E-06 5.7E-11 95.4 27.7 214 327-574 171-402 (419)
294 KOG1897 Damage-specific DNA bi 98.8 0.001 2.2E-08 76.9 56.9 607 347-1061 260-943 (1096)
295 COG5170 CDC55 Serine/threonine 98.8 2.2E-07 4.8E-12 91.2 15.1 247 405-659 25-367 (460)
296 PF07433 DUF1513: Protein of u 98.7 1.1E-05 2.3E-10 82.8 26.6 251 589-893 8-276 (305)
297 KOG4532 WD40-like repeat conta 98.7 2.2E-06 4.8E-11 82.8 20.1 227 359-616 86-332 (344)
298 KOG0882 Cyclophilin-related pe 98.7 9.8E-07 2.1E-11 91.4 18.5 258 341-624 6-314 (558)
299 PRK04043 tolB translocation pr 98.7 4.5E-06 9.7E-11 93.6 25.4 205 428-650 169-388 (419)
300 KOG0396 Uncharacterized conser 98.7 3E-07 6.4E-12 93.3 13.2 170 6-188 116-297 (389)
301 PF07433 DUF1513: Protein of u 98.7 1.9E-05 4.1E-10 81.0 26.4 233 347-610 7-280 (305)
302 PRK11138 outer membrane biogen 98.6 6.1E-05 1.3E-09 85.2 31.7 187 467-661 71-276 (394)
303 KOG3914 WD repeat protein WDR4 98.6 4.2E-07 9.2E-12 93.3 12.4 156 833-1010 64-228 (390)
304 KOG4532 WD40-like repeat conta 98.6 8.1E-06 1.8E-10 79.0 20.1 208 327-557 98-321 (344)
305 PF08450 SGL: SMP-30/Gluconola 98.6 6.6E-05 1.4E-09 78.7 29.3 218 411-648 4-244 (246)
306 PF10607 CLTH: CTLH/CRA C-term 98.6 2.1E-07 4.5E-12 88.0 9.1 134 38-182 5-141 (145)
307 KOG4714 Nucleoporin [Nuclear s 98.6 1.1E-06 2.4E-11 84.6 13.6 208 347-573 39-255 (319)
308 KOG3617 WD40 and TPR repeat-co 98.6 4.5E-06 9.7E-11 93.0 20.0 506 542-1091 19-575 (1416)
309 PRK11138 outer membrane biogen 98.6 4.6E-05 9.9E-10 86.2 29.3 258 360-658 123-393 (394)
310 PF08450 SGL: SMP-30/Gluconola 98.5 0.00013 2.8E-09 76.5 30.2 219 349-604 4-244 (246)
311 KOG2695 WD40 repeat protein [G 98.5 2.4E-07 5.3E-12 92.5 8.3 164 351-538 218-388 (425)
312 PF13360 PQQ_2: PQQ-like domai 98.5 5.5E-05 1.2E-09 79.2 26.2 221 366-622 2-237 (238)
313 PF13360 PQQ_2: PQQ-like domai 98.5 4.6E-05 1E-09 79.8 25.4 218 427-662 2-233 (238)
314 KOG4714 Nucleoporin [Nuclear s 98.5 2.7E-06 6E-11 81.9 13.9 162 342-527 87-255 (319)
315 KOG0882 Cyclophilin-related pe 98.5 3E-06 6.6E-11 87.9 14.9 255 405-669 8-314 (558)
316 KOG1645 RING-finger-containing 98.5 1.9E-05 4.1E-10 81.2 20.3 248 401-659 188-461 (463)
317 KOG1920 IkappaB kinase complex 98.5 5.3E-05 1.1E-09 89.1 25.6 272 344-658 68-364 (1265)
318 KOG1897 Damage-specific DNA bi 98.4 0.01 2.3E-07 69.0 53.8 595 341-1005 303-942 (1096)
319 KOG2695 WD40 repeat protein [G 98.3 1.4E-06 2.9E-11 87.4 8.3 164 457-628 217-389 (425)
320 PF06433 Me-amine-dh_H: Methyl 98.3 0.0002 4.2E-09 74.6 24.2 294 607-1014 17-329 (342)
321 KOG3621 WD40 repeat-containing 98.3 0.0001 2.2E-09 81.8 22.8 285 343-665 32-359 (726)
322 PRK02888 nitrous-oxide reducta 98.3 0.00012 2.6E-09 82.4 23.6 147 838-994 283-450 (635)
323 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00094 2E-08 65.0 26.2 143 353-524 19-163 (354)
324 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.0014 2.9E-08 63.9 27.0 127 418-554 23-152 (354)
325 PF00400 WD40: WD domain, G-be 98.3 2.1E-06 4.6E-11 59.7 6.4 39 862-901 1-39 (39)
326 PF00400 WD40: WD domain, G-be 98.3 2E-06 4.3E-11 59.9 5.9 37 336-373 2-39 (39)
327 KOG2066 Vacuolar assembly/sort 98.3 3.1E-05 6.7E-10 86.9 17.6 182 343-572 38-233 (846)
328 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00043 9.2E-09 76.8 26.9 299 353-697 1-347 (353)
329 KOG2114 Vacuolar assembly/sort 98.2 0.00022 4.8E-09 80.9 23.7 204 351-584 30-256 (933)
330 KOG2066 Vacuolar assembly/sort 98.2 1.8E-05 3.9E-10 88.7 14.9 190 831-1061 39-234 (846)
331 KOG1645 RING-finger-containing 98.2 0.0001 2.2E-09 75.9 19.0 244 342-615 191-461 (463)
332 KOG1920 IkappaB kinase complex 98.2 0.00031 6.8E-09 82.8 24.2 243 406-662 68-325 (1265)
333 KOG2114 Vacuolar assembly/sort 98.2 0.00035 7.6E-09 79.3 23.5 202 408-624 27-252 (933)
334 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00033 7.1E-09 77.7 23.6 146 830-994 182-346 (353)
335 PF08596 Lgl_C: Lethal giant l 98.2 0.00062 1.3E-08 75.0 25.1 295 766-1085 3-367 (395)
336 PRK02888 nitrous-oxide reducta 98.2 0.00083 1.8E-08 75.9 25.7 283 358-660 67-405 (635)
337 PF08513 LisH: LisH; InterPro 98.1 5E-06 1.1E-10 51.0 4.1 27 6-32 1-27 (27)
338 KOG1275 PAB-dependent poly(A) 98.0 0.00011 2.5E-09 83.4 15.9 184 467-658 149-341 (1118)
339 PF04053 Coatomer_WDAD: Coatom 98.0 0.0012 2.6E-08 73.8 23.7 225 402-661 28-264 (443)
340 KOG1275 PAB-dependent poly(A) 98.0 0.0001 2.2E-09 83.8 15.1 182 417-614 146-341 (1118)
341 smart00668 CTLH C-terminal to 98.0 4.8E-06 1E-10 64.1 3.2 53 37-90 4-56 (58)
342 PF08596 Lgl_C: Lethal giant l 98.0 0.003 6.4E-08 69.8 25.7 251 346-603 3-324 (395)
343 PF06433 Me-amine-dh_H: Methyl 98.0 0.0055 1.2E-07 64.1 25.6 269 367-670 17-330 (342)
344 smart00667 LisH Lissencephaly 97.9 1.4E-05 3.1E-10 53.5 4.4 32 4-35 2-33 (34)
345 cd00216 PQQ_DH Dehydrogenases 97.9 0.0079 1.7E-07 69.8 29.1 274 360-664 64-429 (488)
346 PF14583 Pectate_lyase22: Olig 97.9 0.026 5.7E-07 60.4 29.5 278 351-658 42-380 (386)
347 PF11768 DUF3312: Protein of u 97.9 0.00014 3.1E-09 79.7 13.0 80 337-438 252-331 (545)
348 KOG2817 Predicted E3 ubiquitin 97.9 0.0001 2.2E-09 76.6 11.2 113 5-119 116-241 (394)
349 PF02897 Peptidase_S9_N: Proly 97.9 0.021 4.6E-07 65.3 31.3 249 346-621 125-410 (414)
350 KOG3621 WD40 repeat-containing 97.8 0.0033 7.1E-08 70.3 22.2 81 580-661 28-108 (726)
351 PF11768 DUF3312: Protein of u 97.8 0.0011 2.3E-08 73.1 17.7 124 335-481 196-327 (545)
352 PF14583 Pectate_lyase22: Olig 97.8 0.034 7.4E-07 59.5 28.3 227 413-650 42-303 (386)
353 KOG1008 Uncharacterized conser 97.8 9.5E-06 2.1E-10 88.3 1.8 204 344-572 56-275 (783)
354 PF06977 SdiA-regulated: SdiA- 97.7 0.016 3.6E-07 59.1 24.2 190 344-556 21-239 (248)
355 cd00216 PQQ_DH Dehydrogenases 97.7 0.016 3.4E-07 67.3 27.2 245 359-627 112-436 (488)
356 COG3490 Uncharacterized protei 97.6 0.028 6E-07 56.1 22.8 265 590-902 72-347 (366)
357 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.28 6E-06 57.3 35.8 111 509-625 70-199 (527)
358 PF04841 Vps16_N: Vps16, N-ter 97.5 0.087 1.9E-06 59.3 29.2 106 831-969 216-323 (410)
359 COG0823 TolB Periplasmic compo 97.5 0.0073 1.6E-07 67.4 20.3 203 327-558 175-389 (425)
360 PF06977 SdiA-regulated: SdiA- 97.5 0.11 2.4E-06 53.2 26.3 204 446-656 16-247 (248)
361 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.21 4.5E-06 58.3 32.0 284 359-665 71-496 (527)
362 PF04053 Coatomer_WDAD: Coatom 97.4 0.014 3E-07 65.5 21.0 219 343-615 31-262 (443)
363 PF14655 RAB3GAP2_N: Rab3 GTPa 97.4 0.04 8.6E-07 60.7 23.9 77 830-906 306-401 (415)
364 COG3391 Uncharacterized conser 97.4 0.21 4.6E-06 55.8 30.5 267 345-639 31-308 (381)
365 PF04841 Vps16_N: Vps16, N-ter 97.4 0.21 4.6E-06 56.2 30.2 177 407-597 81-271 (410)
366 COG0823 TolB Periplasmic compo 97.4 0.011 2.4E-07 66.1 19.8 190 405-605 191-389 (425)
367 COG3490 Uncharacterized protei 97.4 0.069 1.5E-06 53.4 21.7 248 336-614 59-347 (366)
368 PF00780 CNH: CNH domain; Int 97.3 0.18 4E-06 53.8 27.8 229 416-671 5-266 (275)
369 COG3386 Gluconolactonase [Carb 97.3 0.11 2.4E-06 55.3 24.8 241 592-893 31-275 (307)
370 PF08553 VID27: VID27 cytoplas 97.3 0.057 1.2E-06 64.1 24.1 141 418-571 493-646 (794)
371 PF02897 Peptidase_S9_N: Proly 97.3 0.24 5.2E-06 56.6 29.1 243 408-661 125-406 (414)
372 COG3391 Uncharacterized conser 97.2 0.52 1.1E-05 52.7 31.3 240 408-661 32-285 (381)
373 PF03178 CPSF_A: CPSF A subuni 97.2 0.069 1.5E-06 58.5 23.4 216 367-611 2-261 (321)
374 PF00780 CNH: CNH domain; Int 97.2 0.26 5.7E-06 52.6 27.1 228 355-626 6-266 (275)
375 PRK13616 lipoprotein LpqB; Pro 97.2 0.029 6.2E-07 65.7 20.1 211 832-1072 350-580 (591)
376 COG3386 Gluconolactonase [Carb 97.1 0.14 3E-06 54.5 23.4 221 351-604 31-274 (307)
377 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.38 8.2E-06 53.2 27.0 84 539-626 308-409 (415)
378 KOG1008 Uncharacterized conser 97.1 0.00024 5.2E-09 77.8 1.7 188 497-690 59-256 (783)
379 KOG2395 Protein involved in va 97.0 0.024 5.1E-07 61.5 15.6 144 416-571 343-499 (644)
380 KOG4640 Anaphase-promoting com 96.9 0.0038 8.3E-08 68.9 9.4 94 345-461 21-115 (665)
381 KOG1898 Splicing factor 3b, su 96.8 1.9 4.1E-05 51.6 35.2 111 937-1063 939-1051(1205)
382 KOG4499 Ca2+-binding protein R 96.8 0.17 3.8E-06 49.1 17.9 101 768-882 161-263 (310)
383 PF04494 TFIID_90kDa: WD40 ass 96.7 0.0014 3E-08 60.9 3.6 64 72-135 40-103 (142)
384 cd08044 TAF5_NTD2 TAF5_NTD2 is 96.7 0.0017 3.7E-08 59.6 4.2 78 72-149 29-113 (133)
385 smart00320 WD40 WD40 repeats. 96.6 0.0048 1E-07 42.0 5.3 35 338-373 5-40 (40)
386 PF03178 CPSF_A: CPSF A subuni 96.6 0.24 5.2E-06 54.2 21.1 175 476-659 3-202 (321)
387 smart00320 WD40 WD40 repeats. 96.6 0.0055 1.2E-07 41.7 5.2 39 862-901 2-40 (40)
388 PRK13616 lipoprotein LpqB; Pro 96.5 0.1 2.2E-06 61.2 17.8 155 873-1061 350-526 (591)
389 PF05694 SBP56: 56kDa selenium 96.5 0.45 9.7E-06 51.6 20.5 150 508-657 87-275 (461)
390 PF08553 VID27: VID27 cytoplas 96.4 0.086 1.9E-06 62.6 16.4 141 467-614 496-646 (794)
391 KOG4441 Proteins containing BT 96.3 0.32 6.9E-06 57.2 20.2 233 417-661 284-548 (571)
392 PRK10115 protease 2; Provision 96.2 4.4 9.5E-05 49.2 35.8 244 407-661 127-396 (686)
393 KOG2395 Protein involved in va 96.2 0.19 4.2E-06 54.8 16.0 145 841-1004 343-499 (644)
394 KOG4640 Anaphase-promoting com 96.2 0.022 4.8E-07 63.2 9.3 93 495-594 21-114 (665)
395 PF14783 BBS2_Mid: Ciliary BBS 96.2 0.17 3.7E-06 43.6 12.5 99 350-478 8-109 (111)
396 PF15390 DUF4613: Domain of un 96.1 3.2 6.9E-05 46.7 30.1 149 539-695 57-220 (671)
397 KOG2079 Vacuolar assembly/sort 96.1 0.088 1.9E-06 62.3 14.0 103 417-525 98-202 (1206)
398 PF14783 BBS2_Mid: Ciliary BBS 96.0 0.6 1.3E-05 40.3 15.3 103 497-610 2-109 (111)
399 PF12894 Apc4_WD40: Anaphase-p 95.9 0.029 6.2E-07 40.1 5.8 34 344-379 11-44 (47)
400 PHA02713 hypothetical protein; 95.9 0.63 1.4E-05 54.9 20.5 196 841-1073 302-544 (557)
401 PF14727 PHTB1_N: PTHB1 N-term 95.9 4 8.6E-05 45.5 31.7 278 353-661 33-362 (418)
402 PF07995 GSDH: Glucose / Sorbo 95.9 3.6 7.8E-05 45.0 26.4 58 597-654 271-330 (331)
403 PF05096 Glu_cyclase_2: Glutam 95.9 1 2.3E-05 45.9 18.7 200 763-1048 43-249 (264)
404 KOG1898 Splicing factor 3b, su 95.8 6.3 0.00014 47.5 36.9 113 409-523 542-668 (1205)
405 PHA02713 hypothetical protein; 95.8 0.76 1.7E-05 54.2 20.6 150 507-661 351-535 (557)
406 PRK10115 protease 2; Provision 95.8 6.9 0.00015 47.6 34.5 242 346-618 128-397 (686)
407 PF10647 Gmad1: Lipoprotein Lp 95.7 1.4 3E-05 46.0 20.1 149 833-998 25-188 (253)
408 KOG2079 Vacuolar assembly/sort 95.7 0.36 7.8E-06 57.5 16.5 98 359-481 101-201 (1206)
409 KOG4499 Ca2+-binding protein R 95.5 2.2 4.9E-05 41.8 18.5 143 451-602 108-271 (310)
410 TIGR03074 PQQ_membr_DH membran 95.5 3.3 7.1E-05 50.3 24.4 203 418-624 194-486 (764)
411 PF12894 Apc4_WD40: Anaphase-p 95.5 0.055 1.2E-06 38.6 5.8 31 406-436 11-41 (47)
412 PF05694 SBP56: 56kDa selenium 95.4 4.3 9.3E-05 44.5 22.3 206 355-574 86-344 (461)
413 COG3204 Uncharacterized protei 95.4 1.7 3.8E-05 44.4 18.2 122 536-661 83-212 (316)
414 TIGR03118 PEPCTERM_chp_1 conse 95.4 3.8 8.3E-05 42.3 21.8 231 631-906 24-282 (336)
415 PF05096 Glu_cyclase_2: Glutam 94.9 5.3 0.00012 40.9 23.9 185 406-605 44-250 (264)
416 KOG2444 WD40 repeat protein [G 94.8 0.031 6.7E-07 54.2 4.0 88 467-555 72-162 (238)
417 TIGR03074 PQQ_membr_DH membran 94.7 8.8 0.00019 46.8 24.9 195 467-662 196-480 (764)
418 PF10168 Nup88: Nuclear pore c 94.6 2.9 6.2E-05 50.3 20.5 77 830-906 83-182 (717)
419 PF14870 PSII_BNR: Photosynthe 94.6 7.5 0.00016 41.3 29.9 158 830-1002 143-301 (302)
420 PF12234 Rav1p_C: RAVE protein 94.5 0.96 2.1E-05 52.6 15.7 111 453-571 31-155 (631)
421 KOG4441 Proteins containing BT 94.3 6.9 0.00015 46.2 22.6 233 359-620 287-551 (571)
422 KOG2444 WD40 repeat protein [G 94.1 0.17 3.6E-06 49.4 7.1 100 359-481 72-175 (238)
423 PF10168 Nup88: Nuclear pore c 93.9 13 0.00028 45.0 23.8 98 406-529 84-182 (717)
424 PF02333 Phytase: Phytase; In 93.8 12 0.00027 40.8 22.6 188 467-661 70-292 (381)
425 PRK13684 Ycf48-like protein; P 93.7 13 0.00028 40.8 28.8 156 831-1003 172-329 (334)
426 PF10647 Gmad1: Lipoprotein Lp 93.7 10 0.00022 39.6 22.3 150 346-517 25-186 (253)
427 PHA03098 kelch-like protein; P 93.7 4.6 9.9E-05 48.0 20.1 194 841-1071 293-520 (534)
428 COG3204 Uncharacterized protei 93.6 10 0.00022 39.1 21.3 170 447-626 81-273 (316)
429 KOG2280 Vacuolar assembly/sort 93.6 13 0.00029 43.3 21.5 200 366-596 63-270 (829)
430 KOG2377 Uncharacterized conser 93.6 12 0.00027 40.6 20.0 119 327-465 47-167 (657)
431 COG4257 Vgb Streptogramin lyas 93.4 9.9 0.00021 38.5 21.7 242 722-1012 69-312 (353)
432 PHA03098 kelch-like protein; P 93.2 3.7 8.1E-05 48.7 18.5 152 507-661 342-513 (534)
433 COG3823 Glutamine cyclotransfe 92.9 5.3 0.00012 38.6 14.6 184 842-1048 55-247 (262)
434 TIGR03118 PEPCTERM_chp_1 conse 92.5 15 0.00033 38.1 23.8 228 453-687 24-307 (336)
435 KOG1916 Nuclear protein, conta 92.1 0.3 6.6E-06 56.7 6.6 119 407-531 181-328 (1283)
436 PF12234 Rav1p_C: RAVE protein 92.0 5.9 0.00013 46.3 16.8 113 540-658 31-155 (631)
437 COG4590 ABC-type uncharacteriz 91.8 4.3 9.3E-05 43.8 13.9 166 763-966 219-392 (733)
438 KOG2280 Vacuolar assembly/sort 91.1 21 0.00045 41.8 19.2 198 428-641 64-271 (829)
439 PF10313 DUF2415: Uncharacteri 91.1 0.76 1.6E-05 31.8 5.1 33 345-377 1-35 (43)
440 PLN00033 photosystem II stabil 91.0 13 0.00028 41.5 17.7 153 832-1003 239-397 (398)
441 PHA02790 Kelch-like protein; P 91.0 20 0.00042 41.7 20.2 185 841-1063 270-473 (480)
442 PF08728 CRT10: CRT10; InterP 90.8 16 0.00035 43.3 18.7 115 408-525 102-245 (717)
443 PF14781 BBS2_N: Ciliary BBSom 90.8 10 0.00022 34.2 13.1 117 348-487 2-129 (136)
444 TIGR02604 Piru_Ver_Nterm putat 90.6 6 0.00013 44.1 15.1 108 345-472 14-142 (367)
445 TIGR02604 Piru_Ver_Nterm putat 90.4 7.7 0.00017 43.3 15.7 150 833-996 15-204 (367)
446 PHA02790 Kelch-like protein; P 90.3 13 0.00029 43.1 18.1 148 507-661 318-472 (480)
447 PF10433 MMS1_N: Mono-function 89.6 49 0.0011 38.9 39.4 241 407-657 44-340 (504)
448 PF10395 Utp8: Utp8 family; I 89.6 50 0.0011 38.9 22.3 167 406-581 129-314 (670)
449 PF14870 PSII_BNR: Photosynthe 89.3 33 0.00072 36.5 33.6 283 341-656 13-301 (302)
450 COG5167 VID27 Protein involved 89.0 23 0.00049 39.3 16.6 200 345-572 419-632 (776)
451 PF11725 AvrE: Pathogenicity f 89.0 63 0.0014 42.0 22.5 148 343-527 361-517 (1774)
452 COG3823 Glutamine cyclotransfe 89.0 11 0.00023 36.7 12.5 147 507-661 55-206 (262)
453 PF14727 PHTB1_N: PTHB1 N-term 88.7 46 0.00099 37.4 30.3 144 507-658 36-203 (418)
454 PF15390 DUF4613: Domain of un 88.6 50 0.0011 37.7 28.0 113 407-524 57-184 (671)
455 PF10313 DUF2415: Uncharacteri 88.2 1.4 3.1E-05 30.5 4.7 33 873-905 1-35 (43)
456 PF12657 TFIIIC_delta: Transcr 88.0 3.3 7.2E-05 40.2 9.3 31 407-437 86-122 (173)
457 COG1520 FOG: WD40-like repeat 87.7 52 0.0011 36.8 23.5 197 420-626 70-279 (370)
458 PRK13684 Ycf48-like protein; P 87.6 48 0.001 36.3 32.7 278 344-657 45-329 (334)
459 COG3292 Predicted periplasmic 87.3 59 0.0013 37.0 23.9 314 342-695 162-481 (671)
460 COG5167 VID27 Protein involved 87.2 32 0.0007 38.1 16.4 153 453-615 468-632 (776)
461 KOG3616 Selective LIM binding 86.5 45 0.00098 38.7 17.7 68 450-524 13-81 (1636)
462 KOG3630 Nuclear pore complex, 86.3 14 0.00029 45.3 14.2 102 832-948 156-260 (1405)
463 COG4590 ABC-type uncharacteriz 85.9 2.8 6.1E-05 45.1 7.8 162 830-1008 219-389 (733)
464 KOG3630 Nuclear pore complex, 85.9 7.3 0.00016 47.4 11.8 145 453-603 102-261 (1405)
465 KOG1900 Nuclear pore complex, 85.8 8.6 0.00019 47.8 12.6 166 334-527 68-273 (1311)
466 PF10214 Rrn6: RNA polymerase 85.8 1E+02 0.0022 38.3 25.4 170 830-1006 78-277 (765)
467 PF07569 Hira: TUP1-like enhan 85.6 4.8 0.0001 40.7 9.2 73 352-438 18-97 (219)
468 KOG4460 Nuclear pore complex, 84.9 13 0.00029 41.1 12.3 91 975-1071 103-209 (741)
469 KOG1916 Nuclear protein, conta 84.8 1.5 3.3E-05 51.3 5.6 148 838-1003 190-372 (1283)
470 PF02333 Phytase: Phytase; In 84.3 71 0.0015 35.2 20.1 198 844-1062 69-292 (381)
471 PF07676 PD40: WD40-like Beta 84.2 3.8 8.2E-05 27.9 5.4 30 343-372 7-38 (39)
472 KOG4659 Uncharacterized conser 84.1 1.3E+02 0.0028 38.1 32.6 23 763-785 660-682 (1899)
473 PF11725 AvrE: Pathogenicity f 84.1 87 0.0019 40.8 20.2 377 588-1058 365-770 (1774)
474 KOG2377 Uncharacterized conser 83.3 77 0.0017 34.9 19.0 100 404-507 64-166 (657)
475 KOG1983 Tomosyn and related SN 83.2 25 0.00055 44.5 15.8 71 538-619 198-268 (993)
476 smart00757 CRA CT11-RanBPM. pr 83.1 3.8 8.1E-05 35.4 6.4 85 89-182 2-90 (99)
477 KOG2247 WD40 repeat-containing 82.8 1 2.2E-05 49.0 3.1 125 338-487 68-192 (615)
478 PF07569 Hira: TUP1-like enhan 82.7 6.2 0.00013 39.9 8.6 67 414-483 18-95 (219)
479 TIGR03548 mutarot_permut cycli 82.7 79 0.0017 34.5 21.5 71 507-577 123-199 (323)
480 COG4257 Vgb Streptogramin lyas 82.6 61 0.0013 33.2 21.0 231 408-661 63-307 (353)
481 PF08728 CRT10: CRT10; InterP 82.5 7.1 0.00015 46.1 9.9 121 359-481 116-244 (717)
482 PRK14131 N-acetylneuraminic ac 81.9 93 0.002 34.8 21.0 40 609-650 314-353 (376)
483 PF07250 Glyoxal_oxid_N: Glyox 81.6 17 0.00036 37.2 11.1 127 833-969 68-206 (243)
484 PF14761 HPS3_N: Hermansky-Pud 81.5 59 0.0013 32.3 16.5 50 598-650 29-80 (215)
485 PF09862 DUF2089: Protein of u 81.4 9.1 0.0002 33.4 7.7 80 2-98 32-113 (113)
486 TIGR02276 beta_rpt_yvtn 40-res 81.3 5.9 0.00013 27.4 5.7 39 841-880 1-41 (42)
487 PF14761 HPS3_N: Hermansky-Pud 80.6 63 0.0014 32.1 14.7 163 833-1004 19-213 (215)
488 COG5276 Uncharacterized conser 79.4 83 0.0018 32.7 29.1 163 341-533 83-248 (370)
489 PF13449 Phytase-like: Esteras 78.5 1.1E+02 0.0023 33.5 23.7 178 764-960 19-249 (326)
490 PF12768 Rax2: Cortical protei 78.4 38 0.00082 35.7 12.8 83 428-515 16-109 (281)
491 PF12768 Rax2: Cortical protei 78.4 65 0.0014 34.0 14.5 120 367-505 16-147 (281)
492 TIGR03606 non_repeat_PQQ dehyd 77.4 94 0.002 35.4 16.3 62 343-418 28-90 (454)
493 COG5290 IkappaB kinase complex 76.5 72 0.0016 37.7 14.8 59 831-889 295-353 (1243)
494 KOG3616 Selective LIM binding 75.6 98 0.0021 36.2 15.4 77 406-490 14-90 (1636)
495 PF14781 BBS2_N: Ciliary BBSom 75.2 65 0.0014 29.2 12.6 112 412-526 4-125 (136)
496 PF09398 FOP_dimer: FOP N term 75.1 4.7 0.0001 32.7 3.9 31 7-37 20-50 (81)
497 KOG4460 Nuclear pore complex, 75.0 60 0.0013 36.4 13.2 38 588-625 168-208 (741)
498 TIGR03548 mutarot_permut cycli 74.1 1.4E+02 0.003 32.6 19.1 112 508-620 73-199 (323)
499 COG5290 IkappaB kinase complex 74.1 2E+02 0.0043 34.3 20.7 96 542-641 250-348 (1243)
500 PF07250 Glyoxal_oxid_N: Glyox 74.0 49 0.0011 33.9 11.9 146 521-670 49-207 (243)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.5e-70 Score=539.08 Aligned_cols=489 Identities=22% Similarity=0.317 Sum_probs=415.3
Q ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHhhCCCcc---HHHHHHHHhccCHHHHHHHHcCCCCCCCcccchhhHHHHHHHHH
Q 001343 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN---MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1096)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~ 81 (1096)
+.|++||+.|+|+.+||.+|+.+||.|+|+... ...|.++|+.|+|+.++..+..+ .++++....++.|++++|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i-~~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRI-SFEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhc-cCcchhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999886 78999999999999999999887 34444445569999999999
Q ss_pred HHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccCcc-chhhhcccCCchHHHHHHHHHHHhhcccCcccccc
Q 001343 82 LEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFR-ENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDK 160 (1096)
Q Consensus 82 lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~~~~ 160 (1096)
||++..|....|+.+||++..++ .++.+++++|+..+..++.- .++. ..-......|.+|+++|++.|||+++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~-~~~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEE-NTTAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhcccccccccc-chhhhhchhHHHHHHHHHhhCCHhhc----
Confidence 99999999999999999999888 45889999999877665432 2332 11122567899999999999999998
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCcCCCCCCccccCCCCCCCCCCCCCCCCCC
Q 001343 161 LAFPTLKSSRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240 (1096)
Q Consensus 161 ~~~~~~p~~rL~~Ll~qa~~~q~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~f~~ 240 (1096)
+|++||++||+||++||+.+|.|||+ .+..|||.||.|++.+ +|. .+
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~~q--------------ip~-qt------------ 216 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGRLQ--------------IPS-QT------------ 216 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCccc--------------CCc-hh------------
Confidence 99999999999999999999999995 6669999999999955 553 01
Q ss_pred CccccchhhhhhhhhcCCCCcccccccccCCCCCCCCCccccccCCCCCCCCceeecCCccHHHHHhhcCCCCCCCceee
Q 001343 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTY 320 (1096)
Q Consensus 241 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 320 (1096)
T Consensus 217 -------------------------------------------------------------------------------- 216 (519)
T KOG0293|consen 217 -------------------------------------------------------------------------------- 216 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCceeeecCCCCcceEEee-cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccc
Q 001343 321 SSSRHQTWSLDDLPRTVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQA 399 (1096)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l-~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1096)
.+++ .|+++|+-+.||++|+ +||+|+.|.+..||++.....+. ..
T Consensus 217 -----------------~qil~~htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~k----------------l~ 262 (519)
T KOG0293|consen 217 -----------------WQILQDHTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFK----------------LK 262 (519)
T ss_pred -----------------hhhHhhCCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCccee----------------ee
Confidence 1122 3788999999999999 69999999999999987654321 11
Q ss_pred cccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
+.+.+|..+|..+.||||.+||++|+.|..+++||+.+|....... .+|...+.+++|.|||. .+++|+.|+++..
T Consensus 263 ~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~ 338 (519)
T KOG0293|consen 263 KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIM 338 (519)
T ss_pred eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEE
Confidence 3488999999999999999999999999999999999998776432 24678999999999999 8999999999999
Q ss_pred EEcCCceEEEeeCCCC-CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 480 WELSGRKLFNFEGHEA-PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 480 wd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
||.+|+.+..+++-.. .|.+++..+ ||+++++.+.|..|++++.++..... +.....+|+++++|.|++++++.-.
T Consensus 339 wdlDgn~~~~W~gvr~~~v~dlait~--Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL~ 415 (519)
T KOG0293|consen 339 WDLDGNILGNWEGVRDPKVHDLAITY--DGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNLQ 415 (519)
T ss_pred ecCCcchhhcccccccceeEEEEEcC--CCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEcc
Confidence 9999999988887654 488999865 78999999999999999988765553 3344568999999999999998876
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccc-eEEEEEeC-CCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEE
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKS-NGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1096)
+..+.+||++..+.++.+.||.... +-.-||.. +..++++|++|+.|+||+..+++++..+.+|.. .|++++
T Consensus 416 ----~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVs 489 (519)
T KOG0293|consen 416 ----DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVS 489 (519)
T ss_pred ----cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEe
Confidence 8899999999999999999997742 22234543 558999999999999999999999999999876 899999
Q ss_pred EeC-CCCEEEEEECCCcEEEEEcCC
Q 001343 637 FSK-EGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 637 ~s~-~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
|+| +..++|++++||+|+||-...
T Consensus 490 wNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 490 WNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCHHHhhccCCCCeEEEecCCc
Confidence 999 668999999999999998753
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.1e-63 Score=475.78 Aligned_cols=486 Identities=21% Similarity=0.346 Sum_probs=405.0
Q ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHhhCCCcc----HHHHHHHHhccCHHHHHHHHcCCCCCCCcccchhhHHHHHHHH
Q 001343 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1096)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~ 80 (1096)
+.|+||||+|||+|+.++++.++||+|++++++ ++.|-+.|.+|+||.++..+++| .+|+. -+..||+|.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL-KLP~k-----kL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL-KLPDK-----KLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc-cCchh-----HHHHHHHHH
Confidence 458999999999999999999999999999998 78999999999999999999999 44444 688999999
Q ss_pred HHHhhccCCHHHHHHHHHhh--cccccccCHHHHHHHHHHhcccCccchhhhcccCCchHHHHHHHHHHHhhcccCcccc
Q 001343 81 YLEALDRQDKAKAVDILVND--LKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFR 158 (1096)
Q Consensus 81 ~lell~~~~~~~A~~~l~~~--l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~~ 158 (1096)
.|||||.+++..|+.+||+- +..++..+|++|.+|+.|+..++|++++.+.+ ...++.|..+++.|...+..
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V----- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV----- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence 99999999999999999974 44456779999999999999999999998764 23445556777777665554
Q ss_pred ccccCCCCCchHHHHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCcCCCCCCccccCCCCCCCCCCCCCCCC
Q 001343 159 DKLAFPTLKSSRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPF 238 (1096)
Q Consensus 159 ~~~~~~~~p~~rL~~Ll~qa~~~q~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~f 238 (1096)
+||+||+.||+||++||+.+ +++|++.+++ .|
T Consensus 155 -------VppSRLlaLlGQaLKWQqHQ-----------------------------------GLLPPGt~iD------LF 186 (508)
T KOG0275|consen 155 -------VPPSRLLALLGQALKWQQHQ-----------------------------------GLLPPGTTID------LF 186 (508)
T ss_pred -------cChHHHHHHHHHHhhhHhhc-----------------------------------CCCCCCceee------ec
Confidence 99999999999999999875 5688877775 67
Q ss_pred CCCccccchhhhhhhhhcCCCCcccccccccCCCCCCCCCccccccCCCCCCCCceeecCCccHHHHHhhcCCCCCCCce
Q 001343 239 PPTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEV 318 (1096)
Q Consensus 239 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 318 (1096)
++.+. ++ ..+.+.
T Consensus 187 RGkAA---------------------------------------~K--------------~~~Ee~-------------- 199 (508)
T KOG0275|consen 187 RGKAA---------------------------------------MK--------------DQEEER-------------- 199 (508)
T ss_pred cchhh---------------------------------------hh--------------hhHhhh--------------
Confidence 76521 11 000000
Q ss_pred eecCCCceeeecCCCCcceE--EeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCcc
Q 001343 319 TYSSSRHQTWSLDDLPRTVA--VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLP 396 (1096)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~--~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 396 (1096)
.|..+. ..++.++.+.|..|||||+ +|++|+.||.|.|||+.+|+.....+
T Consensus 200 --------------~Pt~l~r~IKFg~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLk------------ 252 (508)
T KOG0275|consen 200 --------------YPTQLARSIKFGQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLK------------ 252 (508)
T ss_pred --------------chHHhhhheecccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhh------------
Confidence 011111 2234667899999999999 69999999999999999998765422
Q ss_pred ccc-cccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC
Q 001343 397 FQA-SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1096)
Q Consensus 397 ~~~-~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~ 475 (1096)
|+. ..+.-+..+|.|+.||.|...||+|+.||.|+||.+.+|.|++.+. .+|...|+|+.|+.|+. .+++++.|.
T Consensus 253 YQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~ 328 (508)
T KOG0275|consen 253 YQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQ 328 (508)
T ss_pred hhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccc
Confidence 221 2356688999999999999999999999999999999999998532 38999999999999999 799999999
Q ss_pred cEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCC--cEEEEEEcCCC-C
Q 001343 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADG-S 551 (1096)
Q Consensus 476 ~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~~-~ 551 (1096)
++++.- .+|++++.++||.+.|+...|.+ +|..+++++.||+|++|+..+.++..++...+. +|.++..-|.. .
T Consensus 329 tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~--dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe 406 (508)
T KOG0275|consen 329 TVRIHGLKSGKCLKEFRGHSSYVNEATFTD--DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE 406 (508)
T ss_pred eEEEeccccchhHHHhcCccccccceEEcC--CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc
Confidence 999999 99999999999999999999965 789999999999999999999999887765443 77887777644 5
Q ss_pred EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC--ccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCC
Q 001343 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR--KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1096)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1096)
.+++|.. .+++++.++. |+.+++|.... +...-+++.+|.|.++++.++|+.++.|...+|.+..++..|..
T Consensus 407 h~iVCNr----sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk- 480 (508)
T KOG0275|consen 407 HFIVCNR----SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK- 480 (508)
T ss_pred eEEEEcC----CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc-
Confidence 6777765 7889999875 67777775432 22445578899999999999999999999999999999988876
Q ss_pred CCccEEEEeCCCCEEEEEECCCcEEEEE
Q 001343 630 PNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1096)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd 657 (1096)
.|..++-+|..+.+|+-+.||.+++|.
T Consensus 481 -dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 -DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred -cccccccCcccchhhhhcccchhhhcC
Confidence 789999999999999999999999995
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.2e-58 Score=485.58 Aligned_cols=577 Identities=19% Similarity=0.267 Sum_probs=485.6
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEecCCCCee-ecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCC
Q 001343 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRL-VSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1096)
Q Consensus 350 v~fsp~g~~llasg~~dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg 428 (1096)
++|+++|+ +|++.. ...|.+-|+.+++.. .. .-..-...+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~-~d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTAC-GDRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEec-CceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999999 688763 456888899998873 21 1233566899999999999999999999
Q ss_pred eEEEEEccCCCccccceeecc-cccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecC
Q 001343 429 LIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKE 506 (1096)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~l~~-h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~ 506 (1096)
.+++|++.+++.++ .++. |.++|.-++|+|.+. .+++|+.|+.+++|| ..+.+...|+||.+.|.++.|+|..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998887 4665 999999999999997 999999999999999 8999999999999999999999988
Q ss_pred CCcEEEEEECCCeEEEEEcCCCCe-eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc
Q 001343 507 NIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK 585 (1096)
Q Consensus 507 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 585 (1096)
+...|++|..|+++++||++.... ...+..|.+.|++++|++|+..+++++. |..+.+||+.+.+..+++....
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 878899999999999999995544 6678889999999999999999999997 9999999998887777776654
Q ss_pred cceEEEEEeCC-----CCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 586 KSNGVVQFDTT-----QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 586 ~~i~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
.+.++.+-++ +.+++++|++|.+++||..+++.+........ ..+..+...+....++..+.|..+.++|..+
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~-~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDS-EEIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCc-hhhhcceeccccCceEEEEccceEEEEEccc
Confidence 4566666666 67999999999999999999988776655432 2467777777667777888899999999888
Q ss_pred CccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccc
Q 001343 661 GLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKP 740 (1096)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~i 740 (1096)
. +..+.+.++.+++. .+.| +-|+...+|.++..+.+|+
T Consensus 313 l-~i~k~ivG~ndEI~-----Dm~~------------------------------------lG~e~~~laVATNs~~lr~ 350 (775)
T KOG0319|consen 313 L-TIVKQIVGYNDEIL-----DMKF------------------------------------LGPEESHLAVATNSPELRL 350 (775)
T ss_pred c-EEehhhcCCchhhe-----eeee------------------------------------cCCccceEEEEeCCCceEE
Confidence 7 77888888877644 3333 1344556677777789999
Q ss_pred eeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCcccc
Q 001343 741 WQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL 820 (1096)
Q Consensus 741 w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~ 820 (1096)
|+.. +..|. .++| |...|.++....+|-.|++++.|.++++|.++.+. ....+
T Consensus 351 y~~~----~~~c~--ii~G---H~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~------------------~~~~~ 403 (775)
T KOG0319|consen 351 YTLP----TSYCQ--IIPG---HTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNC------------------SKSLC 403 (775)
T ss_pred EecC----CCceE--EEeC---chhheeeeeecccCcEEEEecCCceEEEEEecCCc------------------chhhh
Confidence 9876 56666 4667 99999999977788788999999999999983211 11112
Q ss_pred ccccccCCCcCCCeeeeeecCCC-cEEEEec-CCeEEEEEcccceE---------EEeecCCCCCeeEEEEecCCCcEEE
Q 001343 821 MANDVAGVNLEEAVPCIALSKND-SYVMSAT-GGKISLFNMMTFKV---------MTTFMSPPPASTFLAFHPQDNNIIA 889 (1096)
Q Consensus 821 ~~~~~~g~~~~~~v~~l~~s~dg-~~la~~~-dg~v~iwd~~~~~~---------~~~~~~h~~~i~~l~~s~~d~~~l~ 889 (1096)
+. ...| |...|.+++++..+ .+|++++ |.++++|++...+. ..+...|...|++++++| +.++++
T Consensus 404 ~a-~~~g--H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiA 479 (775)
T KOG0319|consen 404 VA-QANG--HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIA 479 (775)
T ss_pred hh-hhcc--cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEE
Confidence 22 3444 99999999998877 7889998 89999999965211 113458999999999999 899999
Q ss_pred EeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceecccc
Q 001343 890 IGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQW 968 (1096)
Q Consensus 890 s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~ 968 (1096)
||+.|++.+||+++... .+.++.||.. .+.+|.|+|..+.+++ +.|.+|+||.+++..|++++
T Consensus 480 T~SqDktaKiW~le~~~---------------l~~vLsGH~R-Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~ 543 (775)
T KOG0319|consen 480 TGSQDKTAKIWDLEQLR---------------LLGVLSGHTR-GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF 543 (775)
T ss_pred ecccccceeeecccCce---------------EEEEeeCCcc-ceEEEEeccccceeEeccCCceEEEEEeccceeeeee
Confidence 99999999999999766 6779999998 9999999999999999 89999999999999999999
Q ss_pred ccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEE
Q 001343 969 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIG 1048 (1096)
Q Consensus 969 ~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~ 1048 (1096)
.+| ...|..+.|-.+|+.|++++.||-|++|++.++++.+.+. + |.+.|| +++-+| ...+++||
T Consensus 544 eGH---~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-------~---H~DrvW--aL~~~~-~~~~~~tg 607 (775)
T KOG0319|consen 544 EGH---TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-------A---HNDRVW--ALSVSP-LLDMFVTG 607 (775)
T ss_pred cCc---cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-------h---ccceeE--EEeecC-ccceeEec
Confidence 987 9999999999999999999999999999999999877655 3 999999 589998 88899999
Q ss_pred eeCCcEEEEccCCCC
Q 001343 1049 LTDGSVKVMEPSESE 1063 (1096)
Q Consensus 1049 ~~dg~i~vW~v~~~~ 1063 (1096)
+.||.|.+|.=.+.+
T Consensus 608 g~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 608 GGDGRIIFWKDVTEE 622 (775)
T ss_pred CCCeEEEEeecCcHH
Confidence 999999999866644
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-56 Score=473.81 Aligned_cols=564 Identities=13% Similarity=0.212 Sum_probs=460.4
Q ss_pred eeecCCCCcce-EEeec--CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccc
Q 001343 327 TWSLDDLPRTV-AVSLH--QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (1096)
Q Consensus 327 ~~~~~~~~~~~-~~~l~--h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1096)
+...+..++.. +.... ..+.+++++.+||+. +|++++....+++|++.+|+.++. .+
T Consensus 42 Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs-------------------wK 101 (775)
T KOG0319|consen 42 VIIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS-------------------WK 101 (775)
T ss_pred EEEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh-------------------Hh
Confidence 44455555555 33322 567899999999998 699999999999999999987753 34
Q ss_pred c-CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-
Q 001343 404 D-VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1096)
Q Consensus 404 ~-h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd- 481 (1096)
. |+++|.-++|+|.|..|++|+.|+.|+|||+..+.+.. .|.||.+.|..+.|.|+-.+..|++|+.|+++++||
T Consensus 102 a~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl 178 (775)
T KOG0319|consen 102 AIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNL 178 (775)
T ss_pred hccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEEc
Confidence 4 99999999999999999999999999999999988877 689999999999999988765799999999999999
Q ss_pred cCC-ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCC-----CCEEEE
Q 001343 482 LSG-RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-----GSRLFS 555 (1096)
Q Consensus 482 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-----~~~l~~ 555 (1096)
.+. .++..+..|.+.|+++++.+ |+..+++++.|..|.+||+...+......... .+-++.+-++ |.++++
T Consensus 179 ~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye-~~E~vv~l~~~~~~~~~~~~T 255 (775)
T KOG0319|consen 179 NDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYE-SLESVVRLREELGGKGEYIIT 255 (775)
T ss_pred ccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheechhh-heeeEEEechhcCCcceEEEE
Confidence 534 35888899999999999976 67899999999999999997666555544332 4666666666 668888
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEE
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1096)
.+. ++.+++||.++++++..........+..+...+....++..+.|..+.+||.++.++...+.+... .|.++
T Consensus 256 aG~----~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~nd--EI~Dm 329 (775)
T KOG0319|consen 256 AGG----SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYND--EILDM 329 (775)
T ss_pred ecC----CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCch--hheee
Confidence 886 999999999999887665544333455566666666777888889999999999999988887765 88888
Q ss_pred EE-eCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCc
Q 001343 636 RF-SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPI 714 (1096)
Q Consensus 636 ~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~ 714 (1096)
.| .|+.++||+++..+.+++|+..+.. ...+.+|... |.++..
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~--c~ii~GH~e~-----vlSL~~----------------------------- 373 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSY--CQIIPGHTEA-----VLSLDV----------------------------- 373 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCc--eEEEeCchhh-----eeeeee-----------------------------
Confidence 87 4577999999999999999887762 2366777554 223332
Q ss_pred ccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCc-eEEEeecCCeEEEeec
Q 001343 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV-GLLALGSNGVQKLWKW 793 (1096)
Q Consensus 715 ~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~v~vw~~ 793 (1096)
..+|-++++++.|.++++|.+++ +.+....+....+|.+.|.+++++..+. .|++++.|.++++|++
T Consensus 374 --------~~~g~llat~sKD~svilWr~~~----~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l 441 (775)
T KOG0319|consen 374 --------WSSGDLLATGSKDKSVILWRLNN----NCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL 441 (775)
T ss_pred --------cccCcEEEEecCCceEEEEEecC----CcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence 12345779999999999999953 2222222222244999999999987664 5677778999999999
Q ss_pred cCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCC
Q 001343 794 HRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPP 872 (1096)
Q Consensus 794 ~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~ 872 (1096)
+....... ...+...+....|...|+|++++|+++++|||+ |.+.+||++..+....++.+|.
T Consensus 442 ~~s~~~~~----------------~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~ 505 (775)
T KOG0319|consen 442 PKSKETAF----------------PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHT 505 (775)
T ss_pred CCcccccc----------------cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCc
Confidence 76211000 000100111124999999999999999999999 7889999999999999999999
Q ss_pred CCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Eec
Q 001343 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHE 951 (1096)
Q Consensus 873 ~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d 951 (1096)
..|+++.|+| ..+.++|++.|++|+||.+++.+ |+++++||.. .|..+.|-.+|+.|++ +.|
T Consensus 506 RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fS---------------ClkT~eGH~~-aVlra~F~~~~~qliS~~ad 568 (775)
T KOG0319|consen 506 RGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFS---------------CLKTFEGHTS-AVLRASFIRNGKQLISAGAD 568 (775)
T ss_pred cceEEEEecc-ccceeEeccCCceEEEEEeccce---------------eeeeecCccc-eeEeeeeeeCCcEEEeccCC
Confidence 9999999999 89999999999999999999998 8899999998 9999999999999999 899
Q ss_pred ceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCC
Q 001343 952 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1006 (1096)
Q Consensus 952 ~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~ 1006 (1096)
|.+++|++++++|+.++..| ++.|++++.++++.++++|+.||.|.+|.=.+
T Consensus 569 GliKlWnikt~eC~~tlD~H---~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 569 GLIKLWNIKTNECEMTLDAH---NDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred CcEEEEeccchhhhhhhhhc---cceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 99999999999999999886 99999999999999999999999999998544
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-50 Score=414.30 Aligned_cols=561 Identities=16% Similarity=0.255 Sum_probs=440.2
Q ss_pred CCCceeecCCCce-eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccc
Q 001343 314 SAEEVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAA 392 (1096)
Q Consensus 314 ~~~~v~~~~~~~~-~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 392 (1096)
..+.+.|+.+..- +..++.+.. +..-.+|...|+-..|||.|- ++|+|...|+|+|||....+.+...+
T Consensus 29 kgd~ilY~nGksv~ir~i~~~~~-~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKne-------- 98 (603)
T KOG0318|consen 29 KGDNILYTNGKSVIIRNIDNPAS-VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNE-------- 98 (603)
T ss_pred CCCeEEEeCCCEEEEEECCCccc-eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeee--------
Confidence 3556777766544 444444433 333345899999999999998 79999999999999998755553322
Q ss_pred cCccccccccccCCCCEEEEEEcCCCCEEEEEECC----CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEE
Q 001343 393 CSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCV 468 (1096)
Q Consensus 393 ~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l 468 (1096)
+.--.++|..|+|++|++.|++.+.. |.+.+|| +|..+. ++.||...|+++.|-|.... .+
T Consensus 99 ---------f~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri 163 (603)
T KOG0318|consen 99 ---------FQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RI 163 (603)
T ss_pred ---------eeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EE
Confidence 33356799999999999999877653 3455565 554455 68899999999999998876 89
Q ss_pred EEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe---CCCCcEEEE
Q 001343 469 VTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTM 544 (1096)
Q Consensus 469 ~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l 544 (1096)
+||++|++|.+|+ ..-+...+++.|...|+++.|+| ||.++++++.||++.+||=.+++.+..+. .|.+.|.++
T Consensus 164 ~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfal 241 (603)
T KOG0318|consen 164 ATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFAL 241 (603)
T ss_pred EeccCCCeEEEeeCCCeeeeecccccccceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEE
Confidence 9999999999999 77788888999999999999977 67899999999999999999999998887 788899999
Q ss_pred EEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc---cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEE
Q 001343 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (1096)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1096)
+|+||++.+++++. |.+++|||+.+.++++++..... ..+. +-|. +..|++.+.+|.|.+++......+.
T Consensus 242 sWsPDs~~~~T~Sa----Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG-~lWq--kd~lItVSl~G~in~ln~~d~~~~~ 314 (603)
T KOG0318|consen 242 SWSPDSTQFLTVSA----DKTIKIWDVSTNSLVSTWPMGSTVEDQQVG-CLWQ--KDHLITVSLSGTINYLNPSDPSVLK 314 (603)
T ss_pred EECCCCceEEEecC----CceEEEEEeeccceEEEeecCCchhceEEE-EEEe--CCeEEEEEcCcEEEEecccCCChhh
Confidence 99999999999997 99999999999999999875433 2333 4453 6789999999999999999999999
Q ss_pred EeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCce
Q 001343 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANC 701 (1096)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~ 701 (1096)
.+.+|.. .|+++..+|++.+|++|+.||.|.-|+..++...
T Consensus 315 ~i~GHnK--~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~------------------------------------- 355 (603)
T KOG0318|consen 315 VISGHNK--SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD------------------------------------- 355 (603)
T ss_pred eeccccc--ceeEEEEcCCCCEEEeeccCceEEEEecCCcccc-------------------------------------
Confidence 9998876 8999999999999999999999999998776110
Q ss_pred eEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEE
Q 001343 702 KVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLA 781 (1096)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 781 (1096)
++.| ..|...|.+++.+..+. +++
T Consensus 356 ------------------------------------------------------~~~g-~~h~nqI~~~~~~~~~~-~~t 379 (603)
T KOG0318|consen 356 ------------------------------------------------------RLAG-KGHTNQIKGMAASESGE-LFT 379 (603)
T ss_pred ------------------------------------------------------cccc-ccccceEEEEeecCCCc-EEE
Confidence 0000 11788888888887665 889
Q ss_pred eecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEccc
Q 001343 782 LGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMT 861 (1096)
Q Consensus 782 ~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~ 861 (1096)
.+.|.++++.++......... .+ .+ ...-.+++..+||.+++.+.++.|.+..-.+
T Consensus 380 ~g~Dd~l~~~~~~~~~~t~~~-----------------~~--~l-----g~QP~~lav~~d~~~avv~~~~~iv~l~~~~ 435 (603)
T KOG0318|consen 380 IGWDDTLRVISLKDNGYTKSE-----------------VV--KL-----GSQPKGLAVLSDGGTAVVACISDIVLLQDQT 435 (603)
T ss_pred EecCCeEEEEecccCcccccc-----------------ee--ec-----CCCceeEEEcCCCCEEEEEecCcEEEEecCC
Confidence 999999999877443221100 00 11 2223378999998777777766666555222
Q ss_pred ceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEec
Q 001343 862 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA 941 (1096)
Q Consensus 862 ~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~ 941 (1096)
+ +.+.. -.-...+++++| ++..+++|+.||.|+||.+..+.++ .......|.. +++++++||
T Consensus 436 ~--~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~-------------ee~~~~~h~a-~iT~vaySp 497 (603)
T KOG0318|consen 436 K--VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELK-------------EEAKLLEHRA-AITDVAYSP 497 (603)
T ss_pred c--ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCccc-------------ceeeeecccC-CceEEEECC
Confidence 2 22221 234577899999 9999999999999999999987611 1223344554 999999999
Q ss_pred CCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccC
Q 001343 942 DQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLS 1020 (1096)
Q Consensus 942 dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 1020 (1096)
|+.+||+ ...+.+.+||+.+.+.....-.-| .+.|.+++|+|+.+++|+|+.|-+|.||+++...-... ...+
T Consensus 498 d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FH--takI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~-iknA--- 571 (603)
T KOG0318|consen 498 DGAYLAAGDASRKVVLYDVASREVKTNRWAFH--TAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHII-IKNA--- 571 (603)
T ss_pred CCcEEEEeccCCcEEEEEcccCceecceeeee--eeeEEEEEeCCCceEEEeccccceEEEEEccChhhheE-eccc---
Confidence 9999999 578999999999888633322323 99999999999999999999999999999998764422 2223
Q ss_pred CCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccC
Q 001343 1021 PSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1060 (1096)
Q Consensus 1021 ~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~ 1060 (1096)
|...|+. +.|- |...+++.++|.+|++|++.
T Consensus 572 -----H~~gVn~--v~wl--de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 572 -----HLGGVNS--VAWL--DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred -----cccCcee--EEEe--cCceEEeccCcceeEEeccc
Confidence 8888994 8997 68999999999999999974
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-47 Score=408.52 Aligned_cols=582 Identities=16% Similarity=0.235 Sum_probs=444.3
Q ss_pred CCceeecCCCce-eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeeccccc
Q 001343 315 AEEVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAAC 393 (1096)
Q Consensus 315 ~~~v~~~~~~~~-~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 393 (1096)
...|.++.+++. ++++... ......+.+...|++++.||+|. +|++....|...+-++.....++.+.
T Consensus 26 G~sviSPvGNrvsv~dLknN-~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~--------- 94 (893)
T KOG0291|consen 26 GNSVISPVGNRVSVFDLKNN-KSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFN--------- 94 (893)
T ss_pred CCEEEeccCCEEEEEEccCC-cceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEe---------
Confidence 344555555543 4444321 11223355889999999999999 66666788888888887766654321
Q ss_pred CccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCc-----cccceeecccccCEEEEEEecCCCcEEE
Q 001343 394 SLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAHVGAVNDLAFAYPNKLLCV 468 (1096)
Q Consensus 394 ~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~l~~h~~~v~~l~~s~d~~~~~l 468 (1096)
.+.+|.|+.|||||+++|+|.. +.+.||....... ....+++.+|-..|.++.|+.|.+ +|
T Consensus 95 -----------fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l 160 (893)
T KOG0291|consen 95 -----------FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LL 160 (893)
T ss_pred -----------ecCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eE
Confidence 3568999999999999998876 4899998754322 223346779999999999999999 99
Q ss_pred EEEeCCCcEEEEE-cCCc--eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC------------------
Q 001343 469 VTCGDDKLIKVWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT------------------ 527 (1096)
Q Consensus 469 ~s~s~d~~i~iwd-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~------------------ 527 (1096)
++||.|.++++|+ ...+ ..+.+.+|.++|.++.|.. +...+++.+.||.+.+|....
T Consensus 161 ~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~--~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~ 238 (893)
T KOG0291|consen 161 VTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA--NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDE 238 (893)
T ss_pred EeccccceEEEEEeccccccceEeccCCCcceEEEEecc--CcceEEEEecCceEEEEEecCCCcccccccccccccccc
Confidence 9999999999999 3333 3677899999999988855 557899999999999997761
Q ss_pred -----CCe-----e------eEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEE
Q 001343 528 -----MGS-----R------VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVV 591 (1096)
Q Consensus 528 -----~~~-----~------~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~ 591 (1096)
++. . .-+......+++.+|++..+.|+++-. .|...+|++....+++.+.-... .|..+
T Consensus 239 ~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~~-~I~t~ 313 (893)
T KOG0291|consen 239 EMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISDQ-KILTV 313 (893)
T ss_pred cccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecccc-eeeEE
Confidence 111 0 011222357999999999999999887 88999999999999999887655 88899
Q ss_pred EEeCCCCEEEEEEc-CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccC
Q 001343 592 QFDTTQNHFLAVGE-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVEN 670 (1096)
Q Consensus 592 ~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 670 (1096)
.|+..|.+++.|+. =|++.||+..+...+...++|.. .+++++++|||+++|+|++||.|++||...+ -+..++..
T Consensus 314 ~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~--~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~vTFte 390 (893)
T KOG0291|consen 314 SFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD--RITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFVTFTE 390 (893)
T ss_pred EecccCCEEEEcCCccceEEEEEeeccceeeecccccc--ceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEEEecc
Confidence 99999999999875 48999999999887777776655 9999999999999999999999999999988 67777777
Q ss_pred CCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCC
Q 001343 671 PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSG 750 (1096)
Q Consensus 671 ~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~ 750 (1096)
|+. .|+.+.|+..|+.+ ++.+-||+|+.||+.. ..
T Consensus 391 Hts-----~Vt~v~f~~~g~~l-------------------------------------lssSLDGtVRAwDlkR---Yr 425 (893)
T KOG0291|consen 391 HTS-----GVTAVQFTARGNVL-------------------------------------LSSSLDGTVRAWDLKR---YR 425 (893)
T ss_pred CCC-----ceEEEEEEecCCEE-------------------------------------EEeecCCeEEeeeecc---cc
Confidence 654 47788887766655 7778899999999974 45
Q ss_pred ceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCc
Q 001343 751 QCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNL 830 (1096)
Q Consensus 751 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~ 830 (1096)
.++.++.| ..-...|++..|.|..+.+++.|.- .|.+|+.++|+.+. .+.| |
T Consensus 426 NfRTft~P----~p~QfscvavD~sGelV~AG~~d~F---------------------~IfvWS~qTGqllD-iLsG--H 477 (893)
T KOG0291|consen 426 NFRTFTSP----EPIQFSCVAVDPSGELVCAGAQDSF---------------------EIFVWSVQTGQLLD-ILSG--H 477 (893)
T ss_pred eeeeecCC----CceeeeEEEEcCCCCEEEeeccceE---------------------EEEEEEeecCeeee-hhcC--C
Confidence 55666554 4556789999999997777776621 34556678888888 6888 9
Q ss_pred CCCeeeeeecCCCcEEEEec-CCeEEEEEcccc-eEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceee
Q 001343 831 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELC 908 (1096)
Q Consensus 831 ~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~-~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~ 908 (1096)
.++|.+++|+|+|..||+++ |.+|++||+-.. ..+.++ .+...+..++|+| ||+.|++++-||.|.+||+..+. .
T Consensus 478 EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~~~-q 554 (893)
T KOG0291|consen 478 EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRP-DGKELAVATLDGQITFFDIKEAV-Q 554 (893)
T ss_pred CCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcC-CCCeEEEEEecceEEEEEhhhce-e
Confidence 99999999999999999999 999999998443 234444 4667899999999 99999999999999999998776 2
Q ss_pred eeecccccc------ccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCC--------
Q 001343 909 VWSIDTWEK------RKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDA-------- 973 (1096)
Q Consensus 909 ~w~~~~~~~------~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~-------- 973 (1096)
.-++++-.. ..-+....-.... ...+.+.+|+||..+++ |....|+||++.++-.++.+.-.+.
T Consensus 555 ~~~IdgrkD~~~gR~~~D~~ta~~sa~~-K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~e 633 (893)
T KOG0291|consen 555 VGSIDGRKDLSGGRKETDRITAENSAKG-KTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLE 633 (893)
T ss_pred eccccchhhccccccccceeehhhcccC-CceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHH
Confidence 323333111 1111111111111 36799999999999999 8899999999987766544210000
Q ss_pred ---------------------------------------------CCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCc
Q 001343 974 ---------------------------------------------LSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1008 (1096)
Q Consensus 974 ---------------------------------------------~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~ 1008 (1096)
-.-.|.++.|||.|+-+|.++..| +.||.+++.-
T Consensus 634 fln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEG-l~IYsld~~~ 712 (893)
T KOG0291|consen 634 FLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEG-LLIYSLDTTI 712 (893)
T ss_pred HhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccc-eEEEecCCce
Confidence 012367899999999999888887 7788887654
Q ss_pred e
Q 001343 1009 L 1009 (1096)
Q Consensus 1009 ~ 1009 (1096)
+
T Consensus 713 ~ 713 (893)
T KOG0291|consen 713 L 713 (893)
T ss_pred E
Confidence 3
No 7
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-48 Score=414.22 Aligned_cols=570 Identities=15% Similarity=0.213 Sum_probs=442.2
Q ss_pred CCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 001343 354 PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLY 433 (1096)
Q Consensus 354 p~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vw 433 (1096)
..|+ ++| ++.-..|.+||+.+|+.... + +.......|+|+.-+||.-.||+|..||.|+||
T Consensus 32 ~~Gr-~va-~~a~E~vn~WdlRtge~~~~--l---------------~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif 92 (888)
T KOG0306|consen 32 GKGR-AVA-VSALEQVNIWDLRTGEIEKK--L---------------ILLKKKAEVTCLRSSDDILLLAVGYADGSVQIF 92 (888)
T ss_pred CCCc-EEE-EeccccEeEEeeecchhhhh--h---------------hhhcccceEEEeeccCCcceEEEEecCceEEee
Confidence 3577 344 34567899999999965432 0 012234689999999999999999999999999
Q ss_pred EccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEE
Q 001343 434 SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIF 512 (1096)
Q Consensus 434 d~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 512 (1096)
+..++..+. ++.||+..|+++.|...|. .|+|||.|+.|.+|| ....-+..++||...|+..-|.. +..+++
T Consensus 93 ~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~--~~~~lv 165 (888)
T KOG0306|consen 93 SLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN--GDSFLV 165 (888)
T ss_pred ccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC--CCeEEE
Confidence 999875444 6889999999999999999 899999999999999 77778899999999999988854 457999
Q ss_pred EEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC------------eeeEEE
Q 001343 513 STAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG------------TIKRTY 580 (1096)
Q Consensus 513 s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~------------~~~~~~ 580 (1096)
+.+.|+.|++||+++..+..+...|...+..+++.+ +.+++++. ++.+.+|++... +...++
T Consensus 166 S~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 166 SVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred EeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeecccccccccccceeecccee
Confidence 999999999999999999999999999999999988 67777776 899999998311 111122
Q ss_pred cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEE--------------E------------------eecCCC
Q 001343 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT--------------S------------------TDAEGG 628 (1096)
Q Consensus 581 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------~------------------~~~~~~ 628 (1096)
........-.+...++++++++-+.|..+.+|.+.+.+.+. . +.....
T Consensus 240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence 21111123335667788889999999999999886532110 0 000011
Q ss_pred CCCccEEEEeCCCC---EEEEEECCCcEEEEEcCCCccc---cccccCCCcccccCcceeEEeecCCCeEEecCCCCcee
Q 001343 629 LPNLPRLRFSKEGN---LLAVTTADNGFKILANAIGLRS---LRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK 702 (1096)
Q Consensus 629 ~~~v~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~ 702 (1096)
...+.++.|-|.+. .|+. -.++++..|.+...... ...........++.-|.+++++.+...+
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~---------- 388 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILL---------- 388 (888)
T ss_pred hhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceee----------
Confidence 23567888877543 3343 56778888887652111 1111112223345557777777665554
Q ss_pred EeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEe
Q 001343 703 VERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL 782 (1096)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 782 (1096)
++++. +.+++|+.. +.+|.. ++ ....+.+..|.|.+++++.|
T Consensus 389 ---------------------------~Sga~-~SikiWn~~----t~kciR-Ti-----~~~y~l~~~Fvpgd~~Iv~G 430 (888)
T KOG0306|consen 389 ---------------------------ASGAG-ESIKIWNRD----TLKCIR-TI-----TCGYILASKFVPGDRYIVLG 430 (888)
T ss_pred ---------------------------eecCC-CcEEEEEcc----CcceeE-Ee-----ccccEEEEEecCCCceEEEe
Confidence 33332 889999987 566665 33 34589999999999999999
Q ss_pred ecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEccc
Q 001343 783 GSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT 861 (1096)
Q Consensus 783 ~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~ 861 (1096)
..+|.+.+|++.... .+. +.+ +|.+.|++++.+||++.+++|+ |.+|++||..-
T Consensus 431 ~k~Gel~vfdlaS~~----------------------l~E-ti~--AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l 485 (888)
T KOG0306|consen 431 TKNGELQVFDLASAS----------------------LVE-TIR--AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKL 485 (888)
T ss_pred ccCCceEEEEeehhh----------------------hhh-hhh--ccccceeeeeecCCCCceEEecCCcEEEEEeEEE
Confidence 999999999974422 121 222 3999999999999999999999 89999999731
Q ss_pred -----ceEEEeec-------CCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCC
Q 001343 862 -----FKVMTTFM-------SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGK 929 (1096)
Q Consensus 862 -----~~~~~~~~-------~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 929 (1096)
|...+.+. .-...|.|+.+|| |+++|+++--|.+|+||-+++-+ +.-.+.||
T Consensus 486 ~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlK---------------FflsLYGH 549 (888)
T KOG0306|consen 486 VVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLK---------------FFLSLYGH 549 (888)
T ss_pred EeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEeccee---------------eeeeeccc
Confidence 22211122 2246789999999 99999999999999999999877 66789999
Q ss_pred CCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCc
Q 001343 930 TPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1008 (1096)
Q Consensus 930 ~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~ 1008 (1096)
.- +|.++..|||++.+++ +.|+.|+||-++-|.|-+.+..| .+.|.++.|-|+..++++++.|+.|+-||-+.-+
T Consensus 550 kL-PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH---dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe 625 (888)
T KOG0306|consen 550 KL-PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH---DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE 625 (888)
T ss_pred cc-ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc---cCceeEEEEcccceeEEEecCcceEEeechhhhh
Confidence 98 9999999999999999 89999999999999999999886 8999999999999999999999999999988877
Q ss_pred eeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCC
Q 001343 1009 LRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1062 (1096)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~ 1062 (1096)
.+..+. + |...|+ |++.+| +|.+++++|.|.+|++|+-.+.
T Consensus 626 ~iq~L~-------~---H~~ev~--cLav~~-~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 626 EIQKLD-------G---HHSEVW--CLAVSP-NGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred hheeec-------c---chheee--eeEEcC-CCCeEEeccCCceeEeeeccCc
Confidence 665554 3 899999 899999 9999999999999999997663
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-46 Score=400.88 Aligned_cols=536 Identities=16% Similarity=0.251 Sum_probs=424.9
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECC
Q 001343 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1096)
Q Consensus 348 ~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d 427 (1096)
-.+.|++||.. +++ ...+.|.++|+.+.+... .--.+...|.+++.||+|.+|++....
T Consensus 18 Gnl~ft~dG~s-viS-PvGNrvsv~dLknN~S~T-------------------l~~e~~~NI~~ialSp~g~lllavdE~ 76 (893)
T KOG0291|consen 18 GNLVFTKDGNS-VIS-PVGNRVSVFDLKNNKSYT-------------------LPLETRYNITRIALSPDGTLLLAVDER 76 (893)
T ss_pred CcEEECCCCCE-EEe-ccCCEEEEEEccCCccee-------------------EEeecCCceEEEEeCCCceEEEEEcCC
Confidence 34789999985 443 467899999998865432 122367789999999999999999999
Q ss_pred CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCc---------eEEEeeCCCCCeE
Q 001343 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR---------KLFNFEGHEAPVY 498 (1096)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~---------~~~~~~~~~~~v~ 498 (1096)
|...+-++.....+..+ .-+.+|.++.|||+|+ ++|.|. .+.+.||...+. ..+++.+|...|.
T Consensus 77 g~~~lvs~~~r~Vlh~f----~fk~~v~~i~fSPng~--~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~ 149 (893)
T KOG0291|consen 77 GRALLVSLLSRSVLHRF----NFKRGVGAIKFSPNGK--FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDIT 149 (893)
T ss_pred CcEEEEecccceeeEEE----eecCccceEEECCCCc--EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCcccee
Confidence 99988888775544422 2467899999999999 565554 678999983222 2356789999999
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCCe--eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC---
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--- 573 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~--- 573 (1096)
++.|+. |.++|++|+.|.++++|+++..+. ...+.+|...|.+..|..+...+++.+. +|.+.+|....
T Consensus 150 si~Ws~--DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvsk----dG~l~~W~~~~~P~ 223 (893)
T KOG0291|consen 150 SIDWSD--DSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSK----DGALFVWTCDLRPP 223 (893)
T ss_pred EEEecc--CCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEec----CceEEEEEecCCCc
Confidence 999965 778999999999999999988777 5577889999999999999999999997 99999997661
Q ss_pred --------------------Cee---------e-EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001343 574 --------------------GTI---------K-RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (1096)
Q Consensus 574 --------------------~~~---------~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1096)
++. . +.+-......+.+.+|++.-+.|++|-..|...+|.+....+++.+
T Consensus 224 ~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~L 303 (893)
T KOG0291|consen 224 ELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSL 303 (893)
T ss_pred ccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEe
Confidence 111 0 1111112246888999998899999999999999999999999999
Q ss_pred ecCCCCCCccEEEEeCCCCEEEEEECC-CcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCcee
Q 001343 624 DAEGGLPNLPRLRFSKEGNLLAVTTAD-NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK 702 (1096)
Q Consensus 624 ~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~ 702 (1096)
....+ .|..++|+..|..||.|+.. |.+.+|+..+. ..+-..++|.. .+++++++|||+++
T Consensus 304 Sis~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE-sYVlKQQgH~~-----~i~~l~YSpDgq~i---------- 365 (893)
T KOG0291|consen 304 SISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE-SYVLKQQGHSD-----RITSLAYSPDGQLI---------- 365 (893)
T ss_pred ecccc--eeeEEEecccCCEEEEcCCccceEEEEEeecc-ceeeecccccc-----ceeeEEECCCCcEE----------
Confidence 88766 89999999999999999875 89999999776 33334455533 36678877666554
Q ss_pred EeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEe
Q 001343 703 VERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL 782 (1096)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 782 (1096)
|+|+.||.|++||.. .+.|.. ++.. |.+.|+.+.|+..|+.++++
T Consensus 366 ---------------------------aTG~eDgKVKvWn~~----SgfC~v-TFte---Hts~Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 366 ---------------------------ATGAEDGKVKVWNTQ----SGFCFV-TFTE---HTSGVTAVQFTARGNVLLSS 410 (893)
T ss_pred ---------------------------EeccCCCcEEEEecc----CceEEE-Eecc---CCCceEEEEEEecCCEEEEe
Confidence 899999999999987 455655 7777 99999999999999999999
Q ss_pred ecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-C-CeEEEEEcc
Q 001343 783 GSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-G-GKISLFNMM 860 (1096)
Q Consensus 783 ~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-d-g~v~iwd~~ 860 (1096)
+-||+|+.||+.... +.. ++.. .......|++..|.|.+++.|+ | =.|+||+++
T Consensus 411 SLDGtVRAwDlkRYr----------------------NfR-Tft~-P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q 466 (893)
T KOG0291|consen 411 SLDGTVRAWDLKRYR----------------------NFR-TFTS-PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ 466 (893)
T ss_pred ecCCeEEeeeecccc----------------------eee-eecC-CCceeeeEEEEcCCCCEEEeeccceEEEEEEEee
Confidence 999999999985421 111 2221 1344567899999999999998 4 349999999
Q ss_pred cceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEe
Q 001343 861 TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFN 940 (1096)
Q Consensus 861 ~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs 940 (1096)
+|+++..+.+|.++|.+++|+| ++..|++++.|++|++||+-... ..+.+++-.. .+..++|+
T Consensus 467 TGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~--------------~~vEtl~i~s--dvl~vsfr 529 (893)
T KOG0291|consen 467 TGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSS--------------GTVETLEIRS--DVLAVSFR 529 (893)
T ss_pred cCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccC--------------ceeeeEeecc--ceeEEEEc
Confidence 9999999999999999999999 89999999999999999997653 0122222222 78999999
Q ss_pred cCCcEEEE-EecceEEEEEcccceecccccc-----------------CCCCCCCceEEEEeeCCcEEEEEecCCcEEEE
Q 001343 941 ADQVRMLV-VHETQLAIYDASKMERIRQWTP-----------------QDALSAPISCAVYSCNSQLVFATFCDGNIGVF 1002 (1096)
Q Consensus 941 ~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~-----------------~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vw 1002 (1096)
|||+.|++ .-||.|.+||+..+..+..+.+ ..+.....+.+++|+||++|++|+....|++|
T Consensus 530 PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY 609 (893)
T KOG0291|consen 530 PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIY 609 (893)
T ss_pred CCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEE
Confidence 99999999 7899999999987665433211 01124678899999999999999999999999
Q ss_pred ecCCCceeE
Q 001343 1003 DADTLRLRC 1011 (1096)
Q Consensus 1003 d~~~~~~~~ 1011 (1096)
++.++-++.
T Consensus 610 ~v~~~vllk 618 (893)
T KOG0291|consen 610 DVPEGVLLK 618 (893)
T ss_pred ECchhheee
Confidence 998876444
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.1e-48 Score=411.64 Aligned_cols=568 Identities=14% Similarity=0.237 Sum_probs=439.3
Q ss_pred eeecCCCce-eeecCCCCcceEE-eecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCc
Q 001343 318 VTYSSSRHQ-TWSLDDLPRTVAV-SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSL 395 (1096)
Q Consensus 318 v~~~~~~~~-~~~~~~~~~~~~~-~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 395 (1096)
|+.+...+- +|++....-.... ....+.+|+|++-+|+.- +||+|..||.|+||+..++....+
T Consensus 37 va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t------------- 102 (888)
T KOG0306|consen 37 VAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT------------- 102 (888)
T ss_pred EEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------
Confidence 444444433 8888754322222 234557999999999987 799999999999999998876643
Q ss_pred cccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC
Q 001343 396 PFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1096)
Q Consensus 396 ~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~ 475 (1096)
+.||+.+|+++.|+..|..||+||.|+.|.+||+-...... .+.||+..|+.+-|..+.+ +++++|.|+
T Consensus 103 ------fngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs 171 (888)
T KOG0306|consen 103 ------FNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDS 171 (888)
T ss_pred ------ecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCc
Confidence 89999999999999999999999999999999997654444 5889999999999998777 899999999
Q ss_pred cEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCee-------------eEEeCCCCcE
Q 001343 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-------------VDYDAPGHWC 541 (1096)
Q Consensus 476 ~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~i 541 (1096)
.|++|| .+..|..+.-.|.+.++++++.+ +.+++++.|+.+++|++....-. .......+..
T Consensus 172 ~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~ 247 (888)
T KOG0306|consen 172 MIKFWDLETQHCFETHVDHRGEIWALVLDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGRE 247 (888)
T ss_pred eEEEEecccceeeeEEecccceEEEEEEec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCce
Confidence 999999 88999999999999999999965 58999999999999998311100 0111222345
Q ss_pred EEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeE-----------------------------------EEcCcCcc
Q 001343 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR-----------------------------------TYAGFRKK 586 (1096)
Q Consensus 542 ~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~-----------------------------------~~~~~~~~ 586 (1096)
..++..++++++++-+. |..+.++.+.+.+.+. ++.. ..
T Consensus 248 i~l~~d~s~r~~~c~g~----d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~--~~ 321 (888)
T KOG0306|consen 248 INLVTDFSDRFLVCQGA----DKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT--SA 321 (888)
T ss_pred eEEeecCcccEEEEecc----hhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec--hh
Confidence 56777788888888776 7778777776421100 0000 11
Q ss_pred ceEEEEEeCCCC---EEEEEEcCCeEEEEeCCC-Ce------EEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEE
Q 001343 587 SNGVVQFDTTQN---HFLAVGEDSQIKFWDMDN-VN------ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1096)
Q Consensus 587 ~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~-~~------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1096)
.+.++.+.|.++ .++. -.++.+..|.+.. +. .+..+...+|...|.+++++.+...+++|+. +.|++|
T Consensus 322 kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiW 399 (888)
T KOG0306|consen 322 KIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIW 399 (888)
T ss_pred heeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCC-CcEEEE
Confidence 355566666542 3333 5677888888765 21 2334555566669999999999877777654 589999
Q ss_pred EcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCC
Q 001343 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD 736 (1096)
Q Consensus 657 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg 736 (1096)
+..+. ++++++... .+-+..|-|.++ ++++|...|
T Consensus 400 n~~t~-kciRTi~~~-------y~l~~~Fvpgd~-------------------------------------~Iv~G~k~G 434 (888)
T KOG0306|consen 400 NRDTL-KCIRTITCG-------YILASKFVPGDR-------------------------------------YIVLGTKNG 434 (888)
T ss_pred EccCc-ceeEEeccc-------cEEEEEecCCCc-------------------------------------eEEEeccCC
Confidence 99888 666666542 133445544444 457777779
Q ss_pred CccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccC
Q 001343 737 KPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 816 (1096)
Q Consensus 737 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~ 816 (1096)
.+.+||+.. ..... +.+. |.+.|.+++.+||+..+++++.|.+|++|++....-.| |. +-++..+.
T Consensus 435 el~vfdlaS----~~l~E-ti~A---HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~-gt-----~~k~lsl~ 500 (888)
T KOG0306|consen 435 ELQVFDLAS----ASLVE-TIRA---HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP-GT-----QKKVLSLK 500 (888)
T ss_pred ceEEEEeeh----hhhhh-hhhc---cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC-cc-----cceeeeec
Confidence 999999873 22221 3334 99999999999999999999999999999985422211 10 00111111
Q ss_pred ccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCC
Q 001343 817 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1096)
Q Consensus 817 ~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg 895 (1096)
..+.+. -...|.|+.+||||++||++- |.+|+||-+.+.+..-++-||.-+|.|+.+|| |+++++||+.|+
T Consensus 501 ~~rtLe-------l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADK 572 (888)
T KOG0306|consen 501 HTRTLE-------LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADK 572 (888)
T ss_pred cceEEe-------ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCC
Confidence 112221 467899999999999999998 99999999999999999999999999999999 999999999999
Q ss_pred eEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCC
Q 001343 896 TIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDAL 974 (1096)
Q Consensus 896 ~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~ 974 (1096)
+|+||-++-|. |-+.+-+|.. .|.+|.|-|+...+.+ |.|+.++-||-...++++.+.+|
T Consensus 573 nVKiWGLdFGD---------------CHKS~fAHdD-Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H--- 633 (888)
T KOG0306|consen 573 NVKIWGLDFGD---------------CHKSFFAHDD-SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH--- 633 (888)
T ss_pred ceEEeccccch---------------hhhhhhcccC-ceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc---
Confidence 99999999888 7788889988 9999999999888888 89999999999999999999987
Q ss_pred CCCceEEEEeeCCcEEEEEecCCcEEEEecCCCc
Q 001343 975 SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1008 (1096)
Q Consensus 975 ~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~ 1008 (1096)
...|++++.+|+|.++++++.|.+|++|.-....
T Consensus 634 ~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 634 HSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred hheeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence 7899999999999999999999999999976543
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-50 Score=394.56 Aligned_cols=311 Identities=22% Similarity=0.344 Sum_probs=281.2
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
+|.++|.|++|+|+|+ .||+|+.|.++++||+.+...+.+ .++|..+|.|++|||||+.|
T Consensus 113 GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcvawsPDgk~i 172 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVAWSPDGKKI 172 (480)
T ss_pred CCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEEECCCcchh
Confidence 5999999999999999 599999999999999999887654 89999999999999999999
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEec-----CCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-----PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~-----d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~ 495 (1096)
|+|+.||+|++||.++|+++.. .|.+|+..|++++|.| ..+ +|++++.||+|+||| ..+.++..+.||+.
T Consensus 173 ASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~lsgHT~ 248 (480)
T KOG0271|consen 173 ASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRTLSGHTA 248 (480)
T ss_pred hccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEEeccCcc
Confidence 9999999999999999988765 6889999999999976 455 899999999999999 88999999999999
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEc-----------CCC--------------
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYS-----------ADG-------------- 550 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-----------~~~-------------- 550 (1096)
+|+|+.|- ++ .+|++|+.|++|++|+...+.....+.+|.+.|+.++.+ |.+
T Consensus 249 ~VTCvrwG--G~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al 325 (480)
T KOG0271|consen 249 SVTCVRWG--GE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKAL 325 (480)
T ss_pred ceEEEEEc--CC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHH
Confidence 99999983 33 499999999999999999988899999999999999987 223
Q ss_pred -----------CEEEEEeeccCCCCeEEEEeCCC-CeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe
Q 001343 551 -----------SRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 551 -----------~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1096)
..+++++. |..+.+|+... .+++..+.+|.. .|+.+.|+||++++++++.|..|++|+.++|+
T Consensus 326 ~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk 400 (480)
T KOG0271|consen 326 ERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLWDGRTGK 400 (480)
T ss_pred HHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeeeeCCCcc
Confidence 34889886 99999999754 458888999988 89999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeE
Q 001343 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 619 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
.+..+++|-. .|+.++|+.|.++|++|+.|.++++|++.+. +....+.+|.++ |.++.++|||..+
T Consensus 401 ~lasfRGHv~--~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DLpGh~DE-----Vf~vDwspDG~rV 466 (480)
T KOG0271|consen 401 FLASFRGHVA--AVYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQDLPGHADE-----VFAVDWSPDGQRV 466 (480)
T ss_pred hhhhhhhccc--eeEEEEeccCccEEEEcCCCceEEEEEeeee-eecccCCCCCce-----EEEEEecCCCcee
Confidence 9999998866 9999999999999999999999999999887 778888888776 5578887776665
No 11
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.3e-45 Score=373.68 Aligned_cols=530 Identities=14% Similarity=0.222 Sum_probs=415.3
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCe
Q 001343 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (1096)
Q Consensus 350 v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~ 429 (1096)
+--.|.|..++.+ ....|.+-++++..... ++.+|...++-..|||.|.|+|+|...|.
T Consensus 24 ig~dpkgd~ilY~--nGksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG~ 82 (603)
T KOG0318|consen 24 IGGDPKGDNILYT--NGKSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSGK 82 (603)
T ss_pred eccCCCCCeEEEe--CCCEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcCc
Confidence 3445677767765 45688888888766543 37889999999999999999999999999
Q ss_pred EEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC----CcEEEEEcCCceEEEeeCCCCCeEEEEeeec
Q 001343 430 IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGRKLFNFEGHEAPVYSICPHHK 505 (1096)
Q Consensus 430 i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 505 (1096)
|+|||....+.+. ..+++.-.++|..++|+.|++ .|++.++. |.+.+|| +|..+-.+.||...|+++.|-|+
T Consensus 83 vRIWdtt~~~hiL-Knef~v~aG~I~Di~Wd~ds~--RI~avGEGrerfg~~F~~D-SG~SvGei~GhSr~ins~~~Kps 158 (603)
T KOG0318|consen 83 VRIWDTTQKEHIL-KNEFQVLAGPIKDISWDFDSK--RIAAVGEGRERFGHVFLWD-SGNSVGEITGHSRRINSVDFKPS 158 (603)
T ss_pred EEEEeccCcceee-eeeeeecccccccceeCCCCc--EEEEEecCccceeEEEEec-CCCccceeeccceeEeeeeccCC
Confidence 9999987633222 225777889999999999999 56655533 3455664 56667789999999999999886
Q ss_pred CCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEc---C
Q 001343 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA---G 582 (1096)
Q Consensus 506 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~---~ 582 (1096)
.. -.+++|+.|++|.+|+=...+....+..|..-|.++.|+|||.++++.+. |+.+++||-.+|+.+..+. +
T Consensus 159 RP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~a 233 (603)
T KOG0318|consen 159 RP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDA 233 (603)
T ss_pred Cc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCC
Confidence 43 67999999999999976666666777888889999999999999999997 9999999999999999998 7
Q ss_pred cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCC-CCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 583 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
|.+ .|.+++|+||+..+++++.|.+++|||+.+.+++.++...... ..-..+.|- ...|++.+.+|.|.+++...+
T Consensus 234 HkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 234 HKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred ccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC
Confidence 777 8999999999999999999999999999999999888755431 122345554 557888888898888877554
Q ss_pred ccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccce
Q 001343 662 LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPW 741 (1096)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw 741 (1096)
. .++
T Consensus 311 ~-~~~--------------------------------------------------------------------------- 314 (603)
T KOG0318|consen 311 S-VLK--------------------------------------------------------------------------- 314 (603)
T ss_pred C-hhh---------------------------------------------------------------------------
Confidence 1 111
Q ss_pred eeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccc
Q 001343 742 QLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLM 821 (1096)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~ 821 (1096)
.+.| |...|+++..++++++|++++.||.|.-|+... |..-
T Consensus 315 --------------~i~G---HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~----------------------g~~~ 355 (603)
T KOG0318|consen 315 --------------VISG---HNKSITALTVSPDGKTIYSGSYDGHINSWDSGS----------------------GTSD 355 (603)
T ss_pred --------------eecc---cccceeEEEEcCCCCEEEeeccCceEEEEecCC----------------------cccc
Confidence 2334 889999999999999999999999999998643 2222
Q ss_pred cccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEe--ecCCCCCeeEEEEecCCCcEEEEeeCCCeEEE
Q 001343 822 ANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 899 (1096)
Q Consensus 822 ~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~--~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~i 899 (1096)
. +.|..|...|.+++.+..+.++.++-|+++++.++.....-.. ++- .....+++..+ ++.+++.++.++.+.+
T Consensus 356 ~--~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l-g~QP~~lav~~-d~~~avv~~~~~iv~l 431 (603)
T KOG0318|consen 356 R--LAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKL-GSQPKGLAVLS-DGGTAVVACISDIVLL 431 (603)
T ss_pred c--cccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeec-CCCceeEEEcC-CCCEEEEEecCcEEEE
Confidence 2 3333499999999999888888888899999999854433222 121 22334888888 7777777777765555
Q ss_pred EeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccc-cccCCCCCCC
Q 001343 900 YNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQ-WTPQDALSAP 977 (1096)
Q Consensus 900 w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~ 977 (1096)
=+...-. ...-+ -...+++++|++..+++ +.|+.|+||.+..++.... ....| .++
T Consensus 432 ~~~~~~~-----------------~~~~~---y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h--~a~ 489 (603)
T KOG0318|consen 432 QDQTKVS-----------------SIPIG---YESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEH--RAA 489 (603)
T ss_pred ecCCcce-----------------eeccc---cccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecc--cCC
Confidence 4343321 11112 16789999999999999 8999999999988765433 22333 999
Q ss_pred ceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEE
Q 001343 978 ISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVM 1057 (1096)
Q Consensus 978 i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW 1057 (1096)
|++++||||+.|||++...+.|.+||+.+.+... -.-.. |+..|. |++|+| +..++|||+-|-+|.||
T Consensus 490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~-~~w~F--------HtakI~--~~aWsP-~n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT-NRWAF--------HTAKIN--CVAWSP-NNKLVATGSLDTNVIIY 557 (603)
T ss_pred ceEEEECCCCcEEEEeccCCcEEEEEcccCceec-ceeee--------eeeeEE--EEEeCC-CceEEEeccccceEEEE
Confidence 9999999999999999999999999999887521 11111 888999 799999 99999999999999999
Q ss_pred ccCCCCCc
Q 001343 1058 EPSESEGK 1065 (1096)
Q Consensus 1058 ~v~~~~~~ 1065 (1096)
++....+.
T Consensus 558 sv~kP~~~ 565 (603)
T KOG0318|consen 558 SVKKPAKH 565 (603)
T ss_pred EccChhhh
Confidence 99887643
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-48 Score=383.67 Aligned_cols=364 Identities=18% Similarity=0.261 Sum_probs=299.5
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
.+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLW 184 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEe
Confidence 478999999999999999999999999999999999977666 6889999999999999999 89999999999999
Q ss_pred E-cCCceE-EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 481 E-LSGRKL-FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 481 d-~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
| .+|+++ ..+.+|...|++++|.|-. ..|..+++++++.
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~sk 225 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSSK 225 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceecccC
Confidence 9 777665 7799999999999997632 1255667777776
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
|+.++|||+..+.++..+.+|.. .|+|++|..+ .++++|+.|++|++|+...|.+...+.+|.+ .|+.++.+
T Consensus 226 ----Dg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lals 297 (480)
T KOG0271|consen 226 ----DGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALS 297 (480)
T ss_pred ----CCCEEEEEccCceEEEEeccCcc-ceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccch--heeeeecc
Confidence 88888899888999999999998 9999999765 5899999999999999999999999999988 89999987
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCC
Q 001343 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~ 718 (1096)
.+- .|-+|..| |.|+..
T Consensus 298 Tdy-~LRtgaf~------------------------------------~t~~~~-------------------------- 314 (480)
T KOG0271|consen 298 TDY-VLRTGAFD------------------------------------HTGRKP-------------------------- 314 (480)
T ss_pred chh-hhhccccc------------------------------------cccccC--------------------------
Confidence 652 12222211 111110
Q ss_pred CCccCCCCCCccccCCC--CCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCC
Q 001343 719 DPTSRSMDKPRTVDDVT--DKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRN 796 (1096)
Q Consensus 719 ~~~~s~d~~~l~s~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~ 796 (1096)
-+.++. ....-|+.. .-..+..+++++.|.++.+|+-.
T Consensus 315 -----------~~~se~~~~Al~rY~~~---------------------------~~~~~erlVSgsDd~tlflW~p~-- 354 (480)
T KOG0271|consen 315 -----------KSFSEEQKKALERYEAV---------------------------LKDSGERLVSGSDDFTLFLWNPF-- 354 (480)
T ss_pred -----------CChHHHHHHHHHHHHHh---------------------------hccCcceeEEecCCceEEEeccc--
Confidence 000000 000001100 00123568899999999999842
Q ss_pred ccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCe
Q 001343 797 EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAS 875 (1096)
Q Consensus 797 ~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i 875 (1096)
.+.+++. .+.| |...|..+.||||++++|+|+ |..|++|+.++|+.+.+|++|-+.|
T Consensus 355 -------------------~~kkpi~-rmtg--Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~V 412 (480)
T KOG0271|consen 355 -------------------KSKKPIT-RMTG--HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAV 412 (480)
T ss_pred -------------------ccccchh-hhhc--hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcccee
Confidence 2222333 4556 999999999999999999999 8999999999999999999999999
Q ss_pred eEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceE
Q 001343 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQL 954 (1096)
Q Consensus 876 ~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i 954 (1096)
..++|+. |.++|++|+.|.++++|++.+.+ ..+.+.||.. +|.++.|+|||..+++ +.|+.+
T Consensus 413 Yqvawsa-DsRLlVS~SkDsTLKvw~V~tkK---------------l~~DLpGh~D-EVf~vDwspDG~rV~sggkdkv~ 475 (480)
T KOG0271|consen 413 YQVAWSA-DSRLLVSGSKDSTLKVWDVRTKK---------------LKQDLPGHAD-EVFAVDWSPDGQRVASGGKDKVL 475 (480)
T ss_pred EEEEecc-CccEEEEcCCCceEEEEEeeeee---------------ecccCCCCCc-eEEEEEecCCCceeecCCCceEE
Confidence 9999999 99999999999999999999987 6678999998 9999999999999999 899999
Q ss_pred EEEE
Q 001343 955 AIYD 958 (1096)
Q Consensus 955 ~iwd 958 (1096)
++|.
T Consensus 476 ~lw~ 479 (480)
T KOG0271|consen 476 RLWR 479 (480)
T ss_pred Eeec
Confidence 9994
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=6.3e-41 Score=353.55 Aligned_cols=570 Identities=12% Similarity=0.145 Sum_probs=383.6
Q ss_pred CCCceEEEEEcCCCCcEEEEEe--CCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 420 (1096)
|..+++|++||++|+ |+|+|- ....++||++.....+.. |..|+-.|+|++|+|.++|
T Consensus 77 sRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence 677999999999999 699984 456899999988776543 7889999999999999999
Q ss_pred EEEEEC--CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEE---eeCCC
Q 001343 421 VGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN---FEGHE 494 (1096)
Q Consensus 421 l~s~~~--dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~---~~~~~ 494 (1096)
+++.+. |-.|.+||+....... -..-...|..++|+.||. +++|.+ ...|++|. ..++.... +.+..
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchh
Confidence 998765 4467888876543222 223456799999999999 888887 78999999 44432111 11111
Q ss_pred CCeEEEEeeecCCCcEEEEEE-------------CCCeEEEEEcCCCCeeeEE-eCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 495 APVYSICPHHKENIQFIFSTA-------------IDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~-------------~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
.-.-.+.+ ..++++++ ..|.+.-|.-+ ..+-++ ........|++++ .+++++++.
T Consensus 210 ~~lg~lr~-----n~f~avaCg~gicAestfait~qGhLvEFSsR--RLLDKWVqcRTTnAnCIcVs--~r~I~cgCa-- 278 (1080)
T KOG1408|consen 210 YFLGNLRF-----NEFLAVACGVGICAESTFAITAQGHLVEFSSR--RLLDKWVQCRTTNANCICVS--SRLIACGCA-- 278 (1080)
T ss_pred hhcccccc-----chhhhhhhcCcccccceEEEecccceeeechh--hhhhhhhhhhccccceeeee--cceEEEeec--
Confidence 11111111 11222211 22333222111 110000 0112234455554 568888887
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcC--------------------c---cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFR--------------------K---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~--------------------~---~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1096)
++.|++|+..+-....++...+ . ...-.+.|++....+.+...|..++|||++.-
T Consensus 279 --~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 279 --KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDV 356 (1080)
T ss_pred --cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccc
Confidence 9999999988755544433110 0 11234678888899999999999999999874
Q ss_pred eEEEEe-ecCCCCCCccEEEEeCC-----------CCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEe
Q 001343 618 NILTST-DAEGGLPNLPRLRFSKE-----------GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVAL 685 (1096)
Q Consensus 618 ~~~~~~-~~~~~~~~v~~~~~s~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 685 (1096)
..+... ....|...|+++.--|. ...+.+++.|++|++|++..+. .-..+...... .....+.
T Consensus 357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ct-nn~vyrRNils---~~l~ki~- 431 (1080)
T KOG1408|consen 357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCT-NNQVYRRNILS---ANLSKIP- 431 (1080)
T ss_pred ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccc-ccceeecccch---hhhhcCc-
Confidence 433221 11122224555443331 1358899999999999997641 11111100000 0000000
Q ss_pred ecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcc
Q 001343 686 KVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSS 765 (1096)
Q Consensus 686 s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1096)
..|+..-+. .|...-++|-. ....-+ ...
T Consensus 432 -------------------------------------y~d~~~q~~--~d~~~~~fdka---------~~s~~d---~r~ 460 (1080)
T KOG1408|consen 432 -------------------------------------YEDSTQQIM--HDASAGIFDKA---------LVSTCD---SRF 460 (1080)
T ss_pred -------------------------------------cccCchhhh--hhccCCccccc---------chhhcC---ccc
Confidence 001100000 00011112211 001112 566
Q ss_pred cEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCC---
Q 001343 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN--- 842 (1096)
Q Consensus 766 ~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~d--- 842 (1096)
.+++++.+|+|++|++|..-|.+++|++..- +.+. .+. +|...|.|+.||..
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l----------------------~~~~-~~e--AHesEilcLeyS~p~~~ 515 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQEL----------------------EYTC-FME--AHESEILCLEYSFPVLT 515 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehhh----------------------hhhh-hee--cccceeEEEeecCchhh
Confidence 8999999999999999999999999997431 1111 233 39999999999853
Q ss_pred CcEEEEec-CCeEEEEEc-ccceEEEeecCCCCCeeEEEEecCCC--cEEEEeeCCCeEEEEeeccceeeeeeccccccc
Q 001343 843 DSYVMSAT-GGKISLFNM-MTFKVMTTFMSPPPASTFLAFHPQDN--NIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKR 918 (1096)
Q Consensus 843 g~~la~~~-dg~v~iwd~-~~~~~~~~~~~h~~~i~~l~~s~~d~--~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~ 918 (1096)
.++||+++ |.-|.|||+ ++..++.++.+|...|+++.|.- .| ..+++++.|+.|.+=-.....
T Consensus 516 ~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~------------ 582 (1080)
T KOG1408|consen 516 NKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKAS------------ 582 (1080)
T ss_pred hHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-cCCceEEEeccCchhhheehhcccc------------
Confidence 38999999 677999998 45677899999999999999987 45 789999999876543222111
Q ss_pred cceeeecCCCCCC---CCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEe
Q 001343 919 KSVTIHIPAGKTP---TGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF 994 (1096)
Q Consensus 919 ~~~~~~~~~~~~~---~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~ 994 (1096)
.-...+.++.. +.+.++++.|..+++++ +.|+.|+|||+++|+..+.+.+.+.+.+....+...|.|.|||+.+
T Consensus 583 --~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc 660 (1080)
T KOG1408|consen 583 --SGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC 660 (1080)
T ss_pred --CceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEee
Confidence 00111111111 46788999999999999 8999999999999999999998887788999999999999999999
Q ss_pred cCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCC
Q 001343 995 CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1061 (1096)
Q Consensus 995 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~ 1061 (1096)
.|.++.++|+.+|++...+. | |++.|+ .+.|.+ |-+.|++.+.||+|+||.+..
T Consensus 661 sdktl~~~Df~sgEcvA~m~-------G---HsE~VT--G~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 661 SDKTLCFVDFVSGECVAQMT-------G---HSEAVT--GVKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cCCceEEEEeccchhhhhhc-------C---cchhee--eeeecc-cchhheeecCCceEEEEECch
Confidence 99999999999999877655 5 999999 699999 999999999999999999865
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.5e-41 Score=365.43 Aligned_cols=275 Identities=19% Similarity=0.299 Sum_probs=241.9
Q ss_pred ecCCCCcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeec---cccee---------ecccccCc
Q 001343 329 SLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS---KPFKI---------WDMAACSL 395 (1096)
Q Consensus 329 ~~~~~~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~---~~~~~---------~~~~~~~~ 395 (1096)
+.+.+|..+..++. ....|+|+.|++|++ ++|.|..|..|++|.+...+...- ..+.- .++.....
T Consensus 362 ~~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~ 440 (707)
T KOG0263|consen 362 GRNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDS 440 (707)
T ss_pred CCCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccC
Confidence 34567888888887 567899999999999 899999999999999985432110 00000 12222223
Q ss_pred cccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC
Q 001343 396 PFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1096)
Q Consensus 396 ~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~ 475 (1096)
......+.||.++|..+.|+|+.++|++++.|++|++|.+.+..++- .+.||..+|+++.|+|-|- ++||+|.|+
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~ 515 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQ 515 (707)
T ss_pred CceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCc
Confidence 33344589999999999999999999999999999999999977665 5779999999999999998 999999999
Q ss_pred cEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEE
Q 001343 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 476 ~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 554 (1096)
+.++|. ....+++.+.+|-+.|.|+.||| +..++++||.|.++|+||+.++..+..+.+|..+|.+++|||+|++|+
T Consensus 516 tArLWs~d~~~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 516 TARLWSTDHNKPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLA 593 (707)
T ss_pred eeeeeecccCCchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEe
Confidence 999999 88999999999999999999998 668999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
+|+. ++.|.+||+.+++.+..+.+|.+ .+.++.|+.+|..|++|+.|++|++||+..
T Consensus 594 Sg~e----d~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 594 SGDE----DGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred eccc----CCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9997 99999999999999999999966 999999999999999999999999999865
No 15
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-41 Score=337.59 Aligned_cols=283 Identities=17% Similarity=0.269 Sum_probs=266.6
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC--C
Q 001343 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--G 418 (1096)
Q Consensus 341 l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--~ 418 (1096)
++.+.+|..+.||+|++ +||||+-+|.++||+..+...+.. |.||.+.|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCc
Confidence 34677999999999999 799999999999999998866643 9999999999999996 6
Q ss_pred CEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCe
Q 001343 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (1096)
Q Consensus 419 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v 497 (1096)
..||+|+.||++++|++++...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++|| .++..+...+||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999876666 6889999999999999999 999999999999999 8888888899999999
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
.+++|++ ||.++++|+.|..-+|||++++.++..+.+|..+|.+++|+|+|..+++|+. |++++|||++....+
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence 9999987 7789999999999999999999999999999999999999999999999997 999999999999999
Q ss_pred EEEcCcCccceEEEEEeC-CCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEE
Q 001343 578 RTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1096)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1096)
.++.+|.+ .|+.++|+| .|.+|++++.|++++||...+.++++.+.+|.. .|.++.+++++..+++++.|.++++|
T Consensus 381 y~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 381 YTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred eecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeec
Confidence 99999998 899999998 778999999999999999999999999999877 89999999999999999999999999
Q ss_pred E
Q 001343 657 A 657 (1096)
Q Consensus 657 d 657 (1096)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 5
No 16
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.5e-37 Score=327.33 Aligned_cols=645 Identities=14% Similarity=0.171 Sum_probs=408.6
Q ss_pred CceeecCCCce-eeecCCCCcceEEeec-CCCceEEEEEcCCCC--cEEEEEeCCCeEEEEecCCCCeeecccceeeccc
Q 001343 316 EEVTYSSSRHQ-TWSLDDLPRTVAVSLH-QGSTVISMDFHPSHQ--TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMA 391 (1096)
Q Consensus 316 ~~v~~~~~~~~-~~~~~~~~~~~~~~l~-h~~~V~~v~fsp~g~--~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~ 391 (1096)
.-++|..+..- +|+.... ....++. |..+|+|+.|-|+.+ -++++|+.|+.|++|.+........
T Consensus 26 ~~vafGa~~~Iav~dp~k~--~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i--------- 94 (764)
T KOG1063|consen 26 GLVAFGAGPAIAVADPEKI--LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKI--------- 94 (764)
T ss_pred ceEEecCCceEEEeCcccc--eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEE---------
Confidence 34666665543 6665543 3444555 999999999999876 1488999999999999984333321
Q ss_pred ccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccc--cCEEEEEEecCCCcEEEE
Q 001343 392 ACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHV--GAVNDLAFAYPNKLLCVV 469 (1096)
Q Consensus 392 ~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~--~~v~~l~~s~d~~~~~l~ 469 (1096)
..+.+|...+.|+. .......+...|+.+.+||.+..+.. ....+.--. .-..|+++.++.+..+++
T Consensus 95 --------~~~~g~~~~~~cv~--a~~~~~~~~~ad~~v~vw~~~~~e~~-~~~~~rf~~k~~ipLcL~~~~~~~~~lla 163 (764)
T KOG1063|consen 95 --------YTIQGHCKECVCVV--ARSSVMTCKAADGTVSVWDKQQDEVF-LLAVLRFEIKEAIPLCLAALKNNKTFLLA 163 (764)
T ss_pred --------EeecCcceeEEEEE--eeeeEEEeeccCceEEEeecCCCcee-eehheehhhhhHhhHHHhhhccCCcEEEE
Confidence 12556666555554 32223333368999999999554411 111122112 223567777755554778
Q ss_pred EEeCCCcEEEEE-cCC--ceEEEeeCCCCCeEEEEeeecCC-CcEEEEEECCCeEEEEEcCCCC----------------
Q 001343 470 TCGDDKLIKVWE-LSG--RKLFNFEGHEAPVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDTMG---------------- 529 (1096)
Q Consensus 470 s~s~d~~i~iwd-~~~--~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~---------------- 529 (1096)
.|+.+..|.++. ..+ +.+..+.||.+.|.+++|...+. .-+|+++|.|..||+|.+.-..
T Consensus 164 ~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~ 243 (764)
T KOG1063|consen 164 CGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSN 243 (764)
T ss_pred ecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccC
Confidence 888888888887 433 45677899999999999976544 5688999999999999765332
Q ss_pred -----eee----------EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC--eeeEEEc----CcCccce
Q 001343 530 -----SRV----------DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYA----GFRKKSN 588 (1096)
Q Consensus 530 -----~~~----------~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~----~~~~~~i 588 (1096)
... .+.+|...|+++.|+|.+..|++++. |.++.+|...+. --+.... ++.....
T Consensus 244 ~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF 319 (764)
T KOG1063|consen 244 LPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGF 319 (764)
T ss_pred CceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccce
Confidence 000 12378889999999999999999887 999999987643 2222221 2222256
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEeCC-CCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCcccccc
Q 001343 589 GVVQFDTTQNHFLAVGEDSQIKFWDMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRA 667 (1096)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 667 (1096)
....|+|+++.+++-+..|..++|... ...........+|...|.+++|+|.|.+|.+.+.|.+-|+|-.-..++....
T Consensus 320 ~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHE 399 (764)
T KOG1063|consen 320 WGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHE 399 (764)
T ss_pred eeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceee
Confidence 778899999999999999999999933 2333444444555669999999999999999999999999865421111111
Q ss_pred ccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeee
Q 001343 668 VENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIV 747 (1096)
Q Consensus 668 ~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~ 747 (1096)
+..+. ++---+++++|-+ ....+++|..+..+|+|+...
T Consensus 400 iaRPQ--iHGyDl~c~~~vn-------------------------------------~~~~FVSgAdEKVlRvF~aPk-- 438 (764)
T KOG1063|consen 400 IARPQ--IHGYDLTCLSFVN-------------------------------------EDLQFVSGADEKVLRVFEAPK-- 438 (764)
T ss_pred ecccc--cccccceeeehcc-------------------------------------CCceeeecccceeeeeecCcH--
Confidence 11111 1111122333221 122344555556667766541
Q ss_pred cCCceEE-E-EcCCCCCCcccEEEEEEecCCceEEEeecC-CeEEEeeccCCccCCC--Cceeeec--------------
Q 001343 748 DSGQCRL-V-TMPESTDTSSKVVRLLYTNSAVGLLALGSN-GVQKLWKWHRNEQNPS--GKATASA-------------- 808 (1096)
Q Consensus 748 ~~~~~~~-~-~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-g~v~vw~~~~~~~~~~--g~~~~~~-------------- 808 (1096)
.+.. + .+.|. .-....-.|+|..+-+-+.. .-+..=....+..... ....+..
T Consensus 439 ---~fv~~l~~i~g~-----~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq 510 (764)
T KOG1063|consen 439 ---SFVKSLMAICGK-----CFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQ 510 (764)
T ss_pred ---HHHHHHHHHhCc-----cccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHH
Confidence 1111 0 11110 00000111222111111110 0000000000000000 0000000
Q ss_pred CccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecC------CeEEEEEcccceEEEeecCCCCCeeEEEEec
Q 001343 809 VPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG------GKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882 (1096)
Q Consensus 809 ~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~d------g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~ 882 (1096)
...+|. + +. .+.| |...|.+++.+|+|+++|++.. -.|++|+..+...+..+.+|.-.|+.++|||
T Consensus 511 ~~tLwP-E----v~-KLYG--HGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp 582 (764)
T KOG1063|consen 511 QNTLWP-E----VH-KLYG--HGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP 582 (764)
T ss_pred Hhccch-h----hH-Hhcc--CceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC
Confidence 011221 0 11 3445 9999999999999999999972 2399999999888889999999999999999
Q ss_pred CCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEccc
Q 001343 883 QDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASK 961 (1096)
Q Consensus 883 ~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~ 961 (1096)
|+++|++.+.|.++.+|....+. .+. ........|+. -|.+..|+||++++++ +.|++|.+|....
T Consensus 583 -dg~~LLsvsRDRt~sl~~~~~~~-----~~e------~~fa~~k~HtR-IIWdcsW~pde~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 583 -DGRYLLSVSRDRTVSLYEVQEDI-----KDE------FRFACLKAHTR-IIWDCSWSPDEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred -CCcEEEEeecCceEEeeeeeccc-----chh------hhhccccccce-EEEEcccCcccceeEEecCCceEEEEeccC
Confidence 99999999999999999986544 000 11233666776 8899999999999999 8999999999988
Q ss_pred c--eeccccccCCCCCCCceEEEEee-----CCcEEEEEecCCcEEEEecCCCc-eeE--EEccccccCCCccCCCcccc
Q 001343 962 M--ERIRQWTPQDALSAPISCAVYSC-----NSQLVFATFCDGNIGVFDADTLR-LRC--YIAPSTYLSPSVLNGSQTVY 1031 (1096)
Q Consensus 962 ~--~~~~~~~~~~~~~~~i~~l~~s~-----dg~~la~~~~dg~i~vwd~~~~~-~~~--~~~~~~~~~~~~~~h~~~v~ 1031 (1096)
. +.+..+... .+...|+++++.| .+..+++|.+.|.|.+|....-. ... .......++ ...+|.+.|.
T Consensus 650 ~~d~~i~~~a~~-~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~aV~ 727 (764)
T KOG1063|consen 650 LRDKYISRFACL-KFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLC-ATIGPDSAVN 727 (764)
T ss_pred chhhhhhhhchh-ccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccc-cccChHHhhh
Confidence 8 555553211 1388999999976 23378999999999999965111 000 000000011 1123777888
Q ss_pred ceEEEecCC---------CCceEEEEeeCCcEEEEccC
Q 001343 1032 PLVVAAHPL---------EPNQFAIGLTDGSVKVMEPS 1060 (1096)
Q Consensus 1032 s~~l~~s~~---------d~~~l~s~~~dg~i~vW~v~ 1060 (1096)
.+.|+|. ....|++|++|.+++++++.
T Consensus 728 --rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 728 --RLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred --eeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 4899973 12246999999999999874
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-38 Score=322.27 Aligned_cols=303 Identities=19% Similarity=0.309 Sum_probs=260.9
Q ss_pred CCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccc-ccc----CCC
Q 001343 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI-FKD----VPI 407 (1096)
Q Consensus 333 ~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----h~~ 407 (1096)
.|...++.+.|+.+|.+++|+|-..-++|+|+.|-+.++|++.......+.. ..+++.+ +.+ .+.
T Consensus 167 I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q----------~~lrh~~~~~~~s~~~nk 236 (524)
T KOG0273|consen 167 IPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ----------LVLRHCIREGGKSVPSNK 236 (524)
T ss_pred ccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh----------hhhhhhhhhhcccCCccC
Confidence 4455567778999999999999877679999999999999987411111000 0001100 111 246
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCce
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~ 486 (1096)
.|++++|+.+|..||+|+.||.+++|+...+ .+. ++..|+++|.++.|+.+|. +|++++.|+++.+|| .+|..
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-l~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGN-LIS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCch-hhh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceE
Confidence 8999999999999999999999999998764 344 5888999999999999999 899999999999999 99999
Q ss_pred EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeE
Q 001343 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1096)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i 566 (1096)
...+.-|..+-..+.|.. + ..+++++.||.|+++.+....+..++.+|.++|.++.|.|.|..|++++. |+++
T Consensus 311 ~q~f~~~s~~~lDVdW~~--~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tl 383 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQS--N-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTL 383 (524)
T ss_pred EEeeeeccCCccceEEec--C-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCee
Confidence 999999999877788853 2 57999999999999999999999999999999999999999999999997 9999
Q ss_pred EEEeCCCCeeeEEEcCcCccceEEEEEeCCC---------CEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEE
Q 001343 567 VEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ---------NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1096)
Q Consensus 567 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 637 (1096)
+||+.........+..|.+ .|..+.|+|.| ..+++++.|++|++||+..+.++..+..|.. +|++++|
T Consensus 384 kiWs~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~--pVysvaf 460 (524)
T KOG0273|consen 384 KIWSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE--PVYSVAF 460 (524)
T ss_pred EeeecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC--ceEEEEe
Confidence 9999999999999999988 78889999865 4689999999999999999999999987765 9999999
Q ss_pred eCCCCEEEEEECCCcEEEEEcCCC
Q 001343 638 SKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 638 s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+|+|+++|+|+.||.|.+|+..++
T Consensus 461 S~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 461 SPNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred cCCCcEEEecCCCCeeEeccccch
Confidence 999999999999999999999777
No 18
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-37 Score=325.42 Aligned_cols=474 Identities=14% Similarity=0.214 Sum_probs=355.5
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
|.+.|.||.|+|... .+.++-..|.|.|||.++...+.+ +.-..-+|.+..|-+-.++++
T Consensus 12 rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCc-eEEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 888999999999999 566777999999999999888765 333566899999999999999
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceEEEeeCCCCCeEEE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~~~~~v~~~ 500 (1096)
+|+.|..|+||+.++++.++ .+.+|.+-|.+++.+|... +++|+|+|-+|++|| ..-.+.++|.||+..|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998777 6889999999999999999 899999999999999 4456889999999999999
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCC--CEEEEEeeccCCCCeEEEEeCCCCeeeE
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG--SRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~--~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1096)
+|+|. |.+.+++++-|++|++|.+....+.+++.+|...|+++.+-+-| .+|++++. |..+++||..+..+++
T Consensus 147 ~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHH
Confidence 99997 45789999999999999999999999999999999999998755 58999886 9999999999999999
Q ss_pred EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 579 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
++.||.. .|+.++|+|.-..+++|++||+++||+..+.+...++..... +++|++-.+.++.+++|.+.|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle--RvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE--RVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc--eEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 899999999999999999999999999999888887766544 8999999999999999999888765 22
Q ss_pred CCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCc
Q 001343 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (1096)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i 738 (1096)
-.. ...+.+++.|+.+-+..+.- . ..+.+ +.+.++
T Consensus 298 gre------------------eP~vsMd~~gKIiwa~~~ei-~---------------------~~~~k---s~~~~~-- 332 (794)
T KOG0276|consen 298 GRE------------------EPAVSMDSNGKIIWAVHSEI-Q---------------------AVNLK---SVGAQK-- 332 (794)
T ss_pred cCC------------------CCceeecCCccEEEEcCcee-e---------------------eeece---eccCcc--
Confidence 211 11245555555442221110 0 00000 000000
Q ss_pred cceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCcc
Q 001343 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 818 (1096)
Q Consensus 739 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~ 818 (1096)
++. .++...+....-..-.-....++-+|+|+ +++.+.||...||.--. |.
T Consensus 333 ---ev~----DgErL~LsvKeLgs~eiyPq~L~hsPNGr-fV~VcgdGEyiIyTala-----------------~R---- 383 (794)
T KOG0276|consen 333 ---EVT----DGERLPLSVKELGSVEIYPQTLAHSPNGR-FVVVCGDGEYIIYTALA-----------------LR---- 383 (794)
T ss_pred ---ccc----CCccccchhhhccccccchHHhccCCCCc-EEEEecCccEEEEEeee-----------------hh----
Confidence 000 01111111000000111234567789998 77788888888886210 10
Q ss_pred ccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeE
Q 001343 819 LLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897 (1096)
Q Consensus 819 ~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i 897 (1096)
+. ..+.-....|++|....|+-. ++.|+++ ++++..++++..-. +-.+ - +|.+|... .++.+
T Consensus 384 ----nK-----~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~~---~e~i-~-gg~Llg~~-ss~~~ 446 (794)
T KOG0276|consen 384 ----NK-----AFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS---AEGI-F-GGPLLGVR-SSDFL 446 (794)
T ss_pred ----hc-----ccccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccccccc---eeee-c-CCceEEEE-eCCeE
Confidence 00 234456688999955556554 7889998 67877777743322 2222 2 45455544 45569
Q ss_pred EEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEcc
Q 001343 898 HIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 960 (1096)
Q Consensus 898 ~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~ 960 (1096)
++||.+++. .++..+. ....+.|+.+|.+++.+.|....|+-+.
T Consensus 447 ~fydW~~~~---------------lVrrI~v----~~k~v~w~d~g~lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 447 CFYDWESGE---------------LVRRIEV----TSKHVYWSDNGELVAIAGDDSFYILKFN 490 (794)
T ss_pred EEEEcccce---------------EEEEEee----ccceeEEecCCCEEEEEecCceeEEEec
Confidence 999999988 4444444 5578999999999988777776666553
No 19
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.7e-40 Score=327.31 Aligned_cols=254 Identities=22% Similarity=0.309 Sum_probs=231.8
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c
Q 001343 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~ 482 (1096)
|.+.+|..+.||+|++.||||+.+|.++||+..+...+. +|.||.+.|.++.|+|....+.++||+.||++++|+ .
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 456789999999999999999999999999999875554 789999999999999984222799999999999999 6
Q ss_pred CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCC
Q 001343 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
+..++..+.+|...|..++|+| +|++|++++.|.+-++||+++........+|...|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 6689999999999999999998 6689999999999999999999999999999999999999999999999998
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC-CC
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EG 641 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~ 641 (1096)
|..-++||+++|+++..+.+|.+ .|..+.|+|+|..+++|+.|++++|||++....+.++..|.. -|..+.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEecccCC
Confidence 88899999999999999999988 899999999999999999999999999999999999988876 899999999 88
Q ss_pred CEEEEEECCCcEEEEEcCCCccccccccC
Q 001343 642 NLLAVTTADNGFKILANAIGLRSLRAVEN 670 (1096)
Q Consensus 642 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 670 (1096)
.+|++++.|++++||...+. .+++.+.+
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksLaG 428 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSLAG 428 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhhcC
Confidence 99999999999999987665 34443333
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.2e-38 Score=299.47 Aligned_cols=290 Identities=17% Similarity=0.253 Sum_probs=263.3
Q ss_pred EEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC
Q 001343 338 AVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1096)
Q Consensus 338 ~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1096)
.++|+ |.+.|.++.|++|.+ .+++++.||.+.|||.-+....+. +.-...+|..++|+|
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sP 107 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSP 107 (343)
T ss_pred EEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECC
Confidence 46666 999999999999999 599999999999999887765543 334678999999999
Q ss_pred CCCEEEEEECCCeEEEEEccCC--C-ccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeC
Q 001343 417 DGNYVGVAFTKHLIQLYSYAGS--N-DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (1096)
Q Consensus 417 d~~~l~s~~~dg~i~vwd~~~~--~-~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~ 492 (1096)
.|+++|+|+.|+...||++.+. + ..+..+++.+|.+.+.|+.|.+|+. |+|+|.|.+..+|| .+|+.+..|.|
T Consensus 108 Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~G 184 (343)
T KOG0286|consen 108 SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHG 184 (343)
T ss_pred CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecC
Confidence 9999999999999999999864 1 2233447899999999999999774 99999999999999 99999999999
Q ss_pred CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC
Q 001343 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~ 572 (1096)
|.+.|.++++.|. +++.+++|+.|+..++||++.+.....+.+|...|+++.|.|+|.-+++|+. |+..++||++
T Consensus 185 H~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDlR 259 (343)
T KOG0286|consen 185 HTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDLR 259 (343)
T ss_pred CcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEeec
Confidence 9999999999886 6789999999999999999999999999999999999999999999999997 9999999999
Q ss_pred CCeeeEEEcCcCc-cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCC
Q 001343 573 EGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1096)
Q Consensus 573 ~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 651 (1096)
..+.+..|..... ..+++++|+..|++|++|..|.++.+||.-.++.+..+.+|.+ .|.++..+|||..+++|+.|.
T Consensus 260 aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 260 ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred CCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchhH
Confidence 9999888875432 3788999999999999999999999999999999999998877 999999999999999999999
Q ss_pred cEEEEE
Q 001343 652 GFKILA 657 (1096)
Q Consensus 652 ~i~iwd 657 (1096)
.++||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-38 Score=299.02 Aligned_cols=295 Identities=23% Similarity=0.322 Sum_probs=255.7
Q ss_pred Eeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 339 VSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 339 ~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
-++. |++.|+.++..+.+..++.+++.|.+|.+|++.......-. ..+.+.||...|..++.++|
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s~d 74 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLSSD 74 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEccC
Confidence 3455 99999999999998889999999999999999765322211 11248999999999999999
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCC--CC
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH--EA 495 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~--~~ 495 (1096)
|++.++++.|+++++||+.+|+..+ .|.||...|.+++|++|++ .|++|+.|++|++|+.-|.+..++..+ .+
T Consensus 75 g~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 75 GNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE 149 (315)
T ss_pred CceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecccEEEEEecCCCcC
Confidence 9999999999999999999997666 5889999999999999999 899999999999999777777777654 78
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1096)
.|.|+.|+|..+..+|++++.|+++++||+++.+....+.+|.+.++.+++||||...++|+. ++.+.+||++.++
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~~~k 225 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLNEGK 225 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEccCCc
Confidence 899999999877789999999999999999999999999999999999999999999999987 9999999999999
Q ss_pred eeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCC-------CCCCccEEEEeCCCCEEEEEE
Q 001343 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-------GLPNLPRLRFSKEGNLLAVTT 648 (1096)
Q Consensus 576 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~ 648 (1096)
.+..+.... .|.+++|+|+...|+.+. +..|+|||+.++..+..+.... ......+++|++||..|++|.
T Consensus 226 ~lysl~a~~--~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 226 NLYSLEAFD--IVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred eeEeccCCC--eEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 988776543 799999999866655554 4569999999988877665332 122456789999999999999
Q ss_pred CCCcEEEEEcC
Q 001343 649 ADNGFKILANA 659 (1096)
Q Consensus 649 ~dg~i~iwd~~ 659 (1096)
.|+.|++|.+.
T Consensus 303 td~~irv~qv~ 313 (315)
T KOG0279|consen 303 TDNVIRVWQVA 313 (315)
T ss_pred cCCcEEEEEee
Confidence 99999999874
No 22
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=8.6e-36 Score=322.21 Aligned_cols=572 Identities=14% Similarity=0.165 Sum_probs=420.1
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCe
Q 001343 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (1096)
Q Consensus 350 v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~ 429 (1096)
..|..-|+.++++.+.+.+..+||..+-..+.. -..+...|+|++=..+ ++.+|+. ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~g-~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVASG-NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEecC-cE
Confidence 555555666788888999999999987666542 2346788999986544 5555543 46
Q ss_pred EEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC-ceE----EEeeCCCCCeEEEEee
Q 001343 430 IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKL----FNFEGHEAPVYSICPH 503 (1096)
Q Consensus 430 i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~-~~~----~~~~~~~~~v~~~~~~ 503 (1096)
|.+|- .|+.++. .+.+|.+.|.-+.- -|. .++++..++.+.+|+ ..+ ..+ ..++.....|+++. |
T Consensus 97 i~~~~--rgk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYA--RGKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEE--ccceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 76664 3444443 45577777877764 366 799999999999999 553 221 11222233377774 5
Q ss_pred ecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc
Q 001343 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1096)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 583 (1096)
|..--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=..++.|.. +|.|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 5544467899999999999999999999999999999999999998889999987 999999999999999999877
Q ss_pred CccceEEEEEeCCCCEE-EEEEcCCeEEEEeCCCCeEEEEee-cCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 584 RKKSNGVVQFDTTQNHF-LAVGEDSQIKFWDMDNVNILTSTD-AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 584 ~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.+ .|+.++|..||+.+ ++|+..|.+.+||++..+.+..+. .| .+.|....|.|....+++++.|+.+++|-.+++
T Consensus 244 ~g-~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 244 WG-RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred cc-ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 55 89999999999755 556677999999999888877766 34 348999999999999999999999999876654
Q ss_pred c---cccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCc
Q 001343 662 L---RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (1096)
Q Consensus 662 ~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i 738 (1096)
. +.++.-.+|. .|..++.|- -..|..+.+++.|++.
T Consensus 321 dg~pR~LR~R~GHs-----~Pp~~irfy------------------------------------~~~g~~ilsa~~Drt~ 359 (910)
T KOG1539|consen 321 DGVPRLLRSRGGHS-----APPSCIRFY------------------------------------GSQGHFILSAKQDRTL 359 (910)
T ss_pred CCcchheeeccCCC-----CCchheeee------------------------------------ccCcEEEEecccCcch
Confidence 2 3334434443 334455543 1234455777888888
Q ss_pred cceeeeeeecCCceEEEEcCCCCCC-----------------cccEEEEEEecCC----ceEEEee-cCCeEEEeeccCC
Q 001343 739 KPWQLAEIVDSGQCRLVTMPESTDT-----------------SSKVVRLLYTNSA----VGLLALG-SNGVQKLWKWHRN 796 (1096)
Q Consensus 739 ~iw~~~~~~~~~~~~~~~~~~~~~~-----------------~~~i~~l~~s~~~----~~l~~~~-~dg~v~vw~~~~~ 796 (1096)
+.+++.. ..+...+.. .| -.+|..+++.... ..++++. .+...+.|++...
T Consensus 360 r~fs~~~-----e~~~~~l~~--~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~ 432 (910)
T KOG1539|consen 360 RSFSVIS-----ESQSQELGQ--LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK 432 (910)
T ss_pred hhhhhhH-----HHHhHhhcc--cccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCc
Confidence 8887641 111112211 00 0123344433211 1123333 2445555655321
Q ss_pred ccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEee---cCCC
Q 001343 797 EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTF---MSPP 872 (1096)
Q Consensus 797 ~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~---~~h~ 872 (1096)
.. |+ |-+... .+.- ....+++++.++.|++.+.|. .|.|-+|++++|-...++ ..|.
T Consensus 433 ~~---G~---------~~L~~~-----~~~~--~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~ 493 (910)
T KOG1539|consen 433 TS---GR---------HVLDPK-----RFKK--DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHK 493 (910)
T ss_pred cc---cc---------EEecCc-----cccc--cCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcccc
Confidence 11 00 001100 1111 346789999999999999998 699999999999998888 5899
Q ss_pred CCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Eec
Q 001343 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHE 951 (1096)
Q Consensus 873 ~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d 951 (1096)
++|++++... -++.+++++.+|-+.+||..... .+..+.-. ..++.+..+.....++. ..|
T Consensus 494 ~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~---------------l~~~l~l~--~~~~~iv~hr~s~l~a~~~dd 555 (910)
T KOG1539|consen 494 GEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKV---------------LKKSLRLG--SSITGIVYHRVSDLLAIALDD 555 (910)
T ss_pred CceeEEEecC-CCceEEEccCcceEEEEecCCcc---------------eeeeeccC--CCcceeeeeehhhhhhhhcCc
Confidence 9999999988 88999999999999999998765 22233222 26788888888888888 788
Q ss_pred ceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCcccc
Q 001343 952 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVY 1031 (1096)
Q Consensus 952 ~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 1031 (1096)
-.|+++|+.+.+.++.+.+| .+.|++++|||||++|++++.|++|++||+.++.++..+.-. .+..
T Consensus 556 f~I~vvD~~t~kvvR~f~gh---~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-----------~~~~ 621 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVVREFWGH---GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-----------SPCT 621 (910)
T ss_pred eeEEEEEchhhhhhHHhhcc---ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-----------Ccce
Confidence 99999999999999999886 999999999999999999999999999999999977665522 2445
Q ss_pred ceEEEecCCCCceEEEEeeC-CcEEEEccCC
Q 001343 1032 PLVVAAHPLEPNQFAIGLTD-GSVKVMEPSE 1061 (1096)
Q Consensus 1032 s~~l~~s~~d~~~l~s~~~d-g~i~vW~v~~ 1061 (1096)
.+.|+| +|++|||...| .-|++|.=.+
T Consensus 622 --sls~SP-ngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 622 --SLSFSP-NGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred --eeEECC-CCCEEEEEEecCceEEEEEchh
Confidence 499999 99999999999 6799997443
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.8e-36 Score=288.32 Aligned_cols=248 Identities=17% Similarity=0.222 Sum_probs=228.4
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
+|+||.+.|.++.|++|+++|++++.||.+.|||.-+..... .++-....|..++|+|.|+ ++++|+-|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 489999999999999999999999999999999998876555 3566788999999999999 89999999999999
Q ss_pred E-cCC------ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcC-CCCE
Q 001343 481 E-LSG------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGSR 552 (1096)
Q Consensus 481 d-~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~ 552 (1096)
+ ... +..+.+.+|.+.+.++.|.. | ..|++++.|.+..+||+++++....+.+|.+.|.++.++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 9 322 34567899999999999965 3 5799999999999999999999999999999999999999 9999
Q ss_pred EEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCc
Q 001343 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1096)
+++|+. |...++||++.+.++++|.+|.. .|++++|.|+|.-|++|++|++.++||++..+.+..+........|
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence 999998 99999999999999999999998 8999999999999999999999999999999999999887777799
Q ss_pred cEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 633 PRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
++++|+..|++|++|..|.++.+||.-.+
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeecccc
Confidence 99999999999999999999999997544
No 24
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=9.6e-35 Score=314.14 Aligned_cols=563 Identities=12% Similarity=0.153 Sum_probs=407.1
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.+.+.|+|++-+.+-- |+| ....|.+|.. |+.+. +++.+|.+.|.-+. +=|.++
T Consensus 74 ~lp~~I~alas~~~~v-y~A---~g~~i~~~~r--gk~i~------------------~~~~~~~a~v~~l~--~fGe~l 127 (910)
T KOG1539|consen 74 PLPDKITALASDKDYV-YVA---SGNKIYAYAR--GKHIR------------------HTTLLHGAKVHLLL--PFGEHL 127 (910)
T ss_pred CCCCceEEEEecCceE-EEe---cCcEEEEEEc--cceEE------------------EEeccccceEEEEe--eecceE
Confidence 3888999999877643 233 3456777764 43332 23666777777664 458899
Q ss_pred EEEECCCeEEEEEccCC-Ccccccee-ecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeE
Q 001343 422 GVAFTKHLIQLYSYAGS-NDLRQHSQ-IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~-~~~~~~~~-l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~ 498 (1096)
+++..++.+.||+..++ ........ ++...+.|+++. +|.---..++.|+.+|.+.+|+ .+++.+++++++...|+
T Consensus 128 ia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT 206 (910)
T KOG1539|consen 128 IAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRIT 206 (910)
T ss_pred EEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEeccccccee
Confidence 99999999999999885 22111111 222233377765 4432211688999999999999 99999999999999999
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeE
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1096)
++.-+|.- ..++.|..+|+|.+++++..+.+..+....++|++++|.-||..+++.+. ..|.+.+||++..+.+.
T Consensus 207 ~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~~ 281 (910)
T KOG1539|consen 207 AIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLIN 281 (910)
T ss_pred EeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeeee
Confidence 99876644 58999999999999999999999999888889999999999998776654 26899999999999888
Q ss_pred EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC----eEEEEeecCCCCCCccEEEEe-CCCCEEEEEECCCcE
Q 001343 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGGLPNLPRLRFS-KEGNLLAVTTADNGF 653 (1096)
Q Consensus 579 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i 653 (1096)
.....+...+....|-|....+++++.|+.+++|-.+++ ..++.-.+|. .+..++.|. .+|..+.+++.|+++
T Consensus 282 v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs--~Pp~~irfy~~~g~~ilsa~~Drt~ 359 (910)
T KOG1539|consen 282 VTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHS--APPSCIRFYGSQGHFILSAKQDRTL 359 (910)
T ss_pred eeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCC--CCchheeeeccCcEEEEecccCcch
Confidence 877444447788889999999999999999888866643 3344444554 488999998 689999999999999
Q ss_pred EEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccC
Q 001343 654 KILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDD 733 (1096)
Q Consensus 654 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 733 (1096)
+.+++.........-..+..... .+++ .+++.. ..+.+...+...........+.++..-
T Consensus 360 r~fs~~~e~~~~~l~~~~~~~~~-kk~~--~~~~~~-----------------~k~p~i~~fa~~~~RE~~W~Nv~~~h~ 419 (910)
T KOG1539|consen 360 RSFSVISESQSQELGQLHNKKRA-KKVN--VFSTEK-----------------LKLPPIVEFAFENAREKEWDNVITAHK 419 (910)
T ss_pred hhhhhhHHHHhHhhccccccccc-cccc--ccchhh-----------------hcCCcceeeecccchhhhhcceeEEec
Confidence 99887543111110011100000 0000 000000 000001111111111122233344444
Q ss_pred CCCCccceeeeeeecCCceEE-EEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccc
Q 001343 734 VTDKPKPWQLAEIVDSGQCRL-VTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQH 812 (1096)
Q Consensus 734 ~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~ 812 (1096)
.+...+.|+..+...+..... -++.. ....+++++.++-|...+.|.+.|.|.+|++..
T Consensus 420 ~~~~~~tW~~~n~~~G~~~L~~~~~~~---~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS----------------- 479 (910)
T KOG1539|consen 420 GKRSAYTWNFRNKTSGRHVLDPKRFKK---DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS----------------- 479 (910)
T ss_pred CcceEEEEeccCcccccEEecCccccc---cCcceEEEEEeccCceEEEeccCCeEEEEEccc-----------------
Confidence 456778899874222111111 00111 346789999999999888999999999999754
Q ss_pred cccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEe
Q 001343 813 WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 891 (1096)
Q Consensus 813 w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~ 891 (1096)
|...........|..+|+.++...-++.+++++ +|-+++||.++..++..++- ...++++..+. ....++.+
T Consensus 480 -----Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr-~s~l~a~~ 552 (910)
T KOG1539|consen 480 -----GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHR-VSDLLAIA 552 (910)
T ss_pred -----CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeee-hhhhhhhh
Confidence 222221111123999999999988888888888 89999999988887777753 34678888888 78899999
Q ss_pred eCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceecccccc
Q 001343 892 TEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTP 970 (1096)
Q Consensus 892 ~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~ 970 (1096)
..|-.|+++|+.+.+ .++.+.||.. .|+++.|||||++|++ +.|++|++||+.++.++..+.-
T Consensus 553 ~ddf~I~vvD~~t~k---------------vvR~f~gh~n-ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v 616 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTRK---------------VVREFWGHGN-RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV 616 (910)
T ss_pred cCceeEEEEEchhhh---------------hhHHhhcccc-ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec
Confidence 999999999999877 6789999998 9999999999999999 8999999999999999888864
Q ss_pred CCCCCCCceEEEEeeCCcEEEEEecC-CcEEEEecC
Q 001343 971 QDALSAPISCAVYSCNSQLVFATFCD-GNIGVFDAD 1005 (1096)
Q Consensus 971 ~~~~~~~i~~l~~s~dg~~la~~~~d-g~i~vwd~~ 1005 (1096)
..+..++.|||+|.+|||+..| .-|++|.-.
T Consensus 617 ----d~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 617 ----DSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred ----CCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 7889999999999999999998 669999743
No 25
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.4e-35 Score=312.29 Aligned_cols=541 Identities=15% Similarity=0.184 Sum_probs=381.6
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC---EEEEEEC
Q 001343 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN---YVGVAFT 426 (1096)
Q Consensus 350 v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~---~l~s~~~ 426 (1096)
..|.|.+ ++|.| ....|.+||..+..... .+.||.++|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafG-a~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFG-AGPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEec-CCceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 4455665 46655 67899999987653332 3899999999999999887 8999999
Q ss_pred CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEc-CCc--eEEEeeCCCCCe--EEEE
Q 001343 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGR--KLFNFEGHEAPV--YSIC 501 (1096)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~-~~~--~~~~~~~~~~~v--~~~~ 501 (1096)
|+.|++|.+.. +.+.....+.+|...+.|+.-.+ . ...+.+.|+++.+||. ..+ +...++-..+.+ .|++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv~a~~--~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKECVCVVARS--S--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeEEEEEeee--e--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999984 33444456777776666654322 2 2222378999999994 444 222232222222 3555
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCC--CeeeEEeCCCCcEEEEEEcCCCC---EEEEEeeccCCCCeEEEEeCCCCe-
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTM--GSRVDYDAPGHWCTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGT- 575 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~~~---~l~~~~~~~~~~~~i~iwd~~~~~- 575 (1096)
+.+.++.-.++.|+.+..|.++.-... .....+.+|...|.+++|...+. +|++++. |..|+||.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQ----D~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQ----DRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCC----ceEEEEEEEEecCC
Confidence 555333345566777788888865533 34557889999999999987655 4555554 9999999764221
Q ss_pred --------------------ee----------EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC--eEEEEe
Q 001343 576 --------------------IK----------RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTST 623 (1096)
Q Consensus 576 --------------------~~----------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~ 623 (1096)
.. ..+.||.+ -|.++.|+|.+..|++++.|.++.+|..... --+...
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v 307 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV 307 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEE
Confidence 11 11237877 8999999999999999999999999987654 332222
Q ss_pred ec---CCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCc
Q 001343 624 DA---EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1096)
Q Consensus 624 ~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~ 700 (1096)
.. .+.........|+|+++.+++-+..|..++|...+.
T Consensus 308 RlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~--------------------------------------- 348 (764)
T KOG1063|consen 308 RLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK--------------------------------------- 348 (764)
T ss_pred EeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc---------------------------------------
Confidence 21 122235788999999999999999999999972211
Q ss_pred eeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEE
Q 001343 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 780 (1096)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 780 (1096)
..|... ..+.| |...|++++|.|.|.+++
T Consensus 349 --------------------------------------~~w~~~----------~~iSG---H~~~V~dv~W~psGeflL 377 (764)
T KOG1063|consen 349 --------------------------------------TFWTQE----------PVISG---HVDGVKDVDWDPSGEFLL 377 (764)
T ss_pred --------------------------------------cceeec----------ccccc---ccccceeeeecCCCCEEE
Confidence 122221 12334 999999999999999999
Q ss_pred EeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecC-CeEEEEEc
Q 001343 781 ALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG-GKISLFNM 859 (1096)
Q Consensus 781 ~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~d-g~v~iwd~ 859 (1096)
+.+.|.+-|+|---. +.. -|. +-+++ +-|...++|++|-+....+++|.| ..+++|+.
T Consensus 378 svs~DQTTRlFa~wg-------~q~------~wH-EiaRP-------QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~a 436 (764)
T KOG1063|consen 378 SVSLDQTTRLFARWG-------RQQ------EWH-EIARP-------QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEA 436 (764)
T ss_pred Eeccccceeeecccc-------ccc------cee-eeccc-------ccccccceeeehccCCceeeecccceeeeeecC
Confidence 999999988876421 110 122 11111 128888999999885555666665 55888865
Q ss_pred cc-------------------------------------------ceE--------------------------------
Q 001343 860 MT-------------------------------------------FKV-------------------------------- 864 (1096)
Q Consensus 860 ~~-------------------------------------------~~~-------------------------------- 864 (1096)
.. |..
T Consensus 437 Pk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwP 516 (764)
T KOG1063|consen 437 PKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWP 516 (764)
T ss_pred cHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccch
Confidence 31 000
Q ss_pred -EEeecCCCCCeeEEEEecCCCcEEEEeeCCC-----eEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEE
Q 001343 865 -MTTFMSPPPASTFLAFHPQDNNIIAIGTEDS-----TIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQ 938 (1096)
Q Consensus 865 -~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg-----~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 938 (1096)
+..+-+|...|.+++.+| +++++|+++... .|++|+..+-. ..+.+.+|.. .|+.++
T Consensus 517 Ev~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~---------------~~~~L~~HsL-TVT~l~ 579 (764)
T KOG1063|consen 517 EVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWL---------------QVQELEGHSL-TVTRLA 579 (764)
T ss_pred hhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchh---------------hhheecccce-EEEEEE
Confidence 022347888999999999 999999998654 58899887655 4568899998 999999
Q ss_pred EecCCcEEEE-EecceEEEEEcccceec-cccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCC--ceeEEEc
Q 001343 939 FNADQVRMLV-VHETQLAIYDASKMERI-RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL--RLRCYIA 1014 (1096)
Q Consensus 939 fs~dg~~l~~-~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~--~~~~~~~ 1014 (1096)
|||||++|++ +.|+++.+|........ ..+.....|..-|.++.|+||++++||++.|.+|+||....+ +.+..+.
T Consensus 580 FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a 659 (764)
T KOG1063|consen 580 FSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFA 659 (764)
T ss_pred ECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhc
Confidence 9999999999 99999999998644321 122222234899999999999999999999999999999988 4433322
Q ss_pred cccccCCCccCCCccccceEEEecCCCCc----eEEEEeeCCcEEEEccC
Q 001343 1015 PSTYLSPSVLNGSQTVYPLVVAAHPLEPN----QFAIGLTDGSVKVMEPS 1060 (1096)
Q Consensus 1015 ~~~~~~~~~~~h~~~v~s~~l~~s~~d~~----~l~s~~~dg~i~vW~v~ 1060 (1096)
-.. ++..|+ +++|.|.+.+ .+++|-+.|.|.+|...
T Consensus 660 ~~~--------~~~aVT--Av~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 660 CLK--------FSLAVT--AVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred hhc--------cCCcee--eEEeeccccccccceEEEEecccEEEEEecc
Confidence 111 677888 4788775433 78999999999999965
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-35 Score=304.16 Aligned_cols=468 Identities=16% Similarity=0.212 Sum_probs=343.6
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+..++..|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-...+ .+++|++|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 45589999999999999999999999999999999988877 4666788999999998888 899999999999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC-CeeeEEeCCCCcEEEEEEcC-CCCEEEEEee
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSA-DGSRLFSCGT 558 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~ 558 (1096)
.+++.+..|..|...|.+++.||.. .++++++.|-+|++||.+.. .+...+.+|.+.|..++|+| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 9999999999999999999999964 79999999999999999864 45678999999999999998 5678889987
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCC--CEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEE
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1096)
|++|++|.+.+..+..++.+|.. .|+++.+-+-| .++++|++|.+|+|||..+..+++++.+|.+ .|..+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 99999999999999999999988 89999987744 7999999999999999999999999999987 899999
Q ss_pred EeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCccc
Q 001343 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716 (1096)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~ 716 (1096)
|+|.-.++++|+.||+++||+..+- +....+.-. -..+.+++-.+.+..+
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~g-----leRvW~I~~~k~~~~i------------------------ 284 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNYG-----LERVWCIAAHKGDGKI------------------------ 284 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhhcC-----CceEEEEeecCCCCeE------------------------
Confidence 9999999999999999999998765 332222211 2235566555544444
Q ss_pred CCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecC-CeEEEeeccC
Q 001343 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN-GVQKLWKWHR 795 (1096)
Q Consensus 717 ~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-g~v~vw~~~~ 795 (1096)
+.|..+|.|.+ .+. . ....+..++.|+.+-+..+. ..+.+-.+..
T Consensus 285 -------------~vG~Deg~i~v-~lg------------------r--eeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~ 330 (794)
T KOG0276|consen 285 -------------AVGFDEGSVTV-KLG------------------R--EEPAVSMDSNGKIIWAVHSEIQAVNLKSVGA 330 (794)
T ss_pred -------------EEeccCCcEEE-Ecc------------------C--CCCceeecCCccEEEEcCceeeeeeceeccC
Confidence 33333333322 111 1 11122233334322222111 1111111110
Q ss_pred CccCCCCceeeecCccccccCccccccccccCCC-cCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeecCCCCC
Q 001343 796 NEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN-LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPA 874 (1096)
Q Consensus 796 ~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~-~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~ 874 (1096)
.. ++..|..+.......+ -.--...++-||+|+++++++||.-.||..-.. -..+.+.
T Consensus 331 ~~----------------ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~-----RnK~fG~ 389 (794)
T KOG0276|consen 331 QK----------------EVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALAL-----RNKAFGS 389 (794)
T ss_pred cc----------------cccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeeh-----hhccccc
Confidence 00 2334443332222100 111223578899999999999999888873111 1123456
Q ss_pred eeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceE
Q 001343 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL 954 (1096)
Q Consensus 875 i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i 954 (1096)
-....|++ |.+..++-..++.|+++ +..+ ..+.+.. -....+--.|.+|.+..++.+
T Consensus 390 ~~eFvw~~-dsne~avRes~~~vki~--knfk---------------e~ksi~~-----~~~~e~i~gg~Llg~~ss~~~ 446 (794)
T KOG0276|consen 390 GLEFVWAA-DSNEFAVRESNGNVKIF--KNFK---------------EHKSIRP-----DMSAEGIFGGPLLGVRSSDFL 446 (794)
T ss_pred ceeEEEcC-CCCeEEEEecCCceEEE--ecce---------------ecccccc-----ccceeeecCCceEEEEeCCeE
Confidence 67789999 87788888888889998 3333 1111111 011222233556666788999
Q ss_pred EEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCC
Q 001343 955 AIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG 997 (1096)
Q Consensus 955 ~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg 997 (1096)
++||.++++.++.+.-. ...+.|+.+|.+++.++.|.
T Consensus 447 ~fydW~~~~lVrrI~v~------~k~v~w~d~g~lVai~~d~S 483 (794)
T KOG0276|consen 447 CFYDWESGELVRRIEVT------SKHVYWSDNGELVAIAGDDS 483 (794)
T ss_pred EEEEcccceEEEEEeec------cceeEEecCCCEEEEEecCc
Confidence 99999999999988532 56799999999999888774
No 27
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.1e-35 Score=311.98 Aligned_cols=557 Identities=15% Similarity=0.177 Sum_probs=354.3
Q ss_pred CCCceeecCCCce-------------eeecCCCCcceEEee-cCCCceEEEEEcCCCCcEEEEEeC-CCeEEEEecCCCC
Q 001343 314 SAEEVTYSSSRHQ-------------TWSLDDLPRTVAVSL-HQGSTVISMDFHPSHQTLLLVGSS-NGEITLWELAMRD 378 (1096)
Q Consensus 314 ~~~~v~~~~~~~~-------------~~~~~~~~~~~~~~l-~h~~~V~~v~fsp~g~~llasg~~-dg~I~iwd~~~~~ 378 (1096)
....|+|+..+.- +|++.... ++..+ .|+..|+|++|+|.++|++-+|+. |-.|.+||+....
T Consensus 80 ~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~--vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~ 157 (1080)
T KOG1408|consen 80 PLTCVAFSQNGRYVATGECGRTPASKVWSLAFHG--VVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNS 157 (1080)
T ss_pred ceeEEEEcCCCcEEEecccCCCccceeeeecccc--chhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcc
Confidence 3556666665443 88887533 34444 599999999999999964445554 5578899987655
Q ss_pred eeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEE
Q 001343 379 RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA 458 (1096)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~ 458 (1096)
.....+ -...|..++|+.||.|+++.+. ..|++|.++.++..+....+.+...-.-.+.
T Consensus 158 ~~asnk--------------------iss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr 216 (1080)
T KOG1408|consen 158 SGASNK--------------------ISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLR 216 (1080)
T ss_pred cccccc--------------------cceeEEEEEEccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccc
Confidence 443211 2457999999999999999875 6999999998875443333444333223333
Q ss_pred EecC-----CCc----EEEEEEeCCCcEEEEEcCCceEEEe-eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC
Q 001343 459 FAYP-----NKL----LCVVTCGDDKLIKVWELSGRKLFNF-EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM 528 (1096)
Q Consensus 459 ~s~d-----~~~----~~l~s~s~d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 528 (1096)
|+.- |.. -.++ -+..|.+.-+. +.+.+..+ +..+....|++++ ..+|++|+.+|.|++|+..+.
T Consensus 217 ~n~f~avaCg~gicAestfa-it~qGhLvEFS-sRRLLDKWVqcRTTnAnCIcVs----~r~I~cgCa~g~vrlFnp~tL 290 (1080)
T KOG1408|consen 217 FNEFLAVACGVGICAESTFA-ITAQGHLVEFS-SRRLLDKWVQCRTTNANCICVS----SRLIACGCAKGMVRLFNPETL 290 (1080)
T ss_pred cchhhhhhhcCcccccceEE-Eecccceeeec-hhhhhhhhhhhhccccceeeee----cceEEEeeccceeeecCcchh
Confidence 3210 000 0111 11123322222 11111111 1223445677763 369999999999999987654
Q ss_pred CeeeEEeC--------------------C----CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeE---EEc
Q 001343 529 GSRVDYDA--------------------P----GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR---TYA 581 (1096)
Q Consensus 529 ~~~~~~~~--------------------~----~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~---~~~ 581 (1096)
....++.. . -....++.|++....+.+... |..+++||+++-+.+. .+-
T Consensus 291 ~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn----dhSlYvWDvrD~~kvgk~~s~l 366 (1080)
T KOG1408|consen 291 DYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN----DHSLYVWDVRDVNKVGKCSSML 366 (1080)
T ss_pred hhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc----CceEEEEeccccccccceeeee
Confidence 33222110 0 013457889988888888876 9999999998754332 223
Q ss_pred CcCccceEEEEEeC-----------CCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC
Q 001343 582 GFRKKSNGVVQFDT-----------TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 582 ~~~~~~i~~~~~~~-----------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
.|.. .|+.+..-| ....|++++.|++|++|++..+..-..+.-.--......+-+..+...+. .|
T Consensus 367 yHS~-ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~---~d 442 (1080)
T KOG1408|consen 367 YHSA-CIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIM---HD 442 (1080)
T ss_pred eccc-eeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhh---hh
Confidence 3333 344333222 12458999999999999998643222221100000111111111110000 01
Q ss_pred CcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCcc
Q 001343 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT 730 (1096)
Q Consensus 651 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 730 (1096)
...-++|-.. ...+ ..+..+++++++|+|++ ||
T Consensus 443 ~~~~~fdka~----~s~~------d~r~G~R~~~vSp~gqh-------------------------------------LA 475 (1080)
T KOG1408|consen 443 ASAGIFDKAL----VSTC------DSRFGFRALAVSPDGQH-------------------------------------LA 475 (1080)
T ss_pred ccCCcccccc----hhhc------CcccceEEEEECCCcce-------------------------------------ec
Confidence 1111121110 0111 11334666776665555 57
Q ss_pred ccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecC---CceEEEeecCCeEEEeeccCCccCCCCceeee
Q 001343 731 VDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS---AVGLLALGSNGVQKLWKWHRNEQNPSGKATAS 807 (1096)
Q Consensus 731 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~---~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~ 807 (1096)
+|+.-|++++|++.+ ......+.. |..+|.|+.|+.. .+.|++++.|..|.+||+..
T Consensus 476 sGDr~GnlrVy~Lq~-----l~~~~~~eA---HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r------------ 535 (1080)
T KOG1408|consen 476 SGDRGGNLRVYDLQE-----LEYTCFMEA---HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR------------ 535 (1080)
T ss_pred ccCccCceEEEEehh-----hhhhhheec---ccceeEEEeecCchhhhHhhhhccCCceEEEEeccc------------
Confidence 888889999999973 222223444 9999999999863 45577778899999999743
Q ss_pred cCccccccCccccccccccCCCcCCCeeeeeecCCC--cEEEEec-CCeEEEEEccc-ceEEEeecCC-----CCCeeEE
Q 001343 808 AVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND--SYVMSAT-GGKISLFNMMT-FKVMTTFMSP-----PPASTFL 878 (1096)
Q Consensus 808 ~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg--~~la~~~-dg~v~iwd~~~-~~~~~~~~~h-----~~~i~~l 878 (1096)
...+..++.+ |...|+++.|.-+| ..+++++ |..|. |+... ......+..| ...+..+
T Consensus 536 ----------ny~l~qtld~--HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm 602 (1080)
T KOG1408|consen 536 ----------NYDLVQTLDG--HSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDM 602 (1080)
T ss_pred ----------ccchhhhhcc--cccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccccccccccceEEEe
Confidence 1122225666 99999999998877 5556655 54443 44322 1112223222 2467899
Q ss_pred EEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCC--CCCceEEEecCCcEEEE-EecceEE
Q 001343 879 AFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTP--TGDTRVQFNADQVRMLV-VHETQLA 955 (1096)
Q Consensus 879 ~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~v~~v~fs~dg~~l~~-~~d~~i~ 955 (1096)
+..| ..+++++++.|..|+||++++++ ..+.+.|... +....+...|.|.++|+ +.|++|.
T Consensus 603 ~Vdp-~~k~v~t~cQDrnirif~i~sgK---------------q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~ 666 (1080)
T KOG1408|consen 603 AVDP-TSKLVVTVCQDRNIRIFDIESGK---------------QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLC 666 (1080)
T ss_pred eeCC-CcceEEEEecccceEEEeccccc---------------eeeeecccccCCCceEEEEECCCccEEEEeecCCceE
Confidence 9999 89999999999999999999998 4455555443 46777888999999999 8999999
Q ss_pred EEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCC
Q 001343 956 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1006 (1096)
Q Consensus 956 iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~ 1006 (1096)
++|..+|+|+.++.+| ...|+.+.|++|.++|++++.||.|.||.+..
T Consensus 667 ~~Df~sgEcvA~m~GH---sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 667 FVDFVSGECVAQMTGH---SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEEeccchhhhhhcCc---chheeeeeecccchhheeecCCceEEEEECch
Confidence 9999999999999987 89999999999999999999999999999864
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.4e-36 Score=278.84 Aligned_cols=281 Identities=16% Similarity=0.262 Sum_probs=240.4
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~ 438 (1096)
+||+++.|.+|++|...+|.+.++ +....+.|+.+...||+++||+|+. ..|++||+.++
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~ 71 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSN 71 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccC-CeeEEEEccCC
Confidence 899999999999999999999875 4446789999999999999999876 58999999998
Q ss_pred CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC
Q 001343 439 NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID 517 (1096)
Q Consensus 439 ~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 517 (1096)
+.. ...++.+|.+.|+.+.|..+|+ .+++||+||+++||| ..-.+.+.++ |..+|+++..+| +...|++|..+
T Consensus 72 np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp--nQteLis~dqs 145 (311)
T KOG0315|consen 72 NPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP--NQTELISGDQS 145 (311)
T ss_pred CCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC--CcceEEeecCC
Confidence 764 4447899999999999999999 899999999999999 6644444444 779999999988 44689999999
Q ss_pred CeEEEEEcCCCCeeeEEeCCC-CcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC------eeeEEEcCcCccceEE
Q 001343 518 GKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG------TIKRTYAGFRKKSNGV 590 (1096)
Q Consensus 518 g~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~------~~~~~~~~~~~~~i~~ 590 (1096)
|.|++||+....+...+.... ..|.++.+.|||.+++++.. .|..++|++-+. +++..++.|.. .+..
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~il~ 220 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHNG-HILR 220 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheecccc-eEEE
Confidence 999999999887776655443 48999999999999999886 999999998654 35666788877 7778
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEeCCCC-eEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCcccccccc
Q 001343 591 VQFDTTQNHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVE 669 (1096)
Q Consensus 591 ~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 669 (1096)
+.++|++++|++++.|.+++||+.++. +....+.++ ...+..++||.||.+|++++.|+.+++|++..+ +..+...
T Consensus 221 C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~qy~ 297 (311)
T KOG0315|consen 221 CLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVRQYQ 297 (311)
T ss_pred EEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC--CceEEeeeeccCccEEEecCCCCceeecccccC-ceeeecC
Confidence 999999999999999999999999988 333444444 458999999999999999999999999999998 6666677
Q ss_pred CCCc
Q 001343 670 NPPF 673 (1096)
Q Consensus 670 ~~~~ 673 (1096)
+|..
T Consensus 298 gh~K 301 (311)
T KOG0315|consen 298 GHHK 301 (311)
T ss_pred Cccc
Confidence 6644
No 29
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-34 Score=308.73 Aligned_cols=559 Identities=16% Similarity=0.255 Sum_probs=392.8
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+...+..|..++|+|..-+++++-..|.|++||..-+.++. .+..|.++|..++|+|.+. +++||++|..|++|+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 45567889999999999999999999999999999998887 5788999999999999999 999999999999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
.+.+++.++.||-..|..+.||+. -.+|+++|.|.+|+||++.+..++..+.+|++.|.|..|+|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 999999999999999999999984 479999999999999999999999999999999999999999999999998
Q ss_pred CCCCeEEEEeCCCC-----------------------------eeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEE
Q 001343 561 DGDSFLVEWNESEG-----------------------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~-----------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 611 (1096)
|.+|++||+..- -....+.||.. .|+-++|+|.-..|++|++|..|++
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcceEEecCCcceeeE
Confidence 999999998621 12244567766 7888999999999999999999999
Q ss_pred EeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCe
Q 001343 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (1096)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 691 (1096)
|.+...+....-...+|.+.|.++-|+|...++++.+.|++|++||+... ..+++++...+ ..+.++.+|..++
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrrend-----RFW~laahP~lNL 306 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRREND-----RFWILAAHPELNL 306 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeeccCC-----eEEEEEecCCcce
Confidence 99987665554444455669999999999999999999999999999766 55666654433 4667899999999
Q ss_pred EEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEE
Q 001343 692 AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLL 771 (1096)
Q Consensus 692 lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 771 (1096)
++++-..+...+....... ... -.++.++..- |..|+-+|+.+ ........+......-.++.++.
T Consensus 307 fAAgHDsGm~VFkleRErp-a~~--------v~~n~LfYvk--d~~i~~~d~~t---~~d~~v~~lr~~g~~~~~~~sms 372 (1202)
T KOG0292|consen 307 FAAGHDSGMIVFKLERERP-AYA--------VNGNGLFYVK--DRFIRSYDLRT---QKDTAVASLRRPGTLWQPPRSLS 372 (1202)
T ss_pred eeeecCCceEEEEEcccCc-eEE--------EcCCEEEEEc--cceEEeeeccc---cccceeEeccCCCcccCCcceee
Confidence 9998887776663322111 001 1122222232 57888888875 22222223332111346889999
Q ss_pred EecCCceEEEeec--CCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEe
Q 001343 772 YTNSAVGLLALGS--NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA 849 (1096)
Q Consensus 772 ~s~~~~~l~~~~~--dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~ 849 (1096)
|+|....++.++. +|...++.+....- +. ..+ +... ......++-.+.++-.+..-
T Consensus 373 YNpae~~vlics~~~n~~y~L~~ipk~~~---~~------------~~~---~~~~----k~tG~~a~fvarNrfavl~k 430 (1202)
T KOG0292|consen 373 YNPAENAVLICSNLDNGEYELVQIPKDSD---GV------------SDG---KDVK----KGTGEGALFVARNRFAVLDK 430 (1202)
T ss_pred eccccCeEEEEeccCCCeEEEEEecCccc---cc------------CCc---hhhh----cCCCCceEEEEecceEEEEe
Confidence 9997765555432 56777777644211 00 000 0001 11223333333333222222
Q ss_pred cCCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCC
Q 001343 850 TGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGK 929 (1096)
Q Consensus 850 ~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 929 (1096)
++..+.+-++.+ +..+.+... .....|-+.. .|.+|+.. ...|.++|+.... .+..+..
T Consensus 431 ~~~~v~ik~l~N-~vtkkl~~~-~~~~~IF~ag-~g~lll~~--~~~v~lfdvQq~~---------------~~~si~~- 489 (1202)
T KOG0292|consen 431 SNEQVVIKNLKN-KVTKKLLLP-ESTDDIFYAG-TGNLLLRS--PDSVTLFDVQQKK---------------KVGSIKV- 489 (1202)
T ss_pred cCcceEEecccc-hhhhcccCc-ccccceeecc-CccEEEEc--CCeEEEEEeecce---------------EEEEEec-
Confidence 245566666533 333333222 2344555555 66655543 3459999998776 2222222
Q ss_pred CCCCCceEEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCc-
Q 001343 930 TPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR- 1008 (1096)
Q Consensus 930 ~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~- 1008 (1096)
+.+..+.||+|..+++.-.-++|.|.+.+ .+.+..+.. .-.|.+-+|..+|-+|.+... .|+ |-+.+|.
T Consensus 490 --s~vkyvvws~dm~~vAll~Kh~i~i~~kk-L~l~~sihE----tiriksgawde~gVfiYtT~n--Hik-Yal~~GD~ 559 (1202)
T KOG0292|consen 490 --SKVKYVVWSNDMSRVALLSKHTITIADKK-LELLCSIHE----TIRIKSGAWDEDGVFIYTTLN--HIK-YALENGDS 559 (1202)
T ss_pred --CceeEEEEcCccchhhhcccceEEEEecc-hhheecchh----eeEeeeceeccCceEEEEehh--hhh-hhhccCCc
Confidence 37889999999999888566888888765 222233321 556788889888888776543 233 3444433
Q ss_pred -eeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCCC
Q 001343 1009 -LRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1063 (1096)
Q Consensus 1009 -~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~ 1063 (1096)
++..+. .+++. .+. .|+.+..-..|+.+.+..|.--|
T Consensus 560 GIikTLd-------------~~iyi--tkv---~gn~V~cl~rd~~~~~~~IDptE 597 (1202)
T KOG0292|consen 560 GIIKTLD-------------KPIYI--TKV---KGNKVFCLNRDGEIECLTIDPTE 597 (1202)
T ss_pred ceEEecc-------------cceEE--EEe---eCCEEEEEecCCCeEEEeechHH
Confidence 222211 13442 222 47788888888888888876655
No 30
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.2e-36 Score=293.86 Aligned_cols=288 Identities=20% Similarity=0.334 Sum_probs=264.2
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 338 ~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
....+|..+|+.+-|+|+-. ++|+++.|++|++||+.+|+.... ++||.++|..|+|+..
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~~a~ 161 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISFDAS 161 (406)
T ss_pred hhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEEecC
Confidence 34456999999999999988 899999999999999999998654 8999999999999999
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCC
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~ 496 (1096)
|++||+++.|-.+++||.++. ....+.+.+|...|.+++|-|.|. +|++++.|.+|+.|+ .+|.+++++.+|...
T Consensus 162 Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h~ew 237 (406)
T KOG0295|consen 162 GKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGHSEW 237 (406)
T ss_pred ccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCchHh
Confidence 999999999988999999863 333336889999999999999998 999999999999999 999999999999999
Q ss_pred eEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCC---------------CCEEEEEeeccC
Q 001343 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD---------------GSRLFSCGTSKD 561 (1096)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~---------------~~~l~~~~~~~~ 561 (1096)
|..+.. ..||.++++++.|.++++|-+.++++...+..|..+|-+++|-|. +.++.+++.
T Consensus 238 vr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr--- 312 (406)
T KOG0295|consen 238 VRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR--- 312 (406)
T ss_pred EEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc---
Confidence 999887 458899999999999999999999999999999999999999764 246777765
Q ss_pred CCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCC
Q 001343 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1096)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1096)
|+.|++||+.++.++.++.+|.+ .|..++|+|.|++|+++.+|+++++||++++++...+..|.+ -|+++.|+.+.
T Consensus 313 -DktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lDfh~~~ 388 (406)
T KOG0295|consen 313 -DKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLDFHKTA 388 (406)
T ss_pred -cceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEecCCCC
Confidence 99999999999999999999988 899999999999999999999999999999999999998877 89999999999
Q ss_pred CEEEEEECCCcEEEEEc
Q 001343 642 NLLAVTTADNGFKILAN 658 (1096)
Q Consensus 642 ~~l~~~~~dg~i~iwd~ 658 (1096)
.++++|+-|.++++|.-
T Consensus 389 p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 389 PYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceEEeccccceeeeeec
Confidence 99999999999999963
No 31
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.5e-37 Score=303.88 Aligned_cols=336 Identities=21% Similarity=0.301 Sum_probs=272.2
Q ss_pred CCCCceeecCCccHHHHHhhcCCCCCCCceeecCCCce-------eeecCCCC----cceEEee--cCCCceEEEEEcCC
Q 001343 289 PPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQ-------TWSLDDLP----RTVAVSL--HQGSTVISMDFHPS 355 (1096)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~~~~~~----~~~~~~l--~h~~~V~~v~fsp~ 355 (1096)
+-..+.+||++........+.........+.++...-. .|. +++. .+.+++- +-+..|..|.|.|+
T Consensus 29 ~~~Rr~VDy~s~v~~~~~nR~~~~~~d~~~~~p~~~~~~~~~pp~~~~-~dp~~~~~tKf~h~s~NKvkc~V~~v~WtPe 107 (464)
T KOG0284|consen 29 PVARRTVDYNSPVCNYRQNRRWQYDRDRALLQPDSSYIIDLVPPSLYL-DDPSSAFTTKFVHTSSNKVKCPVNVVRWTPE 107 (464)
T ss_pred hhhhcccCCCcHHHHHHHHHhhcccccccccCCCchhhhcccChhhcc-CCcccccccceEeccccccccceeeEEEcCC
Confidence 33467888888877766665544321122222211111 333 2222 2222221 24568999999999
Q ss_pred CCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEc
Q 001343 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSY 435 (1096)
Q Consensus 356 g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~ 435 (1096)
|++ |++|+..|.+.+|+..+-. ++ .++..|.+.|.++.||++|.++++|+.+|.|++|+.
T Consensus 108 GRR-Lltgs~SGEFtLWNg~~fn------FE-------------tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqp 167 (464)
T KOG0284|consen 108 GRR-LLTGSQSGEFTLWNGTSFN------FE-------------TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQP 167 (464)
T ss_pred Cce-eEeecccccEEEecCceee------HH-------------HHhhhhcccceeEEEccCCCEEEEcCCCceEEeccc
Confidence 996 8899999999999974311 11 237789999999999999999999999999999997
Q ss_pred cCCCccccceeeccc-ccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEE
Q 001343 436 AGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFS 513 (1096)
Q Consensus 436 ~~~~~~~~~~~l~~h-~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 513 (1096)
.-.. ++ .+.+| ...|++++|+|.+. .+++|+.||+|+||| ...+....+.||.-.|.+++|+|.. .+|++
T Consensus 168 nmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k--gLias 239 (464)
T KOG0284|consen 168 NMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK--GLIAS 239 (464)
T ss_pred chhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc--ceeEE
Confidence 7543 22 24444 49999999999888 899999999999999 8888888999999999999999965 59999
Q ss_pred EECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEE
Q 001343 514 TAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF 593 (1096)
Q Consensus 514 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~ 593 (1096)
|+.|..|++||.+++.++.++..|...|..+.|++++++|++++. |..++++|+++.+.++++++|.. .+.++.|
T Consensus 240 gskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~r~Hkk-dv~~~~W 314 (464)
T KOG0284|consen 240 GSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTYRGHKK-DVTSLTW 314 (464)
T ss_pred ccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHhhcchh-hheeecc
Confidence 999999999999999999999999999999999999999999998 99999999999999999999998 8899999
Q ss_pred eCC-CCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 594 DTT-QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 594 ~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
+|- ...|.+|+.||.|..|.+...+++..+. ..+...|++++|+|=|.+|++|+.|.++++|.-.
T Consensus 315 hP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 315 HPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 995 4677889999999999998666665554 3345599999999999999999999999999753
No 32
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=2.7e-32 Score=278.24 Aligned_cols=525 Identities=17% Similarity=0.211 Sum_probs=379.9
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC--------cEEEEE-
Q 001343 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--------LIKVWE- 481 (1096)
Q Consensus 411 ~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~--------~i~iwd- 481 (1096)
.+-+-|.|..+.-.. +.+.+++++..... -+.+|...|.|++.+||.- .+++|-.-| .+++||
T Consensus 70 Nly~lptgE~vyfvA--~V~Vl~n~ee~~Qr----~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWds 141 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA--AVGVLYNWEERSQR----HYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDS 141 (626)
T ss_pred eeEEccCccEEEEec--cEEEEEeehhhhcc----cccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeeccc
Confidence 356677777665432 35667777552211 3679999999999999876 677665544 599999
Q ss_pred cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEE--ECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEE-EEee
Q 001343 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST--AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF-SCGT 558 (1096)
Q Consensus 482 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~-~~~~ 558 (1096)
.+-..+..+......|.+++|++...|.++... +.+..+.+||...+.........+..+....|+|.+..++ +++
T Consensus 142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G- 220 (626)
T KOG2106|consen 142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG- 220 (626)
T ss_pred ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-
Confidence 888888888878888999999998888777765 4456789999998877777777777899999999766554 554
Q ss_pred ccCCCCeEEEEeCCCCeeeEE---EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEE
Q 001343 559 SKDGDSFLVEWNESEGTIKRT---YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1096)
.+.++.|+.+.+...++ |..+....+.+++|.++|. +++|..+|.|.||+..+.+..+....|. +.|.++
T Consensus 221 ----k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~--ggv~~L 293 (626)
T KOG2106|consen 221 ----KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHD--GGVFSL 293 (626)
T ss_pred ----CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecC--CceEEE
Confidence 89999999998876554 5566666899999999875 7899999999999998877777666554 489999
Q ss_pred EEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcc
Q 001343 636 RFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII 715 (1096)
Q Consensus 636 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~ 715 (1096)
+.-.+|.+|- |+.|..|..|| ...+.++..+ .+...++++.++-...+ .+
T Consensus 294 ~~lr~GtllS-GgKDRki~~Wd--~~y~k~r~~e---lPe~~G~iRtv~e~~~d-i~----------------------- 343 (626)
T KOG2106|consen 294 CMLRDGTLLS-GGKDRKIILWD--DNYRKLRETE---LPEQFGPIRTVAEGKGD-IL----------------------- 343 (626)
T ss_pred EEecCccEee-cCccceEEecc--cccccccccc---CchhcCCeeEEecCCCc-EE-----------------------
Confidence 9999997766 99999999999 2213333322 22234455544432222 11
Q ss_pred cCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccC
Q 001343 716 NGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHR 795 (1096)
Q Consensus 716 ~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~ 795 (1096)
.|...+.|-.=.++ .+ ..+...| |......++.+|+...+++++.|+.+++|+-.
T Consensus 344 ---------------vGTtrN~iL~Gt~~----~~--f~~~v~g---h~delwgla~hps~~q~~T~gqdk~v~lW~~~- 398 (626)
T KOG2106|consen 344 ---------------VGTTRNFILQGTLE----NG--FTLTVQG---HGDELWGLATHPSKNQLLTCGQDKHVRLWNDH- 398 (626)
T ss_pred ---------------EeeccceEEEeeec----CC--ceEEEEe---cccceeeEEcCCChhheeeccCcceEEEccCC-
Confidence 22211222221221 11 1123344 88899999999999999999999999999821
Q ss_pred CccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCC
Q 001343 796 NEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPA 874 (1096)
Q Consensus 796 ~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~ 874 (1096)
--+|+.. -..++.|+.|.|.| .+|.|. .|...+.|..+...+..-.. ..+
T Consensus 399 --------------k~~wt~~-------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ 449 (626)
T KOG2106|consen 399 --------------KLEWTKI-------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQ 449 (626)
T ss_pred --------------ceeEEEE-------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCc
Confidence 1123321 35678899999999 889998 79999999988555544434 889
Q ss_pred eeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Eecce
Q 001343 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQ 953 (1096)
Q Consensus 875 i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~ 953 (1096)
+++++|+| +|.+||+|+.|+.|.||.++.+. . .-..+....+ +.|+.+.||+|++++.+ +.|-.
T Consensus 450 ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g-~----------~y~r~~k~~g---s~ithLDwS~Ds~~~~~~S~d~e 514 (626)
T KOG2106|consen 450 LSVVRYSP-DGAFLAVGSHDNHIYIYRVSANG-R----------KYSRVGKCSG---SPITHLDWSSDSQFLVSNSGDYE 514 (626)
T ss_pred eEEEEEcC-CCCEEEEecCCCeEEEEEECCCC-c----------EEEEeeeecC---ceeEEeeecCCCceEEeccCceE
Confidence 99999999 99999999999999999998765 0 0011223333 38999999999999999 89999
Q ss_pred EEEEEcccceeccc--------------c-ccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccc
Q 001343 954 LAIYDASKMERIRQ--------------W-TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTY 1018 (1096)
Q Consensus 954 i~iwd~~~~~~~~~--------------~-~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~ 1018 (1096)
|..|....-+.+.. + ..+.++...|..++-+.+.+++|+|...|.|++|...=-+.+.- ..
T Consensus 515 iLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~----~h 590 (626)
T KOG2106|consen 515 ILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAP----SH 590 (626)
T ss_pred EEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCccc----ce
Confidence 99994322111111 0 01111366777888888999999999999999998764433221 11
Q ss_pred cCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccC
Q 001343 1019 LSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1060 (1096)
Q Consensus 1019 ~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~ 1060 (1096)
...+ |++.|. +++|.. +...|++.+.|.+|..|++.
T Consensus 591 e~~g---hs~~vt--~V~Fl~-~d~~li~tg~D~Si~qW~lv 626 (626)
T KOG2106|consen 591 EYGG---HSSHVT--NVAFLC-KDSHLISTGKDTSIMQWRLV 626 (626)
T ss_pred eecc---ccceeE--EEEEee-CCceEEecCCCceEEEEEeC
Confidence 2234 999999 699998 67778877799999999873
No 33
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.7e-34 Score=280.46 Aligned_cols=289 Identities=15% Similarity=0.219 Sum_probs=248.8
Q ss_pred EEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC
Q 001343 338 AVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1096)
Q Consensus 338 ~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1096)
+.+|. |+++|.+++.+|+.+ ++|||+.|..-.||++.+|+.... +.+|+..|+|+.||.
T Consensus 57 ~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~Fsh 116 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCSFSH 116 (399)
T ss_pred eeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEEEcc
Confidence 44554 999999999999777 899999999999999999997654 889999999999999
Q ss_pred CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC
Q 001343 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1096)
Q Consensus 417 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~ 495 (1096)
||.+||||+.+|.|+||+..++.... .+...-..|.-+.|+|.+. .|+.|+.||.+.+|. .++...+.+.||..
T Consensus 117 dgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~~ 191 (399)
T KOG0296|consen 117 DGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHNS 191 (399)
T ss_pred CceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCCC
Confidence 99999999999999999999987665 3545677899999999888 999999999999999 66688889999999
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC-CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
++++=.|.| +|+.++++..||+|++|+..++++....... .....++.++..+..++.|.. ++.+++-+..+|
T Consensus 192 ~ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~~sg 265 (399)
T KOG0296|consen 192 PCTCGEFIP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNNGSG 265 (399)
T ss_pred CcccccccC--CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC----CccEEEEccccc
Confidence 999999977 6899999999999999999999988877643 336788999999999999987 899999999999
Q ss_pred eeeEEEcC--------cCc--cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEE
Q 001343 575 TIKRTYAG--------FRK--KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1096)
Q Consensus 575 ~~~~~~~~--------~~~--~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 644 (1096)
+.+....+ +.. ..+..+.++..-.+.++|+-||+|.|||+....+........ .|..+.|-+ ..+|
T Consensus 266 KVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~---~V~~l~w~~-t~~l 341 (399)
T KOG0296|consen 266 KVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHED---GVTKLKWLN-TDYL 341 (399)
T ss_pred eEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCC---ceEEEEEcC-cchh
Confidence 98887764 111 123334455555778999999999999998877777766543 699999998 7899
Q ss_pred EEEECCCcEEEEEcCCC
Q 001343 645 AVTTADNGFKILANAIG 661 (1096)
Q Consensus 645 ~~~~~dg~i~iwd~~~~ 661 (1096)
++++.+|.|+.||.++|
T Consensus 342 ~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 342 LTACANGKVRQWDARTG 358 (399)
T ss_pred eeeccCceEEeeecccc
Confidence 99999999999999888
No 34
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-33 Score=305.37 Aligned_cols=472 Identities=17% Similarity=0.224 Sum_probs=330.8
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
....|..++|+|... .+.++-..|.|++||..-+.++.. |.+|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 456899999999998 688888999999999998887754 889999999999999999999
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~ 501 (1096)
+|+.|-.|+||+.++.+++. ++.||-+.|..+.|++.-. .|+|+|+|.+|+||+ .+++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999988776 6889999999999999999 899999999999999 99999999999999999999
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCCC---------------------------e--eeEEeCCCCcEEEEEEcCCCCE
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTMG---------------------------S--RVDYDAPGHWCTTMLYSADGSR 552 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------------------------~--~~~~~~~~~~i~~l~~s~~~~~ 552 (1096)
|+|.. ..++++|-|.+||+||+.... . ...+.+|...|+-++|+|.-..
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 99976 589999999999999975210 1 1245678889999999999999
Q ss_pred EEEEeeccCCCCeEEEEeCCCCe--eeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCC
Q 001343 553 LFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1096)
+++|+. |..|++|.+...+ .+.+..+|.+ .|.++-|+|..+.+++.++|++|+|||+.....++++.....
T Consensus 221 iVSG~D----DRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend-- 293 (1202)
T KOG0292|consen 221 IVSGAD----DRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND-- 293 (1202)
T ss_pred EEecCC----cceeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC--
Confidence 999987 9999999986543 4567789988 899999999999999999999999999999999999976655
Q ss_pred CccEEEEeCCCCEEEEEECCCcEEEEEcCCCc---------------ccccccc-----------CCCcccccCcceeEE
Q 001343 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGL---------------RSLRAVE-----------NPPFEALRTPIESVA 684 (1096)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------------~~~~~~~-----------~~~~~~~~~~v~~~~ 684 (1096)
..+.++.+|..+++++|-+.| +.+|.+.... +.++.+. -........++.++.
T Consensus 294 RFW~laahP~lNLfAAgHDsG-m~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~sms 372 (1202)
T KOG0292|consen 294 RFWILAAHPELNLFAAGHDSG-MIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLS 372 (1202)
T ss_pred eEEEEEecCCcceeeeecCCc-eEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceee
Confidence 889999999999888775544 4455443110 0011110 001111235677888
Q ss_pred eecCCCeEEecCCCCceeEeccC---------CCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEE
Q 001343 685 LKVSASSAVSSGTPANCKVERSS---------PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLV 755 (1096)
Q Consensus 685 ~s~~g~~lv~~~s~~~~~~~~~~---------~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 755 (1096)
++|....+..+.+.+...++.-. .......-.|....|-...++.+-.-.+..+.+-++.. ...+.+
T Consensus 373 YNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N----~vtkkl 448 (1202)
T KOG0292|consen 373 YNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKN----KVTKKL 448 (1202)
T ss_pred eccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccc----hhhhcc
Confidence 88887666444333333331100 00011111122222222222221111122233323221 111111
Q ss_pred EcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCee
Q 001343 756 TMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVP 835 (1096)
Q Consensus 756 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~ 835 (1096)
..+ .....+.+..+|. ++..+. ..|.+|++.. ++.+. .+ .-..|.
T Consensus 449 ~~~------~~~~~IF~ag~g~-lll~~~-~~v~lfdvQq----------------------~~~~~-si----~~s~vk 493 (1202)
T KOG0292|consen 449 LLP------ESTDDIFYAGTGN-LLLRSP-DSVTLFDVQQ----------------------KKKVG-SI----KVSKVK 493 (1202)
T ss_pred cCc------ccccceeeccCcc-EEEEcC-CeEEEEEeec----------------------ceEEE-EE----ecCcee
Confidence 111 1333444555554 222222 3556666532 22211 11 245678
Q ss_pred eeeecCCCcEEEEecCCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEe
Q 001343 836 CIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 891 (1096)
Q Consensus 836 ~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~ 891 (1096)
-++||+|..++|.-+..+|.|.+. ..+.+.++. ..-.|.+-+|.. +|-++.+.
T Consensus 494 yvvws~dm~~vAll~Kh~i~i~~k-kL~l~~sih-Etiriksgawde-~gVfiYtT 546 (1202)
T KOG0292|consen 494 YVVWSNDMSRVALLSKHTITIADK-KLELLCSIH-ETIRIKSGAWDE-DGVFIYTT 546 (1202)
T ss_pred EEEEcCccchhhhcccceEEEEec-chhheecch-heeEeeeceecc-CceEEEEe
Confidence 899999999999999899999985 445666552 223566778877 66555444
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=282.96 Aligned_cols=293 Identities=17% Similarity=0.270 Sum_probs=261.7
Q ss_pred cceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEE
Q 001343 335 RTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1096)
Q Consensus 335 ~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1096)
-++.+.+. |.+.|.|+++.|... ++++|+.|++|+|||+.+|+...+ +.||...|..++
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~va 200 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRGVA 200 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheeeeee
Confidence 34455555 999999999999988 799999999999999999998765 899999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeC
Q 001343 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (1096)
Q Consensus 414 ~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~ 492 (1096)
+|+--.||++++.|+.|+.||++..+.++ .+.||-..|.|++..|.-. .|++|+.|.++++|| .+...+..+.|
T Consensus 201 vS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 201 VSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred ecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEecC
Confidence 99999999999999999999999988888 5789999999999999988 999999999999999 88899999999
Q ss_pred CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC
Q 001343 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~ 572 (1096)
|..+|.++.+.+.. ..+++|+.|++|++||+..++....+..|...+.+++.+|....+++++ ...|+-|++.
T Consensus 276 H~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-----~dnik~w~~p 348 (460)
T KOG0285|consen 276 HTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-----PDNIKQWKLP 348 (460)
T ss_pred CCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-----CccceeccCC
Confidence 99999999997643 5799999999999999999999999999999999999999999999987 5689999999
Q ss_pred CCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEee---cC---CCCCCccEEEEeCCCCEEEE
Q 001343 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD---AE---GGLPNLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 573 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~---~~~~~v~~~~~s~~~~~l~~ 646 (1096)
.|..+..+.+|.. .+.+++.+.| ..+++|+++|.+.+||.++|...+... .. .....|.+.+|...|..|++
T Consensus 349 ~g~f~~nlsgh~~-iintl~~nsD-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit 426 (460)
T KOG0285|consen 349 EGEFLQNLSGHNA-IINTLSVNSD-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLIT 426 (460)
T ss_pred ccchhhccccccc-eeeeeeeccC-ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEe
Confidence 9999999999988 8888888776 488999999999999999876554442 11 12236889999999999999
Q ss_pred EECCCcEEEEEcCCC
Q 001343 647 TTADNGFKILANAIG 661 (1096)
Q Consensus 647 ~~~dg~i~iwd~~~~ 661 (1096)
|..|.+|++|.-...
T Consensus 427 ~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 427 GEADKTIKMYKEDEH 441 (460)
T ss_pred ccCCcceEEEecccc
Confidence 999999999975443
No 36
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-33 Score=262.83 Aligned_cols=294 Identities=14% Similarity=0.206 Sum_probs=245.4
Q ss_pred CcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe--eeEEEcCcCc
Q 001343 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRK 585 (1096)
Q Consensus 508 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~ 585 (1096)
.-+|++++.|.+||+|...++.+..++......|+.+.+.|+++.|++++ ...|++||+++++ ++.+|.+|.+
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k 84 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK 84 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC
Confidence 35899999999999999999999999999999999999999999999987 7799999998765 6899999988
Q ss_pred cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCcccc
Q 001343 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (1096)
Q Consensus 586 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 665 (1096)
.|.++.|..+|+++++|++||+++|||++.....+.+... .+|+++..+|+...|++|..+|.|++||+.+. .+.
T Consensus 85 -NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~ 159 (311)
T KOG0315|consen 85 -NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCT 159 (311)
T ss_pred -ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCC-ccc
Confidence 8999999999999999999999999999996666665543 48999999999999999999999999999665 111
Q ss_pred ccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeee
Q 001343 666 RAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (1096)
Q Consensus 666 ~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~ 745 (1096)
..
T Consensus 160 ~~------------------------------------------------------------------------------ 161 (311)
T KOG0315|consen 160 HE------------------------------------------------------------------------------ 161 (311)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred eecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccc
Q 001343 746 IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 825 (1096)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~ 825 (1096)
.+|+ ....|.++...|||..++++...|...+|++-..... ..-..+. .+
T Consensus 162 ----------liPe---~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~----------------s~l~P~~-k~ 211 (311)
T KOG0315|consen 162 ----------LIPE---DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA----------------SELEPVH-KF 211 (311)
T ss_pred ----------cCCC---CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc----------------ccceEhh-he
Confidence 1222 4457888999999999999988999999998542210 0001111 24
Q ss_pred cCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccc-eEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeec
Q 001343 826 AGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (1096)
Q Consensus 826 ~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~-~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~ 903 (1096)
+. |..-+..+.+|||+++||+++ |.+++||+..+. +.-..+.+|...++.++||. |+.+|++|+.|+.+++|++.
T Consensus 212 ~a--h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 212 QA--HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred ec--ccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccc
Confidence 43 899999999999999999999 799999999887 66677889999999999999 99999999999999999999
Q ss_pred cceeeeeeccccccccceeeecCCCCCCCCCceEE
Q 001343 904 VDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQ 938 (1096)
Q Consensus 904 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 938 (1096)
.++ .++...||.. ...+++
T Consensus 289 ~~k---------------~v~qy~gh~K-~~vc~~ 307 (311)
T KOG0315|consen 289 AGK---------------EVRQYQGHHK-AAVCVA 307 (311)
T ss_pred cCc---------------eeeecCCccc-ccEEEE
Confidence 988 5667777765 444444
No 37
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.6e-34 Score=274.05 Aligned_cols=287 Identities=17% Similarity=0.237 Sum_probs=250.1
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 338 ~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
....+|++.|.++.|+|+|. +||+|+.|..|.+|++.....-. -.+++|+++|..+.|.+|
T Consensus 41 m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d 101 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRD 101 (338)
T ss_pred hhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccC
Confidence 34457999999999999999 79999999999999975432211 137899999999999999
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCC
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~ 496 (1096)
++.|++++.|.+|+.||+++|++.+ .+++|..-|+.+.-+.-|.. ++.|++.|+++++|| .+..+++++. ....
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyq 176 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQ 176 (338)
T ss_pred CCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-ccee
Confidence 9999999999999999999999888 47789999999996666665 788999999999999 7777777765 4567
Q ss_pred eEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC---
Q 001343 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--- 573 (1096)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~--- 573 (1096)
++++.|.. .+..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++++-+. +..+++||++.
T Consensus 177 ltAv~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 177 LTAVGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAP 250 (338)
T ss_pred EEEEEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCC
Confidence 89999855 5578999999999999999999999999999999999999999999999987 99999999874
Q ss_pred -CeeeEEEcCcCcc---ceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEEC
Q 001343 574 -GTIKRTYAGFRKK---SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1096)
Q Consensus 574 -~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1096)
.+++..+.++.-. ....++|+|+++.+-+|+.|..+++||......+..+.+|.+ .|++++|+|...+|.+++.
T Consensus 251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEecc
Confidence 4557778776431 344589999999999999999999999999899999988876 8999999999999999999
Q ss_pred CCcEEEE
Q 001343 650 DNGFKIL 656 (1096)
Q Consensus 650 dg~i~iw 656 (1096)
|.+|.+=
T Consensus 329 dk~i~lg 335 (338)
T KOG0265|consen 329 DKTIYLG 335 (338)
T ss_pred CceeEee
Confidence 9998763
No 38
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6e-34 Score=288.53 Aligned_cols=280 Identities=20% Similarity=0.284 Sum_probs=253.5
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
....|++++|+.+|. +||+|+.||.++||+.. |..+. .+..|+++|.++.|+.+|.||+
T Consensus 234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~-G~l~~-------------------tl~~HkgPI~slKWnk~G~yil 292 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKD-GNLIS-------------------TLGQHKGPIFSLKWNKKGTYIL 292 (524)
T ss_pred ccCCcceEEecCCCC-eEEEeecCcEEEEEecC-chhhh-------------------hhhccCCceEEEEEcCCCCEEE
Confidence 346799999999999 89999999999999976 44443 2778999999999999999999
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~ 501 (1096)
+++.|+++.+||..+|.... .+.-|..+-.++.|-.+.. +++++.|+.|+|+. ....++.++.+|.++|.++.
T Consensus 293 S~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 293 SGGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred eccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 99999999999999987665 3556888878899987765 89999999999999 77789999999999999999
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCC---------CEEEEEeeccCCCCeEEEEeCC
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG---------SRLFSCGTSKDGDSFLVEWNES 572 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~---------~~l~~~~~~~~~~~~i~iwd~~ 572 (1096)
|+| .+.+|++++.|++++||++........+..|...|+.+.|+|+| ..+++++. ++.|++||+.
T Consensus 367 ~n~--tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~ 440 (524)
T KOG0273|consen 367 WNP--TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVE 440 (524)
T ss_pred ECC--CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEcc
Confidence 977 55899999999999999998888888999999999999999975 36778877 9999999999
Q ss_pred CCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCc
Q 001343 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1096)
Q Consensus 573 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 652 (1096)
.+.++.+|..|.. +|.+++|+|+|+++++|+.||.|.+|+.++++..+...... .|..++|+.+|.+|..+..|+.
T Consensus 441 ~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 441 SGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred CCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCC
Confidence 9999999999988 99999999999999999999999999999999999988654 5899999999999999999999
Q ss_pred EEEEEcC
Q 001343 653 FKILANA 659 (1096)
Q Consensus 653 i~iwd~~ 659 (1096)
+++.|+.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9998874
No 39
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-33 Score=267.93 Aligned_cols=293 Identities=17% Similarity=0.230 Sum_probs=239.5
Q ss_pred cccccCCCCEEEEEEcCC-CCEEEEEECCCeEEEEEccCCCcc--ccceeecccccCEEEEEEecCCCcEEEEEEeCCCc
Q 001343 400 SIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~spd-~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~ 476 (1096)
..+.+|++.|+.++..+. ...|++++.|.++.+|++...... ...+.+.||...|..+..++||+ +.++++.|++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~--~alS~swD~~ 86 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN--FALSASWDGT 86 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc--eEEeccccce
Confidence 358999999999999986 568889999999999998753211 12336889999999999999999 8999999999
Q ss_pred EEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC--CCcEEEEEEcCC--CC
Q 001343 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSAD--GS 551 (1096)
Q Consensus 477 i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~--~~ 551 (1096)
+++|| .+|+..+.|.||...|.+++|++ |...+++|+.|.+|++|+.-.. +..+.... ...|.++.|+|+ ..
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~--dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFST--DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecC--CCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 99999 88899999999999999999977 5589999999999999997644 44444333 679999999998 67
Q ss_pred EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCC
Q 001343 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1096)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1096)
.|++++. |+.+++||+++.+....+.+|.. .++.++++|||...++|+.||.+.+||++.++.+..+.... .
T Consensus 164 ~Ivs~s~----DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~---~ 235 (315)
T KOG0279|consen 164 IIVSASW----DKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFD---I 235 (315)
T ss_pred EEEEccC----CceEEEEccCCcchhhccccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCC---e
Confidence 8888887 99999999999999999999988 89999999999999999999999999999999988876543 7
Q ss_pred ccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCc----ccccCcceeEEeecCCCeEEecCCCCceeEeccC
Q 001343 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPF----EALRTPIESVALKVSASSAVSSGTPANCKVERSS 707 (1096)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~ 707 (1096)
|.+++|+|+...|+.+.. ..|+|||+.+. .++..+..... ........+++
T Consensus 236 v~sl~fspnrywL~~at~-~sIkIwdl~~~-~~v~~l~~d~~g~s~~~~~~~clsla----------------------- 290 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAATA-TSIKIWDLESK-AVVEELKLDGIGPSSKAGDPICLSLA----------------------- 290 (315)
T ss_pred EeeEEecCCceeEeeccC-CceEEEeccch-hhhhhccccccccccccCCcEEEEEE-----------------------
Confidence 999999999877766654 46999999887 44433322111 11111122334
Q ss_pred CCcCCCcccCCCCccCCCCCCccccCCCCCccceeee
Q 001343 708 PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (1096)
Q Consensus 708 ~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~ 744 (1096)
+++||..|+.|..|+.|++|.+.
T Consensus 291 --------------ws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 291 --------------WSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred --------------EcCCCcEEEeeecCCcEEEEEee
Confidence 45566666888888999999875
No 40
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.4e-33 Score=262.06 Aligned_cols=289 Identities=19% Similarity=0.328 Sum_probs=236.0
Q ss_pred EEeec-CCCceEEEEEcCC-CCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 338 AVSLH-QGSTVISMDFHPS-HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 338 ~~~l~-h~~~V~~v~fsp~-g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
++++. |++.|+.++|+|- |. +||+|+.|..|+||+...+....- +..+-.+|+..|.+++|+
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAws 70 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWS 70 (312)
T ss_pred EEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeec
Confidence 44444 9999999999999 87 899999999999999885433211 111235799999999999
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC---ceEEEee
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RKLFNFE 491 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~---~~~~~~~ 491 (1096)
|.|++||+|+.|.++.||.-..+ .+....++.||...|.+++|+++|. +||+|+.|++|-||. ..+ .++..++
T Consensus 71 p~g~~La~aSFD~t~~Iw~k~~~-efecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~ 147 (312)
T KOG0645|consen 71 PHGRYLASASFDATVVIWKKEDG-EFECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQ 147 (312)
T ss_pred CCCcEEEEeeccceEEEeecCCC-ceeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence 99999999999999999986654 3444557999999999999999999 999999999999999 433 4678899
Q ss_pred CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC---CCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
.|...|..+.|||+. .+|++++.|.+|++|+-.. -.+..++.+|...|.+++|++.|..|++++. ++.++|
T Consensus 148 ~HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~I 221 (312)
T KOG0645|consen 148 EHTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVSI 221 (312)
T ss_pred cccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceEe
Confidence 999999999999976 5999999999999997662 3456788889889999999999999999987 999999
Q ss_pred EeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe--E----EEEeecCCCCCCccEEEEeCC-C
Q 001343 569 WNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN--I----LTSTDAEGGLPNLPRLRFSKE-G 641 (1096)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~----~~~~~~~~~~~~v~~~~~s~~-~ 641 (1096)
|-.. ..+.+.+...+..+.|. ...|++++.|+.|++|.....- + +.. ..+.|...|+++.|+|. .
T Consensus 222 w~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~dVNsV~w~p~~~ 293 (312)
T KOG0645|consen 222 WRLY-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEVDVNSVQWNPKVS 293 (312)
T ss_pred eeec-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh-hhcccccccceEEEcCCCC
Confidence 9754 23344444478888887 5689999999999999876421 1 111 12233448999999994 7
Q ss_pred CEEEEEECCCcEEEEEcC
Q 001343 642 NLLAVTTADNGFKILANA 659 (1096)
Q Consensus 642 ~~l~~~~~dg~i~iwd~~ 659 (1096)
++|+++++||.|++|.+.
T Consensus 294 ~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 NRLASGGDDGIVNFWELE 311 (312)
T ss_pred CceeecCCCceEEEEEec
Confidence 899999999999999864
No 41
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-33 Score=259.83 Aligned_cols=287 Identities=17% Similarity=0.238 Sum_probs=249.5
Q ss_pred CcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEE
Q 001343 334 PRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1096)
Q Consensus 334 ~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1096)
|.+..+.+. |.++|.++.|+-||+ |..+++.|.+|++||...|.++++ +.+|...|..+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~ 65 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDA 65 (307)
T ss_pred cchhceeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccceeee-------------------ecCCCceeeec
Confidence 444455666 999999999999999 577888999999999999999875 88999999999
Q ss_pred EEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE---cCCceEEE
Q 001343 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE---LSGRKLFN 489 (1096)
Q Consensus 413 ~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd---~~~~~~~~ 489 (1096)
+.+.|+..+++|+.|..|.+||+++|+..+ .+.+|.+.|+.+.|+.+.. .+++|+.|.++++|| .+.++++.
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccch
Confidence 999999999999999999999999999888 5889999999999999988 999999999999999 45678888
Q ss_pred eeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEE
Q 001343 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1096)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iw 569 (1096)
+......|.++.+. +..|++|+.||++|.||++.+..... .-+++|+++.|++|++..++++. ++.+++.
T Consensus 141 ldea~D~V~Si~v~----~heIvaGS~DGtvRtydiR~G~l~sD--y~g~pit~vs~s~d~nc~La~~l----~stlrLl 210 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVA----EHEIVAGSVDGTVRTYDIRKGTLSSD--YFGHPITSVSFSKDGNCSLASSL----DSTLRLL 210 (307)
T ss_pred hhhhcCceeEEEec----ccEEEeeccCCcEEEEEeecceeehh--hcCCcceeEEecCCCCEEEEeec----cceeeec
Confidence 98888899999873 46899999999999999997765443 34568999999999999999987 9999999
Q ss_pred eCCCCeeeEEEcCcCccce-EEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEE
Q 001343 570 NESEGTIKRTYAGFRKKSN-GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1096)
Q Consensus 570 d~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1096)
|-.+|++++.+.+|.+... ..++++....++++|++||.|++||+.....+..+..+... .|.+++++|....++++.
T Consensus 211 Dk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v-~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 211 DKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV-IVTDLSCHPTMDDFITAT 289 (307)
T ss_pred ccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce-eEEeeecccCccceeEec
Confidence 9999999999999987432 33677777889999999999999999999999988877652 488999999877777776
Q ss_pred CCCcEEEEE
Q 001343 649 ADNGFKILA 657 (1096)
Q Consensus 649 ~dg~i~iwd 657 (1096)
.. .+.+|.
T Consensus 290 ~~-~~~~~~ 297 (307)
T KOG0316|consen 290 GH-GDLFWY 297 (307)
T ss_pred CC-ceecee
Confidence 54 455554
No 42
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=9e-33 Score=271.50 Aligned_cols=328 Identities=16% Similarity=0.198 Sum_probs=275.6
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
|..|+..|.+++.+|+.+++|||+.|..-.+|++.+|.... .+.+|+..|+++.|+.||. +||||+-+|.|+||+
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFK 134 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEE
Confidence 77899999999999999999999999999999999998555 6889999999999999999 999999999999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
.++.....+...-..+.-+.||| .+.+|+.|+.||.+-+|.+.+......+.+|+.++++-.|.|+|+.++++..
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp--~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-- 210 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHP--RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-- 210 (399)
T ss_pred cccCceEEEeecccCceEEEEecc--cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec--
Confidence 88888888876677788899999 4589999999999999999998888899999999999999999999999987
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC--------CC-CCC
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE--------GG-LPN 631 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~-~~~ 631 (1096)
++.|++|+..++.++..+.........++.++..+..++.|..++.+++-+..+|+.+...... .+ ...
T Consensus 211 --dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 211 --DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred --CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 9999999999999999988666667778899999999999999999999999998887766531 11 112
Q ss_pred ccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcC
Q 001343 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1096)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~ 711 (1096)
|-.+.++..-.+.|+|+-||+|.|||+...
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-------------------------------------------------- 318 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAAS-------------------------------------------------- 318 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccc--------------------------------------------------
Confidence 333334444556666666666666665332
Q ss_pred CCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEe
Q 001343 712 SPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 791 (1096)
Q Consensus 712 ~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw 791 (1096)
..+. .+ .|...|..+.|-+ ..+|++++.+|.|+.|
T Consensus 319 ---------------------------------------~~R~-~c----~he~~V~~l~w~~-t~~l~t~c~~g~v~~w 353 (399)
T KOG0296|consen 319 ---------------------------------------TLRH-IC----EHEDGVTKLKWLN-TDYLLTACANGKVRQW 353 (399)
T ss_pred ---------------------------------------hhhe-ec----cCCCceEEEEEcC-cchheeeccCceEEee
Confidence 1111 11 1778899999999 6679999999999988
Q ss_pred eccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcc
Q 001343 792 KWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMM 860 (1096)
Q Consensus 792 ~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~ 860 (1096)
| ..+|++.. ++.| |...|.+++++|+++++++++ |++.+||+..
T Consensus 354 D----------------------aRtG~l~~-~y~G--H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 354 D----------------------ARTGQLKF-TYTG--HQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred e----------------------ccccceEE-EEec--CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 7 46676666 6887 999999999999999999999 6889999863
No 43
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-33 Score=275.50 Aligned_cols=292 Identities=16% Similarity=0.246 Sum_probs=253.3
Q ss_pred cccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
.++.+|.++|.|+++.|.+.++++|+.|++|+|||+.+|+... ++.||...|..+++++-.. ++++++.|+.|+.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKC 219 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKC 219 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEE
Confidence 3689999999999999999999999999999999999998666 6889999999999999998 8999999999999
Q ss_pred EE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
|| ...+.++.+.||-..|.+++.+|.- ..|++|+.|.++|+||+++...+..+.+|..+|.++.+.|....+++++.
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 99 8899999999999999999999865 58999999999999999999999999999999999999999999999997
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
|++|++||+..|+...++..|.. .+.+++.+|....|++++.| .|+-|++..|..+..+.++.. .|++++.+
T Consensus 298 ----D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~--iintl~~n 369 (460)
T KOG0285|consen 298 ----DSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA--IINTLSVN 369 (460)
T ss_pred ----CceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc--eeeeeeec
Confidence 99999999999999999998887 89999999999999998876 689999999999999887765 88999998
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCccccccc---cCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcc
Q 001343 639 KEGNLLAVTTADNGFKILANAIGLRSLRAV---ENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII 715 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~ 715 (1096)
.|+ ++++|++.|.+.+||..++. ..+.. .....-.....|.+.+|..
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg~-nyQ~~~t~vqpGSl~sEagI~as~fDk---------------------------- 419 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSGH-NYQRGQTIVQPGSLESEAGIFASCFDK---------------------------- 419 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcCc-ccccccccccCCccccccceeEEeecc----------------------------
Confidence 876 77899999999999999883 22222 2211111122334444443
Q ss_pred cCCCCccCCCCCCccccCCCCCccceeeee
Q 001343 716 NGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (1096)
Q Consensus 716 ~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~ 745 (1096)
.|..|+++..|.+|++|.-++
T Consensus 420 ---------tg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 420 ---------TGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ---------cCceEEeccCCcceEEEeccc
Confidence 344568888899999998764
No 44
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=312.45 Aligned_cols=284 Identities=22% Similarity=0.375 Sum_probs=252.0
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCC--eeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD--RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 420 (1096)
|...|.|+.|+|+|+ ++++++.|+.|++|+..+++ .+. .+.+|...|.+++|+||+++
T Consensus 158 ~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence 588999999999999 59999999999999997766 332 25789999999999999999
Q ss_pred EEEEECCCeEEEEEc-cCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeE
Q 001343 421 VGVAFTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~-~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~ 498 (1096)
+++|+.|++|+|||+ ..+..++ ++.+|...|++++|+|+++ .+++|+.|++|+||| .+++++..+.+|.++|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999999999 4445555 7889999999999999997 899999999999999 88999999999999999
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCC--eeeEEeCCCC--cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~--~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
+++|.+ ++.+|++++.||.|++||+.++. ....+..+.. .++++.|+|++.++++++. ++.+++||+..+
T Consensus 293 ~~~f~~--d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFSP--DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSG 366 (456)
T ss_pred EEEECC--CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCC
Confidence 999966 77899999999999999999988 3455554444 5999999999999999987 889999999999
Q ss_pred eeeEEEcCcCcc--ceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEE--CC
Q 001343 575 TIKRTYAGFRKK--SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT--AD 650 (1096)
Q Consensus 575 ~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d 650 (1096)
.....+.+|... .+.....++.+.++++|+.|+.|++|+..++..+..+.+|. ...+..+.++|..+++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999999875 33344557789999999999999999999999999998884 44889999999999999998 78
Q ss_pred CcEEEEEc
Q 001343 651 NGFKILAN 658 (1096)
Q Consensus 651 g~i~iwd~ 658 (1096)
+.+++|..
T Consensus 446 ~~~~~w~~ 453 (456)
T KOG0266|consen 446 GLIRLWKY 453 (456)
T ss_pred ceEEEecC
Confidence 99999975
No 45
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-33 Score=274.07 Aligned_cols=271 Identities=21% Similarity=0.290 Sum_probs=246.9
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+.+|..+|+.+-|+|+-..+++++.|++|++||..+|+..+ .++||...|.+++|+..|+ ++++|+.|-.+++||
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD 178 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence 77899999999999999999999999999999999999866 6899999999999999999 999999999999999
Q ss_pred --cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeec
Q 001343 482 --LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 482 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
...++++.+.+|...|.+++|.|. |.+|++++.|.+|+.|++.++-++..+.+|...|..+..+.||..+++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~--gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~- 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPL--GDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN- 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEec--CCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence 346788999999999999999885 479999999999999999999999999999999999999999999999997
Q ss_pred cCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC---------------CCEEEEEEcCCeEEEEeCCCCeEEEEee
Q 001343 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT---------------QNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1096)
+..+++|-..++++...++.|.- ++.+++|.|. +.++.+++.|++|++||+.++.++.++.
T Consensus 256 ---dqtl~vW~~~t~~~k~~lR~hEh-~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ 331 (406)
T KOG0295|consen 256 ---DQTLRVWVVATKQCKAELREHEH-PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV 331 (406)
T ss_pred ---CceEEEEEeccchhhhhhhcccc-ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe
Confidence 99999999999999999999887 8888888763 2488999999999999999999999999
Q ss_pred cCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeE
Q 001343 625 AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 625 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
+|.. .|..++|+|.|++|+++.+|+++++||+.+. ++++.+..|.. .++++.|..+..++
T Consensus 332 ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~ah~h-----fvt~lDfh~~~p~V 391 (406)
T KOG0295|consen 332 GHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLEAHEH-----FVTSLDFHKTAPYV 391 (406)
T ss_pred cccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccCCCcc-----eeEEEecCCCCceE
Confidence 9877 9999999999999999999999999999888 78888776644 46777776554443
No 46
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.7e-32 Score=261.20 Aligned_cols=248 Identities=18% Similarity=0.307 Sum_probs=215.1
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
.+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... .....+++|++.|..+.|.+|+. .|++++.|++|+.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence 478999999999999999999999999999999976532 23336889999999999999999 99999999999999
Q ss_pred E-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeec
Q 001343 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
| .+|++++.+++|..-|+++.... .+..++.+++.||++++||++.......+.. ..+++++.|..++..+.+++-
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~r-rg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggI- 194 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSR-RGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGI- 194 (338)
T ss_pred ecccceeeehhccccceeeecCccc-cCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccc-
Confidence 9 99999999999999999998433 2346788999999999999998777665532 347999999999999999998
Q ss_pred cCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC----CeEEEEeecCCCCC--Ccc
Q 001343 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN----VNILTSTDAEGGLP--NLP 633 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~--~v~ 633 (1096)
|+.|++||++......++.||.+ .|..+..+++|.++.+-+.|.++++||++. ..++..+.++.+.- ...
T Consensus 195 ---dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 195 ---DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred ---cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 99999999999999999999998 899999999999999999999999999975 33466776665432 345
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 634 RLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
.++|+|++..+.+|+.|..+.+||..
T Consensus 271 ~cswsp~~~~i~ags~dr~vyvwd~~ 296 (338)
T KOG0265|consen 271 KCSWSPNGTKITAGSADRFVYVWDTT 296 (338)
T ss_pred eeeccCCCCccccccccceEEEeecc
Confidence 67889999999999999999999863
No 47
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4e-34 Score=277.72 Aligned_cols=274 Identities=19% Similarity=0.282 Sum_probs=235.5
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
....|.|+.+..+ .+++|..|++|+|||..+-+++. .+.||++.|.|+.|. .+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqyd--~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQYD--ERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeecc--ceEEE
Confidence 3468999999643 48999999999999998877664 389999999999995 56999
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc---eEEEeeCCCCCeE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEGHEAPVY 498 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~---~~~~~~~~~~~v~ 498 (1096)
+|+.|.+|+|||+++|++++ ++.+|...|..+.|+.. ++++++.|.++.+|| .... +.+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999988 57789999999999854 899999999999999 4433 3356789999999
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeE
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1096)
.+.| +.+++++++.|.+|++|++.+.+.+..+.+|...|.|+.+ .|+++++|+. |.+|++||+..|.+++
T Consensus 325 vVdf----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDF----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eecc----ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 9998 4479999999999999999999999999999999998886 5788999987 9999999999999999
Q ss_pred EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEE-------EEeecCCCCCCccEEEEeCCCCEEEEEECCC
Q 001343 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL-------TSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1096)
Q Consensus 579 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 651 (1096)
.+.||.. -+.++.|. .+.+++|+.||+|++||+..+... .......+.+.|..+.| |...+++++.|.
T Consensus 395 vLeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd 469 (499)
T KOG0281|consen 395 VLEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD 469 (499)
T ss_pred HHhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC
Confidence 9999988 89999994 578999999999999999875432 11122233448888888 667899999999
Q ss_pred cEEEEEcCCCc
Q 001343 652 GFKILANAIGL 662 (1096)
Q Consensus 652 ~i~iwd~~~~~ 662 (1096)
+|.|||..++.
T Consensus 470 tILiWdFl~~~ 480 (499)
T KOG0281|consen 470 TILIWDFLNGP 480 (499)
T ss_pred eEEEEEcCCCC
Confidence 99999998874
No 48
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=5.5e-30 Score=261.50 Aligned_cols=500 Identities=14% Similarity=0.159 Sum_probs=355.4
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEeCCC--------eEEEEecCCCCeeecccceeecccccCccccccccccCCCCE
Q 001343 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNG--------EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1096)
Q Consensus 338 ~~~l~h~~~V~~v~fsp~g~~llasg~~dg--------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (1096)
.+.++|+..|.|++.+||-- .+|+|-..| .|+|||..+-..+. ++..-...|
T Consensus 98 r~y~GH~ddikc~~vHPdri-~vatGQ~ag~~g~~~~phvriWdsv~L~TL~-------------------V~g~f~~GV 157 (626)
T KOG2106|consen 98 RHYLGHNDDIKCMAVHPDRI-RVATGQGAGTSGRPLQPHVRIWDSVTLSTLH-------------------VIGFFDRGV 157 (626)
T ss_pred ccccCCCCceEEEeecCCce-eeccCcccccCCCcCCCeeeecccccceeee-------------------eeccccccc
Confidence 34567999999999999976 577775544 58999977655553 255567789
Q ss_pred EEEEEcC--CCCEEEEE--ECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC
Q 001343 410 SRVAWSP--DGNYVGVA--FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1096)
Q Consensus 410 ~~l~~sp--d~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~ 484 (1096)
.|++||+ .|.+|+.. +.+..+.|||.+.+..... ....++.|....|.|.+.. ++++++ .+.+..|+ ..+
T Consensus 158 ~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~---vk~sne~v~~a~FHPtd~n-liit~G-k~H~~Fw~~~~~ 232 (626)
T KOG2106|consen 158 TCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP---VKTSNEVVFLATFHPTDPN-LIITCG-KGHLYFWTLRGG 232 (626)
T ss_pred eeeeecccCCCceEEEecCCCccccchhhchhhhccCc---ceeccceEEEEEeccCCCc-EEEEeC-CceEEEEEccCC
Confidence 9999998 35666654 3456789999998766553 4456778999999999886 566666 78999999 555
Q ss_pred ceEEE---eeCC-CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 485 RKLFN---FEGH-EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 485 ~~~~~---~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
...++ ++++ ...|.|++|.+ +| -+++|..+|.|.||+..+.........|++.|.+++...+|..+- |+.
T Consensus 233 ~l~k~~~~fek~ekk~Vl~v~F~e--ng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgK-- 306 (626)
T KOG2106|consen 233 SLVKRQGIFEKREKKFVLCVTFLE--NG-DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGK-- 306 (626)
T ss_pred ceEEEeeccccccceEEEEEEEcC--CC-CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCc--
Confidence 44333 3333 35688999966 43 378999999999999987777666669999999999999998766 776
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcC-ccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1096)
|..|..|| ..-+.++...-.. ...+..++- .+.-|++|...+.|..=.+.++-.+.. .+|.. ....++.+|
T Consensus 307 --DRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e--~~~di~vGTtrN~iL~Gt~~~~f~~~v-~gh~d--elwgla~hp 378 (626)
T KOG2106|consen 307 --DRKIILWD-DNYRKLRETELPEQFGPIRTVAE--GKGDILVGTTRNFILQGTLENGFTLTV-QGHGD--ELWGLATHP 378 (626)
T ss_pred --cceEEecc-ccccccccccCchhcCCeeEEec--CCCcEEEeeccceEEEeeecCCceEEE-Eeccc--ceeeEEcCC
Confidence 99999999 4444444333222 225555543 333388888777777777766544433 34443 789999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCC
Q 001343 640 EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719 (1096)
Q Consensus 640 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~ 719 (1096)
+.+++++++.|+.+++|+ .. + +
T Consensus 379 s~~q~~T~gqdk~v~lW~--~~-k-------------------~------------------------------------ 400 (626)
T KOG2106|consen 379 SKNQLLTCGQDKHVRLWN--DH-K-------------------L------------------------------------ 400 (626)
T ss_pred ChhheeeccCcceEEEcc--CC-c-------------------e------------------------------------
Confidence 999999999999999998 11 1 0
Q ss_pred CccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccC
Q 001343 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQN 799 (1096)
Q Consensus 720 ~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~ 799 (1096)
+|... ...+..++.|+|.| .++++...|...+.|.+.
T Consensus 401 --------------------~wt~~------------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~---- 437 (626)
T KOG2106|consen 401 --------------------EWTKI------------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTET---- 437 (626)
T ss_pred --------------------eEEEE------------------ecCceeEeeccCcc-eEEEeeccceEEEEeccc----
Confidence 12211 33467788999999 688888888888777532
Q ss_pred CCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEccc-ceEEEee-cCCCCCee
Q 001343 800 PSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT-FKVMTTF-MSPPPAST 876 (1096)
Q Consensus 800 ~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~-~~~~~~~-~~h~~~i~ 876 (1096)
...+.. .- ...+++++.|+|+|.+||.|+ |+.|+||.+.. |...... +.+..+|+
T Consensus 438 ------------------~~lv~~--~~--d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~it 495 (626)
T KOG2106|consen 438 ------------------QDLVTI--HT--DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPIT 495 (626)
T ss_pred ------------------ceeEEE--Ee--cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeE
Confidence 222221 11 367899999999999999999 89999998843 4333332 23448999
Q ss_pred EEEEecCCCcEEEEeeCCCeEEEEeeccce------eeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-E
Q 001343 877 FLAFHPQDNNIIAIGTEDSTIHIYNVRVDE------LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-V 949 (1096)
Q Consensus 877 ~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~------~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~ 949 (1096)
.+.||+ |+++|.+.+-|-.|..|.-...+ -..|...... --...+.+.....+..++-+...+.+|+ .
T Consensus 496 hLDwS~-Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~----lGF~v~g~s~~t~i~a~~rs~~~~~lA~gd 570 (626)
T KOG2106|consen 496 HLDWSS-DSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCT----LGFEVFGGSDGTDINAVARSHCEKLLASGD 570 (626)
T ss_pred EeeecC-CCceEEeccCceEEEEEccccCcccceecceeeeeeEEE----EEEEEecccCCchHHHhhhhhhhhhhhccc
Confidence 999999 99999999999999999433322 0112111000 0011222222246788888999999999 5
Q ss_pred ecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEec
Q 001343 950 HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1004 (1096)
Q Consensus 950 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~ 1004 (1096)
..|.|++|....-..........+|.+-|.+++|+.+...+++.+.|..|..|++
T Consensus 571 d~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 571 DFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 7799999988644433332211123899999999999988888889999999986
No 49
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.8e-29 Score=266.48 Aligned_cols=505 Identities=12% Similarity=0.143 Sum_probs=352.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeeccc-ccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h-~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~ 482 (1096)
....|.++|||.+.+.||.+-.+|.|.+|++..+=.... ++.++ ...|.+++|++.+ .|++.+.+|.|.-|| .
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~---RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGG---RLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCC---eEEeecCCceEEEEecc
Confidence 456899999999999999999999999999998644433 45554 5689999999655 489999999999999 9
Q ss_pred CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee--EEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
+++.+..+....+.|++++.+|.. ..++.|+.||.+..++...+.... .+....+.+.++.|+|++..+++|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-- 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-- 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--
Confidence 999999999999999999998854 689999999977777776665544 33444568999999999999999997
Q ss_pred CCCCeEEEEeCCCCeeeEEEc----Cc---CccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCcc
Q 001343 561 DGDSFLVEWNESEGTIKRTYA----GF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~----~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1096)
|+.|++||..++..+.... +- ....+.++.|-. ...|++|...|+|.+||...+.+++....+.. .|.
T Consensus 175 --Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl 249 (691)
T KOG2048|consen 175 --DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVL 249 (691)
T ss_pred --CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEcccCcchhhhhhhhhc--cee
Confidence 9999999999988776221 11 122456666654 46899999999999999999999999988866 899
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCC
Q 001343 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSP 713 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~ 713 (1096)
+++..+++.++++++.|+.|..|...++........ ....+...+++++..++
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~--~r~~h~hdvrs~av~~~------------------------- 302 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINS--RRDLHAHDVRSMAVIEN------------------------- 302 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccceeeec--cccCCcccceeeeeecc-------------------------
Confidence 999999999999999999999988766633111111 11111222445554333
Q ss_pred cccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcc----cEEEEEEecCCceEEEeecCCeEE
Q 001343 714 IINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSS----KVVRLLYTNSAVGLLALGSNGVQK 789 (1096)
Q Consensus 714 ~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~----~i~~l~~s~~~~~l~~~~~dg~v~ 789 (1096)
.+++|+.|.++.+-...+ +.... |.. +-.+.......++++..-....+.
T Consensus 303 --------------~l~sgG~d~~l~i~~s~~---------~~~~~---h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~ 356 (691)
T KOG2048|consen 303 --------------ALISGGRDFTLAICSSRE---------FKNMD---HRQKNLFPASDRVSVAPENRLLVLWKAHGVD 356 (691)
T ss_pred --------------eEEecceeeEEEEccccc---------cCchh---hhccccccccceeecCccceEEEEecccccc
Confidence 345666666665544331 01111 110 011111111222344444455666
Q ss_pred EeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEe--
Q 001343 790 LWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTT-- 867 (1096)
Q Consensus 790 vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~-- 867 (1096)
+|.+..... .| ......+++..++ ....|.|.++||||+++|.+.-..++||.++.-..+..
T Consensus 357 lwrlGS~~~--~g-----------~~~~~~Llkl~~k---~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~ 420 (691)
T KOG2048|consen 357 LWRLGSVIL--QG-----------EYNYIHLLKLFTK---EKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVIN 420 (691)
T ss_pred ceeccCccc--cc-----------ccChhhheeeecC---CccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEE
Confidence 666643211 00 0111223333344 46779999999999999999878888998854222221
Q ss_pred ---ecCCCCCeeEEEEecCCCcEEEEee-CCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCC
Q 001343 868 ---FMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ 943 (1096)
Q Consensus 868 ---~~~h~~~i~~l~~s~~d~~~l~s~~-~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg 943 (1096)
.....-....+.|+- |++.++.++ .+..+.+.++++.. .+ ....++.- +.. ..|..+..|+||
T Consensus 421 v~~~~~~~~~a~~i~fti-d~~k~~~~s~~~~~le~~el~~ps---------~k-el~~~~~~-~~~-~~I~~l~~SsdG 487 (691)
T KOG2048|consen 421 VDDVPLALLDASAISFTI-DKNKLFLVSKNIFSLEEFELETPS---------FK-ELKSIQSQ-AKC-PSISRLVVSSDG 487 (691)
T ss_pred eccchhhhccceeeEEEe-cCceEEEEecccceeEEEEecCcc---------hh-hhhccccc-cCC-CcceeEEEcCCC
Confidence 112234567888998 677777776 67778888777654 00 00011111 222 389999999999
Q ss_pred cEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEee-CCcEEEEEecCCcEEEEecCCCc
Q 001343 944 VRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC-NSQLVFATFCDGNIGVFDADTLR 1008 (1096)
Q Consensus 944 ~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~-dg~~la~~~~dg~i~vwd~~~~~ 1008 (1096)
.+||+ +..+.|.+|++.+++.-..... +...+++++|+| +...|+++..|+.|.-||++..+
T Consensus 488 ~yiaa~~t~g~I~v~nl~~~~~~~l~~r---ln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 488 NYIAAISTRGQIFVYNLETLESHLLKVR---LNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred CEEEEEeccceEEEEEcccceeecchhc---cCcceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence 99999 8999999999998875333322 267899999995 56678889999999999995443
No 50
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.6e-29 Score=265.70 Aligned_cols=543 Identities=13% Similarity=0.151 Sum_probs=368.1
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccC-CCCEEEEEEcCCCCEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV-PISVSRVAWSPDGNYV 421 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spd~~~l 421 (1096)
...+|.|+|||.+.+. ||.+-.||.|.||++..+-... .++.++ ...|.+++|+ ++..|
T Consensus 24 ~Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~~------------------~vi~g~~drsIE~L~W~-e~~RL 83 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFLE------------------PVIHGPEDRSIESLAWA-EGGRL 83 (691)
T ss_pred eccceEEEEEeccCCc-eeeeccCCcEEEEccCCCceee------------------EEEecCCCCceeeEEEc-cCCeE
Confidence 3568999999999984 9999999999999998754332 234554 6789999999 56677
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEE--EeeCCCCCeE
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF--NFEGHEAPVY 498 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~--~~~~~~~~v~ 498 (1096)
.+.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|++||.+...+ ..++... .|...+++|.
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred EeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 788889999999999987766 5677889999999999998 899999999777777 4444432 3445578999
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC--------CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEe
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--------PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd 570 (1096)
++.|++ ++..|++|+.||.|++||...+........ ...-|+++.|-.++ .+++|.. .|.|.+||
T Consensus 159 slsw~~--~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS----~G~V~FWd 231 (691)
T KOG2048|consen 159 SLSWNP--TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDS----AGTVTFWD 231 (691)
T ss_pred EEEecC--CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecC----CceEEEEc
Confidence 999977 567899999999999999998887762211 22257888888665 5666654 89999999
Q ss_pred CCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeE--EE--EeecCCCCCCccEEEEeCCCCEEEE
Q 001343 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI--LT--STDAEGGLPNLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 571 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~--~~~~~~~~~~v~~~~~s~~~~~l~~ 646 (1096)
...+.+++.+..|.. .+.+++..+++++++++|.|+.|.-|...++.. +. ....|.+ .|.+++..++ .+++
T Consensus 232 ~~~gTLiqS~~~h~a-dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~h--dvrs~av~~~--~l~s 306 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDA-DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAH--DVRSMAVIEN--ALIS 306 (691)
T ss_pred ccCcchhhhhhhhhc-ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcc--cceeeeeecc--eEEe
Confidence 999999999999988 899999999999999999999999998876533 22 2234444 8999999887 8999
Q ss_pred EECCCcEEEEEcCCCccccccccCCCcccccCccee-EEeecCCCeEEecCCCCceeEeccC--------CCcCCCccc-
Q 001343 647 TTADNGFKILANAIGLRSLRAVENPPFEALRTPIES-VALKVSASSAVSSGTPANCKVERSS--------PVRPSPIIN- 716 (1096)
Q Consensus 647 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~lv~~~s~~~~~~~~~~--------~~~~~~~~~- 716 (1096)
|+.|..+.+-...... ...|... ...+-.+ +...|..+++ .-+......+.+.+ +......+.
T Consensus 307 gG~d~~l~i~~s~~~~-----~~~h~~~-~~~p~~~~v~~a~~~~L~-~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~ 379 (691)
T KOG2048|consen 307 GGRDFTLAICSSREFK-----NMDHRQK-NLFPASDRVSVAPENRLL-VLWKAHGVDLWRLGSVILQGEYNYIHLLKLFT 379 (691)
T ss_pred cceeeEEEEccccccC-----chhhhcc-ccccccceeecCccceEE-EEeccccccceeccCcccccccChhhheeeec
Confidence 9999988886543310 0011100 0000111 1222222222 22222211111111 111111111
Q ss_pred -C----CCCccCCCCCCccccCCCCCccceeeeeeecCCceEEE-EcCCCCCCcccEEEEEEecCCceEEEee-cCCeEE
Q 001343 717 -G----VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLV-TMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQK 789 (1096)
Q Consensus 717 -~----~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~dg~v~ 789 (1096)
+ ...+++|+|++++.+.- ...++|.+.. ...... .........-....+.|+-|+..++..+ ....+.
T Consensus 380 k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~----~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le 454 (691)
T KOG2048|consen 380 KEKENISCAAISPDGNLIAISTV-SRTKIYRLQP----DPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLE 454 (691)
T ss_pred CCccceeeeccCCCCCEEEEeec-cceEEEEecc----CcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeE
Confidence 1 23478999999998775 6778888763 112221 1111111334567788888887776666 456666
Q ss_pred EeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEee
Q 001343 790 LWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTF 868 (1096)
Q Consensus 790 vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~ 868 (1096)
.+++....+ +. .....-+ +....|+.++.||+|++||+.+ .|.|.+|++.+++.....
T Consensus 455 ~~el~~ps~----ke---------------l~~~~~~--~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 455 EFELETPSF----KE---------------LKSIQSQ--AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLK 513 (691)
T ss_pred EEEecCcch----hh---------------hhccccc--cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecch
Confidence 666543211 11 1111111 2467899999999999999998 799999999887765544
Q ss_pred cCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE
Q 001343 869 MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 948 (1096)
Q Consensus 869 ~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~ 948 (1096)
......+++++|+|.+.+.|+.+..|+.+.-||++...+--|+..... .-.+..+.+. ..+..+.|+|.....+.
T Consensus 514 ~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~-nlpk~~~~l~----~~~~gisfd~~n~s~~~ 588 (691)
T KOG2048|consen 514 VRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTR-NLPKEPKTLI----PGIPGISFDPKNSSRFI 588 (691)
T ss_pred hccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhcccc-ccccChhhcC----CCCceEEeCCCCccEEE
Confidence 345588999999975788999999999999999966553334332210 0011111222 27888888876664444
Q ss_pred -EecceEEEEEcc
Q 001343 949 -VHETQLAIYDAS 960 (1096)
Q Consensus 949 -~~d~~i~iwd~~ 960 (1096)
-..+.+.+.|..
T Consensus 589 ~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 589 VYDAHWSCLIDFS 601 (691)
T ss_pred EEcCcEEEEEecC
Confidence 444556666654
No 51
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1e-32 Score=298.90 Aligned_cols=245 Identities=20% Similarity=0.356 Sum_probs=227.0
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCC--------cc--------------------ccceeecccccCEEEE
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--------DL--------------------RQHSQIDAHVGAVNDL 457 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~--------~~--------------------~~~~~l~~h~~~v~~l 457 (1096)
...++|..||+|++.||.|..|..|++|.+...+ .+ ....++.||.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 4579999999999999999999999999987421 00 0113578999999999
Q ss_pred EEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC
Q 001343 458 AFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA 536 (1096)
Q Consensus 458 ~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 536 (1096)
.|+|+.+ +|++||.|++||+|. .+..++..++||..||+.+.|+| .|.+++|++.|++-++|..+.......+.+
T Consensus 458 sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P--~GyYFatas~D~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 458 SFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP--RGYYFATASHDQTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC--CceEEEecCCCceeeeeecccCCchhhhcc
Confidence 9999999 999999999999999 89999999999999999999987 679999999999999999999999999999
Q ss_pred CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 537 ~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
|...|.|+.|+|+..++++|+. |.++++||..+|..++.|.||.. +|.+++|+|+|++|++|++||.|.+||+.+
T Consensus 534 hlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred cccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 9999999999999999999987 99999999999999999999988 999999999999999999999999999999
Q ss_pred CeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+.++..+..|.+ .|.++.|+.+|..||+|+.|++|++||+...
T Consensus 609 ~~~v~~l~~Ht~--ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 609 GSLVKQLKGHTG--TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CcchhhhhcccC--ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999998844 9999999999999999999999999998654
No 52
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.4e-33 Score=285.65 Aligned_cols=292 Identities=18% Similarity=0.292 Sum_probs=250.9
Q ss_pred CCcceEEeec-CCCceEEEEEcC-CCCcEEEEEeCCCeEEEEecCC-CCeeecccceeecccccCccccccccccCCCCE
Q 001343 333 LPRTVAVSLH-QGSTVISMDFHP-SHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1096)
Q Consensus 333 ~~~~~~~~l~-h~~~V~~v~fsp-~g~~llasg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (1096)
+|...++++. |+..|+++.|.| .+. ||++|+.|+.|+||++.. ++++++ +.||..+|
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~h-LlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~V 261 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGH-LLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPV 261 (503)
T ss_pred ccHhheeeccCCccccchhhhccceee-EEEecCCCceEEEEEEecCcceehh-------------------hhcchhhh
Confidence 3666778876 999999999999 565 999999999999999987 666654 89999999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEE
Q 001343 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1096)
Q Consensus 410 ~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~ 488 (1096)
..++|+++|..+++++.|+.|++||+++|+++..+. ....++|+.|.||+.. .+++|+.|+.|+.|| .+++.++
T Consensus 262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~----~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH----LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred hhhhccccCCeeeeeecceeeeeeccccceEEEEEe----cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHH
Confidence 999999999999999999999999999999876432 3456899999999955 889999999999999 9999999
Q ss_pred EeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE-eCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEE
Q 001343 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1096)
Q Consensus 489 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~ 567 (1096)
.+..|-+.|..+.|.+ +|..+++.+.|++++||+.+....+... ..+.....++..+|+++++++-+. ++.|.
T Consensus 337 eYd~hLg~i~~i~F~~--~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~ 410 (503)
T KOG0282|consen 337 EYDRHLGAILDITFVD--EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIA 410 (503)
T ss_pred HHHhhhhheeeeEEcc--CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEE
Confidence 9999999999999976 6789999999999999999877665433 334447789999999999999887 89999
Q ss_pred EEeCCC---CeeeEEEcCcCccc-eEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC-CCC
Q 001343 568 EWNESE---GTIKRTYAGFRKKS-NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGN 642 (1096)
Q Consensus 568 iwd~~~---~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~ 642 (1096)
++.+.. ....+.|.||.... -..+.|+|||++|++|..||.+++||.++-+++..+..|.. .+..+.|+| ...
T Consensus 411 ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~S 488 (503)
T KOG0282|consen 411 IFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPS 488 (503)
T ss_pred EEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcc
Confidence 998653 23345677776432 34489999999999999999999999999999999998855 899999999 457
Q ss_pred EEEEEECCCcEEEEE
Q 001343 643 LLAVTTADNGFKILA 657 (1096)
Q Consensus 643 ~l~~~~~dg~i~iwd 657 (1096)
.+|+++.||.|++|+
T Consensus 489 kvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 489 KVATCGWDGLIKIWD 503 (503)
T ss_pred eeEecccCceeEecC
Confidence 899999999999996
No 53
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.9e-33 Score=275.34 Aligned_cols=241 Identities=16% Similarity=0.275 Sum_probs=218.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCC
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~ 484 (1096)
-+..|..|.|.|+|+.|++|+..|.+.+|+..+-. .+ ..++.|..+|+++.|++++. .++||+.+|.|++|+.+.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn-FE--tilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN-FE--TILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceee-HH--HHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccch
Confidence 35589999999999999999999999999974422 11 14678999999999999999 899999999999999777
Q ss_pred ceEEEeeCCC-CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCC
Q 001343 485 RKLFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 485 ~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~ 563 (1096)
+.++.+.+|. ..|.+++|+| +...+++++.||+|+|||....+....+.+|+-.|.++.|+|....+++++. |
T Consensus 170 nnVk~~~ahh~eaIRdlafSp--nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk----D 243 (464)
T KOG0284|consen 170 NNVKIIQAHHAEAIRDLAFSP--NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK----D 243 (464)
T ss_pred hhhHHhhHhhhhhhheeccCC--CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC----C
Confidence 7777777665 8999999988 4468999999999999999999988899999999999999999999999997 8
Q ss_pred CeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC-CCC
Q 001343 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGN 642 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~ 642 (1096)
..|++||.+++.++.++.+|.. .|..+.|++++++|++++.|..++++|+++.+.+..+++|.. .|+++.|+| ...
T Consensus 244 nlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~~ 320 (464)
T KOG0284|consen 244 NLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNES 320 (464)
T ss_pred ceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh--hheeecccccccc
Confidence 8999999999999999999988 899999999999999999999999999998888888888766 899999999 668
Q ss_pred EEEEEECCCcEEEEEcC
Q 001343 643 LLAVTTADNGFKILANA 659 (1096)
Q Consensus 643 ~l~~~~~dg~i~iwd~~ 659 (1096)
+|.+|+.||.|..|.+.
T Consensus 321 lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 321 LFTSGGSDGSVVHWVVG 337 (464)
T ss_pred ceeeccCCCceEEEecc
Confidence 99999999999999885
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.2e-30 Score=282.14 Aligned_cols=282 Identities=26% Similarity=0.425 Sum_probs=251.7
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
+|.++|++++|+|+++ ++++|+.||.|.+|++.+++.... +..|...+.++.|+|++++|
T Consensus 7 ~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCCCCEE
Confidence 4899999999999998 699999999999999988765432 56788899999999999999
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEE
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~ 500 (1096)
++++.||.|++||+.+++... .+..|...|.++.|+++++ ++++++.|+.|++|| .+++....+..|...+.++
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 999999999999999876555 5678999999999999987 788888899999999 7788888999999999999
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEE
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1096)
+|++. +.++++++.||.|++||++..+....+..+...+.++.|+|+++.+++++. ++.+++||+.+++.+..+
T Consensus 142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecch
Confidence 99874 578888888999999999988888888888889999999999999998886 899999999999999888
Q ss_pred cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEE
Q 001343 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1096)
Q Consensus 581 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 657 (1096)
..+.. .+..+.|++++.++++++.+|.|++|++.+++....+..+.. .+.+++|+|++..+++++.|+.+++|+
T Consensus 216 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN--SVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCC--cEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77766 888999999988888888899999999999888888875544 899999999999999999999999996
No 55
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.5e-30 Score=243.19 Aligned_cols=291 Identities=14% Similarity=0.234 Sum_probs=235.8
Q ss_pred ccccCCCCEEEEEEcCC-CCEEEEEECCCeEEEEEccCCCccccceee-cccccCEEEEEEecCCCcEEEEEEeCCCcEE
Q 001343 401 IFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQI-DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l-~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~ 478 (1096)
.+.+|.+.|..++|+|- |..||+|+.|+.|++|+...+........+ .+|+..|..++|+|.|+ +|+++|.|.++.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSFD~t~~ 86 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASFDATVV 86 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeeccceEE
Confidence 47889999999999998 899999999999999999864433322223 37999999999999999 999999999999
Q ss_pred EEE-c--CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC---CeeeEEeCCCCcEEEEEEcCCCCE
Q 001343 479 VWE-L--SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM---GSRVDYDAPGHWCTTMLYSADGSR 552 (1096)
Q Consensus 479 iwd-~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~l~~s~~~~~ 552 (1096)
||. . +-+++.++.||...|.+++|+. +|.+|++++.|+.|-||.+... ++...+..|.+.|..+.|+|....
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~--sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSA--SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcC--CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 998 4 3468899999999999999976 6789999999999999998743 344578899999999999999999
Q ss_pred EEEEeeccCCCCeEEEEeCC---CCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCC
Q 001343 553 LFSCGTSKDGDSFLVEWNES---EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1096)
|++++. |++|++|.-. ...+++++.+|.. .+.++.|++.|..+++++.|++++||...+. +. ..+.
T Consensus 165 L~S~SY----DnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~s 233 (312)
T KOG0645|consen 165 LFSCSY----DNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LS-GMHS 233 (312)
T ss_pred eEEecc----CCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeeeccC-----cc-hhcc
Confidence 999998 9999999866 4578999999988 8999999999999999999999999996522 21 1223
Q ss_pred CCccEEEEeCCCCEEEEEECCCcEEEEEcCCCc-cccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCC
Q 001343 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIGL-RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP 708 (1096)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~ 708 (1096)
..++.+.|. ...|++++.|+.|++|.-.... ...-.+.......+...|+++.+.|.++
T Consensus 234 r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~------------------ 293 (312)
T KOG0645|consen 234 RALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS------------------ 293 (312)
T ss_pred cceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC------------------
Confidence 478889998 5589999999999999866431 1111111222223344688888887432
Q ss_pred CcCCCcccCCCCccCCCCCCccccCCCCCccceeee
Q 001343 709 VRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (1096)
Q Consensus 709 ~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~ 744 (1096)
.+|++++.||.+++|.+.
T Consensus 294 ------------------~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 ------------------NRLASGGDDGIVNFWELE 311 (312)
T ss_pred ------------------CceeecCCCceEEEEEec
Confidence 346888999999999874
No 56
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-31 Score=265.96 Aligned_cols=291 Identities=13% Similarity=0.178 Sum_probs=247.0
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
++..|.+.|.-+.||++|+|||+++.|.+..+|++.....++..+++.+|..+|..+.||||++ +|++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 5888999999999999999999999999999999887666766778999999999999999999 89999999999999
Q ss_pred E-cCCceEEEee-CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC-CCcEEEEEEcCCCCEEEEEe
Q 001343 481 E-LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 481 d-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~ 557 (1096)
| .+|.+...+. ++...+.+++|.| ||..+++|+.|+++..||++... .....+. ...|.++++++||+++++.+
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEe
Confidence 9 8888877664 3467899999987 67889999999999999987543 2222222 24699999999999999988
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEE
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 637 (1096)
. +..|++++.++...+..+..+. ++++.+++.+++++++.-.+..+++||+.....+..+.++.....+..-+|
T Consensus 374 ~----d~~i~l~~~e~~~dr~lise~~--~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 374 V----DKKIRLYNREARVDRGLISEEQ--PITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred c----ccceeeechhhhhhhccccccC--ceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence 7 9999999988776665555543 799999999999999999999999999998888888887765545555566
Q ss_pred eC-CCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCccc
Q 001343 638 SK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716 (1096)
Q Consensus 638 s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~ 716 (1096)
-- +..++++|+.|+.|+||+..++ ..+..+.+|.. .|++++++|....
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~sg-kll~~LsGHs~-----~vNcVswNP~~p~------------------------- 496 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRISG-KLLAVLSGHSK-----TVNCVSWNPADPE------------------------- 496 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccCC-ceeEeecCCcc-----eeeEEecCCCCHH-------------------------
Confidence 54 5589999999999999999999 78888999864 4888999887554
Q ss_pred CCCCccCCCCCCccccCCCCCccceeee
Q 001343 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (1096)
Q Consensus 717 ~~~~~~s~d~~~l~s~~~dg~i~iw~~~ 744 (1096)
++|+++.||+||||...
T Consensus 497 -----------m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 497 -----------MFASASDDGTIRIWGPS 513 (519)
T ss_pred -----------HhhccCCCCeEEEecCC
Confidence 47899999999999876
No 57
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=3.1e-29 Score=307.54 Aligned_cols=291 Identities=14% Similarity=0.181 Sum_probs=237.5
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~ 420 (1096)
.|.+.|++++|+|+|+ ++|+|+.|+.|+|||+.+...... . .......+. +...|.+++|+| ++.+
T Consensus 481 ~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~~-~~~~v~~l~~~~~~~~~ 547 (793)
T PLN00181 481 NSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVELA-SRSKLSGICWNSYIKSQ 547 (793)
T ss_pred CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEec-ccCceeeEEeccCCCCE
Confidence 3899999999999999 799999999999999764211000 0 000000122 356899999988 4789
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEec-CCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeE
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~-d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~ 498 (1096)
||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++|| .++..+..+..+ ..|.
T Consensus 548 las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~ 621 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC 621 (793)
T ss_pred EEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE
Confidence 9999999999999999887665 5789999999999997 667 899999999999999 888888888755 6789
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCC-eeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC----
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---- 573 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~---- 573 (1096)
++.|.+ +++.+|++|+.||.|++||++... ....+..|...|.++.|. ++.++++++. |+.|++||+..
T Consensus 622 ~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 622 CVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSISG 695 (793)
T ss_pred EEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCccc
Confidence 999854 357899999999999999998765 455677888899999997 7788999887 99999999974
Q ss_pred --CeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEee-----------cCCCCCCccEEEEeCC
Q 001343 574 --GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD-----------AEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 574 --~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~~~~s~~ 640 (1096)
...+..+.+|.. .+..++|++++.+|++|+.|+.|++|+......+..+. ...+...|.+++|+|+
T Consensus 696 ~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 696 INETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred cCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 357788989877 78889999999999999999999999987665443221 1122336899999999
Q ss_pred CCEEEEEECCCcEEEEEc
Q 001343 641 GNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 641 ~~~l~~~~~dg~i~iwd~ 658 (1096)
+..|++|+.||.|++|++
T Consensus 775 ~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 775 SSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCeEEEecCCCcEEEEec
Confidence 999999999999999986
No 58
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=9.1e-30 Score=288.56 Aligned_cols=274 Identities=21% Similarity=0.359 Sum_probs=237.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--c
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--L 482 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~ 482 (1096)
|...|.++.|+++|+++++++.|+.+++|+..+++. .....+.+|...|.+++|+|+++ ++++++.|++|+||| .
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeeccC
Confidence 478999999999999999999999999999977762 22235689999999999999999 999999999999999 4
Q ss_pred CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCC
Q 001343 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
.+..++++++|...|++++|+| +++++++|+.|++|++||+++++....+..|...|++++|+++++++++++.
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~---- 308 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY---- 308 (456)
T ss_pred CCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC----
Confidence 4588999999999999999988 4589999999999999999999999999999999999999999999999976
Q ss_pred CCeEEEEeCCCCe--eeEEEcCcCcc-ceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCC-CCccEEEEe
Q 001343 563 DSFLVEWNESEGT--IKRTYAGFRKK-SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFS 638 (1096)
Q Consensus 563 ~~~i~iwd~~~~~--~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s 638 (1096)
|+.|++||+.++. +...+.++... .+..++|+|++.++++++.|+.+++||+..+.....+..+... ..+.+...+
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccccc
Confidence 9999999999999 67888888775 6899999999999999999999999999999999988887653 234445557
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeE
Q 001343 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
+.+.++++|+.|+.|.+|++.++ ..+..+.++. ...+..+.++|...++
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~h~----~~~~~~~~~~~~~~~~ 437 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSG-GILQRLEGHS----KAAVSDLSSHPTENLI 437 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCcc-chhhhhcCCC----CCceeccccCCCcCee
Confidence 79999999999999999999886 6666677763 2234445555555444
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=2.3e-31 Score=271.24 Aligned_cols=290 Identities=16% Similarity=0.218 Sum_probs=252.0
Q ss_pred cccccCCCCEEEEEEcC-CCCEEEEEECCCeEEEEEccC-CCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcE
Q 001343 400 SIFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAG-SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~sp-d~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i 477 (1096)
..+.||+..|+++.|.| .+.+|++|+.|+.|+||++-. +++++ ++.+|..+|.+++|+++|. .++|+|.|+.+
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~l 282 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFL 282 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceee
Confidence 35889999999999999 899999999999999999977 66666 6889999999999999999 89999999999
Q ss_pred EEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEE
Q 001343 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1096)
Q Consensus 478 ~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 556 (1096)
++|| .+|+++..+. ....++++.|+|++ .+.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+++++.
T Consensus 283 KlwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999 9999999987 45568999999975 4799999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC---eEEEEeecCCCCCCcc
Q 001343 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV---NILTSTDAEGGLPNLP 633 (1096)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~ 633 (1096)
+. ++.+++|+.+.+..++.+..+......++..+|+++++++-+.|+.|.+|.+... .....+.+|...+.-.
T Consensus 361 SD----dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 361 SD----DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC 436 (503)
T ss_pred cc----CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee
Confidence 87 8999999999988887776665557778999999999999999999999997643 2334556666555677
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCC
Q 001343 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSP 713 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~ 713 (1096)
.+.|||||.+|++|..||.+.+||..+. +.+..+..+ ..++..+.|+|....
T Consensus 437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~lkah-----~~~ci~v~wHP~e~S---------------------- 488 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSKLKAH-----DQPCIGVDWHPVEPS---------------------- 488 (503)
T ss_pred eEEEcCCCCeEEeecCCccEEEeechhh-hhhhccccC-----CcceEEEEecCCCcc----------------------
Confidence 8999999999999999999999999887 667777766 345777888876433
Q ss_pred cccCCCCccCCCCCCccccCCCCCcccee
Q 001343 714 IINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (1096)
Q Consensus 714 ~~~~~~~~~s~d~~~l~s~~~dg~i~iw~ 742 (1096)
.+|+++.||.|++|+
T Consensus 489 --------------kvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 489 --------------KVATCGWDGLIKIWD 503 (503)
T ss_pred --------------eeEecccCceeEecC
Confidence 367888899999996
No 60
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.97 E-value=1.2e-28 Score=257.54 Aligned_cols=651 Identities=15% Similarity=0.172 Sum_probs=357.1
Q ss_pred Eeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 339 VSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 339 ~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
-.++ |++.|+.+.|+|-...|||+|+.|..|+||.+..|-... +.-....+.+..-.|.|+.|+|.
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fHpT 139 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFHPT 139 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeecccC
Confidence 3445 999999999999888799999999999999998543221 00011234555678999999997
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceEEEeeCCCC
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEA 495 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~~~~ 495 (1096)
..-|...+..|+++|||+.+++.+. ++.+|...|.++.|+.||+ +|++++.|+.|+||| ..++.++...+|.+
T Consensus 140 aDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H~~ 214 (1012)
T KOG1445|consen 140 ADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGHGG 214 (1012)
T ss_pred cCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCcccccccccc
Confidence 6656656677999999999987766 6889999999999999999 999999999999999 78889999999976
Q ss_pred Ce-EEEEeeecCCCcEEEEEECC----CeEEEEEcCCCCeee-EEeCC-CCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 496 PV-YSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRV-DYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 496 ~v-~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~-~~~~~-~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
.- ..+.| .++-..|++.+.+ ..|++||.+...... .+... ...|.--.|.||.++++.++. ++..++.
T Consensus 215 ~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGK---G~~~l~~ 289 (1012)
T KOG1445|consen 215 MRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGK---GTNKLFM 289 (1012)
T ss_pred chhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecC---CcceEEE
Confidence 42 23445 3344567776655 568999988654332 22222 124666678899999988875 5888888
Q ss_pred EeCCCCeee--EEEcCcCccceEEEEEeCCCCEEEEEEc-C--------------------------------------C
Q 001343 569 WNESEGTIK--RTYAGFRKKSNGVVQFDTTQNHFLAVGE-D--------------------------------------S 607 (1096)
Q Consensus 569 wd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--------------------------------------g 607 (1096)
+.+...+.. ..+...-.......+.-|....-+..++ + +
T Consensus 290 lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~ 369 (1012)
T KOG1445|consen 290 LEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPG 369 (1012)
T ss_pred EEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccC
Confidence 887654321 1111000000011111111100000000 0 0
Q ss_pred -eEEEEeCCCCeEEEEeec------CCC----------------CCCccEEEEeCCCC-EEEEEECCC------------
Q 001343 608 -QIKFWDMDNVNILTSTDA------EGG----------------LPNLPRLRFSKEGN-LLAVTTADN------------ 651 (1096)
Q Consensus 608 -~i~iwd~~~~~~~~~~~~------~~~----------------~~~v~~~~~s~~~~-~l~~~~~dg------------ 651 (1096)
.---|--.+.+.+..... |+. ...|......|... -.-..+ |+
T Consensus 370 ~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~-~~~Pd~~~qpaV~~ 448 (1012)
T KOG1445|consen 370 CTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSS-NNVPDVQEQPAVPK 448 (1012)
T ss_pred cCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccc-cCCCccccCCCcCc
Confidence 000011011111111100 000 00000000000000 000000 00
Q ss_pred --cEEEEEcCCCccccccccCCCccc----ccCcceeEEeecCCCeEEecCCCCcee-EeccCCCcC--CCccc-----C
Q 001343 652 --GFKILANAIGLRSLRAVENPPFEA----LRTPIESVALKVSASSAVSSGTPANCK-VERSSPVRP--SPIIN-----G 717 (1096)
Q Consensus 652 --~i~iwd~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~g~~lv~~~s~~~~~-~~~~~~~~~--~~~~~-----~ 717 (1096)
.++-.+............+..+.. ...++. ..+|....++-..+..... ...-..+.+ .+... +
T Consensus 449 ~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s--~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~ 526 (1012)
T KOG1445|consen 449 KEEVRELDYRPYEKENGVHTPNADADSTQGNSSPIS--TISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVN 526 (1012)
T ss_pred chhhhhhcccccccccCccCCCcccccccCCCCCcc--ccCCCcccccCCCCcccccccccccccCccccccCCCCCCcc
Confidence 000000000000000000000000 000000 0000000000000000000 000000000 00000 0
Q ss_pred CCCccCCCCCCccccCC------CCCccceeeeeee--------cCCceEEEEcCCCCCCcccEEEEEEecCCceEE--E
Q 001343 718 VDPTSRSMDKPRTVDDV------TDKPKPWQLAEIV--------DSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL--A 781 (1096)
Q Consensus 718 ~~~~~s~d~~~l~s~~~------dg~i~iw~~~~~~--------~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~--~ 781 (1096)
....++.......+.+. -|.+.-|..-... ..-.....+++| .. . -|..+...++ .
T Consensus 527 ~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~Pg---Es---n--Gfcan~~rvAVPL 598 (1012)
T KOG1445|consen 527 FGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPG---ES---N--GFCANNKRVAVPL 598 (1012)
T ss_pred cCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCC---cc---C--ceeeccceEEEEe
Confidence 00000111111111110 0111111100000 000001112222 11 1 1233333333 3
Q ss_pred eecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecC-CCcEEEEec-CCeEEEEEc
Q 001343 782 LGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSAT-GGKISLFNM 859 (1096)
Q Consensus 782 ~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~-dg~~la~~~-dg~v~iwd~ 859 (1096)
.+..|.|-||++.....-|+|.+ ++.-....|+.+.|.| |.+.||++. ||.|++|.+
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~---------------------p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~ 657 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVM---------------------PGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRL 657 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccc---------------------cccccCceeeecccCCCChHHeeecccCceEEEEEe
Confidence 45578999999977666555422 2222467899999998 557888888 699999999
Q ss_pred ccce-------EEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCC
Q 001343 860 MTFK-------VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPT 932 (1096)
Q Consensus 860 ~~~~-------~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 932 (1096)
..+. .-..+..|...|+++.|+|--...|++++.|.+|++||+.+++ ....+.||+.
T Consensus 658 ~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~---------------~~~~l~gHtd- 721 (1012)
T KOG1445|consen 658 TANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK---------------LYSRLVGHTD- 721 (1012)
T ss_pred ccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh---------------hhheeccCcC-
Confidence 6543 2356778999999999999666789999999999999999887 4567889998
Q ss_pred CCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCC----cEEEEecCCC
Q 001343 933 GDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG----NIGVFDADTL 1007 (1096)
Q Consensus 933 ~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg----~i~vwd~~~~ 1007 (1096)
.|..++|||||+.+|+ +.|++|++|+..+++....--.+ .....--.+.|..||+++++.+.|. .|.+||..+.
T Consensus 722 qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~g-pvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 722 QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKG-PVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCC-CccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 9999999999999999 99999999999877643222111 1234445678889999988887664 5889998765
Q ss_pred c--eeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCCCCccccCCCC
Q 001343 1008 R--LRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPV 1072 (1096)
Q Consensus 1008 ~--~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~~~~~~~~~~ 1072 (1096)
. .+....... -.+... -.|.++.+-+|++|-.|..|.+|++.....++-.-.|+
T Consensus 801 ~~~pl~t~~lDv--------aps~Lv---P~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f 856 (1012)
T KOG1445|consen 801 DLRPLYTQVLDV--------APSPLV---PHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPF 856 (1012)
T ss_pred cCCcceeeeecc--------cCcccc---ccccCCCceEEEecCCCceEEEEEecCCCceeeecccc
Confidence 4 222221111 111222 25566446678889899999999998877555444443
No 61
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=4e-31 Score=256.90 Aligned_cols=230 Identities=16% Similarity=0.291 Sum_probs=204.5
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~ 484 (1096)
...|.|+.+ |...+++|..|++|+|||.++-.+.+ .+.||++.|.|+.|. .+ +|++|+.|.+|++|| .+|
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccCC
Confidence 457999998 56789999999999999999877776 688999999999985 45 899999999999999 999
Q ss_pred ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCee---eEEeCCCCcEEEEEEcCCCCEEEEEeeccC
Q 001343 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1096)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~ 561 (1096)
+++.++-+|...|..+.|+. .++++++.|.++.+||+...... ..+.+|...|+.+.|+ .+++++++.
T Consensus 268 e~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg--- 338 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG--- 338 (499)
T ss_pred chhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC---
Confidence 99999999999999999842 59999999999999999876543 3567888899999986 459998886
Q ss_pred CCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCC
Q 001343 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1096)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1096)
|.+|++|++.+++.++++.+|.. .|.|+.+ .++++++|+.|.+|++||+..|.++..+++|.. -|.++.| |.
T Consensus 339 -DRTikvW~~st~efvRtl~gHkR-GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRF--d~ 410 (499)
T KOG0281|consen 339 -DRTIKVWSTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DN 410 (499)
T ss_pred -CceEEEEeccceeeehhhhcccc-cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheee--cC
Confidence 99999999999999999999987 6766665 678999999999999999999999999998876 8999999 56
Q ss_pred CEEEEEECCCcEEEEEcCCC
Q 001343 642 NLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 642 ~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+.+++|+.||+|++||+..+
T Consensus 411 krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred ceeeeccccceEEEEecccc
Confidence 79999999999999999776
No 62
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=2e-30 Score=241.15 Aligned_cols=286 Identities=19% Similarity=0.258 Sum_probs=253.4
Q ss_pred EEeecCCCceEEEEEcC---CCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE
Q 001343 338 AVSLHQGSTVISMDFHP---SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1096)
Q Consensus 338 ~~~l~h~~~V~~v~fsp---~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1096)
...-+|+.+|-.++||| +| ++|++++.||.-.+-+-++|.-+.+ |.||++.|+...+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l 67 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATL 67 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeec
Confidence 34457999999999987 56 4899999999999999999988865 8999999999999
Q ss_pred cCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceEEEeeC
Q 001343 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEG 492 (1096)
Q Consensus 415 spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~ 492 (1096)
..+...-|+++.|-+-+|||.-+|..+.. + .|+.-|..++|+.|.+ +|++|+.++.++|+| ....+...+.+
T Consensus 68 ~~na~~aasaaadftakvw~a~tgdelhs---f-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 68 NKNATRAASAAADFTAKVWDAVTGDELHS---F-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred Cchhhhhhhhcccchhhhhhhhhhhhhhh---h-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcC
Confidence 99999999999999999999999988773 2 4888999999999999 899999999999999 44556788999
Q ss_pred CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC
Q 001343 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~ 572 (1096)
|.+.|..+-|... .+.|++.+.|++||+||.+++..+..+... ..|+++.++++|++|.++. .+.|..||..
T Consensus 142 htg~Ir~v~wc~e--D~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~-----gssV~Fwdak 213 (334)
T KOG0278|consen 142 HTGGIRTVLWCHE--DKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAY-----GSSVKFWDAK 213 (334)
T ss_pred CCCcceeEEEecc--CceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEec-----CceeEEeccc
Confidence 9999999999764 368889899999999999999988877654 4699999999999998875 6789999999
Q ss_pred CCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEe-ecCCCCCCccEEEEeCCCCEEEEEECCC
Q 001343 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST-DAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1096)
Q Consensus 573 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg 651 (1096)
+...++.+.... .|.+...+|+...+++|++|..++.||..+++.+..+ .+| .++|.|+.|+|+|...++|+.||
T Consensus 214 sf~~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh--~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 214 SFGLLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH--FGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred cccceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC--CCceEEEEECCCCceeeccCCCc
Confidence 999999888765 4778899999999999999999999999999999886 444 45999999999999999999999
Q ss_pred cEEEEEcCCC
Q 001343 652 GFKILANAIG 661 (1096)
Q Consensus 652 ~i~iwd~~~~ 661 (1096)
+|++|....+
T Consensus 290 TirlWQt~~~ 299 (334)
T KOG0278|consen 290 TIRLWQTTPG 299 (334)
T ss_pred eEEEEEecCC
Confidence 9999998665
No 63
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.6e-28 Score=222.35 Aligned_cols=312 Identities=17% Similarity=0.199 Sum_probs=243.9
Q ss_pred CCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeec-ccceeecccccCccccccccccCCCCEE
Q 001343 332 DLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS-KPFKIWDMAACSLPFQASIFKDVPISVS 410 (1096)
Q Consensus 332 ~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (1096)
....+++.++.....|.+|+|+|.|. +.|+|+...+.+|-....-..++. ++-.. ......-+.-+.|.+.|.
T Consensus 20 k~~f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~-----~pp~v~~kr~khhkgsiy 93 (350)
T KOG0641|consen 20 KKHFEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAK-----QPPSVLCKRNKHHKGSIY 93 (350)
T ss_pred ccceEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccccccccc-----CCCeEEeeeccccCccEE
Confidence 34456678888999999999999999 899999999999876543221110 00000 000001112567899999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEccCC--CccccceeecccccCEEEEEEecCCC--cEEEEEEe-CCCcEEEEE-cCC
Q 001343 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGS--NDLRQHSQIDAHVGAVNDLAFAYPNK--LLCVVTCG-DDKLIKVWE-LSG 484 (1096)
Q Consensus 411 ~l~~spd~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~l~~h~~~v~~l~~s~d~~--~~~l~s~s-~d~~i~iwd-~~~ 484 (1096)
|.+|||+|.+||+|+.|.+|++.-.+.. +....-.++.-|.+.|..++|..+.. ..+|++++ .|..|++-| ..|
T Consensus 94 c~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g 173 (350)
T KOG0641|consen 94 CTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG 173 (350)
T ss_pred EEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC
Confidence 9999999999999999999999766543 32333335788999999999975421 11566654 577888888 999
Q ss_pred ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC-------CCCcEEEEEEcCCCCEEEEEe
Q 001343 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-------PGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
+....+.||.+.|.++- +-++.++++|+.|.+|++||++...++..+.. +...|.++++.|.|++|+++.
T Consensus 174 ~~~~a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~ 250 (350)
T KOG0641|consen 174 QGFHALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH 250 (350)
T ss_pred CcceeecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc
Confidence 99999999999998874 22668999999999999999998888765532 124799999999999999998
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC----eEEEEeecCCCCCCcc
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGGLPNLP 633 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~ 633 (1096)
. +....+||++.++.++.|..|.. .|.++.|+|...++++++.|..|++-|+... -.+.....| ...+.
T Consensus 251 ~----dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh--kdk~i 323 (350)
T KOG0641|consen 251 A----DSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH--KDKAI 323 (350)
T ss_pred C----CCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec--cCceE
Confidence 7 88999999999999999999988 8999999999999999999999999998642 122333333 44788
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 634 RLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
.+.|+|..--+++.+.|.++.+|-+.
T Consensus 324 ~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 324 QCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEecCccceeeeccCcceEEEeccC
Confidence 99999999899999999999999763
No 64
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.6e-29 Score=231.83 Aligned_cols=247 Identities=19% Similarity=0.256 Sum_probs=221.9
Q ss_pred ccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEE
Q 001343 399 ASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 399 ~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~ 478 (1096)
.+++..|+++|.++.|+-||+|.++|+.|.+|++|+...|.+++ ++.+|...|..++.+.|+. .+++|+.|+.|.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~ 84 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQ 84 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEE
Confidence 34588899999999999999999999999999999999998888 6889999999999999998 899999999999
Q ss_pred EEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC--CeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM--GSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 479 iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
+|| .+|+.++.|++|.+.|+.+.|+. +...+++|+.|.++++||-+.. +++..+......|.++.++ +..+++
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIva 160 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVA 160 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEe
Confidence 999 99999999999999999999965 5679999999999999998754 4455666666788888875 457888
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEE
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1096)
|+. ||+++.||++.|+...-+-++ +|++++|+++++..++++-|+++++.|-.+|++++.+.+|.....-..+
T Consensus 161 GS~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 161 GSV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred ecc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 887 999999999999887776665 8999999999999999999999999999999999999998876556677
Q ss_pred EEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 636 RFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 636 ~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+++.....+++|+.||.|.+||+.+.
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccc
Confidence 88888889999999999999999776
No 65
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.5e-28 Score=299.54 Aligned_cols=270 Identities=15% Similarity=0.207 Sum_probs=218.2
Q ss_pred CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC----Ccc
Q 001343 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS----NDL 441 (1096)
Q Consensus 366 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~----~~~ 441 (1096)
+|.+++|+..+.+.... + ...-+..|.+.|.+++|+|+|++||+|+.|+.|+||+.... ...
T Consensus 457 ~gl~~~~~~~~~~~~~~--~------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKAD--L------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEe--e------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 67888888876544321 0 11124569999999999999999999999999999997642 111
Q ss_pred c-cceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCe
Q 001343 442 R-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGK 519 (1096)
Q Consensus 442 ~-~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 519 (1096)
. ....+ .+...|.+++|++.... +|++++.||+|++|| .+++.+..+.+|...|++++|++. ++.+|++|+.||+
T Consensus 523 ~~~~~~~-~~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVEL-ASRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEe-cccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 11122 34568999999986433 899999999999999 888899999999999999999864 4579999999999
Q ss_pred EEEEEcCCCCeeeEEeCCCCcEEEEEEc-CCCCEEEEEeeccCCCCeEEEEeCCCCe-eeEEEcCcCccceEEEEEeCCC
Q 001343 520 IKAWLYDTMGSRVDYDAPGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQ 597 (1096)
Q Consensus 520 i~iwd~~~~~~~~~~~~~~~~i~~l~~s-~~~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~ 597 (1096)
|++||++++.....+..+ ..+.++.|+ ++|.++++++. ++.|++||+++++ .+..+.+|.. .+..+.|. ++
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~ 672 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DS 672 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CC
Confidence 999999988877777654 578899995 57899999987 9999999998765 5677788877 88899997 67
Q ss_pred CEEEEEEcCCeEEEEeCCCC------eEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 598 NHFLAVGEDSQIKFWDMDNV------NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
..+++++.|+.|++||+..+ ..+..+.+|.. .+..++|+|++.+|++|+.|+.|++|+....
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~--~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN--VKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC--CeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 89999999999999999743 45667766654 7899999999999999999999999997544
No 66
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=3.6e-28 Score=264.73 Aligned_cols=246 Identities=24% Similarity=0.402 Sum_probs=219.8
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+.+|.+.|.+++|+|++++|++++.||.|++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 67899999999999999999999999999999999876544 5678999999999999998 899999999999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
..++.+..+..|...+.++.|++. +.++++++.||.+++||+++.+....+..+...+.++.|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 777888889999999999999774 578888888999999999988888888888889999999999999888875
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCC
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1096)
++.+++||+.+++.+..+..+.. .+.++.|+|+++.+++++.++.|++||+..++.+..+..+.. .+.++.|+|+
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~ 230 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSPD 230 (289)
T ss_pred --CCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ceEEEEEcCC
Confidence 88999999999999988887766 788999999999999999999999999999888887765544 8999999999
Q ss_pred CCEEEEEECCCcEEEEEcCCC
Q 001343 641 GNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 641 ~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+.++++++.|+.|++|++.++
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCc
Confidence 888888888999999998654
No 67
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=3.4e-30 Score=257.19 Aligned_cols=293 Identities=17% Similarity=0.230 Sum_probs=254.7
Q ss_pred CCCCcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCE
Q 001343 331 DDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1096)
Q Consensus 331 ~~~~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (1096)
+.+|......+. |.++|..+.|-++.. .|++|+.|..|++|++..++.-. ..++.|..+.|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCCc
Confidence 456777777788 999999999999977 59999999999999998766221 12478888999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEE
Q 001343 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1096)
Q Consensus 410 ~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~ 488 (1096)
+.+.|.++++++++++.|+.+++|+++..+... +|.||.+.|+++.|..... .+++|+.|.+|++|| ....|.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999977666 6889999999999998776 699999999999999 7788877
Q ss_pred EeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 489 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
++. ....+..|+.. ...+++|-.|++||+||.+..........++ .|+++..+++|..+++++. |..+.+
T Consensus 298 t~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v 367 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV 367 (459)
T ss_pred ccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence 764 23446666653 3578999999999999999999988887776 8999999999999999987 899999
Q ss_pred EeCCCCeeeEEEcCcCc---cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEE
Q 001343 569 WNESEGTIKRTYAGFRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1096)
Q Consensus 569 wd~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 645 (1096)
.|+++.+....+..... ...+.+.|+|++.++++|+.||.|+||++.++++...+........|++++|+|.|..++
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 99999998888865432 246779999999999999999999999999999999998877655799999999999999
Q ss_pred EEECCCcEEEE
Q 001343 646 VTTADNGFKIL 656 (1096)
Q Consensus 646 ~~~~dg~i~iw 656 (1096)
+++.++.+.+|
T Consensus 448 sadk~~~v~lW 458 (459)
T KOG0288|consen 448 SADKQKAVTLW 458 (459)
T ss_pred cccCCcceEec
Confidence 99999999999
No 68
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=8.9e-29 Score=244.57 Aligned_cols=289 Identities=19% Similarity=0.335 Sum_probs=243.3
Q ss_pred CCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEE
Q 001343 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1096)
Q Consensus 333 ~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1096)
.+.+....+.|.+.|.+|... ++ .+.+|+.||.++|||.. |+.... +.||.++|.++
T Consensus 94 ~aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~~-------------------~~Ght~~ik~v 150 (423)
T KOG0313|consen 94 TAPKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIKT-------------------IVGHTGPIKSV 150 (423)
T ss_pred CCCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEEE-------------------EecCCcceeee
Confidence 455667778899999999998 45 68999999999999976 665543 88999999988
Q ss_pred EEcCCC---CEEEEEECCCeEEEEEccCCCcc-ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC---
Q 001343 413 AWSPDG---NYVGVAFTKHLIQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG--- 484 (1096)
Q Consensus 413 ~~spd~---~~l~s~~~dg~i~vwd~~~~~~~-~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~--- 484 (1096)
+|--.. ..+++++.|.++++|.++.+... .....-.||...|-++...++|. .+++|+.|.+++||+ ...
T Consensus 151 ~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~ 228 (423)
T KOG0313|consen 151 AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEED 228 (423)
T ss_pred EEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccc
Confidence 885433 36999999999999999877543 22223459999999999999999 899999999999998 211
Q ss_pred ----------------------ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEE
Q 001343 485 ----------------------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCT 542 (1096)
Q Consensus 485 ----------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 542 (1096)
.++.++.||..+|.++.|.+ ...+++++.|.+|+.||+.+++....+.. +..+.
T Consensus 229 ~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~ 304 (423)
T KOG0313|consen 229 ELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLN 304 (423)
T ss_pred cccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeec-Cccee
Confidence 24567889999999999975 35899999999999999999888776654 45699
Q ss_pred EEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe---eeEEEcCcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCCCe
Q 001343 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 543 ~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 618 (1096)
++.++|..++|++++. +..+++||.+++. ..++|.+|.+ -|..+.|+|.. ..|++|+.|+++++||+++..
T Consensus 305 ~i~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 305 CISYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred EeecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 9999999999999998 9999999998753 5677899988 89999999966 467889999999999999877
Q ss_pred -EEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 619 -ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 619 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
++..+..|.. .|.++.|+ ++..+++|+.|++|+|+.-
T Consensus 380 ~plydI~~h~D--Kvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 380 APLYDIAGHND--KVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CcceeeccCCc--eEEEEecc-CCceEEeccCcceEEEecc
Confidence 8888888865 89999997 5669999999999999864
No 69
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.5e-28 Score=235.76 Aligned_cols=309 Identities=14% Similarity=0.203 Sum_probs=240.9
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 338 ~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
.....|+.++.|.+|||||. ++|+|+.|.+|+|.|++..--.. ....+..-......-..+.+..|...|+++.|+|.
T Consensus 106 ~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred EEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 34446999999999999999 89999999999999987311000 00000001111111112358899999999999999
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe---eCC
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF---EGH 493 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~---~~~ 493 (1096)
...|++|+.|++|+++|+......+.++.+ ....+|.++.|+|.|. +|+.|..-.++++|| .+-++...- .+|
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCccccc
Confidence 999999999999999999765444433333 3567899999999999 899999999999999 666665443 579
Q ss_pred CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe-CCCC-cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC
Q 001343 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGH-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~-~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~ 571 (1096)
.+.|+++.+++ .+.+.++++.||.|++||--+..++..+. .|++ .|.+..|+.+|+++++.+. |..+++|.+
T Consensus 261 t~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkLWEi 334 (430)
T KOG0640|consen 261 TGAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKLWEI 334 (430)
T ss_pred ccceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeeeeee
Confidence 99999999966 66899999999999999988887776553 3443 8999999999999999987 999999999
Q ss_pred CCCeeeEEEcCcCcc----ceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEE
Q 001343 572 SEGTIKRTYAGFRKK----SNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 572 ~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 646 (1096)
.+++++..+.|.... --+...|+....+++.-. ..+.++-||.++...+..+.. +|.+.+..+.-+|.+..+++
T Consensus 335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~FmT 413 (430)
T KOG0640|consen 335 STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPAFMT 413 (430)
T ss_pred cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCceee
Confidence 999999999875210 112245677777777654 457899999999877766653 34558999999999999999
Q ss_pred EECCCcEEEEEc
Q 001343 647 TTADNGFKILAN 658 (1096)
Q Consensus 647 ~~~dg~i~iwd~ 658 (1096)
++.|..+++|--
T Consensus 414 csdD~raRFWyr 425 (430)
T KOG0640|consen 414 CSDDFRARFWYR 425 (430)
T ss_pred ecccceeeeeee
Confidence 999999999964
No 70
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=8.1e-29 Score=233.15 Aligned_cols=288 Identities=12% Similarity=0.145 Sum_probs=240.1
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 338 ~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
+...+|+.+++-+.|+.+|. ||.++++|.++.||--.+|+.+.+ +.||++.|+|++.+.+
T Consensus 4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWD 63 (327)
T ss_pred cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCC
Confidence 44556999999999999999 899999999999999999999875 8999999999999999
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC-----CCcEEEEE-c-------CC
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----DKLIKVWE-L-------SG 484 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~-----d~~i~iwd-~-------~~ 484 (1096)
.++|++|+.|.++++||+++|+++... .-..+|..+.|+++|. +++.+.. .+.|.++| . ..
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~~----k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLATW----KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEEe----ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 999999999999999999999988743 3567899999999999 5554433 36789998 4 34
Q ss_pred ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEeCCCCcEEEEEEcCCCCEEEEEeeccCCC
Q 001343 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~ 563 (1096)
++...+..+...++.+.|.|. +++|++|..||.|.+||++++.... .-..|...|+.+++++|..++++++. |
T Consensus 138 ep~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----D 211 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----D 211 (327)
T ss_pred CceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----C
Confidence 567788888899999999775 4799999999999999999976655 55778889999999999999999998 9
Q ss_pred CeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCe--EE------------EEeCCCCeEEEEeecCCCC
Q 001343 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ--IK------------FWDMDNVNILTSTDAEGGL 629 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~--i~------------iwd~~~~~~~~~~~~~~~~ 629 (1096)
.+-++||..+...++++.... ++++.+++|...+++.|+...- |. +|++-..+.+..+.+| .
T Consensus 212 ttakl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH--F 287 (327)
T KOG0643|consen 212 TTAKLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH--F 287 (327)
T ss_pred ccceeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--c
Confidence 999999999999999998754 7999999998888888763221 21 2222222334444444 5
Q ss_pred CCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
++|++++|+|+|+..++|+.||.|++......
T Consensus 288 GPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 288 GPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred cCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 59999999999999999999999999866443
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.5e-28 Score=248.80 Aligned_cols=282 Identities=20% Similarity=0.286 Sum_probs=240.6
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
..+.|.+++|||...+=+|+. ..-.+.||+..+...... +......|.++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEe-cccEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEEE
Confidence 456899999999877555554 356899999887665532 444667899999999999999
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~ 501 (1096)
+|...|.|+|||+.+...++ .+.+|..+|..+.|+|++.. .+++|++|+.+++|| .+......+.+|++.|.+.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999977644455 57899999999999998886 899999999999999 55565568899999999999
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC-eeeEEE
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKRTY 580 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~ 580 (1096)
++|. ++.++++|+.||+|++||.+.......--.|+.+|.++.+-|.|..+++++ ...+++||+.+| +.+..+
T Consensus 161 ~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 9986 457999999999999999998865555557888999999999999999987 779999999855 555555
Q ss_pred cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 581 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
..|.. .|+|+++..++..|++++-|+.+++||+.+.+.+..+...+ +|.+++.+|++..++.|..+|.+.+-+.
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeeeehh
Confidence 55776 99999999999999999999999999999989988887655 7999999999999999999998877543
No 72
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.7e-28 Score=275.95 Aligned_cols=305 Identities=18% Similarity=0.267 Sum_probs=249.0
Q ss_pred CCCceEEEEEcCCCCcEEEEEe--CCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 420 (1096)
++..|.+++.+|||. .+|||+ .||.++||+.+.--.. .+.++.. .+........|.+.|+|+.|+|||+|
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~----~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDE----KEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccch----hhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 456799999999999 599999 8999999997531100 0111111 22222346789999999999999999
Q ss_pred EEEEECCCeEEEEEccC----------C-----CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC
Q 001343 421 VGVAFTKHLIQLYSYAG----------S-----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~----------~-----~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~ 484 (1096)
||+|+.|+.|.||.... | +..+....+.+|...|..++|+|++. +|++++.|++|.+|| .+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999873 0 11234456889999999999999999 999999999999999 899
Q ss_pred ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC------CCcEEEEEEcCCCCEEEEEee
Q 001343 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------GHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
+.+..+++|.+.|..+.|.| -|++|++-+.|++|++|+....+.......+ ...+..+.|||||.+|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 99999999999999999976 6699999999999999997765555544333 225788999999999999876
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC-----CC------------EEEEEEcCCeEEEEeCCCCeEEE
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-----QN------------HFLAVGEDSQIKFWDMDNVNILT 621 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~------------~l~~~~~dg~i~iwd~~~~~~~~ 621 (1096)
-+.+...+.|.+-.+.+.-..+-||.. ++.++.|+|. .. .+++|+.|++|-||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 666678899999999999999999998 9999999972 11 56789999999999998777766
Q ss_pred EeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.+..-.. ..|.+++|+|||..|++++.||+|.++.+...
T Consensus 319 vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 5543322 28999999999999999999999999998754
No 73
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3.1e-27 Score=221.96 Aligned_cols=274 Identities=15% Similarity=0.218 Sum_probs=237.5
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~ 420 (1096)
+|...|.+|+|+-+|.+ ||+|+.|+++.||+++..+.... -...+|.+.|..++|+| ....
T Consensus 18 ~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d~ 79 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPDL 79 (313)
T ss_pred hhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCcc
Confidence 48889999999999994 99999999999999998754432 23778999999999998 5678
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEE
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~ 499 (1096)
+++++.|.+|++||+..+++.... . .++.=..+.|+|+|. +++.++.|..|...| .+.+.....+ ....+.-
T Consensus 80 ~atas~dk~ir~wd~r~~k~~~~i---~-~~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne 152 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKCTARI---E-TKGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNE 152 (313)
T ss_pred eEEecCCceEEEEEeccCcEEEEe---e-ccCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceeee
Confidence 999999999999999999887743 2 334445688999999 899999999999999 6666555444 4456778
Q ss_pred EEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEE
Q 001343 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1096)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 579 (1096)
++|+. ++++++.....|+|.|..+...+.+..+..|...+.++.|+|+|+++++|+. |..+.+||+...-+++.
T Consensus 153 ~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R~ 226 (313)
T KOG1407|consen 153 ISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICERC 226 (313)
T ss_pred eeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhhee
Confidence 88874 4457777777899999999999999999999999999999999999999998 99999999999999999
Q ss_pred EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC
Q 001343 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
+..+.- +|..+.|+.+|++|+++++|..|-|=++++|..+..+...+ +...++|+|...+||.+++|
T Consensus 227 isRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 227 ISRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 988876 89999999999999999999999999999999999988655 67899999999999998876
No 74
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2e-27 Score=266.52 Aligned_cols=281 Identities=18% Similarity=0.303 Sum_probs=248.6
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.|...|.|..|+ ++ ++++|+.|.+|++||..++..+.. .+.||.+.|.++++..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 477889999999 44 589999999999999999887752 288999999999999888999
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEE
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~ 500 (1096)
++|+.|.+++|||+.+|++.. ++.+|.+.|.++...+. .+++|+.|.+|++|+ .++.++..+.+|.++|.++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999999888 68899999999998654 789999999999999 8899999999999999999
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC-eeeEE
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKRT 579 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~ 579 (1096)
..+ +.++++|+.||+|++||+.+.+++..+.+|...|.++.+.+. ..+++|+. |+.|++||+.+. +++.+
T Consensus 338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhh
Confidence 874 479999999999999999999999999999999999988766 88999998 899999999999 99999
Q ss_pred EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
+.+|.. .+..+. ..++++++++.|++|++||..+++++..+... +...|..+++. ...+++++.||.+++||+.
T Consensus 409 l~~h~~-~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 409 LQGHTS-LVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred hcCCcc-cccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEecc
Confidence 999987 554443 35789999999999999999999999999885 33367777765 4689999999999999999
Q ss_pred CCccccc
Q 001343 660 IGLRSLR 666 (1096)
Q Consensus 660 ~~~~~~~ 666 (1096)
++ ...+
T Consensus 483 ~~-~~~~ 488 (537)
T KOG0274|consen 483 SG-TLIR 488 (537)
T ss_pred cC-chhh
Confidence 88 3433
No 75
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1.2e-28 Score=229.27 Aligned_cols=284 Identities=15% Similarity=0.214 Sum_probs=245.2
Q ss_pred ccccCCCCEEEEEEcC---CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcE
Q 001343 401 IFKDVPISVSRVAWSP---DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~sp---d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i 477 (1096)
+..||+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+. ++.||++.|+....+.+.. ..++++.|-+.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadfta 83 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTA 83 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchh
Confidence 4788999999999997 89999999999988888888887776 7899999999999998877 78999999999
Q ss_pred EEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe-eeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 478 ~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
++|| .+|..+.+|. |..-|.+++|+. |.++|++|+.+..+|+||++..+. ...+.+|.+.|..+.|....+.+++
T Consensus 84 kvw~a~tgdelhsf~-hkhivk~~af~~--ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 84 KVWDAVTGDELHSFE-HKHIVKAVAFSQ--DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILS 160 (334)
T ss_pred hhhhhhhhhhhhhhh-hhheeeeEEecc--cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEe
Confidence 9999 9999999987 888899999955 678999999999999999987654 4578899999999999998899998
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEE
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1096)
... ++.|++||.+++..++++.... .+.++.++++|+++.++ ..+.|.+||.++..+++.+.... .|.+.
T Consensus 161 Sad----d~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~---nV~SA 230 (334)
T KOG0278|consen 161 SAD----DKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPC---NVESA 230 (334)
T ss_pred ecc----CCceEEEEeccCcEEEEEecCC--CCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCcc---ccccc
Confidence 765 9999999999999999988654 68889999998766554 55789999999999998887664 68999
Q ss_pred EEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcc
Q 001343 636 RFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII 715 (1096)
Q Consensus 636 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~ 715 (1096)
..+|+...+++|+.|..++.||..++.+...-..+ +.++|.++.|+|+|..
T Consensus 231 SL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkg-----h~gpVhcVrFSPdGE~------------------------ 281 (334)
T KOG0278|consen 231 SLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKG-----HFGPVHCVRFSPDGEL------------------------ 281 (334)
T ss_pred cccCCCceEEecCcceEEEEEeccCCceeeecccC-----CCCceEEEEECCCCce------------------------
Confidence 99999999999999999999999999543332233 3567888888776654
Q ss_pred cCCCCccCCCCCCccccCCCCCccceeee
Q 001343 716 NGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (1096)
Q Consensus 716 ~~~~~~~s~d~~~l~s~~~dg~i~iw~~~ 744 (1096)
.++|+.||+|++|...
T Consensus 282 -------------yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 282 -------------YASGSEDGTIRLWQTT 297 (334)
T ss_pred -------------eeccCCCceEEEEEec
Confidence 4899999999999976
No 76
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4e-27 Score=226.03 Aligned_cols=273 Identities=17% Similarity=0.261 Sum_probs=224.1
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCC-CeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR-DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
-.+.|.+++|||....+++.||-||+|++|+++.. ...- +....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 35689999999966668889999999999999874 3321 2356799999999999999999
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEE
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~ 500 (1096)
++|+.|+.+++||+.+++.. .+..|.++|.++.|-+...+-.|+|||.|++|+.|| ....++.++. -.++++++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998644 377899999999998876655899999999999999 8888888876 45678887
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe--CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC--ee
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TI 576 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~--~~ 576 (1096)
..- -.+++++..++.|.+|++++........ .-.-.+.+++..+|....+.|+. +|.+.+..+..+ +.
T Consensus 163 Dv~----~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DVL----YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hcc----CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 653 2588999999999999997665544222 12337899999998888888887 899998888776 55
Q ss_pred eEEEcCcCc--------cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEE
Q 001343 577 KRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1096)
Q Consensus 577 ~~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1096)
-.+|+.|+. ..|+.++|+|....|+++|.||++.+||-+....+...+.+.. +|++++|+.+|.++|.+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q--pItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ--PITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC--ccceeEecCCCCEEEEEe
Confidence 566777763 2466799999999999999999999999988888877776655 999999999999888664
No 77
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.4e-28 Score=235.28 Aligned_cols=288 Identities=15% Similarity=0.227 Sum_probs=240.2
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccce-----eecccccCEEEEEEecCCCcEEEEEEeCCCcE
Q 001343 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS-----QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 403 ~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i 477 (1096)
-+.++-+.|..|||||+||++|+.||.|.|||..+|+.-+.++ .+--+..+|.|+.|+.|.. .+++|+.||.|
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--MlAsGsqDGkI 287 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--MLASGSQDGKI 287 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--HhhccCcCCcE
Confidence 3556779999999999999999999999999999987654321 2345788999999999999 89999999999
Q ss_pred EEEE-cCCceEEEee-CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 478 KVWE-LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 478 ~iwd-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
++|. .+|.|++.|. .|+..|+++.|+. |+..+++++.|.++|+.-+.+++.+..+.+|...|+...|++||..+++
T Consensus 288 KvWri~tG~ClRrFdrAHtkGvt~l~FSr--D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iis 365 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFDRAHTKGVTCLSFSR--DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIIS 365 (508)
T ss_pred EEEEEecchHHHHhhhhhccCeeEEEEcc--CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEE
Confidence 9999 9999999996 8999999999965 6678999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcC-ccceEEEEEeC-CCCEEEEEEcCCeEEEEeCCCCeEEEEeec-CCCCCCc
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDA-EGGLPNL 632 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v 632 (1096)
++. |++|++|+.++.+++.+|+... +..+..+..-| +...++++...++|+|.++ .|+.+..+.. ....+..
T Consensus 366 aSs----DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdF 440 (508)
T KOG0275|consen 366 ASS----DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDF 440 (508)
T ss_pred ecC----CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCce
Confidence 998 9999999999999999987543 33566665555 5578999999999999998 4667766653 3333456
Q ss_pred cEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCC
Q 001343 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1096)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~ 712 (1096)
.++..+|.|.++++.+.|+.++.|...+| ...+.+..+...+. .++-
T Consensus 441 i~~~lSpkGewiYcigED~vlYCF~~~sG-~LE~tl~VhEkdvI-----Gl~H--------------------------- 487 (508)
T KOG0275|consen 441 INAILSPKGEWIYCIGEDGVLYCFSVLSG-KLERTLPVHEKDVI-----GLTH--------------------------- 487 (508)
T ss_pred EEEEecCCCcEEEEEccCcEEEEEEeecC-ceeeeeeccccccc-----cccc---------------------------
Confidence 77889999999999999999999999888 55555555543311 1222
Q ss_pred CcccCCCCccCCCCCCccccCCCCCcccee
Q 001343 713 PIINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (1096)
Q Consensus 713 ~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~ 742 (1096)
.|..+++|+-+.||.+++|.
T Consensus 488 ----------HPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 488 ----------HPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ----------CcccchhhhhcccchhhhcC
Confidence 34556778899999999995
No 78
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=2.7e-26 Score=257.86 Aligned_cols=287 Identities=13% Similarity=0.100 Sum_probs=224.0
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYV 421 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l 421 (1096)
|-..|....+++++.. +++++.+..+..|+...+..+. +.......+.....+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 4456788888889774 6677788888899876554321 11111111111234789999999999999 89999
Q ss_pred EEEECCCeEEEEEccCCCc----cccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCC
Q 001343 422 GVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~----~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~ 496 (1096)
++|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++|+.|++|+||| .+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999986532 1223468899999999999998643 899999999999999 888899999999999
Q ss_pred eEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCc-EEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe
Q 001343 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1096)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1096)
|.+++|++ ++.+|++++.||+|++||+++++....+..|.+. +..+.|.+++..+++++.+...++.|++||+++..
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 99999987 6689999999999999999999888888877663 45778899988888877655558999999998754
Q ss_pred -eeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCC
Q 001343 576 -IKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 576 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1096)
.......+....+....|+++++.+++++ .|+.|++||+.+++.+....... ...+..++|.|.
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk 314 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPK 314 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEeccc
Confidence 44444444443566678899999999887 59999999999998877655432 336788888885
No 79
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=6.9e-27 Score=231.29 Aligned_cols=283 Identities=18% Similarity=0.310 Sum_probs=234.9
Q ss_pred ccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEEEEeeecCC-CcEEEEEECCCeEEEEEcCC
Q 001343 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDT 527 (1096)
Q Consensus 449 ~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~ 527 (1096)
.|.+.|.++... ++ .|++|+.||.+++||..|+.+..+.||.++|.+++|..... ...+++++.|.++++|-++.
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 488999999887 45 89999999999999999999999999999999888764432 24699999999999999887
Q ss_pred CCeee----EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC-------------------------CCeeeE
Q 001343 528 MGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-------------------------EGTIKR 578 (1096)
Q Consensus 528 ~~~~~----~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~-------------------------~~~~~~ 578 (1096)
+.... ...+|...|.++...++|..+++++. |..|.+|+.. ++.++.
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 65543 33488889999999999999999998 9999999932 234567
Q ss_pred EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 579 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
++.||.+ +|..+.|++ ...+++++.|.+|+.||+.++.....+.... .++++..+|..++|++|+.|..|++||.
T Consensus 255 tl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 255 TLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred Eeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecCC
Confidence 7889988 899999988 6789999999999999999999988887654 6899999999999999999999999998
Q ss_pred CCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCc
Q 001343 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (1096)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i 738 (1096)
+++.
T Consensus 330 R~~~---------------------------------------------------------------------------- 333 (423)
T KOG0313|consen 330 RTGD---------------------------------------------------------------------------- 333 (423)
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 6650
Q ss_pred cceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCcc
Q 001343 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 818 (1096)
Q Consensus 739 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~ 818 (1096)
+.....
T Consensus 334 -----------gs~v~~--------------------------------------------------------------- 339 (423)
T KOG0313|consen 334 -----------GSVVSQ--------------------------------------------------------------- 339 (423)
T ss_pred -----------CceeEE---------------------------------------------------------------
Confidence 000111
Q ss_pred ccccccccCCCcCCCeeeeeecCCC-cEEEEec-CCeEEEEEcccce-EEEeecCCCCCeeEEEEecCCCcEEEEeeCCC
Q 001343 819 LLMANDVAGVNLEEAVPCIALSKND-SYVMSAT-GGKISLFNMMTFK-VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1096)
Q Consensus 819 ~~~~~~~~g~~~~~~v~~l~~s~dg-~~la~~~-dg~v~iwd~~~~~-~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg 895 (1096)
.+.| |...|.++.++|.. ..|++|+ |+++++||+++.+ .+..+.+|...|.++.|.. +..+++|+.|+
T Consensus 340 -----s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~~~IvSGGaD~ 410 (423)
T KOG0313|consen 340 -----SLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGLIVSGGADN 410 (423)
T ss_pred -----eeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--CceEEeccCcc
Confidence 1223 77777777887766 4566777 8999999998776 7888999999999999986 66999999999
Q ss_pred eEEEEeec
Q 001343 896 TIHIYNVR 903 (1096)
Q Consensus 896 ~i~iw~~~ 903 (1096)
+|+|+.-.
T Consensus 411 ~l~i~~~~ 418 (423)
T KOG0313|consen 411 KLRIFKGS 418 (423)
T ss_pred eEEEeccc
Confidence 99998643
No 80
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=8.8e-27 Score=219.52 Aligned_cols=233 Identities=14% Similarity=0.233 Sum_probs=204.0
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
.++||..+++.+.++.+|.+|.+|+.|.++.||-..+|+.+. ++.||.+.|+|+....+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 488999999999999999999999999999999988888777 6899999999999999999 89999999999999
Q ss_pred E-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEE-----CCCeEEEEEcC-------CCCeeeEEeCCCCcEEEEEEc
Q 001343 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-----IDGKIKAWLYD-------TMGSRVDYDAPGHWCTTMLYS 547 (1096)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-----~dg~i~iwd~~-------~~~~~~~~~~~~~~i~~l~~s 547 (1096)
| .+|+++..++ ...+|..+.|++ +|++++... ..+.|.++|++ ..++...+..+...++.+.|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 9 9999999988 567899999977 445666554 34679999988 445566777788899999999
Q ss_pred CCCCEEEEEeeccCCCCeEEEEeCCCCee-eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC
Q 001343 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1096)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1096)
|-+++|++|.. +|.|.+||.++|+. +.....|.. .|+.++++++..++++++.|.+-++||..+-+.++++...
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence 99999999987 99999999999854 455566665 8999999999999999999999999999999999998765
Q ss_pred CCCCCccEEEEeCCCCEEEEEEC
Q 001343 627 GGLPNLPRLRFSKEGNLLAVTTA 649 (1096)
Q Consensus 627 ~~~~~v~~~~~s~~~~~l~~~~~ 649 (1096)
. +|++.+++|-...++.|+.
T Consensus 232 ~---PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 232 R---PVNTAAISPLLDHVILGGG 251 (327)
T ss_pred c---cccceecccccceEEecCC
Confidence 4 7999999997777777654
No 81
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=2.3e-27 Score=243.09 Aligned_cols=301 Identities=18% Similarity=0.263 Sum_probs=233.7
Q ss_pred CCcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEE
Q 001343 333 LPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1096)
Q Consensus 333 ~~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1096)
.|......+. |+..|.++++.|.|.+ |++|+.|.+|++||+........ .++ .+.......|.+
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr-------------~l~P~E~h~i~s 219 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFR-------------QLQPCETHQINS 219 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhh-------------ccCcccccccce
Confidence 3444455555 7889999999999996 99999999999999976443221 111 112234558999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEccCCCc---------cccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-
Q 001343 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSND---------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1096)
Q Consensus 412 l~~spd~~~l~s~~~dg~i~vwd~~~~~~---------~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd- 481 (1096)
+.||+.|..|++.+.....+|+|-+..+. ++....-+||...++|.+|+|+.+. .++|++.||+++|||
T Consensus 220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv 298 (641)
T KOG0772|consen 220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDV 298 (641)
T ss_pred eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEec
Confidence 99999999999888888999999765432 2333345799999999999999887 899999999999999
Q ss_pred cCC-ceEEEee-----CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCee---eEEeCCCC--cEEEEEEcCCC
Q 001343 482 LSG-RKLFNFE-----GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGH--WCTTMLYSADG 550 (1096)
Q Consensus 482 ~~~-~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~--~i~~l~~s~~~ 550 (1096)
.+. +.+..++ +..-+++.++|++ ++.+|++|+.||.|.+|+....... ..-..|.. .|+++.||+||
T Consensus 299 ~~~k~q~qVik~k~~~g~Rv~~tsC~~nr--dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 299 NNTKSQLQVIKTKPAGGKRVPVTSCAWNR--DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred CCchhheeEEeeccCCCcccCceeeecCC--CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence 333 3333332 3455788899976 7789999999999999997544332 23345554 89999999999
Q ss_pred CEEEEEeeccCCCCeEEEEeCCCCe-eeEEEcCcCc-cceEEEEEeCCCCEEEEEE------cCCeEEEEeCCCCeEEEE
Q 001343 551 SRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRK-KSNGVVQFDTTQNHFLAVG------EDSQIKFWDMDNVNILTS 622 (1096)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~ 622 (1096)
++|++-+. |..+++||++..+ ++....+... ..-+.++|+|+.+.|++|+ ..|.+++||..+.+.++.
T Consensus 377 ~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k 452 (641)
T KOG0772|consen 377 NYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK 452 (641)
T ss_pred chhhhccC----CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE
Confidence 99999887 9999999998754 4444443322 2445589999999999986 457899999999999999
Q ss_pred eecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEE
Q 001343 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1096)
Q Consensus 623 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 657 (1096)
+..... .|..+.|+|.-+.|++|+.||.+++|-
T Consensus 453 i~i~~a--Svv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 453 IDISTA--SVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred ecCCCc--eEEEEeecchhhheeeecCCCceEEEE
Confidence 887754 889999999999999999999999874
No 82
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.7e-27 Score=261.18 Aligned_cols=299 Identities=15% Similarity=0.222 Sum_probs=218.7
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC---CC
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP---DG 418 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---d~ 418 (1096)
.|+++|+|+.||+||+ |||+|+.|+.|+||.+...+........ ....+.. +. -.+.+..+.-++ .+
T Consensus 265 ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~------~~~~~~~--~~-~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEGD------SSCMYFE--YN-ANSQIEPSTSSEEKISS 334 (712)
T ss_pred ccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccccc------cchhhhh--hh-hccccCccccccccccc
Confidence 4999999999999999 6999999999999999764432110000 0000000 00 000111111111 01
Q ss_pred C--EEEEEECCCeEEEEEccCC-CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCC
Q 001343 419 N--YVGVAFTKHLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1096)
Q Consensus 419 ~--~l~s~~~dg~i~vwd~~~~-~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~ 494 (1096)
+ ..-.+.....+ +.+.... -.-+.+..+.||.+.|.++.|+.++ +|+++|.|++|++|+ ....|+..|. |.
T Consensus 335 ~~s~~~~~~~s~~~-~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hn 409 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCV-LLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HN 409 (712)
T ss_pred cccccccccCCccc-cCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cC
Confidence 1 11122222222 2221111 1112334688999999999999876 799999999999999 8888999987 99
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
..|+|++|+|..| +++++|+-||.||||++...+...-...+ .-|++++|.|||++.++|+. +|.+++|+....
T Consensus 410 dfVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~l 483 (712)
T KOG0283|consen 410 DFVTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGL 483 (712)
T ss_pred CeeEEEEecccCC-CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEe----ccEEEEEEccCC
Confidence 9999999999854 89999999999999999866655544444 67999999999999999998 999999999988
Q ss_pred eeeEEEcCc-------CccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEE
Q 001343 575 TIKRTYAGF-------RKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 575 ~~~~~~~~~-------~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 646 (1096)
+....+.-+ ....|+.+.|.|.. ..+++.+.|..|+|||.++..++..+.+......-....|+.||++|++
T Consensus 484 k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs 563 (712)
T KOG0283|consen 484 KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVS 563 (712)
T ss_pred eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEE
Confidence 776654321 11268889988744 4688899999999999999999998887766556677899999999999
Q ss_pred EECCCcEEEEEcCCC
Q 001343 647 TTADNGFKILANAIG 661 (1096)
Q Consensus 647 ~~~dg~i~iwd~~~~ 661 (1096)
++.|..|++|+....
T Consensus 564 ~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 564 ASEDSWVYIWKNDSF 578 (712)
T ss_pred eecCceEEEEeCCCC
Confidence 999999999998554
No 83
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.2e-27 Score=221.92 Aligned_cols=283 Identities=18% Similarity=0.248 Sum_probs=228.2
Q ss_pred EEEEEcCCCCcEEEEEe-------CCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC-CC
Q 001343 348 ISMDFHPSHQTLLLVGS-------SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GN 419 (1096)
Q Consensus 348 ~~v~fsp~g~~llasg~-------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~ 419 (1096)
.++.|||--...||++. ..|.+.|-++..++.+.. +. -..-.+.+..++|+++ .+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~---------------s~d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQ---------------SYDTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EE---------------eeecccceeEeeecCCCcc
Confidence 57888985332344432 368999999875544432 11 1124568999999996 56
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeE
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~ 498 (1096)
.+++++.||++++||... .-..+..++.|...|.++.|++-.++ .++++|.|++|++|+ ..++.+.++.||..-|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~--~s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTM--PSKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCC--CCcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 788899999999999543 23344468899999999999997776 678889999999999 88999999999999999
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCC-CEEEEEeeccCCCCeEEEEeCCCC-ee
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEG-TI 576 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~~~~~~~~i~iwd~~~~-~~ 576 (1096)
...|+|. ..+.+++++.||++++||++.......+..|..+|.++.|+.-. +.+++++. |+.|+.||+++. .+
T Consensus 152 ~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhcccc
Confidence 9999987 45799999999999999999888888899999999999999855 45666665 999999999875 46
Q ss_pred eEEEcCcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCCC-eEEEEeecCCCCCCccEEEEeC-CCCEEEEEECCCcE
Q 001343 577 KRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGF 653 (1096)
Q Consensus 577 ~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i 653 (1096)
+..+.+|.- .|..+.|+|.. ..|++++.|-+++|||...+ ..+.+...|.. -|..+.|++ ++.++|+++.|+.+
T Consensus 227 l~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 227 LFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred ceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeecccccce
Confidence 777888876 89999999965 67888999999999999854 45555555544 788999998 77899999999999
Q ss_pred EEEEc
Q 001343 654 KILAN 658 (1096)
Q Consensus 654 ~iwd~ 658 (1096)
.||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99984
No 84
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.4e-26 Score=219.43 Aligned_cols=281 Identities=15% Similarity=0.235 Sum_probs=232.7
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
..+.|+++.|+++|. ++++++.|.+++|||..+|+.+.+ +..++-.|..+.|......++
T Consensus 13 ~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEE
Confidence 467899999999999 577888999999999999998864 555677899999988888777
Q ss_pred EEEC--CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEE
Q 001343 423 VAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1096)
Q Consensus 423 s~~~--dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~ 499 (1096)
.++. |.+|+..++.+.+.++ -+.||...|+.++.+|-+. .+++++.|++|++|| ...++...+.....+|
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi-- 145 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI-- 145 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc--
Confidence 7776 7899999999998888 6899999999999999998 899999999999999 7677776665444444
Q ss_pred EEeeecCCCcEEEEEECCCeEEEEEcCCCC--eeeEEeC---CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDA---PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~---~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
++|.| .|-+++++...+.|++||++... +-..+.. ...+.+.+.|||||++++.+.. .+.+++.|.-+|
T Consensus 146 ~AfDp--~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G 219 (311)
T KOG1446|consen 146 AAFDP--EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG 219 (311)
T ss_pred eeECC--CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC
Confidence 45644 66788888877799999998652 2223333 3458899999999999999886 889999999999
Q ss_pred eeeEEEcCcCccc--eEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCc
Q 001343 575 TIKRTYAGFRKKS--NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1096)
Q Consensus 575 ~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 652 (1096)
..+.++.++.... ....+|.|+++++++|+.||+|.+|+++++..+..+.+. +...+.++.|+|.-.++++++ ..
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--s~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--SN 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--ce
Confidence 9999998876532 245789999999999999999999999999999999885 234889999999877777665 47
Q ss_pred EEEEEcC
Q 001343 653 FKILANA 659 (1096)
Q Consensus 653 i~iwd~~ 659 (1096)
+.+|-..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 8888654
No 85
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=8.1e-27 Score=223.85 Aligned_cols=253 Identities=19% Similarity=0.258 Sum_probs=199.2
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccC------------CCc---cccceeecccccCEEEEEEecCCCc
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG------------SND---LRQHSQIDAHVGAVNDLAFAYPNKL 465 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~------------~~~---~~~~~~l~~h~~~v~~l~~s~d~~~ 465 (1096)
.+..|++++.+.+|||||.++|+|+.|..|+|.|++. |.. --.++++..|...|+++.|+|...
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~- 185 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET- 185 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh-
Confidence 3677999999999999999999999999999999871 111 012346778999999999999999
Q ss_pred EEEEEEeCCCcEEEEE-cCCceEEEe--eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE---eCCCC
Q 001343 466 LCVVTCGDDKLIKVWE-LSGRKLFNF--EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPGH 539 (1096)
Q Consensus 466 ~~l~s~s~d~~i~iwd-~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~ 539 (1096)
.|++|+.|++|+++| ......+.+ -....+|.++.|+|+ |.+|++|....++++||+++.++-..- ..|..
T Consensus 186 -ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs--GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 186 -ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS--GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred -eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC--CceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 999999999999999 333222222 224568999999995 579999999999999999998887644 34566
Q ss_pred cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEc-CcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe
Q 001343 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA-GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1096)
.|+++.+++.|+..++++. ||.|++||--+++++.++. .|.+..|++..|..+++++++.+.|..+++|.+.++.
T Consensus 263 ai~~V~Ys~t~~lYvTaSk----DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASK----DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred ceeEEEecCCccEEEEecc----CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 8999999999999999998 9999999999999999885 4566688999999999999999999999999999999
Q ss_pred EEEEeecCCCCCC---ccEEEEeCCCCEEEEEE-CCCcEEEEEcCCC
Q 001343 619 ILTSTDAEGGLPN---LPRLRFSKEGNLLAVTT-ADNGFKILANAIG 661 (1096)
Q Consensus 619 ~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 661 (1096)
.+..+.+-+..+. -+...|+....+++.-. ..+.+.-||..+.
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 9998876533211 12334444444443322 2345555665444
No 86
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.8e-27 Score=246.71 Aligned_cols=292 Identities=21% Similarity=0.283 Sum_probs=239.7
Q ss_pred CCCceE---EEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC
Q 001343 343 QGSTVI---SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1096)
Q Consensus 343 h~~~V~---~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~ 419 (1096)
|...|. .+..++.+.++|.||+.||.|++|++.......+ .++. ..+..|.++|+.++...+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~~~-asme~HsDWVNDiiL~~~~~ 86 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TPYI-ASMEHHSDWVNDIILCGNGK 86 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------------cchh-hhhhhhHhHHhhHHhhcCCC
Confidence 444555 5566665555899999999999999876443211 1111 23777999999999999999
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEE-ecCCCcEEEEEEeCCCcEEEEE-cCC--ceEE-------
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF-AYPNKLLCVVTCGDDKLIKVWE-LSG--RKLF------- 488 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~-s~d~~~~~l~s~s~d~~i~iwd-~~~--~~~~------- 488 (1096)
.|++++.|-+|++|+...+. .....++..|.+.|.|+++ .++.. ++|+||-|+.|.+|| ..| +.+.
T Consensus 87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 99999999999999998774 2222367789999999999 66776 899999999999999 655 2222
Q ss_pred -Eee-CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeE
Q 001343 489 -NFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1096)
Q Consensus 489 -~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i 566 (1096)
.+. |+..+|++++.++ +|..|++|+.++.+++||.++.+.+..+.+|...|..+..+.||+.+++++. |++|
T Consensus 164 ~sl~sG~k~siYSLA~N~--t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtI 237 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTI 237 (735)
T ss_pred ccCCCCCccceeeeecCC--cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceE
Confidence 233 8889999999866 5679999999999999999999999999999999999999999999999997 9999
Q ss_pred EEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEE
Q 001343 567 VEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 567 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 646 (1096)
++||+...+++.++..|.. .+.++..+|+-..+++|+.||.|+.=|+++......+-...+ +|..+..+...+-+-+
T Consensus 238 rlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~da--Pv~~l~~~~~~~~~Wv 314 (735)
T KOG0308|consen 238 RLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDA--PVLKLHLHEHDNSVWV 314 (735)
T ss_pred EeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCC--chhhhhhccccCCcee
Confidence 9999999999999999998 699999999999999999999999999998544333333333 6788888765555577
Q ss_pred EECCCcEEEEEcC
Q 001343 647 TTADNGFKILANA 659 (1096)
Q Consensus 647 ~~~dg~i~iwd~~ 659 (1096)
++.|+.|+-|...
T Consensus 315 tTtds~I~rW~~~ 327 (735)
T KOG0308|consen 315 TTTDSSIKRWKLE 327 (735)
T ss_pred eeccccceecCCc
Confidence 8889999999764
No 87
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.6e-26 Score=245.12 Aligned_cols=269 Identities=17% Similarity=0.291 Sum_probs=230.0
Q ss_pred ceeecCCCce-eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCc
Q 001343 317 EVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSL 395 (1096)
Q Consensus 317 ~v~~~~~~~~-~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 395 (1096)
.++...+... +|+..+..-..+..++ .+.|+++.|+++|+ +||+|..+|.|.|||..+.+.+..
T Consensus 190 ~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~------------- 254 (484)
T KOG0305|consen 190 VLAVALGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRT------------- 254 (484)
T ss_pred eEEEEecceEEEEecCCCceEEeEecC-CCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccc-------------
Confidence 3444433333 8888776644444455 89999999999999 699999999999999988776653
Q ss_pred ccccccccc-CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC
Q 001343 396 PFQASIFKD-VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1096)
Q Consensus 396 ~~~~~~~~~-h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d 474 (1096)
+.+ |...|-+++|. +..+.+|+.|+.|..+|+...+.... .+.+|...|..+.|++|+. ++++|+.|
T Consensus 255 ------~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnD 322 (484)
T KOG0305|consen 255 ------LRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGND 322 (484)
T ss_pred ------ccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCc
Confidence 555 99999999998 77899999999999999998776554 3889999999999999999 89999999
Q ss_pred CcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEE--ECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCC
Q 001343 475 KLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST--AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1096)
Q Consensus 475 ~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 551 (1096)
+.+.||| ....++..+..|.+.|.+++|+|-.. .+|++| +.|++|++||..++..+... ..+..|.++.|++..+
T Consensus 323 N~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~v-dtgsQVcsL~Wsk~~k 400 (484)
T KOG0305|consen 323 NVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSV-DTGSQVCSLIWSKKYK 400 (484)
T ss_pred cceEeccCCCccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEeccc-ccCCceeeEEEcCCCC
Confidence 9999999 78889999999999999999999765 588887 46999999999977666554 3456899999999998
Q ss_pred EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC
Q 001343 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1096)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1096)
.++++.. ..++.|.||+..+.+.+..+.+|.. .|..++++|+|..+++|+.|.++++|++-..
T Consensus 401 Ei~sthG--~s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 401 ELLSTHG--YSENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEEecC--CCCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 8887643 3477999999999999999999998 7889999999999999999999999998764
No 88
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=7.1e-26 Score=212.85 Aligned_cols=249 Identities=16% Similarity=0.192 Sum_probs=211.7
Q ss_pred cccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
+-+.+|...|.+++|+.+|..|++|+.|+++++|+++..+.... ....+|.+.|-.++|.|.... .+++++.|++|++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~-~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~ 91 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE-LVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRI 91 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh-hcccCCCcchhhheeCCCCCc-ceEEecCCceEEE
Confidence 34778999999999999999999999999999999998744433 256799999999999998776 8999999999999
Q ss_pred EE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
|| ..++++.......+.+. +.|+| +|.++++++.|..|.+.|.++.+....... ...+..++|+.++.+++....
T Consensus 92 wd~r~~k~~~~i~~~~eni~-i~wsp--~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENIN-ITWSP--DGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred EEeccCcEEEEeeccCcceE-EEEcC--CCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEecC
Confidence 99 99999988876555554 45655 678999999999999999987766554332 235778888877776665543
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
.|.|.|.....-+++..++.|.. ...|+.|+|+|++|++|+.|..+-+||++.--+++.+.-..- +|..+.|+
T Consensus 168 ----lG~v~ILsypsLkpv~si~AH~s-nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS 240 (313)
T KOG1407|consen 168 ----LGCVEILSYPSLKPVQSIKAHPS-NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVRTLSFS 240 (313)
T ss_pred ----CceEEEEeccccccccccccCCc-ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC--ceEEEEec
Confidence 79999999999999999999987 677899999999999999999999999998888888877665 89999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCC
Q 001343 639 KEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
-+|++||+++.|..|-|=++.+|
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred cCcceeeccCccceEEeEecccC
Confidence 99999999999998888777666
No 89
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.4e-26 Score=243.83 Aligned_cols=277 Identities=15% Similarity=0.224 Sum_probs=236.9
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECC
Q 001343 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1096)
Q Consensus 348 ~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d 427 (1096)
.-++|+..+ .||+| ....|.+|+..+++...- ..-+...|+++.|+++|.+||+|..+
T Consensus 181 nlldWss~n--~laVa-lg~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVA-LGQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred hHhhcccCC--eEEEE-ecceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecC
Confidence 446788554 58876 567999999999885432 22247899999999999999999999
Q ss_pred CeEEEEEccCCCccccceeecc-cccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEE-EeeCCCCCeEEEEeee
Q 001343 428 HLIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF-NFEGHEAPVYSICPHH 504 (1096)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~l~~-h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~-~~~~~~~~v~~~~~~~ 504 (1096)
|.|.|||..+.+.++ .+.+ |...|-+++|. +. .+.+|+.|+.|..+| ...+... .+.+|...|..+.|++
T Consensus 239 g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 239 GTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP 311 (484)
T ss_pred CeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence 999999999887776 4666 99999999998 34 799999999999999 5555444 4899999999999977
Q ss_pred cCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCC-CEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc
Q 001343 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1096)
Q Consensus 505 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 583 (1096)
++.++++|+.|+.+.|||.........+..|...|.+++|+|-. ..||+|+. ..|+.|++||..+++.+..+...
T Consensus 312 --d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdtg 387 (484)
T KOG0305|consen 312 --DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDTG 387 (484)
T ss_pred --CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEecccccC
Confidence 67899999999999999998889999999999999999999954 56666654 34899999999999999888764
Q ss_pred CccceEEEEEeCCCCEEEEE--EcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 584 RKKSNGVVQFDTTQNHFLAV--GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 584 ~~~~i~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
. .|+.+.|++..+.|+++ ..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+.
T Consensus 388 s--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 388 S--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred C--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 4 69999999998777774 4677999999999999999988876 8999999999999999999999999998664
No 90
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=9.2e-26 Score=229.21 Aligned_cols=293 Identities=16% Similarity=0.225 Sum_probs=233.9
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecc----cccCccccccccccCCCCEEEEEEcCC
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDM----AACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
.|.-+|+||+++|+++ +..+++.+|+|.=|++.+|+.... +|.- .....+.+..- ++|...|.+++.|+|
T Consensus 140 ~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~D 213 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSD 213 (479)
T ss_pred cccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcCC
Confidence 4889999999999999 589999999999999999985421 1111 11122222222 489999999999999
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCC
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~ 496 (1096)
|+|||+|+.|..|.||+.++.+.++ .+.+|.+.|.+++|-.... .+++++.|++|++|+ .....+.++.||++.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd~ 288 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQDG 288 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence 9999999999999999999988777 5889999999999987666 799999999999999 777888899999999
Q ss_pred eEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee
Q 001343 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1096)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~ 576 (1096)
|.++.... -...+-+|+.|+++++|++ ..+....+.++.+.+-|++|-.+ ..+++|+. +|.|.+|++.+.++
T Consensus 289 v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSd----nG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 289 VLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSD----NGSIALWSLLKKKP 360 (479)
T ss_pred eeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccC----CceEEEeeecccCc
Confidence 99998754 3356666779999999999 45556677788888999999654 56778876 99999999999988
Q ss_pred eEEEcCcCc-----------cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC----eEEEEeecCCCCCCccEEEEeCCC
Q 001343 577 KRTYAGFRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGGLPNLPRLRFSKEG 641 (1096)
Q Consensus 577 ~~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1096)
+.+....++ .-|++++..|..+++++|+.+|.|++|-+..+ .++..+.. .+.|++++|+++|
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLAFSNSG 437 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEEEccCC
Confidence 877653221 15678899999999999999999999999877 34444443 3479999999999
Q ss_pred CEEEEE-ECCCcEEEE
Q 001343 642 NLLAVT-TADNGFKIL 656 (1096)
Q Consensus 642 ~~l~~~-~~dg~i~iw 656 (1096)
+.+++| +....+--|
T Consensus 438 k~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 438 KRIVAGIGKEHRLGRW 453 (479)
T ss_pred CEEEEeccccccccee
Confidence 955555 444444444
No 91
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.6e-25 Score=225.22 Aligned_cols=283 Identities=17% Similarity=0.203 Sum_probs=247.1
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 424 (1096)
..|+++...|... .+.+|+.|..+.++|...++.+.. +.||...|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 4688888888855 689999999999999998887753 99999999999999999999999
Q ss_pred ECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeC--CCCCeEEEE
Q 001343 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG--HEAPVYSIC 501 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~--~~~~v~~~~ 501 (1096)
+.|..|+||......... ....|.++|+.+..+|.|. +|++++.|++..+.| .+|..+..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998766544 4668999999999999999 899999999999999 88888766553 234588999
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEc
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1096)
||| ||.++.+|..||.++|||+........+.+|.++|.+++|+.+|-+|++++. |+.|++||++..+..+++.
T Consensus 355 fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 988 7789999999999999999999999999999999999999999999999987 8889999999999888888
Q ss_pred CcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 582 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
......+..+.|.+.|.+++.++.|=+|++++-.+.+.......+.+.+..+++.|....+++++++.|..++++.+
T Consensus 429 l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 77766799999999999999998887888887666554444444444457899999999999999999999888754
No 92
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=7.5e-26 Score=240.91 Aligned_cols=283 Identities=16% Similarity=0.304 Sum_probs=240.2
Q ss_pred ceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEE-EE
Q 001343 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR-VA 413 (1096)
Q Consensus 336 ~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~ 413 (1096)
++.+.++ |...|..+++.+.. .+++||.||++++|+-..++.+.. +.+.+|.+.|.+ ++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSIC 65 (745)
T ss_pred eeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeeccce
Confidence 3455665 99999999999887 488999999999999766655432 347778888888 88
Q ss_pred EcC-CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeC
Q 001343 414 WSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG 492 (1096)
Q Consensus 414 ~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 492 (1096)
+-+ ++-.|++|+.|++|.+|...+...+. .+.+|...|.++....++. ++|||.|.++++| ..+++...+.+
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW-~~~~l~~~l~g 138 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVW-RIGELVYSLQG 138 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEe-cchhhhcccCC
Confidence 886 55569999999999999999988777 6899999999999887774 8999999999999 45667777999
Q ss_pred CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC
Q 001343 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~ 572 (1096)
|+..|+++...|.. .++||+.|.+|++|. .+.....+.+|...|..+++-+++. +++|+. ||.|+.|++
T Consensus 139 H~asVWAv~~l~e~---~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~-flScsN----Dg~Ir~w~~- 207 (745)
T KOG0301|consen 139 HTASVWAVASLPEN---TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSH-FLSCSN----DGSIRLWDL- 207 (745)
T ss_pred cchheeeeeecCCC---cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCC-eEeecC----CceEEEEec-
Confidence 99999999987642 899999999999994 4677888999999999999988765 556665 999999999
Q ss_pred CCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCc
Q 001343 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1096)
Q Consensus 573 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 652 (1096)
+|+.+.++.+|.. .+.++....++..++++++|++++||+.. ++.+.+..+.. .|+++.+-++|. +++|++||.
T Consensus 208 ~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SDG~ 281 (745)
T KOG0301|consen 208 DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSDGR 281 (745)
T ss_pred cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccCce
Confidence 8999999999998 88889988888999999999999999987 77888877765 789999888876 568889999
Q ss_pred EEEEEcCCC
Q 001343 653 FKILANAIG 661 (1096)
Q Consensus 653 i~iwd~~~~ 661 (1096)
|+||.....
T Consensus 282 VrVfT~~k~ 290 (745)
T KOG0301|consen 282 VRVFTVDKD 290 (745)
T ss_pred EEEEEeccc
Confidence 999987643
No 93
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.1e-25 Score=231.00 Aligned_cols=301 Identities=16% Similarity=0.241 Sum_probs=231.3
Q ss_pred eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC----eeeEEEcCcCccceEEEEEeCCCCEEEEEEcC
Q 001343 531 RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG----TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1096)
Q Consensus 531 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 606 (1096)
...+..+...|.++++.|.|..+++|+. |..|++||+... +..+.+.......+.++.|++.|..|++.+..
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~----Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSL----DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccc----cceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence 3455667778999999999999999998 999999998753 23344444445589999999999999999999
Q ss_pred CeEEEEeCCCCeEEEEeec----------CCCCCCccEEEEeCC-CCEEEEEECCCcEEEEEcCCCccccccccCCCccc
Q 001343 607 SQIKFWDMDNVNILTSTDA----------EGGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEA 675 (1096)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~----------~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 675 (1096)
...+++|.+..+......+ .+|...+++.+|+|. ...+++++.||+++||++.+....++.+.......
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 9999999887766655443 245568899999995 47889999999999999988766566665555555
Q ss_pred ccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEE
Q 001343 676 LRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLV 755 (1096)
Q Consensus 676 ~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 755 (1096)
.+.+++.++|++| ++++|+|..||.|.+|+..........
T Consensus 316 ~Rv~~tsC~~nrd-------------------------------------g~~iAagc~DGSIQ~W~~~~~~v~p~~--- 355 (641)
T KOG0772|consen 316 KRVPVTSCAWNRD-------------------------------------GKLIAAGCLDGSIQIWDKGSRTVRPVM--- 355 (641)
T ss_pred cccCceeeecCCC-------------------------------------cchhhhcccCCceeeeecCCcccccce---
Confidence 5666777776655 455688889999999997421111111
Q ss_pred EcCCCCCCcc--cEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCC
Q 001343 756 TMPESTDTSS--KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEA 833 (1096)
Q Consensus 756 ~~~~~~~~~~--~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~ 833 (1096)
.... .|.. .|+|+.||+||++|++-+.|+++++|++..-. +++. ...|......
T Consensus 356 ~vk~--AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k---------------------kpL~-~~tgL~t~~~ 411 (641)
T KOG0772|consen 356 KVKD--AHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK---------------------KPLN-VRTGLPTPFP 411 (641)
T ss_pred Eeee--ccCCCCceeEEEeccccchhhhccCCCceeeeeccccc---------------------cchh-hhcCCCccCC
Confidence 1111 1555 89999999999999999999999999985422 1111 1111113456
Q ss_pred eeeeeecCCCcEEEEecC-------CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEE
Q 001343 834 VPCIALSKNDSYVMSATG-------GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIY 900 (1096)
Q Consensus 834 v~~l~~s~dg~~la~~~d-------g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw 900 (1096)
-+.++|||+.++|++|.. |++.+||..+...+..+.-....|..+.|+| .-+.|+.|+.||++++|
T Consensus 412 ~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp-kLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 412 GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP-KLNQIFAGSGDGTAHVY 484 (641)
T ss_pred CCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc-hhhheeeecCCCceEEE
Confidence 678999999999999861 5699999999999999888888999999999 88899999999999987
No 94
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.6e-24 Score=243.74 Aligned_cols=255 Identities=11% Similarity=0.129 Sum_probs=194.7
Q ss_pred EeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC-CCEEEEEECCCeEEEEEccCCCc-
Q 001343 363 GSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSND- 440 (1096)
Q Consensus 363 g~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~~l~s~~~dg~i~vwd~~~~~~- 440 (1096)
|+.++.|++|+..+...+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 4556777888766543332 37899999999999996 78999999999999999986432
Q ss_pred c----ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEE
Q 001343 441 L----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (1096)
Q Consensus 441 ~----~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 515 (1096)
. .....+.+|...|.+++|+|++.. +|++++.|++|++|| .+++.+..+. |...|.+++|++ +|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence 1 122357789999999999999874 568999999999999 7788777776 667899999977 678999999
Q ss_pred CCCeEEEEEcCCCCeeeEEeCCCCcEEE-----EEEcCCCCEEEEEeeccCCCCeEEEEeCCC-CeeeEEEcCcCcc-ce
Q 001343 516 IDGKIKAWLYDTMGSRVDYDAPGHWCTT-----MLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKK-SN 588 (1096)
Q Consensus 516 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~-----l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~-~i 588 (1096)
.|+.|++||++++.....+..|.+.+.+ ..|++++.++++++.++..++.|++||+++ ++++..+..+... .+
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 9999999999999888888888765432 345689999999887544456899999985 5666655443322 22
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCC
Q 001343 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1096)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1096)
......+++.++++|+.|+.|++|++..+. +..+....+..++.+++|.|..
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 223334457888999999999999998764 3334433344578899999964
No 95
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=9.5e-25 Score=245.43 Aligned_cols=248 Identities=16% Similarity=0.223 Sum_probs=199.5
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcc----------ccceeecccccCEEEEEEec-CCCcEEEEEEeCC
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL----------RQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDD 474 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~----------~~~~~l~~h~~~v~~l~~s~-d~~~~~l~s~s~d 474 (1096)
-..|.....++|+..+++++.+.....|+...+..+ .....+.+|.+.|++++|+| ++. +|++|+.|
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~D 97 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASED 97 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeCC
Confidence 345666667778777777777777777775544221 11224779999999999999 777 89999999
Q ss_pred CcEEEEE-cCC-------ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEE
Q 001343 475 KLIKVWE-LSG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLY 546 (1096)
Q Consensus 475 ~~i~iwd-~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~ 546 (1096)
++|++|| .++ .++..+.+|...|.+++|+|.. +.+|++++.|++|++||++++.....+..|...|.+++|
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~ 176 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEW 176 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEE
Confidence 9999999 443 3567889999999999998853 368999999999999999999888888889999999999
Q ss_pred cCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE----cCCeEEEEeCCCCe-EEE
Q 001343 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVN-ILT 621 (1096)
Q Consensus 547 s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~-~~~ 621 (1096)
+|+|.+|++++. |+.|++||+++++.+..+.+|.......+.|.+++..+++++ .|+.|++||+++.. .+.
T Consensus 177 spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 177 NLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred ECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 999999999987 999999999999999999988765556678888888887765 47899999998754 333
Q ss_pred EeecCCCCCCccEEEEeCCCCEEEEEE-CCCcEEEEEcCCC
Q 001343 622 STDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIG 661 (1096)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 661 (1096)
....+. ...+....|++++++|++++ .|+.|++||+.++
T Consensus 253 ~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 253 TVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 333322 22456678899999999888 4999999999887
No 96
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.1e-24 Score=208.09 Aligned_cols=274 Identities=14% Similarity=0.203 Sum_probs=222.2
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC--CCcEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--DKLIK 478 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~--d~~i~ 478 (1096)
.+..-.+.|+++.|+++|.+|++++.|.++++||..+++..+ ++..++-.|..++|..... .++.++. |.+|+
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIR 83 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceE
Confidence 466678899999999999999999999999999999998887 5667888899999988887 5666665 89999
Q ss_pred EEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEe
Q 001343 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 479 iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
.-+ .+.+.++.|.||...|++++.+|.+ +.+++++.|++|++||++...+...+.....+ .++|.|.|-.+|++.
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALAN 159 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEec
Confidence 999 8999999999999999999998865 68999999999999999988777766555544 478999999999887
Q ss_pred eccCCCCeEEEEeCCCC--eeeEEEcCc--CccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCc-
Q 001343 558 TSKDGDSFLVEWNESEG--TIKRTYAGF--RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL- 632 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~--~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v- 632 (1096)
. ...|++||++.. .+-.++.-. .......+.|+|+|++++.++..+.+++.|.-+|..+.++..+.....+
T Consensus 160 ~----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~ 235 (311)
T KOG1446|consen 160 G----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP 235 (311)
T ss_pred C----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc
Confidence 5 559999999853 333343322 2236788999999999999999999999999999999998877654322
Q ss_pred cEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeE
Q 001343 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
....|.||++++++|+.||+|.+|+++++. ....+.+. ..+++.++.|+|.-...
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~-~v~~~~~~----~~~~~~~~~fnP~~~mf 290 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGTIHVWNLETGK-KVAVLRGP----NGGPVSCVRFNPRYAMF 290 (311)
T ss_pred eeEEECCCCcEEEEecCCCcEEEEEcCCCc-EeeEecCC----CCCCccccccCCceeee
Confidence 467899999999999999999999999984 44444443 22345556666654443
No 97
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2e-25 Score=226.86 Aligned_cols=281 Identities=20% Similarity=0.232 Sum_probs=235.3
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccce-------------ee--cccccCEEEEEEecCCCcE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS-------------QI--DAHVGAVNDLAFAYPNKLL 466 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------------~l--~~h~~~v~~l~~s~d~~~~ 466 (1096)
+..|.-+|.|++++||++++++++.+++|.=|++.+|+..+.+. .. .+|...|.+++.++||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 56689999999999999999999999999999999887431110 01 37889999999999999
Q ss_pred EEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEE
Q 001343 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 545 (1096)
+|++|+.|..|.||+ .+.+.++.+.+|.+.|.+++|-.. ...+++++.|++|++|+++....+.++-+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g--t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG--TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecC--ccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 999999999999999 999999999999999999999653 36799999999999999999888889999999999999
Q ss_pred EcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeec
Q 001343 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1096)
...-++.+.+++. |.++++|++. ....-.|.++.+ .+.|++|-. ..++++|+.+|.|.+|++.+.+++.+...
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~-eesqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIP-EESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccc----cceeEEEecc-ccceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 9888888888877 9999999994 334445666655 788888865 47899999999999999999888876543
Q ss_pred CCC----------CCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEec
Q 001343 626 EGG----------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1096)
Q Consensus 626 ~~~----------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~ 695 (1096)
..+ ...|++++..|...++++|+.+|.|++|.+.++.+.+..+...+ ..+.|++++|+++|+.++++
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc---cccEEEEEEEccCCCEEEEe
Confidence 211 12688999999999999999999999999999865555444433 45679999999999977555
Q ss_pred C
Q 001343 696 G 696 (1096)
Q Consensus 696 ~ 696 (1096)
.
T Consensus 444 i 444 (479)
T KOG0299|consen 444 I 444 (479)
T ss_pred c
Confidence 3
No 98
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.6e-26 Score=239.86 Aligned_cols=241 Identities=17% Similarity=0.239 Sum_probs=207.3
Q ss_pred EEEEc-CCCCEEEEEECCCeEEEEEccCCCcc---ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC-
Q 001343 411 RVAWS-PDGNYVGVAFTKHLIQLYSYAGSNDL---RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG- 484 (1096)
Q Consensus 411 ~l~~s-pd~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~- 484 (1096)
.+..+ |.++||.+||.||.|++|++..-... .....+..|...|+.+....+++ .|+++|.|-+|++|+ ..+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 44444 36788999999999999998643321 12335788999999999999999 799999999999999 555
Q ss_pred -ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe--ee--------EEe-CCCCcEEEEEEcCCCCE
Q 001343 485 -RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RV--------DYD-APGHWCTTMLYSADGSR 552 (1096)
Q Consensus 485 -~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~--------~~~-~~~~~i~~l~~s~~~~~ 552 (1096)
-++.++..|...|.|+++. ..+...+++||.|+.|.+||++++.. .. .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 6788899999999999983 23557999999999999999997633 11 122 55568999999999999
Q ss_pred EEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCc
Q 001343 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1096)
+++|+. ++.|++||.++++.+..+.||.. .|.++..+++|..+++++.||+|++||+...+++.++..|.. .|
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~V 258 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GV 258 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ce
Confidence 999987 99999999999999999999998 899999999999999999999999999999999999988876 79
Q ss_pred cEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 633 PRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+++..+|+-..+++|+.||.|..=|+.+.
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999998887664
No 99
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.4e-25 Score=209.92 Aligned_cols=250 Identities=14% Similarity=0.266 Sum_probs=207.8
Q ss_pred ceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 336 ~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
.....+.-.+.+..|+|+++....+++++.||+++|||+..... +.+.++.|...|.++.|+
T Consensus 52 ~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn 113 (311)
T KOG0277|consen 52 QECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWN 113 (311)
T ss_pred EEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEeccc
Confidence 34455667889999999999887899999999999999543221 223488999999999999
Q ss_pred C-CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceEEEeeC
Q 001343 416 P-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEG 492 (1096)
Q Consensus 416 p-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~ 492 (1096)
+ +++.+++++-|++|++|+...++.+. ++.||...|....|+|.... +++++|.|+++++|| ..|+.+. +..
T Consensus 114 ~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~-i~a 188 (311)
T KOG0277|consen 114 TVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMS-IEA 188 (311)
T ss_pred cccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeE-EEe
Confidence 9 56677888999999999998877666 68999999999999998776 899999999999999 5566665 889
Q ss_pred CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe-eeEEeCCCCcEEEEEEcCCCC-EEEEEeeccCCCCeEEEEe
Q 001343 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWN 570 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~-~l~~~~~~~~~~~~i~iwd 570 (1096)
|...|.++.|+.. +...+++|+.|+.|++||++.... +..+.+|+-.|..+.|||... .|++++. |-++++||
T Consensus 189 h~~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~riw~ 263 (311)
T KOG0277|consen 189 HNSEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTVRIWD 263 (311)
T ss_pred ccceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceEEecc
Confidence 9999999999876 457999999999999999987554 557888888999999999764 5667776 99999999
Q ss_pred CCCCe-eeEEEcCcCccceEEEEEeC-CCCEEEEEEcCCeEEEEeC
Q 001343 571 ESEGT-IKRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 571 ~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~ 614 (1096)
...+. .+.+...|.. .+..+.|++ ++.++++++-|+.++||+.
T Consensus 264 ~~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 264 PERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 98554 4555555555 788888887 5678999999999999984
No 100
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=3.5e-26 Score=228.66 Aligned_cols=246 Identities=20% Similarity=0.277 Sum_probs=210.5
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|-.+.|+.+.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 67799999999999999999999999999999998876 233346888999999999999999 889999999999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
.+.+...++.||++.|+++.|.-.. ..+++|+.|.+|+.||+....+..+.- ....+..++.+ ...++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc--
Confidence 8889999999999999999986543 349999999999999999866655442 33345566655 445666665
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCC--CCCccEEEEe
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG--LPNLPRLRFS 638 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s 638 (1096)
|+.|++||.++.........+. .++++..++++..+++++.|.++.+.|+++.+....+...+. ....+.+.||
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred --ccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 8899999999999999988765 799999999999999999999999999999998888765431 2257889999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCC
Q 001343 639 KEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
|++.|+++|+.||.|+||++.++
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCc
Confidence 99999999999999999999877
No 101
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2e-26 Score=226.28 Aligned_cols=282 Identities=14% Similarity=0.202 Sum_probs=230.5
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
+|.+.|.|++=+|..-..+|+|+.||.|+|||+.+..+..+ +..|.+.|..|+++. ..+
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~--~~~ 122 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ--TSF 122 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc--cce
Confidence 59999999999999844799999999999999998877654 788999999999987 778
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEE
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~ 500 (1096)
++++.|.+|+.|.++.. ..+ ++. -...+..+.-+..+. .++|||. .|.||| ....++..+.--...|.++
T Consensus 123 ~tvgdDKtvK~wk~~~~-p~~---til-g~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~sv 193 (433)
T KOG0268|consen 123 FTVGDDKTVKQWKIDGP-PLH---TIL-GKSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSISSV 193 (433)
T ss_pred EEecCCcceeeeeccCC-cce---eee-ccccccccccccccc--cccccCc--eeeecccccCCccceeecCCCceeEE
Confidence 89999999999998863 333 232 244566777666666 7888885 488999 8888999988778889999
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC-eeeEE
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKRT 579 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~ 579 (1096)
.|+|... ..|++++.|+.|.+||++....+...... ..-+.++|+|.+-.++++.. |..++.+|++.. .++..
T Consensus 194 kfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~E----D~nlY~~DmR~l~~p~~v 267 (433)
T KOG0268|consen 194 KFNPVET-SILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANE----DHNLYTYDMRNLSRPLNV 267 (433)
T ss_pred ecCCCcc-hheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccc----cccceehhhhhhcccchh
Confidence 9998754 58888889999999999998887655432 24678999996666666665 999999999864 46677
Q ss_pred EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
+.+|.. .+..+.|+|.|.-|++|+.|.+|+||..+.+.....+.... ...|.++.|+-|.+++++|++|+.|++|...
T Consensus 268 ~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR-Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 268 HKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR-MQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred hcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh-hheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 778877 88899999999999999999999999998775544332221 2378999999999999999999999999875
Q ss_pred CC
Q 001343 660 IG 661 (1096)
Q Consensus 660 ~~ 661 (1096)
..
T Consensus 346 As 347 (433)
T KOG0268|consen 346 AS 347 (433)
T ss_pred hh
Confidence 54
No 102
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.9e-25 Score=214.90 Aligned_cols=295 Identities=13% Similarity=0.189 Sum_probs=241.7
Q ss_pred ceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE
Q 001343 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1096)
Q Consensus 336 ~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1096)
++++.+. |++.|+.|+...... ++.+++.|.+.+||.+++|.++.+ +.||.+.|++|.|
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKF 198 (481)
T ss_pred eehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEe
Confidence 4455555 999999999988777 899999999999999999999875 8899999999999
Q ss_pred cCCCCEEEEEECCCeEEEEEc------cC--------CC----------------------cc-ccceeecccccCEEEE
Q 001343 415 SPDGNYVGVAFTKHLIQLYSY------AG--------SN----------------------DL-RQHSQIDAHVGAVNDL 457 (1096)
Q Consensus 415 spd~~~l~s~~~dg~i~vwd~------~~--------~~----------------------~~-~~~~~l~~h~~~v~~l 457 (1096)
++.+.++++++.|++..||.. .. ++ .+ -.+..+.+|.+.|.++
T Consensus 199 h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 199 HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence 999999999999999999972 11 00 01 1223578999999999
Q ss_pred EEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC-CeeeEEe
Q 001343 458 AFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYD 535 (1096)
Q Consensus 458 ~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~ 535 (1096)
.|...|+ .+++++.|.+..+|| .+|..+..+.||....+.++-+|. ..++++.+.|.+.++||++.. ..+..+.
T Consensus 279 dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt--QrLVvTsSrDtTFRLWDFReaI~sV~VFQ 354 (481)
T KOG0300|consen 279 DWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT--QRLVVTSSRDTTFRLWDFREAIQSVAVFQ 354 (481)
T ss_pred hhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCc--ceEEEEeccCceeEeccchhhcceeeeec
Confidence 9999999 899999999999999 999999999999999999998884 478999999999999999843 3355889
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe-eeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 001343 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 536 ~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1096)
+|...|++..|..+. .+++++. |.+|++||+++.+ ++.++.... +++.++.+..+..|+.--++..|++||+
T Consensus 355 GHtdtVTS~vF~~dd-~vVSgSD----DrTvKvWdLrNMRsplATIRtdS--~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 355 GHTDTVTSVVFNTDD-RVVSGSD----DRTVKVWDLRNMRSPLATIRTDS--PANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred ccccceeEEEEecCC-ceeecCC----CceEEEeeeccccCcceeeecCC--ccceeEeecCCceEEeccCCceEEEEec
Confidence 999999999998765 5677775 9999999998764 556665533 6777888887778888888899999999
Q ss_pred CCCeEEEEe--ecCCCCCCccEEEEeCCC--CEEEEEECCCcEEEEEcCCC
Q 001343 615 DNVNILTST--DAEGGLPNLPRLRFSKEG--NLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 615 ~~~~~~~~~--~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~ 661 (1096)
....+.... .-.+|..-|.|++|..+- .-|++++.|..+.-|++...
T Consensus 428 nG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 428 NGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 765443322 223344478999998644 56789999999999998654
No 103
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=3.6e-25 Score=248.46 Aligned_cols=255 Identities=19% Similarity=0.357 Sum_probs=220.0
Q ss_pred eeecCCCCcceEEe--ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCcccccccccc
Q 001343 327 TWSLDDLPRTVAVS--LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~--l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
+|+... +..+.+ .+|.+.|++++|..-+. +|++|+.|.+++|||..+|++... +.+
T Consensus 232 ~~~~~~--~~~i~~~l~GH~g~V~~l~~~~~~~-~lvsgS~D~t~rvWd~~sg~C~~~-------------------l~g 289 (537)
T KOG0274|consen 232 LWDLNN--GYLILTRLVGHFGGVWGLAFPSGGD-KLVSGSTDKTERVWDCSTGECTHS-------------------LQG 289 (537)
T ss_pred Eeeccc--ceEEEeeccCCCCCceeEEEecCCC-EEEEEecCCcEEeEecCCCcEEEE-------------------ecC
Confidence 566554 444444 55999999999998555 799999999999999999999864 889
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cC
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~ 483 (1096)
|.+.|.++... +.++++|+.|.+|++|+++++.++. .+.+|.++|.++... +. ++++|+.|++|++|| .+
T Consensus 290 h~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~---l~~~h~~~V~~v~~~--~~--~lvsgs~d~~v~VW~~~~ 360 (537)
T KOG0274|consen 290 HTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLN---LLRGHTGPVNCVQLD--EP--LLVSGSYDGTVKVWDPRT 360 (537)
T ss_pred CCceEEEEEcc--CceEeeccCCceEEEEeccCcceEE---EeccccccEEEEEec--CC--EEEEEecCceEEEEEhhh
Confidence 99999999875 4578889999999999999998887 567799999999998 55 899999999999999 99
Q ss_pred CceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC-CeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCC
Q 001343 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
+++++++.+|...|+++.+.. . ..+++|+.|++|++||+++. ++...+..|..-+..+. ..+++|++++.
T Consensus 361 ~~cl~sl~gH~~~V~sl~~~~--~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~a---- 431 (537)
T KOG0274|consen 361 GKCLKSLSGHTGRVYSLIVDS--E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSA---- 431 (537)
T ss_pred ceeeeeecCCcceEEEEEecC--c-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccc----
Confidence 999999999999999997733 2 68999999999999999999 88889999988775555 45778999987
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1096)
|+.|++||..++++++++.+.+...+..+++. ...+++++.||.+++||+++++....+
T Consensus 432 D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 432 DGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 99999999999999999999532367777665 578999999999999999999888766
No 104
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.5e-26 Score=223.88 Aligned_cols=241 Identities=17% Similarity=0.257 Sum_probs=201.0
Q ss_pred cccCCCCEEEEEEcCCC-CEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 402 FKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
+.||...|.|++=+|.. ..+|+|+.||.|++||+....+++ ++.+|.+.|..+++.. . .+++++.|++|+.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~--~--~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ--T--SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc--c--ceEEecCCcceeee
Confidence 68899999999999986 889999999999999999987777 6889999999999987 3 68999999999999
Q ss_pred EcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 481 ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 481 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
...+.++.++.+. +.+..+.-+. .+..++++|. .|.|||.+...++..+.-....|.++.|+|....++.++.
T Consensus 135 k~~~~p~~tilg~-s~~~gIdh~~--~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~-- 207 (433)
T KOG0268|consen 135 KIDGPPLHTILGK-SVYLGIDHHR--KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA-- 207 (433)
T ss_pred eccCCcceeeecc-cccccccccc--ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec--
Confidence 9777788887653 3466666544 3356777775 5889999988888888888889999999998876665443
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC-eEEEEeecCCCCCCccEEEEeC
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSK 639 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~ 639 (1096)
.|+.|.+||++++.+++.+.-.. ..+.++|+|.+-.|++|++|..++.||++.- .++.....|.. .|.+++|+|
T Consensus 208 -sDrsIvLyD~R~~~Pl~KVi~~m--RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvs--AV~dVdfsp 282 (433)
T KOG0268|consen 208 -SDRSIVLYDLRQASPLKKVILTM--RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVS--AVMDVDFSP 282 (433)
T ss_pred -cCCceEEEecccCCccceeeeec--cccceecCccccceeeccccccceehhhhhhcccchhhcccce--eEEEeccCC
Confidence 29999999999999887765432 3456999998778889999999999999863 45666666654 899999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCC
Q 001343 640 EGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 640 ~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.|+-+++|+.|.+|+||....+
T Consensus 283 tG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred CcchhccccccceEEEeecCCC
Confidence 9999999999999999998665
No 105
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.5e-25 Score=225.55 Aligned_cols=248 Identities=16% Similarity=0.241 Sum_probs=207.0
Q ss_pred cceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEE
Q 001343 335 RTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1096)
Q Consensus 335 ~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1096)
....+++. .++.|.++.|-.||+ |||+|...|.|+|+|+.+...++ .+.+|+.+|..+.
T Consensus 58 ~~~~k~~srFk~~v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~r~iLR-------------------~~~ah~apv~~~~ 117 (487)
T KOG0310|consen 58 RSVRKTFSRFKDVVYSVDFRSDGR-LLAAGDESGHVKVFDMKSRVILR-------------------QLYAHQAPVHVTK 117 (487)
T ss_pred hhhhhhHHhhccceeEEEeecCCe-EEEccCCcCcEEEeccccHHHHH-------------------HHhhccCceeEEE
Confidence 33444444 788999999999999 89999999999999966533332 3888999999999
Q ss_pred EcCC-CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cC-CceEEEe
Q 001343 414 WSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS-GRKLFNF 490 (1096)
Q Consensus 414 ~spd-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~-~~~~~~~ 490 (1096)
|+|+ +..+++|+.|+.+++||+.++.. ...+.+|++.|.|.+|+|-... .++|||.||.|++|| .. +..+..+
T Consensus 118 f~~~d~t~l~s~sDd~v~k~~d~s~a~v---~~~l~~htDYVR~g~~~~~~~h-ivvtGsYDg~vrl~DtR~~~~~v~el 193 (487)
T KOG0310|consen 118 FSPQDNTMLVSGSDDKVVKYWDLSTAYV---QAELSGHTDYVRCGDISPANDH-IVVTGSYDGKVRLWDTRSLTSRVVEL 193 (487)
T ss_pred ecccCCeEEEecCCCceEEEEEcCCcEE---EEEecCCcceeEeeccccCCCe-EEEecCCCceEEEEEeccCCceeEEe
Confidence 9995 55677888899999999999764 3368899999999999997765 899999999999999 43 3667777
Q ss_pred eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeE-EeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEE
Q 001343 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1096)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iw 569 (1096)
. |..||-.+.+.| .|..|++++ ...+++||+-++..... ...|...|+|+.+..++..|++++- |+.+++|
T Consensus 194 n-hg~pVe~vl~lp--sgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL----D~~VKVf 265 (487)
T KOG0310|consen 194 N-HGCPVESVLALP--SGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL----DRHVKVF 265 (487)
T ss_pred c-CCCceeeEEEcC--CCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccc----ccceEEE
Confidence 6 999999999977 446777776 46899999997766654 4449999999999999999999998 9999999
Q ss_pred eCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 570 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
|+.+.+.+..+.-.. +|.+++.+|++..++.|..+|.+.+-+...
T Consensus 266 d~t~~Kvv~s~~~~~--pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 266 DTTNYKVVHSWKYPG--PVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred EccceEEEEeeeccc--ceeeEEecCCCceEEEecccceeeeehhhc
Confidence 999999988877643 788899999999999999999887774433
No 106
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.94 E-value=4.1e-24 Score=223.94 Aligned_cols=214 Identities=12% Similarity=0.147 Sum_probs=160.5
Q ss_pred ccccCCCCEEEEEEcC-CCCEEEEEECCCeEEEEEccCCCccc---cceeecccccCEEEEEEecCCCcEEEEEEeCCCc
Q 001343 401 IFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLR---QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~ 476 (1096)
++.+|...|+.+.|+| +..+||+|+.|..|+||.+..|-..+ .-..+.+..-.|.++.|+|.... |+..+.-|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg--il~s~a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG--ILASGAHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc--eEEeccCce
Confidence 4889999999999999 67789999999999999998442211 11123344557889999998774 444555899
Q ss_pred EEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe-eeEEeCCCC-cEEEEEEcCCCCEE
Q 001343 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGH-WCTTMLYSADGSRL 553 (1096)
Q Consensus 477 i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~-~i~~l~~s~~~~~l 553 (1096)
++||| .+++.+..+.+|...|.+..|+ .||.++++.+.|..|+|||.+.... +.....|.+ .-..+.|.-+-..|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~Ws--eDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWS--EDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhccccc--cCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 99999 8999999999999999999995 4889999999999999999986544 344455554 34567777666677
Q ss_pred EEEeeccCCCCeEEEEeCCCC-eeeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCe
Q 001343 554 FSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN 618 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 618 (1096)
++.+.+......+++||.+.. ..++++.......+..--|.||.++++.++ .+.+++.+.+...+
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~q 296 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQ 296 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCC
Confidence 777765555678999998763 445555444333455567889888766555 67888888887654
No 107
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.8e-24 Score=206.61 Aligned_cols=277 Identities=16% Similarity=0.179 Sum_probs=214.4
Q ss_pred ccCCCCEEEEEEcC-CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 403 KDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 403 ~~h~~~V~~l~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
....+.|.+|+||| ...+++.++.||+||+|+++....... +....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD 100 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence 34678999999999 556666889999999999987422222 24667999999999999998 899999999999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
.++ .+..+..|.++|..+.|-+..+-..|++|+.|.+|++||.+....+..+..+.. ++++..- ..+++++..
T Consensus 101 L~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~Dv~--~pm~vVata-- 174 (347)
T KOG0647|consen 101 LASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAADVL--YPMAVVATA-- 174 (347)
T ss_pred ccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehhcc--CceeEEEec--
Confidence 555 677888899999999998776667899999999999999998888877766543 5555443 235555554
Q ss_pred CCCCeEEEEeCCCCee-eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC--eEEEEeecCCC-------CC
Q 001343 561 DGDSFLVEWNESEGTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTSTDAEGG-------LP 630 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~-------~~ 630 (1096)
+..|.+|+++++.. .+.....-...+.+++...+....+.|+-+|.+.|..++.+ +.-.++..|.. .-
T Consensus 175 --~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 175 --ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred --CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence 88999999976543 33333334447888888888888899999999999999876 33333433331 23
Q ss_pred CccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecC
Q 001343 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (1096)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~ 696 (1096)
.|++++|+|.-..|++++.||++.+||-... ..++..+. ...+|++..|+.+|.++|-..
T Consensus 253 aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar-~kLk~s~~-----~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 253 AVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR-TKLKTSET-----HPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred EecceEeecccceEEEecCCceEEEecchhh-hhhhccCc-----CCCccceeEecCCCCEEEEEe
Confidence 5889999999999999999999999997655 33443333 355789999999999985543
No 108
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.8e-24 Score=243.81 Aligned_cols=228 Identities=16% Similarity=0.213 Sum_probs=193.3
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEE--CCCeEEEEEccCCC---------ccccceeecccccCEEEEEEecCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAF--TKHLIQLYSYAGSN---------DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVT 470 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~--~dg~i~vwd~~~~~---------~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s 470 (1096)
+..++..|.+++.+|||..+|+|+ .||.++||+.+.-- ..+.+.....|.+.|+|+.|+|||+ +||+
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~--~lAs 86 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS--YLAS 86 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC--eEee
Confidence 344567899999999999999999 89999999875211 1233345678999999999999999 8999
Q ss_pred EeCCCcEEEEE-cC-------C-----------ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCee
Q 001343 471 CGDDKLIKVWE-LS-------G-----------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR 531 (1096)
Q Consensus 471 ~s~d~~i~iwd-~~-------~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 531 (1096)
||+|+.|.||+ .. | ++...+.+|...|..++|+| ++.++++++.|++|.+|+..+.+..
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp--~~~~lvS~s~DnsViiwn~~tF~~~ 164 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP--DDSLLVSVSLDNSVIIWNAKTFELL 164 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC--CccEEEEecccceEEEEccccceee
Confidence 99999999999 42 1 25677899999999999987 7789999999999999999999889
Q ss_pred eEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc-----cceEEEEEeCCCCEEEEEE--
Q 001343 532 VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-----KSNGVVQFDTTQNHFLAVG-- 604 (1096)
Q Consensus 532 ~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~-- 604 (1096)
..+.+|...|..+.|.|-|+++++-+. |+.|++|++.+....+.+.++-+ ..+..+.|+|||.+|++..
T Consensus 165 ~vl~~H~s~VKGvs~DP~Gky~ASqsd----Drtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 165 KVLRGHQSLVKGVSWDPIGKYFASQSD----DRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred eeeecccccccceEECCccCeeeeecC----CceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 999999999999999999999999987 99999999888888888776544 2456689999999999853
Q ss_pred --cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC
Q 001343 605 --EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1096)
Q Consensus 605 --~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1096)
.-.++.|.+..+-+.-..+-+|.. ++.++.|+|
T Consensus 241 n~~~~~~~IieR~tWk~~~~LvGH~~--p~evvrFnP 275 (942)
T KOG0973|consen 241 NGGKSTIAIIERGTWKVDKDLVGHSA--PVEVVRFNP 275 (942)
T ss_pred cCCcceeEEEecCCceeeeeeecCCC--ceEEEEeCh
Confidence 345788998877777777777766 899999998
No 109
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.3e-24 Score=206.50 Aligned_cols=242 Identities=19% Similarity=0.247 Sum_probs=205.9
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+..|.++|++++.+ +.|+|+|+.|-+|+|||+.....+. .+-.|.+.|+++.|.++-....|++|+.||.|.+|+
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 67899999999985 8999999999999999999877666 566799999999999876433699999999999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
..-.++.++++|.+.|+.+++||++ ++-++.+.|+.+++||+-+++.-........ -..+.|+|.|.+++..+
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~--- 187 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG--- 187 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe---
Confidence 8889999999999999999999954 7899999999999999998887776655443 34499999999888876
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEE--e
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF--S 638 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--s 638 (1096)
...|-+|.+.+......+.... .+.++.|. ++..+++|++|+.|.+||.++..+...+..|.. +|.++.+ .
T Consensus 188 --~~~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~~~ 260 (362)
T KOG0294|consen 188 --RNKIDIYQLDNASVFREIENPK--RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASYTN 260 (362)
T ss_pred --ccEEEEEecccHhHhhhhhccc--cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEEEec
Confidence 6789999998887766665542 35545553 568999999999999999999888888888766 8998884 4
Q ss_pred CCCCEEEEEECCCcEEEEEcCCC
Q 001343 639 KEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
|++.+|+++++||.|++||+...
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CCceEEEEeccCceEEEEEcccc
Confidence 67899999999999999999765
No 110
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=5.4e-24 Score=205.87 Aligned_cols=267 Identities=17% Similarity=0.265 Sum_probs=215.1
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
.+.|..|.|+|.+.. |++++-||++++||+...+... .-.|+.++.+++|.+ ...+++
T Consensus 13 ~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred hhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEEE
Confidence 568999999999885 5556799999999998765432 234899999999987 567889
Q ss_pred EECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEe
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICP 502 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~ 502 (1096)
|+.||.|+.+|++++.... +..|.++|.|+.+++... .+++||.|++|++|| ........+. ....|.++..
T Consensus 71 G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred eccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence 9999999999999987654 778999999999998777 899999999999999 5544444444 3347888876
Q ss_pred eecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC--CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC----ee
Q 001343 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG----TI 576 (1096)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~----~~ 576 (1096)
.++.|++|+.|..+.+||+++.......... .-.+.++++-|++.-.++++. +|.+.+=.+... ..
T Consensus 144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhhh
Confidence 4578999999999999999987766533222 237899999998887887776 888876555544 33
Q ss_pred eEEEcCcCc--------cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEE
Q 001343 577 KRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1096)
Q Consensus 577 ~~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1096)
...|+.|.. .+|++++|+|-...|++|+.||.|.+||..+.+.+..+..... .|..++|+.+|..||+++
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~--SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYET--SISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCC--ceEEEEeccCCCeEEEEe
Confidence 445666543 2688899999999999999999999999999988888766533 799999999999999997
Q ss_pred C
Q 001343 649 A 649 (1096)
Q Consensus 649 ~ 649 (1096)
.
T Consensus 294 s 294 (323)
T KOG1036|consen 294 S 294 (323)
T ss_pred c
Confidence 5
No 111
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=3.3e-24 Score=215.74 Aligned_cols=238 Identities=16% Similarity=0.256 Sum_probs=213.5
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~ 485 (1096)
..+.++...|....+++|+.|..+.++|..+++.+. .+.||...|+.+.|+++.. .+++++.|..|+||. ....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 368888888888899999999999999999987776 6899999999999999998 899999999999999 6666
Q ss_pred eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC--CcEEEEEEcCCCCEEEEEeeccCCC
Q 001343 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~~~~l~~~~~~~~~~ 563 (1096)
.......|..+|+.+..+| .|.||++++.||+..+.|++++.......... -.+++.+|+|||..+.++.. +
T Consensus 295 ~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred Cccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 7777889999999999988 55799999999999999999998887766542 36899999999999999987 9
Q ss_pred CeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCE
Q 001343 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 643 (1096)
+.+++||+.++..+..|.+|.+ +|..+.|+.+|-+++++++|+.|++||++..+...++...... .+.++.|.+.|.+
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTY 446 (506)
T ss_pred ceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCe
Confidence 9999999999999999999988 9999999999999999999999999999998888888877654 7999999999999
Q ss_pred EEEEECCCcEEEEE
Q 001343 644 LAVTTADNGFKILA 657 (1096)
Q Consensus 644 l~~~~~dg~i~iwd 657 (1096)
|+.++.|=.|++++
T Consensus 447 L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 447 LGIAGSDLQVYICK 460 (506)
T ss_pred EEeecceeEEEEEe
Confidence 99998776666554
No 112
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.9e-23 Score=189.49 Aligned_cols=251 Identities=15% Similarity=0.175 Sum_probs=196.9
Q ss_pred CcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecC-
Q 001343 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK- 841 (1096)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~- 841 (1096)
|.+.|.|.+|+|+|+.+++++.|.+|++..++...-+. +|..+. +.- |.+.|+.++|-.
T Consensus 88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~----------------~g~dle--~nm--hdgtirdl~fld~ 147 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA----------------TGHDLE--FNM--HDGTIRDLAFLDD 147 (350)
T ss_pred cCccEEEEEecCccCeEEecCCCceEEEEecccccccc----------------cCccee--eee--cCCceeeeEEecC
Confidence 88999999999999989999999999998775433222 222222 222 889999999954
Q ss_pred ---CCcEEEEec--CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccc
Q 001343 842 ---NDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWE 916 (1096)
Q Consensus 842 ---dg~~la~~~--dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~ 916 (1096)
.|.+|++++ |-.|++-|..+|+.+..+.+|.+.|.++- +- ++-.+++|+.|.+|++||+.-.. |+..++...
T Consensus 148 ~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-sw-n~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~ 224 (350)
T KOG0641|consen 148 PESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SW-NGAMFASGSQDKTIRFWDLRVNS-CVNTLDNDF 224 (350)
T ss_pred CCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-Ee-cCcEEEccCCCceEEEEeeeccc-eeeeccCcc
Confidence 458899988 45688889999999999999999998873 23 56799999999999999999877 554333311
Q ss_pred cccceeeecCCCCCCCCCceEEEecCCcEEEEE-ecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEec
Q 001343 917 KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC 995 (1096)
Q Consensus 917 ~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~ 995 (1096)
.-.|-..+.|..+++.|.|++|+++ .|....+||+..++.++.+.+| ...|.++.|||...|+++++.
T Consensus 225 --------~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph---sadir~vrfsp~a~yllt~sy 293 (350)
T KOG0641|consen 225 --------HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH---SADIRCVRFSPGAHYLLTCSY 293 (350)
T ss_pred --------cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCC---ccceeEEEeCCCceEEEEecc
Confidence 0111111589999999999999994 7889999999999999999887 999999999999999999999
Q ss_pred CCcEEEEecCCCc----eeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccC
Q 001343 996 DGNIGVFDADTLR----LRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1060 (1096)
Q Consensus 996 dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~ 1060 (1096)
|..|++-|+...- ...... . |...+. .+.|+| ..--|++.+.|.++.+|-+.
T Consensus 294 d~~ikltdlqgdla~el~~~vv~-------e---hkdk~i--~~rwh~-~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 294 DMKIKLTDLQGDLAHELPIMVVA-------E---HKDKAI--QCRWHP-QDFSFISSSADKTATLWALN 349 (350)
T ss_pred cceEEEeecccchhhcCceEEEE-------e---ccCceE--EEEecC-ccceeeeccCcceEEEeccC
Confidence 9999999987432 111111 2 777776 589999 55668888999999999753
No 113
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=2.2e-23 Score=234.66 Aligned_cols=250 Identities=14% Similarity=0.208 Sum_probs=192.5
Q ss_pred EECCCeEEEEEccCCCccccceeecccccCEEEEEEecC-CCcEEEEEEeCCCcEEEEE-cCCc--------eEEEeeCC
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGR--------KLFNFEGH 493 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d-~~~~~l~s~s~d~~i~iwd-~~~~--------~~~~~~~~ 493 (1096)
|+.++.|++|+......+. .+.+|.+.|.+++|+|+ +. +|++|+.|++|++|| .++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~v~---~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI---KLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCceEE---EEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 6678899999987654333 68899999999999997 56 899999999999999 5432 34567899
Q ss_pred CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC
Q 001343 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
...|.+++|+|... .++++++.||+|++||+++++....+. +...|.+++|+++|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 99999999988532 356799999999999999888776665 4568999999999999998886 89999999999
Q ss_pred CeeeEEEcCcCccc----eEEEEEeCCCCEEEEEEcCC----eEEEEeCCC-CeEEEEeecCCCCCCccEEEEeCCCCEE
Q 001343 574 GTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDS----QIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1096)
Q Consensus 574 ~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l 644 (1096)
++.+.++.+|.+.. +....|++++.++++++.|+ .|++||++. ++++.....+.....+......+++.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999987632 12233568889999988664 799999985 6667666655543333344445568899
Q ss_pred EEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCC
Q 001343 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA 689 (1096)
Q Consensus 645 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 689 (1096)
++|+.|+.|++|++..+. +..+... ....+...++|.|..
T Consensus 279 lsGkGD~tIr~~e~~~~~--~~~l~~~---~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGS--IRKVNEY---KSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEECCCeEEEEEccCCc--EEeeccc---ccCCCccceEEcccc
Confidence 999999999999997662 2222221 123456677887754
No 114
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.5e-22 Score=223.16 Aligned_cols=521 Identities=14% Similarity=0.153 Sum_probs=321.9
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCc-EEEEEEeCCCcEEEEE-cCCceE
Q 001343 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL-LCVVTCGDDKLIKVWE-LSGRKL 487 (1096)
Q Consensus 410 ~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~-~~l~s~s~d~~i~iwd-~~~~~~ 487 (1096)
..-.||+|+++++.+.. ..|+||...+|.++. .+.+|..++..+.+.|.... .++++++.||.|++|| ..+..+
T Consensus 20 ~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTG-NFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL 95 (792)
T ss_pred cccccccCCcEEEEeeC-CEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence 34578999999987765 599999999999888 68899999999999987663 3788999999999999 889888
Q ss_pred EEeeCCCCCeEEEEeeec--CCCcEEEEEECCC------------eEEEEEcCCCCeee-EEeCCCCcEEEEEEcCCCCE
Q 001343 488 FNFEGHEAPVYSICPHHK--ENIQFIFSTAIDG------------KIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSR 552 (1096)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~--~~~~~l~s~~~dg------------~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~ 552 (1096)
+++..+. ++..+.+.+. .....+..+..|. +++-+.+.+..... .+......-.++.+++.|.+
T Consensus 96 kt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 96 KTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 8886433 3333333111 0001111111111 11111111110000 00001112467788888888
Q ss_pred EEEEeeccCCCCeEEEEeCCCCeee---EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC--CeEEEEeecCC
Q 001343 553 LFSCGTSKDGDSFLVEWNESEGTIK---RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNILTSTDAEG 627 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~ 627 (1096)
...+. +..+.+|+..+.... +....++...+.+.+++|+++++++|..||+|.+|.--. +........|-
T Consensus 175 ~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 175 KGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred EEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 77766 678899988775411 112223333578899999999999999999999997433 22222222333
Q ss_pred CCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccC
Q 001343 628 GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707 (1096)
Q Consensus 628 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~ 707 (1096)
|...|++++|+++|.+|.+|+..|.+.+|.+.++. .+-++. ...+|..+.++||+.+.+..
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPR-----Lgs~I~~i~vS~ds~~~sl~------------ 310 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPR-----LGSPILHIVVSPDSDLYSLV------------ 310 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCC--cccccc-----cCCeeEEEEEcCCCCeEEEE------------
Confidence 44489999999999999999999999999999884 222222 34567889998888776332
Q ss_pred CCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcC--C-CCCCcccEEEEEEecCCceEEEeec
Q 001343 708 PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP--E-STDTSSKVVRLLYTNSAVGLLALGS 784 (1096)
Q Consensus 708 ~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~-~~~~~~~i~~l~~s~~~~~l~~~~~ 784 (1096)
..|+.|.+....+.........+..+ . .+...+-.+.++++|.-..++-.+.
T Consensus 311 -------------------------~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~ 365 (792)
T KOG1963|consen 311 -------------------------LEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH 365 (792)
T ss_pred -------------------------ecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCC
Confidence 22344433333210000000000000 0 0113445677888885555777888
Q ss_pred CCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec---------CC--e
Q 001343 785 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT---------GG--K 853 (1096)
Q Consensus 785 dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~---------dg--~ 853 (1096)
.|.|.+|++.....- ....+...+...+.. .+...+++++.+-+|.+++|+. || .
T Consensus 366 ~g~vQ~ydl~td~~i------~~~~v~~~n~~~~~~--------n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~ 431 (792)
T KOG1963|consen 366 PGHVQFYDLYTDSTI------YKLQVCDENYSDGDV--------NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS 431 (792)
T ss_pred CceEEEEecccccee------eeEEEEeecccCCcc--------eeEEeeeeehhhccceEEEEeeeeehhhhccCceEE
Confidence 899999998654321 000111111111110 1445688899999999999974 22 3
Q ss_pred EEEEEccc----ceEEEe-ecCCCCCeeEEEEecCCCc-EEEEeeCCCeEEEEeeccce-----eeeeecccccccccee
Q 001343 854 ISLFNMMT----FKVMTT-FMSPPPASTFLAFHPQDNN-IIAIGTEDSTIHIYNVRVDE-----LCVWSIDTWEKRKSVT 922 (1096)
Q Consensus 854 v~iwd~~~----~~~~~~-~~~h~~~i~~l~~s~~d~~-~l~s~~~dg~i~iw~~~~~~-----~~~w~~~~~~~~~~~~ 922 (1096)
+++|-... ..+... ...|...+...+|.+.... .+++++.||.++||-+...+ .-.|....
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~-------- 503 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKA-------- 503 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEee--------
Confidence 88997633 233333 3478777776666542333 89999999999999986554 11222111
Q ss_pred eecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEeeCC--cEEEEEecCCcEE
Q 001343 923 IHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS--QLVFATFCDGNIG 1000 (1096)
Q Consensus 923 ~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg--~~la~~~~dg~i~ 1000 (1096)
+..+ |.. .++.++||.||..|+++.|+.|.+||..+...+....+.. ..++..+.|.... ...++....+...
T Consensus 504 i~sy--~k~-~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 578 (792)
T KOG1963|consen 504 IGSY--HKT-PITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSR--NWPIAELLFTAQTQNDGALVHATQQRLS 578 (792)
T ss_pred eecc--ccC-cccchhhcCCCcEEEEecCCEEEEecCCChhhhhcccccc--ccchHhHhhhcccccccceeeccCceEe
Confidence 1222 343 8999999999999999999999999998843222222221 3444444443321 1233445667899
Q ss_pred EEecCCCceeE
Q 001343 1001 VFDADTLRLRC 1011 (1096)
Q Consensus 1001 vwd~~~~~~~~ 1011 (1096)
+|++-++.+..
T Consensus 579 ~WNll~~~l~w 589 (792)
T KOG1963|consen 579 VWNLLSMSLIW 589 (792)
T ss_pred hHhhhhhheec
Confidence 99988776544
No 115
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.5e-25 Score=241.08 Aligned_cols=289 Identities=13% Similarity=0.163 Sum_probs=210.3
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccc--------eeecccccCEEEEEEec---CCCcEEEEEEe
Q 001343 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH--------SQIDAHVGAVNDLAFAY---PNKLLCVVTCG 472 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~--------~~l~~h~~~v~~l~~s~---d~~~~~l~s~s 472 (1096)
.|.+.|+++.||+||+|||+||.|+.|+||.+...+....- ..+.+ .+.+..+.-++ .++....-.+.
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~-~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNA-NSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhh-ccccCcccccccccccccccccccc
Confidence 79999999999999999999999999999998763321100 00000 00011111111 01100112222
Q ss_pred CCCcEEEEE----cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcC
Q 001343 473 DDKLIKVWE----LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA 548 (1096)
Q Consensus 473 ~d~~i~iwd----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~ 548 (1096)
....+.+-+ ...++++.|.||.+.|..+.|+. + ++|++++.|.+||+|++....++..+ .|+..|+|++|+|
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n-~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnP 419 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--N-NFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNP 419 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheeccccc--C-CeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecc
Confidence 222222222 35678889999999999999975 3 59999999999999999988888777 5778899999999
Q ss_pred -CCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCC
Q 001343 549 -DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (1096)
Q Consensus 549 -~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (1096)
|.+++++|+- |+.++||++...+.+.-...+ ..|++++|.|+|+..++|+.+|.+++|+....+.......+.
T Consensus 420 vDDryFiSGSL----D~KvRiWsI~d~~Vv~W~Dl~--~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 420 VDDRYFISGSL----DGKVRLWSISDKKVVDWNDLR--DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred cCCCcEeeccc----ccceEEeecCcCeeEeehhhh--hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 7789999998 999999999988887766665 389999999999999999999999999999887766554322
Q ss_pred C------CCCccEEEEeC-CCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCc
Q 001343 628 G------LPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1096)
Q Consensus 628 ~------~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~ 700 (1096)
+ ...|+.+.|.| +...+++.+.|..|+|||..+. ..+..+.+....-. -
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n~~S---Q-------------------- 549 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKGFRNTSS---Q-------------------- 549 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhcccccCCc---c--------------------
Confidence 1 12699999998 4456888889999999999665 45555555432211 0
Q ss_pred eeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeee
Q 001343 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (1096)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~ 744 (1096)
....++.||+++++++.|..|.+|+..
T Consensus 550 -----------------~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 550 -----------------ISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred -----------------eeeeEccCCCEEEEeecCceEEEEeCC
Confidence 112345577777899999999999986
No 116
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.7e-21 Score=213.32 Aligned_cols=269 Identities=15% Similarity=0.203 Sum_probs=218.3
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.|+..-+.++|.|+|. ++.+++.||.|++|+.......- ..+.-++..|.+++. ++.+|
T Consensus 11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P------------------~ti~~~g~~v~~ia~--~s~~f 69 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEP------------------ETIDISGELVSSIAC--YSNHF 69 (933)
T ss_pred hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCC------------------chhhccCceeEEEee--cccce
Confidence 4888899999999999 78999999999999987652110 112337777887776 45599
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEE
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~ 500 (1096)
++|+.+++|.+|.+.+++.-. .+....-++++++|+-+|+ +++.||.|-.|++-+ .++.....+++|.++|.++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred EEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 999999999999998876543 2444667899999999999 899999999999999 8888899999999999999
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC--------CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~ 572 (1096)
.++| ++.+|++.+.||.|++||++++.....+..- ...+..++|+|+|..+++.+. ++.|++|+..
T Consensus 145 ~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r~ 218 (933)
T KOG1274|consen 145 SYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSRK 218 (933)
T ss_pred eEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEccC
Confidence 9987 6689999999999999999987766544321 335778999999777776666 9999999999
Q ss_pred CCeeeEEEcCcCcc-ceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEE
Q 001343 573 EGTIKRTYAGFRKK-SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1096)
Q Consensus 573 ~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1096)
++.....+...... .+..+.|+|+|.+|++++.||.|.|||.++.+. |.....|.+++|.|+.+.+-.-.
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~ 289 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLIT 289 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEe
Confidence 99988888754332 488899999999999999999999999997222 33334788899988876554433
No 117
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1e-24 Score=203.02 Aligned_cols=252 Identities=20% Similarity=0.299 Sum_probs=207.9
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEec--CCCcEEEEEEeCCCcEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~--d~~~~~l~s~s~d~~i~ 478 (1096)
+-..|...|..+...--|+.||||+.|++|+|+.+..+.....+.+|.||.++|+.++|.. .|. +|++|+.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 3567999999999888999999999999999999998776566668999999999999987 677 999999999999
Q ss_pred EEE-cCCc--eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe---eeEEeCCCCcEEEEEEcCC---
Q 001343 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSAD--- 549 (1096)
Q Consensus 479 iwd-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~--- 549 (1096)
||. ..|+ ....+..|...|++++|.|..-|-.|++++.||.|.+.+++.... ......|.-.|++++|.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 999 6653 345567899999999999998899999999999999999887622 2345667778999999986
Q ss_pred C-----------CEEEEEeeccCCCCeEEEEeCCCC--eeeEEEcCcCccceEEEEEeCCC----CEEEEEEcCCeEEEE
Q 001343 550 G-----------SRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQ----NHFLAVGEDSQIKFW 612 (1096)
Q Consensus 550 ~-----------~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~iw 612 (1096)
| +.|++++. |..|+||+..++ +..+++.+|.+ -+..++|.|.- ..|++++.||++.||
T Consensus 164 g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred ccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 4 56899887 999999998875 34466889988 88999999964 579999999999999
Q ss_pred eCCCC-eEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 613 DMDNV-NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 613 d~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
..+.. +.......+.-...+..+.|+..|+.|++++.|+.|.+|.-.
T Consensus 239 t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 87632 111111112223378999999999999999999999999754
No 118
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=203.07 Aligned_cols=314 Identities=14% Similarity=0.127 Sum_probs=208.2
Q ss_pred cccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcc--ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcE
Q 001343 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i 477 (1096)
..+++|.+.|++++||.||++||+++.|++|++|+++.-... +.+ ...-.-+..+.+.|+||-+. +++++-...++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~-R~nve~dhpT~V~FapDc~s-~vv~~~~g~~l 157 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCI-RQNVEYDHPTRVVFAPDCKS-VVVSVKRGNKL 157 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHh-hccccCCCceEEEECCCcce-EEEEEccCCEE
Confidence 358999999999999999999999999999999999763211 111 11122235788999999886 66666667788
Q ss_pred EEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEe
Q 001343 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 478 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
++|....+.-..+. ...+- ||--. ....|.-.+..+-...++++|++++
T Consensus 158 ~vyk~~K~~dG~~~-----~~~v~---------------------~D~~~-----f~~kh~v~~i~iGiA~~~k~imsas 206 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGS-----HHFVH---------------------IDNLE-----FERKHQVDIINIGIAGNAKYIMSAS 206 (420)
T ss_pred EEEEeeecccCCCC-----ccccc---------------------ccccc-----cchhcccceEEEeecCCceEEEEec
Confidence 88862211111111 11111 11000 0011222444566667788888888
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCC---CC---eEEEEeecCCCCCC
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD---NV---NILTSTDAEGGLPN 631 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~---~~~~~~~~~~~~~~ 631 (1096)
. +..|.+|+++ |+.+..+..... .....+.+|+|+++++++..-.|++|.+- .| +....++..+|...
T Consensus 207 ~----dt~i~lw~lk-Gq~L~~idtnq~-~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~sa 280 (420)
T KOG2096|consen 207 L----DTKICLWDLK-GQLLQSIDTNQS-SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSA 280 (420)
T ss_pred C----CCcEEEEecC-Cceeeeeccccc-cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhh
Confidence 7 8889999988 888888776655 55568899999999999998999999863 22 22344445555669
Q ss_pred ccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcC
Q 001343 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1096)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~ 711 (1096)
|..++|+++...+++.+.||++++||.+-..+. ..+
T Consensus 281 V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~------~qD-------------------------------------- 316 (420)
T KOG2096|consen 281 VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA------GQD-------------------------------------- 316 (420)
T ss_pred eeeeeeCCCcceeEEEecCCcEEEeeccceEec------CCC--------------------------------------
Confidence 999999999999999999999999997533110 000
Q ss_pred CCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEe
Q 001343 712 SPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 791 (1096)
Q Consensus 712 ~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw 791 (1096)
. ..++.... .+.. ..+....++.+|.|+ +++.+....+++|
T Consensus 317 --------------p---------k~Lk~g~~------------pl~a---ag~~p~RL~lsP~g~-~lA~s~gs~l~~~ 357 (420)
T KOG2096|consen 317 --------------P---------KILKEGSA------------PLHA---AGSEPVRLELSPSGD-SLAVSFGSDLKVF 357 (420)
T ss_pred --------------c---------hHhhcCCc------------chhh---cCCCceEEEeCCCCc-EEEeecCCceEEE
Confidence 0 00000000 0000 223344788999998 4455555577777
Q ss_pred eccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEc
Q 001343 792 KWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNM 859 (1096)
Q Consensus 792 ~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~ 859 (1096)
.-.. |+.... +. ..|...|.+++|+++|+++|+++|..+++..-
T Consensus 358 ~se~----------------------g~~~~~-~e-~~h~~~Is~is~~~~g~~~atcGdr~vrv~~n 401 (420)
T KOG2096|consen 358 ASED----------------------GKDYPE-LE-DIHSTTISSISYSSDGKYIATCGDRYVRVIRN 401 (420)
T ss_pred Eccc----------------------Cccchh-HH-HhhcCceeeEEecCCCcEEeeecceeeeeecC
Confidence 6432 332221 11 13889999999999999999999999998863
No 119
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.9e-24 Score=205.24 Aligned_cols=290 Identities=16% Similarity=0.229 Sum_probs=239.8
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+.||+..|+.++-......+.+++.|.+.+||.+++|.|+. .+.||.+.|+++.|++.+. ++++++.|++..||.
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~---~Y~GH~GSVNsikfh~s~~--L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA---TYTGHTGSVNSIKFHNSGL--LLLTASGDETAHIWK 218 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeecccccee---eecccccceeeEEeccccc--eEEEccCCcchHHHH
Confidence 88999999999998888899999999999999999999988 5889999999999999998 999999999999994
Q ss_pred --cC-------------C--------------------------ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeE
Q 001343 482 --LS-------------G--------------------------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKI 520 (1096)
Q Consensus 482 --~~-------------~--------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 520 (1096)
.+ + .++..+.+|.+.|.+..|.. .|+.+++++.|.+.
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~--gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA--GGQQMVTASWDRTA 296 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc--Ccceeeeeeccccc
Confidence 10 0 13566789999999999865 56789999999999
Q ss_pred EEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC-eeeEEEcCcCccceEEEEEeCCCCE
Q 001343 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQNH 599 (1096)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~ 599 (1096)
.+||+++++.+..+.+|....+.++-+|..+++++.+. |.+.++||++.. ..+..|+||.+ .++++.|..+ ..
T Consensus 297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr----DtTFRLWDFReaI~sV~VFQGHtd-tVTS~vF~~d-d~ 370 (481)
T KOG0300|consen 297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR----DTTFRLWDFREAIQSVAVFQGHTD-TVTSVVFNTD-DR 370 (481)
T ss_pred eeeeeccCceeccccCcchhccccccCCcceEEEEecc----CceeEeccchhhcceeeeeccccc-ceeEEEEecC-Cc
Confidence 99999999999999999999999999999999999887 999999999843 45678999998 8898999865 57
Q ss_pred EEEEEcCCeEEEEeCCCC-eEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccC
Q 001343 600 FLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (1096)
Q Consensus 600 l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 678 (1096)
+++|++|.+|++||+++. .++.++.... +++.++.+..+..|+.--++..|++||+... + +..+.......++.
T Consensus 371 vVSgSDDrTvKvWdLrNMRsplATIRtdS---~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~-R-laRlPrtsRqgHrR 445 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLRNMRSPLATIRTDS---PANRVAVSKGHPIIAIPHDNRQVRLFDLNGN-R-LARLPRTSRQGHRR 445 (481)
T ss_pred eeecCCCceEEEeeeccccCcceeeecCC---ccceeEeecCCceEEeccCCceEEEEecCCC-c-cccCCcccccccce
Confidence 899999999999999874 5677776544 7899999999999999999999999999544 3 33333223333344
Q ss_pred cceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeee
Q 001343 679 PIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (1096)
Q Consensus 679 ~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~ 744 (1096)
-|.+++|..+-. ---|++++.|..+.-|++.
T Consensus 446 MV~c~AW~eehp-----------------------------------~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 446 MVTCCAWLEEHP-----------------------------------ACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred eeeeeeccccCc-----------------------------------ccccccccccceeeeeEec
Confidence 466666653211 1235688888999889876
No 120
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.3e-22 Score=221.59 Aligned_cols=485 Identities=14% Similarity=0.167 Sum_probs=314.0
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCC---CEEEEE
Q 001343 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG---NYVGVA 424 (1096)
Q Consensus 348 ~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~---~~l~s~ 424 (1096)
..-.||+|+++++.+ .+..|.||...+|+++.. +.+|..++..+.+.|.. .++.++
T Consensus 20 ~~avfSnD~k~l~~~--~~~~V~VyS~~Tg~~i~~-------------------l~~~~a~l~s~~~~~~~~~~~~~~~~ 78 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLC--TGNFVKVYSTATGECITS-------------------LEDHTAPLTSVIVLPSSENANYLIVC 78 (792)
T ss_pred cccccccCCcEEEEe--eCCEEEEEecchHhhhhh-------------------cccccCccceeeecCCCccceEEEEE
Confidence 345699999964443 578999999999998853 88999999999998854 478899
Q ss_pred ECCCeEEEEEccCCCccccceeeccc--c-------cC------------------------------------------
Q 001343 425 FTKHLIQLYSYAGSNDLRQHSQIDAH--V-------GA------------------------------------------ 453 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~l~~h--~-------~~------------------------------------------ 453 (1096)
+.||.|++||...+..++.+. ...+ . ..
T Consensus 79 sl~G~I~vwd~~~~~Llkt~~-~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~ 157 (792)
T KOG1963|consen 79 SLDGTIRVWDWSDGELLKTFD-NNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFL 157 (792)
T ss_pred ecCccEEEecCCCcEEEEEEe-cCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhh
Confidence 999999999998877655321 0000 0 00
Q ss_pred -----EEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCce-EEE---eeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEE
Q 001343 454 -----VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK-LFN---FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523 (1096)
Q Consensus 454 -----v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~-~~~---~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 523 (1096)
-.++.+++.|. +...-.+..+.+|+ ..+.. ... -..|...+++.+++| ++.++++|..||.|.+|
T Consensus 158 ~~~~~~~~I~~~~~ge---~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp--n~~~~Aa~d~dGrI~vw 232 (792)
T KOG1963|consen 158 KEHQEPKSIVDNNSGE---FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP--NERYLAAGDSDGRILVW 232 (792)
T ss_pred hhhcCCccEEEcCCce---EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc--ccceEEEeccCCcEEEE
Confidence 01122222222 22223345566676 33321 111 134677789999987 56899999999999999
Q ss_pred EcCC----CCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCE
Q 001343 524 LYDT----MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599 (1096)
Q Consensus 524 d~~~----~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 599 (1096)
.--. ......+.-|...|.+++|+++|.+|++||. ++.+.+|.+.+++ ++|-..-+.++..+.++||+..
T Consensus 233 ~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~----E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~ 306 (792)
T KOG1963|consen 233 RDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR----EGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDL 306 (792)
T ss_pred eccccccccccceEEEecccccceeEEecCCceEeeccc----ceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCe
Confidence 5322 1223356667779999999999999999998 9999999999998 4444333448999999999999
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEEeecCCC---------CCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCcccccccc-
Q 001343 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGG---------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVE- 669 (1096)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 669 (1096)
.....+|+.|.+....+.....++.+... .+-.+.++++|..+.++..+..|.|.+||+.+.... ..+.
T Consensus 307 ~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i-~~~~v 385 (792)
T KOG1963|consen 307 YSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI-YKLQV 385 (792)
T ss_pred EEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee-eeEEE
Confidence 99999999999999877655544443221 224567889998888899999999999999887433 2221
Q ss_pred ---CC-Ccc-cccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeee
Q 001343 670 ---NP-PFE-ALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (1096)
Q Consensus 670 ---~~-~~~-~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~ 744 (1096)
.+ ... .....+++++.+..|.++++..... ...-..+..-.+++|...
T Consensus 386 ~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~---------------------------d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 386 CDENYSDGDVNIQVGITAVARSRFGSWMATLEARI---------------------------DKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred EeecccCCcceeEEeeeeehhhccceEEEEeeeee---------------------------hhhhccCceEEEEEEEEc
Confidence 11 111 2233455666666677765443210 000011112457889887
Q ss_pred eeecCCceEE-EEcCCCCCCcccEEEEEEec-CCc-eEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccc
Q 001343 745 EIVDSGQCRL-VTMPESTDTSSKVVRLLYTN-SAV-GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLM 821 (1096)
Q Consensus 745 ~~~~~~~~~~-~~~~~~~~~~~~i~~l~~s~-~~~-~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~ 821 (1096)
....+-.... +..| |...+...++.+ ... .+++++.||.+++|-+......-. .-..|. |.
T Consensus 439 ~~~kt~~L~T~I~~P----H~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k-------~~s~W~-----c~ 502 (792)
T KOG1963|consen 439 PNSKTFILNTKINNP----HGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYK-------KSSNWT-----CK 502 (792)
T ss_pred CCcceeEEEEEEecC----CCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCc-------CccceE-----Ee
Confidence 5333222222 2222 666666666554 222 688999999999999854321000 001121 22
Q ss_pred cccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccc-eEEEeecCCCCCeeEEEEecC-CCcEEEEeeCCCeEEE
Q 001343 822 ANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQ-DNNIIAIGTEDSTIHI 899 (1096)
Q Consensus 822 ~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~-~~~~~~~~h~~~i~~l~~s~~-d~~~l~s~~~dg~i~i 899 (1096)
.+ |..|..++++++||.||.+||.+.+++|.+||..+. .+..+...-..++..+.|..+ -....++....+.+.+
T Consensus 503 ~i---~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 579 (792)
T KOG1963|consen 503 AI---GSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSV 579 (792)
T ss_pred ee---eccccCcccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEeh
Confidence 11 112788999999999999999999999999999873 333333222333433333221 1123445556778999
Q ss_pred Eeeccceeeeeecc
Q 001343 900 YNVRVDELCVWSID 913 (1096)
Q Consensus 900 w~~~~~~~~~w~~~ 913 (1096)
|++.+.. ..|...
T Consensus 580 WNll~~~-l~w~~s 592 (792)
T KOG1963|consen 580 WNLLSMS-LIWNLS 592 (792)
T ss_pred Hhhhhhh-eecchh
Confidence 9999887 666443
No 121
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.3e-23 Score=201.02 Aligned_cols=293 Identities=13% Similarity=0.160 Sum_probs=223.8
Q ss_pred CCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEE
Q 001343 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1096)
Q Consensus 333 ~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1096)
.|.++..++.|.. -.|+.||+.|. +||+|..||.|.|||+.|...- .++.+|..+|.++
T Consensus 13 ~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~ia-------------------r~lsaH~~pi~sl 71 (405)
T KOG1273|consen 13 YPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIA-------------------RMLSAHVRPITSL 71 (405)
T ss_pred ChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchh-------------------hhhhccccceeEE
Confidence 4566677788776 89999999999 7999999999999999886633 3588999999999
Q ss_pred EEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEe-e
Q 001343 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF-E 491 (1096)
Q Consensus 413 ~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~ 491 (1096)
+||+||+.|++++.|..|++||+..|.+++.+. ...+|+.+.|+|-..+ ..+.+-.+..-.+-+... ..+++ .
T Consensus 72 ~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir----f~spv~~~q~hp~k~n-~~va~~~~~sp~vi~~s~-~~h~~Lp 145 (405)
T KOG1273|consen 72 CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR----FDSPVWGAQWHPRKRN-KCVATIMEESPVVIDFSD-PKHSVLP 145 (405)
T ss_pred EecCCCCEeeeecCCceeEEEeccCCCceeEEE----ccCccceeeeccccCC-eEEEEEecCCcEEEEecC-Cceeecc
Confidence 999999999999999999999999999877542 5789999999998776 334343344444445221 22222 1
Q ss_pred C-CCCCe----EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC-CcEEEEEEcCCCCEEEEEeeccCCCCe
Q 001343 492 G-HEAPV----YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1096)
Q Consensus 492 ~-~~~~v----~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~l~~~~~~~~~~~~ 565 (1096)
. ..+.. .+..| +..|+++++|...|.+.++|..+.+++..++... ..|..+.++..|++++..+. |..
T Consensus 146 ~d~d~dln~sas~~~f--dr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRv 219 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVF--DRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRV 219 (405)
T ss_pred CCCccccccccccccc--cCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----Cce
Confidence 1 11111 11234 4467899999999999999999999988877766 68999999999999999887 999
Q ss_pred EEEEeCCCC-------ee--eEEEcC-cCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccE
Q 001343 566 LVEWNESEG-------TI--KRTYAG-FRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1096)
Q Consensus 566 i~iwd~~~~-------~~--~~~~~~-~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1096)
|+.|+++.- ++ .+.++. -+...-.+++|+.+|.++++++ .-..++||....|.+++.+.+..+. ....
T Consensus 220 IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~D 298 (405)
T KOG1273|consen 220 IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLD 298 (405)
T ss_pred EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heee
Confidence 999997621 11 111111 0112345689999999998877 4567999999999999999877643 6778
Q ss_pred EEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 635 LRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 635 ~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
+.|+|-...+++. ..|.+++|....
T Consensus 299 V~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 299 VNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred cccccceeeeeec-cCCceEEEEeec
Confidence 9999988888877 678999998644
No 122
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5e-23 Score=198.92 Aligned_cols=304 Identities=13% Similarity=0.185 Sum_probs=218.0
Q ss_pred EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee----EEeCCCCcEEEEEEcCCCCEEEEEeeccCCC
Q 001343 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~ 563 (1096)
..+++|...|++++|+. ||++|++++.|++|++|+++...... ....+-+..+.+.|+||-+-+++... ..
T Consensus 80 ~~LKgH~~~vt~~~FsS--dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~---~g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSS--DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK---RG 154 (420)
T ss_pred hhhhccCCceeeeEEcC--CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc---cC
Confidence 45789999999999965 88999999999999999988643321 12223335788999999987776554 26
Q ss_pred CeEEEEeCCC---CeeeEE--------EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCc
Q 001343 564 SFLVEWNESE---GTIKRT--------YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1096)
Q Consensus 564 ~~i~iwd~~~---~~~~~~--------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1096)
..+++|-+.. |..... |...+.-.+-.+-....+.+|++++.|..|.+|+++ |+.+..+..... .-
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--~n 231 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS--SN 231 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc--cc
Confidence 7888887642 221111 111111123334555677899999999999999998 888888876544 55
Q ss_pred cEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCC
Q 001343 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1096)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~ 712 (1096)
+..+.+|+|+++++++..-.|++|.+ .|..+|.+-
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~-------------------------~f~kdG~fq-------------------- 266 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEP-------------------------IFTKDGTFQ-------------------- 266 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEE-------------------------EeccCcchh--------------------
Confidence 78899999999999999999999975 222222211
Q ss_pred CcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEee
Q 001343 713 PIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 792 (1096)
Q Consensus 713 ~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~ 792 (1096)
...++ +.+.| |...|..++|+++..++++.+.||+.++||
T Consensus 267 -----------------------ev~rv--------------f~LkG---H~saV~~~aFsn~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 267 -----------------------EVKRV--------------FSLKG---HQSAVLAAAFSNSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred -----------------------hhhhh--------------heecc---chhheeeeeeCCCcceeEEEecCCcEEEee
Confidence 11222 34556 999999999999999999999999999999
Q ss_pred ccCCc-cCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeec-C
Q 001343 793 WHRNE-QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM-S 870 (1096)
Q Consensus 793 ~~~~~-~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~-~ 870 (1096)
.+..- ...+.+. +.+|. ..+. +....-..+++||+|+.||.+....+++|..++|+....++ .
T Consensus 307 tdVrY~~~qDpk~----------Lk~g~---~pl~--aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~ 371 (420)
T KOG2096|consen 307 TDVRYEAGQDPKI----------LKEGS---APLH--AAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDI 371 (420)
T ss_pred ccceEecCCCchH----------hhcCC---cchh--hcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHh
Confidence 86421 1111111 11221 0111 12233347999999999999998889999999998877765 6
Q ss_pred CCCCeeEEEEecCCCcEEEEeeCCCeEEEEe
Q 001343 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1096)
Q Consensus 871 h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~ 901 (1096)
|...|.+++|++ +|++++++++ ..+++..
T Consensus 372 h~~~Is~is~~~-~g~~~atcGd-r~vrv~~ 400 (420)
T KOG2096|consen 372 HSTTISSISYSS-DGKYIATCGD-RYVRVIR 400 (420)
T ss_pred hcCceeeEEecC-CCcEEeeecc-eeeeeec
Confidence 889999999999 9999998875 4566654
No 123
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=5.5e-24 Score=217.35 Aligned_cols=292 Identities=14% Similarity=0.215 Sum_probs=235.3
Q ss_pred ceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 336 ~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
+.+.+|.|..-|.++.+|...+ .+.||+ .|.|+|||+....... ++. +.. .....+-|.++.+.
T Consensus 411 rq~~tL~HGEvVcAvtIS~~tr-hVyTgG-kgcVKVWdis~pg~k~--Pvs-----------qLd-cl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISQPGNKS--PVS-----------QLD-CLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcc-eeEecC-CCeEEEeeccCCCCCC--ccc-----------ccc-ccCcccceeeeEec
Confidence 4466788999999999999998 588884 6899999997543210 110 111 22246689999999
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCC
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~ 494 (1096)
|||+.|++|+.-.++.|||+.....- ...++..-.-..++++.+||.+ +.++|..||.|.||| .+...++.|+||.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTpr-ikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcc-hhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 99999999999999999999875432 1113444445678899999999 899999999999999 8888899999999
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
..+.|+.+++ +|..|.+|+-|.+||.||++.+..+..... ...|.++.++|++.++++|-. ++.+.+.... +
T Consensus 552 DGascIdis~--dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-k 623 (705)
T KOG0639|consen 552 DGASCIDISK--DGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-K 623 (705)
T ss_pred CCceeEEecC--CCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecC-C
Confidence 9999999965 778999999999999999998877665443 347999999999999999986 7777776644 3
Q ss_pred eeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEE
Q 001343 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1096)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1096)
.....+..|.. .|.++.|.+.|+++++.+.|+.+..|...-|..+...... ..|.++.++.|.++|++|+.|..-.
T Consensus 624 p~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 624 PEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred ccceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceE
Confidence 33344555555 8889999999999999999999999999888777665433 3799999999999999999998888
Q ss_pred EEEc
Q 001343 655 ILAN 658 (1096)
Q Consensus 655 iwd~ 658 (1096)
+|.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8865
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.3e-23 Score=211.27 Aligned_cols=223 Identities=15% Similarity=0.192 Sum_probs=194.0
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c--
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-- 482 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~-- 482 (1096)
.+.|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||. +|+|||.||.|.+|. .
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence 4589999999999999999899999999999999887 5789999999999999999 999999999999997 2
Q ss_pred -------CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 483 -------SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 483 -------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
+-++++.|..|.-+|+++...+.+-..++++++.|.++++||+..+..+..+..+ ..+.+++++|.++.+++
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYI 234 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEe
Confidence 2357888999999999999887766679999999999999999988777766544 46999999999999999
Q ss_pred EeeccCCCCeEEEEeCCC----------------CeeeEEEcCcCc-cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe
Q 001343 556 CGTSKDGDSFLVEWNESE----------------GTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~----------------~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1096)
|+. +|.|.+.++.. +..+..+.||.+ ..|+|++++-||..|++|+.||.++|||+.+.+
T Consensus 235 Gt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 235 GTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cCC----cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 987 99998877643 234556777776 589999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCccEEEEeCC
Q 001343 619 ILTSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 619 ~~~~~~~~~~~~~v~~~~~s~~ 640 (1096)
+++++....+ +|+.+.+.|-
T Consensus 311 ~iRtl~~~kg--pVtnL~i~~~ 330 (476)
T KOG0646|consen 311 CIRTLQTSKG--PVTNLQINPL 330 (476)
T ss_pred HHHHHhhhcc--ccceeEeecc
Confidence 9988875433 8899988764
No 125
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=2.1e-23 Score=222.36 Aligned_cols=264 Identities=16% Similarity=0.268 Sum_probs=215.5
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEE-EEEecCCCcEEEEEEeCCCcEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVND-LAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~-l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
.+.+|+..|..+++.+. ..+++++.||++++|+-..++.+.. ..+.+|.+.|.. +++.+..+. .+++|+.|++|.+
T Consensus 9 ~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~-~~~~~~~g~i~~~i~y~e~~~~-~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLET-HAFEGPKGFIANSICYAESDKG-RLVVGGMDTTIIV 85 (745)
T ss_pred EeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccc-eecccCcceeeccceeccccCc-ceEeecccceEEE
Confidence 48899999999887654 4888999999999999876554442 257788888887 888863333 6999999999999
Q ss_pred EE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
|. ....++..+++|+..|.+++... ++ .+++||.|.++++| ..++....+.+|...|.+++.-|++ .+++|+.
T Consensus 86 ~~~~~~~P~~~LkgH~snVC~ls~~~--~~-~~iSgSWD~TakvW--~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsa 159 (745)
T KOG0301|consen 86 FKLSQAEPLYTLKGHKSNVCSLSIGE--DG-TLISGSWDSTAKVW--RIGELVYSLQGHTASVWAVASLPEN-TYVTGSA 159 (745)
T ss_pred EecCCCCchhhhhccccceeeeecCC--cC-ceEecccccceEEe--cchhhhcccCCcchheeeeeecCCC-cEEeccC
Confidence 99 88899999999999999998633 33 49999999999999 4556667789999999999999988 6777776
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
|..|++|.- ++.+++|.+|.+ .|..+++-++ ..|++++.||.|+.|++ +|+.+....+|.. .|++++..
T Consensus 160 ----DKtIklWk~--~~~l~tf~gHtD-~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn--~vYsis~~ 228 (745)
T KOG0301|consen 160 ----DKTIKLWKG--GTLLKTFSGHTD-CVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTN--FVYSISMA 228 (745)
T ss_pred ----cceeeeccC--Cchhhhhccchh-heeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccce--EEEEEEec
Confidence 999999975 889999999998 8999998876 46899999999999999 7788877777655 89999988
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeE
Q 001343 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
.++..+++++.|++++||+.. .+.+.+.-+.. .++++.+-++|..+
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~---e~~q~I~lPtt-----siWsa~~L~NgDIv 274 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD---ECVQVITLPTT-----SIWSAKVLLNGDIV 274 (745)
T ss_pred CCCCeEEEecCCceEEEeecC---ceEEEEecCcc-----ceEEEEEeeCCCEE
Confidence 888999999999999999976 34444443322 35566666666543
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.1e-23 Score=196.20 Aligned_cols=252 Identities=18% Similarity=0.260 Sum_probs=203.0
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC--CCC
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGN 419 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~ 419 (1096)
.|.+-|..+...--|++ |||++.|++|+|+.+.++.... ....|.||.++|..++|.. -|.
T Consensus 9 ~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~ 71 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGT 71 (299)
T ss_pred hhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCc
Confidence 48889999999999994 9999999999999998765311 1124899999999999977 799
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCc--eEEEeeCCCC
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGR--KLFNFEGHEA 495 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~--~~~~~~~~~~ 495 (1096)
+||+++.||.|.||.-++| ...+..+...|...|++++|.|.+-.+.|++++.||.|.|.+ .+|. ..+....|.-
T Consensus 72 iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~ 150 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI 150 (299)
T ss_pred EeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc
Confidence 9999999999999999888 444444677899999999999998888999999999999998 3322 2244578999
Q ss_pred CeEEEEeeecCC-C-----------cEEEEEECCCeEEEEEcCCCCee--eEEeCCCCcEEEEEEcCCC----CEEEEEe
Q 001343 496 PVYSICPHHKEN-I-----------QFIFSTAIDGKIKAWLYDTMGSR--VDYDAPGHWCTTMLYSADG----SRLFSCG 557 (1096)
Q Consensus 496 ~v~~~~~~~~~~-~-----------~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~~----~~l~~~~ 557 (1096)
.|++++|.|..- | ..|++|+.|..|+||+.+...-. ..+..|...|..++|.|.- .+|++++
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 999999987521 1 56999999999999998875332 2478899999999999965 4688888
Q ss_pred eccCCCCeEEEEeCCCC--eeeEE-EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 558 TSKDGDSFLVEWNESEG--TIKRT-YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~--~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
. |+.+.||..... .-..+ +.... ..+..+.|+..|+.|++++.|+.|.+|.-..
T Consensus 231 q----Dg~viIwt~~~e~e~wk~tll~~f~-~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 231 Q----DGTVIIWTKDEEYEPWKKTLLEEFP-DVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred C----CCcEEEEEecCccCcccccccccCC-cceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 6 999999976522 11122 22222 3788999999999999999999999998654
No 127
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.2e-22 Score=193.70 Aligned_cols=271 Identities=16% Similarity=0.112 Sum_probs=211.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCC
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~ 484 (1096)
....|..|.|+|.+..|++++.||++++||+....... .-.|..++.+++|.++. .+++|+.||.|+.+|.+.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~---~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADES---TIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCc---eEEEeccCceEEEEEecC
Confidence 46789999999999999999999999999998864333 23599999999999865 489999999999999666
Q ss_pred ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCC
Q 001343 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1096)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~ 564 (1096)
.....+..|..+|.++...+.. ..+++|+.|++|++||.+.......+.... .|.++..+ |+.|++++. +.
T Consensus 85 ~~~~~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v~--g~~LvVg~~----~r 155 (323)
T KOG1036|consen 85 GNEDQIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDVS--GNRLVVGTS----DR 155 (323)
T ss_pred CcceeeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEecc--CCEEEEeec----Cc
Confidence 6666777899999999998643 579999999999999999755444444333 67777764 567888776 89
Q ss_pred eEEEEeCCCCeeeEEEc-CcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC----eEEEEeecCCC-------CCCc
Q 001343 565 FLVEWNESEGTIKRTYA-GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGG-------LPNL 632 (1096)
Q Consensus 565 ~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~~~v 632 (1096)
.+.+||+++........ ..-+-.+.++++-|++.-+++++-||.|.+=.++.. +....+..|.. .-+|
T Consensus 156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPV 235 (323)
T KOG1036|consen 156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPV 235 (323)
T ss_pred eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEe
Confidence 99999999865443222 112236888999999999999999999988766654 23333333321 1368
Q ss_pred cEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCC
Q 001343 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (1096)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s 697 (1096)
++++|+|--..+|+|+.||.|.+||+.+. +.+..+... ...|.+++|+.+|..||.+.+
T Consensus 236 Nai~Fhp~~~tfaTgGsDG~V~~Wd~~~r-Krl~q~~~~-----~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 236 NAIAFHPIHGTFATGGSDGIVNIWDLFNR-KRLKQLAKY-----ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceeEeccccceEEecCCCceEEEccCcch-hhhhhccCC-----CCceEEEEeccCCCeEEEEec
Confidence 99999999999999999999999999877 555555544 334788999999999977655
No 128
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=3.9e-23 Score=210.75 Aligned_cols=263 Identities=14% Similarity=0.240 Sum_probs=211.9
Q ss_pred eEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC
Q 001343 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1096)
Q Consensus 337 ~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1096)
....+.|.++|+.+.+-|....++|+++..+.|.|||+.+..-.... .+.-.+.-.+.||+..=..++|++
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn~ 187 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWNR 187 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeeccccccccccc
Confidence 34556799999999999999989999999999999998764433210 000011224889998888899999
Q ss_pred C-CCEEEEEECCCeEEEEEccCCCc----cccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c--CCceEE
Q 001343 417 D-GNYVGVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L--SGRKLF 488 (1096)
Q Consensus 417 d-~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~--~~~~~~ 488 (1096)
. .-+|++|+.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.||| . +.++..
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcc
Confidence 5 45889999999999999986543 4444568899999999999998776 899999999999999 6 566777
Q ss_pred EeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe-eeEEeCCCCcEEEEEEcCCCCEE-EEEeeccCCCCeE
Q 001343 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRL-FSCGTSKDGDSFL 566 (1096)
Q Consensus 489 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l-~~~~~~~~~~~~i 566 (1096)
...+|.++|+|++|+|.. +..|++|+.|++|.+||+++... +..+..|...|..+.|+|....+ ++++. |+.+
T Consensus 267 ~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~rl 341 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRRL 341 (422)
T ss_pred cccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCcE
Confidence 889999999999999875 57999999999999999997554 56888999999999999987654 45554 9999
Q ss_pred EEEeCCCC--------------eeeEEEcCcCccceEEEEEeCCCCE-EEEEEcCCeEEEEeCC
Q 001343 567 VEWNESEG--------------TIKRTYAGFRKKSNGVVQFDTTQNH-FLAVGEDSQIKFWDMD 615 (1096)
Q Consensus 567 ~iwd~~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~iwd~~ 615 (1096)
.+||+..- +++..-.||.. .|..+.|+|+..+ |++.++|+.+.||.+.
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 99998742 22344557776 7888999998876 4567899999999986
No 129
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.1e-22 Score=194.92 Aligned_cols=241 Identities=16% Similarity=0.278 Sum_probs=193.6
Q ss_pred Eeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 339 VSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 339 ~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
..+. |.++|+|+|.+ |+ ++|+|+.|.+|+|||+.+...+.. +-.|.+.|+++.|.++
T Consensus 37 F~~~aH~~sitavAVs--~~-~~aSGssDetI~IYDm~k~~qlg~-------------------ll~HagsitaL~F~~~ 94 (362)
T KOG0294|consen 37 FAFSAHAGSITALAVS--GP-YVASGSSDETIHIYDMRKRKQLGI-------------------LLSHAGSITALKFYPP 94 (362)
T ss_pred ccccccccceeEEEec--ce-eEeccCCCCcEEEEeccchhhhcc-------------------eeccccceEEEEecCC
Confidence 3444 99999999996 55 799999999999999988776643 6779999999999998
Q ss_pred CC--EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCC
Q 001343 418 GN--YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1096)
Q Consensus 418 ~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~ 494 (1096)
-. .|++|+.||.|.+|+...-.++. .+++|.+.|+.++.+|.++ +.++.+.|+.+++|| .+|+.-..+.-.
T Consensus 95 ~S~shLlS~sdDG~i~iw~~~~W~~~~---slK~H~~~Vt~lsiHPS~K--LALsVg~D~~lr~WNLV~Gr~a~v~~L~- 168 (362)
T KOG0294|consen 95 LSKSHLLSGSDDGHIIIWRVGSWELLK---SLKAHKGQVTDLSIHPSGK--LALSVGGDQVLRTWNLVRGRVAFVLNLK- 168 (362)
T ss_pred cchhheeeecCCCcEEEEEcCCeEEee---eecccccccceeEecCCCc--eEEEEcCCceeeeehhhcCccceeeccC-
Confidence 65 99999999999999998876666 6889999999999999999 888999999999999 888876665422
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
..-+.+.|.| .|.+++.++. ..|-+|.+++.......... ..+.++.|. ++..+++|+. ++.|.+||..+.
T Consensus 169 ~~at~v~w~~--~Gd~F~v~~~-~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d----~~~i~~~D~ds~ 239 (362)
T KOG0294|consen 169 NKATLVSWSP--QGDHFVVSGR-NKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGD----NEWISLKDTDSD 239 (362)
T ss_pred CcceeeEEcC--CCCEEEEEec-cEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecC----CceEEEeccCCC
Confidence 2234488876 4567766665 45778987765544333322 456666664 5667777776 899999999999
Q ss_pred eeeEEEcCcCccceEEEEE--eCCCCEEEEEEcCCeEEEEeCCCC
Q 001343 575 TIKRTYAGFRKKSNGVVQF--DTTQNHFLAVGEDSQIKFWDMDNV 617 (1096)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1096)
.+...+.+|.. .|..+.+ .|++.+|++++.||.|++||++..
T Consensus 240 ~~~~~~~AH~~-RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 240 TPLTEFLAHEN-RVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ccceeeecchh-heeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 99999999988 6766653 456789999999999999999865
No 130
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=3.9e-22 Score=190.62 Aligned_cols=300 Identities=15% Similarity=0.227 Sum_probs=227.5
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~ 420 (1096)
.|.+.|+++.+.+...+|+.+|+.||.|.|||+++........+ +-+ ..|... ..--.+|+-.|..+.|-| |...
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~v~--~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCIVA--KQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeeecc--ccCCccceeeeeeeEEeeecCce
Confidence 48899999999997655899999999999999987542211000 000 011111 112467899999999999 6678
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCC-cEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeE
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK-LLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~-~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~ 498 (1096)
+.+++.|.+++|||.++-+.... + .-.+.|+.-+++|-.. .-++++|..|-.|++-| .+|..-+++.||.+.|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~---F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVD---F-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred eecccccceEEEeecccceeeEE---e-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 88999999999999998665442 2 2456788888888543 22678888889999999 99999999999999999
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCC-CeeeEEe--------------CCCCcEEEEEEcCCCCEEEEEeeccCCC
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYD--------------APGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~--------------~~~~~i~~l~~s~~~~~l~~~~~~~~~~ 563 (1096)
++.|+|..+ -.|++|+.||.|++||++.. .+...+. .|.+.+..++|+.++.++++++. +
T Consensus 193 aV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d 267 (397)
T KOG4283|consen 193 AVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----D 267 (397)
T ss_pred EEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC----c
Confidence 999999754 67899999999999999865 3333332 34557999999999999999998 9
Q ss_pred CeEEEEeCCCCeeeEEEcC---cCcc---ceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEE
Q 001343 564 SFLVEWNESEGTIKRTYAG---FRKK---SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~---~~~~---~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 637 (1096)
..+++|+..+|+....-.+ |+.. .+. +. +.+...++.--.++.+.++++-.+..+..+..|.. .+.|.++
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k--~i~c~~~ 343 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLK--RINCAAY 343 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccc--eeeEEee
Confidence 9999999988753221111 1110 111 22 33334455555678999999999999999998854 8999999
Q ss_pred eCCCCEEEEEECCCcEEEEEc
Q 001343 638 SKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 638 s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
-|+-+...++..|+.|..|-.
T Consensus 344 ~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 344 RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCchhhhhccccCCccccccc
Confidence 999999999999999999976
No 131
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.1e-22 Score=203.51 Aligned_cols=287 Identities=11% Similarity=0.212 Sum_probs=234.4
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC-EEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-YVG 422 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~ 422 (1096)
.+.|+||.|+|... +|.+|+.|++++||.+.......-+ .+.--..+|.+..|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lq-----------------S~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQ-----------------SIHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhe-----------------eeeeccCccceeeecCCCceEEE
Confidence 46899999999998 8999999999999998743322110 1222466899999999999 889
Q ss_pred EEECCCeEEEEEccCCCccccceeecccc-cCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~-~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~ 500 (1096)
+++.....+.||+.+++..+.. .+.++. ..+.....+++++ +|+..+..|.|.+-. .+++.+.+++ ..+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k~~-~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTKLK-PPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeecccccccccc-CCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 9999999999999998755422 344554 4667888999999 899999999999999 8899888887 56789999
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCC-cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC------
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE------ 573 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~------ 573 (1096)
+|+ .++..|++++.+|.|.+||++...+...+...+. .-++++.++++.++++|+. .|.|.|||..+
T Consensus 351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 996 4778999999999999999999988888876665 5578999999999999997 99999999653
Q ss_pred CeeeEEEcCcCccceEEEEEeCCCCEEEEEE--cCCeEEEEeCCCCeEEEEeecC-CCCCCccEEEEeCCCCEEEEEECC
Q 001343 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAE-GGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
.+++..+..-.. .|+.+.|+++...|+.++ .+..+++-++.+......+... ...+.|+|++|+|.+.++|.|..+
T Consensus 425 PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 456666665555 788999999999988877 5678999999877666555433 234578999999999999999999
Q ss_pred CcEEEEEcC
Q 001343 651 NGFKILANA 659 (1096)
Q Consensus 651 g~i~iwd~~ 659 (1096)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999873
No 132
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=2.5e-23 Score=212.61 Aligned_cols=273 Identities=11% Similarity=0.126 Sum_probs=213.9
Q ss_pred CCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCC
Q 001343 723 RSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSG 802 (1096)
Q Consensus 723 s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g 802 (1096)
+...+.+.||+. |-|+|||+...........+.... ....|+++...|||+.|++++.-.++.|||+.....
T Consensus 428 S~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~---rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp---- 499 (705)
T KOG0639|consen 428 SNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLN---RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP---- 499 (705)
T ss_pred cCCcceeEecCC-CeEEEeeccCCCCCCccccccccC---cccceeeeEecCCCceEEeccccceeeeeeccCCCc----
Confidence 444455667776 899999998543333333333333 567899999999999999999999999999854221
Q ss_pred ceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEe
Q 001343 803 KATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFH 881 (1096)
Q Consensus 803 ~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s 881 (1096)
.++..++. ..-...+++.|||.++.+++. ||.|.|||+.+..+++.|++|.+.+.||.++
T Consensus 500 -----------------rikaelts--sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 500 -----------------RIKAELTS--SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 560 (705)
T ss_pred -----------------chhhhcCC--cchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence 11112322 234567799999998877666 8999999999999999999999999999999
Q ss_pred cCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCC-CCCceEEEecCCcEEEEE-ecceEEEEEc
Q 001343 882 PQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTP-TGDTRVQFNADQVRMLVV-HETQLAIYDA 959 (1096)
Q Consensus 882 ~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~v~~v~fs~dg~~l~~~-~d~~i~iwd~ 959 (1096)
+ ||..|-+|+-|++|+-||+..+. .+..|.+ +.|.++-.+|.+.+|+++ ..+.+.|-..
T Consensus 561 ~-dGtklWTGGlDntvRcWDlregr------------------qlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 561 K-DGTKLWTGGLDNTVRCWDLREGR------------------QLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT 621 (705)
T ss_pred C-CCceeecCCCccceeehhhhhhh------------------hhhhhhhhhhheecccCCCccceeeecccCcEEEEec
Confidence 9 99999999999999999999887 3444444 589999999999999995 6778888877
Q ss_pred ccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecC
Q 001343 960 SKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHP 1039 (1096)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~ 1039 (1096)
...+. .++.- |.+-|.++.|++.|+++++.+.|..+..|...-|.-+.... .++.|.++ ..|.
T Consensus 622 skp~k-yqlhl---heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-----------E~SsVlsC--DIS~ 684 (705)
T KOG0639|consen 622 SKPEK-YQLHL---HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-----------ESSSVLSC--DISF 684 (705)
T ss_pred CCccc-eeecc---cccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-----------ccCcceee--eecc
Confidence 65542 23322 38999999999999999999999999999998887554433 35578864 4444
Q ss_pred CCCceEEEEeeCCcEEEEcc
Q 001343 1040 LEPNQFAIGLTDGSVKVMEP 1059 (1096)
Q Consensus 1040 ~d~~~l~s~~~dg~i~vW~v 1059 (1096)
|.++++||+.|....||+|
T Consensus 685 -ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 685 -DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -CceEEEecCCCcceEEEEE
Confidence 7899999999999888876
No 133
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=2.5e-22 Score=211.87 Aligned_cols=274 Identities=12% Similarity=0.157 Sum_probs=206.6
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~ 425 (1096)
.|..++|-|||..+++. .+..+.|||...|..+.+ +++|++.|.|++|+.||+.+|+|+
T Consensus 14 ci~d~afkPDGsqL~lA--Ag~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA--AGSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEe--cCCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 79999999999975543 467999999999988754 899999999999999999999999
Q ss_pred CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEEEEeeec
Q 001343 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHK 505 (1096)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 505 (1096)
.|..|.+|+-+-...++ ..|.+.|.|+.|+|-.. .|+||+-. ..-+|....+.+...+ ...++.+++| .
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~K~k-ss~R~~~CsW--t 141 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVSKHK-SSSRIICCSW--T 141 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHHhhh-hheeEEEeee--c
Confidence 99999999866433332 25999999999999988 78888743 4668884444333322 3445667777 5
Q ss_pred CCCcEEEEEECCCeEEEEEcCCCCeeeEEe---CCCCcEEEEEEcCCCC-----EEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLYSADGS-----RLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 506 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~~~-----~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
.||++++.|-.+|+|.+-+-. ++....+. +.+.+|.+++|+|... .+++... ..++..+.+. |+.+
T Consensus 142 nDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~Ls-G~~I 215 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQLS-GKQI 215 (1081)
T ss_pred CCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEec-ceee
Confidence 588999999999999988643 33333333 3556999999999643 3444433 4455555543 3333
Q ss_pred EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEE
Q 001343 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1096)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 657 (1096)
..-+.-.- ...|+.+.++|.+++.|+.|+.+.+|.. .|-.+.++....+ .|+.++..|+++.++.|+.||+|-.|+
T Consensus 216 gk~r~L~F-dP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~--WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 216 GKDRALNF-DPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDS--WIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred cccccCCC-CchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccce--eEEEEEEccCCceEEEEEccCeeehhh
Confidence 32222222 4556889999999999999999999985 5666776665555 899999999999999999999999998
Q ss_pred cCCC
Q 001343 658 NAIG 661 (1096)
Q Consensus 658 ~~~~ 661 (1096)
+...
T Consensus 292 l~fS 295 (1081)
T KOG1538|consen 292 LIFS 295 (1081)
T ss_pred hHHh
Confidence 7543
No 134
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=3.6e-22 Score=202.90 Aligned_cols=294 Identities=15% Similarity=0.222 Sum_probs=225.1
Q ss_pred CCCceEEEEEcCCCC-cEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCE
Q 001343 343 QGSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~-~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~ 420 (1096)
|...|+|++|+|... .++|+|...|.|-+||+.+.+.... .+ ..+..|..+|.++.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d-~v--------------~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD-GV--------------YLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccC-ce--------------EEeccCCccccceEecCCChhh
Confidence 788999999999976 7899999999999999964443322 11 13788999999999999 5568
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceEEEeeCCCCCeE
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVY 498 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~~~~~v~ 498 (1096)
+++.+.||+|++-|++++.. ..+..+......+..+.|+.+.. .++.+..=|.+.+|| ..+.....+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 88999999999999987642 22223444556778899998888 677788778999999 45556778888999999
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCCee----eEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC--
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-- 572 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~-- 572 (1096)
+++++|... .+|++++.|++.+|||++..... .....|...|.+..|||.+-.|++.+. |..|++||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceEEeecccc
Confidence 999999754 79999999999999999864433 344567779999999999888888876 9999999983
Q ss_pred --CCeeeEEEcCcCcc----ceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCC-EEE
Q 001343 573 --EGTIKRTYAGFRKK----SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN-LLA 645 (1096)
Q Consensus 573 --~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~ 645 (1096)
.-.+..++...... ...-..|.|+.+++++|..-..|-|+|-..++.+..+.......-..-..|+|-+. +++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~a 481 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAA 481 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceec
Confidence 33344444322211 12236799999999999998999999999999887765554332233458999877 444
Q ss_pred EEECCCcEEEEEcC
Q 001343 646 VTTADNGFKILANA 659 (1096)
Q Consensus 646 ~~~~dg~i~iwd~~ 659 (1096)
.++..|.|++|.-.
T Consensus 482 G~~s~Gki~vft~k 495 (498)
T KOG4328|consen 482 GGNSSGKIYVFTNK 495 (498)
T ss_pred cCCccceEEEEecC
Confidence 45567888888643
No 135
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.9e-22 Score=191.36 Aligned_cols=268 Identities=13% Similarity=0.213 Sum_probs=202.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceE
Q 001343 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1096)
Q Consensus 409 V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~ 487 (1096)
-.|+.|++.|.+||+|+.||.|.|||+.+...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+|| ..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976544 5889999999999999999 899999999999999 999999
Q ss_pred EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCC----cEEEEEEcCCCCEEEEEeeccCCC
Q 001343 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH----WCTTMLYSADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~i~~l~~s~~~~~l~~~~~~~~~~ 563 (1096)
+.++ ..++|+.+.|+|......+++- .+..-.+-++........-....+ .-.+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 8887 6889999999998765544443 333344445544222221111111 2233468899999999987 9
Q ss_pred CeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC-------eE--EEEeecCCCCCCccE
Q 001343 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-------NI--LTSTDAEGGLPNLPR 634 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~--~~~~~~~~~~~~v~~ 634 (1096)
|.+.++|..+.+++..++-.....|..+.++..|++|+.-+.|..|+.|++..- ++ .+.+..--+...-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 999999999999999887766447888999999999999999999999998631 11 112211111224468
Q ss_pred EEEeCCCCEEEEEEC-CCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeE
Q 001343 635 LRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 635 ~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
++|+.+|.+++.++. ...++||....| ..++.+.+...+.+ -.+.++|-...+
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~kgE~l----~DV~whp~rp~i 308 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTKGEEL----LDVNWHPVRPII 308 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCchhhe----eecccccceeee
Confidence 899999999888774 567999999888 77888887764422 134455544443
No 136
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=3.9e-22 Score=203.53 Aligned_cols=253 Identities=17% Similarity=0.232 Sum_probs=202.5
Q ss_pred cccCCCCEEEEEEcCC-CCEEEEEECCCeEEEEEccCCCcc-------ccceeecccccCEEEEEEecCCCcEEEEEEeC
Q 001343 402 FKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDL-------RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd-~~~l~s~~~dg~i~vwd~~~~~~~-------~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~ 473 (1096)
...|.+.|+.+.+-|. ...+|+++..+.|.|||...-... +.-..|.+|.+.-++++|++.... .|++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 3458999999999995 456677788899999998653221 222368899998899999998776 8999999
Q ss_pred CCcEEEEEc--CCc------eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcC--CCCeeeEEeCCCCcEEE
Q 001343 474 DKLIKVWEL--SGR------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD--TMGSRVDYDAPGHWCTT 543 (1096)
Q Consensus 474 d~~i~iwd~--~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~ 543 (1096)
|++|++||. .+. +...+.+|...|..++|++... .++.+++.|+.+.|||++ +.+.......|...+.+
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 999999992 222 3466889999999999998754 689999999999999999 55556677889999999
Q ss_pred EEEcCCCCE-EEEEeeccCCCCeEEEEeCCCC-eeeEEEcCcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCCCeE-
Q 001343 544 MLYSADGSR-LFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNI- 619 (1096)
Q Consensus 544 l~~s~~~~~-l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~- 619 (1096)
++|+|-+.+ ||+++. |++|.+||+++. +.+.++.+|.. .|..+.|+|.. ..|++++.|+.+.+||+..-..
T Consensus 278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 999996654 556665 999999999875 46788999988 89999999975 5677888999999999875211
Q ss_pred -----------EEEeecCCCCCCccEEEEeCCC-CEEEEEECCCcEEEEEcCCC
Q 001343 620 -----------LTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 620 -----------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~ 661 (1096)
--.+...+|...|..+.|+|+. ..|++++.|+.+.||.+...
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 1124444556689999999965 57788899999999998643
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=1.8e-20 Score=205.59 Aligned_cols=275 Identities=12% Similarity=0.099 Sum_probs=202.7
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE-EEEECCCeEEEEEccC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV-GVAFTKHLIQLYSYAG 437 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l-~s~~~dg~i~vwd~~~ 437 (1096)
++++++.|+.|.+||+.+++.+.. +..+ ..+.+++|+|+++.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 788999999999999998876542 3333 346789999999987 5667789999999998
Q ss_pred CCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC
Q 001343 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI 516 (1096)
Q Consensus 438 ~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 516 (1096)
++... .+..+. .+..++|+|+++. ++++++.|+.+++|| .+++.+..+.. ...+.+++|+| ++.++++++.
T Consensus 63 ~~~~~---~~~~~~-~~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~--dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGP-DPELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP--DGKIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCC-CccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC--CCCEEEEEec
Confidence 87654 243333 3578899999983 345556789999999 67777766653 33467888866 6678888887
Q ss_pred CC-eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc------cceE
Q 001343 517 DG-KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK------KSNG 589 (1096)
Q Consensus 517 dg-~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~------~~i~ 589 (1096)
++ .+.+||.++......... ...+..++|+++++.+++++. .++.|++||+.+++.+..+..+.. ....
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 567789877665444332 334678999999998865542 278999999999988776653211 1223
Q ss_pred EEEEeCCCCEEEEE-EcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEE-ECCCcEEEEEcCCCcccccc
Q 001343 590 VVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT-TADNGFKILANAIGLRSLRA 667 (1096)
Q Consensus 590 ~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~ 667 (1096)
.++|+|++++++++ +.++.+.+||..+++.+..+.. .+ .+.+++|+|+|.+|+++ +.++.|.+||+.++ +.+..
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~--~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~ 286 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV-GQ--RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKS 286 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe-CC--CcceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 57899999986554 5567899999998887765542 22 68899999999999886 46899999999887 44444
Q ss_pred cc
Q 001343 668 VE 669 (1096)
Q Consensus 668 ~~ 669 (1096)
+.
T Consensus 287 ~~ 288 (300)
T TIGR03866 287 IK 288 (300)
T ss_pred EE
Confidence 43
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.3e-21 Score=197.15 Aligned_cols=288 Identities=15% Similarity=0.193 Sum_probs=223.2
Q ss_pred cccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCc---eEEEeeCCCCCeEEEEeeecCCCc-EEEEEECCCeEEEEEc
Q 001343 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR---KLFNFEGHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLY 525 (1096)
Q Consensus 450 h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~ 525 (1096)
-.+.|+++.|+|... ++++|+.|++++||-.+|+ .+..+.-...||.+.+|.| +|. .+++++....++.||+
T Consensus 212 s~~~I~sv~FHp~~p--lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p--~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAP--LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP--NGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred CcCCceEEEecCCCc--eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecC--CCceEEEecccceEEEEeec
Confidence 346899999999999 9999999999999985544 5666666788999999988 555 8999999999999999
Q ss_pred CCCCeeeEEeCC---CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEE
Q 001343 526 DTMGSRVDYDAP---GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA 602 (1096)
Q Consensus 526 ~~~~~~~~~~~~---~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 602 (1096)
.+.+....-... ...+....+++++++|+..|. .|.|.+....+++.+.++.-.. .+..++|+.+++.|++
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~----~G~I~lLhakT~eli~s~KieG--~v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN----NGHIHLLHAKTKELITSFKIEG--VVSDFTFSSDSKELLA 361 (514)
T ss_pred cccccccccCCCCcccchhheeEecCCCCeEEEccc----CceEEeehhhhhhhhheeeecc--EEeeEEEecCCcEEEE
Confidence 877665432222 225778889999999999987 9999999999999998887543 7888999999999999
Q ss_pred EEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCc-----cccccccCCCccccc
Q 001343 603 VGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL-----RSLRAVENPPFEALR 677 (1096)
Q Consensus 603 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~ 677 (1096)
.+.+|.|++||++...++..+...+.. .-++++.++++.++|+|+..|.|.|||..+.. +.+..+.. ..
T Consensus 362 ~~~~GeV~v~nl~~~~~~~rf~D~G~v-~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN-----Lt 435 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLHRFVDDGSV-HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN-----LT 435 (514)
T ss_pred EcCCceEEEEecCCcceEEEEeecCcc-ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh-----hh
Confidence 999999999999999999988776643 33677788999999999999999999976542 22222222 34
Q ss_pred CcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEc
Q 001343 678 TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM 757 (1096)
Q Consensus 678 ~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 757 (1096)
..|+++.|++|++.++.+ +...+..+|+-.+.. ....-.+
T Consensus 436 t~Itsl~Fn~d~qiLAia-----------------------------------S~~~knalrLVHvPS-----~TVFsNf 475 (514)
T KOG2055|consen 436 TAITSLQFNHDAQILAIA-----------------------------------SRVKKNALRLVHVPS-----CTVFSNF 475 (514)
T ss_pred eeeeeeeeCcchhhhhhh-----------------------------------hhccccceEEEeccc-----eeeeccC
Confidence 557788888877766222 222345667666642 1122234
Q ss_pred CCCCCCcccEEEEEEecCCceEEEeecCCeEEEeec
Q 001343 758 PESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 793 (1096)
Q Consensus 758 ~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~ 793 (1096)
|.....-+.|+|++|||.+.+++.|...|.+.+|.+
T Consensus 476 P~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 476 PTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred CCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 433335568999999999999999999999999986
No 139
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.7e-23 Score=223.87 Aligned_cols=253 Identities=17% Similarity=0.338 Sum_probs=224.2
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~ 438 (1096)
+++.+..+..++|||... +..|...|.|+..-..++.+++|+.|..+-+|.+...
T Consensus 6 ~~m~~~~~t~Lr~~~~~~-------------------------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp 60 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTRE-------------------------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP 60 (825)
T ss_pred ccceeeeeeccccccchh-------------------------hhhhhhhhceeeeeccceeeccCCCceeeccccccCC
Confidence 345555566777787642 4458889999998778899999999999999998765
Q ss_pred CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC
Q 001343 439 NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID 517 (1096)
Q Consensus 439 ~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 517 (1096)
..+. .+.+|..+|.++.|+++.. +|++|+.+|+|++|| ..++.++++.||...+.++.|+|. +.+.++|+.|
T Consensus 61 ~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~--~~~~a~gStd 133 (825)
T KOG0267|consen 61 NAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPY--GEFFASGSTD 133 (825)
T ss_pred chhh---eeeccCCcceeeecCcchh--hhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccc--eEEecccccc
Confidence 5554 4889999999999999998 899999999999999 999999999999999999999884 5789999999
Q ss_pred CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCC
Q 001343 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597 (1096)
Q Consensus 518 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 597 (1096)
+.+.+||.+...+...+.+|...+..+.|+|+|++++.++. |..+++||...|+....|..|.. .+..+.|+|..
T Consensus 134 td~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e----d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e 208 (825)
T KOG0267|consen 134 TDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE----DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLE 208 (825)
T ss_pred ccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC----cceeeeecccccccccccccccc-cccccccCchh
Confidence 99999999999999999999999999999999999999986 89999999999999999999988 78889999998
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC
Q 001343 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
-.++.|+.|+++++||+++.+.+....... ..|.+.+|+|++..+++|...
T Consensus 209 ~Lla~Gs~d~tv~f~dletfe~I~s~~~~~--~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 209 VLLAPGSSDRTVRFWDLETFEVISSGKPET--DGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred hhhccCCCCceeeeeccceeEEeeccCCcc--CCceeeeecCCceeeecCchh
Confidence 889999999999999999988887776653 389999999999999888765
No 140
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=200.17 Aligned_cols=300 Identities=17% Similarity=0.241 Sum_probs=214.0
Q ss_pred EEeCC-CcEEEEE-cCCceEEEeeCC-CCCeEEEEeeecCCCcEEEEEE-CCCeEEEEEcCCCCeeeEEeCCCCcEEEEE
Q 001343 470 TCGDD-KLIKVWE-LSGRKLFNFEGH-EAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1096)
Q Consensus 470 s~s~d-~~i~iwd-~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 545 (1096)
+++.| .++.+|| .+|....++++. ...-.++... ++.+++++. ....|.+|.+...........-.+++.+++
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l---~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~ 88 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL---NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALA 88 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh---chhheeeecccCccccccccCchhhhhhhcccccceeeee
Confidence 34444 4599999 999999898875 2222222211 224565554 456789998877666655555667899999
Q ss_pred EcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC---------
Q 001343 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--------- 616 (1096)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------- 616 (1096)
-+|+|.+++.++. .+.|++|.+.+|.++..+..|-. .|+++.|+.||.+|++|+.||.|.+|.+..
T Consensus 89 s~n~G~~l~ag~i----~g~lYlWelssG~LL~v~~aHYQ-~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~ 163 (476)
T KOG0646|consen 89 SSNLGYFLLAGTI----SGNLYLWELSSGILLNVLSAHYQ-SITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHS 163 (476)
T ss_pred cCCCceEEEeecc----cCcEEEEEeccccHHHHHHhhcc-ceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCC
Confidence 9999999999876 89999999999999999999887 999999999999999999999999998642
Q ss_pred CeEEEEeecCCCCCCccEEEEeCC--CCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEe
Q 001343 617 VNILTSTDAEGGLPNLPRLRFSKE--GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (1096)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~ 694 (1096)
-+++..+..|.- +|+++...+. ..++++++.|.++++||+..+ ..+
T Consensus 164 ~~p~~~f~~Htl--sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LL----------------------------- 211 (476)
T KOG0646|consen 164 VKPLHIFSDHTL--SITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLL----------------------------- 211 (476)
T ss_pred ccceeeeccCcc--eeEEEEecCCCccceEEEecCCceEEEEEeccc-eee-----------------------------
Confidence 234455554443 6777766654 357777777777777777655 111
Q ss_pred cCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEec
Q 001343 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774 (1096)
Q Consensus 695 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 774 (1096)
..+. ....+.+++.+|
T Consensus 212 ----------------------------------------------------------lti~------fp~si~av~lDp 227 (476)
T KOG0646|consen 212 ----------------------------------------------------------LTIT------FPSSIKAVALDP 227 (476)
T ss_pred ----------------------------------------------------------EEEe------cCCcceeEEEcc
Confidence 1112 233666777777
Q ss_pred CCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCC--CeeeeeecCCCcEEEEec-C
Q 001343 775 SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEE--AVPCIALSKNDSYVMSAT-G 851 (1096)
Q Consensus 775 ~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~--~v~~l~~s~dg~~la~~~-d 851 (1096)
-+..+.+|+.+|.|.+.++........+- ..+..+. .+..+. .+.| |.+ .|+|++++-||.+|++|+ |
T Consensus 228 ae~~~yiGt~~G~I~~~~~~~~~~~~~~v-----~~k~~~~-~~t~~~-~~~G--h~~~~~ITcLais~DgtlLlSGd~d 298 (476)
T KOG0646|consen 228 AERVVYIGTEEGKIFQNLLFKLSGQSAGV-----NQKGRHE-ENTQIN-VLVG--HENESAITCLAISTDGTLLLSGDED 298 (476)
T ss_pred cccEEEecCCcceEEeeehhcCCcccccc-----ccccccc-ccceee-eecc--ccCCcceeEEEEecCccEEEeeCCC
Confidence 77777777777777766654322111100 0111111 122222 3555 766 999999999999999999 8
Q ss_pred CeEEEEEcccceEEEeecCCCCCeeEEEEec
Q 001343 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882 (1096)
Q Consensus 852 g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~ 882 (1096)
|+|+|||+.+.++++++..-.++|+-+.+.|
T Consensus 299 g~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 299 GKVCVWDIYSKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred CCEEEEecchHHHHHHHhhhccccceeEeec
Confidence 9999999999999999876778999999866
No 141
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=6.5e-21 Score=210.28 Aligned_cols=267 Identities=13% Similarity=0.185 Sum_probs=225.5
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC-CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 403 ~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
..|...-+.|+|.|+|++|++++.||.|++|+.... +... .+.-+...|.+++-. +. .|++|+.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~--s~--~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACY--SN--HFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeec--cc--ceEEeeccceEEEee
Confidence 458899999999999999999999999999998765 3333 233377788888764 44 799999999999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
.++..-..+....-++.+++++. +|.+++.|+.|-.|++-++........+.+|..+|.++.|+|++++|++.+.
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v~g--~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~-- 158 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAVSG--SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC-- 158 (933)
T ss_pred CCCCCccceeeeeeccceEEEEec--CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec--
Confidence 77766555666677899999954 7789999999999999999999999999999999999999999999999987
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcC-------ccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCcc
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFR-------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1096)
+|.|++||+.++.+..++.+-. ...+..++|+|++..+++.+.|+.|.+|+..+.+....+........+.
T Consensus 159 --dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 159 --DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS 236 (933)
T ss_pred --CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence 9999999999998887765432 2355668999999999999999999999999999999888776665699
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeE
Q 001343 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
++.|+|+|.+||+++.||.|.|||..+... | .....|.+++|.|++..+
T Consensus 237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-------~---~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 237 DLQWSPNGKYIAASTLDGQILVWNVDTHER-------H---EFKRAVCCEAWKPNANAI 285 (933)
T ss_pred EEEEcCCCcEEeeeccCCcEEEEecccchh-------c---cccceeEEEecCCCCCee
Confidence 999999999999999999999999976311 1 123457888898888776
No 142
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=3.3e-21 Score=201.89 Aligned_cols=278 Identities=14% Similarity=0.218 Sum_probs=213.2
Q ss_pred CCCCcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCE
Q 001343 331 DDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1096)
Q Consensus 331 ~~~~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (1096)
...|..+...+. |++.|.|+...|.|. +||+|+.||+|+||.+.+|.++.... -.+.|
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~--------------------~d~~I 444 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQ--------------------FDSEI 444 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEe--------------------eccee
Confidence 344556665555 999999999999999 79999999999999999999986411 24479
Q ss_pred EEEEEcCCCC--EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEE----eCCCcEEEEE-c
Q 001343 410 SRVAWSPDGN--YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC----GDDKLIKVWE-L 482 (1096)
Q Consensus 410 ~~l~~spd~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~----s~d~~i~iwd-~ 482 (1096)
.||+|+|.++ .||++-. ..+.|-+..-|..+.... ... .|+++ ..|+.+..|. .
T Consensus 445 ~~vaw~P~~~~~vLAvA~~-~~~~ivnp~~G~~~e~~~----------------t~e--ll~~~~~~~~p~~~~~~W~~~ 505 (733)
T KOG0650|consen 445 RSVAWNPLSDLCVLAVAVG-ECVLIVNPIFGDRLEVGP----------------TKE--LLASAPNESEPDAAVVTWSRA 505 (733)
T ss_pred EEEEecCCCCceeEEEEec-CceEEeCccccchhhhcc----------------hhh--hhhcCCCccCCcccceeechh
Confidence 9999999765 4555544 346666655443222100 001 12222 3466788897 3
Q ss_pred CC----ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC---CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 483 SG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 483 ~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
.. .-++..-.|...|..+.||. .|.||++...+ ..|.|.++.......-+....+.|.++.|+|...++++
T Consensus 506 ~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfV 583 (733)
T KOG0650|consen 506 SLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFV 583 (733)
T ss_pred hhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEE
Confidence 11 12344556889999999987 56799887654 56888988877666666666778999999999999998
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC-eEEEEeecCCCCCCccE
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPR 634 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~ 634 (1096)
++ ...|++||+..+..++.+..... .+..++++|.|..|+.|+.|+.++.||++-. ++.+.+..|.. .+++
T Consensus 584 aT-----q~~vRiYdL~kqelvKkL~tg~k-wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~--avr~ 655 (733)
T KOG0650|consen 584 AT-----QRSVRIYDLSKQELVKKLLTGSK-WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEK--AVRS 655 (733)
T ss_pred Ee-----ccceEEEehhHHHHHHHHhcCCe-eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhh--hhhh
Confidence 87 78999999999888877766555 7888999999999999999999999999864 56677777765 8999
Q ss_pred EEEeCCCCEEEEEECCCcEEEEEc
Q 001343 635 LRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 635 ~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
++|++.-.++++|+.||++.+|.-
T Consensus 656 Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 656 VAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred hhhccccceeeeecCCCcEEEEee
Confidence 999999999999999999999863
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=4.7e-21 Score=202.52 Aligned_cols=288 Identities=17% Similarity=0.206 Sum_probs=211.0
Q ss_pred EEEcC--CCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECC
Q 001343 350 MDFHP--SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1096)
Q Consensus 350 v~fsp--~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d 427 (1096)
+.|++ +-+.+||.+..||.|.++|......... ..+......|.+.|..+.|-|....|++++.|
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~e-------------e~~lk~~~aH~nAifDl~wapge~~lVsasGD 121 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLE-------------ERQLKKPLAHKNAIFDLKWAPGESLLVSASGD 121 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchh-------------hhhhcccccccceeEeeccCCCceeEEEccCC
Confidence 44443 3446899999999999999875432210 00111255699999999999977789999999
Q ss_pred CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCc--------------------
Q 001343 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGR-------------------- 485 (1096)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~-------------------- 485 (1096)
.++++||++++++...- .+.||.+.|.+++|.|++.. .|++|+.||.|.||| .++.
T Consensus 122 sT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred ceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 99999999998776532 47799999999999999887 899999999999999 3331
Q ss_pred ------eEEEeeCCCCCeEE----EEeeecCCCcEEEEEEC-CCeEEEEEcCCCCeeeE--------EeCC---CCcEEE
Q 001343 486 ------KLFNFEGHEAPVYS----ICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVD--------YDAP---GHWCTT 543 (1096)
Q Consensus 486 ------~~~~~~~~~~~v~~----~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~--------~~~~---~~~i~~ 543 (1096)
.+...+.+...|.+ +.| . |...|++++. |+.|++||++....... +..+ ...+.+
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~f-k--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLF-K--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN 276 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEE-e--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence 01112334444444 443 2 4468888887 99999999987654432 2222 226788
Q ss_pred EEEcCCCCEEEEEeeccCCCCeEEEEeCCCC--eeeEEEcCcCccceE-EEEEeCCCCEEEEEEcCCeEEEEeCCCCeE-
Q 001343 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNG-VVQFDTTQNHFLAVGEDSQIKFWDMDNVNI- 619 (1096)
Q Consensus 544 l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~- 619 (1096)
+.....|.+|++.+. |+.|++|++.+. .++..+.++....+. .-..+|++.++++|+.|...++|.+.+.+.
T Consensus 277 L~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 277 LILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred EEecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC
Confidence 888888999988877 999999999754 344555554432222 245689999999999999999999987543
Q ss_pred EEEeecCCCCCCccEEEEeC-CCCEEEEEECCCcEEEEEcCCC
Q 001343 620 LTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
...+.+|.- .|++++|.| .-.-++++++|..+++|++.++
T Consensus 353 ~~~l~Ght~--eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 353 PALLLGHTR--EVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhhhhCcce--EEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 334444443 899999988 3355677799999999999776
No 144
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=1.5e-20 Score=179.80 Aligned_cols=306 Identities=14% Similarity=0.185 Sum_probs=222.6
Q ss_pred eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCee----------e-----EEeCCCCcEEEEEEcCCCC-EEE
Q 001343 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR----------V-----DYDAPGHWCTTMLYSADGS-RLF 554 (1096)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----------~-----~~~~~~~~i~~l~~s~~~~-~l~ 554 (1096)
+.|.+.|+++.+.+. .|+++++|+.||.|.+||+++.... . ....|.-.|.++.|-|-.. .+.
T Consensus 40 r~HgGsvNsL~id~t-egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLT-EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred ccCCCccceeeeccc-cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 458889999998776 5799999999999999999865411 0 1123444789999988554 455
Q ss_pred EEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC---CCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCC
Q 001343 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1096)
+++. |.++++||..+.+....|.-.. .|..-+++|- .-++++|..+-.|++-|+.+|....++.+|.. .
T Consensus 119 ssSF----DhtlKVWDtnTlQ~a~~F~me~--~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~--~ 190 (397)
T KOG4283|consen 119 SSSF----DHTLKVWDTNTLQEAVDFKMEG--KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD--G 190 (397)
T ss_pred cccc----cceEEEeecccceeeEEeecCc--eeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC--c
Confidence 5555 9999999999998888877543 5777777773 34677788899999999999999999999876 8
Q ss_pred ccEEEEeCCC-CEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCc
Q 001343 632 LPRLRFSKEG-NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710 (1096)
Q Consensus 632 v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~ 710 (1096)
|.++.|+|.. -.|++|+.||.|++||+....-+...+..+....
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~----------------------------------- 235 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKR----------------------------------- 235 (397)
T ss_pred eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCcc-----------------------------------
Confidence 9999999955 5678999999999999965433444333332100
Q ss_pred CCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEE
Q 001343 711 PSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKL 790 (1096)
Q Consensus 711 ~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~v 790 (1096)
+.... +-+. |.+.+..++|+.++.++++.+.|..+++
T Consensus 236 --------------------------------------~p~~~--~n~a---h~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 236 --------------------------------------PPILK--TNTA---HYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred --------------------------------------Ccccc--cccc---ccceeeeeeecccchhhhhccCccceEE
Confidence 00000 1122 8899999999999999999999999999
Q ss_pred eeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeecC
Q 001343 791 WKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS 870 (1096)
Q Consensus 791 w~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~ 870 (1096)
|+...+..... +.|....+.-.+ ..-.|.+++ .+.++..-.++.+.++++-.|..++.+..
T Consensus 273 wn~~~G~ntl~--------------~~g~~~~n~~~~--~~~~~~~~~---s~vfv~~p~~~~lall~~~sgs~ir~l~~ 333 (397)
T KOG4283|consen 273 WNMESGRNTLR--------------EFGPIIHNQTTS--FAVHIQSMD---SDVFVLFPNDGSLALLNLLEGSFVRRLST 333 (397)
T ss_pred eecccCccccc--------------cccccccccccc--ceEEEeecc---cceEEEEecCCeEEEEEccCceEEEeeec
Confidence 99866433111 111111111111 011122111 22333444478999999999999999999
Q ss_pred CCCCeeEEEEecCCCcEEEEeeCCCeEEEEeec
Q 001343 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (1096)
Q Consensus 871 h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~ 903 (1096)
|...|.|.++-| +-+.+.+|..|+.|..|-..
T Consensus 334 h~k~i~c~~~~~-~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 334 HLKRINCAAYRP-DFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred ccceeeEEeecC-chhhhhccccCCcccccccc
Confidence 999999999999 88899999999999999763
No 145
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.1e-21 Score=212.05 Aligned_cols=247 Identities=13% Similarity=0.221 Sum_probs=197.2
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCEEEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVA 424 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~ 424 (1096)
.+..|+|+..-..+|||++..|.|.+||+.... +.+ +..+|..|+..|+++.|++ ...+|++|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~--rnk--------------~l~~f~EH~Rs~~~ldfh~tep~iliSG 152 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI--RNK--------------LLTVFNEHERSANKLDFHSTEPNILISG 152 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccc--cch--------------hhhHhhhhccceeeeeeccCCccEEEec
Confidence 466788886656689999999999999997621 110 1124888999999999998 46788999
Q ss_pred ECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceEEEeeCCCCCeEEEEe
Q 001343 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICP 502 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~~~~~v~~~~~ 502 (1096)
+.||+|++||+...+-.. ++.+....|.++.|+|...+ .++++.+.|.+++|| ...++...+.+|.++|.++.|
T Consensus 153 SQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 153 SQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred CCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 999999999999866554 56678899999999997655 899999999999999 566788889999999999999
Q ss_pred eecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC-CCcEEEEEEcCCCCEEE-EEeeccCCCCeEEEEeCCCC-eeeEE
Q 001343 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSRLF-SCGTSKDGDSFLVEWNESEG-TIKRT 579 (1096)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~-~~~~~~~~~~~i~iwd~~~~-~~~~~ 579 (1096)
+| ++.+|++||.|+.|+|||+...........+ ..++..+.|-|...+.+ +++. -.+..|++||++.. -+..+
T Consensus 229 hP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 229 HP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred cC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc--cccceEEEEeecccccccee
Confidence 98 6789999999999999999866554444333 44899999999877644 4432 23889999999865 45677
Q ss_pred EcCcCccceEEEEEeC-CCCEEEEEEcCCeEEEEeCCCC
Q 001343 580 YAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNV 617 (1096)
Q Consensus 580 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 617 (1096)
+..|.. .++.++|.. +...+.+++.||.|..-.+++.
T Consensus 305 ~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 305 FLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeccCc-cccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 888887 888899865 4467788889988876665554
No 146
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3.6e-21 Score=208.01 Aligned_cols=296 Identities=12% Similarity=0.143 Sum_probs=224.0
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVG 422 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~ 422 (1096)
+....++...++-.. +++++ .....||.+....... ++.+.. .. -..-...+..|.|.. +.++||
T Consensus 39 k~~~nAIs~nr~~~q-iv~AG-rs~lklyai~~~~~~~--~~~~~~-----k~-----kqn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQ-IVVAG-RSLLKLYAINPNDFSE--KCNHRF-----KT-----KQNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcce-eEEec-ccceeeEeeCcccCCc--ceeeec-----cc-----ccceeeehhhcccccchhhhhe
Confidence 345677778888776 44442 3466777665432211 111100 00 001122456678875 578999
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~ 501 (1096)
+++..|.|.+||+.....-+.+..+..|...++++.|++.... +|++||.||+|++|| ...+...++.+....|..|.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999873333333368899999999999998877 899999999999999 88888888998999999999
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCCC-eeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEE
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1096)
|+|.. +.+++++...|.+++||++... ....+..|.++|.++.|+|++.+|++||. |+.|+|||+.+.+.....
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCcccee
Confidence 99875 6899999999999999998644 45688999999999999999999999997 999999999877655555
Q ss_pred cCcCccceEEEEEeCCCCE-EEEEE--cCCeEEEEeCCCC-eEEEEeecCCCCCCccEEEEeC-CCCEEEEEECCCcEEE
Q 001343 581 AGFRKKSNGVVQFDTTQNH-FLAVG--EDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKI 655 (1096)
Q Consensus 581 ~~~~~~~i~~~~~~~~~~~-l~~~~--~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 655 (1096)
.-+...++..+.|-|...+ |++++ .|-.|+|||++.. -+..++..|.. .++.++|.. |...+.+++.||+|..
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~--~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD--SVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc--cccceeccCCCceeeEeecCccHHHH
Confidence 5455568999999997754 55554 6889999999764 34556666654 889999976 5678889999998776
Q ss_pred EEcCCC
Q 001343 656 LANAIG 661 (1096)
Q Consensus 656 wd~~~~ 661 (1096)
-...++
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 555444
No 147
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=6.4e-19 Score=193.19 Aligned_cols=274 Identities=12% Similarity=0.063 Sum_probs=200.1
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1096)
+|+.+. ++.+..+.+...+.+++|+|+|+.++++++.++.|++||..+++.+.. +..+.
T Consensus 15 ~~d~~t--~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~ 73 (300)
T TIGR03866 15 VIDTAT--LEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT-------------------LPSGP 73 (300)
T ss_pred EEECCC--CceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe-------------------ccCCC
Confidence 676654 445666665566889999999996557788899999999998876532 22222
Q ss_pred CCEEEEEEcCCCCEEEEE-ECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC-cEEEEE-cC
Q 001343 407 ISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-LIKVWE-LS 483 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~-~i~iwd-~~ 483 (1096)
.+..++|+|+++.++++ +.++.|++||+.+++.+. .+. +...+.+++|+|+++ .+++++.++ .+.+|| .+
T Consensus 74 -~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~---~~~-~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~d~~~ 146 (300)
T TIGR03866 74 -DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLA---EIP-VGVEPEGMAVSPDGK--IVVNTSETTNMAHFIDTKT 146 (300)
T ss_pred -CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe---Eee-CCCCcceEEECCCCC--EEEEEecCCCeEEEEeCCC
Confidence 35678999999988655 568999999999876554 232 234578899999999 777777665 567789 66
Q ss_pred CceEEEeeCCCCCeEEEEeeecCCCcEEE-EEECCCeEEEEEcCCCCeeeEEeCCC-------CcEEEEEEcCCCCEEEE
Q 001343 484 GRKLFNFEGHEAPVYSICPHHKENIQFIF-STAIDGKIKAWLYDTMGSRVDYDAPG-------HWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~i~~l~~s~~~~~l~~ 555 (1096)
++.+..... .....+++|++ ++++++ ++..++.|++||+++.+....+..+. .....++|+|+++++++
T Consensus 147 ~~~~~~~~~-~~~~~~~~~s~--dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~ 223 (300)
T TIGR03866 147 YEIVDNVLV-DQRPRFAEFTA--DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFV 223 (300)
T ss_pred CeEEEEEEc-CCCccEEEECC--CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEE
Confidence 666555432 23456778866 566775 44569999999999887655443221 12456889999998765
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEE-EcCCeEEEEeCCCCeEEEEeecCCCCCCccE
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1096)
+.. .++.+.+||..+++.+..+... . .+.+++|+|++.+|+++ +.+|.|.+||+.+++.+..+.... ..+.
T Consensus 224 ~~~---~~~~i~v~d~~~~~~~~~~~~~-~-~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~ 295 (300)
T TIGR03866 224 ALG---PANRVAVVDAKTYEVLDYLLVG-Q-RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR---LPWG 295 (300)
T ss_pred EcC---CCCeEEEEECCCCcEEEEEEeC-C-CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc---ccce
Confidence 432 1567999999998887665422 2 57789999999999886 468999999999999999887643 4588
Q ss_pred EEEeC
Q 001343 635 LRFSK 639 (1096)
Q Consensus 635 ~~~s~ 639 (1096)
++++|
T Consensus 296 ~~~~~ 300 (300)
T TIGR03866 296 VVVRP 300 (300)
T ss_pred eEeCC
Confidence 88765
No 148
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=4.5e-22 Score=213.04 Aligned_cols=232 Identities=11% Similarity=0.195 Sum_probs=211.1
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
|...|.|+..-..++ .+++|+.|..+-+|.+.....+.. |.+|..+|.|+.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcchhhhc
Confidence 888999999977777 799999999999999876554432 789999999999999999999
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~ 501 (1096)
+|+.+|+|++||++.++.++ +|.+|...+..+.|+|-+. +.++|+.|+.+++|| ....|.+.+.+|...|..+.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999988887 6889999999999999999 889999999999999 77889999999999999999
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEc
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1096)
|.| +|.++++|+.|.+++|||...++....+..|...+.++.|+|..-.++.|+. ++.+++||+++.+.+....
T Consensus 162 lsP--~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 162 LSP--DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSGK 235 (825)
T ss_pred ecC--CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeeccC
Confidence 977 7799999999999999999999999999999999999999999988999887 9999999999999888877
Q ss_pred CcCccceEEEEEeCCCCEEEEEEcC
Q 001343 582 GFRKKSNGVVQFDTTQNHFLAVGED 606 (1096)
Q Consensus 582 ~~~~~~i~~~~~~~~~~~l~~~~~d 606 (1096)
.... .+.+..|+|++..+++|...
T Consensus 236 ~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CccC-CceeeeecCCceeeecCchh
Confidence 7755 78899999999988887654
No 149
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=7.3e-20 Score=176.82 Aligned_cols=254 Identities=11% Similarity=0.150 Sum_probs=191.3
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC-CccccceeecccccCEEEEEEecC--CCcEEEEEEeCCCcEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~l~~h~~~v~~l~~s~d--~~~~~l~s~s~d~~i~ 478 (1096)
-.+|.+-|+|+.|.+.|+.+|+|+.|++|+|||.+.. .........+.|.+.|..+.|.+. |+ .+++|+.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 5679999999999999999999999999999996543 233444467899999999999764 55 999999999999
Q ss_pred EEE-cCC---------ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeE------Ee-------
Q 001343 479 VWE-LSG---------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD------YD------- 535 (1096)
Q Consensus 479 iwd-~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------~~------- 535 (1096)
||. ... ....++....+.|+.+.|.|..-|-.+++++.||++|||+.-....... +.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 998 211 1234566778899999999998899999999999999997654333221 11
Q ss_pred CCCCcEEEEEEcCC---CCEEEEEeec-cCCCCeEEEEeCCCC----eeeEEEcCcCccceEEEEEeCCC----CEEEEE
Q 001343 536 APGHWCTTMLYSAD---GSRLFSCGTS-KDGDSFLVEWNESEG----TIKRTYAGFRKKSNGVVQFDTTQ----NHFLAV 603 (1096)
Q Consensus 536 ~~~~~i~~l~~s~~---~~~l~~~~~~-~~~~~~i~iwd~~~~----~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~ 603 (1096)
.+.....|+.|+|. ..+|++++.+ ...-+.++||....+ ..+.++.+|.. +|..++|.|+- ..|+++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEe
Confidence 23336788999864 3467776642 112247778875432 34556777777 99999999963 468889
Q ss_pred EcCCeEEEEeCCCCe-----------------EEEEe-ecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 604 GEDSQIKFWDMDNVN-----------------ILTST-DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 604 ~~dg~i~iwd~~~~~-----------------~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
+.|| |+||++.... .+..+ ....|.+.|..+.|+-.|..|++.++||.|++|...
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999 9999987311 12222 233455599999999999999999999999999753
No 150
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=1.5e-19 Score=191.08 Aligned_cols=277 Identities=16% Similarity=0.201 Sum_probs=207.4
Q ss_pred cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeE
Q 001343 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1096)
.|..++|-|||..++.+. +..+.+||...|..++++++|.+ .|.+++|+.+|..+++|+.|..|.+|+-.-...
T Consensus 14 ci~d~afkPDGsqL~lAA-----g~rlliyD~ndG~llqtLKgHKD-tVycVAys~dGkrFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-----GSRLLVYDTSDGTLLQPLKGHKD-TVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred chheeEECCCCceEEEec-----CCEEEEEeCCCcccccccccccc-eEEEEEEccCCceeccCCCceeEEEecccccce
Confidence 789999999999988876 77899999999999999999998 999999999999999999999999998754333
Q ss_pred EEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCC
Q 001343 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPA 699 (1096)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~ 699 (1096)
++- +|...|.|+.|+|-...|++++-. ..-+|...... ...+ .....+.+++|..||++
T Consensus 88 LkY----SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~-----V~K~---kss~R~~~CsWtnDGqy-------- 146 (1081)
T KOG1538|consen 88 LKY----SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS-----VSKH---KSSSRIICCSWTNDGQY-------- 146 (1081)
T ss_pred eee----ccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-----HHhh---hhheeEEEeeecCCCcE--------
Confidence 321 233489999999999999988764 56788764431 1111 11233556666655555
Q ss_pred ceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCC---
Q 001343 700 NCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA--- 776 (1096)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~--- 776 (1096)
++.|-.+|+|.+-+-. ...-..+.-|| +..++|.+++|+|..
T Consensus 147 -----------------------------lalG~~nGTIsiRNk~----gEek~~I~Rpg--g~Nspiwsi~~~p~sg~G 191 (1081)
T KOG1538|consen 147 -----------------------------LALGMFNGTISIRNKN----GEEKVKIERPG--GSNSPIWSICWNPSSGEG 191 (1081)
T ss_pred -----------------------------EEEeccCceEEeecCC----CCcceEEeCCC--CCCCCceEEEecCCCCCC
Confidence 4677777888887654 22222333333 378899999999964
Q ss_pred --ceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCe
Q 001343 777 --VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGK 853 (1096)
Q Consensus 777 --~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~ 853 (1096)
..+.+...+.++.+|.++. +.+ |+.. +-.....|+.+-++|.++..|+ |+.
T Consensus 192 ~~di~aV~DW~qTLSFy~LsG-------~~I------------gk~r-------~L~FdP~CisYf~NGEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 192 RNDILAVADWGQTLSFYQLSG-------KQI------------GKDR-------ALNFDPCCISYFTNGEYILLGGSDKQ 245 (1081)
T ss_pred ccceEEEEeccceeEEEEecc-------eee------------cccc-------cCCCCchhheeccCCcEEEEccCCCc
Confidence 3355666677777776643 211 1100 1234567889999999998888 788
Q ss_pred EEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccce
Q 001343 854 ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1096)
Q Consensus 854 v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~ 906 (1096)
+++|. +.|-.+.++-.....|+.++..| ++++++.|+.||+|.-|++..+.
T Consensus 246 L~~fT-R~GvrLGTvg~~D~WIWtV~~~P-NsQ~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 246 LSLFT-RDGVRLGTVGEQDSWIWTVQAKP-NSQYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred eEEEe-ecCeEEeeccccceeEEEEEEcc-CCceEEEEEccCeeehhhhHHhH
Confidence 99998 47788888877778999999999 99999999999999999987655
No 151
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.2e-19 Score=175.43 Aligned_cols=253 Identities=13% Similarity=0.206 Sum_probs=192.2
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC--CCC
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGN 419 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~ 419 (1096)
+|.+-|.|+.|.+.|++ +|+|+.|++|+|||.......- .. ....+.|.+.|..|.|.+ -|+
T Consensus 11 ~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W-------~~--------Ts~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTW-------SC--------TSSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred CCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCce-------EE--------eeeEEecCCcEEEEEecCccccc
Confidence 48899999999999996 9999999999999975543221 11 112566999999999976 499
Q ss_pred EEEEEECCCeEEEEEccCC------CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEE---
Q 001343 420 YVGVAFTKHLIQLYSYAGS------NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN--- 489 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~------~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~--- 489 (1096)
.+|+++.|+++.||.-... .......++......|+++.|.|....+.+++++.||++|||+ .+--.+..
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 9999999999999976321 1122223566778899999999988888999999999999999 54332222
Q ss_pred ---ee-------CCCCCeEEEEeeecCC-CcEEEEEECC-----CeEEEEEcCCCCe----eeEEeCCCCcEEEEEEcCC
Q 001343 490 ---FE-------GHEAPVYSICPHHKEN-IQFIFSTAID-----GKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSAD 549 (1096)
Q Consensus 490 ---~~-------~~~~~v~~~~~~~~~~-~~~l~s~~~d-----g~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~ 549 (1096)
+. .+..+..|+.|+++.- ..+|++|+.+ +.+.||....... ..++..+..+|+.++|.|+
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 22 4667788999987543 2466666655 4889997765542 2356788889999999996
Q ss_pred C----CEEEEEeeccCCCCeEEEEeCCCC--------------------eeeEEEcCcCccceEEEEEeCCCCEEEEEEc
Q 001343 550 G----SRLFSCGTSKDGDSFLVEWNESEG--------------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (1096)
Q Consensus 550 ~----~~l~~~~~~~~~~~~i~iwd~~~~--------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 605 (1096)
- ..|++++. || |+||.++.. +.+..+.+|+. .+..+.|+-.|..|.+.|.
T Consensus 235 ~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 235 IGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred cCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCC
Confidence 3 35677765 77 999998731 23455677776 8899999999999999999
Q ss_pred CCeEEEEeCCC
Q 001343 606 DSQIKFWDMDN 616 (1096)
Q Consensus 606 dg~i~iwd~~~ 616 (1096)
||.|++|...-
T Consensus 309 DG~VRLWkany 319 (361)
T KOG2445|consen 309 DGCVRLWKANY 319 (361)
T ss_pred Cceeeehhhhh
Confidence 99999998653
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.8e-21 Score=217.13 Aligned_cols=295 Identities=15% Similarity=0.262 Sum_probs=226.2
Q ss_pred EEEEEcCCCCcEEEEEeC----------CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 348 ISMDFHPSHQTLLLVGSS----------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 348 ~~v~fsp~g~~llasg~~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
..++|||++..++|+|.. +.++.||.+.-...... ++...-..-....+.++|.+.
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~d--------------lk~~~s~~s~~rF~kL~W~~~ 75 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSD--------------LKPVGSLQSSNRFNKLAWGSY 75 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccc--------------ccccccccccccceeeeeccc
Confidence 467899999767887743 34555555432221100 000001113457889999998
Q ss_pred CCE----EEEEECCCeEEEEEccC---CCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEE
Q 001343 418 GNY----VGVAFTKHLIQLYSYAG---SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1096)
Q Consensus 418 ~~~----l~s~~~dg~i~vwd~~~---~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~ 489 (1096)
|.. ||.|..||.|.+||... +.....+.+...|.+.|..+.|++.+.. +|++|+.||.|.||| .+-+.-.+
T Consensus 76 g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~~ 154 (1049)
T KOG0307|consen 76 GSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPFT 154 (1049)
T ss_pred CCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCCC
Confidence 776 88889999999999875 4444444467789999999999998876 899999999999999 44333333
Q ss_pred e--eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCC--cEEEEEEcCCCCEEEEEeeccCCCCe
Q 001343 490 F--EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSF 565 (1096)
Q Consensus 490 ~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~~~~l~~~~~~~~~~~~ 565 (1096)
+ ....+.|.+++|+.. ..+.|++++.+|++.|||++..+.+..+..+.. .+..++|+|+...-+....+.++.-.
T Consensus 155 ~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pv 233 (1049)
T KOG0307|consen 155 PGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPV 233 (1049)
T ss_pred CCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCce
Confidence 3 224567999999754 457899999999999999999988887766655 58899999987644433335566889
Q ss_pred EEEEeCCCC-eeeEEEcCcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCC-C
Q 001343 566 LVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG-N 642 (1096)
Q Consensus 566 i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~ 642 (1096)
|.+||++.. ..++++.+|.. .+.++.|++.+ .++++++.|++|.+|+.++++.+..+...+. .+..+.|+|.. .
T Consensus 234 iqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n--W~fdv~w~pr~P~ 310 (1049)
T KOG0307|consen 234 IQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN--WCFDVQWCPRNPS 310 (1049)
T ss_pred eEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc--ceeeeeecCCCcc
Confidence 999998754 56778888887 78889999976 7889999999999999999999999987655 89999999955 5
Q ss_pred EEEEEECCCcEEEEEcCCC
Q 001343 643 LLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 643 ~l~~~~~dg~i~iwd~~~~ 661 (1096)
.+++++.||.|.||.+...
T Consensus 311 ~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 311 VMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred hhhhheeccceeeeeeecC
Confidence 8999999999999998766
No 153
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=3.1e-20 Score=188.50 Aligned_cols=252 Identities=13% Similarity=0.141 Sum_probs=193.2
Q ss_pred EEEEEEcC-------CCCEEEEEECCCeEEEEEccCCCccccc------------------eeecccccCEEEEEEecCC
Q 001343 409 VSRVAWSP-------DGNYVGVAFTKHLIQLYSYAGSNDLRQH------------------SQIDAHVGAVNDLAFAYPN 463 (1096)
Q Consensus 409 V~~l~~sp-------d~~~l~s~~~dg~i~vwd~~~~~~~~~~------------------~~l~~h~~~v~~l~~s~d~ 463 (1096)
-.|++|-. -|+|+|+|+.|..|.|||+.--..+... ....+|+..|..++|+..-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35666643 3789999999999999998632221111 1134799999999999887
Q ss_pred CcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEE
Q 001343 464 KLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCT 542 (1096)
Q Consensus 464 ~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 542 (1096)
+. +|+|||.|.+|++|| .+|++..++..|...|.++.|++. ...+|++|+.|+++.+.|.+.....-..-.-.+.|-
T Consensus 256 ~n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE 333 (463)
T KOG0270|consen 256 RN-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE 333 (463)
T ss_pred ce-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccceE
Confidence 76 899999999999999 999999999999999999999987 458999999999999999985333222222244688
Q ss_pred EEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC-eeeEEEcCcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCCCeEE
Q 001343 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNIL 620 (1096)
Q Consensus 543 ~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 620 (1096)
.++|.|.....+.++. .+|.++-+|++.. +++.+++.|.+ .|.++++++.- .++++++.|+.|++|++......
T Consensus 334 kv~w~~~se~~f~~~t---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVST---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred EEEecCCCceeEEEec---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 9999998876666554 2999999999875 89999999988 89999998754 57888999999999998764442
Q ss_pred EEeecCCCCCCccEEEEeCCC-CEEEEEECCCcEEEEEcCCCccccc
Q 001343 621 TSTDAEGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGLRSLR 666 (1096)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~ 666 (1096)
......-..+...|.++.|+- ..++.|+..+.+++||+.+.....+
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence 222211112245677788854 5778888888999999987744333
No 154
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=7.6e-20 Score=193.48 Aligned_cols=287 Identities=20% Similarity=0.212 Sum_probs=208.0
Q ss_pred EEEcC---CCCEEEEEECCCeEEEEEccCCCcc---ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC
Q 001343 412 VAWSP---DGNYVGVAFTKHLIQLYSYAGSNDL---RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1096)
Q Consensus 412 l~~sp---d~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~ 484 (1096)
..|++ ....||.+..||.|.++|......- +.+.....|...|.++.|.| |+. .|++++.|.++++|| ..+
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCceeeeeeeccc
Confidence 56665 3557899999999999998764322 22345678999999999999 554 899999999999999 777
Q ss_pred ceEEE--eeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCee---------------------------eEEe
Q 001343 485 RKLFN--FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---------------------------VDYD 535 (1096)
Q Consensus 485 ~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------------~~~~ 535 (1096)
+++.. +.||...|.++||.+. |...+++|+.||.|.|||++..... ....
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~-n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPT-NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred eeecceeecccccccchhhhccC-CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 77766 8999999999999987 4578999999999999998744310 0111
Q ss_pred CCCCcEEE---EEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEE--------EcCcCc--cceEEEEEeCCCCEEEE
Q 001343 536 APGHWCTT---MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT--------YAGFRK--KSNGVVQFDTTQNHFLA 602 (1096)
Q Consensus 536 ~~~~~i~~---l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--------~~~~~~--~~i~~~~~~~~~~~l~~ 602 (1096)
.+...|.+ +.+..|...|++++. .|+.|++||++....... +..+.. ..+.++..+..|.++++
T Consensus 212 A~s~ti~ssvTvv~fkDe~tlaSaga---~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A 288 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDESTLASAGA---ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA 288 (720)
T ss_pred cccCceeeeeEEEEEeccceeeeccC---CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE
Confidence 22334555 666689999998875 499999999986543322 222211 13455677777899998
Q ss_pred EEcCCeEEEEeCCCCe--EEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcc
Q 001343 603 VGEDSQIKFWDMDNVN--ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPI 680 (1096)
Q Consensus 603 ~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 680 (1096)
.+.|+.|++|++.+.. ++..+.++-....-..-..+|++.++++|+.|....+|.+.+.......+.+|..+ |
T Consensus 289 sCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~e-----V 363 (720)
T KOG0321|consen 289 SCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTRE-----V 363 (720)
T ss_pred EecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceE-----E
Confidence 8889999999997643 33333332221112233568999999999999999999998887777777777654 5
Q ss_pred eeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeee
Q 001343 681 ESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (1096)
Q Consensus 681 ~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~ 745 (1096)
..+.|.|. +.. -++++++|.++++|++..
T Consensus 364 t~V~w~pS-----------------------------------~~t-~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 364 TTVRWLPS-----------------------------------ATT-PVATCSDDFRVKIWRLSN 392 (720)
T ss_pred EEEeeccc-----------------------------------cCC-CceeeccCcceEEEeccC
Confidence 56666543 222 245668999999999864
No 155
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=3.1e-19 Score=179.23 Aligned_cols=303 Identities=16% Similarity=0.221 Sum_probs=216.6
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
+...+|..+.|.+++...+|||+.|..|+||.+..++.-... .++ . -...+..|...|+++.|+|+|..|
T Consensus 11 H~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-~~V--------~-y~s~Ls~H~~aVN~vRf~p~gelL 80 (434)
T KOG1009|consen 11 HDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-MKV--------E-YLSSLSRHTRAVNVVRFSPDGELL 80 (434)
T ss_pred cCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-eeE--------E-EeecccCCcceeEEEEEcCCcCee
Confidence 445789999999998756999999999999999876543210 010 0 123588999999999999999999
Q ss_pred EEEECCCeEEEEEcc--------C-----CCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceE
Q 001343 422 GVAFTKHLIQLYSYA--------G-----SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~--------~-----~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~ 487 (1096)
|+|+.+|.|.+|... + .+.....+.+.+|...|..++|+|++. ++++++-|.++++|| ..|+.+
T Consensus 81 ASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~ 158 (434)
T KOG1009|consen 81 ASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLL 158 (434)
T ss_pred eecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeE
Confidence 999999999999866 2 111223346789999999999999999 899999999999999 999999
Q ss_pred EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe-------------------CCCC----cEEEE
Q 001343 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------------------APGH----WCTTM 544 (1096)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------~~~~----~i~~l 544 (1096)
..+..|...+..++|.| -++++++-+.|...+.+++...+...... .|.. -...+
T Consensus 159 ~~~~dh~~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl 236 (434)
T KOG1009|consen 159 AILDDHEHYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL 236 (434)
T ss_pred eeccccccccceeecch--hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence 99999999999999977 44899999988877776655433222110 1111 24568
Q ss_pred EEcCCCCEEEEEeeccCC-----CCeEEEEeCCC-CeeeEEEcCcCccceEEEEEeC------------------CCCEE
Q 001343 545 LYSADGSRLFSCGTSKDG-----DSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDT------------------TQNHF 600 (1096)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~-----~~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~------------------~~~~l 600 (1096)
+|+|+|.++++...--.- -+..++++-.. .++...+.+... ....+.++| .+-.+
T Consensus 237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf 315 (434)
T KOG1009|consen 237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVF 315 (434)
T ss_pred ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEE
Confidence 899999999875321110 12234444322 123333333333 333333332 22234
Q ss_pred EEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 601 LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 601 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+.++ ...|++||.++..++.....- |...+++++|++||..++..+.||...+..++..
T Consensus 316 aiAt-~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 316 AIAT-KNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred EEee-cceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 4444 458999999998888776543 2448999999999999999999998877766544
No 156
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2.5e-19 Score=187.99 Aligned_cols=319 Identities=10% Similarity=0.228 Sum_probs=236.0
Q ss_pred eeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCC--CEEEEEECCCcE
Q 001343 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG--NLLAVTTADNGF 653 (1096)
Q Consensus 576 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i 653 (1096)
+-..+.+|.+ .+.++...|.|.+|++|+.||+|+||.+.+|.++.++...+ .|.+++|+|.+ ..||++.... +
T Consensus 392 ~~lvyrGHtg-~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~~-~ 466 (733)
T KOG0650|consen 392 CALVYRGHTG-LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGEC-V 466 (733)
T ss_pred eeeeEeccCC-eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecCc-e
Confidence 3456788888 89999999999999999999999999999999999998765 69999999965 3455554443 6
Q ss_pred EEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccc--
Q 001343 654 KILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTV-- 731 (1096)
Q Consensus 654 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s-- 731 (1096)
.|.+..-|.+... +...+ .|++
T Consensus 467 ~ivnp~~G~~~e~---~~t~e-----------------------------------------------------ll~~~~ 490 (733)
T KOG0650|consen 467 LIVNPIFGDRLEV---GPTKE-----------------------------------------------------LLASAP 490 (733)
T ss_pred EEeCccccchhhh---cchhh-----------------------------------------------------hhhcCC
Confidence 6655433311110 00000 0011
Q ss_pred --cCCCCCccceeeeeeec--CCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecC---CeEEEeeccCCccCCCCce
Q 001343 732 --DDVTDKPKPWQLAEIVD--SGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN---GVQKLWKWHRNEQNPSGKA 804 (1096)
Q Consensus 732 --~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d---g~v~vw~~~~~~~~~~g~~ 804 (1096)
...++.+..|.-..... .+-|..+. |...|+.+.|+..|.+|++...+ ..|.|+++.....
T Consensus 491 ~~~~p~~~~~~W~~~~~~e~~~~v~~~I~------~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s------ 558 (733)
T KOG0650|consen 491 NESEPDAAVVTWSRASLDELEKGVCIVIK------HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS------ 558 (733)
T ss_pred CccCCcccceeechhhhhhhccceEEEEe------cCCccceeeeecCCceEEEeccCCCcceEEEEecccccc------
Confidence 12235666776542111 22244444 88899999999999999887663 5677777643211
Q ss_pred eeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeecCCCCCeeEEEEecCC
Q 001343 805 TASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQD 884 (1096)
Q Consensus 805 ~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d 884 (1096)
. ..|.- ..+.|.++.|.|..-+|++++...|+|||+....+++.+......|.+++++| .
T Consensus 559 -------------Q----~PF~k--skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~ 618 (733)
T KOG0650|consen 559 -------------Q----SPFRK--SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-N 618 (733)
T ss_pred -------------c----Cchhh--cCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-C
Confidence 1 12221 46778999999999999999999999999988888888888888999999999 8
Q ss_pred CcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcc---
Q 001343 885 NNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDAS--- 960 (1096)
Q Consensus 885 ~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~--- 960 (1096)
|.-|+.|+.|+.+..+|+.-+. ++.+.+.-|.. .+++|+|++.-.++++ +.|+++.|+.-.
T Consensus 619 GDnli~gs~d~k~~WfDldlss--------------kPyk~lr~H~~-avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~ 683 (733)
T KOG0650|consen 619 GDNLILGSYDKKMCWFDLDLSS--------------KPYKTLRLHEK-AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN 683 (733)
T ss_pred CCeEEEecCCCeeEEEEcccCc--------------chhHHhhhhhh-hhhhhhhccccceeeeecCCCcEEEEeeeeeh
Confidence 9999999999999999998654 36677777776 9999999999999999 567999988542
Q ss_pred ----cc--eeccccccCCC-CCCCceEEEEeeCCcEEEEEecCCcEEEE
Q 001343 961 ----KM--ERIRQWTPQDA-LSAPISCAVYSCNSQLVFATFCDGNIGVF 1002 (1096)
Q Consensus 961 ----~~--~~~~~~~~~~~-~~~~i~~l~~s~dg~~la~~~~dg~i~vw 1002 (1096)
+. -.++.+.+|.. -...|..+.|.|..-+|++++.||+|++|
T Consensus 684 Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 684 DLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 11 12344444320 02458889999999999999999999998
No 157
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.3e-20 Score=193.11 Aligned_cols=337 Identities=17% Similarity=0.232 Sum_probs=256.4
Q ss_pred CCCCCCCccccccCCCCCCCCceeecCCccHHHHHhhcCCCCCCCceeecCCCceeeecCCCCcceEEeec-CCCceEEE
Q 001343 272 SIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLH-QGSTVISM 350 (1096)
Q Consensus 272 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~-h~~~V~~v 350 (1096)
+.+.+......-.+.|+.+++..+.+.-...+..+.+++. ...|. |.+.|..|
T Consensus 95 ~~~~~~w~~~~~l~~Re~gss~~f~~~~~~s~~~vqr~~l--------------------------~~kL~~H~GcVntV 148 (559)
T KOG1334|consen 95 ALPRSVWQSGTALHQRELGSSSRFVYEACGSRLFVQRLRL--------------------------QKKLNKHKGCVNTV 148 (559)
T ss_pred ccCccccchhhHHHhhhcCchhHHHHHhhhhHHHHHHhhh--------------------------hhcccCCCCcccee
Confidence 3333333333334455666667777777777777666665 33444 99999999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC--CCCEEEEEECCC
Q 001343 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGNYVGVAFTKH 428 (1096)
Q Consensus 351 ~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~l~s~~~dg 428 (1096)
.|+..|. .|++|+.|..|.+||+.++..... ...||...|..-.|-| +.+.+++++.||
T Consensus 149 ~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg 209 (559)
T KOG1334|consen 149 HFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFSGDRTIVTSSRDG 209 (559)
T ss_pred eecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCCCCcCceeccccC
Confidence 9999999 799999999999999999887643 3578999999999988 467899999999
Q ss_pred eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe---eCCCC---CeEEEE
Q 001343 429 LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF---EGHEA---PVYSIC 501 (1096)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~---~~~~~---~v~~~~ 501 (1096)
.|++=.+...........+..|.++|.-++.-|+... .|.+++.|+.+.-.| ..+.+...+ +.+.. ....++
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred ceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence 9999887655555444457789999999999999887 799999999999999 555443322 23333 467888
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCCCee------eEEe------CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEE
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSR------VDYD------APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~------~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iw 569 (1096)
.+|.. ...+++|+.|..+++||.+..... ..+. ...-.|++++|+.++.-+++... +-.|+++
T Consensus 289 ~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn----De~IYLF 363 (559)
T KOG1334|consen 289 VDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN----DEDIYLF 363 (559)
T ss_pred cCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec----ccceEEe
Confidence 88764 458999999999999998753332 1111 12237999999988777776665 8889998
Q ss_pred eCCC--C----------eeeE-EEcCcCcc-ceEEE-EEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccE
Q 001343 570 NESE--G----------TIKR-TYAGFRKK-SNGVV-QFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1096)
Q Consensus 570 d~~~--~----------~~~~-~~~~~~~~-~i~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1096)
.-.. | ..+. .++||.+. .|..+ .|.|...++++|++-|.|.||+-.+++.+..+.+..+ -|+|
T Consensus 364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~--VVNC 441 (559)
T KOG1334|consen 364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH--VVNC 441 (559)
T ss_pred ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc--eEec
Confidence 5432 2 2233 37888763 34444 4678889999999999999999999999999988877 8999
Q ss_pred EEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 635 LRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 635 ~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+.-+|--..||+.+-|..|+||...+.
T Consensus 442 LEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 442 LEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred cCCCCCCchhhccCCccceeeecCCcc
Confidence 999999999999999999999987443
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=4.4e-19 Score=173.02 Aligned_cols=289 Identities=16% Similarity=0.255 Sum_probs=211.0
Q ss_pred CCCceEEEEEcC----CCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC-
Q 001343 343 QGSTVISMDFHP----SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD- 417 (1096)
Q Consensus 343 h~~~V~~v~fsp----~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 417 (1096)
|+.+|..++|++ +....+|+.+ ...+.||+.....-+.. ++...-..|......++|+-|
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~--------------lq~y~D~d~~Esfytcsw~yd~ 101 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRL--------------LQSYADEDHDESFYTCSWSYDS 101 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceee--------------eeeccCCCCCcceEEEEEEecC
Confidence 889999999995 2233666654 56888888764332110 011112247778888999875
Q ss_pred ---CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe---
Q 001343 418 ---GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF--- 490 (1096)
Q Consensus 418 ---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~--- 490 (1096)
.-+||.|+.-|.|+|.|+.++++.+ .+.+|...|+.+.|.|+..+ +++++|.|.+|++|+ .++.++..|
T Consensus 102 ~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 102 NTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred CCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEeccc
Confidence 3478999999999999999988877 57899999999999999877 899999999999999 889998876
Q ss_pred eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeE----------------------------EeCCCCcEE
Q 001343 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD----------------------------YDAPGHWCT 542 (1096)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------------------------~~~~~~~i~ 542 (1096)
.||.+.|.++.|+. +|.+|++++.|.+|++|++...+.... ...|...|.
T Consensus 178 egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 67999999999977 567999999999999999884322110 011222233
Q ss_pred EEEEcCCCCEEEEEeeccCCCCeEEEEeCC-CCe-------------eeEEEcCcCccceEE--EEEeCCCCEEEEEEcC
Q 001343 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGT-------------IKRTYAGFRKKSNGV--VQFDTTQNHFLAVGED 606 (1096)
Q Consensus 543 ~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~-~~~-------------~~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~d 606 (1096)
|+.|- |+++++-+. ++.|..|... -++ ....+..... .+.- .+|+|-++.|+.|...
T Consensus 256 Cvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfirf~~d~~~~~la~gnq~ 328 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIRFAFDPWQKMLALGNQS 328 (385)
T ss_pred HHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEEEeecHHHHHHhhccCC
Confidence 33332 567777665 8899999872 111 1222332222 3333 3456667899999999
Q ss_pred CeEEEEeCCCCeE--EEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 607 SQIKFWDMDNVNI--LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 607 g~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
|.|++||++..++ ..++..+.....|...+|+.||..|+...+|++|.-||..
T Consensus 329 g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 329 GKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999998665 2334444445589999999999999999999999999853
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=2e-16 Score=184.17 Aligned_cols=368 Identities=25% Similarity=0.419 Sum_probs=271.1
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCC-eeecccceeecccccCccccccccccCC-CCEEEEEE-cC
Q 001343 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD-RLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAW-SP 416 (1096)
Q Consensus 340 ~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~-sp 416 (1096)
...|...|.++.|.+.+. .++.++.|+.+.+|+...+. .... +.++. ..+..+.+ ++
T Consensus 61 ~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 120 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSSP 120 (466)
T ss_pred eeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEECC
Confidence 345899999999999999 68888899999999998876 3321 33322 46777777 88
Q ss_pred CCC-EEEEEEC-CCeEEEEEccC-CCccccceeecccccCEEEEEEecCCCcEEEEEEeC-CCcEEEEE-cCCceEEEee
Q 001343 417 DGN-YVGVAFT-KHLIQLYSYAG-SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWE-LSGRKLFNFE 491 (1096)
Q Consensus 417 d~~-~l~s~~~-dg~i~vwd~~~-~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~-d~~i~iwd-~~~~~~~~~~ 491 (1096)
++. +++..+. |+.+.+|+... ..... .+..|...|..++|+|++. .+++++. |+.+++|+ ..+..+..+.
T Consensus 121 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (466)
T COG2319 121 DGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTLA 195 (466)
T ss_pred CcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEeec
Confidence 888 5555444 89999999987 43333 5778999999999999999 7888885 99999999 7788899999
Q ss_pred CCCCCeEEEEeeecCCCc-EEEEEECCCeEEEEEcCCCCeee-EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEE
Q 001343 492 GHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1096)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iw 569 (1096)
+|...|.+++|.+ ++. .+++++.|+.|++||...+.... .+..|.... ...|++++..+++++. ++.+++|
T Consensus 196 ~~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~~ 268 (466)
T COG2319 196 GHTDPVSSLAFSP--DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRLW 268 (466)
T ss_pred cCCCceEEEEEcC--CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEEe
Confidence 9999999999985 445 55555999999999888666666 566666664 4489999988887776 9999999
Q ss_pred eCCCCee-eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEee--cCCCCCCccEEEEeCCCCEEEE
Q 001343 570 NESEGTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD--AEGGLPNLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 570 d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~ 646 (1096)
+...... ...+.+|.. .+.++.|.|++..+++++.|+.+.+|+........... .+.. .+..+.|.+++..++.
T Consensus 269 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 345 (466)
T COG2319 269 DLRSSSSLLRTLSGHSS-SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSFSPDGSLLVS 345 (466)
T ss_pred eecCCCcEEEEEecCCc-cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC--ceEEEEECCCCCEEEE
Confidence 9987664 444455544 88889999988888888888899999998887766665 4433 6888888433355655
Q ss_pred E-ECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCC
Q 001343 647 T-TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM 725 (1096)
Q Consensus 647 ~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d 725 (1096)
+ ..|+.+.+|+..... ......... .+..+.+.+ ....
T Consensus 346 ~~~~d~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~-~~~~--------------------------------- 384 (466)
T COG2319 346 GGSDDGTIRLWDLRTGK-PLKTLEGHS------NVLSVSFSP-DGRV--------------------------------- 384 (466)
T ss_pred eecCCCcEEeeecCCCc-eeEEecCCc------eEEEEEECC-CCCE---------------------------------
Confidence 5 678899999987763 111111110 033444443 2111
Q ss_pred CCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeecc
Q 001343 726 DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWH 794 (1096)
Q Consensus 726 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~ 794 (1096)
...+..++.+.+|+... ..... .... +...+....+++++..++.++.++.+++|+..
T Consensus 385 ---~~~~~~~~~~~~~~~~~----~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 385 ---VSSGSTDGTVRLWDLST----GSLLR-NLDG---HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred ---EEEecCCCceEEEeccc----Ceeee-eccC---CCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence 11246678999999872 33322 2211 11789999999999988888888999999863
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.3e-18 Score=178.20 Aligned_cols=286 Identities=12% Similarity=0.109 Sum_probs=214.1
Q ss_pred ceeeecCCCCcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccc
Q 001343 325 HQTWSLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (1096)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1096)
..+|++.+........-. -...|..+.|+......+|+-+.|..|++|.-. |+ ..+ +.+ . ..+.
T Consensus 14 ~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~-g~-~~~--Vp~----------~-~k~~ 78 (673)
T KOG4378|consen 14 TKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKD-GK-TPE--VPR----------V-RKLT 78 (673)
T ss_pred eEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEeccc-CC-CCc--cce----------e-eccc
Confidence 348888776654443322 233499999998875234444567889999743 33 110 000 0 0122
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c
Q 001343 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~ 482 (1096)
+. .-.|++......|+++|+..++|+|||+....+.+ .+.+|...|+++.++..+. +|++++..|.|.|.. .
T Consensus 79 gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr---~lkdh~stvt~v~YN~~De--yiAsvs~gGdiiih~~~ 151 (673)
T KOG4378|consen 79 GD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR---FLKDHQSTVTYVDYNNTDE--YIASVSDGGDIIIHGTK 151 (673)
T ss_pred cc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh---hccCCcceeEEEEecCCcc--eeEEeccCCcEEEEecc
Confidence 22 33455555555899999999999999999644444 5889999999999999888 899999999999999 7
Q ss_pred CCceEEEeeCCCC-CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE-eCCCCcEEEEEEcCCCC-EEEEEeec
Q 001343 483 SGRKLFNFEGHEA-PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGS-RLFSCGTS 559 (1096)
Q Consensus 483 ~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~-~l~~~~~~ 559 (1096)
++.....|....+ .|.-+.+++.. ..+|.+++.+|.|.+||+........+ ..|..+...++|+|... .+++.+.
T Consensus 152 t~~~tt~f~~~sgqsvRll~ys~sk-r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~- 229 (673)
T KOG4378|consen 152 TKQKTTTFTIDSGQSVRLLRYSPSK-RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY- 229 (673)
T ss_pred cCccccceecCCCCeEEEeeccccc-ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecc-
Confidence 7777667764434 45578888764 357888999999999999987777654 46777899999999665 5566776
Q ss_pred cCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC-CeEEEEeecCCCCCCccEEEEe
Q 001343 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
|..|++||....+....+.... +...++|+++|.+|++|...|.|+.||++. ..++..+..|.. .|++++|-
T Consensus 230 ---Dkki~~yD~~s~~s~~~l~y~~--Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~--sVt~vafq 302 (673)
T KOG4378|consen 230 ---DKKINIYDIRSQASTDRLTYSH--PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA--SVTRVAFQ 302 (673)
T ss_pred ---cceEEEeecccccccceeeecC--CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc--ceeEEEee
Confidence 9999999999887777766543 688899999999999999999999999986 567788877765 79999998
Q ss_pred CCC
Q 001343 639 KEG 641 (1096)
Q Consensus 639 ~~~ 641 (1096)
|..
T Consensus 303 ~s~ 305 (673)
T KOG4378|consen 303 PSP 305 (673)
T ss_pred ecc
Confidence 765
No 161
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=2.6e-18 Score=175.14 Aligned_cols=305 Identities=13% Similarity=0.108 Sum_probs=221.0
Q ss_pred EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCC----eeeEEeCCCCcEEEEEEcCCC-CEEEEEeeccC
Q 001343 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG----SRVDYDAPGHWCTTMLYSADG-SRLFSCGTSKD 561 (1096)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~~~~ 561 (1096)
....+-+..+|++++|+|..+..++++|+.-|.|-+||+.+.+ ....+..|..+|.++.|+|.. ..+++.+.
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy--- 255 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY--- 255 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc---
Confidence 3445668889999999999887899999999999999996333 345778888999999999955 46666665
Q ss_pred CCCeEEEEeCCCCeeeEEEcCcCc-cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeE-EEEeecCCCCCCccEEEEeC
Q 001343 562 GDSFLVEWNESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI-LTSTDAEGGLPNLPRLRFSK 639 (1096)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~ 639 (1096)
||.|++-|++++.....+..... ..+..+.|+.+...++.+..=|.+.+||++++.. ...+..|.. .|..++++|
T Consensus 256 -DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k--KI~sv~~NP 332 (498)
T KOG4328|consen 256 -DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK--KITSVALNP 332 (498)
T ss_pred -CceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc--ccceeecCC
Confidence 99999999987654444433222 2566678888888888888878999999997654 566666655 899999999
Q ss_pred -CCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCC
Q 001343 640 -EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718 (1096)
Q Consensus 640 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~ 718 (1096)
...+|++++.|++.+|||+..-. +...
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~-------~K~s--------------------------------------------- 360 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLR-------GKAS--------------------------------------------- 360 (498)
T ss_pred CCchheeecccCcceeeeehhhhc-------CCCC---------------------------------------------
Confidence 56789999999999999985431 1000
Q ss_pred CCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCcc
Q 001343 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ 798 (1096)
Q Consensus 719 ~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~ 798 (1096)
-.+..++ |...|.+..|||++..|++.+.|..|+||+..
T Consensus 361 -------------------p~lst~~------------------HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss---- 399 (498)
T KOG4328|consen 361 -------------------PFLSTLP------------------HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS---- 399 (498)
T ss_pred -------------------cceeccc------------------ccceeeeeEEcCCCCceEeeccCCceEEeecc----
Confidence 0011111 88899999999998889999999999999962
Q ss_pred CCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCC-Cee
Q 001343 799 NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPP-AST 876 (1096)
Q Consensus 799 ~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~-~i~ 876 (1096)
.+.-|+...+....+...| .--.....+|.||..++++|. -..|-|+|-..++.+..+..... .|.
T Consensus 400 ----------~~sa~~~p~~~I~Hn~~t~--RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~ 467 (498)
T KOG4328|consen 400 ----------CISAKDEPLGTIPHNNRTG--RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIP 467 (498)
T ss_pred ----------cccccCCccceeeccCccc--ccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccc
Confidence 1222333333322222211 111233468999999999998 47799999988888888754443 555
Q ss_pred EE-EEecCCCcEEEEe-eCCCeEEEEeec
Q 001343 877 FL-AFHPQDNNIIAIG-TEDSTIHIYNVR 903 (1096)
Q Consensus 877 ~l-~~s~~d~~~l~s~-~~dg~i~iw~~~ 903 (1096)
++ .|+| -+..+++| +..|.|.||.-+
T Consensus 468 ~vn~~HP-~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 468 SVNEFHP-MRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cceeecc-cccceeccCCccceEEEEecC
Confidence 54 8999 67645554 567888888543
No 162
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=1.5e-18 Score=172.38 Aligned_cols=266 Identities=16% Similarity=0.198 Sum_probs=188.4
Q ss_pred CcceEEeecCCCceEEEEEcCCCC-cEEEEEeCCCeEEEEecCCCCeee-cccceeecccccCccccccccccCCCCEEE
Q 001343 334 PRTVAVSLHQGSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLV-SKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1096)
Q Consensus 334 ~~~~~~~l~h~~~V~~v~fsp~g~-~llasg~~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1096)
|..-.....|.+.|+-+.-++-|+ .++|+=+..|.|.||++...-... .-.+.+-+ +...+...+.+|...=..
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence 344455567888899998888764 356666788999999986422111 00010000 111122357899999999
Q ss_pred EEEcCC-CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC---ce
Q 001343 412 VAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RK 486 (1096)
Q Consensus 412 l~~spd-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~---~~ 486 (1096)
++|||- -..|++|..-+.|++|...+|.-......+.+|+..|-.++|||..+. +|+|||.||+|+||| ..+ .+
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 999993 335778877789999999887654434457789999999999998877 899999999999999 666 33
Q ss_pred EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC---CCeeeEEeCCCCcEEEEEEcCCCC-EEEEEeeccCC
Q 001343 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---MGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDG 562 (1096)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~~~~~ 562 (1096)
+. .+.|.+.|+.+.|+... .+|++|+.||+++|||++. ++.+..+..|..+|+++.|+|... .+++++.
T Consensus 296 ~~-~kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~---- 368 (440)
T KOG0302|consen 296 VS-TKAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE---- 368 (440)
T ss_pred eE-eeccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC----
Confidence 33 38899999999997643 4999999999999999985 445678999999999999999655 4445554
Q ss_pred CCeEEEEeCCCCee----------------eEEEcCc-CccceEEEEEeCCC-CEEEEEEcCCeEEEE
Q 001343 563 DSFLVEWNESEGTI----------------KRTYAGF-RKKSNGVVQFDTTQ-NHFLAVGEDSQIKFW 612 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~----------------~~~~~~~-~~~~i~~~~~~~~~-~~l~~~~~dg~i~iw 612 (1096)
|.+|.+||+.-..- .+.+-.| .+..+.-+.|+++- .++++.+.||. .||
T Consensus 369 D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf-nVf 435 (440)
T KOG0302|consen 369 DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVF 435 (440)
T ss_pred CCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce-eEE
Confidence 99999999863211 1111122 12245557788754 46666667763 444
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=1.6e-18 Score=177.56 Aligned_cols=291 Identities=12% Similarity=0.139 Sum_probs=215.5
Q ss_pred CCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEEccCCCc-cc
Q 001343 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSND-LR 442 (1096)
Q Consensus 365 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~~~dg~i~vwd~~~~~~-~~ 442 (1096)
....++|||+...+.... +. -....-.+.++.|+.... .+++.+.|..|++|.-..... +.
T Consensus 10 ~gd~~kl~D~s~~~~~~~--------------~~---~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp 72 (673)
T KOG4378|consen 10 TGDKTKLSDFSDLETKSE--------------YV---HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVP 72 (673)
T ss_pred cCCceEEeecccccCccc--------------cc---cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccc
Confidence 445899999876543321 00 001123499999998764 233345677899997543211 11
Q ss_pred cceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEE
Q 001343 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIK 521 (1096)
Q Consensus 443 ~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 521 (1096)
....+.+. .-.|++...... ++++|+..+.|+||| ....+.+.+++|...|+++.++. ...+|++++..|.|.
T Consensus 73 ~~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs~gGdii 146 (673)
T KOG4378|consen 73 RVRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN--TDEYIASVSDGGDII 146 (673)
T ss_pred eeeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC--CcceeEEeccCCcEE
Confidence 11112222 233443333334 899999999999999 76667788899999999999866 447999999999999
Q ss_pred EEEcCCCCeeeEEeCCCC-cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCC-CE
Q 001343 522 AWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NH 599 (1096)
Q Consensus 522 iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 599 (1096)
+..+.++.....+....+ .|.-+.|++..+.+++... .+|.|.+||+....++..+...+..+...++|+|.. ..
T Consensus 147 ih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 147 IHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL 223 (673)
T ss_pred EEecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence 999998888887776644 5668999999988775443 289999999998888877765555588889999966 56
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCc
Q 001343 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTP 679 (1096)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 679 (1096)
|++.+.|..|++||.........+.... +...++|.++|.+|+.|...|.|..||+......+..+..|.. .
T Consensus 224 ~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~-----s 295 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA-----S 295 (673)
T ss_pred EEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc-----c
Confidence 7778999999999999877776665433 7899999999999999999999999999887677766666543 4
Q ss_pred ceeEEeecCC
Q 001343 680 IESVALKVSA 689 (1096)
Q Consensus 680 v~~~~~s~~g 689 (1096)
|++++|-+.-
T Consensus 296 Vt~vafq~s~ 305 (673)
T KOG4378|consen 296 VTRVAFQPSP 305 (673)
T ss_pred eeEEEeeecc
Confidence 8889998765
No 164
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=3e-18 Score=171.16 Aligned_cols=248 Identities=16% Similarity=0.213 Sum_probs=191.0
Q ss_pred CEEEEEEcC-----CCCEEEEE---ECCCeEEEEEc-cCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEE
Q 001343 408 SVSRVAWSP-----DGNYVGVA---FTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 408 ~V~~l~~sp-----d~~~l~s~---~~dg~i~vwd~-~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~ 478 (1096)
.|+.++|.. +.++||+. +..|...|.-+ ++|+.-...-.+.||+++|..++|+|-+.. .|+|||+|.+|.
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~ 107 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVM 107 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEE
Confidence 466666654 46666653 22334444333 344444443457799999999999998776 899999999999
Q ss_pred EEE-cCC-------ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCC
Q 001343 479 VWE-LSG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550 (1096)
Q Consensus 479 iwd-~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~ 550 (1096)
||. ..+ +++..+.||...|..+.|||... +.|++++.|.+|.+|++.+++....+. |...|.++.|+.||
T Consensus 108 vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 108 VWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred EEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC
Confidence 999 333 35678899999999999999865 689999999999999999999999887 89999999999999
Q ss_pred CEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE---cCCeEEEEeCCCCeEEEEeecCC
Q 001343 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEG 627 (1096)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~ 627 (1096)
.++++.+. |..|++||.++++.+..-.+|.+.....+.|-.++..+-+|- .+.++-+||..+-+.-..+....
T Consensus 186 s~l~Ttck----DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD 261 (472)
T KOG0303|consen 186 SLLCTTCK----DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD 261 (472)
T ss_pred ceeeeecc----cceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec
Confidence 99999998 999999999999999998888876666677888888444442 67899999987643322222222
Q ss_pred CCCCccEEEEeCCCCEEEEEE-CCCcEEEEEcCCCc
Q 001343 628 GLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGL 662 (1096)
Q Consensus 628 ~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~ 662 (1096)
....|.---|.+|..+++.++ .|+.|+-|.+.+..
T Consensus 262 tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 262 TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 233566667888888887666 59999999997764
No 165
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.81 E-value=3.6e-18 Score=166.25 Aligned_cols=404 Identities=10% Similarity=0.110 Sum_probs=253.1
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEE
Q 001343 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1096)
Q Consensus 411 ~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~ 489 (1096)
-..|||+|+|+|+++.- .+.|=|.++-+.... -.--..|..+.|..|... .|.....|+.|.+|+ ...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql----f~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQL----FLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHH----HHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 36899999999999765 777888777554332 122456888999988875 566778899999999 77777778
Q ss_pred eeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEE
Q 001343 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1096)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iw 569 (1096)
+.....++.+++|+|++. ++|.+...|-.|.+|.+.+...... ......+..++|+|||++.+.++. .|-...+.+.
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sR-rDCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSR-RDCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeec-ccHHHHHHHH
Confidence 888888999999988432 6777888899999999987766543 233345689999999999998874 1111122233
Q ss_pred eCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEc--CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEE
Q 001343 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1096)
Q Consensus 570 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 647 (1096)
.-.....++.+..... ....+.|+|||+.+++-.. +-.|+.|... -.+..++|+|.+++|++|
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~~--------------lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------LGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeeec--------------cceeEEEeccccceEEee
Confidence 2333445555555544 5667999999987765431 2233322221 157889999999999999
Q ss_pred ECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCC
Q 001343 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDK 727 (1096)
Q Consensus 648 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 727 (1096)
+.|+.+|+.+- +.+.+-|.++-..
T Consensus 229 syD~~lrvlnh------------------------~tWk~f~eflhl~-------------------------------- 252 (447)
T KOG4497|consen 229 SYDQMLRVLNH------------------------FTWKPFGEFLHLC-------------------------------- 252 (447)
T ss_pred ccchhhhhhce------------------------eeeeehhhhccch--------------------------------
Confidence 99999988653 3333333333000
Q ss_pred CccccCCCCC-ccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceee
Q 001343 728 PRTVDDVTDK-PKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATA 806 (1096)
Q Consensus 728 ~l~s~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~ 806 (1096)
+-.|.+ +.++.-. ... -.-...++.|.|..- ...+|.......+...
T Consensus 253 ----s~~dp~~~~~~ke~-------~~~--------~ql~~~cLsf~p~~~---------~a~~~~~se~~YE~~~---- 300 (447)
T KOG4497|consen 253 ----SYHDPTLHLLEKET-------FSI--------VQLLHHCLSFTPTDL---------EAHIWEESETIYEQQM---- 300 (447)
T ss_pred ----hccCchhhhhhhhh-------cch--------hhhcccccccCCCcc---------ccCccccchhhhhhhh----
Confidence 000011 0111000 000 000112344444321 0011111000000000
Q ss_pred ecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecC---CeEEEEEcccceEEEeecCCCCCeeEEEEecC
Q 001343 807 SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG---GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQ 883 (1096)
Q Consensus 807 ~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~d---g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~ 883 (1096)
..++ ...-+... .++. ....+.-++||+|..++|+-.| +.+.+||++..++...+. ...+|....|.|
T Consensus 301 -~pv~---~~~lkp~t-D~pn--Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP- 371 (447)
T KOG4497|consen 301 -TPVK---VHKLKPPT-DFPN--PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP- 371 (447)
T ss_pred -ccee---eecccCCC-CCCC--cccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-
Confidence 0000 00011111 2332 4566888999999999999986 569999998877666553 345899999999
Q ss_pred CCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Eecc
Q 001343 884 DNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHET 952 (1096)
Q Consensus 884 d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~ 952 (1096)
....|+.+.....+.+|...... ++..+.. .+ .|..++|..+|..++. +.|.
T Consensus 372 ~~prL~vctg~srLY~W~psg~~---------------~V~vP~~-GF-~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 372 GRPRLVVCTGKSRLYFWAPSGPR---------------VVGVPKK-GF-NIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred CCceEEEEcCCceEEEEcCCCce---------------EEecCCC-Cc-eeeeEEecCCCcEEEEEcCCc
Confidence 78888888877789999877644 3344332 34 8999999999999888 5443
No 166
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.4e-16 Score=172.16 Aligned_cols=461 Identities=11% Similarity=0.096 Sum_probs=275.8
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC-----
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----- 417 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----- 417 (1096)
|...-.++.|+|.| ++|-| ....|.|-|..+-+.+.. +.-|...|+.+.|.|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAyg-shslV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYG-SHSLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEe-cCceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchh
Confidence 44457889999999 67776 456888889887776643 6669999999999873
Q ss_pred -C------CEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC---CCcEEEEEEeCCCcEEEEE-cCCce
Q 001343 418 -G------NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCGDDKLIKVWE-LSGRK 486 (1096)
Q Consensus 418 -~------~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d---~~~~~l~s~s~d~~i~iwd-~~~~~ 486 (1096)
+ -.||++...|.|.+||...+..+. .+..|..++..++|-+. .+. +|+.-....++.+|+ .+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 1 256777778999999999887665 47789999999999763 333 677777788999999 99999
Q ss_pred EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC------CeeeEEe-CCCC--------------------
Q 001343 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM------GSRVDYD-APGH-------------------- 539 (1096)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~-~~~~-------------------- 539 (1096)
............|+.+.|-.. ..+..-+..|.+.+-+.-.. ...+.+. .|..
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eeccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 888876667777788776533 44555555666665543211 1111111 1100
Q ss_pred -----cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCC--CEEEEEEcCCeEEEE
Q 001343 540 -----WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFW 612 (1096)
Q Consensus 540 -----~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~iw 612 (1096)
....++|+|.-+.++.... ...+.++|++-..++....-..+ .+..+.+-|++ ..+++.-.||.+.+|
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEE
Confidence 1223567787665555554 78899999998888877766555 44456666655 578999999999999
Q ss_pred eCCCC----------------eEEEEeecCCCCCCccEEEEeCC-CCEEEEEECCCcEEEEEcCCCccccccccCCCcc-
Q 001343 613 DMDNV----------------NILTSTDAEGGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAIGLRSLRAVENPPFE- 674 (1096)
Q Consensus 613 d~~~~----------------~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~- 674 (1096)
-.+.. +....+...... .+......|. ...++.--.+|.+.+|.+.++........+....
T Consensus 302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~ 380 (1062)
T KOG1912|consen 302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELV 380 (1062)
T ss_pred EeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccc
Confidence 87652 222222211111 1222333443 4555666678889999998762111111100000
Q ss_pred ---------cccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCC--CCCCccccCCCCCccceee
Q 001343 675 ---------ALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRS--MDKPRTVDDVTDKPKPWQL 743 (1096)
Q Consensus 675 ---------~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~--d~~~l~s~~~dg~i~iw~~ 743 (1096)
..-+...-+.++.||..- .+... .+..++............-.+ --.++|.|...|+|.++|+
T Consensus 381 ~pf~f~~~~~~v~k~~l~~LS~dg~h~-----sGs~~-~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdv 454 (1062)
T KOG1912|consen 381 LPFDFNLSTKLVGKTSLISLSDDGSHS-----SGSTC-VRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDV 454 (1062)
T ss_pred ccccccCceeehhhccccchhhcCCCC-----CCcee-eecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEe
Confidence 000000111222222110 01000 111111111111000001111 1246788999999999999
Q ss_pred eeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccc
Q 001343 744 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 823 (1096)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~ 823 (1096)
.. +.... .+.- |...|.++.|..... +++.+.+.... ........+.+-|+.+|.....
T Consensus 455 st----~~v~~-~fsv---ht~~VkgleW~g~ss-lvSfsys~~n~------------~sg~vrN~l~vtdLrtGlsk~f 513 (1062)
T KOG1912|consen 455 ST----NAVAA-SFSV---HTSLVKGLEWLGNSS-LVSFSYSHVNS------------ASGGVRNDLVVTDLRTGLSKRF 513 (1062)
T ss_pred cc----hhhhh-hhcc---cccceeeeeecccee-EEEeeeccccc------------cccceeeeEEEEEccccccccc
Confidence 84 32222 2222 899999999988876 55554431100 0001111344556666664442
Q ss_pred c-ccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceE
Q 001343 824 D-VAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKV 864 (1096)
Q Consensus 824 ~-~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~ 864 (1096)
. +++ ....+|+.+..|..|+||+... +.-+.+||+++..+
T Consensus 514 R~l~~-~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~ 555 (1062)
T KOG1912|consen 514 RGLQK-PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRM 555 (1062)
T ss_pred ccCCC-CCcCcceeeeecccCceEEEEecccchHHHhhccchH
Confidence 2 222 3577999999999999999999 57799999976543
No 167
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=3.1e-18 Score=170.10 Aligned_cols=247 Identities=20% Similarity=0.244 Sum_probs=192.3
Q ss_pred cccCCCCEEEEEEcCCC--CEEEEEECCCeEEEEEccCC-------------CccccceeecccccCEEEEEEecCCCcE
Q 001343 402 FKDVPISVSRVAWSPDG--NYVGVAFTKHLIQLYSYAGS-------------NDLRQHSQIDAHVGAVNDLAFAYPNKLL 466 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~--~~l~s~~~dg~i~vwd~~~~-------------~~~~~~~~l~~h~~~v~~l~~s~d~~~~ 466 (1096)
...|.+.|+-+.-++-+ .+.|+-+..|.|.||++... ...+.+.++.+|.+.=+.++|||-...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g- 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG- 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-
Confidence 45678888888888754 45556677899999997521 223455678899999999999994443
Q ss_pred EEEEEeCCCcEEEEE-cCCceE---EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe--eeEEeCCCCc
Q 001343 467 CVVTCGDDKLIKVWE-LSGRKL---FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHW 540 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd-~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~ 540 (1096)
.|+||.--+.|++|. .+|.-. ..|.+|+..|-.++|+|..+ ..|++|+.||+|+|||++.+.. ......|+..
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 589998889999999 666543 44678999999999999876 5899999999999999998733 2344788889
Q ss_pred EEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC---CeeeEEEcCcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCC
Q 001343 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---GTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 541 i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 616 (1096)
|+-+.|+....+|++|+. +|.+.|||++. ++++..|+.|.. +|+++.|+|.. ..|++++.|.+|.+||+..
T Consensus 305 VNVISWnr~~~lLasG~D----dGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGD----DGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeeEEccCCcceeeecCC----CceEEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 999999999888999886 99999999875 678889999988 99999999965 5677888999999999853
Q ss_pred Ce----------------EEEEeecCCCCCCccEEEEeCCC-CEEEEEECCCcEEEE
Q 001343 617 VN----------------ILTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADNGFKIL 656 (1096)
Q Consensus 617 ~~----------------~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw 656 (1096)
.. +.+.+-.|.+...+..+.|++.- .++++.+.|| +.||
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 21 11223334445578899999843 5777777776 4444
No 168
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.2e-18 Score=177.10 Aligned_cols=259 Identities=12% Similarity=0.160 Sum_probs=187.7
Q ss_pred ceEEEEEcCC-------CCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCc------cccccccccCCCCEEEE
Q 001343 346 TVISMDFHPS-------HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSL------PFQASIFKDVPISVSRV 412 (1096)
Q Consensus 346 ~V~~v~fsp~-------g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~h~~~V~~l 412 (1096)
.-.|++|... |+ |+|.|+.|..|.|||+.=...+. ....+..... ..+.....+|+..|.++
T Consensus 175 fPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~L 249 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLAL 249 (463)
T ss_pred cchhhhhhhcCCCCCCCcc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHHH
Confidence 3466666543 45 79999999999999986322110 0000000000 00112345799999999
Q ss_pred EEcCC-CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceE-EE
Q 001343 413 AWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL-FN 489 (1096)
Q Consensus 413 ~~spd-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~-~~ 489 (1096)
+|+.+ .+.||+||.|.+|++||+.+|++.. ++..|.+.|.++.|+|.... +|++|+.|++|.+.| ...... ..
T Consensus 250 s~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~ 325 (463)
T KOG0270|consen 250 SWNRNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKE 325 (463)
T ss_pred HhccccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCce
Confidence 99986 5588999999999999999999877 56789999999999998776 899999999999999 533222 23
Q ss_pred eeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC-CeeeEEeCCCCcEEEEEEcCCCCE-EEEEeeccCCCCeEE
Q 001343 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSR-LFSCGTSKDGDSFLV 567 (1096)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~-l~~~~~~~~~~~~i~ 567 (1096)
++ ..+.|-.+.|.+... ..++++..||+++-+|++.. +++.++..|..+|.++++++.-.. +++++. ++.++
T Consensus 326 wk-~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~----d~~Vk 399 (463)
T KOG0270|consen 326 WK-FDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAST----DKVVK 399 (463)
T ss_pred EE-eccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccc----cceEE
Confidence 33 466788999987643 57888899999999999976 778899999999999999987655 455554 99999
Q ss_pred EEeCCCCeee--EEEcCcCccceEEEEEeCCCC-EEEEEEcCCeEEEEeCCCCeEE
Q 001343 568 EWNESEGTIK--RTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNIL 620 (1096)
Q Consensus 568 iwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 620 (1096)
+|++..-... ..-.-.-+ ...|.++.|+-. .++.|+..+.++|||+.+...+
T Consensus 400 lw~~~~~~~~~v~~~~~~~~-rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 400 LWKFDVDSPKSVKEHSFKLG-RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EEeecCCCCccccccccccc-ceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 9998654332 11111111 355566667654 4666778888999999876544
No 169
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=4.3e-17 Score=168.84 Aligned_cols=229 Identities=14% Similarity=0.108 Sum_probs=169.0
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEE-ec-----CCCcEEEEEEeCCCcE
Q 001343 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF-AY-----PNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~-s~-----d~~~~~l~s~s~d~~i 477 (1096)
.|...|.|+.|+.+...+.+++.+..++-||+.+... .. +.-....|....+ -+ .+..-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~---~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EV---AKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hh---hhCCcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 4777788999999888887776655555555544321 11 1111111111111 00 1111168889999999
Q ss_pred EEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEe
Q 001343 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 478 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
.+.+..++.......|.+.+.+-.|++ +|.-|+++++||.|++|. +++.....+......|.|++|.|+.+.++.|.
T Consensus 88 ~il~k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 88 VILNKSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred EEecccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec
Confidence 999999999999999999999999977 667799999999999997 33444444455566899999999999888775
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEE
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 637 (1096)
.+.+.|=.+.....+-..+.|.+ .|.++.|++..+.+++|++|-..++||-. |..+..-..+.. +|++++|
T Consensus 165 -----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey--~ITSva~ 235 (737)
T KOG1524|consen 165 -----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY--AITSVAF 235 (737)
T ss_pred -----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc--ceeeeee
Confidence 66787777777777777888887 89999999999999999999999999974 555555555555 8999999
Q ss_pred eCCCCEEEEEEC
Q 001343 638 SKEGNLLAVTTA 649 (1096)
Q Consensus 638 s~~~~~l~~~~~ 649 (1096)
+|+ ..++.++.
T Consensus 236 npd-~~~~v~S~ 246 (737)
T KOG1524|consen 236 NPE-KDYLLWSY 246 (737)
T ss_pred ccc-cceeeeee
Confidence 999 55555543
No 170
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=2.7e-18 Score=167.54 Aligned_cols=280 Identities=16% Similarity=0.217 Sum_probs=199.6
Q ss_pred cccccCCCCEEEEEEcC-----CCCEEEEEECCCeEEEEEccCCCccccceee--cccccCEEEEEEecCCC--cEEEEE
Q 001343 400 SIFKDVPISVSRVAWSP-----DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI--DAHVGAVNDLAFAYPNK--LLCVVT 470 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~sp-----d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l--~~h~~~v~~l~~s~d~~--~~~l~s 470 (1096)
++..+|+.+|..++|.+ .-..+|+++. ..+.+|+......++.+... ..|......++|+-|.. ..++|.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 45678999999999985 2346666665 48888987754433322222 24788889999986532 227889
Q ss_pred EeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE---eCCCCcEEEEEE
Q 001343 471 CGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPGHWCTTMLY 546 (1096)
Q Consensus 471 ~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~ 546 (1096)
++.-|.|+|.| .++++...+.+|...|+.+.++|.. .+++++++.|..||+|++++..++..+ .+|...|.++.|
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~-~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR-PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCC-CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 99999999999 9999999999999999999999874 579999999999999999999998876 457779999999
Q ss_pred cCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEE----------------------------cCcCccceEEEEEeCCCC
Q 001343 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY----------------------------AGFRKKSNGVVQFDTTQN 598 (1096)
Q Consensus 547 s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~----------------------------~~~~~~~i~~~~~~~~~~ 598 (1096)
+.+|.++++++. |..|++|++...+....+ .-|.. .|.|+.| -|+
T Consensus 190 ~~~gd~i~ScGm----Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrn-yVDCvrw--~gd 262 (385)
T KOG1034|consen 190 SLDGDRIASCGM----DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRN-YVDCVRW--FGD 262 (385)
T ss_pred cCCCCeeeccCC----cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccc-hHHHHHH--Hhh
Confidence 999999999998 999999999843211110 01111 2333333 257
Q ss_pred EEEEEEcCCeEEEEeC-CCCeE-------------EEEeecCCCCCCccEE--EEeCCCCEEEEEECCCcEEEEEcCCCc
Q 001343 599 HFLAVGEDSQIKFWDM-DNVNI-------------LTSTDAEGGLPNLPRL--RFSKEGNLLAVTTADNGFKILANAIGL 662 (1096)
Q Consensus 599 ~l~~~~~dg~i~iwd~-~~~~~-------------~~~~~~~~~~~~v~~~--~~s~~~~~l~~~~~dg~i~iwd~~~~~ 662 (1096)
++++-+-++.|..|.. +-++. +..+..... .++-+ +|.|-+++||.|...|.|.+||+.+..
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c--~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC--DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNE 340 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc--ceEEEEEeecHHHHHHhhccCCCcEEEEECCCCC
Confidence 8899888899999987 22222 222222222 34444 556778999999999999999998774
Q ss_pred cccccccCCCcccccCcceeEEeecCCCeE
Q 001343 663 RSLRAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 663 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
.. ....+........|+..+|+.||..+
T Consensus 341 p~--~~ttl~~s~~~~tVRQ~sfS~dgs~l 368 (385)
T KOG1034|consen 341 PP--KCTTLTHSKSGSTVRQTSFSRDGSIL 368 (385)
T ss_pred Cc--cCceEEeccccceeeeeeecccCcEE
Confidence 32 11222222233446666776666655
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=8.2e-18 Score=163.63 Aligned_cols=285 Identities=15% Similarity=0.208 Sum_probs=209.2
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCcccc--ccccccCCCCEEEEEEc-------CC
Q 001343 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQ--ASIFKDVPISVSRVAWS-------PD 417 (1096)
Q Consensus 347 V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~V~~l~~s-------pd 417 (1096)
...+.|||||.. +.+-+.|..+.+|++...-.-..... ...+. ..+-......|...+|= |+
T Consensus 52 ~kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~~--------~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~ 122 (406)
T KOG2919|consen 52 LKGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKADG--------PLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS 122 (406)
T ss_pred hccceeCCCCce-EEeecccCeeeEEecChhhcccCCCC--------ccccccceeEEeccCCEEEEEEeeeccccCCCc
Confidence 456899999994 66778999999999853211100000 00000 00011124456766664 67
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccC---EEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceE--EEe
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGA---VNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKL--FNF 490 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~---v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~--~~~ 490 (1096)
..++|+.+.+.-|++||.-+|+...... ...|... ..+++|+|||. .|++ +....|+++| ..|+.. ..-
T Consensus 123 t~l~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--qlfa-GykrcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 123 TNLFAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QLFA-GYKRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred cceeeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eEee-cccceEEEeeccCCCCCCcchhh
Confidence 8899999999999999999998655432 2235443 46899999999 6665 5588999999 455432 111
Q ss_pred -----eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCe
Q 001343 491 -----EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1096)
Q Consensus 491 -----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~ 565 (1096)
.+..+-|.+++|+|. +...++.|+.-.++-|+.-........+-+|.+.|+.+.|.++|+.|++|.. .+..
T Consensus 199 ~~~~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dk 274 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDK 274 (406)
T ss_pred hhcccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCe
Confidence 234667889999987 4468999999999999998888999999999999999999999999999876 3778
Q ss_pred EEEEeCCC-CeeeEEEcCcCccceEE--EEEeCCCCEEEEEEcCCeEEEEeCCC-CeEEEEeecCCCCCCccEEEEeCCC
Q 001343 566 LVEWNESE-GTIKRTYAGFRKKSNGV--VQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEG 641 (1096)
Q Consensus 566 i~iwd~~~-~~~~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1096)
|..||++. +.++..+..|....-.. ....|.+++|++|+.||.|++||+++ +..+..+..+.. .++.++++|--
T Consensus 275 Il~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~m 352 (406)
T KOG2919|consen 275 ILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIM 352 (406)
T ss_pred EEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCccc
Confidence 99999985 44556666655422222 44568899999999999999999998 776766666655 89999999998
Q ss_pred CEEEEEECC
Q 001343 642 NLLAVTTAD 650 (1096)
Q Consensus 642 ~~l~~~~~d 650 (1096)
.++|+++..
T Consensus 353 pilatssGq 361 (406)
T KOG2919|consen 353 PILATSSGQ 361 (406)
T ss_pred ceeeeccCc
Confidence 888888754
No 172
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=1.4e-15 Score=176.93 Aligned_cols=370 Identities=21% Similarity=0.379 Sum_probs=275.5
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCC-ccccceeecccc-cCEEEEEE-ecCCCcEEEEE-EeCCCcE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN-DLRQHSQIDAHV-GAVNDLAF-AYPNKLLCVVT-CGDDKLI 477 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~l~~h~-~~v~~l~~-s~d~~~~~l~s-~s~d~~i 477 (1096)
+..|...|.++.+.+.+..++.++.|+.+.+|+...+. ... .+.++. ..+..+.+ .+++.. .++. +..|+.+
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~ 136 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK---SLEGLHDSSVSKLALSSPDGNS-ILLASSSLDGTV 136 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE---EEeccCCCceeeEEEECCCcce-EEeccCCCCccE
Confidence 55689999999999999999999999999999998875 333 344433 37777777 777763 3444 3449999
Q ss_pred EEEE-cC-CceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC-CCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCC-EE
Q 001343 478 KVWE-LS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RL 553 (1096)
Q Consensus 478 ~iwd-~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l 553 (1096)
.+|| .. ......+..|...|..++|++ ++..+++++. |+.+++|+.........+..|...+.+++|+|++. .+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSP--DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECC--CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEE
Confidence 9999 44 688889999999999999977 4457888875 99999999998778888888899999999999998 44
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeE-EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeE-EEEeecCCCCCC
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKR-TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI-LTSTDAEGGLPN 631 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~ 631 (1096)
++++. ++.+++||...+.... .+.+|.. .. ...|++++..+++++.|+.+++|+...... ...+..+ ...
T Consensus 215 ~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~ 286 (466)
T COG2319 215 ASGSS----DGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SSS 286 (466)
T ss_pred EEecC----CCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC--Ccc
Confidence 44354 8999999998888888 6888776 33 338999998899999999999999987664 4444333 448
Q ss_pred ccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcC
Q 001343 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1096)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~ 711 (1096)
+.++.|+|++..+++++.|+.+.+|+..+.... ....
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~------------------------------------------ 323 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL-SSLT------------------------------------------ 323 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCceE-EEee------------------------------------------
Confidence 999999998888888998988999977554110 0000
Q ss_pred CCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEe-ecCCeEEE
Q 001343 712 SPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL-GSNGVQKL 790 (1096)
Q Consensus 712 ~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~-~~dg~v~v 790 (1096)
... |...+..+.|.+++..++.+ ..++.+.+
T Consensus 324 ---------------------------------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 355 (466)
T COG2319 324 ---------------------------------------------LKG---HEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355 (466)
T ss_pred ---------------------------------------------ecc---cCCceEEEEECCCCCEEEEeecCCCcEEe
Confidence 000 44456667773232445555 45778888
Q ss_pred eeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEE-ec-CCeEEEEEcccceEEEee
Q 001343 791 WKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS-AT-GGKISLFNMMTFKVMTTF 868 (1096)
Q Consensus 791 w~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~-~~-dg~v~iwd~~~~~~~~~~ 868 (1096)
|++.... ... ... ....+..+.+++ ...++. +. ++.+.+|+..........
T Consensus 356 ~~~~~~~----------------------~~~-~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (466)
T COG2319 356 WDLRTGK----------------------PLK-TLE---GHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNL 408 (466)
T ss_pred eecCCCc----------------------eeE-Eec---CCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeec
Confidence 8764311 000 011 112277888888 533333 34 689999999888887776
Q ss_pred cCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeecc
Q 001343 869 MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (1096)
Q Consensus 869 ~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~ 904 (1096)
..+...+....+++ ++..+++++.++.+++|++..
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 409 DGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cCCCCcEEEEEECC-CCcEEEEecCCCcEEEEeccC
Confidence 65547888999999 899999999999999999876
No 173
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=3.3e-17 Score=169.67 Aligned_cols=269 Identities=16% Similarity=0.213 Sum_probs=191.7
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE--cCCCC
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW--SPDGN 419 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~--spd~~ 419 (1096)
.|..-|.|+.|+.+.. ++.++ .|..+.+|.-.+...... .+ +..... + -..| +....- -....
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~-dDh~~~~~~~~~~~s~~~--~~---~p~df~--p---t~~h---~~~rs~~~g~~~d 76 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVS-DDHQIFKWSDVSRDSVEV--AK---LPDDFV--P---TDMH---LGGRSSGGGKGSD 76 (737)
T ss_pred ccceeEEeecccccce-EEEec-cCceEEEeecccchhhhh--hh---CCcccC--C---cccc---ccccccCCCCCcc
Confidence 4777789999999988 45554 566666665443332211 00 000000 0 0001 000000 01245
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEE
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYS 499 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~ 499 (1096)
.++.++.||.+.+.+-.. +..+ .+.+|.+.|.+-.|+|||. -|+++++||.|++|..+|..-.++.....+|.|
T Consensus 77 ~~~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRC 150 (737)
T ss_pred eEEEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEeccchHHHHHhhcCceeEE
Confidence 788899999999887443 3333 4778999999999999999 799999999999999999887777778889999
Q ss_pred EEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEE
Q 001343 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1096)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 579 (1096)
++|.|..+ ..+++.+ +.+.|=-+.....+.....|.+-|.++.|++..+.+++++. |-..++||.. |..+..
T Consensus 151 ~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~ 222 (737)
T KOG1524|consen 151 ARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFT 222 (737)
T ss_pred EEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-Cccccc
Confidence 99988653 3444443 55666666777788899999999999999999999999997 9999999965 555555
Q ss_pred EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEE
Q 001343 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1096)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 655 (1096)
-..|.- +|++++|.|+ ..++.++. ++++ +... ..+.|..++|++||..+++|+..|.+.+
T Consensus 223 S~~~ey-~ITSva~npd-~~~~v~S~-nt~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 223 SAAEEY-AITSVAFNPE-KDYLLWSY-NTAR------------FSSP-RVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred CChhcc-ceeeeeeccc-cceeeeee-eeee------------ecCC-CccceEEEEEcCCCceeeccccCceEEE
Confidence 555555 8999999999 66666654 3444 2111 2347899999999999999999888765
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=1.9e-17 Score=165.48 Aligned_cols=234 Identities=14% Similarity=0.220 Sum_probs=184.7
Q ss_pred cccccCCCCEEEEEEcC-CCCEEEEEECCCeEEEEEccCCCccc----cceeecccccCEEEEEEecCCCcEEEEEEeCC
Q 001343 400 SIFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLR----QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d 474 (1096)
..+.||+++|..++|+| +...||+|+.|.+|.||++-.+...+ ....|.||...|--++|+|...+ +|++++.|
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~D 153 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSD 153 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCC
Confidence 35889999999999999 67889999999999999987654332 33468899999999999998877 89999999
Q ss_pred CcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCC-cEEEEEEcCCCCE
Q 001343 475 KLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSR 552 (1096)
Q Consensus 475 ~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~ 552 (1096)
.+|.+|| .+|+.+.++. |...|++++|+. ||.+|++.+.|..|||||.++++.+..-..|.+ .-..+.|-.+|.
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~- 229 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK- 229 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-
Confidence 9999999 9999988888 999999999976 778999999999999999999998887766655 556677778888
Q ss_pred EEEEeeccCCCCeEEEEeCCCCee---eEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeE-EEEeecCC
Q 001343 553 LFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI-LTSTDAEG 627 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~ 627 (1096)
+++.+.++-.+.++-+||..+-+. ...+.... .|.--.|.++.+.++.+| .|+.|+-|.+....+ +..+....
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn--Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~ 307 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN--GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFS 307 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEeccCC--ceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccc
Confidence 777777777799999999775432 33343333 455556788888776655 899999999987653 33333322
Q ss_pred CCCCccEEEEeCC
Q 001343 628 GLPNLPRLRFSKE 640 (1096)
Q Consensus 628 ~~~~v~~~~~s~~ 640 (1096)
...+-..+.|-|.
T Consensus 308 S~epQRG~g~mPK 320 (472)
T KOG0303|consen 308 SKEPQRGMGFMPK 320 (472)
T ss_pred cCCcccccccccc
Confidence 2334466677664
No 175
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.79 E-value=3.2e-17 Score=164.92 Aligned_cols=307 Identities=12% Similarity=0.186 Sum_probs=206.9
Q ss_pred CccccCCCCCccceeeeeeecCCc---eE-EEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCc
Q 001343 728 PRTVDDVTDKPKPWQLAEIVDSGQ---CR-LVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGK 803 (1096)
Q Consensus 728 ~l~s~~~dg~i~iw~~~~~~~~~~---~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~ 803 (1096)
.+++|+.|..|++|.+......+. .. .-.+.. |...|+.+.|+|+|..+++++.+|.+.+|........+...
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~---H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~ 104 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSR---HTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADT 104 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccC---CcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccc
Confidence 678999999999999986544442 11 123444 99999999999999988888889999999875311100000
Q ss_pred eeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEec
Q 001343 804 ATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882 (1096)
Q Consensus 804 ~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~ 882 (1096)
-+... ...-.+...+.| |...|..++|+||+.++++++ |..+++||+..|.+...+..|...+..++|.|
T Consensus 105 -e~~~~------ke~w~v~k~lr~--h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp 175 (434)
T KOG1009|consen 105 -EADLN------KEKWVVKKVLRG--HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP 175 (434)
T ss_pred -hhhhC------ccceEEEEEecc--cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch
Confidence 00000 001122234555 999999999999999999999 89999999999999999999999999999999
Q ss_pred CCCcEEEEeeCCCeEEEEeecccee--e----eeeccccccccceeeecCCCCCC-CCCceEEEecCCcEEEE-E----e
Q 001343 883 QDNNIIAIGTEDSTIHIYNVRVDEL--C----VWSIDTWEKRKSVTIHIPAGKTP-TGDTRVQFNADQVRMLV-V----H 950 (1096)
Q Consensus 883 ~d~~~l~s~~~dg~i~iw~~~~~~~--~----~w~~~~~~~~~~~~~~~~~~~~~-~~v~~v~fs~dg~~l~~-~----~ 950 (1096)
-++++++-+.|...+.+.+....+ + +-.........++..+.+...+. +-...++|+|||.+|++ + .
T Consensus 176 -l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~ 254 (434)
T KOG1009|consen 176 -LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKV 254 (434)
T ss_pred -hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeee
Confidence 899999999998777777765541 0 00001111111122222222211 34567899999999998 2 1
Q ss_pred cceE-----EEEEccccee-ccccccCCCCCCCceEEEEee------------------CCcEEEEEecCCcEEEEecCC
Q 001343 951 ETQL-----AIYDASKMER-IRQWTPQDALSAPISCAVYSC------------------NSQLVFATFCDGNIGVFDADT 1006 (1096)
Q Consensus 951 d~~i-----~iwd~~~~~~-~~~~~~~~~~~~~i~~l~~s~------------------dg~~la~~~~dg~i~vwd~~~ 1006 (1096)
.+.+ ++|+-...+. ...+... ..++..+.|+| -+-.+|+++.| .|+|||.++
T Consensus 255 g~~~~~n~tYvfsrk~l~rP~~~lp~~---~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~ 330 (434)
T KOG1009|consen 255 GGGVFRNTSYVFSRKDLKRPAARLPSP---KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQT 330 (434)
T ss_pred CCceeeceeEeeccccccCceeecCCC---CcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEecccc
Confidence 3333 4444332221 1222221 45566666665 12235555554 899999998
Q ss_pred CceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCCC
Q 001343 1007 LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1063 (1096)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~ 1063 (1096)
...++... ++ |-..++ +++|++ ||..|+..|.||..-+-.++..|
T Consensus 331 ~~P~~~v~-------ni--hy~~iT--Diaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 331 LEPLAVVD-------NI--HYSAIT--DIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred ccceEEEe-------ee--eeeeec--ceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 88666544 23 677888 699999 99999999999987776665554
No 176
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=4.2e-17 Score=158.79 Aligned_cols=284 Identities=10% Similarity=0.121 Sum_probs=194.0
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe------------EEEEeecCCCCCCccEEEEe-------CCCCEEEEE
Q 001343 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN------------ILTSTDAEGGLPNLPRLRFS-------KEGNLLAVT 647 (1096)
Q Consensus 587 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~s-------~~~~~l~~~ 647 (1096)
....+.|+|||..|++-+.|..+.+|++...- ....+.... ...|...+|- |+..++++.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~e-g~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQE-GETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEecc-CCEEEEEEeeeccccCCCccceeeec
Confidence 34458899999999999999999999985311 111111111 1256777775 677899999
Q ss_pred ECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCC
Q 001343 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDK 727 (1096)
Q Consensus 648 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 727 (1096)
+.+.-|++||..+| +....+........-...-++.|+|||..+.++..
T Consensus 130 sr~~PIh~wdaftG-~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk------------------------------ 178 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTG-KLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK------------------------------ 178 (406)
T ss_pred cccCceeeeecccc-ccccchhhhhhHHhhhhheeEEecCCCCeEeeccc------------------------------
Confidence 99999999999998 44444444433222334557888888888754444
Q ss_pred CccccCCCCCccceeeeeeecCCceEEEE--cCCCCCCcccEEEEEEecCCc-eEEEeecCCeEEEeeccCCccCCCCce
Q 001343 728 PRTVDDVTDKPKPWQLAEIVDSGQCRLVT--MPESTDTSSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKA 804 (1096)
Q Consensus 728 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~v~vw~~~~~~~~~~g~~ 804 (1096)
..|+++++.. .+..|.... ..+..+..+-|.+++|+|... .++.++....+-||.-.
T Consensus 179 --------rcirvFdt~R--pGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~---------- 238 (406)
T KOG2919|consen 179 --------RCIRVFDTSR--PGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD---------- 238 (406)
T ss_pred --------ceEEEeeccC--CCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC----------
Confidence 7788888742 122222211 111122466789999999665 56666666677666532
Q ss_pred eeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec--CCeEEEEEccc-ceEEEeecCCCC-CeeEEE-
Q 001343 805 TASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMT-FKVMTTFMSPPP-ASTFLA- 879 (1096)
Q Consensus 805 ~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~--dg~v~iwd~~~-~~~~~~~~~h~~-~i~~l~- 879 (1096)
.+..+. .+-| |.+.|+.++|.+||+.|.+|. +..|..||++. +..+-.+..|.+ .-..|.
T Consensus 239 ------------~~~pl~-llgg--h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~F 303 (406)
T KOG2919|consen 239 ------------GRRPLQ-LLGG--HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILF 303 (406)
T ss_pred ------------CCCcee-eecc--cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEE
Confidence 223333 3445 999999999999999999999 68899999965 445666777765 333444
Q ss_pred -EecCCCcEEEEeeCCCeEEEEeecc-ceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceE
Q 001343 880 -FHPQDNNIIAIGTEDSTIHIYNVRV-DELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL 954 (1096)
Q Consensus 880 -~s~~d~~~l~s~~~dg~i~iw~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i 954 (1096)
..| ++++|++|+.||.|++||++. +. .+.....+.. .+..|+++|-=..+|+++...+
T Consensus 304 Dld~-~~~~LasG~tdG~V~vwdlk~~gn---------------~~sv~~~~sd-~vNgvslnP~mpilatssGqr~ 363 (406)
T KOG2919|consen 304 DLDP-KGEILASGDTDGSVRVWDLKDLGN---------------EVSVTGNYSD-TVNGVSLNPIMPILATSSGQRI 363 (406)
T ss_pred ecCC-CCceeeccCCCccEEEEecCCCCC---------------cccccccccc-cccceecCcccceeeeccCcee
Confidence 467 899999999999999999987 33 3344445554 8899999999777777543333
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2.3e-18 Score=180.38 Aligned_cols=266 Identities=15% Similarity=0.239 Sum_probs=194.0
Q ss_pred eec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCC
Q 001343 340 SLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1096)
Q Consensus 340 ~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~ 418 (1096)
++. |.+.|+.++|+|... .|++++.||+|.+|+++....-....+ .+.-.|.+|.++|.|+++++++
T Consensus 289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~-----------epi~tfraH~gPVl~v~v~~n~ 356 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDV-----------EPILTFRAHEGPVLCVVVPSNG 356 (577)
T ss_pred eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccce-----------eeeEEEecccCceEEEEecCCc
Confidence 555 999999999999998 699999999999999944211111111 1223588999999999999999
Q ss_pred CEEEEEECCCeEEEEEccCCCc-------cccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe
Q 001343 419 NYVGVAFTKHLIQLYSYAGSND-------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF 490 (1096)
Q Consensus 419 ~~l~s~~~dg~i~vwd~~~~~~-------~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~ 490 (1096)
..+.+|+.||+|+.|++..... ......+.||.+.|+.+++++... .|++|+.||+++.|+ ....+ .++
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f 433 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTF 433 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-ccc
Confidence 9999999999999996642211 111125789999999999999888 799999999999999 44443 344
Q ss_pred eCC--CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC-------CCcEEEEEEcCCCCEEEEEeeccC
Q 001343 491 EGH--EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------GHWCTTMLYSADGSRLFSCGTSKD 561 (1096)
Q Consensus 491 ~~~--~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~l~~s~~~~~l~~~~~~~~ 561 (1096)
... .+.-.++.+.... -...++...-+.-.++++........+... ...+.-+..+|.+...+++..
T Consensus 434 ~~~~e~g~Plsvd~~ss~-~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he--- 509 (577)
T KOG0642|consen 434 GEPKEHGYPLSVDRTSSR-PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE--- 509 (577)
T ss_pred CCccccCCcceEeeccch-hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc---
Confidence 322 2233455543221 122333333333344444444444333221 125777888899988888886
Q ss_pred CCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC
Q 001343 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1096)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1096)
++.|+++|..+++++.....|.. .++++++.|+|.+|++++.||.+++|.+....++.....+
T Consensus 510 -d~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 -DRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred -CCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 99999999999999999998887 8999999999999999999999999999877666554433
No 178
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.3e-17 Score=164.03 Aligned_cols=294 Identities=12% Similarity=0.141 Sum_probs=211.9
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeec-ccceeecccccCccccccccccCCCCEEEEEEcCCCC
Q 001343 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS-KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1096)
Q Consensus 341 l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~ 419 (1096)
++|.+-|.++.||.+++ +||+|+.|..+++|++...-..+. +++.+ .-..|.+.|.|++|....+
T Consensus 53 ~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-------------~~~~H~SNIF~L~F~~~N~ 118 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGV-------------MEHPHRSNIFSLEFDLENR 118 (609)
T ss_pred hhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCcee-------------ccCccccceEEEEEccCCe
Confidence 56999999999999998 799999999999999864322211 11111 1233568999999999999
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc-eE--EEeeCCCC
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KL--FNFEGHEA 495 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~-~~--~~~~~~~~ 495 (1096)
+|.+|+.+++|..-|+++.+.+.... -....+.|+.+..+|-.+ .|++.+.+|.|.+|| .... .+ ..+.....
T Consensus 119 ~~~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~ 195 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK 195 (609)
T ss_pred eEecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCCCc
Confidence 99999999999999999977665211 122345999999999988 899999999999999 4332 22 23333455
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-------EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-------DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
....+.|+|.. ..+|++.+..+-+-+||.+...... .+......-.++.|+|+|+.+++.-. ...-.+
T Consensus 196 ~F~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~P~~ 270 (609)
T KOG4227|consen 196 NFYTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKCPLY 270 (609)
T ss_pred cceeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCCCEE
Confidence 67788898864 4788999999999999988654432 11122223467889999999988754 445566
Q ss_pred EeCCCCee-eEEEcCcCc-----cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC-----------------------eE
Q 001343 569 WNESEGTI-KRTYAGFRK-----KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-----------------------NI 619 (1096)
Q Consensus 569 wd~~~~~~-~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------------------~~ 619 (1096)
||+-+.++ +..+..... ..+.+++|..+ ..+++|+.+-.|++|.+... ..
T Consensus 271 ~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~ 349 (609)
T KOG4227|consen 271 FDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKE 349 (609)
T ss_pred eeeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecce
Confidence 78776443 333331111 13455677655 44899999999999987531 12
Q ss_pred EEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
+..+.+|.. -++.+.|+|...+|++.+-.+.++||...
T Consensus 350 ~~VLrGHRS--v~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 350 LTVLRGHRS--VPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eEEEecccc--cccceeecCCcceEeccchhhheeccccc
Confidence 334455544 78999999999999999999999999753
No 179
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=9.9e-16 Score=165.77 Aligned_cols=493 Identities=14% Similarity=0.170 Sum_probs=295.9
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC----------CCcEEEEEEeCCCc
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP----------NKLLCVVTCGDDKL 476 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d----------~~~~~l~s~s~d~~ 476 (1096)
..-.++.|+|.| .||.|+. ..|.|-|..+-+.+. .+.-|...|+.+.|.|. ...+.|+++...|.
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 346788999877 6676765 478888988766665 67789999999999863 13357888888999
Q ss_pred EEEEE-cCCceEEEeeCCCCCeEEEEeeecCCC--cEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCC-CCE
Q 001343 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENI--QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-GSR 552 (1096)
Q Consensus 477 i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-~~~ 552 (1096)
|.+|| ..+..+..+..|..++..++|.+..+. ..|++-....++.+|+..+++....+........++.+.|- .+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 99999 888888899999999999999876543 46777788899999999999999988887777788888883 344
Q ss_pred EEEEeeccCCCCeEEEEeCC-------CCeeeEEEcCcCc-----------cce-------------EEEEEeCCCCEEE
Q 001343 553 LFSCGTSKDGDSFLVEWNES-------EGTIKRTYAGFRK-----------KSN-------------GVVQFDTTQNHFL 601 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~-------~~~~~~~~~~~~~-----------~~i-------------~~~~~~~~~~~l~ 601 (1096)
+...+. .|.+.+-+.- .++..+.-..|.+ ... ..++|+|.-+.++
T Consensus 171 ~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 171 FCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred EEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 444333 5555554432 1222222222111 000 0146788777777
Q ss_pred EEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCC--CEEEEEECCCcEEEEEcCCCccccccccCCCcccccCc
Q 001343 602 AVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG--NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTP 679 (1096)
Q Consensus 602 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 679 (1096)
.......+.++|++-...+.......+ .+.-+.+-|++ ..|++.-.||.+.+|-........+.-..+-.......
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q 324 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQ 324 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccc
Confidence 777788999999999999988887766 55666777755 67999999999999976543111111000000000111
Q ss_pred ceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCC-CCCccccCCCCCccceeeeeeecCCceEEEEcC
Q 001343 680 IESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM-DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP 758 (1096)
Q Consensus 680 v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 758 (1096)
+..+.. ..... .......|. ...++.--.+|...+|.+.. +........
T Consensus 325 ~~~vr~--m~~~r------------------------p~~~~~cPs~~sa~avl~s~g~~~~w~l~~----~ri~~~~~s 374 (1062)
T KOG1912|consen 325 VHVVRP--MEEFR------------------------PVIGASCPSTPSALAVLYSSGDSTFWQLSN----GRIHLDYRS 374 (1062)
T ss_pred eEEEee--chhcc------------------------cceeecCCCChhhhhhhhhcchhHHHhhhc----CCcCccccc
Confidence 111111 10000 000111222 22333334457788888863 111110000
Q ss_pred CCCCCcccEEEEEEecCC-----ceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCC
Q 001343 759 ESTDTSSKVVRLLYTNSA-----VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEA 833 (1096)
Q Consensus 759 ~~~~~~~~i~~l~~s~~~-----~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~ 833 (1096)
+ ...-+..+.|.... ..++.-+.|| ..+.|...... ++...-......+| +.
T Consensus 375 ~---~iel~~pf~f~~~~~~v~k~~l~~LS~dg-----------~h~sGs~~~~~-----~p~p~~t~~~~~p~----~n 431 (1062)
T KOG1912|consen 375 S---SIELVLPFDFNLSTKLVGKTSLISLSDDG-----------SHSSGSTCVRM-----RPMPELTKVENDPG----GN 431 (1062)
T ss_pred c---cccccccccccCceeehhhccccchhhcC-----------CCCCCceeeec-----ccCcccceeecCCC----CC
Confidence 0 00111111111110 1122222222 11111111000 00000000000000 00
Q ss_pred eeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEe---------eCCCeEEEEeec
Q 001343 834 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG---------TEDSTIHIYNVR 903 (1096)
Q Consensus 834 v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~---------~~dg~i~iw~~~ 903 (1096)
...+. --++|.|. .|+|.++|+.++...+.+..|.+.|.++.|.. ...++-.+ +.-+.+.+-|+.
T Consensus 432 ~~~~~----~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~sslvSfsys~~n~~sg~vrN~l~vtdLr 506 (1062)
T KOG1912|consen 432 TPAGT----VPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSSLVSFSYSHVNSASGGVRNDLVVTDLR 506 (1062)
T ss_pred cccee----eeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc-ceeEEEeeeccccccccceeeeEEEEEcc
Confidence 00011 03677887 59999999999999999999999999999976 44433222 223456777888
Q ss_pred cceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEE
Q 001343 904 VDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAV 982 (1096)
Q Consensus 904 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~ 982 (1096)
+|. .+..+.+.+...++|..+..|..|++|+. -.+.-+.+||+++..+++.+-.. ---|+.+.
T Consensus 507 tGl-------------sk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a---~P~it~le 570 (1062)
T KOG1912|consen 507 TGL-------------SKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLA---LPLITVLE 570 (1062)
T ss_pred ccc-------------ccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhc---CCcEEEEe
Confidence 775 22333333333369999999999999999 78999999999988877766432 23388889
Q ss_pred Ee
Q 001343 983 YS 984 (1096)
Q Consensus 983 ~s 984 (1096)
|+
T Consensus 571 Ws 572 (1062)
T KOG1912|consen 571 WS 572 (1062)
T ss_pred ec
Confidence 98
No 180
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.77 E-value=3.4e-17 Score=159.58 Aligned_cols=382 Identities=12% Similarity=0.126 Sum_probs=243.0
Q ss_pred EEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEE-EcCCeEEEEeCCCCeEEE
Q 001343 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILT 621 (1096)
Q Consensus 543 ~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~ 621 (1096)
-.+|||+|++++++. +-.+.|-|..+-+..+.|..-. .|.-+.|..+..+++++ ..++.|.+|++...+...
T Consensus 13 ~c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEEeecceeEE
Confidence 367999999999997 5588888888877766665543 35558888888777765 578899999999888887
Q ss_pred EeecCCCCCCccEEEEeCCCCE-EEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCc
Q 001343 622 STDAEGGLPNLPRLRFSKEGNL-LAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1096)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~ 700 (1096)
.+..... .+..+.|||||+. |.+...|-.|.+|.+.+..-..-... ...+..++|+|||++.+.....+.
T Consensus 86 kIdeg~a--gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p-------K~~~kg~~f~~dg~f~ai~sRrDC 156 (447)
T KOG4497|consen 86 KIDEGQA--GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP-------KTNVKGYAFHPDGQFCAILSRRDC 156 (447)
T ss_pred EeccCCC--cceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc-------ccCceeEEECCCCceeeeeecccH
Confidence 7765544 8999999999954 55566789999999987632222221 123457899999998744433221
Q ss_pred eeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEE
Q 001343 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 780 (1096)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 780 (1096)
.. + +.- -.-+-|.+- +.+.. ..-..+.+.|+|||..++
T Consensus 157 kd------------y--------------v~i---~~c~~W~ll-----~~f~~--------dT~DltgieWsPdg~~la 194 (447)
T KOG4497|consen 157 KD------------Y--------------VQI---SSCKAWILL-----KEFKL--------DTIDLTGIEWSPDGNWLA 194 (447)
T ss_pred HH------------H--------------HHH---HhhHHHHHH-----HhcCC--------CcccccCceECCCCcEEE
Confidence 11 0 000 001123322 11111 334567799999998655
Q ss_pred Eeec--CCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEE
Q 001343 781 ALGS--NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLF 857 (1096)
Q Consensus 781 ~~~~--dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iw 857 (1096)
+-.+ +-.|..|. -.-.+..++|+|.+++||+|+ |+.++|.
T Consensus 195 Vwd~~Leykv~aYe-------------------------------------~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 195 VWDNVLEYKVYAYE-------------------------------------RGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred Eecchhhheeeeee-------------------------------------eccceeEEEeccccceEEeeccchhhhhh
Confidence 4332 11111111 234678899999999999999 8999987
Q ss_pred EcccceEEEeecCCCCCe--------------------eEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeecccccc
Q 001343 858 NMMTFKVMTTFMSPPPAS--------------------TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEK 917 (1096)
Q Consensus 858 d~~~~~~~~~~~~h~~~i--------------------~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~ 917 (1096)
+--+.+....+ .|...+ .++.|.| .|-...+|..+... +......
T Consensus 238 nh~tWk~f~ef-lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p----------~~~~a~~~~~se~~---YE~~~~p- 302 (447)
T KOG4497|consen 238 NHFTWKPFGEF-LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTP----------TDLEAHIWEESETI---YEQQMTP- 302 (447)
T ss_pred ceeeeeehhhh-ccchhccCchhhhhhhhhcchhhhcccccccCC----------CccccCccccchhh---hhhhhcc-
Confidence 76565554443 222111 1344444 12223344333211 0000000
Q ss_pred ccceeee---cCCCCCCCCCceEEEecCCcEEEEEe---cceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEE
Q 001343 918 RKSVTIH---IPAGKTPTGDTRVQFNADQVRMLVVH---ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVF 991 (1096)
Q Consensus 918 ~~~~~~~---~~~~~~~~~v~~v~fs~dg~~l~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la 991 (1096)
.....++ ...... ..+.-++||+|..++++-. -..+.+||++..+.-..+.. ..+|.+..|.|....|+
T Consensus 303 v~~~~lkp~tD~pnPk-~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ----k~piraf~WdP~~prL~ 377 (447)
T KOG4497|consen 303 VKVHKLKPPTDFPNPK-CGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ----KHPIRAFEWDPGRPRLV 377 (447)
T ss_pred eeeecccCCCCCCCcc-cccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh----ccceeEEEeCCCCceEE
Confidence 0001111 111111 3788899999999999943 45799999998887666654 56799999999998888
Q ss_pred EEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCc
Q 001343 992 ATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGS 1053 (1096)
Q Consensus 992 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~ 1053 (1096)
++.....+++|........+.-. -.-.|. .+.|.- +|..++..+.|..
T Consensus 378 vctg~srLY~W~psg~~~V~vP~-----------~GF~i~--~l~W~~-~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 378 VCTGKSRLYFWAPSGPRVVGVPK-----------KGFNIQ--KLQWLQ-PGEFIVLCGKDAF 425 (447)
T ss_pred EEcCCceEEEEcCCCceEEecCC-----------CCceee--eEEecC-CCcEEEEEcCCce
Confidence 88888889999877644443322 123566 489987 8999999888864
No 181
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=3e-18 Score=194.71 Aligned_cols=261 Identities=12% Similarity=0.144 Sum_probs=202.7
Q ss_pred eEEeecCCCceEEEEEcCCCCc---EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEE
Q 001343 337 VAVSLHQGSTVISMDFHPSHQT---LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1096)
Q Consensus 337 ~~~~l~h~~~V~~v~fsp~g~~---llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1096)
.+-.+.-...-+.++|.+.|.. ++|.|..||.|.+||...- +..... . ....+..|++.|..+.
T Consensus 57 ~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~~~~~----------~-~la~~~~h~G~V~gLD 123 (1049)
T KOG0307|consen 57 PVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IANASE----------E-VLATKSKHTGPVLGLD 123 (1049)
T ss_pred ccccccccccceeeeecccCCCccceeeccccCCceEEecchhh--ccCcch----------H-HHhhhcccCCceeeee
Confidence 4455666778899999999886 6999999999999998652 100000 0 0112667999999999
Q ss_pred EcCCCC-EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEee
Q 001343 414 WSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1096)
Q Consensus 414 ~spd~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~ 491 (1096)
|++... .||+|+.||.|.|||++.-+...... -....+.|.+++|+..-.. +|++++.+|.+.||| ...+.+-.+.
T Consensus 124 fN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls 201 (1049)
T KOG0307|consen 124 FNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLS 201 (1049)
T ss_pred ccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccc
Confidence 999654 99999999999999998754333211 1235678999999987765 899999999999999 6667777776
Q ss_pred CCCC--CeEEEEeeecCCCcEEEEEECC---CeEEEEEcCCCCe-eeEEeCCCCcEEEEEEcCCC-CEEEEEeeccCCCC
Q 001343 492 GHEA--PVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDS 564 (1096)
Q Consensus 492 ~~~~--~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~-~~l~~~~~~~~~~~ 564 (1096)
.+.. .+..+.|||+... .|++++.| -.|.+||++.... ...+..|...|.++.|++.+ .++++++. |+
T Consensus 202 ~~~~~~~~S~l~WhP~~aT-ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~ 276 (1049)
T KOG0307|consen 202 DTPGRMHCSVLAWHPDHAT-QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DN 276 (1049)
T ss_pred cCCCccceeeeeeCCCCce-eeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CC
Confidence 5554 4778999998654 45555544 3699999986544 45678999999999999877 78888887 99
Q ss_pred eEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCC-EEEEEEcCCeEEEEeCCCCe
Q 001343 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 618 (1096)
.|.+|+.++++.+..+....+ .+..+.|+|... .+++++-||.|.||.+.+..
T Consensus 277 ~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 277 RIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999999999999988544 788899999775 77788999999999987644
No 182
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=2e-18 Score=187.75 Aligned_cols=278 Identities=17% Similarity=0.268 Sum_probs=215.4
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC
Q 001343 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1096)
Q Consensus 340 ~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~ 419 (1096)
.++|.++|.|+.|...|. ++++|+.|..|+||..+++.++.+ +.||.+.|+.++.+.+..
T Consensus 186 LlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~~n~ 245 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSSNNT 245 (1113)
T ss_pred HHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccchhhh
Confidence 357999999999999999 599999999999999999998865 889999999999999999
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceE-EE---eeCC-C
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-FN---FEGH-E 494 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~-~~---~~~~-~ 494 (1096)
++|+++.|..|++|.+.++..+. .+.||++.|++++|+|- .+.+.||++++||..-..+ .. ++.. .
T Consensus 246 ~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~ 316 (1113)
T KOG0644|consen 246 MIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEK 316 (1113)
T ss_pred hhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCcccc
Confidence 99999999999999999988777 68899999999999985 3678899999999332221 11 1111 1
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCC-EEEEEeeccCCCCeEEEEeCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
.-+.++.| ..++..+++|+.|+.-+.|.+..... +...+.-+..+.+.. +.++.-. +..+.+|++.+
T Consensus 317 ~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~----~~~~~vwnl~~ 384 (1113)
T KOG0644|consen 317 DLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARN----DHRLCVWNLYT 384 (1113)
T ss_pred cceeeeec--cccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeeee----eeEeeeeeccc
Confidence 23444444 33567789999999998886542211 111112222222222 3333333 77889999999
Q ss_pred CeeeEEEcCcCccceEEEEEeCCCCE-EEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCc
Q 001343 574 GTIKRTYAGFRKKSNGVVQFDTTQNH-FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1096)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 652 (1096)
|...+.+.+|.. .+..+.++|-+.. ..+++.||...|||+-.|.+++..... ...+....|+++|..++...+-|.
T Consensus 385 g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~lsd~hgq 461 (1113)
T KOG0644|consen 385 GQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIALSDDHGQ 461 (1113)
T ss_pred chhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc--cceeeccccCCCCceEecCCCCCc
Confidence 999999999988 8888999996654 457889999999999999888877643 237788899999999999888899
Q ss_pred EEEEEcCCC
Q 001343 653 FKILANAIG 661 (1096)
Q Consensus 653 i~iwd~~~~ 661 (1096)
+.|.....+
T Consensus 462 l~i~g~gqs 470 (1113)
T KOG0644|consen 462 LYILGTGQS 470 (1113)
T ss_pred eEEeccCCC
Confidence 999876544
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=5.1e-16 Score=145.09 Aligned_cols=280 Identities=17% Similarity=0.235 Sum_probs=193.8
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~ 425 (1096)
.|.+-+++|.++ +|+.|..+|.|.+..+..-..-... .....+.-...+|.++|+.++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~---------~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAE---------PPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccC---------CCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 577789999999 6999999999999998642111000 00000111247899999999998 45777775
Q ss_pred CCCeEEEEEccCCCc---ccccee--ecccc-----cCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCC
Q 001343 426 TKHLIQLYSYAGSND---LRQHSQ--IDAHV-----GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1096)
Q Consensus 426 ~dg~i~vwd~~~~~~---~~~~~~--l~~h~-----~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~ 494 (1096)
||.|+-|....... .+.+.+ ...|. -.|++|...|..+ -++.++.|+.++-|| .+|+..+.++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 59999998764322 111111 12233 3688999998877 466666899999999 9999999999999
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC----------CCcEEEEEEcCCCCEEEEEeeccCCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----------GHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------~~~i~~l~~s~~~~~l~~~~~~~~~~~ 564 (1096)
+.|.++.-.. ....+++|++||++|+||.++.+.+..+... +.+|.+++.+ ...+++|+ ..
T Consensus 157 DYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-----Gp 227 (325)
T KOG0649|consen 157 DYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-----GP 227 (325)
T ss_pred ceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-----CC
Confidence 9999998632 2347899999999999999999887654322 2256666654 55888876 67
Q ss_pred eEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCC-CE
Q 001343 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG-NL 643 (1096)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~ 643 (1096)
.+.+|.++..++...|.-.. .+..+.|. ...+++++..+.|.-|.+ +|..........+ ..++..|+... +.
T Consensus 228 ~lslwhLrsse~t~vfpipa--~v~~v~F~--~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~--~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPA--RVHLVDFV--DDCVLIGGEGNHVQSYTL-NGVLQANIPVEST--ACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEeccc--ceeEeeee--cceEEEeccccceeeeee-ccEEEEeccCCcc--ceeeecccCCceEE
Confidence 89999999988888776432 45556674 457888888889999987 4555554544433 45555665443 34
Q ss_pred EEEEECCCcEEEE
Q 001343 644 LAVTTADNGFKIL 656 (1096)
Q Consensus 644 l~~~~~dg~i~iw 656 (1096)
|-.++..+.+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4445555555554
No 184
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.75 E-value=1.6e-17 Score=157.20 Aligned_cols=283 Identities=17% Similarity=0.215 Sum_probs=197.1
Q ss_pred EEee-cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccc-cCCCCEEEEEEc
Q 001343 338 AVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWS 415 (1096)
Q Consensus 338 ~~~l-~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~s 415 (1096)
.+.+ .|.+.|+|+.|-.+++ |.+|...|.|++|++++.+.+.. +. .|...|+.+.--
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~lq~~ 65 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITNLQSI 65 (323)
T ss_pred eeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeeceeec
Confidence 4444 4999999999999986 77899999999999998776532 33 367789999888
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC-cE-----------EEEE-c
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-LI-----------KVWE-L 482 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~-~i-----------~iwd-~ 482 (1096)
|+ ..|.+-+.|+.+.+|++..+..+. -|.-.++++.|.+.. +...+... .. .+-| -
T Consensus 66 p~-d~l~tqgRd~~L~lw~ia~s~~i~------i~Si~~nslgFCrfS----l~~~~k~~eqll~yp~rgsde~h~~D~g 134 (323)
T KOG0322|consen 66 PN-DSLDTQGRDPLLILWTIAYSAFIS------IHSIVVNSLGFCRFS----LVKKPKNSEQLLEYPSRGSDETHKQDGG 134 (323)
T ss_pred CC-cchhhcCCCceEEEEEccCcceEE------Eeeeeccccccccce----eccCCCcchhheecCCcccchhhhhccC
Confidence 87 567788899999999998754332 355556666665421 12111111 11 1111 0
Q ss_pred CCceEEEe----eCCCCCeEEEEeeecCCC-cEEEEEECCCeEEEEEcCCCCeeeE----------EeCCCCcEEEEEEc
Q 001343 483 SGRKLFNF----EGHEAPVYSICPHHKENI-QFIFSTAIDGKIKAWLYDTMGSRVD----------YDAPGHWCTTMLYS 547 (1096)
Q Consensus 483 ~~~~~~~~----~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~----------~~~~~~~i~~l~~s 547 (1096)
....+... .+..+.+.+..+...... -++++|.++|.+.+||+.++..... ...|..+|.++.+.
T Consensus 135 ~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya 214 (323)
T KOG0322|consen 135 DTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA 214 (323)
T ss_pred ccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec
Confidence 11111111 123445666554332222 3567788899999999998744432 34566688999988
Q ss_pred CCCCEEEEEeeccCCCCeEEEEeCCC--Cee-eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEee
Q 001343 548 ADGSRLFSCGTSKDGDSFLVEWNESE--GTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1096)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~iwd~~~--~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1096)
+.-..=++++. +..+..|++.. +.+ ++.........+..+.+-||++.+++++-|+.|+||+.++..++..+.
T Consensus 215 s~~~rGisgga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk 290 (323)
T KOG0322|consen 215 SSCDRGISGGA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK 290 (323)
T ss_pred hhhcCCcCCCc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh
Confidence 76555555554 66777787653 221 122222222357778899999999999999999999999999999999
Q ss_pred cCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 625 AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 625 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
.|.. .|++++|+|+..++|.++.|+.|.+|++
T Consensus 291 yHsa--gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 291 YHSA--GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhc--ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 8875 8999999999999999999999999986
No 185
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=7.7e-17 Score=158.58 Aligned_cols=271 Identities=11% Similarity=0.135 Sum_probs=194.1
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC--CCCEEEEEECCCeEEEEEcc
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGNYVGVAFTKHLIQLYSYA 436 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~l~s~~~dg~i~vwd~~ 436 (1096)
.+|++...|.|++||..+++.+.. +++|...++.+.|.. ....+.+|+.||+|++||+.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 688899999999999999887754 788899999999987 46788999999999999999
Q ss_pred CCCccccceeecccc-cCEEEEEEecCCCcEEEEEEe----CCCcEEEEE-cCCce-EEEe-eCCCCCeEEEEeeecCCC
Q 001343 437 GSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCG----DDKLIKVWE-LSGRK-LFNF-EGHEAPVYSICPHHKENI 508 (1096)
Q Consensus 437 ~~~~~~~~~~l~~h~-~~v~~l~~s~d~~~~~l~s~s----~d~~i~iwd-~~~~~-~~~~-~~~~~~v~~~~~~~~~~~ 508 (1096)
+......+ ...+|. .+..+++..-.++ .+++|. .|-.|.+|| ...+. +..+ ..|...|+++.|+|+. .
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~-p 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD-P 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC-C
Confidence 87665543 345565 4667777765666 677664 467899999 54443 5554 5799999999999984 5
Q ss_pred cEEEEEECCCeEEEEEcCCCCe---eeEEeCCCCcEEEEEEcCCC-CEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC
Q 001343 509 QFIFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1096)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 584 (1096)
++|++|+.||.|.+||+..... +.....+...|..+.|..++ +.+.+.+. .....+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 7999999999999999875432 22334556679999999887 34555554 7889999999887655443321
Q ss_pred c------------cceEEEEEeC-CCCEEEEEEc-CCeEEEEeCC---CC---eEEEEeecCCCCCCccEEEEeCCCCEE
Q 001343 585 K------------KSNGVVQFDT-TQNHFLAVGE-DSQIKFWDMD---NV---NILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1096)
Q Consensus 585 ~------------~~i~~~~~~~-~~~~l~~~~~-dg~i~iwd~~---~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l 644 (1096)
- ..|. +.+| ++..++.++. -+...++-+. ++ +.+..+.++ +...|+++.|...+.++
T Consensus 255 ~~~~d~r~~~~~dY~I~--~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~-~~eiVR~i~~~~~~~~l 331 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVIN--EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG-HEEIVRDILFDVKNDVL 331 (376)
T ss_pred chhhhHHhhhhhhheee--cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCC-cHHHHHHHhhhccccee
Confidence 0 0111 2223 3344444443 5555555443 23 233344432 34478899999899999
Q ss_pred EEEECCCcEEEEEcC
Q 001343 645 AVTTADNGFKILANA 659 (1096)
Q Consensus 645 ~~~~~dg~i~iwd~~ 659 (1096)
.+|+.||.+.+|...
T Consensus 332 ~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 332 YTGGEDGLLQAWKVE 346 (376)
T ss_pred eccCCCceEEEEecC
Confidence 999999999999863
No 186
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=1.2e-17 Score=175.10 Aligned_cols=250 Identities=14% Similarity=0.169 Sum_probs=189.5
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcc-----CCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYA-----GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~-----~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~ 475 (1096)
.+..|...|..++|.|-...|++|+.||.|++|+++ ....+..+.++.+|.++|.|++..+++. .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 366799999999999999999999999999999993 2344667778999999999999999999 899999999
Q ss_pred cEEEEE-c------CC----ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC--CCCcEE
Q 001343 476 LIKVWE-L------SG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--PGHWCT 542 (1096)
Q Consensus 476 ~i~iwd-~------~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~ 542 (1096)
+|+.|+ . +. .....+.||.+.|+.++++... ..|++++.||+++.|+...... ..+.. ..+...
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999995 1 11 2345678999999999998765 5799999999999998765554 22222 222344
Q ss_pred EEEEcCCCCE-EEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC------ccceEEEEEeCCCCEEEEEEcCCeEEEEeCC
Q 001343 543 TMLYSADGSR-LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1096)
Q Consensus 543 ~l~~s~~~~~-l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1096)
++.+...... .++... .+.-.+.+...+..+..+.... ...+..+..+|.+...+++.+|+.|+++|..
T Consensus 444 svd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred eEeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 5555333211 222111 2222334444444444433211 1245567888999999999999999999999
Q ss_pred CCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
++.++.....+.. .++++++.|+|.+|++++.|+.+++|.+...
T Consensus 520 ~~~~l~s~~a~~~--svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 520 TGKILHSMVAHKD--SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccccchheeeccc--eecceeecCCCceEEeecCCceeehhhccch
Confidence 9999988887755 8999999999999999999999999998655
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.2e-16 Score=157.20 Aligned_cols=288 Identities=14% Similarity=0.165 Sum_probs=195.0
Q ss_pred EEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE--eCCC-CcEE
Q 001343 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY--DAPG-HWCT 542 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~-~~i~ 542 (1096)
.++++-..|+|++|| .+++.+..++++...++.+.|.....++.+.+++.||+|++||++.......+ ..+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 688888899999999 88999999999999999999976545678999999999999999987665433 3333 3677
Q ss_pred EEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee-eEEEc-CcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCCCe-
Q 001343 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI-KRTYA-GFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVN- 618 (1096)
Q Consensus 543 ~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~-~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~- 618 (1096)
+++....++.++++..-...+..+.+||++..+. ++.+. .|.+ .|++++|+|+. +.|++|+.||.|.+||++...
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D-DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND-DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC-cceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 8887778888888876555578999999998765 66654 4555 89999999954 789999999999999997642
Q ss_pred ---EEEEeecCCCCCCccEEEEeCCC-CEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecC-CCeEE
Q 001343 619 ---ILTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS-ASSAV 693 (1096)
Q Consensus 619 ---~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~lv 693 (1096)
++.++. +...|.++.|..++ +.|.+-+...++.+|+++.+.. ...+........ .....+ -.+++
T Consensus 201 eDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~-~~~~~~~~~~~~------d~r~~~~~dY~I 270 (376)
T KOG1188|consen 201 EDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE-ETWLENPDVSAD------DLRKEDNCDYVI 270 (376)
T ss_pred hhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh-hhcccCccchhh------hHHhhhhhhhee
Confidence 222222 22368999999877 5688889999999999988842 222221100000 000000 01111
Q ss_pred ecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCC-CCCccceeeeee--ecCCceEEEEcCCCCCCcccEEEE
Q 001343 694 SSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDV-TDKPKPWQLAEI--VDSGQCRLVTMPESTDTSSKVVRL 770 (1096)
Q Consensus 694 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~-dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l 770 (1096)
-... -.++...+.++. -+...++-+... ........ .+.| +|..-|+++
T Consensus 271 ~~~~-------------------------~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a-~l~g--~~~eiVR~i 322 (376)
T KOG1188|consen 271 NEHS-------------------------PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPA-ILQG--GHEEIVRDI 322 (376)
T ss_pred eccc-------------------------CCCcceEEEeccccCceeEEEeeecccccccCccc-cccC--CcHHHHHHH
Confidence 1111 011222222222 355555544321 11111111 2222 266778899
Q ss_pred EEecCCceEEEeecCCeEEEeec
Q 001343 771 LYTNSAVGLLALGSNGVQKLWKW 793 (1096)
Q Consensus 771 ~~s~~~~~l~~~~~dg~v~vw~~ 793 (1096)
.|...+..+.+++.||.+.+|..
T Consensus 323 ~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 323 LFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred hhhcccceeeccCCCceEEEEec
Confidence 99988888999999999999995
No 188
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=5.8e-16 Score=148.50 Aligned_cols=259 Identities=20% Similarity=0.316 Sum_probs=183.4
Q ss_pred CCCceeecCCccHHHHHhhcCCCC-CCCceeecCCCce-------------------eeecCCCC-------cceEEeec
Q 001343 290 PTPGMVDYQNPDHEQLMKRLRPAP-SAEEVTYSSSRHQ-------------------TWSLDDLP-------RTVAVSLH 342 (1096)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~-------------------~~~~~~~~-------~~~~~~l~ 342 (1096)
.++..+.++....+-..+.+..++ .++.++-++.... +|.+...- -+++..|.
T Consensus 40 NqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ld 119 (370)
T KOG1007|consen 40 NQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLD 119 (370)
T ss_pred ceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCC
Confidence 445566666666555555554433 2333333332221 77765322 23444444
Q ss_pred --CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC--CC
Q 001343 343 --QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DG 418 (1096)
Q Consensus 343 --h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~ 418 (1096)
+-+.|.|+.|.|++.. +|+- .|..|.+|++..+..+.. .+ ....-.+|....++-+||| ||
T Consensus 120 teavg~i~cvew~Pns~k-lasm-~dn~i~l~~l~ess~~va-ev------------~ss~s~e~~~~ftsg~WspHHdg 184 (370)
T KOG1007|consen 120 TEAVGKINCVEWEPNSDK-LASM-DDNNIVLWSLDESSKIVA-EV------------LSSESAEMRHSFTSGAWSPHHDG 184 (370)
T ss_pred HHHhCceeeEEEcCCCCe-eEEe-ccCceEEEEcccCcchhe-ee------------cccccccccceecccccCCCCcc
Confidence 5569999999999996 5554 599999999998776321 11 1111223666788889999 78
Q ss_pred CEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceEEEeeCCCCC
Q 001343 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAP 496 (1096)
Q Consensus 419 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~~~~~ 496 (1096)
+.+++. .|+++..||+.+.++...+ -.+|...|..+.|+|+.+. +|++|+.||.|++|| ....++..+.+|...
T Consensus 185 nqv~tt-~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW 260 (370)
T KOG1007|consen 185 NQVATT-SDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW 260 (370)
T ss_pred ceEEEe-CCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccccCCCceE
Confidence 888876 4789999999987766543 3478899999999999887 899999999999999 667789999999999
Q ss_pred eEEEEeeecCCCcEEEEEECCCeEEEEEcCCCC-----------------------------eeeEEeCCCCcEEEEEEc
Q 001343 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-----------------------------SRVDYDAPGHWCTTMLYS 547 (1096)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~i~~l~~s 547 (1096)
|+++.|+|..+ ++|++|+.|..|.+|....-. .+..+..|...|++++||
T Consensus 261 vW~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS 339 (370)
T KOG1007|consen 261 VWAVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS 339 (370)
T ss_pred EEEEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec
Confidence 99999999865 799999999999999653211 112455667789999998
Q ss_pred CCCCEEEEEeeccCCCCeEEEEeC
Q 001343 548 ADGSRLFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~iwd~ 571 (1096)
.-...+++.-. .||.+.|=.+
T Consensus 340 sadPWiFASLS---YDGRviIs~V 360 (370)
T KOG1007|consen 340 SADPWIFASLS---YDGRVIISSV 360 (370)
T ss_pred cCCCeeEEEec---cCceEEeecC
Confidence 87776654332 2777766443
No 189
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=1.2e-17 Score=181.86 Aligned_cols=266 Identities=15% Similarity=0.197 Sum_probs=202.2
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+.+|.+.|.|+.|...|.++++|+.|..++||..+++.++. ...||.+.|+.++.+.++. +++++|.|..|++|.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVWR 260 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEEe
Confidence 78999999999999999999999999999999999988877 6889999999999998887 899999999999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeE---Ee-CCCCcEEEEEEcCCCCEEEEE
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD---YD-APGHWCTTMLYSADGSRLFSC 556 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~-~~~~~i~~l~~s~~~~~l~~~ 556 (1096)
..+.++..+.||++.|++++|+|-. +.+.||++++||.+-...... .. ....-+.++.|-..+..++++
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 9999999999999999999998843 778999999999882111111 11 122356777787888888888
Q ss_pred eeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEE
Q 001343 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1096)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1096)
+. ++.-..|..... ..+.. .+.-+..+.+- .+.+++-.+..+++|++.+|.+.+.+.++.+ .+..+
T Consensus 335 s~----d~ea~n~e~~~l------~~~~~-~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yvL 401 (1113)
T KOG0644|consen 335 SR----DGEARNHEFEQL------AWRSN-LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYVL 401 (1113)
T ss_pred cC----CcccccchhhHh------hhhcc-ceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc--ceeee
Confidence 76 555555544311 11111 11111222122 4556666788999999999999999998877 88999
Q ss_pred EEeC-CCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCC
Q 001343 636 RFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (1096)
Q Consensus 636 ~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s 697 (1096)
.++| +.....+++.||...|||+-.|........+ ...+-...||++|..++..-.
T Consensus 402 d~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g------h~kl~d~kFSqdgts~~lsd~ 458 (1113)
T KOG0644|consen 402 DVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG------HGKLVDGKFSQDGTSIALSDD 458 (1113)
T ss_pred eecCCCcHhhhhccCCCceEeeecccCCcceeeecc------cceeeccccCCCCceEecCCC
Confidence 9999 5667778999999999999888433322222 233445688888887755533
No 190
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=1.4e-15 Score=169.60 Aligned_cols=269 Identities=15% Similarity=0.197 Sum_probs=202.6
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1096)
+|++.+. ......+.-...|+|++|+|....++|.|..+|.|.+||+..+.......+ ......|.
T Consensus 226 vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~l-------------s~~~~sh~ 291 (555)
T KOG1587|consen 226 VWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGL-------------SALEVSHS 291 (555)
T ss_pred EEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccc-------------ccccccCC
Confidence 8999887 777888889999999999999988999999999999999988775311000 01245689
Q ss_pred CCEEEEEEcCCC--CEEEEEECCCeEEEEEccCCCccccceee--c-------ccccCEEEEEEecCCCcEEEEEEeCCC
Q 001343 407 ISVSRVAWSPDG--NYVGVAFTKHLIQLYSYAGSNDLRQHSQI--D-------AHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1096)
Q Consensus 407 ~~V~~l~~spd~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~l--~-------~h~~~v~~l~~s~d~~~~~l~s~s~d~ 475 (1096)
.+|+.+.|-.+. .-+++++.||.|..|+++.-........+ . .-...+++++|.+.... .++.|+++|
T Consensus 292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G 370 (555)
T KOG1587|consen 292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEG 370 (555)
T ss_pred cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCc
Confidence 999999998754 44999999999999987653321111001 1 12347899999998776 789999999
Q ss_pred cEEEEE-c--CCce------EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcC-CCCeeeEEeCCCCcEEEEE
Q 001343 476 LIKVWE-L--SGRK------LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGSRVDYDAPGHWCTTML 545 (1096)
Q Consensus 476 ~i~iwd-~--~~~~------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~ 545 (1096)
.|.--+ . +... ...+..|.++|+++.++|-.. ..+++++ |.+++||... ....+..+..+...+++++
T Consensus 371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~va 448 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVA 448 (555)
T ss_pred EEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeE
Confidence 998844 2 2122 345667899999999987543 3444555 9999999887 6666677777777899999
Q ss_pred EcCCCCEEEEEeeccCCCCeEEEEeCCC--CeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 546 YSADGSRLFSCGTSKDGDSFLVEWNESE--GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~iwd~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
|||....++++.. ++|.|.+||+.. ..++.+.... ......+.|+++|..+++|...|.+.+|++..
T Consensus 449 WSptrpavF~~~d---~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 449 WSPTRPAVFATVD---GDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EcCcCceEEEEEc---CCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9998877666553 499999999864 3344444433 33667788999999999999999999999864
No 191
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=1.5e-15 Score=145.78 Aligned_cols=230 Identities=15% Similarity=0.192 Sum_probs=174.2
Q ss_pred EEEEEE----CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC-------CcEEEEE-cCC---
Q 001343 420 YVGVAF----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-------KLIKVWE-LSG--- 484 (1096)
Q Consensus 420 ~l~s~~----~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d-------~~i~iwd-~~~--- 484 (1096)
.+++|. .|+.|.+.+++.+........+..|.+.|+.++-+|-.+. +|+|+..+ ..+.||. ...
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~-ilaT~yn~~s~s~vl~~aaiw~ipe~~~~ 106 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQR-ILATVYNDTSDSGVLTGAAIWQIPEPLGQ 106 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCc-eEEEEEeccCCCcceeeEEEEecccccCc
Confidence 444554 3578888877765443333467789999999999998876 67777653 2467898 221
Q ss_pred ------ceEEEee-CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCee-eEEe-----CCCCcEEEEEEcC--C
Q 001343 485 ------RKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-VDYD-----APGHWCTTMLYSA--D 549 (1096)
Q Consensus 485 ------~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~-----~~~~~i~~l~~s~--~ 549 (1096)
+++..+. .+-+.|.|+.|.| ++..+++.. |..|.+|+++....+ ..+. .+....++-+|+| +
T Consensus 107 S~~~tlE~v~~Ldteavg~i~cvew~P--ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHd 183 (370)
T KOG1007|consen 107 SNSSTLECVASLDTEAVGKINCVEWEP--NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHD 183 (370)
T ss_pred cccchhhHhhcCCHHHhCceeeEEEcC--CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCc
Confidence 1223333 4556899999988 556777766 889999999877663 2221 2344678889998 7
Q ss_pred CCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCC-EEEEEEcCCeEEEEeCCC-CeEEEEeecCC
Q 001343 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDN-VNILTSTDAEG 627 (1096)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~ 627 (1096)
|+.+++.+ ++++..||+++.+....+...++..+..+.|+|+.. +|+++++||.|+|||.+. ..++..+..|.
T Consensus 184 gnqv~tt~-----d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~Hs 258 (370)
T KOG1007|consen 184 GNQVATTS-----DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHS 258 (370)
T ss_pred cceEEEeC-----CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCc
Confidence 88888876 899999999999888888766666888999999875 567789999999999875 56788888888
Q ss_pred CCCCccEEEEeC-CCCEEEEEECCCcEEEEEcCC
Q 001343 628 GLPNLPRLRFSK-EGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 628 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
| .|.++.|+| ..+++.+++.|..|.+|....
T Consensus 259 H--WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 259 H--WVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred e--EEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 7 999999999 557889999999999997644
No 192
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=3.7e-14 Score=141.59 Aligned_cols=239 Identities=10% Similarity=0.091 Sum_probs=184.5
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC--CcEEEEE-c
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-L 482 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d--~~i~iwd-~ 482 (1096)
...+..+.|..|...|..|+.||. ++|+.+...... ........|.-+-|+.. ++|..+.+ +.+++.+ .
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~---~~~~~~~~IvEmLFSSS----LvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCF---SKDTEGVSIVEMLFSSS----LVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHHhh---cccCCCeEEEEeecccc----eeEEEecCCCceEEEEEcc
Confidence 446778889999999999999874 677776543321 12223345666667654 45554444 4589999 7
Q ss_pred CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC---CCcEEEEEEcCCCCEEEEEeec
Q 001343 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP---GHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
.+..+..+. ...+|.++.++. +.|+++-.+. |.|||+++.+.+.++... ...+.++.+++.+.+++.-+.
T Consensus 77 k~~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s- 149 (391)
T KOG2110|consen 77 KKTTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS- 149 (391)
T ss_pred cCceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC-
Confidence 777776665 456788998843 5677766554 999999998887765433 335777777777778886542
Q ss_pred cCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCe-EEEEeCCCCeEEEEeecCCCCCCccEEEEe
Q 001343 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
...|.|.+||..+-+.+..+..|.+ .+.+++|+++|.+|+++++.|+ |||+.+.+|+.+..++-......|.+++|+
T Consensus 150 -~t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 150 -TTSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred -CCCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 2378999999999999999999988 9999999999999999999886 799999999999998765555678999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCC
Q 001343 639 KEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
|++.+|++.+..++|++|.+...
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCeEEEecCCCeEEEEEeccc
Confidence 99999999999999999998654
No 193
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.71 E-value=2.3e-15 Score=147.06 Aligned_cols=227 Identities=15% Similarity=0.147 Sum_probs=174.7
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
-..+|+|.+|++|+. .+|++-....|.||.....+.-. ..+++..|...|++|.|+|..+.|+
T Consensus 9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence 456899999999999 69998889999999987765221 2345888999999999999999999
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceE-----EEeeCCCCCe
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-----FNFEGHEAPV 497 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~-----~~~~~~~~~v 497 (1096)
+|+.|..-+||....+...+...++..|+..++++.|+|.++ .|++||.-+.|.||-.+++.- +.-+.+...|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999855555555556788999999999999999 899999999999998333322 1234567789
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcC-----CC-------------CeeeEEeCCCCcEEEEEEcCCCCEEEEEeec
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYD-----TM-------------GSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-----~~-------------~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
++++|+| ++-++++|+.|+..|++..- .. +...++...++.+..+.|+|+|..|+-.+.
T Consensus 150 ~sldWhp--nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H- 226 (361)
T KOG1523|consen 150 TSLDWHP--NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH- 226 (361)
T ss_pred eeeeccC--CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-
Confidence 9999998 55799999999999999642 11 111233455678999999999999998887
Q ss_pred cCCCCeEEEEeCCCCe-eeEEEcCcCccceEEEEEeC
Q 001343 560 KDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDT 595 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~ 595 (1096)
+..+.+-|..... .+.......- +..++.|-.
T Consensus 227 ---ds~v~~~da~~p~~~v~~~~~~~l-P~ls~~~is 259 (361)
T KOG1523|consen 227 ---DSTVSFVDAAGPSERVQSVATAQL-PLLSVSWIS 259 (361)
T ss_pred ---CCceEEeecCCCchhccchhhccC-CceeeEeec
Confidence 8899998877654 2333322222 455555543
No 194
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=3.1e-16 Score=148.55 Aligned_cols=309 Identities=11% Similarity=0.118 Sum_probs=194.6
Q ss_pred eeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeE
Q 001343 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1096)
Q Consensus 530 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 609 (1096)
+.+.++.+...++++.|-.+++ |+++.. .|.+.+|++.+.+..-.+.++....+..+..-|+ ..+.+-+.|+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~----~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLS----VGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL 79 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccc----cceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE
Confidence 3455667888899999988776 666665 8999999999999988888776668888887776 678889999999
Q ss_pred EEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCC-cEEEEEcCCCccccccccCCCcccccCcceeEEeecC
Q 001343 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN-GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1096)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 688 (1096)
.+|++..+..+..-.. .++++.|.+-. +...+... ..-.++-+.... ....... ....+.+-++
T Consensus 80 ~lw~ia~s~~i~i~Si-----~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~D~g-------~~tqv~i~dd 144 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHSI-----VVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQDGG-------DTTQVQIADD 144 (323)
T ss_pred EEEEccCcceEEEeee-----eccccccccce--eccCCCcchhheecCCcccch-hhhhccC-------ccceeEccCc
Confidence 9999987655543321 34455554321 11111110 111111100000 0000000 0001111111
Q ss_pred CCeEEecCCCCceeEeccCCCcCCCcccCCC-CccCCCCCCccccCCCCCccceeeeeeecCCc-----eEEEEcCCCCC
Q 001343 689 ASSAVSSGTPANCKVERSSPVRPSPIINGVD-PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQ-----CRLVTMPESTD 762 (1096)
Q Consensus 689 g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~-----~~~~~~~~~~~ 762 (1096)
...- +....+ ..+ .......-+++.|..+|.+.+||+......-+ -..... ..
T Consensus 145 ~~~~-----------------Klgsvm-c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~---as 203 (323)
T KOG0322|consen 145 SERS-----------------KLGSVM-CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPN---AS 203 (323)
T ss_pred hhcc-----------------ccCcee-eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccch---hh
Confidence 0000 000000 000 00011112466888899999999984211000 011111 23
Q ss_pred CcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCC
Q 001343 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1096)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~d 842 (1096)
|..+|.++.|.+.-..=++++.+..+..|+++....+. .-+..+.. ..-.|..+.+-||
T Consensus 204 h~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl---------------q~~~e~~l------knpGv~gvrIRpD 262 (323)
T KOG0322|consen 204 HKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL---------------QIRKEITL------KNPGVSGVRIRPD 262 (323)
T ss_pred ccCcceeeeechhhcCCcCCCccccceeeeeccccCcc---------------cccceEEe------cCCCccceEEccC
Confidence 88899999998866556777777788888875432110 11111111 2334778999999
Q ss_pred CcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEee
Q 001343 843 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNV 902 (1096)
Q Consensus 843 g~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~ 902 (1096)
++.+|+++ |++|+||+.++...++.++.|.+.|.+++|+| +..++|.++.|++|.+|++
T Consensus 263 ~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 263 GKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred CcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 99999999 99999999999999999999999999999999 8899999999999999986
No 195
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1.9e-15 Score=169.18 Aligned_cols=307 Identities=17% Similarity=0.301 Sum_probs=212.4
Q ss_pred ccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCC---CCCeEEEEeeecCCCcEEEEEECCCeEEEEE
Q 001343 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH---EAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1096)
Q Consensus 449 ~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 524 (1096)
+....-..+.|+|-.. .++++...-.|++|| ..++.+..|..+ ...|+.+.+-...|..++++|+.||.||||+
T Consensus 1062 ~n~~~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred cCCCCCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 3444667788888888 788888888999999 899988877644 4568888887777788999999999999995
Q ss_pred cCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE
Q 001343 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (1096)
Q Consensus 525 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 604 (1096)
--.... ....|+++.. .-++. ..+..+ .-..+.|.....+|+++|
T Consensus 1140 ~y~~~~------------------~~~eLVTaw~------------~Ls~~----~~~~r~-~~~v~dWqQ~~G~Ll~tG 1184 (1387)
T KOG1517|consen 1140 DYADKW------------------KKPELVTAWS------------SLSDQ----LPGARG-TGLVVDWQQQSGHLLVTG 1184 (1387)
T ss_pred cccccc------------------CCceeEEeec------------ccccc----CccCCC-CCeeeehhhhCCeEEecC
Confidence 321100 1123333321 11110 111111 113356777677888888
Q ss_pred cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC-CCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeE
Q 001343 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (1096)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 683 (1096)
+-..|+|||.........+..... ..|+++.-+. .|+++++|..||.|++||......
T Consensus 1185 d~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-------------------- 1243 (1387)
T KOG1517|consen 1185 DVRSIRIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP-------------------- 1243 (1387)
T ss_pred CeeEEEEEecccceeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccCCc--------------------
Confidence 889999999999888888776543 3566665544 579999999999999999755411
Q ss_pred EeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCC
Q 001343 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDT 763 (1096)
Q Consensus 684 ~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 763 (1096)
|..|.+|.- |
T Consensus 1244 ---------------------------------------------------ds~v~~~R~-------------------h 1253 (1387)
T KOG1517|consen 1244 ---------------------------------------------------DSLVCVYRE-------------------H 1253 (1387)
T ss_pred ---------------------------------------------------cccceeecc-------------------c
Confidence 012222321 4
Q ss_pred ccc--EEEEEEecCCce-EEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeec
Q 001343 764 SSK--VVRLLYTNSAVG-LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1096)
Q Consensus 764 ~~~--i~~l~~s~~~~~-l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s 840 (1096)
... |..+.+.+.|-. +++++.+|.|++||+..... . ..+.....- ...+..+++..+
T Consensus 1254 ~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e------------------~~~~iv~~~-~yGs~lTal~VH 1313 (1387)
T KOG1517|consen 1254 NDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-E------------------TFLTIVAHW-EYGSALTALTVH 1313 (1387)
T ss_pred CCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-c------------------ccceeeecc-ccCccceeeeec
Confidence 444 777778776544 99999999999999854210 0 000000000 013368999999
Q ss_pred CCCcEEEEecCCeEEEEEcccceEEEeecCC-------CCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccc
Q 001343 841 KNDSYVMSATGGKISLFNMMTFKVMTTFMSP-------PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 905 (1096)
Q Consensus 841 ~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h-------~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~ 905 (1096)
++...+|+|+.+.|+||++ .|+.+..++.+ .+.+.|++|+| -.-++|+|+.|.+|.||.....
T Consensus 1314 ~hapiiAsGs~q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1314 EHAPIIASGSAQLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cCCCeeeecCcceEEEEec-ChhhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCc
Confidence 9999999999999999998 66666655533 35678999999 8889999999999999987654
No 196
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=5.7e-15 Score=141.99 Aligned_cols=284 Identities=14% Similarity=0.265 Sum_probs=202.7
Q ss_pred EEeecCCCceEEEEEc--CCCCcEEEEEeC----CCeEEEEecC--CCCeeecccceeecccccCccccccccccCCCCE
Q 001343 338 AVSLHQGSTVISMDFH--PSHQTLLLVGSS----NGEITLWELA--MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1096)
Q Consensus 338 ~~~l~h~~~V~~v~fs--p~g~~llasg~~----dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (1096)
+.+..-.-.+.++.|| |+.+..||.|+. .+.|.|-.+. +++.+.. --..|.-++
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~------------------a~fd~~YP~ 99 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED------------------ANFDHPYPV 99 (364)
T ss_pred EEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc------------------CCCCCCCCc
Confidence 3444445578889998 555567898874 3566665543 3443321 123588899
Q ss_pred EEEEEcCCCC-----EEEEEECCCeEEEEEccCCC-ccccce-----eecccccCEEEEEEecCCCcEEEEEEeCCCcEE
Q 001343 410 SRVAWSPDGN-----YVGVAFTKHLIQLYSYAGSN-DLRQHS-----QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 410 ~~l~~spd~~-----~l~s~~~dg~i~vwd~~~~~-~~~~~~-----~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~ 478 (1096)
+.+-|.|+.. +||+++ ..+++|.+...+ .+.... .-..+..++++..|+.-..+ +|.++|-|.+..
T Consensus 100 tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTCT 176 (364)
T KOG0290|consen 100 TKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTCT 176 (364)
T ss_pred cceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeEE
Confidence 9999999863 566654 389999987421 111111 12346779999999986665 899999999999
Q ss_pred EEE-cCC---ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEeCC--CCcEEEEEEcCCC-
Q 001343 479 VWE-LSG---RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAP--GHWCTTMLYSADG- 550 (1096)
Q Consensus 479 iwd-~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~--~~~i~~l~~s~~~- 550 (1096)
||| .+| .....+-.|...|..++|... .-+.+++.+.||.+|+||++..+.-. .+... ..+...++|++..
T Consensus 177 iWdie~~~~~~vkTQLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp 255 (364)
T KOG0290|consen 177 IWDIETGVSGTVKTQLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP 255 (364)
T ss_pred EEEEeeccccceeeEEEecCcceeEEEeccC-ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCc
Confidence 999 654 345678899999999999863 44789999999999999999765543 23322 3478888998754
Q ss_pred CEEEEEeeccCCCCeEEEEeCCC-CeeeEEEcCcCccceEEEEEeCC-CCEEEEEEcCCeEEEEeCCCCeE------EEE
Q 001343 551 SRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTT-QNHFLAVGEDSQIKFWDMDNVNI------LTS 622 (1096)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~------~~~ 622 (1096)
+++++... ....|.+.|++. ...+..+++|.. .|+.++|.|. ..+|.++|+|..+.+||+...-. +..
T Consensus 256 nymATf~~---dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 256 NYMATFAM---DSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred hHHhhhhc---CCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 56666544 266899999986 467888999988 8999999995 47899999999999999975322 112
Q ss_pred eecCCCCCCccEEEEeC-CCCEEEEEECC
Q 001343 623 TDAEGGLPNLPRLRFSK-EGNLLAVTTAD 650 (1096)
Q Consensus 623 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~d 650 (1096)
+. ....|+.+.|++ .+..++.+...
T Consensus 332 y~---a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 332 YT---AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred hh---ccceeeeeeecccCCCEEEEEecC
Confidence 22 233899999997 56677776543
No 197
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.6e-15 Score=151.09 Aligned_cols=309 Identities=11% Similarity=0.113 Sum_probs=217.6
Q ss_pred EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC------CCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC
Q 001343 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES------EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1096)
Q Consensus 533 ~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 606 (1096)
.+..|.+.|.++.|+.++++|++|+. +..+++|++. +.+++.....|+...|.+++|...+.++++|+.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGD----D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGD----DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCC----cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 44578889999999999999999997 8899999975 4566776666665689999999999999999999
Q ss_pred CeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEee
Q 001343 607 SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK 686 (1096)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 686 (1096)
++|...|+.+.+.+..+......+.|+.+..+|..+.+++.+.++.|.+||..........+-.... ......+.|+
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~---~~~F~t~~F~ 203 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS---GKNFYTAEFH 203 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCC---Cccceeeeec
Confidence 9999999999999999887777778999999999999999999999999998766322211111000 1112234444
Q ss_pred cCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCce--EEEEcCCCCCCc
Q 001343 687 VSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQC--RLVTMPESTDTS 764 (1096)
Q Consensus 687 ~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~ 764 (1096)
|-... ++++.+..+.+.+||......+-.. ....++. ..
T Consensus 204 P~~P~------------------------------------Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~---~~ 244 (609)
T KOG4227|consen 204 PETPA------------------------------------LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQ---EN 244 (609)
T ss_pred CCCce------------------------------------eEEeccccCCCCceeeccccchHHhhhccccCcc---cc
Confidence 43332 4566667788999998731111000 0111121 22
Q ss_pred ccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCcccccccccc----CCCcCCCeeeeeec
Q 001343 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVA----GVNLEEAVPCIALS 840 (1096)
Q Consensus 765 ~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~----g~~~~~~v~~l~~s 840 (1096)
..-.++.|+|.|.++++.-....-.+|++.. .+|....+. |......+.+++|.
T Consensus 245 ~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S----------------------~R~~V~k~D~N~~GY~N~~T~KS~~F~ 302 (609)
T KOG4227|consen 245 TEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS----------------------QRCFVLKSDHNPNGYCNIKTIKSMTFI 302 (609)
T ss_pred hhhhheeeCCCCCeehhhhccCCCEEeeeec----------------------ccceeEeccCCCCcceeeeeeeeeeee
Confidence 3346788999999998887765555666532 222211111 11134567788887
Q ss_pred CCCcEEEEecC-CeEEEEEccc-----c------------------eEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCe
Q 001343 841 KNDSYVMSATG-GKISLFNMMT-----F------------------KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDST 896 (1096)
Q Consensus 841 ~dg~~la~~~d-g~v~iwd~~~-----~------------------~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~ 896 (1096)
.|- .+++|+| =.|++|.+.. | +.+..+++|.+.+..+.|+| ...+|++.+-.+.
T Consensus 303 ~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~-H~~~l~SSGVE~~ 380 (609)
T KOG4227|consen 303 DDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ-HNNLLVSSGVENS 380 (609)
T ss_pred cce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC-CcceEeccchhhh
Confidence 654 4899996 5699998742 1 12356889999999999999 8889999999999
Q ss_pred EEEEeeccceeeeeeccc
Q 001343 897 IHIYNVRVDELCVWSIDT 914 (1096)
Q Consensus 897 i~iw~~~~~~~~~w~~~~ 914 (1096)
++||.-..- .|+++.
T Consensus 381 ~KlWS~~r~---P~~~D~ 395 (609)
T KOG4227|consen 381 FKLWSDHRL---PWSYDL 395 (609)
T ss_pred eeccccccC---CcccCC
Confidence 999975432 255544
No 198
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3.9e-15 Score=154.96 Aligned_cols=165 Identities=16% Similarity=0.179 Sum_probs=129.5
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
.+.||++-|+|+.|+.||.+|++|+.|-.+.|||.-..+.+..+ -.||...|.++.|-|....-.+++|..|+.|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 48999999999999999999999999999999999876666643 3499999999999997555489999999999999
Q ss_pred E-cC----------CceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee----------EEeCCCC
Q 001343 481 E-LS----------GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----------DYDAPGH 539 (1096)
Q Consensus 481 d-~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----------~~~~~~~ 539 (1096)
| .. ......+..|...|..++..|.+ .+.+.++++||+|+-+|++...... .+...--
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCC-CceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9 32 13445677899999999876642 2789999999999999998532111 1111122
Q ss_pred cEEEEEEcCCCC-EEEEEeeccCCCCeEEEEeCC
Q 001343 540 WCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNES 572 (1096)
Q Consensus 540 ~i~~l~~s~~~~-~l~~~~~~~~~~~~i~iwd~~ 572 (1096)
...++.++|... +|++|+. +...++||.+
T Consensus 202 elk~ltisp~rp~~laVGgs----dpfarLYD~R 231 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGS----DPFARLYDRR 231 (758)
T ss_pred eeeeeeecCCCCceEEecCC----Cchhhhhhhh
Confidence 567899999765 5666665 8889999953
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.69 E-value=3.7e-14 Score=156.50 Aligned_cols=271 Identities=13% Similarity=0.194 Sum_probs=177.4
Q ss_pred EEEEEeCCCeEEEEecCC-CCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE-CCCeEEEEEcc
Q 001343 359 LLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYA 436 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~-~dg~i~vwd~~ 436 (1096)
++++...++.|.+|++.+ ++..... .+ .+.+....++++|++++|++++ .++.|.+|+++
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~-----------------~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~ 65 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQ-----------------VV-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA 65 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeee-----------------EE-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC
Confidence 445556799999999964 3322110 02 1335677899999999987765 47899999997
Q ss_pred CCCccccceeecccccCEEEEEEecCCCcEEEEEEe-CCCcEEEEE-c-CCc---eEEEeeCCCCCeEEEEeeecCCCcE
Q 001343 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-L-SGR---KLFNFEGHEAPVYSICPHHKENIQF 510 (1096)
Q Consensus 437 ~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~d~~i~iwd-~-~~~---~~~~~~~~~~~v~~~~~~~~~~~~~ 510 (1096)
....+...... ...+....++|+|+++ +|++++ .++.|.+|+ . .+. .+..+.+ .....+++++| ++++
T Consensus 66 ~~g~l~~~~~~-~~~~~p~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p--~g~~ 139 (330)
T PRK11028 66 DDGALTFAAES-PLPGSPTHISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDP--DNRT 139 (330)
T ss_pred CCCceEEeeee-cCCCCceEEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCC--CCCE
Confidence 32222211111 2334578899999999 555554 589999999 4 332 2333332 23456677766 5566
Q ss_pred EEE-EECCCeEEEEEcCCCCeeeE-----Ee-CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC--C--eeeEE
Q 001343 511 IFS-TAIDGKIKAWLYDTMGSRVD-----YD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--G--TIKRT 579 (1096)
Q Consensus 511 l~s-~~~dg~i~iwd~~~~~~~~~-----~~-~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~--~--~~~~~ 579 (1096)
+++ ...++.|.+||+++...... .. ..+.....++|+|+|++++++.. .++.|.+|++.. + +.+..
T Consensus 140 l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 140 LWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred EEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEEE
Confidence 654 45679999999986432211 11 22345678999999999988764 378999999873 3 33444
Q ss_pred EcCcCc-----cceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCe----EEEEeecCCCCCCccEEEEeCCCCEEEEEEC
Q 001343 580 YAGFRK-----KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN----ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1096)
Q Consensus 580 ~~~~~~-----~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1096)
+..... .....+.++|++++++++. .++.|.+|++.... .+...... .....+.++|+|++|+++..
T Consensus 217 ~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 217 LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEEc
Confidence 332111 1123488999999999885 47899999986532 22222221 14578999999999998775
Q ss_pred -CCcEEEEEcC
Q 001343 650 -DNGFKILANA 659 (1096)
Q Consensus 650 -dg~i~iwd~~ 659 (1096)
+++|.+|++.
T Consensus 294 ~~~~v~v~~~~ 304 (330)
T PRK11028 294 KSHHISVYEID 304 (330)
T ss_pred cCCcEEEEEEc
Confidence 8899999875
No 200
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.68 E-value=4.7e-14 Score=155.65 Aligned_cols=261 Identities=14% Similarity=0.229 Sum_probs=171.8
Q ss_pred eeecCC-CCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecC-CCCeeecccceeecccccCcccccccccc
Q 001343 327 TWSLDD-LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELA-MRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 327 ~~~~~~-~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
+|+++. ....++.++.+.+....++++|+++++++++..++.|.+|++. +++...... . .
T Consensus 16 ~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~-----------------~-~ 77 (330)
T PRK11028 16 VWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE-----------------S-P 77 (330)
T ss_pred EEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee-----------------e-c
Confidence 777753 2234566677777889999999999544555568999999996 333221100 0 1
Q ss_pred CCCCEEEEEEcCCCCEEEEEEC-CCeEEEEEccCCC-ccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-
Q 001343 405 VPISVSRVAWSPDGNYVGVAFT-KHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~-dg~i~vwd~~~~~-~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd- 481 (1096)
..+....++|+|++++|++++. ++.|.+|++++.. .......+. +.....+++++|+++. .+++...++.|.+||
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~-l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRT-LWVPCLKEDRIRLFTL 155 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCE-EEEeeCCCCEEEEEEE
Confidence 2234678999999999988764 7899999997432 222211222 3345678899999984 446666789999999
Q ss_pred cCCceEE-------EeeCCCCCeEEEEeeecCCCcEEEEEEC-CCeEEEEEcCCC--Ce--eeEEeCC------CCcEEE
Q 001343 482 LSGRKLF-------NFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTM--GS--RVDYDAP------GHWCTT 543 (1096)
Q Consensus 482 ~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~--~~--~~~~~~~------~~~i~~ 543 (1096)
.+...+. ... .......+.|+| ++++++++.. +++|.+|+++.. .. ...+... ......
T Consensus 156 ~~~g~l~~~~~~~~~~~-~g~~p~~~~~~p--dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 232 (330)
T PRK11028 156 SDDGHLVAQEPAEVTTV-EGAGPRHMVFHP--NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAAD 232 (330)
T ss_pred CCCCcccccCCCceecC-CCCCCceEEECC--CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcccee
Confidence 4433221 111 123356788876 6788877776 899999999742 22 1222211 113346
Q ss_pred EEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe----eeEEEcCcCccceEEEEEeCCCCEEEEEEc-CCeEEEEeCC
Q 001343 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQIKFWDMD 615 (1096)
Q Consensus 544 l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 615 (1096)
+.++|++++++++.. .++.|.+|++.... .+..+... .....+.++|+|++++++.. +++|.+|+++
T Consensus 233 i~~~pdg~~lyv~~~---~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 233 IHITPDGRHLYACDR---TASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEECCCCCEEEEecC---CCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 889999999998743 37799999985432 22332221 13345899999999998774 8899999875
No 201
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.2e-14 Score=136.12 Aligned_cols=252 Identities=12% Similarity=0.183 Sum_probs=176.6
Q ss_pred ccCCCCCCccccCCCCCccceeeeee-----ecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccC
Q 001343 721 TSRSMDKPRTVDDVTDKPKPWQLAEI-----VDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHR 795 (1096)
Q Consensus 721 ~~s~d~~~l~s~~~dg~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~ 795 (1096)
+++|.+++++.|+.+|+|.+..+... ..+++...+...+ |..+|..++|.. . ++.++.||.|+-|.+..
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqa---hdgpiy~~~f~d--~-~Lls~gdG~V~gw~W~E 90 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQA---HDGPIYYLAFHD--D-FLLSGGDGLVYGWEWNE 90 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccc---cCCCeeeeeeeh--h-heeeccCceEEEeeehh
Confidence 35667777788888899988887642 3345555666666 999999999983 2 44455569999998854
Q ss_pred CccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCC-cEEEEecCCeEEEEEcccceEEEeecCCCCC
Q 001343 796 NEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND-SYVMSATGGKISLFNMMTFKVMTTFMSPPPA 874 (1096)
Q Consensus 796 ~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg-~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~ 874 (1096)
...+ ...-++|......... . ..--.|++|-+.|.. .+|..|+|+.++-||+.+|+..+++++|++.
T Consensus 91 ~~es-------~~~K~lwe~~~P~~~~--~---~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY 158 (325)
T KOG0649|consen 91 EEES-------LATKRLWEVKIPMQVD--A---VEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY 158 (325)
T ss_pred hhhh-------ccchhhhhhcCccccC--c---ccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce
Confidence 3221 1134456544332221 0 023468899999766 4555555899999999999999999999999
Q ss_pred eeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceE
Q 001343 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL 954 (1096)
Q Consensus 875 i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i 954 (1096)
|.+++--. ....+++|++||++++||.++++ |+-.+...+ ...+++.-.+ ..|.+++. +..+|+++....+
T Consensus 159 vH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k-~v~~ie~yk--~~~~lRp~~g---~wigala~--~edWlvCGgGp~l 229 (325)
T KOG0649|consen 159 VHSVVGRN-ANGQILSGAEDGTVRVWDTKTQK-HVSMIEPYK--NPNLLRPDWG---KWIGALAV--NEDWLVCGGGPKL 229 (325)
T ss_pred eeeeeecc-cCcceeecCCCccEEEEeccccc-eeEEecccc--ChhhcCcccC---ceeEEEec--cCceEEecCCCce
Confidence 99999855 45579999999999999999998 442222211 1111111111 24455554 5668999888899
Q ss_pred EEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecC
Q 001343 955 AIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1005 (1096)
Q Consensus 955 ~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~ 1005 (1096)
.+|++...++...+.- .+.+..+.|-. +.+++++..+.|.-|.+.
T Consensus 230 slwhLrsse~t~vfpi----pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 230 SLWHLRSSESTCVFPI----PARVHLVDFVD--DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred eEEeccCCCceEEEec----ccceeEeeeec--ceEEEeccccceeeeeec
Confidence 9999999988777753 66788888854 467778888889999865
No 202
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=1.1e-14 Score=162.45 Aligned_cols=268 Identities=17% Similarity=0.182 Sum_probs=193.9
Q ss_pred CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCEEEEEECCCeEEEEEccCCCc--ccc
Q 001343 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSND--LRQ 443 (1096)
Q Consensus 367 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~~~dg~i~vwd~~~~~~--~~~ 443 (1096)
+.+.||++....... ..-.-...|.|+.|+| +..+||.|+.+|.|.+||+..+.. ...
T Consensus 222 ~~~~vW~~~~p~~Pe-------------------~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ 282 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPE-------------------LVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG 282 (555)
T ss_pred ceEEEEecCCCCCce-------------------EEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc
Confidence 478899987652110 1222467899999999 577888889999999999988765 221
Q ss_pred ce-eecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCC--ceE-----EEee------CCCCCeEEEEeeecCCCc
Q 001343 444 HS-QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG--RKL-----FNFE------GHEAPVYSICPHHKENIQ 509 (1096)
Q Consensus 444 ~~-~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~--~~~-----~~~~------~~~~~v~~~~~~~~~~~~ 509 (1096)
+. ....|..+++.+.|..+....-+++++.||.|..|+... .+. .... .-...++++.|.+. +..
T Consensus 283 ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~-~p~ 361 (555)
T KOG1587|consen 283 LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT-DPN 361 (555)
T ss_pred cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccC-CCc
Confidence 11 234799999999998765422599999999999998221 111 1111 12345788999776 446
Q ss_pred EEEEEECCCeEEEEE---cCCCC-----eeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC-CCeeeEEE
Q 001343 510 FIFSTAIDGKIKAWL---YDTMG-----SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTY 580 (1096)
Q Consensus 510 ~l~s~~~dg~i~iwd---~~~~~-----~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~ 580 (1096)
.+++|+.+|.|.--+ .+... ....+..|.++|+++.++|-+..++..+. |..++||... ...++..+
T Consensus 362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~ 437 (555)
T KOG1587|consen 362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSL 437 (555)
T ss_pred eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec----cceeEeccccCCCCcchhh
Confidence 899999999987632 22222 12255677889999999998877665554 9999999987 66777777
Q ss_pred cCcCccceEEEEEeCCCC-EEEEEEcCCeEEEEeCCCCe--EEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEE
Q 001343 581 AGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVN--ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1096)
Q Consensus 581 ~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 657 (1096)
..+.. .+..++|+|... .|+++..||.|.+||+.... ++...... ....+.+.|+++|+.|++|...|.+.+|+
T Consensus 438 ~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 438 DSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred hhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 76665 689999999764 56667789999999997543 33333333 33677888999999999999999999999
Q ss_pred cCCC
Q 001343 658 NAIG 661 (1096)
Q Consensus 658 ~~~~ 661 (1096)
+...
T Consensus 515 l~~~ 518 (555)
T KOG1587|consen 515 LSES 518 (555)
T ss_pred cCch
Confidence 9654
No 203
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1e-14 Score=163.48 Aligned_cols=283 Identities=12% Similarity=0.099 Sum_probs=189.8
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
..+....-..+.|+|-...++++...-.|+|||.+.++.+..+..-......|+.+.+-.+...-++++|+.||.|+||+
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 33444466778899988899999877899999999998876543323345689999987654444899999999999998
Q ss_pred --cCC----ceEEEeeCCCC-----CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC-CcEEEEEEcC-
Q 001343 482 --LSG----RKLFNFEGHEA-----PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSA- 548 (1096)
Q Consensus 482 --~~~----~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~- 548 (1096)
..+ +.+..+.+-++ .-..+.+.......+|+++|.-..|+|||.........+.... ..++++.-+.
T Consensus 1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccccc
Confidence 333 22222222111 0111222223333466677778999999999887777655443 3677776554
Q ss_pred CCCEEEEEeeccCCCCeEEEEeCCCCe---eeEEEcCcCcc-ceEEEEEeCCCC-EEEEEEcCCeEEEEeCCCCeEEEEe
Q 001343 549 DGSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRKK-SNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNILTST 623 (1096)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~-~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1096)
.|+.+++|.. ||.|++||.+... .+...+.|... .|..+.+.+.|- .+++|+.+|.|++||++.......+
T Consensus 1220 ~gn~i~AGfa----DGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1220 HGNIIAAGFA----DGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFL 1295 (1387)
T ss_pred CCceEEEeec----CCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccc
Confidence 4688888887 9999999987643 46667777662 377788888664 5999999999999999874332222
Q ss_pred --ecCCCCC-CccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcc--cccCcceeEEeecCCCe
Q 001343 624 --DAEGGLP-NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFE--ALRTPIESVALKVSASS 691 (1096)
Q Consensus 624 --~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~g~~ 691 (1096)
..+...+ .++++..+++...+|+|+. +.|+||++... .+..+..+... -..+.+.+++|+|.--.
T Consensus 1296 ~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~--~l~~~k~n~~F~~q~~gs~scL~FHP~~~l 1365 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE--QLNIIKYNPGFMGQRIGSVSCLAFHPHRLL 1365 (1387)
T ss_pred eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh--hhcccccCcccccCcCCCcceeeecchhHh
Confidence 2222112 4899999999999999998 89999998543 23333222111 11234556666665443
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.2e-15 Score=155.17 Aligned_cols=196 Identities=15% Similarity=0.208 Sum_probs=155.7
Q ss_pred eeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeecc
Q 001343 835 PCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSID 913 (1096)
Q Consensus 835 ~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~ 913 (1096)
.+++|+.+|..|++++ ||+++||+..+...+.....|.+.|.++.||| |+++|++.+.| ..+||+..++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~------- 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGA------- 218 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCc-------
Confidence 7899999999999998 89999999888888888889999999999999 99999999999 89999999986
Q ss_pred ccccccceeeecCC--CCCCCCCceEEEecCC-----cEEEE-EecceEEEEEccccee-----ccccccCCCCCCCceE
Q 001343 914 TWEKRKSVTIHIPA--GKTPTGDTRVQFNADQ-----VRMLV-VHETQLAIYDASKMER-----IRQWTPQDALSAPISC 980 (1096)
Q Consensus 914 ~~~~~~~~~~~~~~--~~~~~~v~~v~fs~dg-----~~l~~-~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~i~~ 980 (1096)
+++... .... ....+.|+.|+ ...+. ..-+.|+.|++..... .++.... ...|++
T Consensus 219 --------~~a~~t~~~k~~-~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~---~~siSs 286 (398)
T KOG0771|consen 219 --------ALARKTPFSKDE-MFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR---FKSISS 286 (398)
T ss_pred --------hhhhcCCcccch-hhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc---cCccee
Confidence 222222 2222 56778898887 33333 3456677777753322 2222222 567999
Q ss_pred EEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccC
Q 001343 981 AVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1060 (1096)
Q Consensus 981 l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~ 1060 (1096)
++.|+||+++|.|+.||.|.|++..+.+...... .. |...|+ .|.|+| |.+.+++.+.|..+.+..+.
T Consensus 287 l~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk------~a---H~~~VT--~ltF~P-dsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 287 LAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVK------EA---HLGFVT--GLTFSP-DSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEcCCCcEEEEeccCCcEEEEEeceeeeeEeeh------hh---heeeee--eEEEcC-CcCcccccccCCceeEEEEe
Confidence 9999999999999999999999999888665433 23 899999 699999 99999999999999999886
Q ss_pred CCC
Q 001343 1061 ESE 1063 (1096)
Q Consensus 1061 ~~~ 1063 (1096)
-..
T Consensus 355 vd~ 357 (398)
T KOG0771|consen 355 VDK 357 (398)
T ss_pred ecc
Confidence 633
No 205
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.66 E-value=2.3e-14 Score=163.51 Aligned_cols=254 Identities=11% Similarity=0.053 Sum_probs=180.2
Q ss_pred cccCCCCEEEEEEcCCC-CEEEEEECCCeEEEEEccCC----CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCc
Q 001343 402 FKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGS----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~-~~l~s~~~dg~i~vwd~~~~----~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~ 476 (1096)
+..|...|..++.++.. .++++|+.||+|++||...- ...+...++......+.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 77799999999998865 99999999999999997632 22233223444577899999999999 7899999999
Q ss_pred EEEEEc-C--Cce-----EEEeeCC-CCCeEEE-EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeE--EeCCCCcEEEE
Q 001343 477 IKVWEL-S--GRK-----LFNFEGH-EAPVYSI-CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YDAPGHWCTTM 544 (1096)
Q Consensus 477 i~iwd~-~--~~~-----~~~~~~~-~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~l 544 (1096)
|++.+. . .+. .+....+ .+.+.++ ++........++.+..-+.|..||.+....... .....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999982 2 221 1111222 2334443 333222223788888999999999987766553 34456689999
Q ss_pred EEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC---CCEEEEEE--cCCeEEEEeCCCCeE
Q 001343 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT---QNHFLAVG--EDSQIKFWDMDNVNI 619 (1096)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~--~dg~i~iwd~~~~~~ 619 (1096)
+.+|.+.+++.|+. .|.+.+||++=+.++..........+..+..+|- ....++++ ..+.|.+|++.+|..
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999987 8999999999888888876555456666666653 24455444 578899999999876
Q ss_pred EEEeecCCC-----------------CCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 620 LTSTDAEGG-----------------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 620 ~~~~~~~~~-----------------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
...+-.... .-......+...+..+.+|+.|..|+.||....
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 666543311 001122334445578899999999999998766
No 206
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=7.1e-13 Score=142.41 Aligned_cols=543 Identities=10% Similarity=0.103 Sum_probs=329.6
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
......|++|+.... ++|+|+.||.++|-.+.+...-. +.-.+...+.......+.||++.|.-+.|+.+.+.|-
T Consensus 13 nnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~----~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDL----NKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCC-eEEeccccceeEEEEccccCCcc----cccccccccccchhhhhccCcceEEEEEecccccccc
Confidence 445689999999988 69999999999999987654321 1111223333334457999999999999999999999
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEEEEe
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICP 502 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~ 502 (1096)
+...+|.|.||-+-.|.-.... .-...++.|.+++|+.||. .|+....||.|.+=..+|+.+.--.-...-...+.|
T Consensus 88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~w 164 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLW 164 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchheccceee
Confidence 9999999999999887655432 1234667899999999999 788889999998877777665332211222345667
Q ss_pred eecCCCcEEEEEECCCeEEEEEcCCCC-------eee----EEeCCCCcEEEEEEc--------CCCCEEEEEeeccCCC
Q 001343 503 HHKENIQFIFSTAIDGKIKAWLYDTMG-------SRV----DYDAPGHWCTTMLYS--------ADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~----~~~~~~~~i~~l~~s--------~~~~~l~~~~~~~~~~ 563 (1096)
++ |...++.+-.+|.++++|.+..- +.. .+...+..|..+.|. ||...++++.. .
T Consensus 165 s~--D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~----n 238 (1189)
T KOG2041|consen 165 SE--DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA----N 238 (1189)
T ss_pred cc--cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----C
Confidence 55 55778888889999999865321 111 112222345555553 46677888876 7
Q ss_pred CeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC---------CeEEEEeCCCCeEEEEeecCCCCCCccE
Q 001343 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---------SQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1096)
|.+.+..-.+......+... -.+....|+++|..++++|.+ +.|.+|.. -|+.+.++...+. .|++
T Consensus 239 Gr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~It~ 313 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CITG 313 (1189)
T ss_pred ceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--eeee
Confidence 77776654433222222221 256668999999999998743 35666654 5777888887766 8999
Q ss_pred EEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCc
Q 001343 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPI 714 (1096)
Q Consensus 635 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~ 714 (1096)
++|-..|-.+|.+- |+.|.+=++...... ..+. ..+.+-..+..
T Consensus 314 lsWEg~gLriA~Av-dsfiyfanIRP~ykW-gy~e-----------~TvVy~y~~~e----------------------- 357 (1189)
T KOG2041|consen 314 LSWEGTGLRIAIAV-DSFIYFANIRPEYKW-GYIE-----------ETVVYVYQKEE----------------------- 357 (1189)
T ss_pred eEEcCCceEEEEEe-cceEEEEeecccceE-EEee-----------eEEEEEEccCC-----------------------
Confidence 99988887777664 667877666443110 0000 01111111100
Q ss_pred ccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeecc
Q 001343 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWH 794 (1096)
Q Consensus 715 ~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~ 794 (1096)
.....|.+||... .+-.. . .-....++++..+--.|+.-..+|.+.-++.
T Consensus 358 ------------------~p~y~i~Fwdtk~----nek~v-K------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~- 407 (1189)
T KOG2041|consen 358 ------------------LPQYGIMFWDTKT----NEKTV-K------TVTHFENMAFYREHCVLINRQDDGVIPEYST- 407 (1189)
T ss_pred ------------------CcceEEEEEeccc----Chhhh-h------hhcceeehheecccEEEEeccccCCCcchhh-
Confidence 0013466777652 11111 1 1123445566555443444444555543321
Q ss_pred CCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEE---------
Q 001343 795 RNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVM--------- 865 (1096)
Q Consensus 795 ~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~--------- 865 (1096)
....+ ++|-..-...+...+.- .-..|.-.-..-++..++.++...+.+|.....+..
T Consensus 408 ---le~~~--------~~~~l~LCNSIGT~lD~--kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~r 474 (1189)
T KOG2041|consen 408 ---LENRS--------RVYFLQLCNSIGTSLDY--KYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIR 474 (1189)
T ss_pred ---hhccc--------ceEEEeeecccCCcCCC--CcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhc
Confidence 00000 00100000001101100 112233333345788888999888999976432211
Q ss_pred -----------------------EeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeecccccccccee
Q 001343 866 -----------------------TTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVT 922 (1096)
Q Consensus 866 -----------------------~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~ 922 (1096)
.++.+..++|.+++.+ .++|+++-..|.|.-|.+.... .
T Consensus 475 kegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s---dk~l~vareSG~I~rySl~nv~---------------l 536 (1189)
T KOG2041|consen 475 KEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS---DKFLMVARESGGIYRYSLNNVV---------------L 536 (1189)
T ss_pred ccccccCCCCccchhhceeeccceeeccCCCcceeeeec---ceEEEEEeccCceEEEEeccee---------------e
Confidence 2333445667677764 4689999999999999888754 1
Q ss_pred eecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcc---cceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCc
Q 001343 923 IHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDAS---KMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGN 998 (1096)
Q Consensus 923 ~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~ 998 (1096)
.+...-. ..+.++++......+|. ..-|.+.+.|+. +|..+.-+.... ...|+.+.|..|...++.--+...
T Consensus 537 ~n~y~~n--~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~e--rrDVWd~~Wa~dNp~llAlmeKtr 612 (1189)
T KOG2041|consen 537 TNSYPVN--PSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSE--RRDVWDYEWAQDNPNLLALMEKTR 612 (1189)
T ss_pred eeccccC--chheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhh--hhhhhhhhhccCCchHHhhhhhce
Confidence 2222221 26888888888888888 777888888875 444444333332 667888899888776664445555
Q ss_pred EEEEecC
Q 001343 999 IGVFDAD 1005 (1096)
Q Consensus 999 i~vwd~~ 1005 (1096)
++|++-.
T Consensus 613 myifrgn 619 (1189)
T KOG2041|consen 613 MYIFRGN 619 (1189)
T ss_pred EEEecCc
Confidence 6666643
No 207
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.66 E-value=1.7e-12 Score=146.96 Aligned_cols=186 Identities=19% Similarity=0.277 Sum_probs=148.7
Q ss_pred CCceeecCCCceeeecCCCCcceEEeecCCCce-----EEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeec
Q 001343 315 AEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTV-----ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWD 389 (1096)
Q Consensus 315 ~~~v~~~~~~~~~~~~~~~~~~~~~~l~h~~~V-----~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~ 389 (1096)
.+.++.....+.+|..+.........+.+.... .-+-++++.- ++++|+.-+.|.+|+.. .....
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~-~i~~gsv~~~iivW~~~-~dn~p-------- 168 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEEL-YIASGSVFGEIIVWKPH-EDNKP-------- 168 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEE-EEEeccccccEEEEecc-ccCCc--------
Confidence 444555555555777777777777777766543 2334566665 69999999999999987 21110
Q ss_pred ccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEE
Q 001343 390 MAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVV 469 (1096)
Q Consensus 390 ~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~ 469 (1096)
..+.||.+.|.++.|+-||+++++++.|.++++|++++++.... +.-+|...|+.++|.|. .++
T Consensus 169 ----------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~--~~fgHsaRvw~~~~~~n----~i~ 232 (967)
T KOG0974|consen 169 ----------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC--TGFGHSARVWACCFLPN----RII 232 (967)
T ss_pred ----------ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc--ccccccceeEEEEeccc----eeE
Confidence 13889999999999999999999999999999999999877663 45689999999999988 599
Q ss_pred EEeCCCcEEEEEcCCceEEEeeCCCC-CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC
Q 001343 470 TCGDDKLIKVWELSGRKLFNFEGHEA-PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM 528 (1096)
Q Consensus 470 s~s~d~~i~iwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 528 (1096)
|++.|.+.++|+.++..+..+.+|.. .|+.++..+ +...+++++.||.+++|++...
T Consensus 233 t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~--~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 233 TVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPI--GVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EeccceEEEEEecccceehhhhhhhhcceeEEEEcC--CceEEEeeccCcchhhhhhhcc
Confidence 99999999999988888889988865 488888755 4478999999999999997643
No 208
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.8e-14 Score=163.66 Aligned_cols=235 Identities=12% Similarity=0.106 Sum_probs=165.0
Q ss_pred CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECC---CeEEEEEccCCCccc
Q 001343 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLR 442 (1096)
Q Consensus 366 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d---g~i~vwd~~~~~~~~ 442 (1096)
+..|.|||....... .+..|...+.+.+|||||++|+.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998654321 156678889999999999999987654 479999998875322
Q ss_pred cceeecccccCEEEEEEecCCCcEEEEEE-eCCCcEEEE--EcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEE-ECCC
Q 001343 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVW--ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFST-AIDG 518 (1096)
Q Consensus 443 ~~~~l~~h~~~v~~l~~s~d~~~~~l~s~-s~d~~i~iw--d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg 518 (1096)
+..+.+| ...++|+|||+ .|+.+ +.+|.+.|| |..+..+..+..+...+....|+| ||..|+.+ ..+|
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~g 314 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSP--DGQSILFTSDRSG 314 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECC--CCCEEEEEECCCC
Confidence 1123344 44689999999 56554 468876666 545555667777777788889977 56666654 4678
Q ss_pred eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCC
Q 001343 519 KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1096)
Q Consensus 519 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 598 (1096)
..++|+++..........+.. ....|+|||+.++..+. ..+.+||+.+++........ ......|+|+|+
T Consensus 315 ~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~ 384 (429)
T PRK01742 315 SPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF---LDESPSISPNGI 384 (429)
T ss_pred CceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC---CCCCceECCCCC
Confidence 899998765433222222322 45789999999988763 34667999988765433322 224577999999
Q ss_pred EEEEEEcCCeEEEEeCC--CCeEEEEeecCCCCCCccEEEEeCC
Q 001343 599 HFLAVGEDSQIKFWDMD--NVNILTSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 599 ~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1096)
+|++++.++.+.+|.+. ++.....+..+.. .+...+|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 99999999988888753 5777777765543 6788999984
No 209
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.64 E-value=2.4e-13 Score=148.50 Aligned_cols=318 Identities=11% Similarity=0.155 Sum_probs=193.6
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCC
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 642 (1096)
++.|.+.|..+.+.+.++..... ....+.++|||+++++++.||.|.++|+.+++.+..+.... ...++++++||+
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---~~~~i~~s~DG~ 90 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---NPRGIAVSPDGK 90 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS---EEEEEEE--TTT
T ss_pred CCEEEEEECCCCeEEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC---CcceEEEcCCCC
Confidence 88999999999999999987544 34457899999999999999999999999999999987654 468899999999
Q ss_pred EEEEEE-CCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCc
Q 001343 643 LLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPT 721 (1096)
Q Consensus 643 ~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1096)
+++++. .++.+.++|..+. +.++.+.....
T Consensus 91 ~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~------------------------------------------------ 121 (369)
T PF02239_consen 91 YVYVANYEPGTVSVIDAETL-EPVKTIPTGGM------------------------------------------------ 121 (369)
T ss_dssp EEEEEEEETTEEEEEETTT---EEEEEE--EE------------------------------------------------
T ss_pred EEEEEecCCCceeEeccccc-cceeecccccc------------------------------------------------
Confidence 998776 5889999998776 33333221100
Q ss_pred cCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecC-CeEEEeeccCCccCC
Q 001343 722 SRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN-GVQKLWKWHRNEQNP 800 (1096)
Q Consensus 722 ~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-g~v~vw~~~~~~~~~ 800 (1096)
...+ ...++..+..+|....++..-.+ +.+.+-++...
T Consensus 122 ----------------------------------~~~~---~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~---- 160 (369)
T PF02239_consen 122 ----------------------------------PVDG---PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP---- 160 (369)
T ss_dssp -----------------------------------TTT---S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS----
T ss_pred ----------------------------------cccc---cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc----
Confidence 0000 23456677777777766665554 55554443221
Q ss_pred CCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec--CCeEEEEEcccceEEEeec----CCCCC
Q 001343 801 SGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFM----SPPPA 874 (1096)
Q Consensus 801 ~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~--dg~v~iwd~~~~~~~~~~~----~h~~~ 874 (1096)
..+...... .........|+|++++++++. ++.|-++|..+++.+..+. .|..+
T Consensus 161 ------------------~~~~~~~i~--~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~ 220 (369)
T PF02239_consen 161 ------------------KNLKVTTIK--VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGP 220 (369)
T ss_dssp ------------------SCEEEEEEE----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETT
T ss_pred ------------------cccceeeec--ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccc
Confidence 000000000 233455689999999987765 4889999999998877654 23333
Q ss_pred eeEEEEecC---------CCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcE
Q 001343 875 STFLAFHPQ---------DNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR 945 (1096)
Q Consensus 875 i~~l~~s~~---------d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~ 945 (1096)
+..+ .+|. .+...++.-....+.+|+..+.+ .++.+..... . .-++.+|++++
T Consensus 221 ~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk---------------vv~~I~~~G~-g-lFi~thP~s~~ 282 (369)
T PF02239_consen 221 GANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWK---------------VVKTIPTQGG-G-LFIKTHPDSRY 282 (369)
T ss_dssp EEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTS---------------EEEEEE-SSS-S---EE--TT-SE
T ss_pred cccc-cCCCcceEEeeccccceecccccCCccccchhhcCe---------------EEEEEECCCC-c-ceeecCCCCcc
Confidence 3332 2231 11122111112233445444443 3444444332 4 67888999999
Q ss_pred EEEE-----ecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecC--CcEEEEecCCCceeEEEc
Q 001343 946 MLVV-----HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD--GNIGVFDADTLRLRCYIA 1014 (1096)
Q Consensus 946 l~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~d--g~i~vwd~~~~~~~~~~~ 1014 (1096)
+.+. ..+.|.++|.++.+.+..+.... ...+..+.|++||+++.++..+ +.|.|||..+.+...++.
T Consensus 283 vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~--~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 283 VWVDTFLNPDADTVQVIDKKTLKVVKTITPGP--GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH--T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEeeccCCCCCceEEEEECcCcceeEEEeccC--CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 9995 24789999999998888876432 3458999999999986655544 369999999999877765
No 210
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.63 E-value=7.9e-14 Score=159.22 Aligned_cols=269 Identities=16% Similarity=0.220 Sum_probs=183.4
Q ss_pred CCCcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEE
Q 001343 332 DLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (1096)
Q Consensus 332 ~~~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (1096)
.+.|.++..++ |...|..++.++....+++|||.||+|+|||...-..-. ...+ ...++..-.+.+.
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r-----------S~ltys~~~sr~~ 1102 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR-----------SELTYSPEGSRVE 1102 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee-----------eeEEEeccCCceE
Confidence 34567777777 999999999998874489999999999999986422110 0000 0111333577899
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEccCCCccc----cce--eecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cC
Q 001343 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR----QHS--QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1096)
Q Consensus 411 ~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~----~~~--~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~ 483 (1096)
++.+.+.+..+|+++.||.|++.+++-.+.-+ ... .+......|..-+|....+...++.+..-+.|..|| ..
T Consensus 1103 ~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1103 KVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred EEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchh
Confidence 99999999999999999999999987621111 000 122222334444555544433688888899999999 55
Q ss_pred CceEEEee--CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC-CcEEEEEEcCC---CCEEEEEe
Q 001343 484 GRKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSAD---GSRLFSCG 557 (1096)
Q Consensus 484 ~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~---~~~l~~~~ 557 (1096)
...+.+++ ...+.|++++..| .+.+++.|+..|.+.+||++-+..+..+.... .++..+...|- ....++++
T Consensus 1183 ~~~~w~lk~~~~hG~vTSi~idp--~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~ 1260 (1431)
T KOG1240|consen 1183 RHDAWRLKNQLRHGLVTSIVIDP--WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAG 1260 (1431)
T ss_pred hhhHHhhhcCccccceeEEEecC--CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEec
Confidence 55444443 3457799999976 55799999999999999999887777654433 36666666553 34555554
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcCcc------------------ceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKK------------------SNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~------------------~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
.. +.+.|.+|++.+|....++....+. ....+.+...+..+++|+.|..|+.||...
T Consensus 1261 ~~--~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1261 SS--SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred cc--CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 31 4789999999998777666443110 011133334456889999999999999764
No 211
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=1.9e-12 Score=129.65 Aligned_cols=194 Identities=14% Similarity=0.220 Sum_probs=136.1
Q ss_pred ccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC--CeEEEEEcCC
Q 001343 451 VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID--GKIKAWLYDT 527 (1096)
Q Consensus 451 ~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~ 527 (1096)
...+..+.|+.+.. .|..|+.||. +++. ..-............|.-+-|+. .+++..+.+ +.+++.++..
T Consensus 5 ~~ti~~~~~Nqd~~--~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSS----SLvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 5 KPTINFIGFNQDST--LLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSS----SLVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred Ccceeeeeecccee--EEEccCCCce-eEEecCchHHhhcccCCCeEEEEeeccc----ceeEEEecCCCceEEEEEccc
Confidence 34567777988887 7888887775 5666 32222111111222344444432 355555544 4588998887
Q ss_pred CCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC--CCCEEEEE--
Q 001343 528 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAV-- 603 (1096)
Q Consensus 528 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~-- 603 (1096)
...+..+... ..|.++.++.+ .|+++- ...|+|||+++.+++.++......+-..+++++ .+.+++.=
T Consensus 78 ~~~ICe~~fp-t~IL~VrmNr~--RLvV~L-----ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s 149 (391)
T KOG2110|consen 78 KTTICEIFFP-TSILAVRMNRK--RLVVCL-----EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS 149 (391)
T ss_pred CceEEEEecC-CceEEEEEccc--eEEEEE-----cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC
Confidence 7777666544 46888888654 566665 556999999999999998766332333345554 45577763
Q ss_pred EcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCc-EEEEEcCCC
Q 001343 604 GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG-FKILANAIG 661 (1096)
Q Consensus 604 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~ 661 (1096)
...|.|.+||..+-+.+..+..|.+ .+-+++|+++|.+||++++.|+ ||+|.+.+|
T Consensus 150 ~t~GdV~l~d~~nl~~v~~I~aH~~--~lAalafs~~G~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 150 TTSGDVVLFDTINLQPVNTINAHKG--PLAALAFSPDGTLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred CCCceEEEEEcccceeeeEEEecCC--ceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence 2578999999999999999997766 9999999999999999999887 789999888
No 212
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=9.5e-15 Score=148.81 Aligned_cols=196 Identities=15% Similarity=0.189 Sum_probs=147.2
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECC
Q 001343 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1096)
Q Consensus 348 ~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d 427 (1096)
.+++|+++|. .+|+|+.||+++||++.+...+.. ...|...|.++.|||||+.|++-+.|
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~-------------------e~~~~~eV~DL~FS~dgk~lasig~d 207 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILE-------------------EIAHHAEVKDLDFSPDGKFLASIGAD 207 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchhhhh-------------------hHhhcCccccceeCCCCcEEEEecCC
Confidence 8999999999 799999999999999877665543 55699999999999999999999999
Q ss_pred CeEEEEEccCCCccccceeecccccCEEEEEEecCC--CcEEEE-EEeCCCcEEEEE-c--CC-c--eEEEeeCCCCCeE
Q 001343 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN--KLLCVV-TCGDDKLIKVWE-L--SG-R--KLFNFEGHEAPVY 498 (1096)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~--~~~~l~-s~s~d~~i~iwd-~--~~-~--~~~~~~~~~~~v~ 498 (1096)
..+||+.++|..+..... ..-......+.|+.|+ ..++++ .-..-+.|+.|| . .+ . ..++.......|+
T Consensus 208 -~~~VW~~~~g~~~a~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siS 285 (398)
T KOG0771|consen 208 -SARVWSVNTGAALARKTP-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSIS 285 (398)
T ss_pred -ceEEEEeccCchhhhcCC-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcce
Confidence 999999999966654321 2345567788898877 122333 334446677766 1 12 1 1122222334689
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~ 571 (1096)
+++++. +|++++.|+.||.|-|++..+.+... ....|...|+.+.|+||.+++++.+. +....+..+
T Consensus 286 sl~VS~--dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs----~~~~~v~~l 353 (398)
T KOG0771|consen 286 SLAVSD--DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS----DNEAAVTKL 353 (398)
T ss_pred eEEEcC--CCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccccc----CCceeEEEE
Confidence 999865 78999999999999999988777665 44567889999999999999998765 555555443
No 213
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.61 E-value=7.7e-13 Score=144.52 Aligned_cols=333 Identities=12% Similarity=0.093 Sum_probs=197.1
Q ss_pred cEE-EEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccc
Q 001343 509 QFI-FSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS 587 (1096)
Q Consensus 509 ~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 587 (1096)
+++ ++-..+|.|.+.|..+.+.+..+......-..+.++|||+++++++. ++.|.++|+.+++.++++.... .
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~--~ 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG--N 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS--E
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC--C
Confidence 344 45567899999999999888888776555566889999999999875 8899999999999999987654 3
Q ss_pred eEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCC-----CCCccEEEEeCCCCEEEEEECC-CcEEEEEcCC
Q 001343 588 NGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGG-----LPNLPRLRFSKEGNLLAVTTAD-NGFKILANAI 660 (1096)
Q Consensus 588 i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~~ 660 (1096)
...++++++|++++++. .++.+.++|..+.+.++.+..... ...+..+..+|....++..-.| +.|.+.|..+
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 56699999999998876 789999999999999988765422 2256677778877755555544 6666656533
Q ss_pred CccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccc
Q 001343 661 GLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKP 740 (1096)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~i 740 (1096)
..... +
T Consensus 160 ~~~~~--------------------------------------------------------------------------~ 165 (369)
T PF02239_consen 160 PKNLK--------------------------------------------------------------------------V 165 (369)
T ss_dssp SSCEE--------------------------------------------------------------------------E
T ss_pred ccccc--------------------------------------------------------------------------e
Confidence 20000 0
Q ss_pred eeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeec-CCeEEEeeccCCccCCCCceeeecCccccccCccc
Q 001343 741 WQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGL 819 (1096)
Q Consensus 741 w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~ 819 (1096)
..+. .........|+|++++++++.. ++.+-+++..... .. ..+..|+
T Consensus 166 ------------~~i~------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k------~v-------~~i~~g~ 214 (369)
T PF02239_consen 166 ------------TTIK------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK------LV-------ALIDTGK 214 (369)
T ss_dssp ------------EEEE--------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE------EE-------EEEE-SS
T ss_pred ------------eeec------ccccccccccCcccceeeecccccceeEEEeeccce------EE-------EEeeccc
Confidence 0000 2223446678888887766543 5677777754321 11 1111121
Q ss_pred cccc-cccCCCcCCCeeeeeecCCCcEE-EEecCCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEe----eC
Q 001343 820 LMAN-DVAGVNLEEAVPCIALSKNDSYV-MSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG----TE 893 (1096)
Q Consensus 820 ~~~~-~~~g~~~~~~v~~l~~s~dg~~l-a~~~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~----~~ 893 (1096)
.... ...+..|...-.--+.+..+... ...+.+.+.+||..+.+.++++....+. ..+.-+| +++++.+. ..
T Consensus 215 ~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~ 292 (369)
T PF02239_consen 215 KPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPD 292 (369)
T ss_dssp SBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SS
T ss_pred cccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCC
Confidence 1100 00000022110111122333333 2233466778999999999999877666 7889999 89999887 45
Q ss_pred CCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE---EecceEEEEEcccceeccccc
Q 001343 894 DSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV---VHETQLAIYDASKMERIRQWT 969 (1096)
Q Consensus 894 dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~---~~d~~i~iwd~~~~~~~~~~~ 969 (1096)
.++|.++|..+.+ .+..+.......+..+.|++||+.+.. ..++.|.|||..+.+.+..+.
T Consensus 293 ~~~v~viD~~tl~---------------~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 293 ADTVQVIDKKTLK---------------VVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp HT-EEEEECCGTE---------------EEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CceEEEEECcCcc---------------eeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 5889999998876 111211100014789999999998777 234589999999999877775
No 214
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.61 E-value=7.4e-14 Score=134.46 Aligned_cols=259 Identities=13% Similarity=0.203 Sum_probs=182.4
Q ss_pred eeecCCCCcceEE--eecCCCceEEEEEcCCCC----cEEEEEeCCCeEEEEecCCCCeeecccceeecccccCcccccc
Q 001343 327 TWSLDDLPRTVAV--SLHQGSTVISMDFHPSHQ----TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (1096)
Q Consensus 327 ~~~~~~~~~~~~~--~l~h~~~V~~v~fsp~g~----~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1096)
+-.++...++.+. ++.|.-+++.+.|.|+.. .+|||. +..+++|.+...+...... ..+...
T Consensus 77 iv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~----------~~L~~~ 144 (364)
T KOG0290|consen 77 IVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQ----------SVLNNN 144 (364)
T ss_pred EEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehh----------hhhccC
Confidence 3444444444443 367999999999999863 367764 5689999997533211100 001111
Q ss_pred ccccCCCCEEEEEEcC-CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 401 IFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
.-..+.+++++..|+. |-++|.+++-|.+..|||++++........+.+|...|..++|...+.. .++++|.||+|++
T Consensus 145 kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRm 223 (364)
T KOG0290|consen 145 KNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRM 223 (364)
T ss_pred cccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEE
Confidence 2344678999999998 7889999999999999999997442222257899999999999997777 8999999999999
Q ss_pred EE-cCCc---eEEEeeCCCCCeEEEEeeecCCCcEEEEEECC-CeEEEEEcCCCCe-eeEEeCCCCcEEEEEEcCCC-CE
Q 001343 480 WE-LSGR---KLFNFEGHEAPVYSICPHHKENIQFIFSTAID-GKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADG-SR 552 (1096)
Q Consensus 480 wd-~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~-~~ 552 (1096)
+| ..-+ .++.-.....+...++|++. |-+++++-..| ..|.|.|++.... +..+..|...|+.++|.|.. ..
T Consensus 224 FDLR~leHSTIIYE~p~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~h 302 (364)
T KOG0290|consen 224 FDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSH 302 (364)
T ss_pred EEecccccceEEecCCCCCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCce
Confidence 99 3322 22222223567888888765 45677776655 5688999987554 55889999999999999965 56
Q ss_pred EEEEeeccCCCCeEEEEeCCCCee------eEEEcCcCccceEEEEEeC-CCCEEEEEEc
Q 001343 553 LFSCGTSKDGDSFLVEWNESEGTI------KRTYAGFRKKSNGVVQFDT-TQNHFLAVGE 605 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~~------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 605 (1096)
+++++. |....+||+...-. +-.+. .+..|+.+.|++ .+.+++.+..
T Consensus 303 ictaGD----D~qaliWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 303 ICTAGD----DCQALIWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred eeecCC----cceEEEEecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEec
Confidence 778876 89999999875322 22222 223678899986 4566766654
No 215
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.60 E-value=7.1e-15 Score=139.81 Aligned_cols=171 Identities=18% Similarity=0.228 Sum_probs=136.7
Q ss_pred cchHHHHHHHHHHHHHcChHHHHHHHHHhhCCCcc---------HHHHHHHHhccCHHHHHHHHcCCCCCCCcccchhhH
Q 001343 3 SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFN---------MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIF 73 (1096)
Q Consensus 3 ~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~ 73 (1096)
...+|+.|||++||...||.++|..+.+|+|+... ...+|.+|..|+.++|+..+.++.+.--+.... +.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~-l~ 102 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE-LF 102 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh-HH
Confidence 35789999999999999999999999999999872 467999999999999999999984433333233 89
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccCccchhhhcccCC-chHHHHHHHHHHHhhcc
Q 001343 74 FEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-TKTARGIMLIELKKLIE 152 (1096)
Q Consensus 74 ~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~r~~l~~~l~~~i~ 152 (1096)
|.|++|+++|||+.++.++|+.|+|.++.|+...+++.++.|...|++..++..+..+...- ....|+++++.++..|-
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~s~R~kvA~~vN~aiL 182 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQSLRQKVASEVNSAIL 182 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888899999999998877764333221101 35668999999998885
Q ss_pred cCccccccccCCCCCchHHHHHHHHHHHHH
Q 001343 153 ANPLFRDKLAFPTLKSSRLRTLINQSLNWQ 182 (1096)
Q Consensus 153 ~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~q 182 (1096)
...-. -...+|..|++...+.|
T Consensus 183 ~~~~~--------~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 183 ASQEH--------ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHhcc--------cccchHHHHHHHHHHHH
Confidence 53220 11347888887766666
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.60 E-value=5.6e-14 Score=146.57 Aligned_cols=208 Identities=15% Similarity=0.176 Sum_probs=148.7
Q ss_pred cCCCcEEEEec-CCeEEEEEcccceEEEeec----CCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccce--------
Q 001343 840 SKNDSYVMSAT-GGKISLFNMMTFKVMTTFM----SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE-------- 906 (1096)
Q Consensus 840 s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~----~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~-------- 906 (1096)
.+.+--|..|- -|.|.+.|....+..+.+. -....++++.|-|.+...++++-.+|.+.+||..--.
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 45665556666 5889888875532222111 1236899999999666677778889999999764211
Q ss_pred ----eeeeeccccccccc-eeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceE
Q 001343 907 ----LCVWSIDTWEKRKS-VTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISC 980 (1096)
Q Consensus 907 ----~~~w~~~~~~~~~~-~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~ 980 (1096)
.-.+.+..+..+.. .++....--. +.|...+|||||++||+ +.||.++|+|..+.+++..+..- -+...|
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~-g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY---FGGLLC 337 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGE-GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY---FGGLLC 337 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEecc-ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh---ccceEE
Confidence 00111111111111 1222221111 38899999999999999 99999999999999987777643 788999
Q ss_pred EEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCC--------------------
Q 001343 981 AVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL-------------------- 1040 (1096)
Q Consensus 981 l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~-------------------- 1040 (1096)
++|||||+||++|++|.-|.||.+...++.++-. + |.++|. +|+|.|=
T Consensus 338 vcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq-------G---HkSWVs--~VaFDpytt~~ee~~~~~~~~~~~~~~ 405 (636)
T KOG2394|consen 338 VCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ-------G---HKSWVS--VVAFDPYTTSTEEWNNFSGMDSTFSDV 405 (636)
T ss_pred EEEcCCccEEEecCCcceEEEEEeccceEEEecc-------c---ccccee--eEeecccccccccccccccccccccch
Confidence 9999999999999999999999999998877644 3 999999 6888720
Q ss_pred --------------C-------------CceEEEEeeCCcEEEEccCCCC
Q 001343 1041 --------------E-------------PNQFAIGLTDGSVKVMEPSESE 1063 (1096)
Q Consensus 1041 --------------d-------------~~~l~s~~~dg~i~vW~v~~~~ 1063 (1096)
+ .-+|.+.++|-.+.+||+....
T Consensus 406 ~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 406 AHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred hcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence 0 1257788899999999998865
No 217
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.59 E-value=6.3e-12 Score=142.51 Aligned_cols=277 Identities=14% Similarity=0.123 Sum_probs=191.2
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccC--CCCEEEEEEcCCCCEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV--PISVSRVAWSPDGNYV 421 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~spd~~~l 421 (1096)
-.++.+.++-. +|+|| | ..-.|.+||+..+..+.. +. +.+.+..| .+.+.+ .+.++
T Consensus 7 ~~~l~~~~~~~--~~lla-g-~gp~i~~yd~~s~~li~~--~~-----------~~~~~~~H~~e~~~~l-----~~~~~ 64 (967)
T KOG0974|consen 7 LGPLNLPQLVS--DYLLA-G-SGPEILVYDLSSGCLIRH--LI-----------QSKILEVHRGEGKVKL-----LSGKI 64 (967)
T ss_pred cccccchhhcc--ceeee-c-CCCceEEeeCCchhHhhh--hh-----------hhccccccccccccee-----ccceE
Confidence 34555666555 44443 3 566899999999887642 11 11123344 111111 23455
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeE--
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY-- 498 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~-- 498 (1096)
+++..-+.+..=+.... .+..-.+.|....+..+.+ .++..+.++.+.+|| ..+..+.... +.....
T Consensus 65 v~~~~~~~v~~~~~~~~-------~~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~-~~er~~l~ 134 (967)
T KOG0974|consen 65 VTCAKSDEVYVKEASNQ-------IIERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQ-SDERCTLY 134 (967)
T ss_pred EEEEeecceeecchhhh-------hhhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcC-CCceEEEE
Confidence 55544434333222211 1122334455566666677 688888899999999 6666555544 333222
Q ss_pred -EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 499 -SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 499 -~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
++-+-.+.+.-++++|+.-+.|.+|+.........+.+|.+.|.++.++.||+++++++. |..+++|++.+.+..
T Consensus 135 ~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~ 210 (967)
T KOG0974|consen 135 SSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVL 210 (967)
T ss_pred eEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec----Ccceeeeeccccccc
Confidence 222222345568999999999999998855555568899999999999999999999997 999999999998877
Q ss_pred E-EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEE
Q 001343 578 R-TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1096)
Q Consensus 578 ~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1096)
. +.-+|.. .+..++|.|+ .++++++|.+.++|+.+ +..+..+..|... .+..++..++...+++++.|+.+++|
T Consensus 211 ~~~~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~-~iw~~~~~~~~~~~vT~g~Ds~lk~~ 285 (967)
T KOG0974|consen 211 GCTGFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGK-GIWKIAVPIGVIIKVTGGNDSTLKLW 285 (967)
T ss_pred Ccccccccc-eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhc-ceeEEEEcCCceEEEeeccCcchhhh
Confidence 7 6667777 7778889887 99999999999999764 4444466666543 78999999999999999999999999
Q ss_pred EcCCC
Q 001343 657 ANAIG 661 (1096)
Q Consensus 657 d~~~~ 661 (1096)
++...
T Consensus 286 ~l~~r 290 (967)
T KOG0974|consen 286 DLNGR 290 (967)
T ss_pred hhhcc
Confidence 98654
No 218
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.9e-14 Score=148.31 Aligned_cols=324 Identities=14% Similarity=0.153 Sum_probs=222.5
Q ss_pred eEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC--CCEEEEEEcCCeE
Q 001343 532 VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT--QNHFLAVGEDSQI 609 (1096)
Q Consensus 532 ~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i 609 (1096)
..+..|.+.|..+.|+..|..+++++. +..+.+||...++....|...+...+....|-|. ...+++++.||.+
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSD----D~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSD----DLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCc----cceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 356788899999999999999999997 9999999999988877776443335555556663 3678999999999
Q ss_pred EEEeCCC-CeEEEEeecCCCCCCccEEEEeCCC-CEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeec
Q 001343 610 KFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (1096)
Q Consensus 610 ~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 687 (1096)
++=.+.. +....+.....+.+.|..++.-|+. ..|.+++.|+.+.-+|+..+...........++..+.....++..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 9988654 4444344444555689999999955 6788999999999999877632211111111111122233444444
Q ss_pred CCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEE--EcCCC--CCC
Q 001343 688 SASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLV--TMPES--TDT 763 (1096)
Q Consensus 688 ~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~--~~~~~--~~~ 763 (1096)
... ..+++++.|..+++||.........+..+ ..|.. ...
T Consensus 292 ~nt------------------------------------~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~ 335 (559)
T KOG1334|consen 292 RNT------------------------------------NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDD 335 (559)
T ss_pred CCc------------------------------------cccccCChhhhhhhhcccchhhccccchhhhcCCccccccC
Confidence 332 25678888888999987643222111100 01110 014
Q ss_pred cccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeee-cCC
Q 001343 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL-SKN 842 (1096)
Q Consensus 764 ~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~-s~d 842 (1096)
.-.|++++|+.++..++++..|-.|+++.-..+.. ....+..+ . ....+..+.|......|..+-| -|.
T Consensus 336 ~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G----~~p~~~s~-----~-~~~~k~vYKGHrN~~TVKgVNFfGPr 405 (559)
T KOG1334|consen 336 PVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG----SEPDPSSP-----R-EQYVKRVYKGHRNSRTVKGVNFFGPR 405 (559)
T ss_pred cccceeEEecCCccceeeeecccceEEeccccccC----CCCCCCcc-----h-hhccchhhcccccccccceeeeccCc
Confidence 45799999999998899999999999985433221 10000000 0 1223334667222345777765 578
Q ss_pred CcEEEEecC-CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccce
Q 001343 843 DSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1096)
Q Consensus 843 g~~la~~~d-g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~ 906 (1096)
..|+++|+| |.|.||+-.+++.++-+++...-|+||.-+| --.+||+.+-|..|+||.-.+.+
T Consensus 406 sEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 406 SEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP-HLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred cceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC-CCchhhccCCccceeeecCCccc
Confidence 899999998 9999999999999999998888999999998 77799999999999999775444
No 219
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.58 E-value=2.2e-10 Score=118.10 Aligned_cols=415 Identities=12% Similarity=0.113 Sum_probs=234.9
Q ss_pred CCceeecCCCceeeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEE----E--eCCCeEEEEecCCCCeeecccceee
Q 001343 315 AEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLV----G--SSNGEITLWELAMRDRLVSKPFKIW 388 (1096)
Q Consensus 315 ~~~v~~~~~~~~~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llas----g--~~dg~I~iwd~~~~~~~~~~~~~~~ 388 (1096)
.+.+.|....+ +|..+...++..+...|-+-|+.-.|+|+|+.+..+ | ...+.+.+.+.+.|+..+.
T Consensus 50 GD~IiFt~~Dd-lWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi------ 122 (668)
T COG4946 50 GDRIIFTCCDD-LWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI------ 122 (668)
T ss_pred CcEEEEEechH-HHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE------
Confidence 46677776555 899998889888888899999999999999964332 1 2345677778788876542
Q ss_pred cccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCe----EEEEEccCCCc-cccceeecccccCEEEEEEecCC
Q 001343 389 DMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL----IQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPN 463 (1096)
Q Consensus 389 ~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~----i~vwd~~~~~~-~~~~~~l~~h~~~v~~l~~s~d~ 463 (1096)
..+ | ..--.-..|+|||+.|++...-.- -.+|.+..... .. .-.-++.+.+.+- ||
T Consensus 123 -----------Tyf-G-r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e-----~LnlGpathiv~~-dg 183 (668)
T COG4946 123 -----------TYF-G-RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE-----PLNLGPATHIVIK-DG 183 (668)
T ss_pred -----------EEe-c-cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee-----eccCCceeeEEEe-CC
Confidence 012 2 111223579999999987754322 22333332111 11 1123445555553 33
Q ss_pred CcEEEEEEeCCC------------cEEEEE--cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCC
Q 001343 464 KLLCVVTCGDDK------------LIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG 529 (1096)
Q Consensus 464 ~~~~l~s~s~d~------------~i~iwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 529 (1096)
. ++.|-.-- .=++|- ..|+....+-.-.+.|++-.+.. + ...+....||.=.+|..+-..
T Consensus 184 ~---ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~--~-RvYFlsD~eG~GnlYSvdldG 257 (668)
T COG4946 184 I---IVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVG--E-RVYFLSDHEGVGNLYSVDLDG 257 (668)
T ss_pred E---EEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEc--c-eEEEEecccCccceEEeccCC
Confidence 2 33332111 124555 33333333333333343332211 1 222233444444444433222
Q ss_pred eeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcC---c--Cccc--eEE---E-EEeC-CC
Q 001343 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG---F--RKKS--NGV---V-QFDT-TQ 597 (1096)
Q Consensus 530 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~---~--~~~~--i~~---~-~~~~-~~ 597 (1096)
.-......-....+=..+.||+.++... .|.|+++|..+.+..+.--+ . .... +.- + .|++ +|
T Consensus 258 kDlrrHTnFtdYY~R~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~G 332 (668)
T COG4946 258 KDLRRHTNFTDYYPRNANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNG 332 (668)
T ss_pred chhhhcCCchhccccccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCC
Confidence 1111111111233344567999988764 77899999987665433211 1 0000 000 1 1222 56
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCC-cEEEEEcCCCccccccccCCCcccc
Q 001343 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN-GFKILANAIGLRSLRAVENPPFEAL 676 (1096)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~ 676 (1096)
++++..+. |+..+.+...+-.++.-. ...|.-..+..+++-++.|..|| .+-|+|..++.
T Consensus 333 d~ia~VSR-GkaFi~~~~~~~~iqv~~----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-------------- 393 (668)
T COG4946 333 DYIALVSR-GKAFIMRPWDGYSIQVGK----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-------------- 393 (668)
T ss_pred cEEEEEec-CcEEEECCCCCeeEEcCC----CCceEEEEEccCCcceEEeccCCceEEEEecCCce--------------
Confidence 67766664 677777766555444322 22466666666777777888877 67777776551
Q ss_pred cCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEE
Q 001343 677 RTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVT 756 (1096)
Q Consensus 677 ~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 756 (1096)
.. .
T Consensus 394 ---------------------------------------------------------------------------~k--r 396 (668)
T COG4946 394 ---------------------------------------------------------------------------VK--R 396 (668)
T ss_pred ---------------------------------------------------------------------------EE--E
Confidence 00 1
Q ss_pred cCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeee
Q 001343 757 MPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 836 (1096)
Q Consensus 757 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~ 836 (1096)
+.+ .-+.|.++..+++|+.++++.....+.+.+++. |....+.- ...+-|+.
T Consensus 397 ~e~---~lg~I~av~vs~dGK~~vvaNdr~el~vididn----------------------gnv~~idk---S~~~lItd 448 (668)
T COG4946 397 IEK---DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN----------------------GNVRLIDK---SEYGLITD 448 (668)
T ss_pred eeC---CccceEEEEEcCCCcEEEEEcCceEEEEEEecC----------------------CCeeEecc---cccceeEE
Confidence 111 345677888889998777777666776666533 22111111 14667999
Q ss_pred eeecCCCcEEEEec-CC----eEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEee
Q 001343 837 IALSKNDSYVMSAT-GG----KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT 892 (1096)
Q Consensus 837 l~~s~dg~~la~~~-dg----~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~ 892 (1096)
++|+|+++++|-+- +| .|+++|+.+++....- ...+.-.+-+|.| |+++|..-+
T Consensus 449 f~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~-d~ryLYfLs 507 (668)
T COG4946 449 FDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDP-DGRYLYFLS 507 (668)
T ss_pred EEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcccCC-CCcEEEEEe
Confidence 99999999999987 44 4999999887776543 3344455778999 899887654
No 220
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.1e-13 Score=143.46 Aligned_cols=285 Identities=14% Similarity=0.140 Sum_probs=211.3
Q ss_pred eEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccC--CCCEEEEEE
Q 001343 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV--PISVSRVAW 414 (1096)
Q Consensus 337 ~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~ 414 (1096)
++.-|.|...-+.|..+|||+|++|+|...-.|++||+.+-... |..| ...|.-.-+
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK---------------------FERhlDae~V~feiL 102 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK---------------------FERHLDAEVVDFEIL 102 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceee---------------------eeecccccceeEEEe
Confidence 35557788889999999999999999999999999999875543 3334 334666666
Q ss_pred cCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCC
Q 001343 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1096)
Q Consensus 415 spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~ 493 (1096)
|.|-..++.-..|.+|.+-.-- |.-.. + .-...-.+++++.-.. -|..++....|+-.+ ..|+.+..|...
T Consensus 103 sDD~SK~v~L~~DR~IefHak~-G~hy~----~-RIP~~GRDm~y~~~sc--Dly~~gsg~evYRlNLEqGrfL~P~~~~ 174 (703)
T KOG2321|consen 103 SDDYSKSVFLQNDRTIEFHAKY-GRHYR----T-RIPKFGRDMKYHKPSC--DLYLVGSGSEVYRLNLEQGRFLNPFETD 174 (703)
T ss_pred ccchhhheEeecCceeeehhhc-Ceeee----e-ecCcCCccccccCCCc--cEEEeecCcceEEEEccccccccccccc
Confidence 7776677777778887654322 11111 0 0112234555554444 245555566788888 899999999888
Q ss_pred CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC------CCC-----cEEEEEEcCCCCEEEEEeeccCC
Q 001343 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA------PGH-----WCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~-----~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
.+.++++..++.. .+|++|+.+|.|.+||.+.......+.. +.. .|+++.|+.+|-.+++|..
T Consensus 175 ~~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts---- 248 (703)
T KOG2321|consen 175 SGELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS---- 248 (703)
T ss_pred cccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----
Confidence 8999999987643 6899999999999999987766554432 222 5999999999999999987
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC--CCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCC
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT--QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1096)
.|.+.|||+++.+++..-.....-+|..+.|.+. ++.+++. ....++|||-.+|+....+.... .++.+++-|+
T Consensus 249 ~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p~ 324 (703)
T KOG2321|consen 249 TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS---DLNDFCFVPG 324 (703)
T ss_pred CCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccC---CcCceeeecC
Confidence 9999999999988876655444447777888765 3444444 45789999999999988887543 5899999999
Q ss_pred CCEEEEEECCCcEEEEEcCC
Q 001343 641 GNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 641 ~~~l~~~~~dg~i~iwd~~~ 660 (1096)
+.+++++-.++.+..|=+..
T Consensus 325 sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 325 SGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred CceEEEecCCCcceeEEccc
Confidence 99999999988887776543
No 221
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=2.2e-13 Score=154.76 Aligned_cols=217 Identities=15% Similarity=0.159 Sum_probs=146.9
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEeCC---CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC
Q 001343 340 SLHQGSTVISMDFHPSHQTLLLVGSSN---GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1096)
Q Consensus 340 ~l~h~~~V~~v~fsp~g~~llasg~~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1096)
...|...|.+.+|||||++ ||..+.+ ..|.+||+.+++.... ..+.+| ..+++|+|
T Consensus 199 lt~~~~~v~~p~wSPDG~~-la~~s~~~~~~~i~i~dl~tg~~~~l-----------------~~~~g~---~~~~~wSP 257 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDGSK-LAYVSFENKKSQLVVHDLRSGARKVV-----------------ASFRGH---NGAPAFSP 257 (429)
T ss_pred eccCCCccccceEcCCCCE-EEEEEecCCCcEEEEEeCCCCceEEE-----------------ecCCCc---cCceeECC
Confidence 3458889999999999995 5555433 4799999988764321 012333 34689999
Q ss_pred CCCEEEEEE-CCCeEEEE--EccCCCccccceeecccccCEEEEEEecCCCcEEEEE-EeCCCcEEEEE--cCCceEEEe
Q 001343 417 DGNYVGVAF-TKHLIQLY--SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVT-CGDDKLIKVWE--LSGRKLFNF 490 (1096)
Q Consensus 417 d~~~l~s~~-~dg~i~vw--d~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s-~s~d~~i~iwd--~~~~~~~~~ 490 (1096)
||++|+.++ .+|.+.|| |+.+++. . .+..+...+....|+|||+ .|+. +..++...||+ ..+.....+
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~--~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQ--SILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCC--EEEEEECCCCCceEEEEECCCCCeEEe
Confidence 999998765 57766555 5555543 2 3566777889999999999 4554 44678888887 334433333
Q ss_pred eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEe
Q 001343 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1096)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd 570 (1096)
.+.. ....|+| +|+.|+.++.++. .+||+.++........ ....++.|+|||++++.++. ++...+|+
T Consensus 332 -~~~~--~~~~~Sp--DG~~ia~~~~~~i-~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~----~g~~~~l~ 399 (429)
T PRK01742 332 -GGRG--YSAQISA--DGKTLVMINGDNV-VKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSST----QGLGKVLQ 399 (429)
T ss_pred -cCCC--CCccCCC--CCCEEEEEcCCCE-EEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEc----CCCceEEE
Confidence 3433 4456755 6788888877664 4599887765432222 23456789999999999876 55556565
Q ss_pred C--CCCeeeEEEcCcCccceEEEEEeCC
Q 001343 571 E--SEGTIKRTYAGFRKKSNGVVQFDTT 596 (1096)
Q Consensus 571 ~--~~~~~~~~~~~~~~~~i~~~~~~~~ 596 (1096)
+ .+|+.++.+..+.. .+...+|+|-
T Consensus 400 ~~~~~G~~~~~l~~~~g-~~~~p~wsp~ 426 (429)
T PRK01742 400 LVSADGRFKARLPGSDG-QVKFPAWSPY 426 (429)
T ss_pred EEECCCCceEEccCCCC-CCCCcccCCC
Confidence 4 35777888877665 5667888874
No 222
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.56 E-value=4.8e-09 Score=127.54 Aligned_cols=421 Identities=9% Similarity=0.090 Sum_probs=246.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEE----EccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLY----SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vw----d~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
..+.|.++.+-++...|+.+..+|.|.+. +..+.. +. ....-...|.+++||||+. .|+..+.++++.+-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 45789999999999999999999999999 444432 22 2334567899999999999 77777778888775
Q ss_pred EcCCceEEE------------------------eeCCCC------------------Ce----EEEEeeecCCCcEEEEE
Q 001343 481 ELSGRKLFN------------------------FEGHEA------------------PV----YSICPHHKENIQFIFST 514 (1096)
Q Consensus 481 d~~~~~~~~------------------------~~~~~~------------------~v----~~~~~~~~~~~~~l~s~ 514 (1096)
+.+..++.. |.|..+ .+ ..+.++..+||.++++.
T Consensus 148 t~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 148 TRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred eccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence 533222211 111100 01 22334447799999988
Q ss_pred EC---C---CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcC---cCc
Q 001343 515 AI---D---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG---FRK 585 (1096)
Q Consensus 515 ~~---d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~---~~~ 585 (1096)
+. . +.+|||+-+ +........-.+--.+++|-|.|+++++... ..+...|.+|. ++|-....|.- ...
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~~~~~ 304 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRFDPEE 304 (928)
T ss_pred EEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCCCCCC
Confidence 75 2 579999754 3222222222334467899999999998875 23345666776 44444444433 233
Q ss_pred cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEE--EEeecCCCCCCccEEEEeC-CCCEEEEEECCCcEEEEEcCCCc
Q 001343 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL--TSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGL 662 (1096)
Q Consensus 586 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~ 662 (1096)
..+..+.|++++..|+....|. |.+|...+...- +.+..... ..+..+.|+| +...|...+.+|.+..++..-..
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v 382 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV 382 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEE
Confidence 4788899999999999987665 999999886543 33332222 2455699999 44667777777888776653210
Q ss_pred cccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCcccee
Q 001343 663 RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (1096)
Q Consensus 663 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~ 742 (1096)
..-...... -.++..--||..+ .+-.
T Consensus 383 ~~s~~~~~~--------D~g~vaVIDG~~l----------------------------------------------llTp 408 (928)
T PF04762_consen 383 SRSPGSSPN--------DNGTVAVIDGNKL----------------------------------------------LLTP 408 (928)
T ss_pred EecCCCCcc--------CceEEEEEeCCeE----------------------------------------------EEec
Confidence 000000000 0012222333332 2211
Q ss_pred eeee--ecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCcccc
Q 001343 743 LAEI--VDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL 820 (1096)
Q Consensus 743 ~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~ 820 (1096)
+... .++-....+.+ ...|.+++|++++..+++...||.+.+|.++............ .+.......
T Consensus 409 f~~a~VPPPMs~~~l~~------~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 477 (928)
T PF04762_consen 409 FRRAVVPPPMSSYELEL------PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKL-----LSSISLDSM 477 (928)
T ss_pred ccccCCCchHhceEEcC------CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcch-----hhhcccccc
Confidence 1111 11223334443 4589999999999889999999999999976543221100000 000000000
Q ss_pred ccccccCCCcCCCeeeeeecCCCcEEEEecC----CeEEEEEcccce---EEEeecCCCCCeeEEEEecCCCcEEEEeeC
Q 001343 821 MANDVAGVNLEEAVPCIALSKNDSYVMSATG----GKISLFNMMTFK---VMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893 (1096)
Q Consensus 821 ~~~~~~g~~~~~~v~~l~~s~dg~~la~~~d----g~v~iwd~~~~~---~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~ 893 (1096)
...... .....+..++|..++.+++.... ..+.++++...+ .+.....-.+.+..+...+ +...++.-..
T Consensus 478 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~ 554 (928)
T PF04762_consen 478 DISDSE--LPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQTN 554 (928)
T ss_pred cccccc--cccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEEC
Confidence 000000 12456788888888877776663 458888874332 2333333344555555555 4445777777
Q ss_pred CCeEEEEeecc
Q 001343 894 DSTIHIYNVRV 904 (1096)
Q Consensus 894 dg~i~iw~~~~ 904 (1096)
||.+...+...
T Consensus 555 ~G~v~~~~~~~ 565 (928)
T PF04762_consen 555 DGKVFQLSSDG 565 (928)
T ss_pred CCEEEEeecCC
Confidence 88877555444
No 223
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.55 E-value=4.7e-13 Score=131.10 Aligned_cols=234 Identities=18% Similarity=0.190 Sum_probs=180.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cC
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~ 483 (1096)
-..+|+|.+|++|+..+|++.....|.||....++......++..|...|++++|+|..+ .|++|+.|..-++|. ..
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 356899999999999999999999999999998886777778999999999999999998 799999999999999 34
Q ss_pred Cc---eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee----EEeCCCCcEEEEEEcCCCCEEEEE
Q 001343 484 GR---KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSC 556 (1096)
Q Consensus 484 ~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~l~~s~~~~~l~~~ 556 (1096)
+. +.-.+..+....+++.|+|. ++.+++|+.-..|.+|-++....-. .-......|.++.|+|++-.+++|
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~--enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPK--ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCc--CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 43 34456668889999999885 4689999999999999877544332 223445579999999999999999
Q ss_pred eeccCCCCeEEEEeCC-----C-------------CeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe
Q 001343 557 GTSKDGDSFLVEWNES-----E-------------GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 557 ~~~~~~~~~i~iwd~~-----~-------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1096)
+. |+..+++..- . |+++..+. ....-+..+.|+|+|+.|+-.+.|..+.+-|.....
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 88 8888887531 0 22333333 223378889999999999999999999999987654
Q ss_pred -EEEEeecCCCCCCccEEEEeCCCCEEEEEECC
Q 001343 619 -ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 619 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
.+....... -+..++.|-.+...+ .++.|
T Consensus 240 ~~v~~~~~~~--lP~ls~~~ise~~vv-~ag~~ 269 (361)
T KOG1523|consen 240 ERVQSVATAQ--LPLLSVSWISENSVV-AAGYD 269 (361)
T ss_pred hhccchhhcc--CCceeeEeecCCcee-ecCCC
Confidence 333333222 266777777655444 44444
No 224
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1.5e-14 Score=158.63 Aligned_cols=341 Identities=18% Similarity=0.217 Sum_probs=220.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCCCCcCCCCCCccccCCCCCCCCCCCCCCCCCCCccccchh
Q 001343 169 SRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPPTAAAANAN 248 (1096)
Q Consensus 169 ~rL~~Ll~qa~~~q~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~~~~~ 248 (1096)
-.|..|+-|.++.|+.+|++|.+..+.+|||..|+|+++... ...|.|........ +-+ +
T Consensus 1013 ~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~-~~ap~N~t~Rl~~r-el~-------~----------- 1072 (1516)
T KOG1832|consen 1013 LSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRL-LEAPLNMTGRLGTR-ELQ-------S----------- 1072 (1516)
T ss_pred CcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHH-hhcchhhhhcccch-hhc-------C-----------
Confidence 359999999999999999999999999999999999996522 22333322210000 000 0
Q ss_pred hhhhhhhcCCCCcccccccccCCCCCCCCCccccccCCCCCCCCceeecCCccHHHHHhhcCCCCCCCceeecCCCceee
Q 001343 249 ALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQTW 328 (1096)
Q Consensus 249 ~~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 328 (1096)
.+.+++ -...+..-+..|++.
T Consensus 1073 --------------~y~gV~----------------------------g~~~dr~~IFSRFr~----------------- 1093 (1516)
T KOG1832|consen 1073 --------------FYSGVH----------------------------GNRRDRQFIFSRFRS----------------- 1093 (1516)
T ss_pred --------------cccccc----------------------------cCcccchhhHhhccc-----------------
Confidence 111111 111222334444444
Q ss_pred ecCCCCcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCC
Q 001343 329 SLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI 407 (1096)
Q Consensus 329 ~~~~~~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 407 (1096)
.++++ |+..-+|++||-+.+ .|++|+..|.|+++++.+|..... ..+|.+
T Consensus 1094 ---------w~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~S 1144 (1516)
T KOG1832|consen 1094 ---------WRSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQS 1144 (1516)
T ss_pred ---------chhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------cccccc
Confidence 44555 788999999999988 699999999999999999987653 778999
Q ss_pred CEEEEEEcCCCCEEEEEECCC--eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC
Q 001343 408 SVSRVAWSPDGNYVGVAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~ 484 (1096)
+|+-+.-|.||..+++.+.-. ...+|++.+.-..+ .++. .-.++.|+.... .-+.|.....+.+|| .++
T Consensus 1145 avT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~--Hsf~----ed~~vkFsn~~q--~r~~gt~~d~a~~YDvqT~ 1216 (1516)
T KOG1832|consen 1145 AVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPR--HSFD----EDKAVKFSNSLQ--FRALGTEADDALLYDVQTC 1216 (1516)
T ss_pred ccccccccCCcceeeeeccccCchHHHhccccccCcc--cccc----ccceeehhhhHH--HHHhcccccceEEEecccC
Confidence 999999999999888765433 46789987522221 1222 346788887655 334455556788999 888
Q ss_pred ceEEEe-eC---CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 485 RKLFNF-EG---HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 485 ~~~~~~-~~---~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
.++.++ .+ ....-++..|+|. ..+++- || .+||++..+.+..+..-.. -..-.|+|.|..++..+
T Consensus 1217 ~~l~tylt~~~~~~y~~n~a~FsP~--D~LIln---dG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS--- 1285 (1516)
T KOG1832|consen 1217 SPLQTYLTDTVTSSYSNNLAHFSPC--DTLILN---DG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS--- 1285 (1516)
T ss_pred cHHHHhcCcchhhhhhccccccCCC--cceEee---Cc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec---
Confidence 877663 22 1112245667664 345443 45 4699998877665543331 22346899999998865
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE--cC---------------CeEEEEeCCCCeEEEEe
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--ED---------------SQIKFWDMDNVNILTST 623 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d---------------g~i~iwd~~~~~~~~~~ 623 (1096)
.|||+++.+.++....-.. +.+.|+..|+.++..- .| ...+-++......+.++
T Consensus 1286 ------EIwD~RTF~lLh~VP~Ldq---c~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi 1356 (1516)
T KOG1832|consen 1286 ------EIWDMRTFKLLHSVPSLDQ---CAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATI 1356 (1516)
T ss_pred ------hhhhhHHHHHHhcCccccc---eEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceee
Confidence 3699999998887765433 4477888887665432 00 12344455555556666
Q ss_pred ecCCCCCCccEEEEeCCCCEEEEEE
Q 001343 624 DAEGGLPNLPRLRFSKEGNLLAVTT 648 (1096)
Q Consensus 624 ~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1096)
.... .+..++-.|...++++-.
T Consensus 1357 ~v~R---~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1357 PVDR---CLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred eccc---chhhhhcCCccceEEEEe
Confidence 5443 456666666666665543
No 225
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=7.7e-12 Score=134.60 Aligned_cols=534 Identities=11% Similarity=0.114 Sum_probs=308.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCc------------cccceeecccccCEEEEEEecCCCcEEEEEEe
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND------------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG 472 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~------------~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s 472 (1096)
......|++|+....|+|+|+.||.++|..+.+... +..-.++.||++.|.-+.|+...+ .|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 455789999999999999999999999998865322 111136789999999999999888 799999
Q ss_pred CCCcEEEEE-cCCceEEEe--eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCC
Q 001343 473 DDKLIKVWE-LSGRKLFNF--EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD 549 (1096)
Q Consensus 473 ~d~~i~iwd-~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~ 549 (1096)
.+|.|.+|- ..|.-...+ ....+.|.+++|+. +|..|.....||.|.+=.++.. .+.--...+.....+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavIVGsvdGN-RIwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVIVGSVDGN-RIWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEEEEeeccc-eecchhcchheccceeeccc
Confidence 999999998 666543332 22455688888865 7788888888888876554422 12211222334557889999
Q ss_pred CCEEEEEeeccCCCCeEEEEeCCCCe-------eeEEEcCc---CccceEEEEEe--------CCCCEEEEEEcCCeEEE
Q 001343 550 GSRLFSCGTSKDGDSFLVEWNESEGT-------IKRTYAGF---RKKSNGVVQFD--------TTQNHFLAVGEDSQIKF 611 (1096)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~~~~~-------~~~~~~~~---~~~~i~~~~~~--------~~~~~l~~~~~dg~i~i 611 (1096)
.+.++.+-. .|.+.++|....- +.....+. ....+..+.|. |+...++++-.+|.+.+
T Consensus 168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 998887765 7889999875321 11111110 00123334432 57788999999999988
Q ss_pred EeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeE-EeecCCC
Q 001343 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV-ALKVSAS 690 (1096)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~ 690 (1096)
..-.+......+... -.+..+.|+++|..||+++.+..- ... .. .+.+ -++|-|.
T Consensus 244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da-----~~~--------~d--------~n~v~Fysp~G~ 299 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDA-----DEP--------TD--------SNKVHFYSPYGH 299 (1189)
T ss_pred hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccc-----cCc--------cc--------cceEEEeccchh
Confidence 866554433333322 267889999999999999876321 000 00 0011 2233333
Q ss_pred eEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEE
Q 001343 691 SAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRL 770 (1096)
Q Consensus 691 ~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 770 (1096)
.+ ..+.. ....|+++
T Consensus 300 i~------------------------------------------------------------gtlkv-----pg~~It~l 314 (1189)
T KOG2041|consen 300 IV------------------------------------------------------------GTLKV-----PGSCITGL 314 (1189)
T ss_pred he------------------------------------------------------------EEEec-----CCceeeee
Confidence 22 11122 23455566
Q ss_pred EEecCCceEEEeecCCeEEEeeccCCc----------cCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeec
Q 001343 771 LYTNSAVGLLALGSNGVQKLWKWHRNE----------QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1096)
Q Consensus 771 ~~s~~~~~l~~~~~dg~v~vw~~~~~~----------~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s 840 (1096)
.|-..|-.+ +..-|+.|.+=++...- +--.+.-.....|..||..+.+...... ....+++++
T Consensus 315 sWEg~gLri-A~AvdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V------~~~~~~a~~ 387 (1189)
T KOG2041|consen 315 SWEGTGLRI-AIAVDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTV------THFENMAFY 387 (1189)
T ss_pred EEcCCceEE-EEEecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhh------cceeehhee
Confidence 665555422 22233344333321110 0000111122256678877665433222 235578887
Q ss_pred CCCcEEEEec-CCeEEEEEc-ccceEEEeec-----CC--CCCeeEE--EEecCCCcEEEEeeCCCeEEEEeecccee--
Q 001343 841 KNDSYVMSAT-GGKISLFNM-MTFKVMTTFM-----SP--PPASTFL--AFHPQDNNIIAIGTEDSTIHIYNVRVDEL-- 907 (1096)
Q Consensus 841 ~dg~~la~~~-dg~v~iwd~-~~~~~~~~~~-----~h--~~~i~~l--~~s~~d~~~l~s~~~dg~i~iw~~~~~~~-- 907 (1096)
.+--.|++-. +|.+.-++. .+...+-.+. +. ....+.+ .|.--++..++.++.+ .+.+|.....+.
T Consensus 388 ~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s 466 (1189)
T KOG2041|consen 388 REHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNS 466 (1189)
T ss_pred cccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhh
Confidence 7776777665 466655532 1111111100 00 1111111 2222156667777766 488998765440
Q ss_pred --e--------eeeccccccc-cce----eeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccC
Q 001343 908 --C--------VWSIDTWEKR-KSV----TIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQ 971 (1096)
Q Consensus 908 --~--------~w~~~~~~~~-~~~----~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~ 971 (1096)
. -+..|..... ..+ ...++.|... +|..++.| .++|.+ -..|.|.-|.+.++.......
T Consensus 467 ~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~D-pICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~-- 541 (1189)
T KOG2041|consen 467 VLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKD-PICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYP-- 541 (1189)
T ss_pred hhhhhhhcccccccCCCCccchhhceeeccceeeccCCC-cceeeeec--ceEEEEEeccCceEEEEecceeeeeccc--
Confidence 0 0111110000 000 1123334333 66666654 455555 578899999998877655443
Q ss_pred CCCCCCceEEEEeeCCcEEEEEecCCcEEEEecC---CCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEE
Q 001343 972 DALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD---TLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIG 1048 (1096)
Q Consensus 972 ~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~ 1048 (1096)
.+..|.++++..+...+|+..--|.+.+.|++ +|..+..+.. +....|| ++.|.. |...|+.-
T Consensus 542 --~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~---------~errDVW--d~~Wa~-dNp~llAl 607 (1189)
T KOG2041|consen 542 --VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYT---------SERRDVW--DYEWAQ-DNPNLLAL 607 (1189)
T ss_pred --cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeeh---------hhhhhhh--hhhhcc-CCchHHhh
Confidence 37789999999999999998888999998887 3332222210 0234688 578887 44444444
Q ss_pred eeCCcEEEEccCCCC
Q 001343 1049 LTDGSVKVMEPSESE 1063 (1096)
Q Consensus 1049 ~~dg~i~vW~v~~~~ 1063 (1096)
-+...++|++-.+.+
T Consensus 608 meKtrmyifrgndpe 622 (1189)
T KOG2041|consen 608 MEKTRMYIFRGNDPE 622 (1189)
T ss_pred hhhceEEEecCcCcc
Confidence 556677777766554
No 226
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=3.2e-11 Score=118.50 Aligned_cols=238 Identities=12% Similarity=0.169 Sum_probs=168.8
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeeccccc--CEEEEEEecCCCcEEEEEEeC-----CCcEEEE
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG--AVNDLAFAYPNKLLCVVTCGD-----DKLIKVW 480 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~--~v~~l~~s~d~~~~~l~s~s~-----d~~i~iw 480 (1096)
....++|+.|...+++|..+| .+||+++--+... ...-+.+ .+.-|-|- .+.+.|+-|+. -..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEE
Confidence 345599999999999887664 7899987533211 1111222 22333332 33223333332 2579999
Q ss_pred E-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcC-CCCeeeEEeCCC--CcEEEEEEcCCCCEEEEE
Q 001343 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGSRVDYDAPG--HWCTTMLYSADGSRLFSC 556 (1096)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~--~~i~~l~~s~~~~~l~~~ 556 (1096)
| ...+++.++. ...+|.++.+.+ ..|++. .++.|.+|.+. +.+....+.... ....+++-+.+...|+.-
T Consensus 81 DD~k~~~i~el~-f~~~I~~V~l~r----~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 81 DDLKERCIIELS-FNSEIKAVKLRR----DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred ecccCcEEEEEE-eccceeeEEEcC----CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence 9 8888888887 677899999854 345544 46889999887 444444443322 234444433343444443
Q ss_pred eeccCCCCeEEEEeCCCCee--eEEEcCcCccceEEEEEeCCCCEEEEEEcCCe-EEEEeCCCCeEEEEeecCCCCCCcc
Q 001343 557 GTSKDGDSFLVEWNESEGTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLP 633 (1096)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1096)
+. ..|.|.+-|+...+. ...+..|.. .|.+++.+-+|..+++++..|+ |+|||..+|..+..+.-......|.
T Consensus 155 g~---k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 155 GF---KTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred CC---ccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 32 368999999876655 467788877 8999999999999999999886 8999999999999998766667899
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 634 RLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+++|||++.+||++++.|++.||.+...
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999999999998764
No 227
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=9.6e-12 Score=131.53 Aligned_cols=353 Identities=13% Similarity=0.111 Sum_probs=221.6
Q ss_pred CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEE-----E-----cCC
Q 001343 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-----G-----EDS 607 (1096)
Q Consensus 538 ~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-----~-----~dg 607 (1096)
...+...+++++|++++.+. +..+.|++..++..+.+.... ....+.|+|-+.++.+- . ...
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~p 105 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKNASNP 105 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCCCCCC
Confidence 33577889999999998876 778999999888654444432 56779999999988762 1 234
Q ss_pred eEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeec
Q 001343 608 QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (1096)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 687 (1096)
.+.+|++.++.....+...... -++..|+.|..+.+-. ..+.+.+|++.+... .....+...++.+.+||
T Consensus 106 n~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~-------~~~kl~~~~i~~f~lSp 175 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAARL-VSNEVQFYDLGSFKT-------IQHKLSVSGITMLSLSP 175 (566)
T ss_pred ceeeeeeccceehhheehhhhc--Ccccccccchhhhhhh-hcceEEEEecCCccc-------eeeeeeccceeeEEecC
Confidence 5789999996666555544332 2688898887544332 345799999876422 22222344567788888
Q ss_pred CCCe-EEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCccc
Q 001343 688 SASS-AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSK 766 (1096)
Q Consensus 688 ~g~~-lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1096)
.+.. .++...++ ..+.-..++||.+...........-. .....
T Consensus 176 gp~~~~vAvyvPe-------------------------------~kGaPa~vri~~~~~~~~~~~~a~ks-----FFkad 219 (566)
T KOG2315|consen 176 GPEPPFVAVYVPE-------------------------------KKGAPASVRIYKYPEEGQHQPVANKS-----FFKAD 219 (566)
T ss_pred CCCCceEEEEccC-------------------------------CCCCCcEEEEeccccccccchhhhcc-----ccccc
Confidence 7433 33433322 22333667888876311111111101 12233
Q ss_pred EEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEE
Q 001343 767 VVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1096)
Q Consensus 767 i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~l 846 (1096)
-..+.|++-|..|+..... +++....+=.|+. ++.+.+++ |....+.+. -.++|.++.|+|+|+-+
T Consensus 220 kvqm~WN~~gt~LLvLast------dVDktn~SYYGEq----~Lyll~t~-g~s~~V~L~---k~GPVhdv~W~~s~~EF 285 (566)
T KOG2315|consen 220 KVQMKWNKLGTALLVLAST------DVDKTNASYYGEQ----TLYLLATQ-GESVSVPLL---KEGPVHDVTWSPSGREF 285 (566)
T ss_pred eeEEEeccCCceEEEEEEE------eecCCCccccccc----eEEEEEec-CceEEEecC---CCCCceEEEECCCCCEE
Confidence 4467788877665443321 1111111111111 22333333 333333444 37899999999999887
Q ss_pred EEecC---CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCC---CeEEEEeeccceeeeeeccccccccc
Q 001343 847 MSATG---GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED---STIHIYNVRVDELCVWSIDTWEKRKS 920 (1096)
Q Consensus 847 a~~~d---g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~d---g~i~iw~~~~~~~~~w~~~~~~~~~~ 920 (1096)
++... -++.|||+ .+..+..+ ..++-+++-|+| .|++++.++-+ |.|.|||+.+.+
T Consensus 286 ~VvyGfMPAkvtifnl-r~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K-------------- 347 (566)
T KOG2315|consen 286 AVVYGFMPAKVTIFNL-RGKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRK-------------- 347 (566)
T ss_pred EEEEecccceEEEEcC-CCCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchh--------------
Confidence 77663 77999998 55666655 567778999999 89998887754 789999999866
Q ss_pred eeeecCCCCCCCCCceEEEecCCcEEEEE-------ecceEEEEEcccceeccccccCCCCCCCceEEEEee
Q 001343 921 VTIHIPAGKTPTGDTRVQFNADQVRMLVV-------HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 985 (1096)
Q Consensus 921 ~~~~~~~~~~~~~v~~v~fs~dg~~l~~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~ 985 (1096)
++..+... .-+-+.|+|||.+++++ -|..++||++.. ..+....- ......+.|-|
T Consensus 348 -~i~~~~a~---~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG-~~l~~~~f----~sEL~qv~W~P 410 (566)
T KOG2315|consen 348 -LIAKFKAA---NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG-SLLHEKMF----KSELLQVEWRP 410 (566)
T ss_pred -hccccccC---CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC-ceeehhhh----hHhHhheeeee
Confidence 44445443 45778999999999993 288899999974 43333221 22567778776
No 228
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=6e-12 Score=125.27 Aligned_cols=285 Identities=14% Similarity=0.159 Sum_probs=185.8
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC-CCEEEE
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGV 423 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~~l~s 423 (1096)
..+..++|++.-- -+|++..|-.|+|||-.. ..... +-......|+|++|-|. ++-|++
T Consensus 99 ~dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt~------------------Lks~sQrnvtclawRPlsaselav 158 (445)
T KOG2139|consen 99 IDLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPTK------------------LKSVSQRNVTCLAWRPLSASELAV 158 (445)
T ss_pred cceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCce------------------ecchhhcceeEEEeccCCcceeee
Confidence 3578899999655 488899999999999665 22111 01123568999999995 556777
Q ss_pred EECCCeEEEEEccCCCcc-----------ccceeecccccCEEEEEEecCCCcEEEEEEeC-CCcEEEEE-cCCceEEEe
Q 001343 424 AFTKHLIQLYSYAGSNDL-----------RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWE-LSGRKLFNF 490 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~-----------~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~-d~~i~iwd-~~~~~~~~~ 490 (1096)
|+. +-|.+|........ ..+..-.+| .+|++|.|.+||. .+++++. |..|.||| .+|..+.-.
T Consensus 159 gCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~ 234 (445)
T KOG2139|consen 159 GCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLI 234 (445)
T ss_pred eec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCccccc
Confidence 776 56889986532111 111123455 6899999999999 7787775 57899999 777665444
Q ss_pred eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEe
Q 001343 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1096)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd 570 (1096)
....+.+.-+.|+| |+.+|+++..|+..++|+....-.........+.|...+|+|+|++|+.... +...++-..
T Consensus 235 ~~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s---gsp~lysl~ 309 (445)
T KOG2139|consen 235 PKGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS---GSPRLYSLT 309 (445)
T ss_pred ccCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc---CCceEEEEe
Confidence 34556788899977 6689999999999999965543333334444558999999999998876553 122332211
Q ss_pred CC--CCe-----------eeEEE------cC--cCccceEEEEEeCCCCEEEEEEcC--------CeEEEEeCCCCeEEE
Q 001343 571 ES--EGT-----------IKRTY------AG--FRKKSNGVVQFDTTQNHFLAVGED--------SQIKFWDMDNVNILT 621 (1096)
Q Consensus 571 ~~--~~~-----------~~~~~------~~--~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~ 621 (1096)
.. .+. ++..+ .+ .-.....+++|+|.|.++++.-.. +.|.+||.+..-.+.
T Consensus 310 f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ve 389 (445)
T KOG2139|consen 310 FDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVE 389 (445)
T ss_pred ecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceE
Confidence 11 100 00001 01 012356779999999999986543 346778776544433
Q ss_pred Eee-cCCCCCCccEEEEeC---CCCEEEEEECCCcEEEEEc
Q 001343 622 STD-AEGGLPNLPRLRFSK---EGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 622 ~~~-~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd~ 658 (1096)
... +........-++|+| ++.+|.++-+.|.+.-|++
T Consensus 390 ls~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 390 LSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred EEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 321 111112346677777 6788888888888888776
No 229
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2.8e-12 Score=127.61 Aligned_cols=189 Identities=12% Similarity=0.133 Sum_probs=133.8
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCC-EEEEEeeccCCCCeEEEEeCCCC
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
.+..++|++.- ..++++..|-.|++|+-...............|++++|-|.+. .+++++ .+.|.+|.....
T Consensus 100 dlr~~aWhqH~--~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgC-----r~gIciW~~s~t 172 (445)
T KOG2139|consen 100 DLRGVAWHQHI--IAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGC-----RAGICIWSDSRT 172 (445)
T ss_pred ceeeEeechhh--hhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeee-----cceeEEEEcCcc
Confidence 46667787632 4578899999999998776333333333445899999999765 444444 778999986521
Q ss_pred ----e--------eeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCC
Q 001343 575 ----T--------IKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1096)
Q Consensus 575 ----~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1096)
. ..+.++......|+++.|.+||..+++++ .|..|.|||.+++..+...... .+.+.-+.||||+
T Consensus 173 ln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g--lgg~slLkwSPdg 250 (445)
T KOG2139|consen 173 LNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG--LGGFSLLKWSPDG 250 (445)
T ss_pred cccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC--CCceeeEEEcCCC
Confidence 1 11222222234899999999999999987 6778999999998877665332 2378899999999
Q ss_pred CEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCC
Q 001343 642 NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPA 699 (1096)
Q Consensus 642 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~ 699 (1096)
.+|++++-|+..++|+........+-..+ .+.|+...|+|+|+.+....+..
T Consensus 251 d~lfaAt~davfrlw~e~q~wt~erw~lg------sgrvqtacWspcGsfLLf~~sgs 302 (445)
T KOG2139|consen 251 DVLFAATCDAVFRLWQENQSWTKERWILG------SGRVQTACWSPCGSFLLFACSGS 302 (445)
T ss_pred CEEEEecccceeeeehhcccceecceecc------CCceeeeeecCCCCEEEEEEcCC
Confidence 99999999999999976544233222222 33588899999999985554433
No 230
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=4.5e-12 Score=143.57 Aligned_cols=236 Identities=12% Similarity=0.117 Sum_probs=156.1
Q ss_pred CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC---CCeEEEEEccCCCcccc
Q 001343 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQ 443 (1096)
Q Consensus 367 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~---dg~i~vwd~~~~~~~~~ 443 (1096)
..|.+||.+.+.... +..+...+.+.+|||||+.|+..+. +..|.+|++.+++...
T Consensus 179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~- 237 (429)
T PRK03629 179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ- 237 (429)
T ss_pred eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-
Confidence 378888877544321 3446678999999999999987643 3579999998875332
Q ss_pred ceeecccccCEEEEEEecCCCcEEEE-EEeCCC--cEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC-CC
Q 001343 444 HSQIDAHVGAVNDLAFAYPNKLLCVV-TCGDDK--LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG 518 (1096)
Q Consensus 444 ~~~l~~h~~~v~~l~~s~d~~~~~l~-s~s~d~--~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg 518 (1096)
+....+.+....|+|||+ .|+ +.+.++ .|++|| .+++ +..+..+...+....|+| +|+.|+..+. +|
T Consensus 238 ---l~~~~~~~~~~~~SPDG~--~La~~~~~~g~~~I~~~d~~tg~-~~~lt~~~~~~~~~~wSP--DG~~I~f~s~~~g 309 (429)
T PRK03629 238 ---VASFPRHNGAPAFSPDGS--KLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFP--DSQNLAYTSDQAG 309 (429)
T ss_pred ---ccCCCCCcCCeEECCCCC--EEEEEEcCCCCcEEEEEECCCCC-EEEccCCCCCcCceEECC--CCCEEEEEeCCCC
Confidence 222333455789999999 444 334454 588899 5554 445554555677888876 6677766665 45
Q ss_pred eEEEE--EcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC
Q 001343 519 KIKAW--LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT 596 (1096)
Q Consensus 519 ~i~iw--d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 596 (1096)
...+| |+.++.. ..+...........|+|||++++..+.. ++...|++||+.+++... +.... ......|+||
T Consensus 310 ~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~~-Lt~~~--~~~~p~~SpD 384 (429)
T PRK03629 310 RPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQV-LTDTF--LDETPSIAPN 384 (429)
T ss_pred CceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeEE-eCCCC--CCCCceECCC
Confidence 55555 5554433 3333344456678999999999877642 234679999998886543 33221 2234779999
Q ss_pred CCEEEEEEcCCe---EEEEeCCCCeEEEEeecCCCCCCccEEEEeC
Q 001343 597 QNHFLAVGEDSQ---IKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1096)
Q Consensus 597 ~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1096)
|+.|+.++.++. +++++++ +.....+..+.. .+...+|+|
T Consensus 385 G~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~--~~~~p~Wsp 427 (429)
T PRK03629 385 GTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDG--QVKFPAWSP 427 (429)
T ss_pred CCEEEEEEcCCCceEEEEEECC-CCCeEECccCCC--CcCCcccCC
Confidence 999999887664 6777874 444555554433 678888887
No 231
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.8e-11 Score=129.53 Aligned_cols=308 Identities=9% Similarity=0.102 Sum_probs=202.2
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
...++..++|++|+ ++|.+ .+..|.|++..++..+.. .....+.++.|||-|.||.+
T Consensus 34 ~~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T 90 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLT 90 (566)
T ss_pred CCcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEE---------------------eccceeeeeeeccccccccc
Confidence 34578899999999 67765 688999999998864432 11227899999999999976
Q ss_pred E-----ECC-----CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCC
Q 001343 424 A-----FTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH 493 (1096)
Q Consensus 424 ~-----~~d-----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 493 (1096)
- ..+ -.+.+|+++++.... . +..-...-++..|+.|.. +++=-..+.+.+|+..+-....-+-|
T Consensus 91 ~e~~~i~~~~~~~~pn~~v~~vet~~~~s-~--~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~~kl~ 164 (566)
T KOG2315|consen 91 WEPWAIYGPKNASNPNVLVYNVETGVQRS-Q--IQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQHKLS 164 (566)
T ss_pred ccccccccCCCCCCCceeeeeeccceehh-h--eehhhhcCcccccccchh---hhhhhhcceEEEEecCCccceeeeee
Confidence 3 122 357799999943322 2 222222227999999886 44444467899999333222222336
Q ss_pred CCCeEEEEeeecCCCcEEEE-----EECCCeEEEEEcCCCCeeeEE---eCCCCcEEEEEEcCCCCEEEE-Eeec-----
Q 001343 494 EAPVYSICPHHKENIQFIFS-----TAIDGKIKAWLYDTMGSRVDY---DAPGHWCTTMLYSADGSRLFS-CGTS----- 559 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~s~~~~~l~~-~~~~----- 559 (1096)
...|+...++|.+....+++ .+.-+.++||.+......... ..-...-..+.|++-|.-|++ ++.+
T Consensus 165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCC
Confidence 77789999988755555554 355678999976522211111 111113345778887775443 3222
Q ss_pred --cCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEE--EEcCCeEEEEeCCCCeEEEEeecCCCCCCccEE
Q 001343 560 --KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA--VGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1096)
Q Consensus 560 --~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1096)
-.++..+++.++....... ......+|.++.|+|+++.+++ |-.-..+.|||++ +.++..+... +=+++
T Consensus 245 ~SYYGEq~Lyll~t~g~s~~V--~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~eg----pRN~~ 317 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESVSV--PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEG----PRNTA 317 (566)
T ss_pred ccccccceEEEEEecCceEEE--ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCC----Cccce
Confidence 2356789999888434333 3333448999999999987765 4466789999985 4555554322 45899
Q ss_pred EEeCCCCEEEEEECC---CcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEec
Q 001343 636 RFSKEGNLLAVTTAD---NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1096)
Q Consensus 636 ~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~ 695 (1096)
-|+|.|++++.++.+ |.+.+||+.+. +++..+.... .+-+.|+|||++++++
T Consensus 318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-K~i~~~~a~~-------tt~~eW~PdGe~flTA 372 (566)
T KOG2315|consen 318 FFNPHGNIILLAGFGNLPGDMEVWDVPNR-KLIAKFKAAN-------TTVFEWSPDGEYFLTA 372 (566)
T ss_pred EECCCCCEEEEeecCCCCCceEEEeccch-hhccccccCC-------ceEEEEcCCCcEEEEE
Confidence 999999999998864 88999999884 5555554432 2346899999988544
No 232
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.8e-13 Score=142.79 Aligned_cols=239 Identities=14% Similarity=0.159 Sum_probs=165.3
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC--CC
Q 001343 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DG 418 (1096)
Q Consensus 341 l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~ 418 (1096)
.+|++-|+|++|+.+|. +|++|+.|-.+.|||....+.++. +-.||...|.|+.|-| +.
T Consensus 47 ~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tnn 107 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTNN 107 (758)
T ss_pred ccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCCC
Confidence 35999999999999999 899999999999999987766653 3578999999999999 57
Q ss_pred CEEEEEECCCeEEEEEccCCC-------ccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC-ceEE-
Q 001343 419 NYVGVAFTKHLIQLYSYAGSN-------DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLF- 488 (1096)
Q Consensus 419 ~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~-~~~~- 488 (1096)
+.+++|..|..|+++|+...+ .......+..|...|..++-.|++.. .+.++++||+|+-+| ... .+-.
T Consensus 108 riv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p~ 186 (758)
T KOG1310|consen 108 RIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNPD 186 (758)
T ss_pred eEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCcc
Confidence 789999999999999998522 12223346689999999999999965 899999999999999 431 2111
Q ss_pred --------EeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE-----eCCCCcEEEEE-EcCCCCEEE
Q 001343 489 --------NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-----DAPGHWCTTML-YSADGSRLF 554 (1096)
Q Consensus 489 --------~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~-~s~~~~~l~ 554 (1096)
.+...--...++.++|.. ..+|++|+.|-..++||.+.......- ........++. |+|.+-
T Consensus 187 ~~~~~~l~ny~~~lielk~ltisp~r-p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl--- 262 (758)
T KOG1310|consen 187 EDCPSILVNYNPQLIELKCLTISPSR-PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL--- 262 (758)
T ss_pred ccccHHHHHhchhhheeeeeeecCCC-CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc---
Confidence 111222345678888874 479999999999999996432221110 00111111221 122211
Q ss_pred EEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001343 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1096)
... ++.+ .... ..++-+.|+|+|.-+++.-..-.|+++|+..++....+
T Consensus 263 -kn~----~gn~----------~~~~-----~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 263 -KNS----QGNL----------DRYI-----TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred -cCc----cccc----------ccce-----eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 000 1101 0000 13455889999988777666668999999887765544
No 233
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.52 E-value=5.4e-14 Score=144.13 Aligned_cols=277 Identities=15% Similarity=0.195 Sum_probs=214.7
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~ 425 (1096)
.-..+.|+.+|++ ++.|+..|.|-.+|+.+++...... -...|.++.|-.+.+++|++-
T Consensus 131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVAQ 189 (545)
T KOG1272|consen 131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVAQ 189 (545)
T ss_pred CCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhhh
Confidence 4577899999995 7778899999999999998775421 234688899999999999884
Q ss_pred CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeee
Q 001343 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (1096)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~ 504 (1096)
...+.|||-.. ..+.+ +.. ...|..+.|.|.-- +|++++..|.++.-| ..|+.+..+..-.+++..++-+|
T Consensus 190 -K~y~yvYD~~G-tElHC---lk~-~~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 190 -KKYVYVYDNNG-TELHC---LKR-HIRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred -hceEEEecCCC-cEEee---hhh-cCchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 46899999654 44443 332 35689999999877 899999999999999 89999999988888888888877
Q ss_pred cCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC
Q 001343 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1096)
Q Consensus 505 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 584 (1096)
.+ ..+-+|...|+|.+|.....+.+..+-.|.++|.++++.++|+++++.+. |..++|||+++...+.++....
T Consensus 262 ~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~tp~ 335 (545)
T KOG1272|consen 262 YN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRTPH 335 (545)
T ss_pred cc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeecCC
Confidence 53 58889999999999999999999999999999999999999999999998 9999999999888776665522
Q ss_pred ccceEEEEEeCCCCEEEEEEcCCeEEEEeC-CC--CeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDM-DN--VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 585 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~-~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+...+++|..| +++.+....+.||.- -. +..-..+-.|.-...|..+.|.|-...|.+|...|.-.+.-...|
T Consensus 336 --~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsG 411 (545)
T KOG1272|consen 336 --PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSG 411 (545)
T ss_pred --Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCC
Confidence 45557777554 444455568999952 22 122222223333448999999998778888877776555544444
No 234
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.52 E-value=7.7e-12 Score=130.37 Aligned_cols=349 Identities=12% Similarity=0.084 Sum_probs=233.1
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 424 (1096)
-++..++|||.|+ +|++. .-..|.+|.......+.. -....|..+.|||.++||.+-
T Consensus 33 ~p~~~~~~SP~G~-~l~~~-~~~~V~~~~g~~~~~l~~---------------------~~~~~V~~~~fSP~~kYL~tw 89 (561)
T COG5354 33 WPVAYVSESPLGT-YLFSE-HAAGVECWGGPSKAKLVR---------------------FRHPDVKYLDFSPNEKYLVTW 89 (561)
T ss_pred cchhheeecCcch-heehh-hccceEEccccchhheee---------------------eecCCceecccCcccceeeee
Confidence 4789999999999 57764 456799999877664432 123469999999999999986
Q ss_pred ECC---------------CeEEEEEccCCCccccceeecccccC--EE-EEEEecCCCcEEEEEEeCCCcEEEEEcCCce
Q 001343 425 FTK---------------HLIQLYSYAGSNDLRQHSQIDAHVGA--VN-DLAFAYPNKLLCVVTCGDDKLIKVWELSGRK 486 (1096)
Q Consensus 425 ~~d---------------g~i~vwd~~~~~~~~~~~~l~~h~~~--v~-~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~ 486 (1096)
+.. ..+.+||+.+|..+.. +.+...+ .+ -+.|+-+++ +++-- ....++|++.+++.
T Consensus 90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~s---f~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~t~n~ 163 (561)
T COG5354 90 SREPIIEPEIEISPFTSKNNVFVWDIASGMIVFS---FNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEITDNI 163 (561)
T ss_pred ccCCccChhhccCCccccCceeEEeccCceeEee---ccccCCcccccceeeeeecch--hhhhh-ccCeEEEEecCCcc
Confidence 543 3499999999887763 4444444 55 788998887 44333 34578888853332
Q ss_pred ----EEEeeCCCCCeEEEEeeecCCCcEEEE-----EECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEe
Q 001343 487 ----LFNFEGHEAPVYSICPHHKENIQFIFS-----TAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 487 ----~~~~~~~~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
...++ ...|....++|.+++..|+. .+.++++++|.+.....+.....-...-..+.|.+.|+++++-.
T Consensus 164 ~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~ 241 (561)
T COG5354 164 EEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLV 241 (561)
T ss_pred ccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEE
Confidence 12222 24577777888766666554 46788999999886666554444333445688889998877533
Q ss_pred e-------ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE--cCCeEEEEeCCCCeEEEEeecCCC
Q 001343 558 T-------SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGG 628 (1096)
Q Consensus 558 ~-------~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~ 628 (1096)
. +.-++..++++++....+.... ...+ +|...+|.|.++.+++.+ .+-.+.++|++.. ....+...
T Consensus 242 ~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~-pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~-- 316 (561)
T COG5354 242 MTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKD-PVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ-- 316 (561)
T ss_pred EEeeecccceeccceEEEEeecccccceec-cccc-cceeeeecccCCceeEEecccccceeecccccc-eEEecCCc--
Confidence 2 1124578899998744333222 3333 899999999988776644 7788999999876 44333322
Q ss_pred CCCccEEEEeCCCCEEEEEECC---CcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEec
Q 001343 629 LPNLPRLRFSKEGNLLAVTTAD---NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1096)
Q Consensus 629 ~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~ 705 (1096)
.=+.+.|+|.+++++.++.| |.+.+|+......+...+.+... .-+.|+|||.++........
T Consensus 317 --~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~-------s~~~wspd~qF~~~~~ts~k----- 382 (561)
T COG5354 317 --KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT-------SYCDWSPDGQFYDTDTTSEK----- 382 (561)
T ss_pred --ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc-------eEeeccCCceEEEecCCCcc-----
Confidence 33678999999999998865 77999998777555545554432 23578888888733322110
Q ss_pred cCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecC
Q 001343 706 SSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN 785 (1096)
Q Consensus 706 ~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d 785 (1096)
--.|..|++|++.. . .-...+.+.|.|.|++..+.+..
T Consensus 383 --------------------------~~~Dn~i~l~~v~g----~------------~~fel~~~~W~p~~~~~ttsSs~ 420 (561)
T COG5354 383 --------------------------LRVDNSIKLWDVYG----A------------KVFELTNITWDPSGQYVTTSSSC 420 (561)
T ss_pred --------------------------cccCcceEEEEecC----c------------hhhhhhhccccCCcccceeeccC
Confidence 12368899999862 1 11256678888888866666655
No 235
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.51 E-value=2e-12 Score=135.12 Aligned_cols=275 Identities=11% Similarity=0.115 Sum_probs=183.6
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE-----cCCCCE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW-----SPDGNY 420 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-----spd~~~ 420 (1096)
.+....++-.|++++.- ....+.+|+...+..+.. ++....+.+. .-.|=+| .|++--
T Consensus 125 ~~~~~~~~~~gd~lcFn--vg~~lyv~~~~g~~~~~~-------------pi~k~~y~gt--~P~cHdfn~~~a~~~g~d 187 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFN--VGRELYVYSYRGAADLSK-------------PIDKREYKGT--SPTCHDFNSFTATPKGLD 187 (636)
T ss_pred ceeeccccCCCCEEEEe--cCCeEEEEEccCcchhcc-------------chhhhcccCC--CCceecccccccCCCCcc
Confidence 46667777778864442 456788999876444321 1122223322 2233333 456777
Q ss_pred EEEEECCCeEEEEEccCCCccccceeec--ccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCeE
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVY 498 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~--~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~ 498 (1096)
|.+|-.-|.|.+.|.... .+..+.... -.+..|+|+.|-|.+.. .++.+-.+|.++++|.. +....+
T Consensus 188 llIGf~tGqvq~idp~~~-~~sklfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~---------~~~~~t 256 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINF-EVSKLFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE---------IVCGAT 256 (636)
T ss_pred eEEeeccCceEEecchhh-HHHHhhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc---------ccccCC
Confidence 888988899999987662 222211111 23478999999998876 56667789999999841 111111
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeE
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1096)
...+..-.++..+.....-+ ..+...+..+......|...+|+|||++|++.+. |+.++|+|..+.+++.
T Consensus 257 ~p~~~~~k~~~~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eLlg 326 (636)
T KOG2394|consen 257 APSYQALKDGDQFAILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQELLG 326 (636)
T ss_pred CCcccccCCCCeeEEeeeec------cccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHHHH
Confidence 11221122223332221100 0111333344444558999999999999999997 9999999999988887
Q ss_pred EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCC------------------
Q 001343 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE------------------ 640 (1096)
Q Consensus 579 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------ 640 (1096)
.++..-+ ...|++|+|||++|++|++|--|.||.+..++.+..-.+|. ..|..++|.|-
T Consensus 327 ~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHk--SWVs~VaFDpytt~~ee~~~~~~~~~~~~ 403 (636)
T KOG2394|consen 327 VMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHK--SWVSVVAFDPYTTSTEEWNNFSGMDSTFS 403 (636)
T ss_pred HHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccc--cceeeEeeccccccccccccccccccccc
Confidence 7776666 78899999999999999999999999999988887666654 48999999830
Q ss_pred ------------------------------CCEEEEEECCCcEEEEEcCCC
Q 001343 641 ------------------------------GNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 641 ------------------------------~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
...+.+.+.|..+.+||+...
T Consensus 404 ~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 404 DVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred chhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence 125677888999999999765
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=5.8e-12 Score=143.59 Aligned_cols=238 Identities=15% Similarity=0.131 Sum_probs=157.0
Q ss_pred CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECC---CeEEEEEccCCCcccc
Q 001343 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQ 443 (1096)
Q Consensus 367 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d---g~i~vwd~~~~~~~~~ 443 (1096)
..|.+||...+.... +..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 468899986443221 45577789999999999999987643 479999998876432
Q ss_pred ceeecccccCEEEEEEecCCCcEEEEEEeCCC--cEEEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEE-CCCe-
Q 001343 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGK- 519 (1096)
Q Consensus 444 ~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~- 519 (1096)
+..+.+...+..|+|||+. ++++.+.++ .|++||..+..+..+..+.......+|+| ||+.|+.++ .+|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~~ 316 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAP--DGKSIYFTSDRGGRP 316 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCc
Confidence 3344555668899999994 334555555 59999944444556666665566778866 667777665 4455
Q ss_pred -EEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCC
Q 001343 520 -IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1096)
Q Consensus 520 -i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 598 (1096)
|.++++.+++.. .+..........+|+|||++++.... .++...|++||+.+++......+. ......|+|+|+
T Consensus 317 ~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~g~~~~Lt~~~---~~~~p~~spdG~ 391 (433)
T PRK04922 317 QIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLSTGSVRTLTPGS---LDESPSFAPNGS 391 (433)
T ss_pred eEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECCCCCeEECCCCC---CCCCceECCCCC
Confidence 555566554433 23333344557899999999987653 223457999999888765332221 233468999999
Q ss_pred EEEEEEc---CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC
Q 001343 599 HFLAVGE---DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1096)
Q Consensus 599 ~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1096)
+++..+. .+.|++++...+ ....+..+.. .+...+|+|
T Consensus 392 ~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~g--~~~~p~wsp 432 (433)
T PRK04922 392 MVLYATREGGRGVLAAVSTDGR-VRQRLVSADG--EVREPAWSP 432 (433)
T ss_pred EEEEEEecCCceEEEEEECCCC-ceEEcccCCC--CCCCCccCC
Confidence 9887764 346888888544 4444443322 566777776
No 237
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=5.1e-12 Score=143.10 Aligned_cols=236 Identities=13% Similarity=0.074 Sum_probs=151.9
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEe--CCCeEEEEecCCCCeeecccceeecccccCcccccccccc
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
+|-++.-.........+...+.+.+|||||+.++.+.. .+..|.+|++.+|+... +..
T Consensus 181 l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~ 240 (429)
T PRK03629 181 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VAS 240 (429)
T ss_pred EEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccC
Confidence 55555333333334457778999999999996443332 24579999998876432 111
Q ss_pred CCCCEEEEEEcCCCCEEEEE-ECCC--eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC-CCcEEEE
Q 001343 405 VPISVSRVAWSPDGNYVGVA-FTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVW 480 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~-~~dg--~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~-d~~i~iw 480 (1096)
..+.+...+|||||+.|+.. +.+| .|.+||+++++..+ +..+...+....|+|||+ .|+..+. ++...+|
T Consensus 241 ~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy 314 (429)
T PRK03629 241 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVY 314 (429)
T ss_pred CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCC--EEEEEeCCCCCceEE
Confidence 22334568999999998865 3344 58999998875432 444556788999999999 5665554 3444555
Q ss_pred --EcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC---CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 481 --ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 481 --d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
|..+.....+..+........|+| +|++|+..+.+ ..|.+||+.++.... +.. ........|+|||+.|+.
T Consensus 315 ~~d~~~g~~~~lt~~~~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 315 KVNINGGAPQRITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIY 390 (429)
T ss_pred EEECCCCCeEEeecCCCCccCEEECC--CCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEE
Confidence 544444445544444556677766 66777766543 357888987765433 222 223456789999999998
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 595 (1096)
.+.+. +...++++++ +|...+.+.++.. .+...+|+|
T Consensus 391 ~s~~~-~~~~l~~~~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 391 SSSQG-MGSVLNLVST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEcCC-CceEEEEEEC-CCCCeEECccCCC-CcCCcccCC
Confidence 87522 2345788887 4555566666554 566677776
No 238
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=5.5e-12 Score=143.11 Aligned_cols=225 Identities=14% Similarity=0.133 Sum_probs=149.9
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECC---CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~ 478 (1096)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 34567789999999999999987643 469999999886432 3334456678999999994 334667788777
Q ss_pred EEE--cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC-CCeEEEEEcCCC-CeeeEEeCCCCcEEEEEEcCCCCEEE
Q 001343 479 VWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 479 iwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~ 554 (1096)
+|. ..+.....+..+........|+| ||+.|+..+. +|...+|.++.. .....+...........|+|||++++
T Consensus 266 Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 266 IYTVNADGSGLRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred EEEEECCCCCcEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 776 45555666766666666778866 6677765554 567777766432 22222223333445688999999998
Q ss_pred EEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCC---eEEEEeCCCCeEEEEeecCCCCCC
Q 001343 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTDAEGGLPN 631 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1096)
..+.. .+...|++||+.+++........ ......|+|+|+.|+.++.++ .+++.+. ++.....+..+.+ .
T Consensus 344 ~~s~~-~g~~~I~v~d~~~g~~~~lt~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g--~ 416 (427)
T PRK02889 344 YISRV-GGAFKLYVQDLATGQVTALTDTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG--D 416 (427)
T ss_pred EEEcc-CCcEEEEEEECCCCCeEEccCCC---CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--C
Confidence 76642 22347999999888765433221 234578999999988877443 3666666 4555555544333 5
Q ss_pred ccEEEEeCC
Q 001343 632 LPRLRFSKE 640 (1096)
Q Consensus 632 v~~~~~s~~ 640 (1096)
+...+|+|-
T Consensus 417 ~~~p~wsp~ 425 (427)
T PRK02889 417 VREPSWGPF 425 (427)
T ss_pred CCCCccCCC
Confidence 677788773
No 239
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.49 E-value=1.1e-13 Score=141.96 Aligned_cols=270 Identities=13% Similarity=0.141 Sum_probs=211.9
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCc
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 485 (1096)
...-..+.++.+|++|+.|+..|.|-.+|+.+++....+. -...|.++.|..+.+ ++|. ...+.++|||..|.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~----v~Etv~Dv~~LHneq--~~AV-AQK~y~yvYD~~Gt 201 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN----VMETVRDVTFLHNEQ--FFAV-AQKKYVYVYDNNGT 201 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee----hhhhhhhhhhhcchH--HHHh-hhhceEEEecCCCc
Confidence 3456779999999999999999999999999987665332 356789999998877 5554 45789999999999
Q ss_pred eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCe
Q 001343 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1096)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~ 565 (1096)
.++.++.|. +|..+.|.|.. -+|++++..|.++.-|+.+++.+..+....+.+..++-+|-...+-+|.. .|+
T Consensus 202 ElHClk~~~-~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nGt 274 (545)
T KOG1272|consen 202 ELHCLKRHI-RVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NGT 274 (545)
T ss_pred EEeehhhcC-chhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cce
Confidence 999998664 68889998754 57888899999999999999999888888889999999998888888876 999
Q ss_pred EEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEE
Q 001343 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1096)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 645 (1096)
|.+|.....+++..+..|.+ ++.++++.++|.++++.|.|..++|||++....+.++... + ....+++|..| +||
T Consensus 275 VSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp-~--~a~~ls~Sqkg-lLA 349 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP-H--PASNLSLSQKG-LLA 349 (545)
T ss_pred EEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecC-C--Ccccccccccc-cee
Confidence 99999999999999999988 9999999999999999999999999999988777666552 2 56788888665 444
Q ss_pred EEECCCcEEEEEc-CCCc-cccccccCCCcccccCcceeEEeecCCCeEEecCCC
Q 001343 646 VTTADNGFKILAN-AIGL-RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (1096)
Q Consensus 646 ~~~~dg~i~iwd~-~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~ 698 (1096)
.+. ...+.||.- ..+. ........|. ..++|..+.|.|-...+-.+-..
T Consensus 350 ~~~-G~~v~iw~d~~~~s~~~~~pYm~H~---~~~~V~~l~FcP~EDvLGIGH~~ 400 (545)
T KOG1272|consen 350 LSY-GDHVQIWKDALKGSGHGETPYMNHR---CGGPVEDLRFCPYEDVLGIGHAG 400 (545)
T ss_pred eec-CCeeeeehhhhcCCCCCCcchhhhc---cCcccccceeccHHHeeeccccC
Confidence 443 347899952 2211 1111111222 23468888888887777444333
No 240
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=6.7e-12 Score=142.42 Aligned_cols=246 Identities=18% Similarity=0.155 Sum_probs=155.8
Q ss_pred CceeecCCCc---eeeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeC-C--CeEEEEecCCCCeeecccceeec
Q 001343 316 EEVTYSSSRH---QTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSS-N--GEITLWELAMRDRLVSKPFKIWD 389 (1096)
Q Consensus 316 ~~v~~~~~~~---~~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~-d--g~I~iwd~~~~~~~~~~~~~~~~ 389 (1096)
..++|..... .+|-.+.........+.+...+.+.+|||||+. ||..+. + ..|.+||+.+++...
T Consensus 164 ~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~-la~~s~~~~~~~I~~~dl~~g~~~~-------- 234 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTK-LAYVSFESKKPVVYVHDLATGRRRV-------- 234 (427)
T ss_pred cEEEEEEccCCccEEEEECCCCCCceEeccCCCCcccceEcCCCCE-EEEEEccCCCcEEEEEECCCCCEEE--------
Confidence 4466665432 277666533333444568889999999999995 554443 2 469999999887542
Q ss_pred ccccCccccccccccCCCCEEEEEEcCCCCEEEE-EECCCeEEEEEc--cCCCccccceeecccccCEEEEEEecCCCcE
Q 001343 390 MAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV-AFTKHLIQLYSY--AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLL 466 (1096)
Q Consensus 390 ~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s-~~~dg~i~vwd~--~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~ 466 (1096)
+....+.+.+.+|||||+.|+. .+.+|...||.+ .++. .+ .+..+.+......|+|||+
T Consensus 235 ------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~-- 296 (427)
T PRK02889 235 ------------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGR-- 296 (427)
T ss_pred ------------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCC--
Confidence 2223345678999999998874 566777666654 4443 23 3555666677889999999
Q ss_pred EEEEEe-CCCcEEEEE--cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCC---eEEEEEcCCCCeeeEEeCCCCc
Q 001343 467 CVVTCG-DDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHW 540 (1096)
Q Consensus 467 ~l~s~s-~d~~i~iwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~ 540 (1096)
.|+..+ .++...+|. ..+.....+..+........|+| +|++|+..+.++ .|.+||+.+++...... ...
T Consensus 297 ~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~ 372 (427)
T PRK02889 297 SIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTR 372 (427)
T ss_pred EEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECC--CCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCC
Confidence 555444 456667776 34433333332233344567766 678888776554 69999998776543322 223
Q ss_pred EEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC
Q 001343 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1096)
Q Consensus 541 i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 595 (1096)
.....|+|||+.|+..+.. .+...+++.+. ++...+.+..+.+ .+...+|+|
T Consensus 373 ~~~p~~spdg~~l~~~~~~-~g~~~l~~~~~-~g~~~~~l~~~~g-~~~~p~wsp 424 (427)
T PRK02889 373 DESPSFAPNGRYILYATQQ-GGRSVLAAVSS-DGRIKQRLSVQGG-DVREPSWGP 424 (427)
T ss_pred ccCceECCCCCEEEEEEec-CCCEEEEEEEC-CCCceEEeecCCC-CCCCCccCC
Confidence 4678999999999988753 23446777777 4555555554433 455566665
No 241
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.7e-11 Score=140.12 Aligned_cols=222 Identities=12% Similarity=0.040 Sum_probs=151.5
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEEC---CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCc--
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-- 476 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~-- 476 (1096)
+..|...+.+.+|||||+.|+..+. +..|.+||+.+++.. .+..+.+.+...+|+|||+. ++++.+.++.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 271 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE----LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTD 271 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----EeecCCCcccCcEECCCCCE-EEEEEecCCCce
Confidence 5567889999999999999988764 468999999887643 24556777889999999994 3456666665
Q ss_pred EEEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC-CC--eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEE
Q 001343 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1096)
Q Consensus 477 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 553 (1096)
|++||..+.....+..+........|+| ||+.|+..+. +| .|.+||+..+... .+......+....|+|||+.|
T Consensus 272 Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 272 IYTMDLRSGTTTRLTDSPAIDTSPSYSP--DGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred EEEEECCCCceEEccCCCCccCceeEcC--CCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEE
Confidence 7777854555566766666677788876 6677776653 34 5777787655443 333334456778999999999
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC------CeEEEEeCCCCeEEEEeecCC
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED------SQIKFWDMDNVNILTSTDAEG 627 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~ 627 (1096)
+..... .+...|.+||+.++.. +.+... . .+....|+|+|+.|+..+.+ ..++++++..+.. ..+...
T Consensus 349 a~~~~~-~~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~- 422 (435)
T PRK05137 349 AFTKQG-GGQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTP- 422 (435)
T ss_pred EEEEcC-CCceEEEEEECCCCce-EeccCC-C-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCC-
Confidence 887632 2245789999865543 333321 1 35568899999998776542 3688888876554 333322
Q ss_pred CCCCccEEEEeC
Q 001343 628 GLPNLPRLRFSK 639 (1096)
Q Consensus 628 ~~~~v~~~~~s~ 639 (1096)
. .+...+|+|
T Consensus 423 ~--~~~~p~Wsp 432 (435)
T PRK05137 423 G--DASDPAWSP 432 (435)
T ss_pred C--CccCcccCC
Confidence 1 456677776
No 242
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.47 E-value=7.9e-12 Score=123.52 Aligned_cols=172 Identities=16% Similarity=0.229 Sum_probs=124.7
Q ss_pred CcCCCeeeeeecCCCcEEEEecCCeEEEEEccc-ceE--EEeecCCC-----CCeeEEEEecCCCcEEEEeeCCCeEEEE
Q 001343 829 NLEEAVPCIALSKNDSYVMSATGGKISLFNMMT-FKV--MTTFMSPP-----PASTFLAFHPQDNNIIAIGTEDSTIHIY 900 (1096)
Q Consensus 829 ~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~-~~~--~~~~~~h~-----~~i~~l~~s~~d~~~l~s~~~dg~i~iw 900 (1096)
+|..-|.++.+..|++.+.+++|=+|-+|++.- .+. +--++.+. .-|++..|+|...+.++..+..|+|++-
T Consensus 162 aHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred cceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 489999999999999999999999999999842 122 22233332 4588899999777888999999999999
Q ss_pred eeccceeeeeeccccccccceeeecCCCC---CC-----CCCceEEEecCCcEEEEEecceEEEEEc-ccceeccccccC
Q 001343 901 NVRVDELCVWSIDTWEKRKSVTIHIPAGK---TP-----TGDTRVQFNADQVRMLVVHETQLAIYDA-SKMERIRQWTPQ 971 (1096)
Q Consensus 901 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~---~~-----~~v~~v~fs~dg~~l~~~~d~~i~iwd~-~~~~~~~~~~~~ 971 (1096)
|+....+|.-.... ...+... .. +.|..++||+.|+++++-.--+|++||+ ...+.+.+..-|
T Consensus 242 DmR~~aLCd~hsKl--------fEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 242 DMRQSALCDAHSKL--------FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred echhhhhhcchhhh--------hccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeeh
Confidence 99987766532111 1111111 11 5889999999999999966689999999 344443332211
Q ss_pred CC---------CCCCc---eEEEEeeCCcEEEEEecCCcEEEEecCCCc
Q 001343 972 DA---------LSAPI---SCAVYSCNSQLVFATFCDGNIGVFDADTLR 1008 (1096)
Q Consensus 972 ~~---------~~~~i---~~l~~s~dg~~la~~~~dg~i~vwd~~~~~ 1008 (1096)
.. ..+.| ..++|+.++.+++||+....++||++..|.
T Consensus 314 ~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 314 EYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred HhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 10 02223 357889999999999999999999987765
No 243
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=8e-12 Score=126.07 Aligned_cols=272 Identities=11% Similarity=0.132 Sum_probs=192.3
Q ss_pred CCceEEEEEcCCCCcEEEEE-eCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVG-SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg-~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
...|..++|--+++.=+..+ +.|..+..+.+.......+ +|++. .......+|..++.. ...|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DGTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CCEEE
Confidence 34677777776665323333 3566666666655544322 12222 123345566666654 34777
Q ss_pred EEECCCeEEEEEccCCCcccc-ceeecccccCEEEEEEecCCCcEEEEEEeCC--CcEEEEE-cCCceEEEeeC------
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQ-HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-LSGRKLFNFEG------ 492 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~-~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d--~~i~iwd-~~~~~~~~~~~------ 492 (1096)
+|-.+|.+.+|..+.+..-.. +..+. -...+..+.-++..++ ++++|+.. ..+.+|| ...+.+.+-+.
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeee-cCCceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 888899999999985432111 11232 2356777777777775 67779988 8999999 66655544322
Q ss_pred -CCCCe--EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe-eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 493 -HEAPV--YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 493 -~~~~v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
-.-|| +++.|.+......|++++.-+.+|+||.+.+.. +..+.....+++++...|+|++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 22344 466676654468899999999999999986554 4577778889999999999999999987 889999
Q ss_pred EeCCCCeeeEE-EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCC
Q 001343 569 WNESEGTIKRT-YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 569 wd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1096)
+|.++++.... +.+..+ .+.++..+|.+.+++++|-|..++|+|+++.+++....... .++++.+.++
T Consensus 274 FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~~ 342 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRDD 342 (412)
T ss_pred ecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecCC
Confidence 99999998887 777766 89999999999999999999999999999977776655443 4566666553
No 244
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.46 E-value=2.1e-10 Score=118.27 Aligned_cols=171 Identities=16% Similarity=0.164 Sum_probs=131.8
Q ss_pred CCcEEEEecCCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCC-eEEEEeeccceeeeeeccccccccc
Q 001343 842 NDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS-TIHIYNVRVDELCVWSIDTWEKRKS 920 (1096)
Q Consensus 842 dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg-~i~iw~~~~~~~~~w~~~~~~~~~~ 920 (1096)
+|.++|..+.|+..|.+...+-.++. +|.+.|.-..+.- +++-++.|..|| .+-|+|..+++
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e-------------- 393 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE-------------- 393 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce--------------
Confidence 78899999999999998766655543 5677799888888 788999999999 89999999887
Q ss_pred eeeecCCCCCCCCCceEEEecCCcEEEEE-ecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCC--
Q 001343 921 VTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG-- 997 (1096)
Q Consensus 921 ~~~~~~~~~~~~~v~~v~fs~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg-- 997 (1096)
++...+.-. .|.+++.++||+.++++ ....|.++|+++|.....-... .+-|+.+.|+|+++++|.+.-+|
T Consensus 394 --~kr~e~~lg-~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~---~~lItdf~~~~nsr~iAYafP~gy~ 467 (668)
T COG4946 394 --VKRIEKDLG-NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSE---YGLITDFDWHPNSRWIAYAFPEGYY 467 (668)
T ss_pred --EEEeeCCcc-ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccc---cceeEEEEEcCCceeEEEecCccee
Confidence 233333333 89999999999999995 4568999999999853322222 67899999999999999988776
Q ss_pred --cEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEe
Q 001343 998 --NIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGL 1049 (1096)
Q Consensus 998 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~ 1049 (1096)
.|+++|+++++......+.+ .-+ +-+|.| |+++|.--+
T Consensus 468 tq~Iklydm~~~Kiy~vTT~ta-----------~Df--sPaFD~-d~ryLYfLs 507 (668)
T COG4946 468 TQSIKLYDMDGGKIYDVTTPTA-----------YDF--SPAFDP-DGRYLYFLS 507 (668)
T ss_pred eeeEEEEecCCCeEEEecCCcc-----------ccc--CcccCC-CCcEEEEEe
Confidence 58999999999776544333 222 248888 888765543
No 245
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.2e-11 Score=140.96 Aligned_cols=235 Identities=14% Similarity=0.103 Sum_probs=150.3
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeC---CCeEEEEecCCCCeeecccceeecccccCccccccccc
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1096)
+|-+|...........|...+.+.+|+|||++ |+..+. +..|.+||+.+++... +.
T Consensus 186 l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~ 244 (433)
T PRK04922 186 LQVADSDGYNPQTILRSAEPILSPAWSPDGKK-LAYVSFERGRSAIYVQDLATGQREL--------------------VA 244 (433)
T ss_pred EEEECCCCCCceEeecCCCccccccCCCCCCE-EEEEecCCCCcEEEEEECCCCCEEE--------------------ec
Confidence 55544333334444457888999999999995 555543 3479999998876532 22
Q ss_pred cCCCCEEEEEEcCCCCEEEE-EECCC--eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe-CCCc--E
Q 001343 404 DVPISVSRVAWSPDGNYVGV-AFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKL--I 477 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s-~~~dg--~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~d~~--i 477 (1096)
.+.+...+.+|||||+.|+. .+.+| .|.+||+.+++.. .+..+.......+|+|||+ .|+.++ .++. |
T Consensus 245 ~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~i 318 (433)
T PRK04922 245 SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQI 318 (433)
T ss_pred cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCC--EEEEEECCCCCceE
Confidence 23344567899999998864 45555 6999999887643 2445666667899999999 566555 3444 6
Q ss_pred EEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCC---eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEE
Q 001343 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 478 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 554 (1096)
+++|..+.....+..+.......+|+| +|++|+..+.++ .|.+||+.+++.. .+. +........|+|||++++
T Consensus 319 y~~dl~~g~~~~lt~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~ 394 (433)
T PRK04922 319 YRVAASGGSAERLTFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVL 394 (433)
T ss_pred EEEECCCCCeEEeecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEE
Confidence 666633333333333333445677866 667777665443 6899998776654 222 222445679999999988
Q ss_pred EEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC
Q 001343 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 595 (1096)
..+.. .+...|++++... ...+.+..+.. .+...+|+|
T Consensus 395 ~~s~~-~g~~~L~~~~~~g-~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 395 YATRE-GGRGVLAAVSTDG-RVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred EEEec-CCceEEEEEECCC-CceEEcccCCC-CCCCCccCC
Confidence 77653 3456788998854 34444443333 444456655
No 246
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.45 E-value=2.6e-10 Score=112.28 Aligned_cols=238 Identities=10% Similarity=0.168 Sum_probs=163.5
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE-EE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG-VA 424 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~-s~ 424 (1096)
....++|+.|.. -+++| .|.-.+||+.+--+...+.. +.+-.-.+.-+-| -.++|| +|
T Consensus 7 ~~lsvs~NQD~S-cFava-~~~Gfriyn~~P~ke~~~r~-----------------~~~~G~~~veMLf--R~N~laLVG 65 (346)
T KOG2111|consen 7 KTLSVSFNQDHS-CFAVA-TDTGFRIYNCDPFKESASRQ-----------------FIDGGFKIVEMLF--RSNYLALVG 65 (346)
T ss_pred ceeEEEEccCCc-eEEEE-ecCceEEEecCchhhhhhhc-----------------cccCchhhhhHhh--hhceEEEec
Confidence 455699999988 57776 56678999987533221100 0111112222222 234554 34
Q ss_pred ECC------CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c-CCceEEEeeCCCCC
Q 001343 425 FTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFNFEGHEAP 496 (1096)
Q Consensus 425 ~~d------g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~-~~~~~~~~~~~~~~ 496 (1096)
|.+ ..|.|||=...+++. ++ .-..+|.++.+.++ .|+..- .+.|+||. . +-+.++.+.....|
T Consensus 66 Gg~~pky~pNkviIWDD~k~~~i~---el-~f~~~I~~V~l~r~----riVvvl-~~~I~VytF~~n~k~l~~~et~~NP 136 (346)
T KOG2111|consen 66 GGSRPKYPPNKVIIWDDLKERCII---EL-SFNSEIKAVKLRRD----RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP 136 (346)
T ss_pred CCCCCCCCCceEEEEecccCcEEE---EE-EeccceeeEEEcCC----eEEEEe-cCeEEEEEcCCChhheeeeecccCC
Confidence 333 479999944444443 23 35678999999877 455544 67999999 4 66667666543333
Q ss_pred eEEEEeeecCCCcEEEE-EECCCeEEEEEcCCCCe--eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC
Q 001343 497 VYSICPHHKENIQFIFS-TAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 497 v~~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
=--++..|..+..+|+. |-.-|.|+|-|+..... ......|...|.+++.+.+|..+++++. ...-|+|||..+
T Consensus 137 kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt---kGTLIRIFdt~~ 213 (346)
T KOG2111|consen 137 KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAST---KGTLIRIFDTED 213 (346)
T ss_pred CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEecc---CcEEEEEEEcCC
Confidence 22333334444444544 44569999999986655 5788899999999999999999999987 244689999999
Q ss_pred CeeeEEEcC-cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 574 GTIKRTYAG-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 574 ~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
|..+..++. .....+.+++|+|+..+|+++++.|++.||.++.
T Consensus 214 g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 214 GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 999999864 3445799999999999999999999999998875
No 247
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.44 E-value=1.2e-10 Score=121.70 Aligned_cols=376 Identities=12% Similarity=0.079 Sum_probs=237.3
Q ss_pred EEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEE
Q 001343 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1096)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 600 (1096)
.+|+..+......+....-++..+++||.|.+|++.. ...|.+|+-..+..+..+... .+.-+.|+|.+++|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----~~~V~~~~g~~~~~l~~~~~~---~V~~~~fSP~~kYL 86 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEH-----AAGVECWGGPSKAKLVRFRHP---DVKYLDFSPNEKYL 86 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhh-----ccceEEccccchhheeeeecC---CceecccCccccee
Confidence 3455444444444444566889999999999999876 567899998777655555432 57779999999999
Q ss_pred EEEEcC---------------CeEEEEeCCCCeEEEEeecCCCCCCcc-EEEEeCCCCEEEEEECCCcEEEEEcCCCccc
Q 001343 601 LAVGED---------------SQIKFWDMDNVNILTSTDAEGGLPNLP-RLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (1096)
Q Consensus 601 ~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 664 (1096)
.+-+.. ..+.+||..+|..+..+.........+ -+.|+-+..++|-.. ...+.|+++ ++.-.
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~ 164 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIE 164 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccc
Confidence 986533 359999999999999888766532244 678888887776653 347999997 33111
Q ss_pred cccccCCCcccc-cCcceeEEeecCCCeEE-ecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCcccee
Q 001343 665 LRAVENPPFEAL-RTPIESVALKVSASSAV-SSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (1096)
Q Consensus 665 ~~~~~~~~~~~~-~~~v~~~~~s~~g~~lv-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~ 742 (1096)
.+..... ...+....++|.|..-. +.+.+. ..+..+++++|.
T Consensus 165 -----~~p~~~lr~~gi~dFsisP~~n~~~la~~tPE-------------------------------k~~kpa~~~i~s 208 (561)
T COG5354 165 -----EHPFKNLRPVGILDFSISPEGNHDELAYWTPE-------------------------------KLNKPAMVRILS 208 (561)
T ss_pred -----cCchhhccccceeeEEecCCCCCceEEEEccc-------------------------------cCCCCcEEEEEE
Confidence 1111111 23466677887754321 222221 234457788888
Q ss_pred eeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCcccccc
Q 001343 743 LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822 (1096)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~ 822 (1096)
+.. ........+ ..-.-..+.|.+.|.+++.-..-.+ + . +........+.++++. ++.+.
T Consensus 209 Ip~---~s~l~tk~l-----fk~~~~qLkW~~~g~~ll~l~~t~~-k---s-------nKsyfgesnLyl~~~~-e~~i~ 268 (561)
T COG5354 209 IPK---NSVLVTKNL-----FKVSGVQLKWQVLGKYLLVLVMTHT-K---S-------NKSYFGESNLYLLRIT-ERSIP 268 (561)
T ss_pred ccC---CCeeeeeee-----EeecccEEEEecCCceEEEEEEEee-e---c-------ccceeccceEEEEeec-ccccc
Confidence 762 111222111 1122356778888887765432111 0 0 0000000122233322 22222
Q ss_pred ccccCCCcCCCeeeeeecCCCcEEEEec---CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCC---Ce
Q 001343 823 NDVAGVNLEEAVPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED---ST 896 (1096)
Q Consensus 823 ~~~~g~~~~~~v~~l~~s~dg~~la~~~---dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~d---g~ 896 (1096)
... + ..++|...+|.|.++.+++.+ .-.+.++|++.. +... .....-..+.|+| .++++++++-| |.
T Consensus 269 V~~-~--~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp-~~r~il~agF~nl~gn 341 (561)
T COG5354 269 VEK-D--LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSP-HERYILFAGFDNLQGN 341 (561)
T ss_pred eec-c--ccccceeeeecccCCceeEEecccccceeecccccc-eEEe--cCCcccccccccC-cccEEEEecCCccccc
Confidence 122 2 578999999999998877766 367999998654 4333 3455667889999 89999987765 67
Q ss_pred EEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEE-------ecceEEEEEcccceeccccc
Q 001343 897 IHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-------HETQLAIYDASKMERIRQWT 969 (1096)
Q Consensus 897 i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~-------~d~~i~iwd~~~~~~~~~~~ 969 (1096)
+.+|+......| +..+.+. ...-+.|||||.++.++ .|..+.|||+.....
T Consensus 342 i~i~~~~~rf~~--------------~~~~~~~---n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~----- 399 (561)
T COG5354 342 IEIFDPAGRFKV--------------AGAFNGL---NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV----- 399 (561)
T ss_pred eEEeccCCceEE--------------EEEeecC---CceEeeccCCceEEEecCCCcccccCcceEEEEecCchh-----
Confidence 999998876522 2344442 44667899999998882 277899999975542
Q ss_pred cCCCCCCCceEEEEeeCCcEEEEEecCC
Q 001343 970 PQDALSAPISCAVYSCNSQLVFATFCDG 997 (1096)
Q Consensus 970 ~~~~~~~~i~~l~~s~dg~~la~~~~dg 997 (1096)
...+.+.|.|.|++.-+.+.+.
T Consensus 400 ------fel~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 400 ------FELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ------hhhhhccccCCcccceeeccCC
Confidence 2456678888888888777665
No 248
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.44 E-value=2.5e-08 Score=121.43 Aligned_cols=248 Identities=8% Similarity=0.115 Sum_probs=160.3
Q ss_pred CCEEEEEEcCCCCEEEEEEC--CC--eEEEEEccCCCccccceeec-----ccccCEEEEEEecCCCcEEEEEEeCCCcE
Q 001343 407 ISVSRVAWSPDGNYVGVAFT--KH--LIQLYSYAGSNDLRQHSQID-----AHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~--dg--~i~vwd~~~~~~~~~~~~l~-----~h~~~v~~l~~s~d~~~~~l~s~s~d~~i 477 (1096)
..+...+|.+....+..+.. .. .|.+...........+..+. ...+.|.++.|.++.. .++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence 35777788776554443332 22 23443333222112222222 3457899999999998 68888889999
Q ss_pred EEE----EcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcC-------------CC----------Ce
Q 001343 478 KVW----ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-------------TM----------GS 530 (1096)
Q Consensus 478 ~iw----d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-------------~~----------~~ 530 (1096)
.+. +.....+.....-...|.+++|+| |+..|+..+.+|++.+.+-+ -+ +.
T Consensus 100 ~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSP--D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkK 177 (928)
T PF04762_consen 100 ILVREDPDPDEDEIEIVGSVDSGILAASWSP--DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKK 177 (928)
T ss_pred EEEEccCCCCCceeEEEEEEcCcEEEEEECC--CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcc
Confidence 999 544444444444577899999988 66789999989988775311 00 00
Q ss_pred eeEEeC------------------------CCCcEEEEEEcCCCCEEEEEeeccCC--CCeEEEEeCCCCeeeEEEcCcC
Q 001343 531 RVDYDA------------------------PGHWCTTMLYSADGSRLFSCGTSKDG--DSFLVEWNESEGTIKRTYAGFR 584 (1096)
Q Consensus 531 ~~~~~~------------------------~~~~i~~l~~s~~~~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~ 584 (1096)
...+.+ ....-..++|-.||.++++.+.+... ...+++|+-+ |.+..+-..-.
T Consensus 178 eTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~ 256 (928)
T PF04762_consen 178 ETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD 256 (928)
T ss_pred cCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC
Confidence 001100 11234678899999999988763332 4789999965 66555444322
Q ss_pred ccceEEEEEeCCCCEEEEEEc---CCeEEEEeCCCCeEEEEeecC--CCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 585 KKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNILTSTDAE--GGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 585 ~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
+ --..++|-|.|++|++... ...|.+|.. +|.....+... .....|..+.|++|+..||....|. |.+|...
T Consensus 257 g-Le~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 257 G-LEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS 333 (928)
T ss_pred C-ccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence 2 4456899999999988763 456888875 44444444332 2334789999999999999988765 9999987
Q ss_pred CCc
Q 001343 660 IGL 662 (1096)
Q Consensus 660 ~~~ 662 (1096)
+..
T Consensus 334 NYH 336 (928)
T PF04762_consen 334 NYH 336 (928)
T ss_pred CCE
Confidence 763
No 249
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=5.8e-11 Score=135.67 Aligned_cols=235 Identities=13% Similarity=0.041 Sum_probs=154.1
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeC---CCeEEEEecCCCCeeecccceeecccccCccccccccc
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1096)
+|-.+...........|...|.+.+|||||++ |+..+. +..|.+||+.+++... +.
T Consensus 184 l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~-lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~ 242 (435)
T PRK05137 184 LAIMDQDGANVRYLTDGSSLVLTPRFSPNRQE-ITYMSYANGRPRVYLLDLETGQREL--------------------VG 242 (435)
T ss_pred EEEECCCCCCcEEEecCCCCeEeeEECCCCCE-EEEEEecCCCCEEEEEECCCCcEEE--------------------ee
Confidence 66666444444444568889999999999996 554432 4689999998886532 34
Q ss_pred cCCCCEEEEEEcCCCCEEE-EEECCC--eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe-CCC--cE
Q 001343 404 DVPISVSRVAWSPDGNYVG-VAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDK--LI 477 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~-s~~~dg--~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~d~--~i 477 (1096)
.+.+.+.+.+|||||+.|+ +.+.++ .|.+||+.+++.. .+..+.+......|+|||+ .|+..+ .++ .|
T Consensus 243 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~--~i~f~s~~~g~~~I 316 (435)
T PRK05137 243 NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGS--QIVFESDRSGSPQL 316 (435)
T ss_pred cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCC--EEEEEECCCCCCeE
Confidence 4556778899999999876 445555 4777888876543 3555666778899999999 555554 333 67
Q ss_pred EEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC---CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEE
Q 001343 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 478 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 554 (1096)
++||..+.....+..+...+....|+| +|+.|+..+.+ ..|.+||+..... ..+. ....+..+.|+|||+.|+
T Consensus 317 y~~d~~g~~~~~lt~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~ 392 (435)
T PRK05137 317 YVMNADGSNPRRISFGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIM 392 (435)
T ss_pred EEEECCCCCeEEeecCCCcccCeEECC--CCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEE
Confidence 888855555555554455566777866 66777776543 3577788755443 2222 223567889999999988
Q ss_pred EEeeccCCC--CeEEEEeCCCCeeeEEEcCcCccceEEEEEeC
Q 001343 555 SCGTSKDGD--SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1096)
Q Consensus 555 ~~~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 595 (1096)
..+...... ..++++|+..+.. +.+.. .. .+...+|+|
T Consensus 393 ~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~-~~~~p~Wsp 432 (435)
T PRK05137 393 FFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PG-DASDPAWSP 432 (435)
T ss_pred EEEccCCCCCcceEEEEECCCCce-EEccC-CC-CccCcccCC
Confidence 766432221 4788888876554 34432 11 344455655
No 250
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=3.3e-11 Score=121.74 Aligned_cols=243 Identities=10% Similarity=0.140 Sum_probs=181.2
Q ss_pred CCCEEEEEEcCCCC--EEEEEECCCeEEEEEccCCCccccc---eeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 406 PISVSRVAWSPDGN--YVGVAFTKHLIQLYSYAGSNDLRQH---SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 406 ~~~V~~l~~spd~~--~l~s~~~dg~i~vwd~~~~~~~~~~---~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
...|..++|.-|++ .|..++.|..+..+.+......... .......+.|..++.. |+ .|++|-.+|.+.+|
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEEE
Confidence 45688888876654 4544546667777777665443321 1234456677777765 33 68999999999999
Q ss_pred E-cC----CceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC--CeEEEEEcCCCCeeeEEeCCC---------CcEEEE
Q 001343 481 E-LS----GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID--GKIKAWLYDTMGSRVDYDAPG---------HWCTTM 544 (1096)
Q Consensus 481 d-~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~---------~~i~~l 544 (1096)
. .. ...+..+..+ ..+..+.-++. ...++++|+.. ..+.+||++..+.++.-.... -+++++
T Consensus 131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~-~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi 208 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDT-DPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDI 208 (412)
T ss_pred eccCCccccccceeeecC-CceeeeccCCC-CCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccc
Confidence 9 42 2334444433 34555544433 33577779999 889999999886665433221 167889
Q ss_pred EEcCC--CCEEEEEeeccCCCCeEEEEeCCCC-eeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEE
Q 001343 545 LYSAD--GSRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (1096)
Q Consensus 545 ~~s~~--~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1096)
.|-+. ...+++++. -+.+++||.+.+ +++..|..... +++++...|+++++++|..-|.+..||.+.+....
T Consensus 209 ~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E~-~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g 283 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLEN-PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLG 283 (412)
T ss_pred eecCCCCCceEEEEec----ceeEEEecCcccCcceeEeccccC-cceeeeecCCCcEEEEecccchhheecccCceeec
Confidence 99887 788999887 899999999865 46667766555 89999999999999999999999999999999887
Q ss_pred E-eecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 622 S-TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 622 ~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
. +.+..+ .|.++..+|.++++++++-|..+||+|+.+.
T Consensus 284 ~~~kg~tG--sirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 284 CGLKGITG--SIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred cccCCccC--CcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 7 665555 8999999999999999999999999999885
No 251
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=1.1e-10 Score=123.31 Aligned_cols=288 Identities=15% Similarity=0.144 Sum_probs=192.8
Q ss_pred ccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC
Q 001343 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM 528 (1096)
Q Consensus 449 ~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 528 (1096)
.|...-+.|..+|||++ ++++|..--.|++||...-.+..-+.....+..+... +.|-..++.-..|.+|.+...-
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiL-sDD~SK~v~L~~DR~IefHak~-- 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKY-- 124 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEcccceeeeeecccccceeEEEe-ccchhhheEeecCceeeehhhc--
Confidence 57788899999999997 7888999999999994433332222223333333222 1132345555667777654211
Q ss_pred CeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCe
Q 001343 529 GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ 608 (1096)
Q Consensus 529 ~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 608 (1096)
........ +..-..++++.-.--|++++. ...|+-++++.|..+..|..... .++++.+++-..+|++|+.+|.
T Consensus 125 G~hy~~RI-P~~GRDm~y~~~scDly~~gs----g~evYRlNLEqGrfL~P~~~~~~-~lN~v~in~~hgLla~Gt~~g~ 198 (703)
T KOG2321|consen 125 GRHYRTRI-PKFGRDMKYHKPSCDLYLVGS----GSEVYRLNLEQGRFLNPFETDSG-ELNVVSINEEHGLLACGTEDGV 198 (703)
T ss_pred Ceeeeeec-CcCCccccccCCCccEEEeec----CcceEEEEccccccccccccccc-cceeeeecCccceEEecccCce
Confidence 11111111 112345566544444555554 66899999999999998887765 8899999999999999999999
Q ss_pred EEEEeCCCCeEEEEeecCCC---------CCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCc
Q 001343 609 IKFWDMDNVNILTSTDAEGG---------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTP 679 (1096)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 679 (1096)
|.+||.+....+..+....+ ...|+++.|+.+|-.+++|+.+|.+.|||+.+....+..-.+. ..+
T Consensus 199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~-----e~p 273 (703)
T KOG2321|consen 199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGY-----ELP 273 (703)
T ss_pred EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCC-----ccc
Confidence 99999998877766653322 2358999999999999999999999999998874443332222 344
Q ss_pred ceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCC
Q 001343 680 IESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPE 759 (1096)
Q Consensus 680 v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 759 (1096)
|..+.|.+.+ ++..+++.+. ..++||+-.+ +.....+.
T Consensus 274 i~~l~~~~~~-----------------------------------~q~~v~S~Dk-~~~kiWd~~~---Gk~~asiE--- 311 (703)
T KOG2321|consen 274 IKKLDWQDTD-----------------------------------QQNKVVSMDK-RILKIWDECT---GKPMASIE--- 311 (703)
T ss_pred eeeecccccC-----------------------------------CCceEEecch-HHhhhccccc---CCceeecc---
Confidence 5556664431 1122333332 7789999774 33333322
Q ss_pred CCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCC
Q 001343 760 STDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRN 796 (1096)
Q Consensus 760 ~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~ 796 (1096)
....+..+++-|++..++++..++.+..|-++.-
T Consensus 312 ---pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 312 ---PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred ---ccCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 5567999999999988888888888877776543
No 252
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.37 E-value=7.7e-11 Score=116.70 Aligned_cols=262 Identities=12% Similarity=0.200 Sum_probs=174.8
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccc--cCCCCEEEEEEcCCCC-
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK--DVPISVSRVAWSPDGN- 419 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~spd~~- 419 (1096)
..+-|.+|.|..+|. +||+|..+|.|.++.-..... ..++++..-. +....-.-++ .-...|..+.|.++++
T Consensus 24 eadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~---~ey~~~t~fq-shepEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 24 EADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK---GEYNFQTEFQ-SHEPEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred hhcceeeEEeecccc-eEeecCCCCeEEEeecccccc---cceeeeeeee-ccCcccchhhhhhhhhhhhhceecCCCCc
Confidence 345789999999999 699999999999998543221 0111110000 0000000011 1135689999998754
Q ss_pred -EEEEEECCCeEEEEEccCCCccc------------------c--------------cee-ecccccCEEEEEEecCCCc
Q 001343 420 -YVGVAFTKHLIQLYSYAGSNDLR------------------Q--------------HSQ-IDAHVGAVNDLAFAYPNKL 465 (1096)
Q Consensus 420 -~l~s~~~dg~i~vwd~~~~~~~~------------------~--------------~~~-l~~h~~~v~~l~~s~d~~~ 465 (1096)
.++..+.|.+|++|.+....... . .+. -.+|.--|+++.++.|+.
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 56667789999999876422111 0 001 246888899999999998
Q ss_pred EEEEEEeCCCcEEEEE--cCCceE--EEeeCC-----CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe------
Q 001343 466 LCVVTCGDDKLIKVWE--LSGRKL--FNFEGH-----EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS------ 530 (1096)
Q Consensus 466 ~~l~s~s~d~~i~iwd--~~~~~~--~~~~~~-----~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------ 530 (1096)
.++++ .|=.|.+|+ ...+.. ..++.+ ..-|++..|+|.. ...++-.+..|+|++.|++....
T Consensus 178 -t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~-cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 178 -TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH-CNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred -eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH-ccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 66665 488999999 444432 223322 3457888899875 46788888899999999983221
Q ss_pred eeEEeCC----------CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC-CCCeeeEEEcCcCc-----------cc-
Q 001343 531 RVDYDAP----------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE-SEGTIKRTYAGFRK-----------KS- 587 (1096)
Q Consensus 531 ~~~~~~~----------~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~-~~~~~~~~~~~~~~-----------~~- 587 (1096)
....... -..|..+.|+++|+++++-. -.+|++||+ ...+++.+++.|.. ..
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch
Confidence 1111111 12578899999999999864 578999999 45667777765532 11
Q ss_pred --eEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe
Q 001343 588 --NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 588 --i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1096)
-..++|+.++.++++|+....+++|+...|.
T Consensus 330 fdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 330 FDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 1237899999999999999999999976654
No 253
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.36 E-value=1.7e-09 Score=119.17 Aligned_cols=311 Identities=14% Similarity=0.188 Sum_probs=181.7
Q ss_pred EEEEECC----CeEEEEEcCCCCeeeEE---eCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC--Cee--eEE
Q 001343 511 IFSTAID----GKIKAWLYDTMGSRVDY---DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--GTI--KRT 579 (1096)
Q Consensus 511 l~s~~~d----g~i~iwd~~~~~~~~~~---~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~--~~~--~~~ 579 (1096)
+++|+.. +.|.+|+++........ .........++++|++++|++........+.|..|.+.. +++ +..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4555555 78999988443333221 123446778999999999999875322467888887765 333 333
Q ss_pred EcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCC-CeEEEE---eec--------CCCCCCccEEEEeCCCCEEEE
Q 001343 580 YAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDN-VNILTS---TDA--------EGGLPNLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~---~~~--------~~~~~~v~~~~~s~~~~~l~~ 646 (1096)
... .+.....++++|++++++++. .+|.|.++++.. +.+... +.. ........++.++|+++++++
T Consensus 82 ~~~-~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 82 VPS-GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEE-SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred ecc-CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 332 222456699999999999987 589999999987 443332 111 112235679999999998888
Q ss_pred EEC-CCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCC
Q 001343 647 TTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM 725 (1096)
Q Consensus 647 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d 725 (1096)
... ...|.+|++......+...... ........+.++|+|+|+++..
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv------------------------------- 208 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYV------------------------------- 208 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEE-------------------------------
T ss_pred EecCCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEE-------------------------------
Confidence 753 3479999987653222111100 0111234677999999888722
Q ss_pred CCCccccCCCCCccceeeeeeec-CCceEEEE-cCCCCCCcccEEEEEEecCCceEEEeec-CCeEEEeeccCCccCCCC
Q 001343 726 DKPRTVDDVTDKPKPWQLAEIVD-SGQCRLVT-MPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSG 802 (1096)
Q Consensus 726 ~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~g 802 (1096)
....+++|.++++..... -.....+. ++...........++++|||++|.++.. .+.|.+|+++... |
T Consensus 209 -----~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~----g 279 (345)
T PF10282_consen 209 -----VNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT----G 279 (345)
T ss_dssp -----EETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT----T
T ss_pred -----ecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC----C
Confidence 223346677777661100 00111111 1110112236889999999998887775 6789999984311 1
Q ss_pred ceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec--CCeEEEEEc--ccceEEEeec-CCCCCeeE
Q 001343 803 KATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNM--MTFKVMTTFM-SPPPASTF 877 (1096)
Q Consensus 803 ~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~--dg~v~iwd~--~~~~~~~~~~-~h~~~i~~ 877 (1096)
+.. .+. .++. .....+.++++|+|++|+++. ++.|.+|++ .+|.+...-. .......|
T Consensus 280 ~l~--------------~~~-~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~c 342 (345)
T PF10282_consen 280 TLT--------------LVQ-TVPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVC 342 (345)
T ss_dssp TEE--------------EEE-EEEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEE
T ss_pred ceE--------------EEE-EEeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEE
Confidence 111 001 1110 134468899999999999988 478999976 5666544321 23345566
Q ss_pred EEE
Q 001343 878 LAF 880 (1096)
Q Consensus 878 l~~ 880 (1096)
|.|
T Consensus 343 i~f 345 (345)
T PF10282_consen 343 IVF 345 (345)
T ss_dssp EEE
T ss_pred EeC
Confidence 665
No 254
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=8.1e-09 Score=104.63 Aligned_cols=301 Identities=11% Similarity=0.102 Sum_probs=185.1
Q ss_pred CCeEEEEEcCCCCeee---EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC--CCCeeeEEE--cCcCccceE
Q 001343 517 DGKIKAWLYDTMGSRV---DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE--SEGTIKRTY--AGFRKKSNG 589 (1096)
Q Consensus 517 dg~i~iwd~~~~~~~~---~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~--~~~~~~~~~--~~~~~~~i~ 589 (1096)
++-|.+|++++..... ........++-++|+|+++.|.++....+ ++.|..|.+ .+|++...- ..... +.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~-~ggvaay~iD~~~G~Lt~ln~~~~~g~-~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE-EGGVAAYRIDPDDGRLTFLNRQTLPGS-PPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCC-cCcEEEEEEcCCCCeEEEeeccccCCC-CCe
Confidence 5679999998544433 23344557889999999999999876422 455555544 446543322 22222 336
Q ss_pred EEEEeCCCCEEEEEE-cCCeEEEEeCCC-CeEEEEeecCCC----------CCCccEEEEeCCCCEEEEEEC-CCcEEEE
Q 001343 590 VVQFDTTQNHFLAVG-EDSQIKFWDMDN-VNILTSTDAEGG----------LPNLPRLRFSKEGNLLAVTTA-DNGFKIL 656 (1096)
Q Consensus 590 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~-dg~i~iw 656 (1096)
.+++++++++++++. ..|.|.++-++. |.+........+ ...+....+.|++++|++..- .-.|.+|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 699999999999987 568899999865 443332221111 123788999999999988764 2369999
Q ss_pred EcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCC
Q 001343 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD 736 (1096)
Q Consensus 657 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg 736 (1096)
++..+. ....-...- ......+.+.|+|++++... ...-++
T Consensus 173 ~~~dg~-L~~~~~~~v--~~G~GPRHi~FHpn~k~aY~------------------------------------v~EL~s 213 (346)
T COG2706 173 DLDDGK-LTPADPAEV--KPGAGPRHIVFHPNGKYAYL------------------------------------VNELNS 213 (346)
T ss_pred EcccCc-ccccccccc--CCCCCcceEEEcCCCcEEEE------------------------------------EeccCC
Confidence 998772 211111111 12335678999999988622 223347
Q ss_pred CccceeeeeeecCCceEE----EEcCCCCCCcccEEEEEEecCCceEEEeec-CCeEEEeeccCCccCCCCceeeecCcc
Q 001343 737 KPKPWQLAEIVDSGQCRL----VTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQ 811 (1096)
Q Consensus 737 ~i~iw~~~~~~~~~~~~~----~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~g~~~~~~~i~ 811 (1096)
+|.+|..+.. .+.+.. ..+|..-........+..++||++|.++.. ...|.+|.++. ++..+.
T Consensus 214 tV~v~~y~~~--~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~-----~~g~L~----- 281 (346)
T COG2706 214 TVDVLEYNPA--VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP-----DGGKLE----- 281 (346)
T ss_pred EEEEEEEcCC--CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC-----CCCEEE-----
Confidence 8888888743 122221 123332223456788999999998877766 45777777643 111110
Q ss_pred ccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-C-CeEEEEEc--ccceEEEeec-CCCCCeeEEEEe
Q 001343 812 HWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-G-GKISLFNM--MTFKVMTTFM-SPPPASTFLAFH 881 (1096)
Q Consensus 812 ~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-d-g~v~iwd~--~~~~~~~~~~-~h~~~i~~l~~s 881 (1096)
.+..... +...-+.+.|+++|++|+++. + +.|.+|.+ .+|++-.... .......||.|.
T Consensus 282 --------~~~~~~t---eg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 282 --------LVGITPT---EGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred --------EEEEecc---CCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 0000111 334467789999999999998 3 67888876 4565543332 334455677664
No 255
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.31 E-value=2e-10 Score=113.70 Aligned_cols=163 Identities=18% Similarity=0.340 Sum_probs=114.6
Q ss_pred EEEEEEcCCCCEEEEEEC----------CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEE
Q 001343 409 VSRVAWSPDGNYVGVAFT----------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 409 V~~l~~spd~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~ 478 (1096)
=..+.|+|+|++|++-.. -+...+|-++..........+ ...++|.+++|+|+|+.+.++.|..++.|.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 346899999998876433 134556666433222111122 234579999999999964455566788999
Q ss_pred EEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC---CCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 479 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
+||.+++.+..+. ...++.+.|+| +|++|++++. .|.|.+||.++.+.+.... ...++.++|+|||+++++
T Consensus 87 lyd~~~~~i~~~~--~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 87 LYDVKGKKIFSFG--TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLAT 160 (194)
T ss_pred EEcCcccEeEeec--CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEE
Confidence 9997788887775 56788999977 6689998874 4679999999666655443 335789999999999998
Q ss_pred Eeec--cCCCCeEEEEeCCCCeeeEE
Q 001343 556 CGTS--KDGDSFLVEWNESEGTIKRT 579 (1096)
Q Consensus 556 ~~~~--~~~~~~i~iwd~~~~~~~~~ 579 (1096)
+... ...++.++||+.. |+.+..
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEe
Confidence 8753 1246788999875 554443
No 256
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=2e-09 Score=113.50 Aligned_cols=312 Identities=12% Similarity=0.096 Sum_probs=190.3
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC
Q 001343 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (1096)
Q Consensus 347 V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~ 426 (1096)
=+-+.|||-|. ||+|- .-.-|.+|--.+-..+.. + .| -.|.-+.|||+.+||+|-+.
T Consensus 213 etyv~wSP~GT-YL~t~-Hk~GI~lWGG~~f~r~~R-------------------F-~H-p~Vq~idfSP~EkYLVT~s~ 269 (698)
T KOG2314|consen 213 ETYVRWSPKGT-YLVTF-HKQGIALWGGESFDRIQR-------------------F-YH-PGVQFIDFSPNEKYLVTYSP 269 (698)
T ss_pred eeeEEecCCce-EEEEE-eccceeeecCccHHHHHh-------------------c-cC-CCceeeecCCccceEEEecC
Confidence 47899999999 58875 456788998655443321 1 13 35889999999999998652
Q ss_pred -----------CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCC
Q 001343 427 -----------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1096)
Q Consensus 427 -----------dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~ 494 (1096)
...++|||+.+|...+.+..+.+....-.-..||.|++ ++|--.. .+|.|++ .+-.++..-.-.-
T Consensus 270 ~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK--y~Arm~~-~sisIyEtpsf~lld~Kslki 346 (698)
T KOG2314|consen 270 EPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK--YFARMTG-NSISIYETPSFMLLDKKSLKI 346 (698)
T ss_pred CccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCc--eeEEecc-ceEEEEecCceeeecccccCC
Confidence 25799999999988776554433333334568999999 6766554 6789998 4433322211223
Q ss_pred CCeEEEEeeecCCCcEEEEEEC-----CCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeec--cCC----C
Q 001343 495 APVYSICPHHKENIQFIFSTAI-----DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS--KDG----D 563 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~--~~~----~ 563 (1096)
..|....|+|. ++.|+-=.. -.++.+-.+.+.+.+.....++-.=..+.|-.+|.+|+.-..- +.+ -
T Consensus 347 ~gIr~FswsP~--~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f 424 (698)
T KOG2314|consen 347 SGIRDFSWSPT--SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQF 424 (698)
T ss_pred ccccCcccCCC--cceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceE
Confidence 44666777774 345543221 1234444555555544444443333456777888888764320 000 1
Q ss_pred CeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE---cCCeEEEEeCCC-C---eEEEEeecCCCCCCccEEE
Q 001343 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG---EDSQIKFWDMDN-V---NILTSTDAEGGLPNLPRLR 636 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~~~ 636 (1096)
..+.|+.++........-.... .+-..+|.|.|+.+++-+ ...++.+|.+.+ . +++..+.. ...+.+.
T Consensus 425 ~n~eIfrireKdIpve~velke-~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~vf 499 (698)
T KOG2314|consen 425 SNLEIFRIREKDIPVEVVELKE-SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTVF 499 (698)
T ss_pred eeEEEEEeeccCCCceeeecch-heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceEE
Confidence 2344555443332211111222 667789999999887754 345788998873 2 23333332 2578999
Q ss_pred EeCCCCEEEEEE---CCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCC
Q 001343 637 FSKEGNLLAVTT---ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (1096)
Q Consensus 637 ~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s 697 (1096)
|+|.|++++.+. ..|.+.++|............. ....+.+.|.|.|++++++.+
T Consensus 500 wsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~e------h~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 500 WSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPE------HFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred EcCCCcEEEEEEecccccceEEEecchhhhhhccCcc------ccccccceECCCCCEEEEeee
Confidence 999999988765 4688999998642111111111 123456889999999977755
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=9.4e-10 Score=125.17 Aligned_cols=223 Identities=13% Similarity=0.092 Sum_probs=140.9
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECC---CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCc--
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-- 476 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~-- 476 (1096)
+..+...+.+..|||||++|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 44466788999999999999876543 368899998876422 2222333457899999995 3345566665
Q ss_pred EEEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEE-CCCe--EEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEE
Q 001343 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1096)
Q Consensus 477 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 553 (1096)
|++||..+..+..+..+.......+|+| ||+.|+..+ .+|. |.++|+.+++... +..........+|+|||+++
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEE
Confidence 7777844445556665655667778876 566665554 3444 5555665554332 22233334567899999999
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC-C--eEEEEeCCCCeEEEEeecCCCCC
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-S--QIKFWDMDNVNILTSTDAEGGLP 630 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~ 630 (1096)
+..+.. .+...|.++|+.+++........ ......|+|+|+.|+..+.+ + .+++++. ++.....+.....
T Consensus 365 ~~~~~~-~g~~~I~~~dl~~g~~~~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g-- 437 (448)
T PRK04792 365 IMVNRT-NGKFNIARQDLETGAMQVLTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQG-- 437 (448)
T ss_pred EEEEec-CCceEEEEEECCCCCeEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCC--
Confidence 887642 22346778898887654322221 11234799999988776533 3 4777787 4555555554332
Q ss_pred CccEEEEeC
Q 001343 631 NLPRLRFSK 639 (1096)
Q Consensus 631 ~v~~~~~s~ 639 (1096)
.+...+|+|
T Consensus 438 ~~~~p~Wsp 446 (448)
T PRK04792 438 EVKSPAWSP 446 (448)
T ss_pred CcCCCccCC
Confidence 567778876
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=1.4e-09 Score=124.80 Aligned_cols=224 Identities=14% Similarity=0.123 Sum_probs=142.6
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECC---CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC--c
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--L 476 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~--~ 476 (1096)
+..+...+...+|||||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 34467789999999999999877644 369999998875432 3333445567899999994 333555555 5
Q ss_pred EEEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC-CC--eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEE
Q 001343 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1096)
Q Consensus 477 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 553 (1096)
|++||..+.....+..+........|+| ||+.|+..+. +| .|.++++.+++... +...........|+|+|+.+
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 8888944444555665665566677866 5666655543 44 46666776655432 22223334567899999999
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC---CeEEEEeCCCCeEEEEeecCCCCC
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLP 630 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 630 (1096)
+..... ++...|.+||+.+++........ ......|+|+|+.++..+.+ ..|++++...+ ....+.....
T Consensus 346 ~~~~~~-~~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~g-- 418 (430)
T PRK00178 346 VMVHRQ-DGNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQG-- 418 (430)
T ss_pred EEEEcc-CCceEEEEEECCCCCEEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCCC--
Confidence 877642 22446899999887654332221 11235899999998877643 35777777543 3333433322
Q ss_pred CccEEEEeCC
Q 001343 631 NLPRLRFSKE 640 (1096)
Q Consensus 631 ~v~~~~~s~~ 640 (1096)
.+...+|+|-
T Consensus 419 ~~~~p~ws~~ 428 (430)
T PRK00178 419 EVREPSWSPY 428 (430)
T ss_pred CcCCCccCCC
Confidence 5666777763
No 259
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=6.8e-10 Score=127.35 Aligned_cols=235 Identities=12% Similarity=0.054 Sum_probs=144.2
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCC--CeEEEEecCCCCeeecccceeecccccCcccccccccc
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~d--g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
+|-++.-.......+.+...+...+|||||++++.+...+ ..|.+||+.+++... +..
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~ 240 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITN 240 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccC
Confidence 5555543344444556888999999999999644444333 369999998886542 222
Q ss_pred CCCCEEEEEEcCCCCEEEE-EECCC--eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe-CCC--cEE
Q 001343 405 VPISVSRVAWSPDGNYVGV-AFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDK--LIK 478 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s-~~~dg--~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~d~--~i~ 478 (1096)
..+.+...+|||||+.|+. ...+| .|.+||+.+++.. .+..+........|+|||+ .|+..+ .++ .|+
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~--~i~f~s~~~g~~~iy 314 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGR--TLYFTSDRGGKPQIY 314 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCC--EEEEEECCCCCceEE
Confidence 2334557899999998874 44444 6888899887543 2445666677889999999 444444 333 577
Q ss_pred EEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC-C--eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEE
Q 001343 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID-G--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 479 iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 554 (1096)
++| .+++. ..+...........|+| +|+.|+..+.+ + .|.+||+.+++...... ........|+|||+.++
T Consensus 315 ~~d~~~g~~-~~lt~~~~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~ 389 (430)
T PRK00178 315 KVNVNGGRA-ERVTFVGNYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLI 389 (430)
T ss_pred EEECCCCCE-EEeecCCCCccceEECC--CCCEEEEEEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEE
Confidence 777 45553 33322222233456765 66777766543 3 57788888765433222 12223568999999998
Q ss_pred EEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC
Q 001343 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 595 (1096)
..+. ..+...|++++... ...+.+..+.+ .+...+|+|
T Consensus 390 ~~~~-~~g~~~l~~~~~~g-~~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 390 YATR-QQGRGVLMLVSING-RVRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEEe-cCCceEEEEEECCC-CceEECcCCCC-CcCCCccCC
Confidence 8764 22345688888754 33344443322 344455655
No 260
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.29 E-value=1e-09 Score=126.04 Aligned_cols=210 Identities=15% Similarity=0.098 Sum_probs=138.6
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECC---CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC--c
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--L 476 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~--~ 476 (1096)
+..+...+...+|||||++|+.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44566678999999999999987654 479999998875432 3445667778999999984 334455444 5
Q ss_pred EEEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC-CC--eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEE
Q 001343 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1096)
Q Consensus 477 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 553 (1096)
|++||..+.....+..+........|++ +++.|+..+. ++ .|.++|+.+++. ..+..+...+....|+|+|+++
T Consensus 260 i~~~d~~~~~~~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 260 IYVMDLDGKQLTRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred EEEEECCCCCEEECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEE
Confidence 8888844444555555555555667766 6677766554 33 577777765543 3344455567788999999999
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCC---eEEEEeCCCCeEEEEee
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTD 624 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~ 624 (1096)
+.+.... +...|.+||+.++.... +.... ......|+|+++.|+..+.++ .+++.+.. +.....+.
T Consensus 337 ~~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 337 AFVHREG-GGFNIAVMDLDGGGERV-LTDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEccC-CceEEEEEeCCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 9877521 23489999998765433 32221 223457999999988877543 45565543 44444443
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1.1e-09 Score=123.50 Aligned_cols=240 Identities=13% Similarity=0.051 Sum_probs=149.5
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCc--EEEEEeCCC--eEEEEecCCCCeeecccceeecccccCcccccccc
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQT--LLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~--llasg~~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1096)
+|-++.-.............+..-+|||||+. ++++...+| .|.+.++.+|+... +
T Consensus 167 l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------l 226 (428)
T PRK01029 167 LWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------I 226 (428)
T ss_pred EEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------e
Confidence 66666444444443445566788899999985 333544444 67778888776432 2
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEEC-CC----eEEEEEccCCC--ccccceeecccccCEEEEEEecCCCcEEEEEEe-CC
Q 001343 403 KDVPISVSRVAWSPDGNYVGVAFT-KH----LIQLYSYAGSN--DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DD 474 (1096)
Q Consensus 403 ~~h~~~V~~l~~spd~~~l~s~~~-dg----~i~vwd~~~~~--~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~d 474 (1096)
....+.....+|||||+.||..+. +| .+.+|++.++. ..+. ...++.+.....+|+|||+ .|+..+ .+
T Consensus 227 t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~--~Laf~s~~~ 302 (428)
T PRK01029 227 LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGT--RLVFVSNKD 302 (428)
T ss_pred ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCC--EEEEEECCC
Confidence 223444556899999999987653 22 34447776532 1221 1222334456789999999 555444 46
Q ss_pred CcEEEEE--c--CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC---CeEEEEEcCCCCeeeEEeCCCCcEEEEEEc
Q 001343 475 KLIKVWE--L--SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYS 547 (1096)
Q Consensus 475 ~~i~iwd--~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 547 (1096)
|...+|. . .+.....+..+...+....|+| ||+.|+..+.+ ..|.+||+.+++..... .....+....|+
T Consensus 303 g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wS 379 (428)
T PRK01029 303 GRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWA 379 (428)
T ss_pred CCceEEEEECcccccceEEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEEC
Confidence 6555654 3 2344455555555667788876 66777766543 46899999877654433 223456789999
Q ss_pred CCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC
Q 001343 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT 596 (1096)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 596 (1096)
|||+.|+.... ..+...|+++|+.+++......+. . .+...+|+|.
T Consensus 380 pDG~~L~f~~~-~~g~~~L~~vdl~~g~~~~Lt~~~-g-~~~~p~Ws~~ 425 (428)
T PRK01029 380 IDSLHLVYSAG-NSNESELYLISLITKKTRKIVIGS-G-EKRFPSWGAF 425 (428)
T ss_pred CCCCEEEEEEC-CCCCceEEEEECCCCCEEEeecCC-C-cccCceecCC
Confidence 99999886553 234678999999888765554432 2 3445677764
No 262
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.27 E-value=7.9e-10 Score=126.91 Aligned_cols=222 Identities=18% Similarity=0.143 Sum_probs=143.3
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCC---CeEEEEecCCCCeeecccceeecccccCccccccccc
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN---GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1096)
+|-.+.........+.+...+...+|||||++ ||.++.+ ..|.+||+.+++... +.
T Consensus 172 l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~-la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~ 230 (417)
T TIGR02800 172 LQVADYDGANPQTITRSREPILSPAWSPDGQK-LAYVSFESGKPEIYVQDLATGQREK--------------------VA 230 (417)
T ss_pred EEEEcCCCCCCEEeecCCCceecccCCCCCCE-EEEEEcCCCCcEEEEEECCCCCEEE--------------------ee
Confidence 55555433344444557778999999999995 5554433 489999998876532 22
Q ss_pred cCCCCEEEEEEcCCCCEEEEE-ECCC--eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC-CC--cE
Q 001343 404 DVPISVSRVAWSPDGNYVGVA-FTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DK--LI 477 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~-~~dg--~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~-d~--~i 477 (1096)
.+.+.+.+++|+|||+.|+.. +.++ .|.+||+.+++... +..+........|+|||+ .|+..+. ++ .|
T Consensus 231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~s~dg~--~l~~~s~~~g~~~i 304 (417)
T TIGR02800 231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR----LTNGPGIDTEPSWSPDGK--SIAFTSDRGGSPQI 304 (417)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE----CCCCCCCCCCEEECCCCC--EEEEEECCCCCceE
Confidence 344567779999999988754 4343 58889988765332 444555566789999999 5555443 33 57
Q ss_pred EEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCC---eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEE
Q 001343 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 478 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 554 (1096)
+++|..+.....+..+...+....|+| ++.+++.++.++ .|.+||+.++.... +.. ........|+|+|+.|+
T Consensus 305 y~~d~~~~~~~~l~~~~~~~~~~~~sp--dg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~p~~spdg~~l~ 380 (417)
T TIGR02800 305 YMMDADGGEVRRLTFRGGYNASPSWSP--DGDLIAFVHREGGGFNIAVMDLDGGGERV-LTD-TGLDESPSFAPNGRMIL 380 (417)
T ss_pred EEEECCCCCEEEeecCCCCccCeEECC--CCCEEEEEEccCCceEEEEEeCCCCCeEE-ccC-CCCCCCceECCCCCEEE
Confidence 777844444445554555667778866 667888887765 78888887744332 222 22344568999999998
Q ss_pred EEeeccCCCCeEEEEeCCCCeeeEEEc
Q 001343 555 SCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1096)
..... ++...+++.+.. ++....+.
T Consensus 381 ~~~~~-~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 381 YATTR-GGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEeC-CCcEEEEEEECC-CceeeECC
Confidence 87752 223456666643 44444443
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=8.5e-10 Score=125.55 Aligned_cols=236 Identities=15% Similarity=0.092 Sum_probs=139.5
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCC--eEEEEecCCCCeeecccceeecccccCcccccccccc
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
+|-++.-.......+.+...+.+.+|||||++++.+...++ .|.+||+.+++... +..
T Consensus 200 l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~ 259 (448)
T PRK04792 200 LMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTS 259 (448)
T ss_pred EEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecC
Confidence 44443322233334457778999999999996444443343 68889998876532 111
Q ss_pred CCCCEEEEEEcCCCCEEEE-EECCCe--EEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC--cEEE
Q 001343 405 VPISVSRVAWSPDGNYVGV-AFTKHL--IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKV 479 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s-~~~dg~--i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~--~i~i 479 (1096)
..+.....+|||||+.|+. .+.+|. |.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|++
T Consensus 260 ~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~ 334 (448)
T PRK04792 260 FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYR 334 (448)
T ss_pred CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEE
Confidence 1223346899999998875 455564 778888876533 24455566788999999994 233333344 4666
Q ss_pred EE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC-CCe--EEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
+| .+++. ..+..........+|+| ||++|+..+. ++. |.++|+.++.... +... .......|+|||+.++.
T Consensus 335 ~dl~~g~~-~~Lt~~g~~~~~~~~Sp--DG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~ 409 (448)
T PRK04792 335 VNLASGKV-SRLTFEGEQNLGGSITP--DGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIY 409 (448)
T ss_pred EECCCCCE-EEEecCCCCCcCeeECC--CCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEE
Confidence 66 44543 33322222234457766 5667666544 444 4445666654432 2211 12234579999999887
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 595 (1096)
... .++...+++++. +|...+.+..+.+ .+...+|+|
T Consensus 410 ~~~-~~g~~~l~~~~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 410 STT-YQGKQVLAAVSI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EEe-cCCceEEEEEEC-CCCceEECcCCCC-CcCCCccCC
Confidence 664 233456888887 4555666655433 445566765
No 264
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=2.9e-09 Score=112.38 Aligned_cols=289 Identities=12% Similarity=0.216 Sum_probs=184.2
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEeC-----------CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCC
Q 001343 340 SLHQGSTVISMDFHPSHQTLLLVGSS-----------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408 (1096)
Q Consensus 340 ~l~h~~~V~~v~fsp~g~~llasg~~-----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 408 (1096)
.+.|. .|.-+.|||+.+ ||+|=+. ...++|||+.+|...+... + +.+....
T Consensus 246 RF~Hp-~Vq~idfSP~Ek-YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~--~--------------~~~~~~~ 307 (698)
T KOG2314|consen 246 RFYHP-GVQFIDFSPNEK-YLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFP--V--------------IKSPYLK 307 (698)
T ss_pred hccCC-CceeeecCCccc-eEEEecCCccccCcccCCCceEEEEEccccchhccee--c--------------cCCCccc
Confidence 34454 699999999999 5877542 1579999999999876521 1 1112122
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC-----CcEEEEE-c
Q 001343 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-L 482 (1096)
Q Consensus 409 V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d-----~~i~iwd-~ 482 (1096)
-.-..||.|++|+|--.. ..|.||+..+-..+.. +.+ ....|....|+|.+. +||-=... ..+.+-. .
T Consensus 308 WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~-Ksl--ki~gIr~FswsP~~~--llAYwtpe~~~~parvtL~evP 381 (698)
T KOG2314|consen 308 WPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDK-KSL--KISGIRDFSWSPTSN--LLAYWTPETNNIPARVTLMEVP 381 (698)
T ss_pred cceEEeccCCceeEEecc-ceEEEEecCceeeecc-ccc--CCccccCcccCCCcc--eEEEEcccccCCcceEEEEecC
Confidence 234689999999997766 4889998766332221 111 345688999999987 55532211 2344444 4
Q ss_pred CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEE----------CCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCE
Q 001343 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA----------IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR 552 (1096)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 552 (1096)
+++.+++-.-|. |..+.++...+|.+|+.-- .--.+.|+.++..........-...|...+|-|.|+.
T Consensus 382 s~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdk 459 (698)
T KOG2314|consen 382 SKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDK 459 (698)
T ss_pred ccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCe
Confidence 555555544333 5555666666777776532 1123556666655554444444457889999999998
Q ss_pred EEEEeeccCCCCeEEEEeCCC-C---eeeEEEcCcCccceEEEEEeCCCCEEEEEE---cCCeEEEEeCCCCeEEEEeec
Q 001343 553 LFSCGTSKDGDSFLVEWNESE-G---TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG---EDSQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~-~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~ 625 (1096)
+++.+. .+...++.+|.+++ . +++..+.. ...+.+.|+|.|++++.++ ..|.+.++|+.......+-.
T Consensus 460 F~vi~g-~~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~- 534 (698)
T KOG2314|consen 460 FAVISG-NTVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS- 534 (698)
T ss_pred EEEEEc-cccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccC-
Confidence 887653 23366788887763 2 23333333 2566799999999998864 57899999997533222211
Q ss_pred CCCCCCccEEEEeCCCCEEEEEEC------CCcEEEEEcCC
Q 001343 626 EGGLPNLPRLRFSKEGNLLAVTTA------DNGFKILANAI 660 (1096)
Q Consensus 626 ~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iwd~~~ 660 (1096)
..|. ..+.+.|.|.|+++++++. |...++|+...
T Consensus 535 ~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 535 PEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred cccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 1121 5688999999999999985 45567777643
No 265
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.25 E-value=1.7e-08 Score=107.32 Aligned_cols=123 Identities=19% Similarity=0.217 Sum_probs=83.7
Q ss_pred EEecCCCcEEEEeeCCCeEEEEeeccce---eeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Ee--c-
Q 001343 879 AFHPQDNNIIAIGTEDSTIHIYNVRVDE---LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VH--E- 951 (1096)
Q Consensus 879 ~~s~~d~~~l~s~~~dg~i~iw~~~~~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~--d- 951 (1096)
.|++.|++++.+... |+|.+-|+.... ...|...... ...++-..+...-+++++||+.+.+ .+ .
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~-------~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~ 271 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEA-------EKADGWRPGGWQQVAYHRARDRIYLLADQRAK 271 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccc-------ccccccCCCcceeEEEcCCCCEEEEEecCCcc
Confidence 445535666666655 889888876543 1111111000 0000111124555999999998888 32 2
Q ss_pred -------ceEEEEEcccceeccccccCCCCCCCceEEEEeeCCc-EEEEEe-cCCcEEEEecCCCceeEEE
Q 001343 952 -------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFATF-CDGNIGVFDADTLRLRCYI 1013 (1096)
Q Consensus 952 -------~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~-~la~~~-~dg~i~vwd~~~~~~~~~~ 1013 (1096)
+.|.++|..+++.+..+.. ...+..++|+|||+ +|++.. .++.|.|+|..+++.+..+
T Consensus 272 ~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 272 WTHKTASRFLFVVDAKTGKRLRKIEL----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ccccCCCCEEEEEECCCCeEEEEEeC----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 5799999999999998875 45789999999999 777666 5788999999999877665
No 266
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.25 E-value=5.1e-10 Score=111.15 Aligned_cols=352 Identities=15% Similarity=0.178 Sum_probs=210.1
Q ss_pred eecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c-CCceEEEee-CCCCCeEEEEeeecCCCcEEEEEECCCeEEE
Q 001343 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKA 522 (1096)
Q Consensus 446 ~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 522 (1096)
.+.||.+.|++...-|... -+++.+.|.+++||- . .++--..+. ....+++++.+.+ +...|++|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~--e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS--ESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec--cceEEEEEEecceEEE
Confidence 5779999999988888877 699999999999998 3 343322222 2345677777755 5578999999999988
Q ss_pred EEc----CCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCC
Q 001343 523 WLY----DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1096)
Q Consensus 523 wd~----~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 598 (1096)
+.+ +.......+..|...+..+.|+.....+++++. |..+.---.+.+..+..+.-... .....+.- .
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~----dk~~~~hc~e~~~~lg~Y~~~~~--~t~~~~d~--~ 166 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK----DKQFAWHCTESGNRLGGYNFETP--ASALQFDA--L 166 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc----ccceEEEeeccCCcccceEeecc--CCCCceee--E
Confidence 854 344445566678889999999999999999886 54443333333333322211110 00011111 1
Q ss_pred EEEEEEcCCeEEEEeCCC--CeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccc
Q 001343 599 HFLAVGEDSQIKFWDMDN--VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEAL 676 (1096)
Q Consensus 599 ~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 676 (1096)
+.+.|...|.|.+-.+.. -.++.++.++. ..+.+++|.+....+.+|..|..+.+||+.-...
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~--~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g------------- 231 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHT--GEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG------------- 231 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcCcc--cceEEEEEcCCCcEEEeccccCceEEEeccCCcc-------------
Confidence 445566667666665544 34555555554 4899999999999999999999999999843311
Q ss_pred cCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEE
Q 001343 677 RTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVT 756 (1096)
Q Consensus 677 ~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 756 (1096)
....
T Consensus 232 ----------------------------------------------------------------------------~~~e 235 (404)
T KOG1409|consen 232 ----------------------------------------------------------------------------TAYE 235 (404)
T ss_pred ----------------------------------------------------------------------------eeee
Confidence 1112
Q ss_pred cCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceee-----ecCccccccCcc---ccccccccCC
Q 001343 757 MPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATA-----SAVPQHWLPSSG---LLMANDVAGV 828 (1096)
Q Consensus 757 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~-----~~~i~~w~~~~~---~~~~~~~~g~ 828 (1096)
+.+ |.+.|..+.+.+--+.+++.+.||.|.+|+++.......+-... ......|+.... +.+.....-.
T Consensus 236 l~g---h~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~c 312 (404)
T KOG1409|consen 236 LQG---HNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHC 312 (404)
T ss_pred ecc---chhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhh
Confidence 223 66666667666666779999999999999987542211110000 001222322110 0000000000
Q ss_pred Cc-CCCeeeeeecCCCcEEEEecCCeEEEEEcc-------cceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEE
Q 001343 829 NL-EEAVPCIALSKNDSYVMSATGGKISLFNMM-------TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIY 900 (1096)
Q Consensus 829 ~~-~~~v~~l~~s~dg~~la~~~dg~v~iwd~~-------~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw 900 (1096)
.+ ...+...+-|.-..+...|..=.+++-|.. +...++.+..-...|+.+.+.. +-.+|+|++.|..|.||
T Consensus 313 rkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqe-tlglLvTsG~~Rvi~iw 391 (404)
T KOG1409|consen 313 RKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE-TLGLLVTSGTDRVIKIW 391 (404)
T ss_pred hhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhh-hccceeecCCceEEEEE
Confidence 01 112222222222223333333335554431 1123444433345788998888 77799999999999999
Q ss_pred eecc
Q 001343 901 NVRV 904 (1096)
Q Consensus 901 ~~~~ 904 (1096)
|+..
T Consensus 392 d~~~ 395 (404)
T KOG1409|consen 392 DVRS 395 (404)
T ss_pred echh
Confidence 9874
No 267
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.24 E-value=3.2e-08 Score=109.00 Aligned_cols=246 Identities=13% Similarity=0.145 Sum_probs=161.7
Q ss_pred CCCEEEEEEcCCCCEEEEEEC----CCeEEEEEccCC-CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 406 PISVSRVAWSPDGNYVGVAFT----KHLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~----dg~i~vwd~~~~-~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
......++++|++++|.+... ++.|..|.+... ..+..+............++++|+++. ++++...+|+|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEE
Confidence 345677899999999998876 479999998874 333333333334556788999999994 34444468999999
Q ss_pred E-cC-CceEEE---ee----------CCCCCeEEEEeeecCCCcEEEEEE-CCCeEEEEEcCCCCe-e---eEE-eCCCC
Q 001343 481 E-LS-GRKLFN---FE----------GHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDTMGS-R---VDY-DAPGH 539 (1096)
Q Consensus 481 d-~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~-~---~~~-~~~~~ 539 (1096)
+ .. |..... +. .......++.++| +++++++.. ....|.+|+++.... + ..+ ...+.
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p--dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP--DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T--TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECC--CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 9 33 544332 11 1223467888866 667776654 346899999987652 1 122 23445
Q ss_pred cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC--CCe--eeEEEcCc----Cc-cceEEEEEeCCCCEEEEEE-cCCeE
Q 001343 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES--EGT--IKRTYAGF----RK-KSNGVVQFDTTQNHFLAVG-EDSQI 609 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~--~~~--~~~~~~~~----~~-~~i~~~~~~~~~~~l~~~~-~dg~i 609 (1096)
....++|+|+++++++... ..+.|.++++. ++. .+..+... .. .....+.++|+|++|+++. ..+.|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp SEEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred CCcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 7899999999999988764 37788888887 443 23333221 11 1466799999999988876 56789
Q ss_pred EEEeCC--CCe--EEEEeecCCCCCCccEEEEeCCCCEEEEEE-CCCcEEEEEcC
Q 001343 610 KFWDMD--NVN--ILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANA 659 (1096)
Q Consensus 610 ~iwd~~--~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~ 659 (1096)
.+|+++ ++. .+..+...+. ..+.++++|+|++|+++. .++.|.+|++.
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999994 233 3333433332 578999999999999887 46789999774
No 268
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=5.7e-09 Score=117.70 Aligned_cols=225 Identities=12% Similarity=0.073 Sum_probs=140.6
Q ss_pred cccCCCCEEEEEEcCCCCEEE---EEECC--CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe-C--
Q 001343 402 FKDVPISVSRVAWSPDGNYVG---VAFTK--HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-D-- 473 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~---s~~~d--g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~-- 473 (1096)
+......+..-+|||||+.++ +...+ ..|.+.++.+++..+ +....+.....+|+|||+. |+..+ .
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~--Laf~s~~~g 253 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKL--LAFISDRYG 253 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCE--EEEEECCCC
Confidence 333455667789999998532 33333 368888888875433 3334455667899999994 44433 2
Q ss_pred --CCcEEEEE-cC---CceEEEeeCCCCCeEEEEeeecCCCcEEEEEE-CCCeEEEEEcC--C-CCeeeEEeCCCCcEEE
Q 001343 474 --DKLIKVWE-LS---GRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYD--T-MGSRVDYDAPGHWCTT 543 (1096)
Q Consensus 474 --d~~i~iwd-~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~--~-~~~~~~~~~~~~~i~~ 543 (1096)
|..+..|+ .. ++......++.......+|+| ||+.|+..+ .+|...+|.+. . +.....+......+..
T Consensus 254 ~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP--DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~ 331 (428)
T PRK01029 254 NPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP--DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSC 331 (428)
T ss_pred CcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccc
Confidence 22344477 43 233333333333445677866 667766655 56766666543 2 2223344444456778
Q ss_pred EEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEc---CCeEEEEeCCCCeEE
Q 001343 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNIL 620 (1096)
Q Consensus 544 l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~ 620 (1096)
..|+|||+.|+..... .+...|++||+.+++......+ .. .+....|+|+|+.|+..+. ...|+++|+.+++..
T Consensus 332 p~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~~-~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 332 PAWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-PE-NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred eeECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-CC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 9999999999877642 2356899999998876544333 22 4556889999998876543 357999999887765
Q ss_pred EEeecCCCCCCccEEEEeCC
Q 001343 621 TSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~ 640 (1096)
......+ .+...+|+|-
T Consensus 409 ~Lt~~~g---~~~~p~Ws~~ 425 (428)
T PRK01029 409 KIVIGSG---EKRFPSWGAF 425 (428)
T ss_pred EeecCCC---cccCceecCC
Confidence 5443222 4567788874
No 269
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.21 E-value=1.4e-09 Score=107.62 Aligned_cols=159 Identities=14% Similarity=0.155 Sum_probs=111.0
Q ss_pred EEEEEecCCCcEEEEEEeC-C-------CcEEEEE--cCCceEEEeeC-CCCCeEEEEeeecCCCcEE--EEEECCCeEE
Q 001343 455 NDLAFAYPNKLLCVVTCGD-D-------KLIKVWE--LSGRKLFNFEG-HEAPVYSICPHHKENIQFI--FSTAIDGKIK 521 (1096)
Q Consensus 455 ~~l~~s~d~~~~~l~s~s~-d-------~~i~iwd--~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l--~s~~~dg~i~ 521 (1096)
..+.|+++|..+++.+... | +...+|. ..+.....+.- ..++|.+++|+|.+ ..+ +.|..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g--~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNG--NEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCC--CEEEEEEccCCcccE
Confidence 4678899998633333311 1 2344444 44455555543 34579999998854 454 3455678999
Q ss_pred EEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEE
Q 001343 522 AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601 (1096)
Q Consensus 522 iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 601 (1096)
+||++ .+.+..+ +...+..+.|+|+|+++++++.. +..|.|.+||.++.+.+..+... .+..++|+|+|++++
T Consensus 87 lyd~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~-n~~G~l~~wd~~~~~~i~~~~~~---~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 87 LYDVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFG-NLNGDLEFWDVRKKKKISTFEHS---DATDVEWSPDGRYLA 159 (194)
T ss_pred EEcCc-ccEeEee--cCCCceEEEECCCCCEEEEEEcc-CCCcEEEEEECCCCEEeeccccC---cEEEEEEcCCCCEEE
Confidence 99996 3333333 45678899999999999998752 23578999999988888776543 467899999999999
Q ss_pred EEE------cCCeEEEEeCCCCeEEEEe
Q 001343 602 AVG------EDSQIKFWDMDNVNILTST 623 (1096)
Q Consensus 602 ~~~------~dg~i~iwd~~~~~~~~~~ 623 (1096)
+++ .|+.++||+.. |+.+...
T Consensus 160 ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEEeccceeccccEEEEEec-CeEeEec
Confidence 976 37889999984 5555544
No 270
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.21 E-value=2.4e-09 Score=114.76 Aligned_cols=192 Identities=14% Similarity=0.175 Sum_probs=153.1
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEe------c------------CCCcEEEEEEeCCCcE
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA------Y------------PNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s------~------------d~~~~~l~s~s~d~~i 477 (1096)
|-..|+|....||.+++|+...++....+.....-.+.-++..|. | .+....++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 456799999999999999999876554333222334445555552 1 1222378889999999
Q ss_pred EEEE-cCCceEEEee--CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEE
Q 001343 478 KVWE-LSGRKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 478 ~iwd-~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 554 (1096)
.+++ ..|+....+. +|.++|.++.++. +-..|.+++.|+.+..|+.........+......+.+++++|||..++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 9999 8888777775 6899999998754 446899999999999999999988889988888999999999999999
Q ss_pred EEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC-----CCEEEEE-EcCCeEEEEeCCC
Q 001343 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-----QNHFLAV-GEDSQIKFWDMDN 616 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~-~~dg~i~iwd~~~ 616 (1096)
++ .+.|.+||+++++.+..|.||.. +++++.|..+ |.+++++ ..+..+.+|-+..
T Consensus 161 ~a------s~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TA------SRQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ec------cceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 98 45899999999999999999988 8999998876 6666664 3556677887654
No 271
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=1e-07 Score=96.79 Aligned_cols=286 Identities=14% Similarity=0.209 Sum_probs=181.4
Q ss_pred eeecCCCCcceE--EeecCCCceEEEEEcCCCCcEEEEEe-C--CCeEEEEecCC--CCeeecccceeecccccCccccc
Q 001343 327 TWSLDDLPRTVA--VSLHQGSTVISMDFHPSHQTLLLVGS-S--NGEITLWELAM--RDRLVSKPFKIWDMAACSLPFQA 399 (1096)
Q Consensus 327 ~~~~~~~~~~~~--~~l~h~~~V~~v~fsp~g~~llasg~-~--dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~ 399 (1096)
+|.++...+++. ....+.+.++-++|+|++++ |.++- . +|.|.-|.++. |+...-. .
T Consensus 20 v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~-LY~v~~~~~~ggvaay~iD~~~G~Lt~ln---------------~ 83 (346)
T COG2706 20 VFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRH-LYVVNEPGEEGGVAAYRIDPDDGRLTFLN---------------R 83 (346)
T ss_pred EEEEeCcccccchhhhccccCCCceEEECCCCCE-EEEEEecCCcCcEEEEEEcCCCCeEEEee---------------c
Confidence 788876555444 33458889999999999985 55543 3 57888888875 4443210 0
Q ss_pred cccccCCCCEEEEEEcCCCCEEEEEEC-CCeEEEEEccCCCccccceeecccccC----------EEEEEEecCCCcEEE
Q 001343 400 SIFKDVPISVSRVAWSPDGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGA----------VNDLAFAYPNKLLCV 468 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~spd~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~l~~h~~~----------v~~l~~s~d~~~~~l 468 (1096)
..+.+ .+-+.++++++|++|+++.. -|.|.++-++....+........|.+. +....|.|+++ +|
T Consensus 84 ~~~~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~--~l 159 (346)
T COG2706 84 QTLPG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR--YL 159 (346)
T ss_pred cccCC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC--EE
Confidence 11222 23488999999999998865 489999999663333332233456666 88999999999 55
Q ss_pred EEEe-CCCcEEEEE-cCCceEEEe---eCCCCCeEEEEeeecCCCcEEEEEE-CCCeEEEEEcCCCCe-eeEEeC-----
Q 001343 469 VTCG-DDKLIKVWE-LSGRKLFNF---EGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDTMGS-RVDYDA----- 536 (1096)
Q Consensus 469 ~s~s-~d~~i~iwd-~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~-~~~~~~----- 536 (1096)
++++ .-..|.+|+ .+|+....- -.....-..|.|+| ++++....+ -+++|.+|.++.... ...+..
T Consensus 160 ~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp--n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP 237 (346)
T COG2706 160 VVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP--NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP 237 (346)
T ss_pred EEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC--CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc
Confidence 5554 234788999 666543221 12344567899988 556665554 589999999887522 222211
Q ss_pred ----CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC--CCeeeEE-EcCcCccceEEEEEeCCCCEEEEEEcC-Ce
Q 001343 537 ----PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES--EGTIKRT-YAGFRKKSNGVVQFDTTQNHFLAVGED-SQ 608 (1096)
Q Consensus 537 ----~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~--~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~ 608 (1096)
...+...+.+++||++|.++.. +...|.++.+. ++++... .....+.......+++.+++|+++..+ ..
T Consensus 238 ~dF~g~~~~aaIhis~dGrFLYasNR---g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~ 314 (346)
T COG2706 238 EDFTGTNWAAAIHISPDGRFLYASNR---GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDN 314 (346)
T ss_pred cccCCCCceeEEEECCCCCEEEEecC---CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCc
Confidence 1236789999999999999754 34577777654 3432211 111112235668899999999998854 46
Q ss_pred EEEEeCC--CCeEEEEeecCCCCCCccEEEEe
Q 001343 609 IKFWDMD--NVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 609 i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
|.+|.++ +|++...... .......|+.|.
T Consensus 315 i~vf~~d~~TG~L~~~~~~-~~~p~Pvcv~f~ 345 (346)
T COG2706 315 ITVFERDKETGRLTLLGRY-AVVPEPVCVKFL 345 (346)
T ss_pred EEEEEEcCCCceEEecccc-cCCCCcEEEEEc
Confidence 8888765 4554433331 112245566653
No 272
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.19 E-value=3.5e-08 Score=105.02 Aligned_cols=264 Identities=13% Similarity=0.137 Sum_probs=166.0
Q ss_pred CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC----------CCeEEEEEcc
Q 001343 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT----------KHLIQLYSYA 436 (1096)
Q Consensus 367 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~----------dg~i~vwd~~ 436 (1096)
++|.+.|..+++.+.... .|.. + ..+ +||||+.|+++.. +..|.+||..
T Consensus 27 ~~v~ViD~~~~~v~g~i~------------------~G~~-P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTD------------------GGFL-P-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEEE------------------ccCC-C-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 899999999988775411 1111 1 124 9999999888765 6799999999
Q ss_pred CCCccccceeecc-----cccCEEEEEEecCCCcEEEEEE--eCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCC
Q 001343 437 GSNDLRQHSQIDA-----HVGAVNDLAFAYPNKLLCVVTC--GDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENI 508 (1096)
Q Consensus 437 ~~~~~~~~~~l~~-----h~~~v~~l~~s~d~~~~~l~s~--s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~ 508 (1096)
+.+.+..+. +.. .......++++|||+. |+.. +.+..|.+.| .+++.+..+.--.. . .+ + +..+.
T Consensus 86 t~~~~~~i~-~p~~p~~~~~~~~~~~~ls~dgk~--l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~-~v-y-~t~e~ 158 (352)
T TIGR02658 86 THLPIADIE-LPEGPRFLVGTYPWMTSLTPDNKT--LLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-Y-HI-F-PTAND 158 (352)
T ss_pred cCcEEeEEc-cCCCchhhccCccceEEECCCCCE--EEEecCCCCCEEEEEECCCCcEEEEEeCCCC-c-EE-E-EecCC
Confidence 988776432 111 1223458899999994 4433 3489999999 88888887764221 1 11 1 11122
Q ss_pred cEEEEEECCCeEEEEEcCCCCeeeE-----EeCCCCcE-EEEEEcC-CCCEEEEEeeccCCCCeEEEEeCCCC-----ee
Q 001343 509 QFIFSTAIDGKIKAWLYDTMGSRVD-----YDAPGHWC-TTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEG-----TI 576 (1096)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~i-~~l~~s~-~~~~l~~~~~~~~~~~~i~iwd~~~~-----~~ 576 (1096)
.+ .+-+.||......++....... +.....++ ..-.|++ +|+++++.. +|.|++.|+... +.
T Consensus 159 ~~-~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~ 232 (352)
T TIGR02658 159 TF-FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPA 232 (352)
T ss_pred cc-EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceecce
Confidence 22 2334566655544433222111 11100000 0013455 888777765 689999996432 22
Q ss_pred eEEEcCc------CccceEEEEEeCCCCEEEEEE----------cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCC
Q 001343 577 KRTYAGF------RKKSNGVVQFDTTQNHFLAVG----------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 577 ~~~~~~~------~~~~i~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1096)
...+... .......++++++++.+++.. ..+.|.++|..+++.+..+.... .+..++++||
T Consensus 233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~D 309 (352)
T TIGR02658 233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQD 309 (352)
T ss_pred eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCC
Confidence 2222211 111334499999999888843 22579999999999999887643 6899999999
Q ss_pred CC-EEEEEE-CCCcEEEEEcCCCccccccc
Q 001343 641 GN-LLAVTT-ADNGFKILANAIGLRSLRAV 668 (1096)
Q Consensus 641 ~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~ 668 (1096)
++ +|++.. .++.|.++|..++ +.++.+
T Consensus 310 gkp~lyvtn~~s~~VsViD~~t~-k~i~~i 338 (352)
T TIGR02658 310 AKPLLYALSTGDKTLYIFDAETG-KELSSV 338 (352)
T ss_pred CCeEEEEeCCCCCcEEEEECcCC-eEEeee
Confidence 99 777666 5788999999888 444444
No 273
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.18 E-value=4.4e-09 Score=112.84 Aligned_cols=192 Identities=18% Similarity=0.311 Sum_probs=149.2
Q ss_pred CCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE------cC-----------
Q 001343 354 PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW------SP----------- 416 (1096)
Q Consensus 354 p~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~------sp----------- 416 (1096)
|-+. ++|....||.++||++.+++...... | ...-.+..++..| +|
T Consensus 3 ~~~~-~~A~~~~~g~l~iw~t~~~~~~~e~~-----------p-----~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~ 65 (541)
T KOG4547|consen 3 PALD-YFALSTGDGRLRIWDTAKNQLQQEFA-----------P-----IASLSGTCTYTKWGLSADYSPMKWLSLEKAKK 65 (541)
T ss_pred chhh-eEeecCCCCeEEEEEccCceeeeeec-----------c-----chhccCcceeEEEEEEeccchHHHHhHHHHhh
Confidence 3344 69999999999999999887654311 0 0111233333333 22
Q ss_pred ---CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeC
Q 001343 417 ---DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (1096)
Q Consensus 417 ---d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~ 492 (1096)
|-..++-|...|.|.+|++..|+....+ +-..|.+.|.++.++.+-. .|.|++.|+.+..|+ ..++.++.+++
T Consensus 66 ~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 66 ASLDTSMLVLGTPQGSVLLYSVAGGEITAKL-STDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKE 142 (541)
T ss_pred ccCCceEEEeecCCccEEEEEecCCeEEEEE-ecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeecc
Confidence 3346777888999999999998765543 3457999999999998888 899999999999999 88899999999
Q ss_pred CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCC-----CCEEEEEeeccCCCCeEE
Q 001343 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-----GSRLFSCGTSKDGDSFLV 567 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-----~~~l~~~~~~~~~~~~i~ 567 (1096)
....+.+++++| |+..+++++ +.|++||+++.+.+..+.+|.++|.++.|.-+ |.++++... .+..+.
T Consensus 143 ~~~~~~sl~is~--D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~---~~r~i~ 215 (541)
T KOG4547|consen 143 QKPLVSSLCISP--DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA---AERGIT 215 (541)
T ss_pred CCCccceEEEcC--CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc---ccccee
Confidence 999999999876 678888876 79999999999999999999999999999877 777776543 255566
Q ss_pred EEeCC
Q 001343 568 EWNES 572 (1096)
Q Consensus 568 iwd~~ 572 (1096)
+|-..
T Consensus 216 ~w~v~ 220 (541)
T KOG4547|consen 216 VWVVE 220 (541)
T ss_pred EEEEE
Confidence 66543
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.17 E-value=2.4e-09 Score=106.46 Aligned_cols=255 Identities=12% Similarity=0.175 Sum_probs=156.6
Q ss_pred eeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeC-CCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcE
Q 001343 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM-DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1096)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 653 (1096)
..++.+.|+.+ .++....-|..+-+++.+.|.++++|-- +.++....+.... ..+++++.+.++...|++|-..|++
T Consensus 15 ~ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m-P~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 15 ELLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM-PSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC-CCCceEeeeeccceEEEEEEecceE
Confidence 34566777776 6666666777788999999999999964 4455555544332 3478999999999999999999999
Q ss_pred EEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccC
Q 001343 654 KILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDD 733 (1096)
Q Consensus 654 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 733 (1096)
.-+.+..........+.. ..+..++..+.|+..-..+++...+.-..+. +.-
T Consensus 93 tefs~sedfnkm~~~r~~--~~h~~~v~~~if~~~~e~V~s~~~dk~~~~h--------------------------c~e 144 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDY--LAHQARVSAIVFSLTHEWVLSTGKDKQFAWH--------------------------CTE 144 (404)
T ss_pred EEEEhhhhhhhcchhhhh--hhhhcceeeEEecCCceeEEEeccccceEEE--------------------------eec
Confidence 999876653322222211 1223445566666555555444332111100 000
Q ss_pred CCCCccceeeeeeecCCceEE-EEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccc
Q 001343 734 VTDKPKPWQLAEIVDSGQCRL-VTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQH 812 (1096)
Q Consensus 734 ~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~ 812 (1096)
.+..+--|.+.......++.. ..+.| .|..+|+.+.+-+.+-.++
T Consensus 145 ~~~~lg~Y~~~~~~t~~~~d~~~~fvG--d~~gqvt~lr~~~~~~~~i-------------------------------- 190 (404)
T KOG1409|consen 145 SGNRLGGYNFETPASALQFDALYAFVG--DHSGQITMLKLEQNGCQLI-------------------------------- 190 (404)
T ss_pred cCCcccceEeeccCCCCceeeEEEEec--ccccceEEEEEeecCCceE--------------------------------
Confidence 001111111110000000000 01111 0333333333333222111
Q ss_pred cccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceE-EEeecCCCCCeeEEEEecCCCcEEEE
Q 001343 813 WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKV-MTTFMSPPPASTFLAFHPQDNNIIAI 890 (1096)
Q Consensus 813 w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~-~~~~~~h~~~i~~l~~s~~d~~~l~s 890 (1096)
..+.| |.+.+.+++|.+..++|.+|. |..|.+||+..++- ...+.+|...|..+...+ --+.+++
T Consensus 191 ----------~~~~~--h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~t~~l~S 257 (404)
T KOG1409|consen 191 ----------TTFNG--HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-HTRQLIS 257 (404)
T ss_pred ----------EEEcC--cccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-hheeeee
Confidence 13455 899999999999999999998 78899999954433 346779999999999888 7889999
Q ss_pred eeCCCeEEEEeeccce
Q 001343 891 GTEDSTIHIYNVRVDE 906 (1096)
Q Consensus 891 ~~~dg~i~iw~~~~~~ 906 (1096)
++.||.|.+|+++...
T Consensus 258 ~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 258 CGEDGGIVVWNMNVKR 273 (404)
T ss_pred ccCCCeEEEEecccee
Confidence 9999999999987654
No 275
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=2.1e-10 Score=120.05 Aligned_cols=244 Identities=13% Similarity=0.195 Sum_probs=170.7
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC-Cccc---cceeecccccCEEEEEEecCCCcEEEEEEeCCCc
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLR---QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~-~~~~---~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~ 476 (1096)
.+.||+..|..++--.+.+-+++++.|.+|++|.+... ..+. ...+++.|+.+|.++.|..+.+ .++++ ||.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence 48899999999988888889999999999999998742 2222 3446889999999999999988 66655 899
Q ss_pred EEEEE-cCCceEEEee--CCCCCeEEEEeeecCCCcEEEEE-ECCCeEEEEEcCCCCeeeEEe-----CCCCcEEEEEEc
Q 001343 477 IKVWE-LSGRKLFNFE--GHEAPVYSICPHHKENIQFIFST-AIDGKIKAWLYDTMGSRVDYD-----APGHWCTTMLYS 547 (1096)
Q Consensus 477 i~iwd-~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~l~~s 547 (1096)
|.+|| .-|+.+.... ...+.+..+...+.-+...++.| +...+|+++|.+..+-...++ +.+..+.++++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 99999 8887775432 11222333332234344556555 788999999999877665543 344578999999
Q ss_pred CCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEE-EeCCCCeEEEEeecC
Q 001343 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF-WDMDNVNILTSTDAE 626 (1096)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~ 626 (1096)
+.|+.++++-. .|.|.+.|.++|+.+...+...- ....++ .|....++....|.++.+ |..-.+.........
T Consensus 886 ~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpp 959 (1034)
T KOG4190|consen 886 DKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPP 959 (1034)
T ss_pred cCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCC
Confidence 99999998876 99999999999998877665432 111122 355567777778888888 988777655444322
Q ss_pred CCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 627 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
.. +.. -...-|.-++++.....+.+|.-
T Consensus 960 pe--pah--flqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 960 PE--PAH--FLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred Cc--chh--hhhccCceeEEeccCcEEEEEec
Confidence 11 111 01123556777776667777753
No 276
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.09 E-value=6e-10 Score=132.51 Aligned_cols=200 Identities=19% Similarity=0.295 Sum_probs=158.1
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE
Q 001343 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1096)
Q Consensus 341 l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 420 (1096)
.++-..|.++.=+|... +.+||+.||.|++|.+..++.+.. |+ -.|. +.|+.+.|+.+|+.
T Consensus 2205 k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~qGnk 2265 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQGNK 2265 (2439)
T ss_pred ecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhcccCCc
Confidence 34667899999999998 588999999999999998887753 11 1223 78999999999999
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe---CCCcEEEEE--cCCceEEEeeCCCC
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG---DDKLIKVWE--LSGRKLFNFEGHEA 495 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s---~d~~i~iwd--~~~~~~~~~~~~~~ 495 (1096)
+.++..||.+.+|.+.. +.+...+.|.....++.|-. . .+++++ .++.+.+|| ..+..-..-..|.+
T Consensus 2266 ~~i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ 2337 (2439)
T KOG1064|consen 2266 FGIVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDG 2337 (2439)
T ss_pred eeeeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeeecCC
Confidence 99999999999999872 33335778999999999976 3 566654 568999999 44443333388999
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1096)
.++++++.|. -+.|++|+.+|.|++||++..+.+..+.. +. ...++++++. .|.++||++....
T Consensus 2338 gaT~l~~~P~--~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss----~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2338 GATVLAYAPK--HQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSS----EGNIKIWRLSEFG 2401 (2439)
T ss_pred CceEEEEcCc--ceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCc----ccceEEEEccccc
Confidence 9999999884 48999999999999999987766655433 33 4557777776 9999999999888
Q ss_pred eeEEEcCc
Q 001343 576 IKRTYAGF 583 (1096)
Q Consensus 576 ~~~~~~~~ 583 (1096)
.++++...
T Consensus 2402 ll~~~p~e 2409 (2439)
T KOG1064|consen 2402 LLHTFPSE 2409 (2439)
T ss_pred hhhcCchh
Confidence 77777643
No 277
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.06 E-value=3.2e-08 Score=96.66 Aligned_cols=269 Identities=12% Similarity=0.069 Sum_probs=167.3
Q ss_pred CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC---CCC-EEEEEECCCeEEEEEccCCCcc
Q 001343 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP---DGN-YVGVAFTKHLIQLYSYAGSNDL 441 (1096)
Q Consensus 366 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---d~~-~l~s~~~dg~i~vwd~~~~~~~ 441 (1096)
.|.+.+|++...+...-. .+..-..+.+..+.|+. +|. .|+-+..+|.|.++........
T Consensus 45 ~Gkl~Lys~~d~~~~~l~----------------~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss 108 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLD----------------TLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS 108 (339)
T ss_pred ccceEEEeecccccCccc----------------eeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee
Confidence 467778887665543210 11122355677788864 455 5666777899999987643322
Q ss_pred ccceeeccccc---CEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceE--EEeeCCCCCeEEEEeeecCCCcEEEEEE
Q 001343 442 RQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTA 515 (1096)
Q Consensus 442 ~~~~~l~~h~~---~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 515 (1096)
..+..+..-.- ...++.|++.+. .++++-.+|.+.+-+ ...... +.++.|+-+.+...|+.. +.+++++|+
T Consensus 109 ~~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~-~pnlvytGg 185 (339)
T KOG0280|consen 109 VHLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK-EPNLVYTGG 185 (339)
T ss_pred eeecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC-CCceEEecC
Confidence 22112222222 245778898888 688888899999766 444443 478999999999998754 447999999
Q ss_pred CCCeEEEEEcCCCC-eeeE-EeCCCCcEEEEEEcC-CCCEEEEEeeccCCCCeEEEEeCC-CCeeeEEEcCcCccceEEE
Q 001343 516 IDGKIKAWLYDTMG-SRVD-YDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVV 591 (1096)
Q Consensus 516 ~dg~i~iwd~~~~~-~~~~-~~~~~~~i~~l~~s~-~~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~i~~~ 591 (1096)
.|+.+..||++... .+.. ...|...|.++.-+| .+.++++|+. +..|++||.+ .++++..-. ....|..+
T Consensus 186 DD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY----De~i~~~DtRnm~kPl~~~~--v~GGVWRi 259 (339)
T KOG0280|consen 186 DDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY----DECIRVLDTRNMGKPLFKAK--VGGGVWRI 259 (339)
T ss_pred CCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecc----ccceeeeehhcccCccccCc--cccceEEE
Confidence 99999999999433 3332 345667888888876 5778899987 8899999998 455554332 22478888
Q ss_pred EEeCCCC-EEEEEEcCCeEEEEeCCCCeEE-----EEeecCCCCCCccEEEEeCCCCEEEEEE-CCCcEE-EEEcCCC
Q 001343 592 QFDTTQN-HFLAVGEDSQIKFWDMDNVNIL-----TSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFK-ILANAIG 661 (1096)
Q Consensus 592 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~-iwd~~~~ 661 (1096)
.++|.-. .++.+..-+..+|-+...+... .....|. +-++.-.|......+|+++ .|+.++ +|-.-++
T Consensus 260 ~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hd--Sl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 260 KHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHD--SLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EecchhhhHHHHHHHhcCceEEEecccccchheeeecccccc--ceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 8888542 2233333333556665543221 2222222 1334444543345677765 355544 6654443
No 278
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.01 E-value=5.5e-08 Score=95.04 Aligned_cols=189 Identities=17% Similarity=0.125 Sum_probs=134.9
Q ss_pred CCceEEEEEcC---CCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCC---CEEEEEEcCC
Q 001343 344 GSTVISMDFHP---SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI---SVSRVAWSPD 417 (1096)
Q Consensus 344 ~~~V~~v~fsp---~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spd 417 (1096)
+..+..+.|.- +|...++-+..+|.|.++.....+.... ++ + +....- .-.++.|++.
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~---------~-----ls~~ki~~~~~lslD~~~~ 132 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LR---------G-----LSSKKISVVEALSLDISTS 132 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ec---------c-----cchhhhhheeeeEEEeecc
Confidence 34566666653 3443566677789999988654332211 00 0 111111 2457899999
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c-CCceEEE-eeCCC
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFN-FEGHE 494 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~-~~~~~~~-~~~~~ 494 (1096)
+..++++..+|.+.+-+..... +.....++.|.-+.+...|+..... ++.+||.|+.+..|| . .++.+.. .+.|.
T Consensus 133 ~~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~ 210 (339)
T KOG0280|consen 133 GTKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHT 210 (339)
T ss_pred CceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeee
Confidence 9999999999999865544432 3333468899999999999987766 899999999999999 4 5566655 66789
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 551 (1096)
..|.++.-+|. .+.+|++|+.|-.|++||.++......-..-.+.|..+..+|.-.
T Consensus 211 ~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 211 SGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred cceEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhh
Confidence 99999987654 568999999999999999996655554444457899999988543
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.00 E-value=1.5e-09 Score=129.35 Aligned_cols=201 Identities=12% Similarity=0.214 Sum_probs=165.0
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
++.|-..|.++.=+|...+.++|+.||.|++|....++.+....+. |. ..|+.+.|+.+|+ .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 4445667888988999999999999999999999988877655433 33 8999999999999 788889999999999
Q ss_pred cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEE---CCCeEEEEEcCCCCe-eeEEeCCCCcEEEEEEcCCCCEEEEEe
Q 001343 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 482 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
...++....+.|........|.. ..+++++ .++.+.+||...... -.....|.+.++++++-|..+.+++|+
T Consensus 2280 ~~pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2280 ASPKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred cCCcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 77888888999999888888854 3456553 578899998654322 234478888999999999999999999
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeec
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1096)
. +|.|++||++..+.+++++. +. ...+|++|+..|.++||++.....+..+..
T Consensus 2356 r----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 R----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred C----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 8 99999999998888777664 33 457899999999999999998877776654
No 280
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.99 E-value=6.3e-07 Score=101.04 Aligned_cols=263 Identities=14% Similarity=0.115 Sum_probs=166.2
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~ 438 (1096)
.+++++.+|.|.-+|..+|+.+-...+. ..... ... .++..+++++.++.+..+|..+|
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~----------------~~~~~---~p~--v~~~~v~v~~~~g~l~ald~~tG 125 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLD----------------ERLSG---GVG--ADGGLVFVGTEKGEVIALDAEDG 125 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCC----------------CCccc---ceE--EcCCEEEEEcCCCEEEEEECCCC
Confidence 4777788999999999999876431110 00111 111 25678888889999999999998
Q ss_pred CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeE-----EEEeeecCCCcEEE
Q 001343 439 NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY-----SICPHHKENIQFIF 512 (1096)
Q Consensus 439 ~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~l~ 512 (1096)
+.+.... + .+.+.+.-... +. .++.++.++.++.|| .+|+.+..+......+. +... . + ..++
T Consensus 126 ~~~W~~~-~---~~~~~~~p~v~-~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~-~-~~v~ 194 (377)
T TIGR03300 126 KELWRAK-L---SSEVLSPPLVA-NG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--A-D-GGVL 194 (377)
T ss_pred cEeeeec-c---CceeecCCEEE-CC--EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--E-C-CEEE
Confidence 8764321 1 12222211112 33 466677899999999 89998877654332211 1111 1 2 3678
Q ss_pred EEECCCeEEEEEcCCCCeeeEEeCCCC----c------E-EEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEc
Q 001343 513 STAIDGKIKAWLYDTMGSRVDYDAPGH----W------C-TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1096)
Q Consensus 513 s~~~dg~i~iwd~~~~~~~~~~~~~~~----~------i-~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1096)
.+..+|.+..+|.++++.......... . + .+..+ .+..+++++. ++.++.||..+|+.+....
T Consensus 195 ~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~----~g~l~a~d~~tG~~~W~~~ 268 (377)
T TIGR03300 195 VGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSY----QGRVAALDLRSGRVLWKRD 268 (377)
T ss_pred EECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEc----CCEEEEEECCCCcEEEeec
Confidence 888899999999988877654332110 0 0 11111 2456666655 8899999999998876655
Q ss_pred CcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 582 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
... ..... ..+..+++++.+|.++.+|..+++.+......... ....... .+..+++++.+|.+.++|..++
T Consensus 269 ~~~---~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~-~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 269 ASS---YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYR-QLTAPAV--VGGYLVVGDFEGYLHWLSREDG 340 (377)
T ss_pred cCC---ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCC-ccccCEE--ECCEEEEEeCCCEEEEEECCCC
Confidence 211 11112 24678888889999999999999887665322111 1222222 4668899999999999999888
Q ss_pred ccccccc
Q 001343 662 LRSLRAV 668 (1096)
Q Consensus 662 ~~~~~~~ 668 (1096)
+.+..+
T Consensus 341 -~~~~~~ 346 (377)
T TIGR03300 341 -SFVARL 346 (377)
T ss_pred -CEEEEE
Confidence 443333
No 281
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.99 E-value=2.9e-07 Score=103.78 Aligned_cols=259 Identities=12% Similarity=0.098 Sum_probs=160.3
Q ss_pred CCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEc
Q 001343 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSY 435 (1096)
Q Consensus 356 g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~ 435 (1096)
+. .+++++.+|.+..+|..+|+.+-... + .+.+.+.-.. .+..++.++.++.+..||.
T Consensus 105 ~~-~v~v~~~~g~l~ald~~tG~~~W~~~-----------------~---~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~ 162 (377)
T TIGR03300 105 GG-LVFVGTEKGEVIALDAEDGKELWRAK-----------------L---SSEVLSPPLV-ANGLVVVRTNDGRLTALDA 162 (377)
T ss_pred CC-EEEEEcCCCEEEEEECCCCcEeeeec-----------------c---CceeecCCEE-ECCEEEEECCCCeEEEEEc
Confidence 44 46678889999999999998764311 0 1111111000 3456777888999999999
Q ss_pred cCCCccccceeecccccCE-----EEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC-------CeEEEEe
Q 001343 436 AGSNDLRQHSQIDAHVGAV-----NDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA-------PVYSICP 502 (1096)
Q Consensus 436 ~~~~~~~~~~~l~~h~~~v-----~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~-------~v~~~~~ 502 (1096)
++|+.+-.. ......+ ...... + . .++.+..++.+..+| .+|+.+........ ....+.-
T Consensus 163 ~tG~~~W~~---~~~~~~~~~~~~~sp~~~-~-~--~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~ 235 (377)
T TIGR03300 163 ATGERLWTY---SRVTPALTLRGSASPVIA-D-G--GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDG 235 (377)
T ss_pred CCCceeeEE---ccCCCceeecCCCCCEEE-C-C--EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCC
Confidence 998765432 1111111 111222 2 3 567788899999999 88887755431100 0001111
Q ss_pred eecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcC
Q 001343 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (1096)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 582 (1096)
.|.-.+..+++++.+|.+..||..+++......... ..... .++..+++++. ++.++.+|..+++.+.....
T Consensus 236 ~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--~~~p~--~~~~~vyv~~~----~G~l~~~d~~tG~~~W~~~~ 307 (377)
T TIGR03300 236 DPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS--YQGPA--VDDNRLYVTDA----DGVVVALDRRSGSELWKNDE 307 (377)
T ss_pred ccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC--ccCce--EeCCEEEEECC----CCeEEEEECCCCcEEEcccc
Confidence 111123578888899999999999888776554221 12222 24566776654 89999999999988766532
Q ss_pred cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEE
Q 001343 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1096)
Q Consensus 583 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1096)
........... .+..+++++.+|.|+++|..+++.+..+..+... ......+. + ..|+.++.||.|..|
T Consensus 308 ~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~-~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 308 LKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSG-IASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred ccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCc-cccCCEEE-C-CEEEEEeCCceEEEe
Confidence 22212222222 3678999999999999999999999888765431 11222222 3 468889999988765
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=5.5e-09 Score=109.67 Aligned_cols=300 Identities=10% Similarity=0.097 Sum_probs=190.1
Q ss_pred ecCCCCcceEEe---ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCC-eeecccceeecccccCcccccccccc
Q 001343 329 SLDDLPRTVAVS---LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD-RLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 329 ~~~~~~~~~~~~---l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
+.+.+....++. .+|...|..++--.+.+. ++++++|.+|++|.+.... .+.+ ..|. -++..
T Consensus 717 dt~~ln~~~irL~nf~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~t--------saCQ-----fTY~a 782 (1034)
T KOG4190|consen 717 DTDNLNFDHIRLCNFTGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGT--------SACQ-----FTYQA 782 (1034)
T ss_pred CCcccccceeeeecccCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCcccc--------ceee-----eEhhh
Confidence 334444433433 459999999987777664 8899999999999987532 2211 1111 13667
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC-CCcEEEEEEeCCCcEEEEE-c
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-L 482 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d-~~~~~l~s~s~d~~i~iwd-~ 482 (1096)
|+.+|..+.|-.+.++++++ ||-|.+||.--|..+.+...-..| +.+..+.-.++ .+.++++.|+...+|+++| .
T Consensus 783 Hkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaR 859 (1034)
T KOG4190|consen 783 HKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDAR 859 (1034)
T ss_pred ccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecc
Confidence 99999999999999999876 889999998877766543222222 23333333333 3333555568899999999 8
Q ss_pred CCceEEEeeC-----CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEe
Q 001343 483 SGRKLFNFEG-----HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 483 ~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
.++-...++- ...-+.++++.+ .|+.++++-.+|.|.+.|.++++.+..+..-......++- |..+.++...
T Consensus 860 sce~~~E~kVcna~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~sa 936 (1034)
T KOG4190|consen 860 SCEWTCELKVCNAPGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSA 936 (1034)
T ss_pred cccceeeEEeccCCCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhc
Confidence 8776666543 345577888866 5579999999999999999998877665544333333332 4445555444
Q ss_pred eccCCCCeEEE-EeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC----CeEEEEeecCCCCCCc
Q 001343 558 TSKDGDSFLVE-WNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN----VNILTSTDAEGGLPNL 632 (1096)
Q Consensus 558 ~~~~~~~~i~i-wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v 632 (1096)
. +..+.+ |...++....+.+.... +.. ....-|..++++.....+.+|--.. ...+..++...-.+..
T Consensus 937 l----dHslaVnWhaldgimh~q~kpppe-pah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~l 1009 (1034)
T KOG4190|consen 937 L----DHSLAVNWHALDGIMHLQDKPPPE-PAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTL 1009 (1034)
T ss_pred c----cceeEeeehhcCCeeeeccCCCCc-chh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCcc
Confidence 3 777777 87766665544443322 111 1112355677777667777775321 1223333333333466
Q ss_pred cEEEEeCCCCEEEEEECCCcEEE
Q 001343 633 PRLRFSKEGNLLAVTTADNGFKI 655 (1096)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~i 655 (1096)
++++.-|=..-+..|...|.|.+
T Consensus 1010 Tala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1010 TALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred ceeeeccccchhhccCCCCceee
Confidence 77888786666677777787765
No 283
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.95 E-value=8.5e-09 Score=100.84 Aligned_cols=240 Identities=17% Similarity=0.218 Sum_probs=149.4
Q ss_pred cEEEEEEecCC--ceEEEeecCCeEEEeeccCCcc-------------CC-CCceeeecCccccccCccc-cccc---cc
Q 001343 766 KVVRLLYTNSA--VGLLALGSNGVQKLWKWHRNEQ-------------NP-SGKATASAVPQHWLPSSGL-LMAN---DV 825 (1096)
Q Consensus 766 ~i~~l~~s~~~--~~l~~~~~dg~v~vw~~~~~~~-------------~~-~g~~~~~~~i~~w~~~~~~-~~~~---~~ 825 (1096)
.|..+.|..++ ..++.++.|.++++|.+..... +| .|.......+++-.+..-. .+.. ..
T Consensus 87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rv 166 (460)
T COG5170 87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRV 166 (460)
T ss_pred HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecccee
Confidence 55566665443 4578888999999999865521 11 1111111122211111110 0000 01
Q ss_pred cCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEccc--ce-EEEeecCCC-----CCeeEEEEecCCCcEEEEeeCCCeE
Q 001343 826 AGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMT--FK-VMTTFMSPP-----PASTFLAFHPQDNNIIAIGTEDSTI 897 (1096)
Q Consensus 826 ~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~--~~-~~~~~~~h~-----~~i~~l~~s~~d~~~l~s~~~dg~i 897 (1096)
...+|...|.++.|..|.+.+.++.+=+|-+|++.- +. .+--++.|. ..|++..|+|...+.+...+..|.|
T Consensus 167 yaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I 246 (460)
T COG5170 167 YANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI 246 (460)
T ss_pred ccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence 113488889999999999999999999999999742 21 233344554 3578899999777788888999999
Q ss_pred EEEeeccceeeeeeccccccc-cceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEcccc-eeccccccCC---
Q 001343 898 HIYNVRVDELCVWSIDTWEKR-KSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKM-ERIRQWTPQD--- 972 (1096)
Q Consensus 898 ~iw~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~-~~~~~~~~~~--- 972 (1096)
++-|++...+|.-.....+.. .+.....+.+-. +.|..++|++.|+++++-.--++.|||+.-. .++.++.-|.
T Consensus 247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eiv-sSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~ 325 (460)
T COG5170 247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIV-SSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLM 325 (460)
T ss_pred EehhhhhhhhccCchhhhhhccCcccchhHHHHh-hhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHH
Confidence 999999776554222111110 000011111111 5889999999999999977789999999744 3444432110
Q ss_pred ------CCCCCc---eEEEEeeCCcEEEEEecCCcEEEEecCC
Q 001343 973 ------ALSAPI---SCAVYSCNSQLVFATFCDGNIGVFDADT 1006 (1096)
Q Consensus 973 ------~~~~~i---~~l~~s~dg~~la~~~~dg~i~vwd~~~ 1006 (1096)
...+.| ..+.||.|.+.+.+|+.....-+|-.++
T Consensus 326 ~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 326 DELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred HHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 013333 3478899999999999988888887543
No 284
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=3.5e-07 Score=101.49 Aligned_cols=335 Identities=13% Similarity=0.104 Sum_probs=184.6
Q ss_pred EEEEEEcCCCCEEEEEEC----CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cC
Q 001343 409 VSRVAWSPDGNYVGVAFT----KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1096)
Q Consensus 409 V~~l~~spd~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~ 483 (1096)
-+-.+|+|...++|+++- .|+|-||- ++|++-+.. +.+-| +++++|+|..- +|+.|=.-|.+.+|. .+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~h---atSLCWHpe~~--vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPVH---ATSLCWHPEEF--VLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-cccee---hhhhccChHHH--HHhhccccceeEEEecCC
Confidence 344689999999998864 47888884 556543321 22233 56799999877 888898899999999 44
Q ss_pred CceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC--C--CC--cEEEEEEcCCCCE-----
Q 001343 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--P--GH--WCTTMLYSADGSR----- 552 (1096)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~--~~--~i~~l~~s~~~~~----- 552 (1096)
.+.-.....|..+|..+.|++ +|..++++..-|.+.+|..+..+....... | +. ...+...++++.-
T Consensus 91 ~e~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la 168 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA 168 (1416)
T ss_pred ceeeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence 444444567999999999977 668999999999999998774433322111 1 11 2334444565432
Q ss_pred -EEEEeeccCCCCeEE-EEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCC
Q 001343 553 -LFSCGTSKDGDSFLV-EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1096)
Q Consensus 553 -l~~~~~~~~~~~~i~-iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1096)
.++.+. +..+- .++.+.....+.. . -.-.|+|..++.++.+|+|+-.|- .|..........
T Consensus 169 KaaVtgD----e~alD~~fnwk~~~a~rs~-~--------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS--- 231 (1416)
T KOG3617|consen 169 KAAVTGD----ESALDEPFNWKESLAERSD-E--------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDS--- 231 (1416)
T ss_pred hhhccCc----hhhhcccccCccchhhccc-c--------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccc---
Confidence 122221 21111 2221110000000 0 112467888999999999988774 444444443322
Q ss_pred CccEEEEeCCCCEEEEEECCCcEEEEEc-CCCccc---cccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEecc
Q 001343 631 NLPRLRFSKEGNLLAVTTADNGFKILAN-AIGLRS---LRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1096)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~-~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~ 706 (1096)
-..+-|.+....+++.-.+-.+.++-. .+|... ...+.+....
T Consensus 232 -~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~Gg-------------------------------- 278 (1416)
T KOG3617|consen 232 -EVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGG-------------------------------- 278 (1416)
T ss_pred -hHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCC--------------------------------
Confidence 133455554444444444333333322 222100 0000000000
Q ss_pred CCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCC
Q 001343 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG 786 (1096)
Q Consensus 707 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg 786 (1096)
..|. ++.+...|.++ . ..-.-+. ....+.|++++..+..+.++...|
T Consensus 279 -----------------rqGg-iA~sEssGvLr---~------~eKyg~e------~ge~~~c~cY~~~~~~l~agt~~g 325 (1416)
T KOG3617|consen 279 -----------------RQGG-IACSESSGVLR---K------SEKYGLE------LGEGILCMCYGEKEIRLWAGTKEG 325 (1416)
T ss_pred -----------------ccCc-ccccccccccc---C------Ccchhhh------cCCceEEEEEeccceEEEecccCC
Confidence 0000 12222222111 0 0001111 456799999999999899999999
Q ss_pred eEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec
Q 001343 787 VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT 850 (1096)
Q Consensus 787 ~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~ 850 (1096)
.+.+|.-....+.+ ...+..|.+.+... ..+.|+.+.|+|-...++.-+
T Consensus 326 nv~~w~~v~~~f~g------~p~~d~w~l~~~~e---------~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 326 NVTIWLDVNKGFQG------DPTIDVWTLNGKRE---------SLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred cEEEeeecCccccC------CCCcceEEecCchh---------hccceEEEEeccccchhhhhh
Confidence 99999743332222 12456676554332 346788888888655555444
No 285
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.92 E-value=1e-06 Score=109.98 Aligned_cols=245 Identities=15% Similarity=0.131 Sum_probs=160.2
Q ss_pred EEEEEcCC-CCEEEEEECCCeEEEEEccCCCccccceee-----------cccccCEEEEEEecCCCcEEEEEEeCCCcE
Q 001343 410 SRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQI-----------DAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 410 ~~l~~spd-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l-----------~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i 477 (1096)
..++++++ ++.+++-+.++.|++||..+. .+...... .++-.....+++.+++.. ++++-...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~-LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNL-LYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCE-EEEEeCCCceE
Confidence 46889875 556666667789999998653 22211000 001123588999998873 33444456789
Q ss_pred EEEEcCCceEEEeeCC-----------------CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC---
Q 001343 478 KVWELSGRKLFNFEGH-----------------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--- 537 (1096)
Q Consensus 478 ~iwd~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--- 537 (1096)
+++|..+..+.++.+- -..-+.+++++. ++.++++.+.++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~-~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV-NEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYE 726 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC-CCeEEEEECCCCeEEEEECCCCeEEE-EecCCcc
Confidence 9999544555555321 012356788663 34677777888999999987654321 1111
Q ss_pred ------------CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc------------C--------c
Q 001343 538 ------------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF------------R--------K 585 (1096)
Q Consensus 538 ------------~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~------------~--------~ 585 (1096)
......++++|+++.|+++.. +++.|++||+.++.......+. . -
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs---~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADS---ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 124567999999997776543 3789999999876532111000 0 0
Q ss_pred cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC-----------CCCCCccEEEEeCCCCEEEEEECCCcEE
Q 001343 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-----------GGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1096)
Q Consensus 586 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1096)
.....++++++|+.+++-+.++.|++||..++......... ........++++++|+++++-+.++.|+
T Consensus 804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 02346889999998888889999999999887665433211 1112567899999999999888999999
Q ss_pred EEEcCCC
Q 001343 655 ILANAIG 661 (1096)
Q Consensus 655 iwd~~~~ 661 (1096)
+||+.++
T Consensus 884 vid~~~~ 890 (1057)
T PLN02919 884 YLDLNKG 890 (1057)
T ss_pred EEECCCC
Confidence 9999876
No 286
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.89 E-value=1.4e-06 Score=108.66 Aligned_cols=257 Identities=14% Similarity=0.137 Sum_probs=158.6
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC-
Q 001343 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT- 426 (1096)
Q Consensus 348 ~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~- 426 (1096)
..+++++++..++++-+..+.|.+||.. +..+.... ....... .....-..+-.....|+++++++.|+++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig----~~g~~G~-~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIG----STGEEGL-RDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEc----cCCCcCC-CCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 4678988644477777788999999975 44332100 0000000 000000112234678999999887766654
Q ss_pred CCeEEEEEccCCCcccccee-------eccc-------ccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEee
Q 001343 427 KHLIQLYSYAGSNDLRQHSQ-------IDAH-------VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1096)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~-------l~~h-------~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~ 491 (1096)
++.|+++|..++.. ..+.. ..+. -...+.++|+|++.. ++++.+.++.|++|| .++. +..+.
T Consensus 645 n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~-LyVad~~~~~I~v~d~~~g~-v~~~~ 721 (1057)
T PLN02919 645 NHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK-VYIAMAGQHQIWEYNISDGV-TRVFS 721 (1057)
T ss_pred CceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe-EEEEECCCCeEEEEECCCCe-EEEEe
Confidence 56899999876532 21100 0000 123468999995443 677888899999999 5543 33332
Q ss_pred CC---------------CCCeEEEEeeecCCCc-EEEEEECCCeEEEEEcCCCCeeeEEeC-------------C-----
Q 001343 492 GH---------------EAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRVDYDA-------------P----- 537 (1096)
Q Consensus 492 ~~---------------~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------~----- 537 (1096)
+. -.....+++++ ++. ++++.+.++.|++||++++.......+ .
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavsp--dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSP--DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS 799 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeC--CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchh
Confidence 21 11245678866 445 556667789999999987653321100 0
Q ss_pred ---CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc------------CccceEEEEEeCCCCEEEE
Q 001343 538 ---GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF------------RKKSNGVVQFDTTQNHFLA 602 (1096)
Q Consensus 538 ---~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~ 602 (1096)
......++++++|+.+++-.. ++.|++||..++......... .-.....++++++|+.+++
T Consensus 800 ~~~l~~P~Gvavd~dG~LYVADs~----N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 800 EVLLQHPLGVLCAKDGQIYVADSY----NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred hhhccCCceeeEeCCCcEEEEECC----CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 012468899999987666654 889999999887665432110 0013556899999998888
Q ss_pred EEcCCeEEEEeCCCCeE
Q 001343 603 VGEDSQIKFWDMDNVNI 619 (1096)
Q Consensus 603 ~~~dg~i~iwd~~~~~~ 619 (1096)
-+.++.|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88999999999988765
No 287
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.86 E-value=3.4e-08 Score=107.77 Aligned_cols=265 Identities=17% Similarity=0.300 Sum_probs=178.3
Q ss_pred eeecCCCCcceEEeecCCC--ceEEEEEcCCCC-cEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccc
Q 001343 327 TWSLDDLPRTVAVSLHQGS--TVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~--~V~~v~fsp~g~-~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1096)
+.++++ |...-+-++|-. .|..+.|||... -+-++......-.||++....... + .-++.
T Consensus 49 i~dld~-p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~a---I-------------ef~lh 111 (1081)
T KOG0309|consen 49 IIDLDD-PFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNA---I-------------EFVLH 111 (1081)
T ss_pred EEeccC-CCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccc---e-------------EEEEe
Confidence 445544 444455555544 588889988643 145555667778899986543221 1 12478
Q ss_pred cCCCCEEEEEEcCC-CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-
Q 001343 404 DVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1096)
Q Consensus 404 ~h~~~V~~l~~spd-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd- 481 (1096)
||+..|+.+.|.|. -..||+++.|..+..||+.+.... +..+..-......++|+.... .+.+.+..+.|++||
T Consensus 112 ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p--~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i~vwd~ 187 (1081)
T KOG0309|consen 112 GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP--FYSTSSWRSAASQVKWNYKDP--NVLASSHGNDIFVWDL 187 (1081)
T ss_pred cCccceeccccCCCCCcceeeccccccceeeeccCCCcc--eeeeecccccCceeeecccCc--chhhhccCCceEEEec
Confidence 99999999999995 558899999999999999875432 223444556678899998776 566677788999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe-CCCCcEEEEEEcCCCCEEEEEeec
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
..+.++..+++|...|+.+.|..... ..+.+.+.||+|++||.+......... ....+|..-.+.|-|.-...--.
T Consensus 188 r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~- 265 (1081)
T KOG0309|consen 188 RKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPM- 265 (1081)
T ss_pred cCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccc-
Confidence 56678899999999999998865433 468899999999999998655443322 23346666666665543332111
Q ss_pred cCCCCeEEE---------EeCCC-CeeeEEEcCcCccceEEEEEeC----------CCCEEEEEEcCCeEEEEeCCC
Q 001343 560 KDGDSFLVE---------WNESE-GTIKRTYAGFRKKSNGVVQFDT----------TQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 560 ~~~~~~i~i---------wd~~~-~~~~~~~~~~~~~~i~~~~~~~----------~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
.|+..+.+ |+..+ .+.+.+|.||.+ .|....|-. ..-.|++-+.|..+++|-+.+
T Consensus 266 -~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 266 -VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred -cCCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 01223333 44333 467899999987 443222221 123689999999999998864
No 288
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.84 E-value=4e-08 Score=107.27 Aligned_cols=293 Identities=13% Similarity=0.179 Sum_probs=189.0
Q ss_pred EeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccC--CCCEEEEEEcC
Q 001343 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV--PISVSRVAWSP 416 (1096)
Q Consensus 339 ~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~sp 416 (1096)
..+.-.+++.++..+|.|+- +|.++.-|. .|-|+...-... ..-.| .-.|..+.|||
T Consensus 19 lsl~v~~~~~a~si~p~grd-i~lAsr~gl-~i~dld~p~~pp-------------------r~l~h~tpw~vad~qws~ 77 (1081)
T KOG0309|consen 19 LSLKVDGGFNAVSINPSGRD-IVLASRQGL-YIIDLDDPFTPP-------------------RWLHHITPWQVADVQWSP 77 (1081)
T ss_pred eEEEecCcccceeeccccch-hhhhhhcCe-EEEeccCCCCCc-------------------eeeeccCcchhcceeccc
Confidence 34455678999999999995 777765554 344554322110 01112 22466788887
Q ss_pred CC--CEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c-CCceEEEeeC
Q 001343 417 DG--NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFNFEG 492 (1096)
Q Consensus 417 d~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~-~~~~~~~~~~ 492 (1096)
.. .+-++......-.+|++.....-..-..+.||...|+.+.|.|.... ++++++.|..+..|| . -..++..+..
T Consensus 78 h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~ 156 (1081)
T KOG0309|consen 78 HPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSS 156 (1081)
T ss_pred CCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeec
Confidence 53 34444444556678998755444433468899999999999998877 899999999999999 3 4456777766
Q ss_pred CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCee-eEEeCCCCcEEEEEEcCC-CCEEEEEeeccCCCCeEEEEe
Q 001343 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-VDYDAPGHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVEWN 570 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~s~~-~~~l~~~~~~~~~~~~i~iwd 570 (1096)
-...-..+.|+.. ++ .+++.+..+.|++||.+.+... ..++.+...|+.+.|..- ...+.+++. +++|+.||
T Consensus 157 w~s~asqVkwnyk-~p-~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~----d~tvkfw~ 230 (1081)
T KOG0309|consen 157 WRSAASQVKWNYK-DP-NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN----DGTVKFWD 230 (1081)
T ss_pred ccccCceeeeccc-Cc-chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCC----CCceeeec
Confidence 6667778888764 33 4556667788999999976654 466777778888888653 234555554 99999999
Q ss_pred CCCCeeeEEEcCcCccceEEEEEeCCCCEEEEE--EcCCeEEE---------EeCCC-CeEEEEeecCCCCCCccEEEEe
Q 001343 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV--GEDSQIKF---------WDMDN-VNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 571 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i---------wd~~~-~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
.......-......+.++..-++-|-|.-.+.- -.+..+.+ |+..+ .+.+..+.+|.. .|...-|-
T Consensus 231 y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlWR 308 (1081)
T KOG0309|consen 231 YSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD--VVLEFLWR 308 (1081)
T ss_pred ccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcch--HHHHHhhh
Confidence 875433222222223355555666655433321 11223333 33332 356778877765 55555443
Q ss_pred CC----------CCEEEEEECCCcEEEEEcCCC
Q 001343 639 KE----------GNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 639 ~~----------~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.. .-.|++-+.|..+++|-+.+.
T Consensus 309 ~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 309 KRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred hcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 32 247999999999999998654
No 289
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.84 E-value=1.4e-06 Score=86.03 Aligned_cols=221 Identities=17% Similarity=0.183 Sum_probs=141.3
Q ss_pred eeeecCCCcEEEEecCCeEEEEEcccc--eEEEee---cCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeee
Q 001343 836 CIALSKNDSYVMSATGGKISLFNMMTF--KVMTTF---MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVW 910 (1096)
Q Consensus 836 ~l~~s~dg~~la~~~dg~v~iwd~~~~--~~~~~~---~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w 910 (1096)
.++.+.||++||...|..|.|-..++. ..+++. +.....=+.++||| |+.+||.+...|+|+++|+....+.
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf-- 78 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELF-- 78 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeE--
Confidence 367889999999999999998876542 222322 23334566899999 9999999999999999999876511
Q ss_pred eccccccccceeeecCCCCCCCCCceEEEecCC-------cEEEEEecceEEEEEcccc-----eeccccccCCCCCCCc
Q 001343 911 SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ-------VRMLVVHETQLAIYDASKM-----ERIRQWTPQDALSAPI 978 (1096)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg-------~~l~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~i 978 (1096)
.+.. .....+.....|..+.|-+-. .+|+...+|.++-|-+..+ +....+.-...+...|
T Consensus 79 ~I~p--------~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi 150 (282)
T PF15492_consen 79 VIPP--------AMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGI 150 (282)
T ss_pred EcCc--------ccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCce
Confidence 1111 001111111356666665432 3445578888887776432 2222222211137889
Q ss_pred eEEEEeeCCcEEEEEec----C-------CcEEEEecCCCceeEEEcccc---------------ccCCCc----cCCCc
Q 001343 979 SCAVYSCNSQLVFATFC----D-------GNIGVFDADTLRLRCYIAPST---------------YLSPSV----LNGSQ 1028 (1096)
Q Consensus 979 ~~l~~s~dg~~la~~~~----d-------g~i~vwd~~~~~~~~~~~~~~---------------~~~~~~----~~h~~ 1028 (1096)
.++.|.|.-++|++|+. | .-+..|.+-++...+...... ..+... ..-..
T Consensus 151 ~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d 230 (282)
T PF15492_consen 151 NSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQD 230 (282)
T ss_pred eEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCC
Confidence 99999999998887762 1 136678876655332211000 000000 01245
Q ss_pred cccceEEEecCCCCceEEEEeeCCcEEEEccCCCC--CccccCC
Q 001343 1029 TVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE--GKWGVSP 1070 (1096)
Q Consensus 1029 ~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~--~~~~~~~ 1070 (1096)
.|+ -|..|| ||..||+...+|.|.+|++.+=. ++|..+.
T Consensus 231 ~i~--kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 231 GIF--KMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred ceE--EEEECC-CCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 677 489999 99999999999999999998854 7787753
No 290
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.81 E-value=3.6e-09 Score=117.28 Aligned_cols=217 Identities=15% Similarity=0.228 Sum_probs=162.5
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC-cEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-LIKV 479 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~-~i~i 479 (1096)
.+..|+...+|++||-+.+.|++|+..|.|+++++.+|.... ...+|..+|+-+.=+.||.. .|.+++... -..+
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHH
Confidence 478899999999999999999999999999999999998777 57799999999999999984 333333333 5789
Q ss_pred EE--cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC----CCcEEEEEEcCCCCEE
Q 001343 480 WE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----GHWCTTMLYSADGSRL 553 (1096)
Q Consensus 480 wd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~~~~l 553 (1096)
|+ ..+...++|.+ -.++.|+.. .+.-+.|+.-....+||+++.....++-.. ...-+...|+|+.+.+
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred hccccccCccccccc----cceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 99 56667766654 345666543 234445555567889999998776653211 1133678899999888
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCcc
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1096)
+- +|. +||.+..+.++.|..... ...-.|+|+|..++.-++ |||+++.+.++....... .
T Consensus 1246 ln-------dGv--LWDvR~~~aIh~FD~ft~--~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq----c 1305 (1516)
T KOG1832|consen 1246 LN-------DGV--LWDVRIPEAIHRFDQFTD--YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ----C 1305 (1516)
T ss_pred ee-------Cce--eeeeccHHHHhhhhhhee--cccccccCCCceEEeech-----hhhhHHHHHHhcCccccc----e
Confidence 75 554 599998888888776543 223568999999998876 899999998887765543 5
Q ss_pred EEEEeCCCCEEEEE
Q 001343 634 RLRFSKEGNLLAVT 647 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~ 647 (1096)
.+.|+..|..++..
T Consensus 1306 ~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYAM 1319 (1516)
T ss_pred EEEeccCccchhhh
Confidence 78888888776543
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.81 E-value=4.6e-06 Score=82.46 Aligned_cols=231 Identities=12% Similarity=0.158 Sum_probs=136.7
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEccCC--CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEE
Q 001343 412 VAWSPDGNYVGVAFTKHLIQLYSYAGS--NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN 489 (1096)
Q Consensus 412 l~~spd~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~ 489 (1096)
++.+.||+.||+- .|..|.|=..+.. ..+.+...-+...-.-+.++|+||+. +||.+...|+|+++|..|..+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t--lLa~a~S~G~i~vfdl~g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT--LLAYAESTGTIRVFDLMGSELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc--EEEEEcCCCeEEEEecccceeEE
Confidence 5678899999876 4567766554432 11121111222233457899999999 89999999999999977777666
Q ss_pred eeCC-------CCCeEEEEeeecCC----CcEEEEEECCCeEEEEEcCCC-----CeeeEEeC---CCCcEEEEEEcCCC
Q 001343 490 FEGH-------EAPVYSICPHHKEN----IQFIFSTAIDGKIKAWLYDTM-----GSRVDYDA---PGHWCTTMLYSADG 550 (1096)
Q Consensus 490 ~~~~-------~~~v~~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~---~~~~i~~l~~s~~~ 550 (1096)
+..- ...|..+.|..... ...|++-..+|.++-|-+..+ +....+.. ....|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 5432 24566666654321 235777888888888875321 22223332 35589999999999
Q ss_pred CEEEEEeeccCCCC-------eEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001343 551 SRLFSCGTSKDGDS-------FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (1096)
Q Consensus 551 ~~l~~~~~~~~~~~-------~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1096)
+.|+++|.....++ -+..|.+-++.+-.. .....+...-.... +..+|.+-+.......
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk-----------~v~~~~~~~~~~~~---~~~~~~~~~~~~fs~~ 225 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK-----------QVTSSEDDITASSK---RRGLLRIPSFKFFSRQ 225 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCcEE-----------EccccCcccccccc---ccceeeccceeeeecc
Confidence 99998886433221 123333222211110 10111111111111 1233433332222111
Q ss_pred ecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 624 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
......|..|..||||..||+...+|.|.+|++.+-
T Consensus 226 --~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 226 --GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred --ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 112347999999999999999999999999999765
No 292
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.81 E-value=5.1e-08 Score=99.86 Aligned_cols=164 Identities=18% Similarity=0.177 Sum_probs=115.1
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE-
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA- 424 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~- 424 (1096)
.+..+.++|.++ ++|++..+....++++..... ..+.++... + ...-+++.|..+...+.++
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~~---------v---~~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVSC---------V---PKRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEee---------c---ccCcceeeeeeccceEEEEe
Confidence 456677888888 799988888877777765433 122222110 1 1123344444444544444
Q ss_pred --ECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe-eCCCCCeEEE
Q 001343 425 --FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EGHEAPVYSI 500 (1096)
Q Consensus 425 --~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-~~~~~~v~~~ 500 (1096)
+....+.+|+...+.+. .+-||-.-+++++|+||++ +|+++..|..|++-. ..-..+..| -||+..|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 44456667766654433 3568999999999999999 999999999999988 555555554 5799999999
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 535 (1096)
+..+ +..|+++|.|+++++||+.+++.+..+.
T Consensus 201 sl~~---~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLTD---NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eecc---CceeeecCCCCcEEEEecccCCcccccc
Confidence 9854 3578999999999999999988775443
No 293
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=2.6e-06 Score=95.44 Aligned_cols=214 Identities=13% Similarity=-0.017 Sum_probs=128.7
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEE-EeC--CCeEEEEecCCCCeeecccceeecccccCccccccccc
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLV-GSS--NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llas-g~~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1096)
+|-+|.-.......+.. +.+..-.|||||+++++. ... +..|.++|+.+++... +.
T Consensus 171 l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt 229 (419)
T PRK04043 171 IVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IA 229 (419)
T ss_pred EEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------Ee
Confidence 77766533333323333 378899999999853443 322 3579999998887543 22
Q ss_pred cCCCCEEEEEEcCCCCEEEEEE-C--CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC--cEE
Q 001343 404 DVPISVSRVAWSPDGNYVGVAF-T--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIK 478 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~~-~--dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~--~i~ 478 (1096)
...+.+....|||||+.|+... . +..|.++|+.+++..+ +..+.+......|+|||+.++ ++....+ .|.
T Consensus 230 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~----LT~~~~~d~~p~~SPDG~~I~-F~Sdr~g~~~Iy 304 (419)
T PRK04043 230 SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ----ITNYPGIDVNGNFVEDDKRIV-FVSDRLGYPNIF 304 (419)
T ss_pred cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE----cccCCCccCccEECCCCCEEE-EEECCCCCceEE
Confidence 3445567788999999877543 2 3568888887765322 333443344568999999533 3332333 577
Q ss_pred EEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC---------CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcC
Q 001343 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA 548 (1096)
Q Consensus 479 iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~ 548 (1096)
+.| ..|+. ..+...... ...|+| +|+.|+..+.. ..|.+.|++++.... +... .......|+|
T Consensus 305 ~~dl~~g~~-~rlt~~g~~--~~~~SP--DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SP 377 (419)
T PRK04043 305 MKKLNSGSV-EQVVFHGKN--NSSVST--YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSS 377 (419)
T ss_pred EEECCCCCe-EeCccCCCc--CceECC--CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECC
Confidence 777 44444 333211111 236765 66777666543 257777877665433 3222 2334688999
Q ss_pred CCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 549 DGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
||+.++..... .+...+.+.++...
T Consensus 378 DG~~I~f~~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 378 DGGSIMFIKYL-GNQSALGIIRLNYN 402 (419)
T ss_pred CCCEEEEEEcc-CCcEEEEEEecCCC
Confidence 99998877643 33455777777543
No 294
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.78 E-value=0.001 Score=76.91 Aligned_cols=607 Identities=12% Similarity=0.081 Sum_probs=289.5
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEecC-CCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE
Q 001343 347 VISMDFHPSHQTLLLVGSSNGEITLWELA-MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 347 V~~v~fsp~g~~llasg~~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~ 425 (1096)
+..-..+++|.+ ...|..+|.+...-+. +++......+++. .-+..+-..|+..-++| .|.+|+
T Consensus 260 ~~~~~v~~~~~~-yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve-------------~lge~siassi~~L~ng-~lFvGS 324 (1096)
T KOG1897|consen 260 VCYGRVDLQGSR-YLLGDEDGMLFKLLLSHTGETVSGLDLKVE-------------YLGETSIASSINYLDNG-VLFVGS 324 (1096)
T ss_pred EEcccccCCccE-EEEecCCCcEEEEEeecccccccceEEEEE-------------ecCCcchhhhhhcccCc-eEEEec
Confidence 334455677775 5567788877766555 5554322111211 22344455566665555 677788
Q ss_pred CCCeEEEEEccCCCccc----cceeecccccCEEEEEEecCC---CcEEEEEEe---CCCcEEEEE--cCCceE--EEee
Q 001343 426 TKHLIQLYSYAGSNDLR----QHSQIDAHVGAVNDLAFAYPN---KLLCVVTCG---DDKLIKVWE--LSGRKL--FNFE 491 (1096)
Q Consensus 426 ~dg~i~vwd~~~~~~~~----~~~~l~~h~~~v~~l~~s~d~---~~~~l~s~s---~d~~i~iwd--~~~~~~--~~~~ 491 (1096)
.-|.=.+-.+.+-.... ...++ ..-++|.+++..... +. .++||+ .||++++.. ..=..+ ..+.
T Consensus 325 ~~gdSqLi~L~~e~d~gsy~~ilet~-~NLgPI~Dm~Vvd~d~q~q~-qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~ 402 (1096)
T KOG1897|consen 325 RFGDSQLIKLNTEPDVGSYVVILETF-VNLGPIVDMCVVDLDRQGQG-QIVTCSGAFKDGSLRIIRNGIGIDELASIDLP 402 (1096)
T ss_pred cCCceeeEEccccCCCCchhhhhhhc-ccccceeeEEEEeccccCCc-eEEEEeCCCCCCcEEEEecccccceeeEeecC
Confidence 77665666555432221 00011 244688888876533 33 566665 589999986 222222 3344
Q ss_pred CCCCCeEEEE--eeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEc-CCCCEEEEEeeccCCCCeEEE
Q 001343 492 GHEAPVYSIC--PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 492 ~~~~~v~~~~--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-~~~~~l~~~~~~~~~~~~i~i 568 (1096)
| -..++.+. +.+..+. +|+.+-.+.+ ++..+...-......+-......+..| -.|+.++-.. ...|++
T Consensus 403 G-ikg~w~lk~~v~~~~d~-ylvlsf~~eT-rvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-----s~~iRl 474 (1096)
T KOG1897|consen 403 G-IKGMWSLKSMVDENYDN-YLVLSFISET-RVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-----SNSIRL 474 (1096)
T ss_pred C-ccceeEeeccccccCCc-EEEEEeccce-EEEEEccceEEeccccccccCceEEEEccCCceEEEEe-----cccEEE
Confidence 4 33466666 5444443 5555444333 344443221111111111122222222 2333333222 446777
Q ss_pred EeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCC------C
Q 001343 569 WNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG------N 642 (1096)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~------~ 642 (1096)
++-. ..+.......+ ++....+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|-| +
T Consensus 475 ~ss~--~~~~~W~~p~~--~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~ 549 (1096)
T KOG1897|consen 475 VSSA--GLRSEWRPPGK--ITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSR 549 (1096)
T ss_pred Ecch--hhhhcccCCCc--eEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcce
Confidence 6644 22333333332 3333344455577777777778777877665 3333333334478999999842 3
Q ss_pred EEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCcc
Q 001343 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTS 722 (1096)
Q Consensus 643 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1096)
++++|..+..+.+.-......... ......+.....+--..+-.
T Consensus 550 ~~aVG~Ws~~~~~l~~~pd~~~~~-~~~l~~~~iPRSIl~~~~e~----------------------------------- 593 (1096)
T KOG1897|consen 550 LLAVGLWSDISMILTFLPDLILIT-HEQLSGEIIPRSILLTTFEG----------------------------------- 593 (1096)
T ss_pred EEEEEeecceEEEEEECCCcceee-eeccCCCccchheeeEEeec-----------------------------------
Confidence 788887766555443222211111 11011111100111112222
Q ss_pred CCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEee---------c
Q 001343 723 RSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK---------W 793 (1096)
Q Consensus 723 s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~---------~ 793 (1096)
|..+|..+..||.+.-|.+... +++....+ .......++.--.|+..++.-+.+.+|.-..+|. +
T Consensus 594 --d~~yLlvalgdG~l~~fv~d~~--tg~lsd~K--k~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spl 667 (1096)
T KOG1897|consen 594 --DIHYLLVALGDGALLYFVLDIN--TGQLSDRK--KVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPL 667 (1096)
T ss_pred --cceEEEEEcCCceEEEEEEEcc--cceEcccc--ccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEecc
Confidence 2334445555566555544421 01000000 0000122233333333222222222222222222 1
Q ss_pred cCCc------c----CCCCceeeec-CccccccCccccc-cccccCCCcCCCeeeeeecCCCcEEEEecC----------
Q 001343 794 HRNE------Q----NPSGKATASA-VPQHWLPSSGLLM-ANDVAGVNLEEAVPCIALSKNDSYVMSATG---------- 851 (1096)
Q Consensus 794 ~~~~------~----~~~g~~~~~~-~i~~w~~~~~~~~-~~~~~g~~~~~~v~~l~~s~dg~~la~~~d---------- 851 (1096)
...+ + -+++-..+.. .+++..+..-..+ ..+++ -......+++.+...++++.++
T Consensus 668 s~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp---l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ 744 (1096)
T KOG1897|consen 668 SLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVP---LGESPRRICYQESSLTFGVLSNRIESSAEYYG 744 (1096)
T ss_pred chHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeec---CCCChhheEecccceEEEEEecccccchhhcC
Confidence 1110 0 0111111111 1111111110000 00122 2345556677664444444331
Q ss_pred -----CeEEEEEcccceEEEeecCC-C---CCeeEEEEecCCCcEEEEee----------CCCeEEEEeeccceeeeeec
Q 001343 852 -----GKISLFNMMTFKVMTTFMSP-P---PASTFLAFHPQDNNIIAIGT----------EDSTIHIYNVRVDELCVWSI 912 (1096)
Q Consensus 852 -----g~v~iwd~~~~~~~~~~~~h-~---~~i~~l~~s~~d~~~l~s~~----------~dg~i~iw~~~~~~~~~w~~ 912 (1096)
..++++|-++.+.+...+-. . -.+.++.|..|.+.++++|+ ..|.|.++.+....
T Consensus 745 ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~------ 818 (1096)
T KOG1897|consen 745 EEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN------ 818 (1096)
T ss_pred CcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC------
Confidence 12778887777665443211 1 23555668883377888875 35777777776632
Q ss_pred cccccccceeeecCCCCCC-CCCceEEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEE
Q 001343 913 DTWEKRKSVTIHIPAGKTP-TGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVF 991 (1096)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~-~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la 991 (1096)
.++....+.. +.+. ++-.-...++++-...|++|+..+.+.++.-..+ ..++..+...-.|..++
T Consensus 819 ---------~L~~v~e~~v~Gav~--aL~~fngkllA~In~~vrLye~t~~~eLr~e~~~---~~~~~aL~l~v~gdeI~ 884 (1096)
T KOG1897|consen 819 ---------SLELVAETVVKGAVY--ALVEFNGKLLAGINQSVRLYEWTTERELRIECNI---SNPIIALDLQVKGDEIA 884 (1096)
T ss_pred ---------ceeeeeeeeecccee--ehhhhCCeEEEecCcEEEEEEccccceehhhhcc---cCCeEEEEEEecCcEEE
Confidence 1122111111 1222 2222233444456678999999988766665554 77889999999999999
Q ss_pred EEecCCcEEEEecCCCc--eeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCC
Q 001343 992 ATFCDGNIGVFDADTLR--LRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1061 (1096)
Q Consensus 992 ~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~ 1061 (1096)
+|..=+++.+......+ +...-+ .- |..+++ ++.+- +++.++-+..+|.+++-...+
T Consensus 885 VgDlm~Sitll~y~~~eg~f~evAr-D~--------~p~Wmt--aveil--~~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 885 VGDLMRSITLLQYKGDEGNFEEVAR-DY--------NPNWMT--AVEIL--DDDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred EeeccceEEEEEEeccCCceEEeeh-hh--------Ccccee--eEEEe--cCceEEeecccccEEEEEecC
Confidence 99988887775554444 443322 11 455677 36665 466677778888888877553
No 295
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.76 E-value=2.2e-07 Score=91.15 Aligned_cols=247 Identities=15% Similarity=0.231 Sum_probs=162.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCC--ccccceeecccc------------cCEEEEEEecCCCcEEEEE
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHV------------GAVNDLAFAYPNKLLCVVT 470 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~l~~h~------------~~v~~l~~s~d~~~~~l~s 470 (1096)
....|+++.|...|.||++|...|.|.+|.-+... ..+-+.++++|. ..|..+.|..++....++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34579999999999999999988999999765432 122222455554 4678888887766556777
Q ss_pred EeCCCcEEEEE-cCC-------------------ceE-----------------------EEe-eCCCCCeEEEEeeecC
Q 001343 471 CGDDKLIKVWE-LSG-------------------RKL-----------------------FNF-EGHEAPVYSICPHHKE 506 (1096)
Q Consensus 471 ~s~d~~i~iwd-~~~-------------------~~~-----------------------~~~-~~~~~~v~~~~~~~~~ 506 (1096)
.+.|++|++|. ... .++ +.+ ..|.-.|.+++++.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-- 182 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-- 182 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC--
Confidence 88899999998 222 000 000 34555677777754
Q ss_pred CCcEEEEEECCCeEEEEEcCCCCeee---EEeCCCC-----cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee-
Q 001343 507 NIQFIFSTAIDGKIKAWLYDTMGSRV---DYDAPGH-----WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK- 577 (1096)
Q Consensus 507 ~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~-----~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~- 577 (1096)
|.+.+++ +.|=.|.+|+++.....+ ....++. .|++..|+|....++.-+. ..|.|++-|++...+-
T Consensus 183 D~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs---SkG~Ikl~DlRq~alcd 258 (460)
T COG5170 183 DKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS---SKGEIKLNDLRQSALCD 258 (460)
T ss_pred chheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec---CCCcEEehhhhhhhhcc
Confidence 4455555 457889999987655433 2233332 5788899997655443332 1889999998732110
Q ss_pred ---E----E--------EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC-CeEEEEeecCCC----------CCC
Q 001343 578 ---R----T--------YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGG----------LPN 631 (1096)
Q Consensus 578 ---~----~--------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~----------~~~ 631 (1096)
+ + +.+.. ..|..+.|+++|+++++-.. -++++||.+. ..++.++..|.. ...
T Consensus 259 n~~klfe~~~D~v~~~ff~eiv-sSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDa 336 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIV-SSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDA 336 (460)
T ss_pred CchhhhhhccCcccchhHHHHh-hhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccc
Confidence 1 1 11111 25677899999999888765 5899999986 456666644321 112
Q ss_pred c---cEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 632 L---PRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 632 v---~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
| ..+.|+.|...+.+|+..+...+|-..
T Consensus 337 ifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 337 IFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeeEEEEecCCcccccccccccceeeeccc
Confidence 2 357888888999999988888887643
No 296
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.72 E-value=1.1e-05 Score=82.85 Aligned_cols=251 Identities=13% Similarity=0.107 Sum_probs=148.2
Q ss_pred EEEEEeCC-CCEEEEEEcCC-eEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEEC-----CCcEEEEEcCCC
Q 001343 589 GVVQFDTT-QNHFLAVGEDS-QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA-----DNGFKILANAIG 661 (1096)
Q Consensus 589 ~~~~~~~~-~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iwd~~~~ 661 (1096)
..++.+|. ...++.+-.-| ...+||..+++....+.......---.-.|++||++|++.-. .|.|-+||...+
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 34677884 44555565555 478999999999887765544223335689999999998754 478999999866
Q ss_pred ccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCC--CCccccCCCCCcc
Q 001343 662 LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMD--KPRTVDDVTDKPK 739 (1096)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~--~~l~s~~~dg~i~ 739 (1096)
.+.+..+..+-...+ .+.+.|||+.||..+..-.+ .||. ..|-....+-.+.
T Consensus 88 ~~ri~E~~s~GIGPH-----el~l~pDG~tLvVANGGI~T---------------------hpd~GR~kLNl~tM~psL~ 141 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPH-----ELLLMPDGETLVVANGGIET---------------------HPDSGRAKLNLDTMQPSLV 141 (305)
T ss_pred cEEEeEecCCCcChh-----hEEEcCCCCEEEEEcCCCcc---------------------CcccCceecChhhcCCceE
Confidence 677777766655434 48899999776544332111 1111 1111122223333
Q ss_pred ceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCe-------EEEeeccCCccCCCCceeeecCccc
Q 001343 740 PWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGV-------QKLWKWHRNEQNPSGKATASAVPQH 812 (1096)
Q Consensus 740 iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~-------v~vw~~~~~~~~~~g~~~~~~~i~~ 812 (1096)
..|..+ .....+..++. ..|...|+.+++.++|..++..-..|. +-+++... .++.
T Consensus 142 ~ld~~s---G~ll~q~~Lp~-~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-------------~~~~ 204 (305)
T PF07433_consen 142 YLDARS---GALLEQVELPP-DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-------------ALRL 204 (305)
T ss_pred EEecCC---CceeeeeecCc-cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-------------ccee
Confidence 332221 12223334422 237788999999999973333322221 11111000 0111
Q ss_pred cccCccccccccccCCCcCCCeeeeeecCCCcEEEEec--CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEE
Q 001343 813 WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890 (1096)
Q Consensus 813 w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~--dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s 890 (1096)
.+...... .. -...+-+|+++++|.++++.+ .|.+.+||..+++.+.... -..+..++-.+ ++ ++++
T Consensus 205 ~~~p~~~~-----~~--l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~-~~-f~~s 273 (305)
T PF07433_consen 205 LPAPEEQW-----RR--LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTD-DG-FLVS 273 (305)
T ss_pred ccCChHHH-----Hh--hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecC-Cc-eEEe
Confidence 11111110 01 346788999999999998887 4889999999999988763 33566777776 55 5555
Q ss_pred eeC
Q 001343 891 GTE 893 (1096)
Q Consensus 891 ~~~ 893 (1096)
.+.
T Consensus 274 sG~ 276 (305)
T PF07433_consen 274 SGQ 276 (305)
T ss_pred CCC
Confidence 544
No 297
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.72 E-value=2.2e-06 Score=82.80 Aligned_cols=227 Identities=12% Similarity=0.013 Sum_probs=145.9
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC-CCEEEEEECCCeEEEEEccC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAG 437 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~~l~s~~~dg~i~vwd~~~ 437 (1096)
+||.|+..|...+|...+.+.... + ...|...|+-+.=..| ..-+..++.|.++++.+++.
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~----~--------------cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~ 147 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLY----Q--------------CDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG 147 (344)
T ss_pred EEEeccccceeeeecccCccccee----e--------------ecccccchhhhhhhcccccceeeccCCcceeEEEEec
Confidence 689999999999999987654321 1 2223333322211112 23466788999999999887
Q ss_pred CCccccceeeccccc--CEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceEEE-e-eCCCCCeEEEEeeecCCCcEE
Q 001343 438 SNDLRQHSQIDAHVG--AVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFN-F-EGHEAPVYSICPHHKENIQFI 511 (1096)
Q Consensus 438 ~~~~~~~~~l~~h~~--~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~-~-~~~~~~v~~~~~~~~~~~~~l 511 (1096)
+..-. ..|.. .+.++.+++|++ ++++.+....|..|. .+++.+.. . ...+..-.+..|+. +...+
T Consensus 148 ~s~~~-----~~h~~~~~~ns~~~snd~~--~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~--~~~~F 218 (344)
T KOG4532|consen 148 DSNKF-----AVHNQNLTQNSLHYSNDPS--WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE--NDLQF 218 (344)
T ss_pred Ccccc-----eeeccccceeeeEEcCCCc--eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc--CcceE
Confidence 54322 22443 388999999999 899999899999998 44443333 2 22233344556643 55789
Q ss_pred EEEECCCeEEEEEcCCCCeee-----EEeCCCCcEEEEEEcCCCCE-EEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc
Q 001343 512 FSTAIDGKIKAWLYDTMGSRV-----DYDAPGHWCTTMLYSADGSR-LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK 585 (1096)
Q Consensus 512 ~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~i~~l~~s~~~~~-l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 585 (1096)
+++..||++.|||++...... ....|++.+..+.|++.|.. |+..+. +-+.+.+.|+++++-.+.+.-..+
T Consensus 219 Av~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~R~~~~~q~I~i~~d 295 (344)
T KOG4532|consen 219 AVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE---HFSRVHVVDTRNYVNHQVIVIPDD 295 (344)
T ss_pred EEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEec---CcceEEEEEcccCceeeEEecCcc
Confidence 999999999999998765543 33457779999999986642 222222 367899999999876655543222
Q ss_pred -------cceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 586 -------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 586 -------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
..+....|+.++..+.+.+++ .+.=|++.+
T Consensus 296 ~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 296 VERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred ccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 235555666666666555543 344555544
No 298
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=9.8e-07 Score=91.40 Aligned_cols=258 Identities=14% Similarity=0.118 Sum_probs=175.6
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE
Q 001343 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1096)
Q Consensus 341 l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 420 (1096)
.-|.+.|+.|.-+-. + ++.+++.||.++.|.-..-.-+. +. .-+..|-+.|.+++.+-+|..
T Consensus 6 ymhrd~i~hv~~tka-~-fiiqASlDGh~KFWkKs~isGvE---------------fV-KhFraHL~~I~sl~~S~dg~L 67 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKA-K-FIIQASLDGHKKFWKKSRISGVE---------------FV-KHFRAHLGVILSLAVSYDGWL 67 (558)
T ss_pred hcccceeeeEeeehh-h-eEEeeecchhhhhcCCCCcccee---------------eh-hhhHHHHHHHHhhhcccccee
Confidence 347778887776654 3 79999999999999854311111 00 115668889999999999999
Q ss_pred EEEEEC-CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCC-ceEEEeeCCCCC
Q 001343 421 VGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSG-RKLFNFEGHEAP 496 (1096)
Q Consensus 421 l~s~~~-dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~-~~~~~~~~~~~~ 496 (1096)
+++++. |..++++|+++-..+.-+ .+.--.+.+.++.-..|...++-++.-.++.+.++| .++ +....-+-|..+
T Consensus 68 ~~Sv~d~Dhs~KvfDvEn~Dminmi-KL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sP 146 (558)
T KOG0882|consen 68 FRSVEDPDHSVKVFDVENFDMINMI-KLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSP 146 (558)
T ss_pred EeeccCcccceeEEEeeccchhhhc-ccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCc
Confidence 999877 999999999876544321 122233333332211122211344455678999999 333 333444569999
Q ss_pred eEEEEeeecCCCcEEEEEECCCeEEEEEcCC-CC-----eeeEE---------eCCCCcEEEEEEcCCCCEEEEEeeccC
Q 001343 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MG-----SRVDY---------DAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1096)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~-----~~~~~---------~~~~~~i~~l~~s~~~~~l~~~~~~~~ 561 (1096)
|..+.+.+.. +.+++....|.|..|.... .+ ....+ .-......++.|+|+|..+.+.+.
T Consensus 147 V~~i~y~qa~--Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~--- 221 (558)
T KOG0882|consen 147 VKKIRYNQAG--DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP--- 221 (558)
T ss_pred eEEEEeeccc--cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc---
Confidence 9999998754 5788999999999998762 11 11111 112236789999999999998876
Q ss_pred CCCeEEEEeCCCCeeeEEEcC--------------------------------cCccceEEEEEeCCCCEEEEEEcCCeE
Q 001343 562 GDSFLVEWNESEGTIKRTYAG--------------------------------FRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1096)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~--------------------------------~~~~~i~~~~~~~~~~~l~~~~~dg~i 609 (1096)
+..|++++.++|+.++.+.. +.......+.|...+++|+.++-= .|
T Consensus 222 -DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gi 299 (558)
T KOG0882|consen 222 -DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GI 299 (558)
T ss_pred -ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eE
Confidence 99999999999887665532 111122346788889999888764 38
Q ss_pred EEEeCCCCeEEEEee
Q 001343 610 KFWDMDNVNILTSTD 624 (1096)
Q Consensus 610 ~iwd~~~~~~~~~~~ 624 (1096)
++.++.++...+.+.
T Consensus 300 kvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 300 KVINLDTNTVVRILG 314 (558)
T ss_pred EEEEeecCeEEEEec
Confidence 899999888777654
No 299
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=4.5e-06 Score=93.63 Aligned_cols=205 Identities=13% Similarity=0.040 Sum_probs=126.2
Q ss_pred CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC--CCcEEEEE-cCCceEEEeeCCCCCeEEEEeee
Q 001343 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (1096)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~--d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~ 504 (1096)
..|.+-|.+... .+ .+... +.+....|+|||+.+.+++... +..|+++| .+|+. ..+....+......|+|
T Consensus 169 ~~l~~~d~dg~~-~~---~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-~~lt~~~g~~~~~~~SP 242 (419)
T PRK04043 169 SNIVLADYTLTY-QK---VIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-EKIASSQGMLVVSDVSK 242 (419)
T ss_pred ceEEEECCCCCc-ee---EEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-EEEecCCCcEEeeEECC
Confidence 456666665443 22 12223 3778999999998422222222 45688889 55544 33433455566677866
Q ss_pred cCCCcEEE-EEECC--CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEc
Q 001343 505 KENIQFIF-STAID--GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1096)
Q Consensus 505 ~~~~~~l~-s~~~d--g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1096)
||..++ +.+.+ ..|.++|+..+... .+...........|+|||+.|+..+. ..+...|+++|+.+++..+...
T Consensus 243 --DG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sd-r~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 243 --DGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSD-RLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred --CCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEEC-CCCCceEEEEECCCCCeEeCcc
Confidence 555554 44444 45666677665533 33333333445689999999988763 3345589999998887754433
Q ss_pred CcCccceEEEEEeCCCCEEEEEEcC---------CeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC
Q 001343 582 GFRKKSNGVVQFDTTQNHFLAVGED---------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 582 ~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
.. . . ...|+|+|+.++..+.. ..|++.|+.++.... +.... ......|+|||+.++..+.+
T Consensus 319 ~g-~-~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~---~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 319 HG-K-N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANG---VNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred CC-C-c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCC---CcCCeEECCCCCEEEEEEcc
Confidence 21 1 1 24899999998876643 368888988876543 33222 23468999999988777653
No 300
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=3e-07 Score=93.27 Aligned_cols=170 Identities=13% Similarity=0.163 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHcChHHHHHHHHHhhCCC--------ccHHHHHHHHhccCHHHHHHHHcCCCCCCCcccchhhHHHHH
Q 001343 6 RELVFLILQFLEEEKFKESVHKLEKESGFF--------FNMKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIR 77 (1096)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~ 77 (1096)
.-+.|+|+.|+..+||.++|..|-++|.+. .++..+++++++|+...|+.-...=...-. .....+-|.+.
T Consensus 116 ~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk-K~~S~lEf~lR 194 (389)
T KOG0396|consen 116 NKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK-KEESSLEFQLR 194 (389)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccchhhhHHH
Confidence 446899999999999999999999999976 236789999999999988887643100000 11223899999
Q ss_pred HHHHHHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccCccchhhhcccCCchHHHHHHHH--HHHhhcccCc
Q 001343 78 KQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGDTKTARGIMLI--ELKKLIEANP 155 (1096)
Q Consensus 78 ~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~--~l~~~i~~~~ 155 (1096)
.|.|+|||+.+++.+|+.|.+++|+|....+.++++....++.++...+...+.. .....|=..+. .++.+..--.
T Consensus 195 lQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sky~~--l~~~~rw~~l~~lF~s~a~~l~~ 272 (389)
T KOG0396|consen 195 LQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSKYLN--LLTADRWSVLADLFLSEALKLFG 272 (389)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCcccccC--cccHHHHHHHHHHhhHHHHHHhC
Confidence 9999999999999999999999999998888899999999998765443222211 12233323333 3333333211
Q ss_pred cccccccCCCCCc-hHHHHHHHHHHHHHH-hcCCC
Q 001343 156 LFRDKLAFPTLKS-SRLRTLINQSLNWQH-QLCKN 188 (1096)
Q Consensus 156 ~~~~~~~~~~~p~-~rL~~Ll~qa~~~q~-~~~~~ 188 (1096)
+|. .+|..+|+-.+..|+ -.|.+
T Consensus 273 ----------i~~~~~L~~~l~~GLsalKTp~c~~ 297 (389)
T KOG0396|consen 273 ----------IPINPALTIYLQAGLSALKTPRCLN 297 (389)
T ss_pred ----------CCCCcHHHHHHHhhhhhcccccccc
Confidence 222 257777777777663 34544
No 301
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.66 E-value=1.9e-05 Score=81.01 Aligned_cols=233 Identities=14% Similarity=0.141 Sum_probs=152.1
Q ss_pred eEEEEEcCCCCcEEEEEeCCC-eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE
Q 001343 347 VISMDFHPSHQTLLLVGSSNG-EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 347 V~~v~fsp~g~~llasg~~dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~ 425 (1096)
.-.++.+|+....+|.+-.-| ...+||..+++...... .-..+.|.|| -.||+||++|++.=
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytTE 69 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTTE 69 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEec
Confidence 356888896555777777766 67899999998775311 1122336666 57999999999863
Q ss_pred -----CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe----------------CCCcEEEEE-cC
Q 001343 426 -----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG----------------DDKLIKVWE-LS 483 (1096)
Q Consensus 426 -----~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s----------------~d~~i~iwd-~~ 483 (1096)
..|.|-|||... .++.+.++..|.-.-..+.+.|||+.+.++-|+ .+-++.+-| .+
T Consensus 70 nd~~~g~G~IgVyd~~~--~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 70 NDYETGRGVIGVYDAAR--GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred cccCCCcEEEEEEECcC--CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence 348899999983 244444777888888899999999843333332 223456667 78
Q ss_pred CceEEE--e--eCCCCCeEEEEeeecCCCcEEEEEECCCe-------EEEEEcCCCCeeeEEeC-------CCCcEEEEE
Q 001343 484 GRKLFN--F--EGHEAPVYSICPHHKENIQFIFSTAIDGK-------IKAWLYDTMGSRVDYDA-------PGHWCTTML 545 (1096)
Q Consensus 484 ~~~~~~--~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~~-------~~~~i~~l~ 545 (1096)
|+.+.. + .-|...|..+++.. +|..++..-..|. +-+++ .++....+.. -.+.+-+++
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~~--~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa 223 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVDG--DGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIA 223 (305)
T ss_pred CceeeeeecCccccccceeeEEecC--CCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEE
Confidence 887766 3 33777888888865 4444444333322 23332 2222222222 234799999
Q ss_pred EcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEE
Q 001343 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIK 610 (1096)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 610 (1096)
+++++..+++.+. ..+.+.+||..+++.+....-. .++.++..+++ ++++ +..|.+.
T Consensus 224 ~~~~g~~ia~tsP---rGg~~~~~d~~tg~~~~~~~l~---D~cGva~~~~~-f~~s-sG~G~~~ 280 (305)
T PF07433_consen 224 ADRDGRLIAVTSP---RGGRVAVWDAATGRLLGSVPLP---DACGVAPTDDG-FLVS-SGQGQLI 280 (305)
T ss_pred EeCCCCEEEEECC---CCCEEEEEECCCCCEeeccccC---ceeeeeecCCc-eEEe-CCCccEE
Confidence 9999998887664 3789999999999998876654 34556655555 4444 4445543
No 302
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.60 E-value=6.1e-05 Score=85.21 Aligned_cols=187 Identities=12% Similarity=0.096 Sum_probs=112.1
Q ss_pred EEEEEeCCCcEEEEE-cCCceEEEeeCCCC--CeE-----EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC
Q 001343 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEA--PVY-----SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~--~v~-----~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 538 (1096)
.++.++.++.+.-+| .+|+.+........ ... .+.-.+.-.+..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 566777788888889 78888766542210 000 0000011123567888899999999999999888776544
Q ss_pred CcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccc----eEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 001343 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 539 ~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1096)
....+..+. + ..++++.. ++.++.+|.++|+.+-.+....... ...-.. .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v~-~-~~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVVS-D-GLVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEEE-C-CEEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 322222222 3 34555543 7899999999999887776432100 001111 1346777888999999999
Q ss_pred CCCeEEEEeecCCCC--CC---ccEEEEeC--CCCEEEEEECCCcEEEEEcCCC
Q 001343 615 DNVNILTSTDAEGGL--PN---LPRLRFSK--EGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 615 ~~~~~~~~~~~~~~~--~~---v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.+|+.+......... .. ...+..+| .+..+++++.+|.+..+|..++
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 999877655422110 00 11111222 3456666777888888887766
No 303
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.60 E-value=4.2e-07 Score=93.28 Aligned_cols=156 Identities=13% Similarity=0.143 Sum_probs=108.7
Q ss_pred CeeeeeecCCCcEEEEecC-CeEEEEEcccc----eEEEeecCCCCCeeEEEEecCCCcEEEEe---eCCCeEEEEeecc
Q 001343 833 AVPCIALSKNDSYVMSATG-GKISLFNMMTF----KVMTTFMSPPPASTFLAFHPQDNNIIAIG---TEDSTIHIYNVRV 904 (1096)
Q Consensus 833 ~v~~l~~s~dg~~la~~~d-g~v~iwd~~~~----~~~~~~~~h~~~i~~l~~s~~d~~~l~s~---~~dg~i~iw~~~~ 904 (1096)
....+..++.+++||++.. ....++++... +++..... ...-+++.|.. +.....++ ++...+.+|+...
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeee-ccceEEEEeecCCceeeeeecccc
Confidence 3445677889999999984 44556655332 22322221 22233444444 33334333 4445556665554
Q ss_pred ceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEE
Q 001343 905 DELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVY 983 (1096)
Q Consensus 905 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~ 983 (1096)
+. ....-||-. .+.+|+||||++++++ ..|..|+|-.+...-.+..+.-+| ...|..++.
T Consensus 142 ~~----------------~~~~lGhvS-ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH--~eFVS~isl 202 (390)
T KOG3914|consen 142 GR----------------CEPILGHVS-MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGH--KEFVSTISL 202 (390)
T ss_pred cC----------------cchhhhhhh-hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcccc--Hhheeeeee
Confidence 33 345567776 9999999999999999 689999999998888888888776 999999998
Q ss_pred eeCCcEEEEEecCCcEEEEecCCCcee
Q 001343 984 SCNSQLVFATFCDGNIGVFDADTLRLR 1010 (1096)
Q Consensus 984 s~dg~~la~~~~dg~i~vwd~~~~~~~ 1010 (1096)
-+ +..|++++.|+++++||+.+|+.+
T Consensus 203 ~~-~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 203 TD-NYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred cc-CceeeecCCCCcEEEEecccCCcc
Confidence 65 455899999999999999999854
No 304
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.60 E-value=8.1e-06 Score=79.04 Aligned_cols=208 Identities=5% Similarity=-0.070 Sum_probs=136.0
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1096)
+|......+.....-.|...|+-+.=.-+.+.=+..++.|.++++.++..+.... .-|.
T Consensus 98 ~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~---------------------~~h~ 156 (344)
T KOG4532|consen 98 LFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF---------------------AVHN 156 (344)
T ss_pred eecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc---------------------eeec
Confidence 6665554444444444555544433333322224456788888888887554321 1132
Q ss_pred C--CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cC
Q 001343 407 I--SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1096)
Q Consensus 407 ~--~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~ 483 (1096)
. .+.++++|+|++++++.+....|..|.++...............+.-.+..|+.... .+|++..||++.||| ..
T Consensus 157 ~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 157 QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecc
Confidence 2 388999999999999999999999999876443222112334455667889998887 899999999999999 43
Q ss_pred -CceEE----EeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCC--------cEEEEEEcCCC
Q 001343 484 -GRKLF----NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--------WCTTMLYSADG 550 (1096)
Q Consensus 484 -~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~i~~l~~s~~~ 550 (1096)
+.+.. +-..|.+.+..+.|++.+--.+|+..-.-+.+++.|+++............ .|..-.|+.++
T Consensus 235 ~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n 314 (344)
T KOG4532|consen 235 MATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNEN 314 (344)
T ss_pred cccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCC
Confidence 33322 224588999999998765556777766678899999998776554332222 25566666666
Q ss_pred CEEEEEe
Q 001343 551 SRLFSCG 557 (1096)
Q Consensus 551 ~~l~~~~ 557 (1096)
..+.+..
T Consensus 315 ~s~~v~~ 321 (344)
T KOG4532|consen 315 ESNDVKN 321 (344)
T ss_pred ccccccc
Confidence 5555443
No 305
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.59 E-value=6.6e-05 Score=78.74 Aligned_cols=218 Identities=16% Similarity=0.145 Sum_probs=138.9
Q ss_pred EEEEcC-CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEe-cCCCcEEEEEEeCCCcEEEEE-cCCceE
Q 001343 411 RVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA-YPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1096)
Q Consensus 411 ~l~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s-~d~~~~~l~s~s~d~~i~iwd-~~~~~~ 487 (1096)
++.|.+ ++.++++-...+.|..|+..++.... +. .. ....+++. +++. |+.+..++ +.++| .+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~-~~-~~~G~~~~~~~g~---l~v~~~~~-~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----ID-LP-GPNGMAFDRPDGR---LYVADSGG-IAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EE-SS-SEEEEEEECTTSE---EEEEETTC-EEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----Ee-cC-CCceEEEEccCCE---EEEEEcCc-eEEEecCCCcEE
Confidence 578888 66677776678999999998865322 11 11 27788888 6654 55555444 45559 666543
Q ss_pred EEeeC-----CCCCeEEEEeeecCCCcEEEEEECC--------CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEE
Q 001343 488 FNFEG-----HEAPVYSICPHHKENIQFIFSTAID--------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 488 ~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 554 (1096)
..... .....+.+++.+ +|.+.++.... |.|..++.. .........-...+.++|+|+++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~--~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDP--DGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-T--TS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEcC--CCCEEEEecCCCccccccccceEEECCC--CeEEEEecCcccccceEECCcchhee
Confidence 33322 234567788865 66766665543 456666655 33333333344678999999999887
Q ss_pred EEeeccCCCCeEEEEeCCCCe--e--eEEEc-CcCc-cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCC
Q 001343 555 SCGTSKDGDSFLVEWNESEGT--I--KRTYA-GFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~--~--~~~~~-~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (1096)
.+.. ..+.|..+++.... . .+.+. .... .....+++..+|+..++....+.|.+++.+ |+.+..+.....
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~ 225 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP 225 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC
Confidence 6543 37788888885321 1 22221 1111 136679999999988888889999999987 888888887744
Q ss_pred CCCccEEEEe-CCCCEEEEEE
Q 001343 629 LPNLPRLRFS-KEGNLLAVTT 648 (1096)
Q Consensus 629 ~~~v~~~~~s-~~~~~l~~~~ 648 (1096)
.+++++|. ++.+.|++.+
T Consensus 226 --~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 226 --RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --SEEEEEEESTTSSEEEEEE
T ss_pred --CEEEEEEECCCCCEEEEEe
Confidence 78999994 5666665543
No 306
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.58 E-value=2.1e-07 Score=88.03 Aligned_cols=134 Identities=22% Similarity=0.220 Sum_probs=98.8
Q ss_pred HHHHHHHHhccCHHHHHHHHcCCCCCCCcccchhhHHHHHHHHHHHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001343 38 MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQ 117 (1096)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~ 117 (1096)
+..++++|++|+++.|++.+......-....+ .+.|.|+.|+|+|||..++..+|+.+.|+++.|......+.++.+..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~-~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKRNS-SLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCC-chhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56799999999999999999876322212212 38999999999999999999999999999997775445677888888
Q ss_pred HhcccCccc--hhhhcccCCchHHHHHHHHHHHhhcccCccccccccCCCCC-chHHHHHHHHHHHHH
Q 001343 118 LLTLSNFRE--NEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLK-SSRLRTLINQSLNWQ 182 (1096)
Q Consensus 118 ~~~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~~~~~~~~~~p-~~rL~~Ll~qa~~~q 182 (1096)
++....... ...+..+- ....|+++++.+.+.+-...- +| .+.|..++++....+
T Consensus 84 lL~~~~~~~~~~s~~~~l~-~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELL-SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHcCCcccccchHHHHHh-ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 887766554 22333222 337789999999887654221 33 457999988876654
No 307
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.57 E-value=1.1e-06 Score=84.58 Aligned_cols=208 Identities=13% Similarity=0.190 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC
Q 001343 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (1096)
Q Consensus 347 V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~ 426 (1096)
|+.+.|+-+- .|+++..++.+......++.+... |+-..... +.+.+..|+.+=.+-+.+-.++.+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~-----~~rt~~i~--~~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISL-----WERDDGID--PFKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEech-----hhcccCcC--ceeeeeccCCCCCcccccccCCceEecCC
Confidence 6677777664 588888888888777666554421 11111111 11123344444444444445788999999
Q ss_pred CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe-----CCCcEEEEE-cC-CceEEEeeCCCCCeEE
Q 001343 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-----DDKLIKVWE-LS-GRKLFNFEGHEAPVYS 499 (1096)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-----~d~~i~iwd-~~-~~~~~~~~~~~~~v~~ 499 (1096)
||.+.+++.+. .++....+..-...-.+.++...++ .+.++. .-+..+.|+ .. +..+...+ -...|.+
T Consensus 110 dg~~~v~s~~~--~~~~~~~i~~~~~~~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDK--DLALMSRIPSIHSGSASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTA 184 (319)
T ss_pred CceEEEEechH--HHhhhhhcccccccccccceeeccc--EEecCCcceEeeccceeeeccccccccccccc-ccccchh
Confidence 99999999775 2221111111111112223333444 333322 112344454 11 11111112 2233889
Q ss_pred EEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEeCCCCcEEEEEEcC-CCCEEEEEeeccCCCCeEEEEeCCC
Q 001343 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~-~~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
++-+|... +.+++|+.||.+-+||++...... .+..|..++..+.|+| ++..|++++. +|.+..||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 99888754 688999999999999999774443 4567888999999998 5678888887 99999999765
No 308
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=4.5e-06 Score=93.03 Aligned_cols=506 Identities=12% Similarity=0.072 Sum_probs=248.2
Q ss_pred EEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEE
Q 001343 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (1096)
Q Consensus 542 ~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1096)
+-..|+|...++++++.+....|.+.||- .+|++.+.....- .+.+++|+|..-.++.|=+-|.+.+|...+.+.-.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~--hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV--HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce--ehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 34578999999999988888888998883 5666544332211 34569999988778888889999999988776666
Q ss_pred EeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccc-cccccCCCcccccCcc--eeEEeecCCCeEE----e
Q 001343 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRS-LRAVENPPFEALRTPI--ESVALKVSASSAV----S 694 (1096)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v--~~~~~s~~g~~lv----~ 694 (1096)
....|.. +|..+.||++|..++++..-|.+.+|....-.+. ...+-.|. ....+ .+..+++++..++ +
T Consensus 96 v~~th~a--~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~he---l~~~ltl~cfRL~~~~Ee~~~laKa 170 (1416)
T KOG3617|consen 96 VVETHPA--PIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHE---LNDQLTLWCFRLSYDREEKFKLAKA 170 (1416)
T ss_pred eccCCCC--CceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhH---hhceeeEEEEecCCChHHhhhhhhh
Confidence 5555544 8999999999999999999999999987532111 01111111 01112 2233444432220 1
Q ss_pred cCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEec
Q 001343 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774 (1096)
Q Consensus 695 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 774 (1096)
..+++-.-++....+++...-......-.++|..+..+..+|+|.-.|-. +.+..+.--+ +. ..+-|.+
T Consensus 171 aVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~-----g~~~~V~k~d-----S~-vQmLf~~ 239 (1416)
T KOG3617|consen 171 AVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQN-----GRQRTVHKLD-----SE-VQMLFMG 239 (1416)
T ss_pred hccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCC-----CcEEEEEEcc-----ch-HHHHHhc
Confidence 11111111111111111111111222346777777777777887666643 3333322111 11 1223333
Q ss_pred CCceEEEeecCCeEEEeeccCCccC-------CCCceee-ecCccccccCccccccccccCCCcCCCeeeeeecCCCcEE
Q 001343 775 SAVGLLALGSNGVQKLWKWHRNEQN-------PSGKATA-SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1096)
Q Consensus 775 ~~~~l~~~~~dg~v~vw~~~~~~~~-------~~g~~~~-~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~l 846 (1096)
-...++....+-.+.++-+...... ..|+.-. .+.+..- -..|...+..--|......+.|+|++.-+..|
T Consensus 240 ~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~s-EssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l 318 (1416)
T KOG3617|consen 240 YCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACS-ESSGVLRKSEKYGLELGEGILCMCYGEKEIRL 318 (1416)
T ss_pred ccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccc-cccccccCCcchhhhcCCceEEEEEeccceEE
Confidence 3333333333333333333221100 0000000 0000000 01121111111122246789999999999999
Q ss_pred EEec-CCeEEEEEc-ccc------eEEEeec---CCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccce----eeeee
Q 001343 847 MSAT-GGKISLFNM-MTF------KVMTTFM---SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE----LCVWS 911 (1096)
Q Consensus 847 a~~~-dg~v~iwd~-~~~------~~~~~~~---~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~----~~~w~ 911 (1096)
+.|. .|.+.+|-- .+| .-..++. .-.+.|+.+.|.| -...+++.+....+.+=. ..-. .-.|.
T Consensus 319 ~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~-~k~~~avn~~~~v~ll~E-~~l~~~h~~~~~A 396 (1416)
T KOG3617|consen 319 WAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGP-IKSTAAVNTEEDVVLLGE-NSLTVKHRGKMAA 396 (1416)
T ss_pred EecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEecc-ccchhhhhhhhheeeecc-CchHHHHhhhhHH
Confidence 9888 599999963 221 1222232 3346899999999 666666655544333211 1000 00111
Q ss_pred ccccccccce-eeecCCCCCC-----CCCceEEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEee
Q 001343 912 IDTWEKRKSV-TIHIPAGKTP-----TGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 985 (1096)
Q Consensus 912 ~~~~~~~~~~-~~~~~~~~~~-----~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~ 985 (1096)
++.-. .+- ...-..|... -.+..++.+ ...|++.+.++|..|++++.-.+....... +.....+++..
T Consensus 397 ~q~ss--~S~~L~hc~sGv~~~l~~~~~~~gi~l~--e~~lvvwNgr~v~~y~lq~SG~la~~~~~t-F~cet~~la~~- 470 (1416)
T KOG3617|consen 397 IQTSS--NSFTLLHCTSGVSQDLKLSIPSAGICLG--EKQLVVWNGRTVVTYDLQTSGSLATIQCTT-FSCETTSLAIV- 470 (1416)
T ss_pred hhhcC--CceEEEeeccchhhhhhhccchhhheec--cceEEEEcCceEEEEEecccchhHHHhhhh-hccccchHhHh-
Confidence 10000 000 0011111111 022223322 345666778889999996332111111110 01122223322
Q ss_pred CCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCCCCc
Q 001343 986 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGK 1065 (1096)
Q Consensus 986 dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~~~ 1065 (1096)
+.++...++.+ |.++.+. |.++..+..+. ..++. .+-.-.|.+++++...+.++-+|+...+.+
T Consensus 471 nqN~ycies~~--Vfvrt~q-Gtv~q~i~~se---------iEg~~----~~ldi~g~~l~v~t~~~~~k~~dvsr~e~k 534 (1416)
T KOG3617|consen 471 NQNLYCIESDK--VFVRTLQ-GTVRQEISLSE---------IEGVV----VLLDIMGELLIVQTVSTVAKRLDVSRAELK 534 (1416)
T ss_pred hcceEEeccCc--EEEEecc-hhhhhhccchh---------ccCce----ehhhhccceeEEeehHHHHHHhhhhhhccc
Confidence 22233333333 4444433 33333332111 11221 221115899999998888888888887732
Q ss_pred cccCCCC---------------CCCCCCCCCCCCCCCCCCC
Q 001343 1066 WGVSPPV---------------DNGILNSRTTSSSTSNHTP 1091 (1096)
Q Consensus 1066 ~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 1091 (1096)
--.+-.. =+.+++.+|-.+|.+..++
T Consensus 535 a~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~p 575 (1416)
T KOG3617|consen 535 AVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAP 575 (1416)
T ss_pred ccccccccccccCCcCceEEEeeccCCCCcccchhhccCCC
Confidence 2211111 1555677777777777666
No 309
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.57 E-value=4.6e-05 Score=86.22 Aligned_cols=258 Identities=8% Similarity=0.067 Sum_probs=154.9
Q ss_pred EEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEE-EEEcCCCCEEEEEECCCeEEEEEccCC
Q 001343 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR-VAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1096)
Q Consensus 360 lasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~spd~~~l~s~~~dg~i~vwd~~~~ 438 (1096)
++.++.+|.+.-+|..+|+.+-+.+. . +.+.+ ... .+..++++..++.+.-+|.++|
T Consensus 123 v~v~~~~g~l~ald~~tG~~~W~~~~-----------------~---~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG 180 (394)
T PRK11138 123 VYIGSEKGQVYALNAEDGEVAWQTKV-----------------A---GEALSRPVV--SDGLVLVHTSNGMLQALNESDG 180 (394)
T ss_pred EEEEcCCCEEEEEECCCCCCcccccC-----------------C---CceecCCEE--ECCEEEEECCCCEEEEEEccCC
Confidence 55677899999999999997643111 1 11111 011 2446667778899999999999
Q ss_pred Cccccceeeccccc---CEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC-------CeEEEEeeecCC
Q 001343 439 NDLRQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA-------PVYSICPHHKEN 507 (1096)
Q Consensus 439 ~~~~~~~~l~~h~~---~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~-------~v~~~~~~~~~~ 507 (1096)
+.+-... ...... ....-... +. .++.++.++.+...| .+|+.+........ ....+...|.-.
T Consensus 181 ~~~W~~~-~~~~~~~~~~~~sP~v~--~~--~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~ 255 (394)
T PRK11138 181 AVKWTVN-LDVPSLTLRGESAPATA--FG--GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV 255 (394)
T ss_pred CEeeeec-CCCCcccccCCCCCEEE--CC--EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE
Confidence 8664321 110000 00011111 22 456677789999999 88887655431110 011111111112
Q ss_pred CcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccc
Q 001343 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS 587 (1096)
Q Consensus 508 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 587 (1096)
+..++.++.+|.+..+|..+++......... ...+. ..+..++.++. ++.++.+|..+|+.+-.........
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~--~~~~~vy~~~~----~g~l~ald~~tG~~~W~~~~~~~~~ 327 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGS--VNDFA--VDGGRIYLVDQ----NDRVYALDTRGGVELWSQSDLLHRL 327 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCC--ccCcE--EECCEEEEEcC----CCeEEEEECCCCcEEEcccccCCCc
Confidence 3467778889999999999888776554321 11222 24556666654 8899999999998765443211111
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCcc-EEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP-RLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 588 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
...... .+..++.++.+|.+++.|..+|+.+........ .+. ...+ .+..|++++.||.+..++.
T Consensus 328 ~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~--~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 328 LTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSS--GFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC--cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 221222 256788999999999999999999887765322 222 1122 3457888999999888764
No 310
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.55 E-value=0.00013 Score=76.51 Aligned_cols=219 Identities=16% Similarity=0.144 Sum_probs=142.4
Q ss_pred EEEEcC-CCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc-CCCCEEEEEEC
Q 001343 349 SMDFHP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS-PDGNYVGVAFT 426 (1096)
Q Consensus 349 ~v~fsp-~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pd~~~l~s~~~ 426 (1096)
+.+|.+ +|. |+++--..+.|..|+..+++... +. .. ....+++. +++++ +++..
T Consensus 4 gp~~d~~~g~-l~~~D~~~~~i~~~~~~~~~~~~--------------------~~-~~-~~~G~~~~~~~g~l-~v~~~ 59 (246)
T PF08450_consen 4 GPVWDPRDGR-LYWVDIPGGRIYRVDPDTGEVEV--------------------ID-LP-GPNGMAFDRPDGRL-YVADS 59 (246)
T ss_dssp EEEEETTTTE-EEEEETTTTEEEEEETTTTEEEE--------------------EE-SS-SEEEEEEECTTSEE-EEEET
T ss_pred ceEEECCCCE-EEEEEcCCCEEEEEECCCCeEEE--------------------Ee-cC-CCceEEEEccCCEE-EEEEc
Confidence 577888 555 78887788999999998876542 11 11 27777887 56544 44555
Q ss_pred CCeEEEEEccCCCccccceeec--c-cccCEEEEEEecCCCcEEEEEEeCC--------CcEEEEEcCCceEEEeeCCCC
Q 001343 427 KHLIQLYSYAGSNDLRQHSQID--A-HVGAVNDLAFAYPNKLLCVVTCGDD--------KLIKVWELSGRKLFNFEGHEA 495 (1096)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~l~--~-h~~~v~~l~~s~d~~~~~l~s~s~d--------~~i~iwd~~~~~~~~~~~~~~ 495 (1096)
. .+.++|..+++... +.... . .....+.+++.++|+ +.++.... |.|..++..++...... .-.
T Consensus 60 ~-~~~~~d~~~g~~~~-~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~ 134 (246)
T PF08450_consen 60 G-GIAVVDPDTGKVTV-LADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPDGKVTVVAD-GLG 134 (246)
T ss_dssp T-CEEEEETTTTEEEE-EEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEE-EES
T ss_pred C-ceEEEecCCCcEEE-EeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCCCeEEEEec-Ccc
Confidence 4 45556988875432 22221 2 445789999999998 66665543 45777774455433333 345
Q ss_pred CeEEEEeeecCCCcEE-EEEECCCeEEEEEcCCCCe-e---eEE-eCCC--CcEEEEEEcCCCCEEEEEeeccCCCCeEE
Q 001343 496 PVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTMGS-R---VDY-DAPG--HWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~-~---~~~-~~~~--~~i~~l~~s~~~~~l~~~~~~~~~~~~i~ 567 (1096)
..+.++|++ +++.| ++-+..+.|..++++.... . ..+ .... ...-.+++..+|+..++... .+.|.
T Consensus 135 ~pNGi~~s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I~ 208 (246)
T PF08450_consen 135 FPNGIAFSP--DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRIV 208 (246)
T ss_dssp SEEEEEEET--TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEEE
T ss_pred cccceEECC--cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEEE
Confidence 578999977 55555 4667788999999875443 1 112 2222 34888999999987777654 88999
Q ss_pred EEeCCCCeeeEEEcCcCccceEEEEEe-CCCCEEEEEE
Q 001343 568 EWNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVG 604 (1096)
Q Consensus 568 iwd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~ 604 (1096)
+++.. |+.+..+..... .+++++|. ++.+.|++.+
T Consensus 209 ~~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEEE
T ss_pred EECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEEe
Confidence 99988 888888877644 77888994 5666665544
No 311
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.53 E-value=2.4e-07 Score=92.53 Aligned_cols=164 Identities=16% Similarity=0.117 Sum_probs=122.3
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeE
Q 001343 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (1096)
Q Consensus 351 ~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i 430 (1096)
+|+-+-.-+-++.+.+-.|-+-|+++|-... |. .++.|.++.|...+..+..|+.+|.|
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRngeI 276 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRNGEI 276 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccCCcE
Confidence 6664432223444577889999999876432 22 67789999999999999999999999
Q ss_pred EEEEccCCCcc--ccceeecccccCEEEEEEec-CCCcEEEEEEeCCCcEEEEE-cCCce---EEEeeCCCCCeEEEEee
Q 001343 431 QLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRK---LFNFEGHEAPVYSICPH 503 (1096)
Q Consensus 431 ~vwd~~~~~~~--~~~~~l~~h~~~v~~l~~s~-d~~~~~l~s~s~d~~i~iwd-~~~~~---~~~~~~~~~~v~~~~~~ 503 (1096)
.++|+..+..- ... .---|...|+++.... +++ +|++.+.+|.|++|| ..-++ +.++.||-..-.-+-++
T Consensus 277 ~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~ 353 (425)
T KOG2695|consen 277 FVIDLRCRNQGNGWCA-QRLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAH 353 (425)
T ss_pred EEEEeeecccCCCcce-EEEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccccccc
Confidence 99999865211 111 1224899999998877 566 899999999999999 55555 88999997665555555
Q ss_pred ecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC
Q 001343 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538 (1096)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 538 (1096)
-.+....+++++.|...|||.++.+....+.....
T Consensus 354 v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 354 VKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred cccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 55566789999999999999999888777665443
No 312
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.51 E-value=5.5e-05 Score=79.20 Aligned_cols=221 Identities=14% Similarity=0.089 Sum_probs=138.8
Q ss_pred CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccce
Q 001343 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445 (1096)
Q Consensus 366 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 445 (1096)
+|.|..||..+|+.+-+.. +..-.....+. ..+++.++++++.++.|..||..+|+.+-...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~-----------------~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~ 63 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYD-----------------LGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFD 63 (238)
T ss_dssp TSEEEEEETTTTEEEEEEE-----------------CSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEE-----------------CCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEee
Confidence 6889999999998875421 11101122211 23367778888899999999999998665332
Q ss_pred eecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe-eCCCCC---eEEEEeeecCCCcEEEEEECCCeE
Q 001343 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EGHEAP---VYSICPHHKENIQFIFSTAIDGKI 520 (1096)
Q Consensus 446 ~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-~~~~~~---v~~~~~~~~~~~~~l~s~~~dg~i 520 (1096)
+.+..... ... ++. .++.++.++.++.+| .+|+.+... ...... ........ .+..++.+..++.|
T Consensus 64 -~~~~~~~~---~~~-~~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~l 134 (238)
T PF13360_consen 64 -LPGPISGA---PVV-DGG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV--DGDRLYVGTSSGKL 134 (238)
T ss_dssp -CSSCGGSG---EEE-ETT--EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE--ETTEEEEEETCSEE
T ss_pred -ccccccce---eee-ccc--ccccccceeeeEecccCCcceeeeeccccccccccccccCceE--ecCEEEEEeccCcE
Confidence 22211111 222 334 466677888999999 999999884 433111 11222222 24678888889999
Q ss_pred EEEEcCCCCeeeEEeCCCCc----------EEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEE
Q 001343 521 KAWLYDTMGSRVDYDAPGHW----------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV 590 (1096)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~~----------i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~ 590 (1096)
..+|.++++.+......... +..-.+..++ .++.+.. ++.+..+|..+++.+.... .. ....
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~----~g~~~~~d~~tg~~~w~~~-~~--~~~~ 206 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSG----DGRVVAVDLATGEKLWSKP-IS--GIYS 206 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECC----TSSEEEEETTTTEEEEEEC-SS---ECE
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcC----CCeEEEEECCCCCEEEEec-CC--CccC
Confidence 99999999998877664422 1222233344 5555554 5544444999999664333 22 2221
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEE
Q 001343 591 VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS 622 (1096)
Q Consensus 591 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 622 (1096)
.....+..+++++.++.|..||+.+++.+..
T Consensus 207 -~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 207 -LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp -CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred -CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 1456788888888999999999999987753
No 313
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.50 E-value=4.6e-05 Score=79.77 Aligned_cols=218 Identities=15% Similarity=0.112 Sum_probs=139.6
Q ss_pred CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeec
Q 001343 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHK 505 (1096)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~ 505 (1096)
+|+|..||..+|+.+-... +..-.....+..+ +++. .+++++.++.+..|| .+|+.+..+.. ..++...-. .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~-~~~~~~~~~~~~~-~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~- 74 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYD-LGPGIGGPVATAV-PDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-V- 74 (238)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSSCSSEEETEE-EETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-E-
T ss_pred CCEEEEEECCCCCEEEEEE-CCCCCCCccceEE-EeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-e-
Confidence 6889999998888765432 2111222222223 2455 577778999999999 79999888765 222221111 1
Q ss_pred CCCcEEEEEECCCeEEEEEcCCCCeeeEE-eCCC--C-cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEc
Q 001343 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPG--H-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1096)
Q Consensus 506 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~--~-~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1096)
++..+++++.++.+..+|..+++..... .... . .........++..++++.. ++.|+.+|.++|+.+..+.
T Consensus 75 -~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 75 -DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp -ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEEE
T ss_pred -cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEee
Confidence 2346777888999999999999998874 3221 1 1222333334777777765 8899999999999988887
Q ss_pred CcCccc---------eEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCc
Q 001343 582 GFRKKS---------NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1096)
Q Consensus 582 ~~~~~~---------i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 652 (1096)
...... +..-....++ .++.++.++.+.-+|..+++.+.... .. .+.. ....++..+++++.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~---~~~~-~~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS---GIYS-LPSVDGGTLYVTSSDGR 223 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTTE
T ss_pred cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC---CccC-CceeeCCEEEEEeCCCE
Confidence 643211 1111222234 77777777764444999999765333 21 2222 14567788888889999
Q ss_pred EEEEEcCCCc
Q 001343 653 FKILANAIGL 662 (1096)
Q Consensus 653 i~iwd~~~~~ 662 (1096)
+..||+.+++
T Consensus 224 l~~~d~~tG~ 233 (238)
T PF13360_consen 224 LYALDLKTGK 233 (238)
T ss_dssp EEEEETTTTE
T ss_pred EEEEECCCCC
Confidence 9999999984
No 314
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.49 E-value=2.7e-06 Score=81.90 Aligned_cols=162 Identities=15% Similarity=0.177 Sum_probs=103.0
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.|.+.=.+-+.+-.+.. +++|+.||.+.+.+.+.-..+.. ++ -..|. .-.+......++.|
T Consensus 87 ~~sep~p~~~~s~~~t~-V~~~~~dg~~~v~s~~~~~~~~~-~i----------------~~~~~-~~as~~~~~~~~~i 147 (319)
T KOG4714|consen 87 KNSEIDPNDACTMTDNR-VCIGYADGSLAVFSTDKDLALMS-RI----------------PSIHS-GSASRKICRHGNSI 147 (319)
T ss_pred ccCCCCCcccccccCCc-eEecCCCceEEEEechHHHhhhh-hc----------------ccccc-cccccceeecccEE
Confidence 45544444444445554 89999999999999876222211 00 00111 11122222344455
Q ss_pred EEEEC-----CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC-ceEEEeeCCC
Q 001343 422 GVAFT-----KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHE 494 (1096)
Q Consensus 422 ~s~~~-----dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~-~~~~~~~~~~ 494 (1096)
.++.. -+..+.|+++..+.+.. -..-...|.+++-+|..+. .+++|+.||.+-+|| ... .+...++.|+
T Consensus 148 ~s~~~g~~n~~d~~~a~~~~p~~t~~~---~~~~~~~v~~l~~hp~qq~-~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk 223 (319)
T KOG4714|consen 148 LSGGCGNWNAQDNFYANTLDPIKTLIP---SKKALDAVTALCSHPAQQH-LVCCGTDDGIVGLWDARNVAMPVSLLKAHK 223 (319)
T ss_pred ecCCcceEeeccceeeecccccccccc---cccccccchhhhCCccccc-EEEEecCCCeEEEEEcccccchHHHHHHhh
Confidence 44321 23456666654333221 1112234999999998776 788899999999999 544 4456678999
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (1096)
.+++.+-|+|+ ++..|+++++||.+..||..+
T Consensus 224 ~~i~eV~FHpk-~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 224 AEIWEVHFHPK-NPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhhheeccCC-CchheeEecCCCcEEEEcCCC
Confidence 99999999997 567899999999999998664
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=3e-06 Score=87.89 Aligned_cols=255 Identities=13% Similarity=0.075 Sum_probs=171.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC-CCcEEEEE-c
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWE-L 482 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~-d~~i~iwd-~ 482 (1096)
|.+.|+.+.-+ -.+++.+++.||.++.|.-..-..+.-...+..|.+.|.+++.+.++. ++.|.+. |..++++| .
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEee
Confidence 77777776654 467999999999999997554232332334678999999999999998 8888777 99999999 5
Q ss_pred CCceEEEeeCCCCCeEEEEeeec-CCC--cEEEEEECCCeEEEEEcCCCCe--eeEEeCCCCcEEEEEEcCCCCEEEEEe
Q 001343 483 SGRKLFNFEGHEAPVYSICPHHK-ENI--QFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~-~~~--~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
+-..+..++--.-|= .+.|... ++. ..-++.-.+|.+.++|-....+ ...-..|..+|..+.+++.+..+++..
T Consensus 85 n~DminmiKL~~lPg-~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPG-FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred ccchhhhcccccCCC-ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 544443332111111 1122112 111 2223345678999998665443 334456788999999999999998876
Q ss_pred eccCCCCeEEEEeCCC------CeeeEEEcC--------cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001343 558 TSKDGDSFLVEWNESE------GTIKRTYAG--------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~------~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1096)
. .|.|.-|.... .+....++. .......++.|+|++..+.+-+.|..|++++.++|+.++.+
T Consensus 164 ~----~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 164 I----SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred c----cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 5 78999998772 111111111 11225667999999999999999999999999998766544
Q ss_pred ecCC-------------------------------CCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCcccccccc
Q 001343 624 DAEG-------------------------------GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVE 669 (1096)
Q Consensus 624 ~~~~-------------------------------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 669 (1096)
.... ....-..+.|...|++|+.++-=| |++.++.++ .+.+.+.
T Consensus 240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn-~v~ri~g 314 (558)
T KOG0882|consen 240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTN-TVVRILG 314 (558)
T ss_pred hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecC-eEEEEec
Confidence 3210 111234677888888888887654 888888887 4554443
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.9e-05 Score=81.19 Aligned_cols=248 Identities=13% Similarity=0.144 Sum_probs=146.3
Q ss_pred ccccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 401 IFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
++.+|...|..++|||..+ ++..++.+..|+|.|+++..... .+..| ..+++++|.-|... +|..|-.+|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5778999999999999877 78889999999999999976655 34556 78999999998876 8999999999999
Q ss_pred EE-c-CCceEEEeeC--CCCCeEEEEeeecC----CCcEEEEEECCCeEEEEEcCCCCe--eeEEe-CCCCcEEEEEEcC
Q 001343 480 WE-L-SGRKLFNFEG--HEAPVYSICPHHKE----NIQFIFSTAIDGKIKAWLYDTMGS--RVDYD-APGHWCTTMLYSA 548 (1096)
Q Consensus 480 wd-~-~~~~~~~~~~--~~~~v~~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~-~~~~~i~~l~~s~ 548 (1096)
|| . ....+..+.+ ...+|..++..+.+ .+.+++....+ +..|.+.-... ..... ...+.+.++++.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99 3 3333333332 23445554432211 12233333322 34565432221 11222 2244566777777
Q ss_pred CCCEEEEEeeccCCCCeEE----EEeCCCCeeeEEEc-Cc---Cccc---eEEEEEeCCCCEEEE-EEcCCeEEEEeCCC
Q 001343 549 DGSRLFSCGTSKDGDSFLV----EWNESEGTIKRTYA-GF---RKKS---NGVVQFDTTQNHFLA-VGEDSQIKFWDMDN 616 (1096)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~----iwd~~~~~~~~~~~-~~---~~~~---i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 616 (1096)
-.+.++....++..-..++ --|..+|..+..-+ ++ .... -..+.-.++.++++. +++.+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 6666665544321111111 11222333222111 11 0000 011222344455554 45667899999999
Q ss_pred CeEEEEeecCCCCCCccEEEEeC-CC-CEEEEEECCCcEEEEEcC
Q 001343 617 VNILTSTDAEGGLPNLPRLRFSK-EG-NLLAVTTADNGFKILANA 659 (1096)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~-~~-~~l~~~~~dg~i~iwd~~ 659 (1096)
++.++.+.... +|.++.... ++ .+|++-. |..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence 99999988763 677776554 33 4555555 4478887654
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.45 E-value=5.3e-05 Score=89.06 Aligned_cols=272 Identities=14% Similarity=0.172 Sum_probs=159.6
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
.+.|.++.|.-++.. ++.+..+|.|.+-|..+..... ...-.+.|.+++||||++.++.
T Consensus 68 d~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLAL 126 (1265)
T ss_pred CcceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEE
Confidence 358999999999985 6777899999999888765432 2334678999999999999999
Q ss_pred EECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc-----eEEEee-----C
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-----KLFNFE-----G 492 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~-----~~~~~~-----~ 492 (1096)
.+..+++.+..-. -..+... .+ ...-.+.++ .++++..+.=.-+. ..|+ .+...+ .
T Consensus 127 iT~~~tll~mT~~-f~~i~E~-~L--------~~d~~~~sk---~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~ 193 (1265)
T KOG1920|consen 127 ITGRQTLLFMTKD-FEPIAEK-PL--------DADDERKSK---FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIE 193 (1265)
T ss_pred EeCCcEEEEEecc-ccchhcc-cc--------ccccccccc---cceecccccceeeecchhhhcccccccccccccchh
Confidence 9988888765431 1222110 01 011111121 33333222111111 1111 111100 0
Q ss_pred CCCCeEEEEeeecCCCcEEEEE-----ECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEE
Q 001343 493 HEAPVYSICPHHKENIQFIFST-----AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~ 567 (1096)
..+.=++++| .+||+++++. ...+.|++||-+ +.....-......-.+++|-|.|..+++.....+ +..|.
T Consensus 194 ~~~~~~~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~Iv 269 (1265)
T KOG1920|consen 194 QDDHKTSISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIV 269 (1265)
T ss_pred hccCCceEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEE
Confidence 1122345666 5688888873 233799999866 2222222222334568999999999998775433 55788
Q ss_pred EEeCCC---CeeeEEEcCcCccceEEEEEeCCCCEEEE---EEcCCeEEEEeCCCCeEEE--EeecCCCCCCccEEEEeC
Q 001343 568 EWNESE---GTIKRTYAGFRKKSNGVVQFDTTQNHFLA---VGEDSQIKFWDMDNVNILT--STDAEGGLPNLPRLRFSK 639 (1096)
Q Consensus 568 iwd~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~---~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~s~ 639 (1096)
++.-+. |...-.+..... .+..++|+.++..|++ ......|++|.+.+..... .+..... .-+.|+|
T Consensus 270 ffErNGL~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p 344 (1265)
T KOG1920|consen 270 FFERNGLRHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDP 344 (1265)
T ss_pred EEecCCccccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccC
Confidence 887432 222222222222 3788999999998888 4455669999998865433 2332222 2288998
Q ss_pred CC-CEEEEEECCCcEEEEEc
Q 001343 640 EG-NLLAVTTADNGFKILAN 658 (1096)
Q Consensus 640 ~~-~~l~~~~~dg~i~iwd~ 658 (1096)
.. ..+.+-..+|...+++.
T Consensus 345 ~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 345 VTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred CCceeEEEEecCCcEEEEEE
Confidence 33 34444446777776665
No 318
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.40 E-value=0.01 Score=69.01 Aligned_cols=595 Identities=12% Similarity=0.079 Sum_probs=287.5
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC---
Q 001343 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--- 417 (1096)
Q Consensus 341 l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--- 417 (1096)
++..+-..|+.+-++| +|.+||.-|.=.+-.+.+.....+ ...+. + .+ ..-++|..+..-.+
T Consensus 303 lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gs-y~~il---------e--t~-~NLgPI~Dm~Vvd~d~q 367 (1096)
T KOG1897|consen 303 LGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGS-YVVIL---------E--TF-VNLGPIVDMCVVDLDRQ 367 (1096)
T ss_pred cCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCc-hhhhh---------h--hc-ccccceeeEEEEecccc
Confidence 3444556777777787 688898877656666554332211 00000 0 01 12346777666442
Q ss_pred -CCEEEEEE---CCCeEEEEEccCCCccccceeecccccCEEEEE--EecCCCcEEEEEEeCCCcEEEEEcCCceEE-Ee
Q 001343 418 -GNYVGVAF---TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA--FAYPNKLLCVVTCGDDKLIKVWELSGRKLF-NF 490 (1096)
Q Consensus 418 -~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~--~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~-~~ 490 (1096)
+..+++|+ .||++++..-.-+-.......+.| ...++.+. +.+.-.. +|+.+-.+ .-++...+++... ..
T Consensus 368 ~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~-eTrvl~i~~e~ee~~~ 444 (1096)
T KOG1897|consen 368 GQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFIS-ETRVLNISEEVEETED 444 (1096)
T ss_pred CCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEecc-ceEEEEEccceEEecc
Confidence 23555554 478999986543322222224556 55677777 4443222 34433323 3344443443211 12
Q ss_pred eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEe
Q 001343 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1096)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd 570 (1096)
.+.......+..+.. +++.|+=.. ...||+++-. .....+...++ ++....+.+...++.++. ++.+...+
T Consensus 445 ~gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~-~ti~~~~~n~sqVvvA~~----~~~l~y~~ 515 (1096)
T KOG1897|consen 445 PGFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGK-ITIGVVSANASQVVVAGG----GLALFYLE 515 (1096)
T ss_pred ccccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCCc-eEEEEEeecceEEEEecC----ccEEEEEE
Confidence 222333333333322 223332222 2346666433 22333333333 344444455556666553 56777777
Q ss_pred CCCCeeeEEEcCcCccceEEEEEeCCC------CEEEEEEcCCeEEEEe-CCCCeEEEEee--cCCCCCCccEEEEeCCC
Q 001343 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQ------NHFLAVGEDSQIKFWD-MDNVNILTSTD--AEGGLPNLPRLRFSKEG 641 (1096)
Q Consensus 571 ~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~l~~~~~dg~i~iwd-~~~~~~~~~~~--~~~~~~~v~~~~~s~~~ 641 (1096)
+..+......+......+.|+.++|-| +++++|..+..+.+.- ..+...+.... ...-...|.-..+-.|.
T Consensus 516 i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~ 595 (1096)
T KOG1897|consen 516 IEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDI 595 (1096)
T ss_pred eeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccc
Confidence 766664333333333478888888742 2677777555544433 33333333222 21111234444555578
Q ss_pred CEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEe-ccCCCc----CCCccc
Q 001343 642 NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE-RSSPVR----PSPIIN 716 (1096)
Q Consensus 642 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~-~~~~~~----~~~~~~ 716 (1096)
.+|.++..||.+.-|.+....-.....+.... -..|+.--.|+..++.-+.+.+......+ ...... .++.+.
T Consensus 596 ~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~l--Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~ 673 (1096)
T KOG1897|consen 596 HYLLVALGDGALLYFVLDINTGQLSDRKKVTL--GTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVN 673 (1096)
T ss_pred eEEEEEcCCceEEEEEEEcccceEcccccccc--CCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhh
Confidence 89999999999887765543212211111111 11233333444444332222222211111 111100 000010
Q ss_pred CCCCccCCCC-CCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccC
Q 001343 717 GVDPTSRSMD-KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHR 795 (1096)
Q Consensus 717 ~~~~~~s~d~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~ 795 (1096)
....-.++.. ..++++. .+.+++..+++. +.-..+.+. -....+.+++.+....+.+.+.......=
T Consensus 674 ~~c~f~s~a~~d~l~~~~-~~~l~i~tid~i-qkl~irtvp------l~~~prrI~~q~~sl~~~v~s~r~e~~~~---- 741 (1096)
T KOG1897|consen 674 HMCPFNSDAYPDSLASAN-GGALTIGTIDEI-QKLHIRTVP------LGESPRRICYQESSLTFGVLSNRIESSAE---- 741 (1096)
T ss_pred hhcccccccCCceEEEec-CCceEEEEecch-hhcceeeec------CCCChhheEecccceEEEEEecccccchh----
Confidence 0011011111 1222222 255666665531 112222222 23356677777744433333332111100
Q ss_pred CccCCCCceeeecCccccccCccccccccccCCCcCCCee---eeeecCC-CcEEEEec-----------CCeEEEEEcc
Q 001343 796 NEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVP---CIALSKN-DSYVMSAT-----------GGKISLFNMM 860 (1096)
Q Consensus 796 ~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~---~l~~s~d-g~~la~~~-----------dg~v~iwd~~ 860 (1096)
. .+.......++++|..+-+.+...-- .....+. +..|..| +.++++|. .|.|.||.+.
T Consensus 742 -~---~~ee~~~s~l~vlD~nTf~vl~~hef--~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~ 815 (1096)
T KOG1897|consen 742 -Y---YGEEYEVSFLRVLDQNTFEVLSSHEF--ERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFE 815 (1096)
T ss_pred -h---cCCcceEEEEEEecCCceeEEeeccc--cccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEe
Confidence 0 11112223566677666654432111 1233333 3447777 67877763 2678888887
Q ss_pred cceEEEeecCC--CCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEE
Q 001343 861 TFKVMTTFMSP--PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQ 938 (1096)
Q Consensus 861 ~~~~~~~~~~h--~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 938 (1096)
.++.++....+ .+.+.++..- +|++||. -+..|++|+....+ .++.-..+.. .+..+.
T Consensus 816 e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~---------------eLr~e~~~~~-~~~aL~ 875 (1096)
T KOG1897|consen 816 ELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTER---------------ELRIECNISN-PIIALD 875 (1096)
T ss_pred cCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccc---------------eehhhhcccC-CeEEEE
Confidence 65544444322 3455555433 4655553 45679999988775 4555555555 788888
Q ss_pred EecCCcEEEEE-ecceEEE--EEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecC
Q 001343 939 FNADQVRMLVV-HETQLAI--YDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1005 (1096)
Q Consensus 939 fs~dg~~l~~~-~d~~i~i--wd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~ 1005 (1096)
..-.|..++++ --+.+.+ |+-..|........-+ ....+++.+-.+..|+. +..+|.+++-..+
T Consensus 876 l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~--p~Wmtaveil~~d~ylg-ae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 876 LQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYN--PNWMTAVEILDDDTYLG-AENSGNLFTVRKD 942 (1096)
T ss_pred EEecCcEEEEeeccceEEEEEEeccCCceEEeehhhC--ccceeeEEEecCceEEe-ecccccEEEEEec
Confidence 88889999883 4454444 5555544433333322 67788888766666555 6778888876654
No 319
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.35 E-value=1.4e-06 Score=87.37 Aligned_cols=164 Identities=12% Similarity=0.143 Sum_probs=122.1
Q ss_pred EEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC----Ceee
Q 001343 457 LAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM----GSRV 532 (1096)
Q Consensus 457 l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~ 532 (1096)
++|+-+-.... ++.+.+-.|-+-|..+.....|. ..+.|.++.|+. .+++++.|+.+|.|...|++.. ....
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~--s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAG--SDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccccccc-cchhHHHHHhcc--cCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 35654333213 55666778888884444444555 567788888865 3479999999999999999876 3344
Q ss_pred EEeCCCCcEEEEEEcC-CCCEEEEEeeccCCCCeEEEEeCCCCee---eEEEcCcCccce-EEEEEeCCCCEEEEEEcCC
Q 001343 533 DYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSN-GVVQFDTTQNHFLAVGEDS 607 (1096)
Q Consensus 533 ~~~~~~~~i~~l~~s~-~~~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg 607 (1096)
..-.|...|+++..-. ++.+|++.+. ++.|.+||.+.-++ ++++.||-+... .-+.+.+....+++++.|.
T Consensus 293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M----~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDc 368 (425)
T KOG2695|consen 293 QRLYHDSSVTSLQILQFSQQKLMASDM----TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDC 368 (425)
T ss_pred EEEEcCcchhhhhhhccccceEeeccC----cCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCee
Confidence 5557788899998877 7778887766 99999999987666 889999865321 2244567778899999999
Q ss_pred eEEEEeCCCCeEEEEeecCCC
Q 001343 608 QIKFWDMDNVNILTSTDAEGG 628 (1096)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~ 628 (1096)
..+||.++.+.++.++.....
T Consensus 369 ytRiWsl~~ghLl~tipf~~s 389 (425)
T KOG2695|consen 369 YTRIWSLDSGHLLCTIPFPYS 389 (425)
T ss_pred EEEEEecccCceeeccCCCCc
Confidence 999999999999998876543
No 320
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.34 E-value=0.0002 Score=74.60 Aligned_cols=294 Identities=18% Similarity=0.203 Sum_probs=152.8
Q ss_pred CeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEE----------CCCcEEEEEcCCCccccccccCCCc--c
Q 001343 607 SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT----------ADNGFKILANAIGLRSLRAVENPPF--E 674 (1096)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~--~ 674 (1096)
++++++|.++++.+..+... ..-.+..+|+++.+++++ ..-.|.+||..+- .....+.-+.. .
T Consensus 17 ~rv~viD~d~~k~lGmi~~g----~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL-~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG----FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTL-SPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE----SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTT-EEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeecc----cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcC-cccceEecCCcchh
Confidence 47999999999998888754 335678899999998764 2346999999876 22222221111 0
Q ss_pred cccCcceeEEeecCCCeE-EecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceE
Q 001343 675 ALRTPIESVALKVSASSA-VSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCR 753 (1096)
Q Consensus 675 ~~~~~v~~~~~s~~g~~l-v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 753 (1096)
..-......+++.||+++ +..++|. ..|.+.|+.. .+-..
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa------------------------------------~SVtVVDl~~---~kvv~ 132 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPA------------------------------------TSVTVVDLAA---KKVVG 132 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSS------------------------------------EEEEEEETTT---TEEEE
T ss_pred eecccccceEEccCCcEEEEEccCCC------------------------------------CeEEEEECCC---Cceee
Confidence 011233456778888776 3333332 4456666652 22233
Q ss_pred EEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCC
Q 001343 754 LVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEA 833 (1096)
Q Consensus 754 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~ 833 (1096)
.+..|| +.+.|-.....+.+.|.||.+.-..++. +|+.... .-.+++... ...
T Consensus 133 ei~~PG--------C~~iyP~~~~~F~~lC~DGsl~~v~Ld~-----~Gk~~~~-~t~~F~~~~-------------dp~ 185 (342)
T PF06433_consen 133 EIDTPG--------CWLIYPSGNRGFSMLCGDGSLLTVTLDA-----DGKEAQK-STKVFDPDD-------------DPL 185 (342)
T ss_dssp EEEGTS--------EEEEEEEETTEEEEEETTSCEEEEEETS-----TSSEEEE-EEEESSTTT-------------S-B
T ss_pred eecCCC--------EEEEEecCCCceEEEecCCceEEEEECC-----CCCEeEe-eccccCCCC-------------ccc
Confidence 445555 1222211224588889999988888764 2332211 112333221 111
Q ss_pred eeeeeecC-CCcEEEEecCCeEEEEEcccceE--EEeecCCCCCeeEEEEecCCCcEEEEe-eCCCeEEEEeeccceeee
Q 001343 834 VPCIALSK-NDSYVMSATGGKISLFNMMTFKV--MTTFMSPPPASTFLAFHPQDNNIIAIG-TEDSTIHIYNVRVDELCV 909 (1096)
Q Consensus 834 v~~l~~s~-dg~~la~~~dg~v~iwd~~~~~~--~~~~~~h~~~i~~l~~s~~d~~~l~s~-~~dg~i~iw~~~~~~~~~ 909 (1096)
...-+++. +++++....+|.|+--|+..... ...+..-...-..-.|-| +|-.++.. -..+.+.+. +..+.
T Consensus 186 f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP-GG~Q~~A~~~~~~rlyvL-Mh~g~--- 260 (342)
T PF06433_consen 186 FEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP-GGWQLIAYHAASGRLYVL-MHQGG--- 260 (342)
T ss_dssp -S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE--SSS-EEEETTTTEEEEE-EEE-----
T ss_pred ccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCC-cceeeeeeccccCeEEEE-ecCCC---
Confidence 22233443 34565555578877777643321 111110000000113444 33332222 223333321 11110
Q ss_pred eeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCc-
Q 001343 910 WSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ- 988 (1096)
Q Consensus 910 w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~- 988 (1096)
...|.. ....|.++|+++++.+.++.. ..++.++.++.|.+
T Consensus 261 ----------------~gsHKd------------------pgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P 302 (342)
T PF06433_consen 261 ----------------EGSHKD------------------PGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKP 302 (342)
T ss_dssp ----------------TT-TTS-------------------EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-
T ss_pred ----------------CCCccC------------------CceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCc
Confidence 111111 124689999999999999875 34588999999887
Q ss_pred EEEEE-ecCCcEEEEecCCCceeEEEc
Q 001343 989 LVFAT-FCDGNIGVFDADTLRLRCYIA 1014 (1096)
Q Consensus 989 ~la~~-~~dg~i~vwd~~~~~~~~~~~ 1014 (1096)
+|++. ..++.+.|||..+|++...+.
T Consensus 303 ~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 303 LLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 45443 457899999999999776665
No 321
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.33 E-value=0.0001 Score=81.80 Aligned_cols=285 Identities=13% Similarity=0.099 Sum_probs=163.0
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
|...|.--+++..++ +++.|+.-|.+.+|+-..++.... ...+..+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence 445666667777788 699999999999999887775431 1333556677788999999999
Q ss_pred EEECCCeEEEEEccCCCccccceee---cccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCce-----EEEeeCCC
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQI---DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK-----LFNFEGHE 494 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l---~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~-----~~~~~~~~ 494 (1096)
.|+..|.|.|+-++.+........- ..|+..|++++|++++. .+++|...|.|..-..+... .+.+....
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 9999999999998875433222111 24788999999999999 89999999999887733311 12233345
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC-CC-cEEEEEEcCC-----CCEEEEEeeccCCCCeEE
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-GH-WCTTMLYSAD-----GSRLFSCGTSKDGDSFLV 567 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~-~i~~l~~s~~-----~~~l~~~~~~~~~~~~i~ 567 (1096)
+.|..+... ++ +|++++.-..+ +++.+.......-+.. .+ .-...+|-|. ...|+++ .-..+
T Consensus 171 s~IVQlD~~---q~-~LLVStl~r~~-Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca------RPG~R 239 (726)
T KOG3621|consen 171 SEIVQLDYL---QS-YLLVSTLTRCI-LCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA------RPGLR 239 (726)
T ss_pred cceEEeecc---cc-eehHhhhhhhh-eeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEe------cCCCc
Confidence 566666643 22 33333332222 3443322211111111 11 0122233332 2344443 44567
Q ss_pred EEeCC-CCeeeEEEcCcC------ccce--E---------------EEEE----eCCCCEEEEEEcCCeEEEEeCCCCeE
Q 001343 568 EWNES-EGTIKRTYAGFR------KKSN--G---------------VVQF----DTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1096)
Q Consensus 568 iwd~~-~~~~~~~~~~~~------~~~i--~---------------~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1096)
+|... .|+.+++..-.. ...+ . .+.+ .-.+..+++-++-| |+|+|..+.+.
T Consensus 240 lWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v 318 (726)
T KOG3621|consen 240 LWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQV 318 (726)
T ss_pred eEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceE
Confidence 78764 344444432100 0000 0 0000 01122344444444 88888877665
Q ss_pred EEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCcccc
Q 001343 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (1096)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 665 (1096)
+.-..... .|.+++ ..++-|++-..|+.+++..+.+..+.+
T Consensus 319 ~l~se~~~---DI~dVs--~~~neiFvL~~d~~l~~~sv~s~qr~l 359 (726)
T KOG3621|consen 319 YLWSEGGH---DILDVS--HCGNEIFVLNLDRGLKVESVASRQRKL 359 (726)
T ss_pred EEeecCCC---ceeEEe--ecCceEEEEecCCceeEEEeehhHHHH
Confidence 55443222 344444 356677777778878877776664433
No 322
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.32 E-value=0.00012 Score=82.39 Aligned_cols=147 Identities=11% Similarity=0.134 Sum_probs=89.0
Q ss_pred eecCCCcEEEEecCCeEEEEEccc-----ceEEEeecCCCCCeeEEEEecCCCcEEEEee-CCCeEEEEeeccceeeeee
Q 001343 838 ALSKNDSYVMSATGGKISLFNMMT-----FKVMTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVRVDELCVWS 911 (1096)
Q Consensus 838 ~~s~dg~~la~~~dg~v~iwd~~~-----~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~-~dg~i~iw~~~~~~~~~w~ 911 (1096)
++.++|++... .+++|.+.|..+ .+.+..+. -......++++| ||+++++++ .+.+|.|.|+.+.+.. +
T Consensus 283 a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~-~- 357 (635)
T PRK02888 283 EAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDL-F- 357 (635)
T ss_pred HhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhh-h-
Confidence 34568877665 467899999987 34555443 345677899999 888776655 5899999999875500 0
Q ss_pred ccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccc----------eeccccc----cCCCCCC
Q 001343 912 IDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKM----------ERIRQWT----PQDALSA 976 (1096)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~----------~~~~~~~----~~~~~~~ 976 (1096)
-+.++......-+..-|. .-...+|.++|....+ --|..|..|++.+. ..+..+. ++| ..
T Consensus 358 ~~~~~~~~~vvaevevGl---GPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh--~~ 432 (635)
T PRK02888 358 DGKIKPRDAVVAEPELGL---GPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGH--NH 432 (635)
T ss_pred hccCCccceEEEeeccCC---CcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccce--ee
Confidence 000111111111122232 4467889999986666 68999999999862 2222222 222 11
Q ss_pred CceEEEEeeCCcEEEEEe
Q 001343 977 PISCAVYSCNSQLVFATF 994 (1096)
Q Consensus 977 ~i~~l~~s~dg~~la~~~ 994 (1096)
....=.-.|||+||++..
T Consensus 433 ~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 433 ASMGETKEADGKWLVSLN 450 (635)
T ss_pred ecCCCcCCCCCCEEEEcc
Confidence 111222368999998765
No 323
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.31 E-value=0.00094 Score=64.97 Aligned_cols=143 Identities=9% Similarity=0.090 Sum_probs=93.1
Q ss_pred cCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 001343 353 HPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQL 432 (1096)
Q Consensus 353 sp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~v 432 (1096)
-+|.+.+++.|+..+.+.--|..+|...-+.. + ...|.+-+.- -|++++.|+..|.+++
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~i-----------------l---g~RiE~sa~v-vgdfVV~GCy~g~lYf 77 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-----------------L---GVRIECSAIV-VGDFVVLGCYSGGLYF 77 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEEeehh-----------------h---CceeeeeeEE-ECCEEEEEEccCcEEE
Confidence 34556689999999999999999998764311 1 2233332222 4778999999999999
Q ss_pred EEccCCCccccceeecccccCE-EEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcE
Q 001343 433 YSYAGSNDLRQHSQIDAHVGAV-NDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQF 510 (1096)
Q Consensus 433 wd~~~~~~~~~~~~l~~h~~~v-~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 510 (1096)
.+.++|.....+..+. .| ......+++. ++..|+.|++.+..| .+..++...+...+...+-++.+. + ..
T Consensus 78 l~~~tGs~~w~f~~~~----~vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~-~s 149 (354)
T KOG4649|consen 78 LCVKTGSQIWNFVILE----TVKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-D-GS 149 (354)
T ss_pred EEecchhheeeeeehh----hhccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-C-ce
Confidence 9999997665432221 22 2233456777 899999999999999 888888887644433333344332 2 24
Q ss_pred EEEEECCCeEEEEE
Q 001343 511 IFSTAIDGKIKAWL 524 (1096)
Q Consensus 511 l~s~~~dg~i~iwd 524 (1096)
|+.+...|.+.--.
T Consensus 150 ly~a~t~G~vlavt 163 (354)
T KOG4649|consen 150 LYAAITAGAVLAVT 163 (354)
T ss_pred EEEEeccceEEEEc
Confidence 44555555554333
No 324
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.30 E-value=0.0014 Score=63.89 Aligned_cols=127 Identities=17% Similarity=0.113 Sum_probs=90.5
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC-
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA- 495 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~- 495 (1096)
..+++.|+..+.++--|..+|+.+-.. + -...|.+-+.- -|+ +++.|...|.+++.+ .+|.....+.....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~--i--lg~RiE~sa~v-vgd--fVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEA--I--LGVRIECSAIV-VGD--FVVLGCYSGGLYFLCVKTGSQIWNFVILETV 95 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeeh--h--hCceeeeeeEE-ECC--EEEEEEccCcEEEEEecchhheeeeeehhhh
Confidence 456778888899999999998765431 1 22334333333 355 789999999999999 89988877754322
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcC-CCCEEE
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGSRLF 554 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~ 554 (1096)
.+...+ +.++..+..|+.|++.+..|..+..++.+.+..+....+-++.+ ++...+
T Consensus 96 k~~a~~---d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~ 152 (354)
T KOG4649|consen 96 KVRAQC---DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYA 152 (354)
T ss_pred ccceEE---cCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEE
Confidence 222222 34678999999999999999999999998877777667777777 444433
No 325
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.30 E-value=2.1e-06 Score=59.73 Aligned_cols=39 Identities=31% Similarity=0.545 Sum_probs=37.0
Q ss_pred ceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEe
Q 001343 862 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1096)
Q Consensus 862 ~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~ 901 (1096)
|+++.++.+|.+.|++|+|+| ++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 468899999999999999999 899999999999999997
No 326
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.29 E-value=2e-06 Score=59.87 Aligned_cols=37 Identities=27% Similarity=0.623 Sum_probs=33.1
Q ss_pred ceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 001343 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWE 373 (1096)
Q Consensus 336 ~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd 373 (1096)
++++++. |.+.|++++|+|++. ++++|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 4566666 999999999999998 799999999999997
No 327
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=3.1e-05 Score=86.87 Aligned_cols=182 Identities=16% Similarity=0.143 Sum_probs=128.8
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
..+.++|++++.. ++|-|+.+|.|.+.+....- .+ ...|... ..+|.|++
T Consensus 38 ~~D~is~~av~~~---~~~~GtH~g~v~~~~~~~~~--~~-------------------~~~~s~~------~~~Gey~a 87 (846)
T KOG2066|consen 38 QNDAISCCAVHDK---FFALGTHRGAVYLTTCQGNP--KT-------------------NFDHSSS------ILEGEYVA 87 (846)
T ss_pred hhhHHHHHHhhcc---eeeeccccceEEEEecCCcc--cc-------------------ccccccc------ccCCceEE
Confidence 4567889998753 79999999999999976332 11 2224433 56899999
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC-----CCcEEEEEEeCCCcEEEEE--cCCceE-EEeeCCC
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-----NKLLCVVTCGDDKLIKVWE--LSGRKL-FNFEGHE 494 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d-----~~~~~l~s~s~d~~i~iwd--~~~~~~-~~~~~~~ 494 (1096)
+|+.||.|.|-.+.+.+.... ..-..++.+++++|+ .+ .+++||.-| +.++. .-|+.. ..+..-.
T Consensus 88 sCS~DGkv~I~sl~~~~~~~~----~df~rpiksial~Pd~~~~~sk--~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e 160 (846)
T KOG2066|consen 88 SCSDDGKVVIGSLFTDDEITQ----YDFKRPIKSIALHPDFSRQQSK--QFVSGGMAG-LVLSERNWLGNKDSVVLSEGE 160 (846)
T ss_pred EecCCCcEEEeeccCCcccee----EecCCcceeEEeccchhhhhhh--heeecCcce-EEEehhhhhcCccceeeecCc
Confidence 999999999999888765542 134568999999998 34 689999888 77776 223332 2466678
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCc------EEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW------CTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
++|.+++| .|++++-++.+| |++||..+.+.+......... ...+.|.++.+.++.- ..+|++
T Consensus 161 G~I~~i~W----~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW------~d~v~i 229 (846)
T KOG2066|consen 161 GPIHSIKW----RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGW------GDSVKI 229 (846)
T ss_pred cceEEEEe----cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEec------CCeEEE
Confidence 89999999 446888887666 789999887776655443332 3457777666555443 346777
Q ss_pred EeCC
Q 001343 569 WNES 572 (1096)
Q Consensus 569 wd~~ 572 (1096)
..++
T Consensus 230 ~~I~ 233 (846)
T KOG2066|consen 230 CSIK 233 (846)
T ss_pred EEEe
Confidence 7666
No 328
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.26 E-value=0.00043 Score=76.75 Aligned_cols=299 Identities=15% Similarity=0.171 Sum_probs=153.7
Q ss_pred cCCCCcEEEEE--------eCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001343 353 HPSHQTLLLVG--------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 353 sp~g~~llasg--------~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 424 (1096)
|||++++|+.- +..+.+.|||+.+++... +......+....|||+|+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 68888644422 234678999999876543 11125578889999999999988
Q ss_pred ECCCeEEEEEccCCCccccceeecc-------c---------ccCEEEEEEecCCCcEEEEEEe-CCCcEEEEEcCCceE
Q 001343 425 FTKHLIQLYSYAGSNDLRQHSQIDA-------H---------VGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWELSGRKL 487 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~l~~-------h---------~~~v~~l~~s~d~~~~~l~s~s-~d~~i~iwd~~~~~~ 487 (1096)
. ++.|.+++..++...+. +..| - -+.-..+.||||++ .|+... .+..|..+. +
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~--~la~~~~d~~~v~~~~-----~ 130 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSK--YLAFLRFDEREVPEYP-----L 130 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSS--EEEEEEEE-TTS-EEE-----E
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCC--EEEEEEECCcCCceEE-----e
Confidence 5 57999999877643321 1122 0 11235688999999 455443 233443332 0
Q ss_pred EEeeCCC---CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEe----CCCCcEEEEEEcCCCCEEEEEeec
Q 001343 488 FNFEGHE---APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYD----APGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 488 ~~~~~~~---~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~----~~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
....... -.+..+.+-..++. . ..-.+.++|+.+++... ... .....+..+.|.++++.++..-.+
T Consensus 131 ~~~~~~~~~yp~~~~~~YPk~G~~--n----p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~n 204 (353)
T PF00930_consen 131 PDYSPPDSQYPEVESIRYPKAGDP--N----PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLN 204 (353)
T ss_dssp EEESSSTESS-EEEEEE--BTTS---------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCccccCCcccccccCCCCCc--C----CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcc
Confidence 0001111 12333333111111 1 11135567777665532 211 234478999999999955554444
Q ss_pred cCC-CCeEEEEeCCCCeeeEEEcCcCccc---eEEEEEe-CCCCEEEE-EEcCC--eEEEEeCCCCeEEEEeecCCCCCC
Q 001343 560 KDG-DSFLVEWNESEGTIKRTYAGFRKKS---NGVVQFD-TTQNHFLA-VGEDS--QIKFWDMDNVNILTSTDAEGGLPN 631 (1096)
Q Consensus 560 ~~~-~~~i~iwd~~~~~~~~~~~~~~~~~---i~~~~~~-~~~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1096)
+++ ...+.+.|..++............- .....+. +++..++. ...+| .|++++...+... .+.... -.
T Consensus 205 R~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~--~~ 281 (353)
T PF00930_consen 205 RDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGD--WE 281 (353)
T ss_dssp TTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SS--S-
T ss_pred cCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCc--ee
Confidence 432 3456677887766544443322211 1234444 66655444 44566 4666676666644 333222 25
Q ss_pred cc-EEEEeCCCCEEE-EEECC--Cc--EEEEEcC-CCccccccccCCCcccccCcceeEEeecCCCeEEecCC
Q 001343 632 LP-RLRFSKEGNLLA-VTTAD--NG--FKILANA-IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (1096)
Q Consensus 632 v~-~~~~s~~~~~l~-~~~~d--g~--i~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s 697 (1096)
|. -+.++++++.|+ ++..+ +. +..-++. .+ ..+.+....... ..+.|||+|++++...+
T Consensus 282 V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~--~~~~LT~~~~~~-----~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 282 VTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG--EPKCLTCEDGDH-----YSASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT--EEEESSTTSSTT-----EEEEE-TTSSEEEEEEE
T ss_pred ecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC--CeEeccCCCCCc-----eEEEECCCCCEEEEEEc
Confidence 64 467888776655 44432 23 4444454 22 233333222111 46899999999865543
No 329
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00022 Score=80.87 Aligned_cols=204 Identities=13% Similarity=0.167 Sum_probs=132.5
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCC-EEEEEEcCCCCEEEEEECCC-
Q 001343 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS-VSRVAWSPDGNYVGVAFTKH- 428 (1096)
Q Consensus 351 ~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~spd~~~l~s~~~dg- 428 (1096)
+|++.+. .+|.|+.+|.|.+.+-. -+.+.. ++.+... |..+-...+..+|++.+.|+
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~s-~~~~~~-------------------fqa~~~siv~~L~~~~~~~~L~sv~Ed~~ 88 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNSS-FQLIRG-------------------FQAYEQSIVQFLYILNKQNFLFSVGEDEQ 88 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEeccc-ceeeeh-------------------heecchhhhhHhhcccCceEEEEEeecCC
Confidence 3566666 69999999999888742 111111 3445445 44444444457888877664
Q ss_pred ----eEEEEEccCCC------ccccceee----cccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE---c--CCceEEE
Q 001343 429 ----LIQLYSYAGSN------DLRQHSQI----DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE---L--SGRKLFN 489 (1096)
Q Consensus 429 ----~i~vwd~~~~~------~~~~~~~l----~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd---~--~~~~~~~ 489 (1096)
.++||+++.-+ ++...+.+ .....++.+++.+.+-+ .+|.|-.||.|..+. . .|....-
T Consensus 89 ~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 89 GNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK--TIVCGFTNGLVICYKGDILRDRGSRQDY 166 (933)
T ss_pred CCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc--EEEEEecCcEEEEEcCcchhccccceee
Confidence 58999987432 22111111 12356789999999977 899999999999985 1 2222222
Q ss_pred eeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
......+|+.+.+.. ++..++-+.....|.+|.+....+.. .+..++....|..+++....+++++ ...+.+
T Consensus 167 ~~~~~~pITgL~~~~--d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-----~e~l~f 239 (933)
T KOG2114|consen 167 SHRGKEPITGLALRS--DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-----SEFLYF 239 (933)
T ss_pred eccCCCCceeeEEec--CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-----CceEEE
Confidence 233467899999965 44443344445678899988555333 4677777899999988777566665 668999
Q ss_pred EeCCCCeeeEEEc-CcC
Q 001343 569 WNESEGTIKRTYA-GFR 584 (1096)
Q Consensus 569 wd~~~~~~~~~~~-~~~ 584 (1096)
|+......-..|. ++.
T Consensus 240 Y~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 240 YDSDGRGPCFAFEVGEK 256 (933)
T ss_pred EcCCCcceeeeecCCCe
Confidence 9988666666665 443
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=1.8e-05 Score=88.73 Aligned_cols=190 Identities=17% Similarity=0.215 Sum_probs=129.5
Q ss_pred CCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeee
Q 001343 831 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCV 909 (1096)
Q Consensus 831 ~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~ 909 (1096)
...++|+++ .++++|.|. +|.|++++. .|.. .+...|... .. +|.++++++.||+|.|-.+-+++
T Consensus 39 ~D~is~~av--~~~~~~~GtH~g~v~~~~~-~~~~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~--- 104 (846)
T KOG2066|consen 39 NDAISCCAV--HDKFFALGTHRGAVYLTTC-QGNP-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDD--- 104 (846)
T ss_pred hhHHHHHHh--hcceeeeccccceEEEEec-CCcc-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCc---
Confidence 466777777 467999999 799999997 4444 444455544 44 89999999999999999888776
Q ss_pred eeccccccccceeeecCCCCCCCCCceEEEecC-----CcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEe
Q 001343 910 WSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD-----QVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYS 984 (1096)
Q Consensus 910 w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~d-----g~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s 984 (1096)
.....+-+ ..+.+++++|| .+.+++|.+..+.++.-.=.........+ ...++|.++.|
T Consensus 105 ------------~~~~~df~--rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~-~~eG~I~~i~W- 168 (846)
T KOG2066|consen 105 ------------EITQYDFK--RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLS-EGEGPIHSIKW- 168 (846)
T ss_pred ------------cceeEecC--CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeee-cCccceEEEEe-
Confidence 11122222 27899999999 45777743333766654311111111111 12889999998
Q ss_pred eCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCC
Q 001343 985 CNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1061 (1096)
Q Consensus 985 ~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~ 1061 (1096)
.|.++|=++.+| |+|||..+.+.+..+.++...+.. ..++..+.|.+ ...|+.| ...+|+|..|..
T Consensus 169 -~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~------e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 169 -RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRP------ELFPPHLHWQD--EDRLVIG-WGDSVKICSIKK 234 (846)
T ss_pred -cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCc------ccCCCceEecC--CCeEEEe-cCCeEEEEEEec
Confidence 677888776665 999999999877776655533322 45555689986 5666665 677999999983
No 331
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=0.0001 Score=75.92 Aligned_cols=244 Identities=13% Similarity=0.137 Sum_probs=138.3
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC-E
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-Y 420 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~ 420 (1096)
.|+..|..++|||...-|+..++.+.+|.|.|+++...+.. +..| ..+++++|.-|.. +
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDLDERHV 250 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeeccCCcce
Confidence 38889999999999887888999999999999998776643 3334 7899999998755 5
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEe------cCCCcEEEEEEeCCCcEEEEEc---CCceEEEee
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA------YPNKLLCVVTCGDDKLIKVWEL---SGRKLFNFE 491 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s------~d~~~~~l~s~s~d~~i~iwd~---~~~~~~~~~ 491 (1096)
|..|..+|.|.|||+...+.......-.-...+|..++.. +.|. +++..+.+ ...|+. .+.....++
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt~--l~f~ei~~s~~~~p~vle 326 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALTV--LQFYEIVFSAECLPCVLE 326 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeehh--hhhhhhhccccCCCcccc
Confidence 6677788999999998655433211111223345444432 3343 44444433 445661 122222121
Q ss_pred -CCCCCeEEEEeeecCCCcEEEEEECCCe------EEE-EEcCCCCeeeEE-eCC-CC------cEEEEEEcCCCCEEEE
Q 001343 492 -GHEAPVYSICPHHKENIQFIFSTAIDGK------IKA-WLYDTMGSRVDY-DAP-GH------WCTTMLYSADGSRLFS 555 (1096)
Q Consensus 492 -~~~~~v~~~~~~~~~~~~~l~s~~~dg~------i~i-wd~~~~~~~~~~-~~~-~~------~i~~l~~s~~~~~l~~ 555 (1096)
+..+...++..++..+ ..|++.-.+.+ |-. -|...+..+... ..+ +. .-..+.-.++.++++.
T Consensus 327 le~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~ 405 (463)
T KOG1645|consen 327 LEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVV 405 (463)
T ss_pred cCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEE
Confidence 2244555555554332 34444332110 000 011112111110 111 11 1112222355566665
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEe-CCCCEEEEEEcCCeEEEEeCC
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVGEDSQIKFWDMD 615 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~iwd~~ 615 (1096)
.+. ..+.+.+||..+++.++++.... ++..++.. -++.-++..-.|..++||..+
T Consensus 406 ~gd---~tn~lil~D~~s~evvQ~l~~~e--pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 406 VGD---STNELILQDPHSFEVVQTLALSE--PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred ecC---CcceeEEeccchhheeeecccCc--ceeecceeecCCcchhhheecceEEEEecC
Confidence 543 37899999999999999988752 56555543 344444444445678887654
No 332
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.20 E-value=0.00031 Score=82.84 Aligned_cols=243 Identities=10% Similarity=0.078 Sum_probs=145.3
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCc
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 485 (1096)
...|.++.|-.++.-++.+..+|.|.+-|.++.... ....-...|.+++|+||++ .++..+.++++.+-+.+-.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e----ivg~vd~GI~aaswS~Dee--~l~liT~~~tll~mT~~f~ 141 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE----IVGNVDNGISAASWSPDEE--LLALITGRQTLLFMTKDFE 141 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee----eeeeccCceEEEeecCCCc--EEEEEeCCcEEEEEecccc
Confidence 468999999999999999999999999988875432 2334567899999999999 6777777778777554433
Q ss_pred eEEEeeCC-----CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 486 KLFNFEGH-----EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 486 ~~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
++..-.-+ .+....+-|-... .=+-|+ .|.....+....+...........=+++.|--||.++++.....
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrke---Tqfrgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~ 217 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKE---TQFRGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVES 217 (1265)
T ss_pred chhccccccccccccccceecccccc---eeeecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEec
Confidence 33221111 1111222221110 011111 11111111100000000001112335789999999998855433
Q ss_pred CCC-CeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE---cCCeEEEEeCCC---CeEEEEeecCCCCCCcc
Q 001343 561 DGD-SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG---EDSQIKFWDMDN---VNILTSTDAEGGLPNLP 633 (1096)
Q Consensus 561 ~~~-~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~---~~~~~~~~~~~~~~~v~ 633 (1096)
..+ ..|++||-+ |.+-.+-... ...-.+++|-|.|..+++.. .|+.|.+|..+. |+....... ....|.
T Consensus 218 ~~~~RkirV~drE-g~Lns~se~~-~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~--de~~ve 293 (1265)
T KOG1920|consen 218 ETGTRKIRVYDRE-GALNSTSEPV-EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPL--DEKEVE 293 (1265)
T ss_pred cCCceeEEEeccc-chhhcccCcc-cccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcc--cccchh
Confidence 334 899999977 4433222222 22445689999999988854 566899998654 222222222 222589
Q ss_pred EEEEeCCCCEEEE---EECCCcEEEEEcCCCc
Q 001343 634 RLRFSKEGNLLAV---TTADNGFKILANAIGL 662 (1096)
Q Consensus 634 ~~~~s~~~~~l~~---~~~dg~i~iwd~~~~~ 662 (1096)
.++|+.++..||+ ......|++|-..+..
T Consensus 294 ~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 294 ELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 9999999999998 4445559999987763
No 333
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00035 Score=79.30 Aligned_cols=202 Identities=16% Similarity=0.237 Sum_probs=128.5
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCc-----EEEEE-
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-----IKVWE- 481 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~-----i~iwd- 481 (1096)
.|. +|++.+..+|.|+.+|.|.+.+-.- +.++ .++.+...|...-+.-+++. +|++.+.|+. ++|||
T Consensus 27 ~is--c~~s~~~~vvigt~~G~V~~Ln~s~-~~~~---~fqa~~~siv~~L~~~~~~~-~L~sv~Ed~~~np~llkiw~l 99 (933)
T KOG2114|consen 27 AIS--CCSSSTGSVVIGTADGRVVILNSSF-QLIR---GFQAYEQSIVQFLYILNKQN-FLFSVGEDEQGNPVLLKIWDL 99 (933)
T ss_pred cee--EEcCCCceEEEeeccccEEEecccc-eeee---hheecchhhhhHhhcccCce-EEEEEeecCCCCceEEEEecc
Confidence 444 4678899999999999988876332 1112 46666666433344444433 7888777754 89999
Q ss_pred c---CCc---eEE--EeeC-----CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcC---CCCeeeEE-eCCCCcEEEE
Q 001343 482 L---SGR---KLF--NFEG-----HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD---TMGSRVDY-DAPGHWCTTM 544 (1096)
Q Consensus 482 ~---~~~---~~~--~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~-~~~~~~i~~l 544 (1096)
. .++ ++. .+.. ...++.+++++. +-..+++|-.+|.|..+.-+ .......+ .....+|+.+
T Consensus 100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~--~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL 177 (933)
T KOG2114|consen 100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE--DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGL 177 (933)
T ss_pred cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc--cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceee
Confidence 2 122 231 1222 245678888865 45789999999999988422 11122222 2334589999
Q ss_pred EEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEE-EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001343 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT-YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (1096)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1096)
++..+++.++.+.+ ...|.+|.+....+... +..+ +....|..+++....+++++. ..+++|+.+...+-..+
T Consensus 178 ~~~~d~~s~lFv~T----t~~V~~y~l~gr~p~~~~ld~~-G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 178 ALRSDGKSVLFVAT----TEQVMLYSLSGRTPSLKVLDNN-GISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAF 251 (933)
T ss_pred EEecCCceeEEEEe----cceeEEEEecCCCcceeeeccC-CccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeee
Confidence 99999988443333 66888998884443333 4444 447888888876664666554 47999998865555555
Q ss_pred e
Q 001343 624 D 624 (1096)
Q Consensus 624 ~ 624 (1096)
.
T Consensus 252 ~ 252 (933)
T KOG2114|consen 252 E 252 (933)
T ss_pred c
Confidence 4
No 334
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.18 E-value=0.00033 Score=77.67 Aligned_cols=146 Identities=15% Similarity=0.140 Sum_probs=83.2
Q ss_pred cCCCeeeeeecCCCc-EEEEec--C-C--eEEEEEcccceEEEeec----CCCCCeeEEEEe-cCCCcEEEEeeCCCeEE
Q 001343 830 LEEAVPCIALSKNDS-YVMSAT--G-G--KISLFNMMTFKVMTTFM----SPPPASTFLAFH-PQDNNIIAIGTEDSTIH 898 (1096)
Q Consensus 830 ~~~~v~~l~~s~dg~-~la~~~--d-g--~v~iwd~~~~~~~~~~~----~h~~~i~~l~~s-~~d~~~l~s~~~dg~i~ 898 (1096)
...-+..+.|+++++ +++.-. + . .+.++|..++.+...+. +--..-....|. ++++.+|.....||--+
T Consensus 182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h 261 (353)
T PF00930_consen 182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH 261 (353)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence 355688899999998 444333 2 2 27777887765433222 111223356665 54666777777888777
Q ss_pred EEeeccceeeeeeccccccccceeeecCCCCCCCCCce-EEEecCCcEEEE-Ee-----cceEEEEEcc-cceecccccc
Q 001343 899 IYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTR-VQFNADQVRMLV-VH-----ETQLAIYDAS-KMERIRQWTP 970 (1096)
Q Consensus 899 iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~-v~fs~dg~~l~~-~~-----d~~i~iwd~~-~~~~~~~~~~ 970 (1096)
||-+.... ....+.-.|.- .|.. +.+++++..+.. +. ...|...++. .++ +..+..
T Consensus 262 ly~~~~~~-------------~~~~~lT~G~~--~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~-~~~LT~ 325 (353)
T PF00930_consen 262 LYLYDLDG-------------GKPRQLTSGDW--EVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE-PKCLTC 325 (353)
T ss_dssp EEEEETTS-------------SEEEESS-SSS---EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE-EEESST
T ss_pred EEEEcccc-------------cceeccccCce--eecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC-eEeccC
Confidence 77665433 11223333332 4544 678888887776 43 3356666777 444 344443
Q ss_pred CCCCCCCceEEEEeeCCcEEEEEe
Q 001343 971 QDALSAPISCAVYSCNSQLVFATF 994 (1096)
Q Consensus 971 ~~~~~~~i~~l~~s~dg~~la~~~ 994 (1096)
. ...-..+.|||+|++++...
T Consensus 326 ~---~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 326 E---DGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp T---SSTTEEEEE-TTSSEEEEEE
T ss_pred C---CCCceEEEECCCCCEEEEEE
Confidence 2 11126999999999977544
No 335
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.17 E-value=0.00062 Score=75.04 Aligned_cols=295 Identities=14% Similarity=0.145 Sum_probs=141.4
Q ss_pred cEEEEEEecCCceEEEeecCCeEEEeeccCCccCC-CCceee-----------ecCccccc--------cCccccccccc
Q 001343 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP-SGKATA-----------SAVPQHWL--------PSSGLLMANDV 825 (1096)
Q Consensus 766 ~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~-~g~~~~-----------~~~i~~w~--------~~~~~~~~~~~ 825 (1096)
.|+.+.|+++...|+++...|.|-+|++..+.... ....-. ...-.+-| +..|..-...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 57899999998889999999999999997764432 000000 00111111 11222111122
Q ss_pred cCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEe--ecC------CCCCeeEEEEec----CCC---cEEE
Q 001343 826 AGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTT--FMS------PPPASTFLAFHP----QDN---NIIA 889 (1096)
Q Consensus 826 ~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~--~~~------h~~~i~~l~~s~----~d~---~~l~ 889 (1096)
.. ..+.|++++.|.=| ++|.|. +|.+.|.|++....+.. +.. ....++++.|+- +|+ -.|+
T Consensus 83 ~~--~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DA--KQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp -----S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred ec--cCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 22 47899999998554 889999 69999999988776654 222 234688888862 133 4788
Q ss_pred EeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEE-EecC---------------------CcEEE
Q 001343 890 IGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQ-FNAD---------------------QVRML 947 (1096)
Q Consensus 890 s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~-fs~d---------------------g~~l~ 947 (1096)
+|+..|.+.+|.+.-...--|....... ...+.. .+..+. |+.+ ..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~--------~~~~~~-~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGA--------TTNHDS-PILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEE--------E--SS-----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeec--------cccCCC-ceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 9999999999998632101122211111 011111 222222 2111 11555
Q ss_pred EEecceEEEEEcccceeccccccCCCCCCCceEEEEe-----eCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCC
Q 001343 948 VVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYS-----CNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPS 1022 (1096)
Q Consensus 948 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s-----~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1022 (1096)
++.+..++++...+.+..+..... .-....+.+- ..+..|++-..+|.|++|.+...+.+....... .-
T Consensus 231 vvSe~~irv~~~~~~k~~~K~~~~---~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~---~~ 304 (395)
T PF08596_consen 231 VVSESDIRVFKPPKSKGAHKSFDD---PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPP---PL 304 (395)
T ss_dssp EE-SSEEEEE-TT---EEEEE-SS----EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-----
T ss_pred EEcccceEEEeCCCCcccceeecc---ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCC---cc
Confidence 578999999999888776655422 2233344552 356678888999999999999988665544211 11
Q ss_pred ccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCCCC------ccccCCCCC-CCCCCCCCCCCC
Q 001343 1023 VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEG------KWGVSPPVD-NGILNSRTTSSS 1085 (1096)
Q Consensus 1023 ~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~~------~~~~~~~~~-~~~~~~~~~~~~ 1085 (1096)
+...+. ...+++ +|+.++-.+. ..+.++.+-.... ....+..|+ +-.++++|+.++
T Consensus 305 ---d~~~~~--~ssis~-~Gdi~~~~gp-sE~~l~sv~~~~~~~~~~~~~~~d~L~np~~~ip~rP~~s~ 367 (395)
T PF08596_consen 305 ---DSRRLS--SSSISR-NGDIFYWTGP-SEIQLFSVWGEGRTGSSLLAPPTDTLYNPNLIIPPRPTISN 367 (395)
T ss_dssp ----HHHHT--T-EE-T-TS-EEEE-SS-SEEEEEEEES--------------B---TT----------T
T ss_pred ---cccccc--ccEECC-CCCEEEEeCc-ccEEEEEEEccCCccccccCCCCCeEECCCCCCCCcCccch
Confidence 222333 256777 8887766543 3444444433221 222233443 334666666443
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.15 E-value=0.00083 Score=75.88 Aligned_cols=283 Identities=12% Similarity=0.050 Sum_probs=154.0
Q ss_pred cEEEEEeCCCeEEEEecCCCCeeecccc------eeecccccCcccccccc-cc--CCCCEEEEEEcC-----CCCEEEE
Q 001343 358 TLLLVGSSNGEITLWELAMRDRLVSKPF------KIWDMAACSLPFQASIF-KD--VPISVSRVAWSP-----DGNYVGV 423 (1096)
Q Consensus 358 ~llasg~~dg~I~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~--h~~~V~~l~~sp-----d~~~l~s 423 (1096)
|.+.||+..|.|+|+-+-+++.+...++ .-|-+...+........ .+ ..+......+|- ||+||.+
T Consensus 67 y~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~fi 146 (635)
T PRK02888 67 YGFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFI 146 (635)
T ss_pred EEEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEE
Confidence 4577899999999999999998865221 12222222221111000 00 011122222222 7889988
Q ss_pred EEC-CCeEEEEEccCCCccccceeec-------------ccccCEEE-----EEEecCCCcEEEEEEeCCCcEEEEE-cC
Q 001343 424 AFT-KHLIQLYSYAGSNDLRQHSQID-------------AHVGAVND-----LAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1096)
Q Consensus 424 ~~~-dg~i~vwd~~~~~~~~~~~~l~-------------~h~~~v~~-----l~~s~d~~~~~l~s~s~d~~i~iwd-~~ 483 (1096)
-.. +..|-..+++.-++-+.+ ++. .+++.|.+ +=++|||+. +..+.-..+.+.+.| .+
T Consensus 147 ndk~n~Rvari~l~~~~~~~i~-~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~-l~~~~ey~~~vSvID~et 224 (635)
T PRK02888 147 NDKANTRVARIRLDVMKCDKIT-ELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKD-LDDPKKYRSLFTAVDAET 224 (635)
T ss_pred ecCCCcceEEEECccEeeceeE-eCCCccCccccCccccCCccEEEeCcccccccCCCCCE-eecccceeEEEEEEECcc
Confidence 764 445555555443332211 110 12222221 223455552 222333345666667 55
Q ss_pred CceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC----CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeec
Q 001343 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
.+...++.--. ....+.+++ +|.++++.+.+ +++..-+.........+.... + -.+.++|++....
T Consensus 225 meV~~qV~Vdg-npd~v~~sp--dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~vkdGK~~~V~--- 294 (635)
T PRK02888 225 MEVAWQVMVDG-NLDNVDTDY--DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAVKAGKFKTIG--- 294 (635)
T ss_pred ceEEEEEEeCC-CcccceECC--CCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhhhCCCEEEEC---
Confidence 45544443222 234445544 56677666532 222222222221111111110 0 1334678877653
Q ss_pred cCCCCeEEEEeCCC-----CeeeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeE------------EE
Q 001343 560 KDGDSFLVEWNESE-----GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI------------LT 621 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~------------~~ 621 (1096)
++.|.+.|..+ .+.+..+.... ....+.++|||+++++++ .+.++.|+|+.+.+. ..
T Consensus 295 ---gn~V~VID~~t~~~~~~~v~~yIPVGK--sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vva 369 (635)
T PRK02888 295 ---GSKVPVVDGRKAANAGSALTRYVPVPK--NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVA 369 (635)
T ss_pred ---CCEEEEEECCccccCCcceEEEEECCC--CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEE
Confidence 66899999988 45555555433 456689999999988866 588999999987542 33
Q ss_pred EeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
..... . .....+|.++|+...+-.-|..|..|++..
T Consensus 370 evevG--l-GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 370 EPELG--L-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eeccC--C-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 33331 1 346789999999888889999999999876
No 337
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.11 E-value=5e-06 Score=50.99 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcChHHHHHHHHHhh
Q 001343 6 RELVFLILQFLEEEKFKESVHKLEKES 32 (1096)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~L~~Es 32 (1096)
+++++||.+||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999997
No 338
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.03 E-value=0.00011 Score=83.37 Aligned_cols=184 Identities=13% Similarity=0.128 Sum_probs=137.7
Q ss_pred EEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEE
Q 001343 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 545 (1096)
.++.|+-...+..+| .+++..+...-..+.|.-++. ++.++.+|...|+|.+-|.++.+.+.++..|.+.|..+.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 577788788888889 666666555544445666653 568999999999999999999999999999999887765
Q ss_pred EcCCCCEEEEEeeccC-----CCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCC-Ce
Q 001343 546 YSADGSRLFSCGTSKD-----GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDN-VN 618 (1096)
Q Consensus 546 ~s~~~~~l~~~~~~~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~ 618 (1096)
-.|+.|++||.+.. -|..|++||++..+.+.-+.-+.+. ..+.|.|.- ..+++++..|...+-|..+ +.
T Consensus 225 --v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P--~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 225 --VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP--QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred --ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc--hhhhhcccccceEEEEecccceeeccccccCC
Confidence 46889999987543 3668899999988777666555442 336777753 5678888899999999432 11
Q ss_pred E-EEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 619 I-LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 619 ~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
+ ......+.....+..+.+++++..++.|..+|.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 1 222222222335899999999999999999999999973
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.01 E-value=0.0012 Score=73.82 Aligned_cols=225 Identities=12% Similarity=0.093 Sum_probs=121.3
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+.........+.++|+|++++++ .||.-.|+.... .+. ...+.-...+|.+.++ +|+-...++|.|+.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~---~r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALA---WRN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK 95 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTT---TEE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccC---Ccc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence 33445567899999999999995 467777777322 221 1234556788988554 67777789999986
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
.+.+....+... ..+..+.. |.+|...+. +.|.+||+.+++.+..+... .|..+.|+++|.+++..+
T Consensus 96 n~~~~~~k~i~~~-~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t--- 163 (443)
T PF04053_consen 96 NFKNEVVKSIKLP-FSVEKIFG-----GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT--- 163 (443)
T ss_dssp TTEE-TT-----S-S-EEEEE------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE----
T ss_pred cCccccceEEcCC-cccceEEc-----CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe---
Confidence 544443344321 23444431 456655554 48999999999888877654 389999999999999887
Q ss_pred CCCCeEEEEeCCCC-----------eeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCC
Q 001343 561 DGDSFLVEWNESEG-----------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1096)
+..+++++.... .....+..... .|.+.+|..+ .++..+.. .++. +-.|+.-..... ..
T Consensus 164 --~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~-~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~l-d~- 233 (443)
T PF04053_consen 164 --KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISE-RIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHL-DK- 233 (443)
T ss_dssp --S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S---SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE--SS-
T ss_pred --CCeEEEEEecchhcccccccCchhceEEEEEecc-eeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEc-CC-
Confidence 557777765433 01122211112 5666778655 55555444 6665 334433222222 22
Q ss_pred CCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
++.-+.+.+..+.+.....|+.+..+.+...
T Consensus 234 -~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 234 -PLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp ---EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred -ceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 5677888887788999999999998877543
No 340
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.01 E-value=0.0001 Score=83.80 Aligned_cols=182 Identities=8% Similarity=0.074 Sum_probs=128.5
Q ss_pred CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC
Q 001343 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1096)
Q Consensus 417 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~ 495 (1096)
++..++.|+....+..+|+.+.+..+. ..-..+.|+-|+. +++ .+.+|...|+|.+-| .+.+.++++..|++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~---~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRT---TNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeee---eeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 455677788778888999998776653 2223334666654 456 899999999999999 89999999999999
Q ss_pred CeEEEEeeecCCCcEEEEEEC---------CCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCC-CEEEEEeeccCCCCe
Q 001343 496 PVYSICPHHKENIQFIFSTAI---------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSF 565 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~~~~~~~~ 565 (1096)
.|..+.. .|+.|+++|. |..|++||++....+..+..+-++ .-+.|.|.- ..+++++. .|.
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~----sGq 289 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQ----SGQ 289 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEec----ccc
Confidence 9999876 4568888875 456899999987766544444332 345555643 34555554 777
Q ss_pred EEEEeC---CCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 001343 566 LVEWNE---SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 566 i~iwd~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1096)
..+-|. .+...-.......+..+..+.++++++.++.|..+|.|.+|.-
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 777773 2221111222222335888999999999999999999999973
No 341
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=97.99 E-value=4.8e-06 Score=64.08 Aligned_cols=53 Identities=38% Similarity=0.547 Sum_probs=42.7
Q ss_pred cHHHHHHHHhccCHHHHHHHHcCCCCCCCcccchhhHHHHHHHHHHHhhccCCH
Q 001343 37 NMKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDK 90 (1096)
Q Consensus 37 ~~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~lell~~~~~ 90 (1096)
++..++++|+.|+|+.|+..+...........+ .+.|.|++|+|+|||+.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 367899999999999999999887443322223 39999999999999998764
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.98 E-value=0.003 Score=69.78 Aligned_cols=251 Identities=15% Similarity=0.205 Sum_probs=133.4
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeee------------------cccceeecccccCccc------cccc
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLV------------------SKPFKIWDMAACSLPF------QASI 401 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~------------------~~~~~~~~~~~~~~~~------~~~~ 401 (1096)
.|+++.|.++..- ||+|...|.|.||.+...+.-. ...-++-|+.....+- +..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5899999999774 8899999999999987654321 0122233333222211 1224
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecc------cccCEEEEEEec-----CC-CcEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA------HVGAVNDLAFAY-----PN-KLLCVV 469 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~------h~~~v~~l~~s~-----d~-~~~~l~ 469 (1096)
+....+.|++++.| |=-++|+|+.+|.+.|.|+.....+... .+.. ....|+++.|+- |+ ....++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 55568999999997 6669999999999999999776655431 1222 345788888862 22 124788
Q ss_pred EEeCCCcEEEEE-c-C--CceE----EEeeCCCCCeEEEEeeecCC-------------------CcEEEEEECCCeEEE
Q 001343 470 TCGDDKLIKVWE-L-S--GRKL----FNFEGHEAPVYSICPHHKEN-------------------IQFIFSTAIDGKIKA 522 (1096)
Q Consensus 470 s~s~d~~i~iwd-~-~--~~~~----~~~~~~~~~v~~~~~~~~~~-------------------~~~l~s~~~dg~i~i 522 (1096)
.|...|.+.+|. . . +.-. .....+.++|..+..-...+ -+-++....+..+|+
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 899999999998 3 2 2211 11234667777666321111 022445555788999
Q ss_pred EEcCCCCeeeEEeCCCCcEEEEEEc-----CCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc---cceEEEEEe
Q 001343 523 WLYDTMGSRVDYDAPGHWCTTMLYS-----ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---KSNGVVQFD 594 (1096)
Q Consensus 523 wd~~~~~~~~~~~~~~~~i~~l~~s-----~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---~~i~~~~~~ 594 (1096)
+..-+.+...+.......+..+.+- ..+..|++... +|.++++.+..-+.+..+..... ......+++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9887766655544222234444452 24445555554 99999999999888877765421 122234556
Q ss_pred CCCCEEEEE
Q 001343 595 TTQNHFLAV 603 (1096)
Q Consensus 595 ~~~~~l~~~ 603 (1096)
++|..++-.
T Consensus 316 ~~Gdi~~~~ 324 (395)
T PF08596_consen 316 RNGDIFYWT 324 (395)
T ss_dssp TTS-EEEE-
T ss_pred CCCCEEEEe
Confidence 666644444
No 343
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.96 E-value=0.0055 Score=64.09 Aligned_cols=269 Identities=16% Similarity=0.200 Sum_probs=158.0
Q ss_pred CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC----------CCeEEEEEcc
Q 001343 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT----------KHLIQLYSYA 436 (1096)
Q Consensus 367 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~----------dg~i~vwd~~ 436 (1096)
+.|.|.|..+++.+... ..+-.-.+..|||++.++++.. .-.|.+||..
T Consensus 17 ~rv~viD~d~~k~lGmi---------------------~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~ 75 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMI---------------------DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ 75 (342)
T ss_dssp EEEEEEETTTTEEEEEE---------------------EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred ceEEEEECCCCcEEEEe---------------------ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC
Confidence 47899998888866431 1122334678999999887531 2368999998
Q ss_pred CCCccccceeecc-ccc----CEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcE
Q 001343 437 GSNDLRQHSQIDA-HVG----AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQF 510 (1096)
Q Consensus 437 ~~~~~~~~~~l~~-h~~----~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 510 (1096)
+-.....+ .+.. |.. ....++++.|++.+++.=.+--.+|.|-| ..++.+..+.-. .+..+ .|.++ .-
T Consensus 76 TL~~~~EI-~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~i--yP~~~-~~ 149 (342)
T PF06433_consen 76 TLSPTGEI-EIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLI--YPSGN-RG 149 (342)
T ss_dssp TTEEEEEE-EETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEE--EEEET-TE
T ss_pred cCcccceE-ecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEE--EecCC-Cc
Confidence 86544432 2322 111 22346788888865555566677888889 666666655421 22232 34444 35
Q ss_pred EEEEECCCeEEEEEcCCCCeeeE-----EeCCCCcE-EEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee--eEEEcC
Q 001343 511 IFSTAIDGKIKAWLYDTMGSRVD-----YDAPGHWC-TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--KRTYAG 582 (1096)
Q Consensus 511 l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~i-~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~ 582 (1096)
+.+-|.||.+.-..++....... +.....++ ..-++...+..++..+. +|.|+-.|+..... ...+..
T Consensus 150 F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy----~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 150 FSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY----EGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp EEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBT----TSEEEEEEETTSSEEEEEEEES
T ss_pred eEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEec----CCEEEEEeccCCcccccCcccc
Confidence 78999999999998885443321 11112222 23344444444443443 88888888765542 222221
Q ss_pred cC------c---cceEEEEEeCCCCEEEEEE--------cCC--eEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCC-
Q 001343 583 FR------K---KSNGVVQFDTTQNHFLAVG--------EDS--QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN- 642 (1096)
Q Consensus 583 ~~------~---~~i~~~~~~~~~~~l~~~~--------~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~- 642 (1096)
.. + .....+++++..+.|++.- .|+ .|.++|+.+++.+..+.... .+.+|..+.+.+
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~---~~~Si~Vsqd~~P 302 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH---PIDSIAVSQDDKP 302 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE---EESEEEEESSSS-
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC---ccceEEEccCCCc
Confidence 10 0 1223377887776666632 122 48888999999999998643 578999999664
Q ss_pred EEEEEE-CCCcEEEEEcCCCccccccccC
Q 001343 643 LLAVTT-ADNGFKILANAIGLRSLRAVEN 670 (1096)
Q Consensus 643 ~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 670 (1096)
+|++.+ .++.+.+||..++ +.++.+..
T Consensus 303 ~L~~~~~~~~~l~v~D~~tG-k~~~~~~~ 330 (342)
T PF06433_consen 303 LLYALSAGDGTLDVYDAATG-KLVRSIEQ 330 (342)
T ss_dssp EEEEEETTTTEEEEEETTT---EEEEE--
T ss_pred EEEEEcCCCCeEEEEeCcCC-cEEeehhc
Confidence 665544 5789999999998 55555543
No 344
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.94 E-value=1.4e-05 Score=53.45 Aligned_cols=32 Identities=38% Similarity=0.546 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHHHHcChHHHHHHHHHhhCCC
Q 001343 4 LSRELVFLILQFLEEEKFKESVHKLEKESGFF 35 (1096)
Q Consensus 4 ~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1096)
.+.++.++|+|||...||..|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 46789999999999999999999999999975
No 345
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.91 E-value=0.0079 Score=69.77 Aligned_cols=274 Identities=14% Similarity=0.092 Sum_probs=156.0
Q ss_pred EEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEE--EEEEcCCCCEEEEEECCCeEEEEEccC
Q 001343 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS--RVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (1096)
Q Consensus 360 lasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--~l~~spd~~~l~s~~~dg~i~vwd~~~ 437 (1096)
+..++.++.|.-.|..+|+.+-+.... .. ...+...+. .++.. ++..++.++.++.|.-+|.++
T Consensus 64 vy~~~~~g~l~AlD~~tG~~~W~~~~~-------~~------~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~T 129 (488)
T cd00216 64 MYFTTSHSALFALDAATGKVLWRYDPK-------LP------ADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAET 129 (488)
T ss_pred EEEeCCCCcEEEEECCCChhhceeCCC-------CC------ccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCC
Confidence 555677899999999999876432111 00 000000010 01111 236777888899999999999
Q ss_pred CCccccceeecccc---cCEE-EEEEecCCCcEEEEEEe---------CCCcEEEEE-cCCceEEEeeCCCCC-------
Q 001343 438 SNDLRQHSQIDAHV---GAVN-DLAFAYPNKLLCVVTCG---------DDKLIKVWE-LSGRKLFNFEGHEAP------- 496 (1096)
Q Consensus 438 ~~~~~~~~~l~~h~---~~v~-~l~~s~d~~~~~l~s~s---------~d~~i~iwd-~~~~~~~~~~~~~~~------- 496 (1096)
|+.+-... +..+. ..+. ...+. + . .++.++ .++.+...| .+|+.+..+......
T Consensus 130 G~~~W~~~-~~~~~~~~~~i~ssP~v~-~-~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~ 204 (488)
T cd00216 130 GKQVWKFG-NNDQVPPGYTMTGAPTIV-K-K--LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTW 204 (488)
T ss_pred CCEeeeec-CCCCcCcceEecCCCEEE-C-C--EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCC
Confidence 98764321 22210 0011 11222 2 2 344443 467899999 899988776542110
Q ss_pred -------------eE-EEEeeecCCCcEEEEEECCC------------------eEEEEEcCCCCeeeEEeCCCCcEE--
Q 001343 497 -------------VY-SICPHHKENIQFIFSTAIDG------------------KIKAWLYDTMGSRVDYDAPGHWCT-- 542 (1096)
Q Consensus 497 -------------v~-~~~~~~~~~~~~l~s~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~i~-- 542 (1096)
+. +.++. ..+..++.++.++ .|.-+|..+++....+........
T Consensus 205 ~~~~~~~~~~g~~vw~~pa~d--~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~ 282 (488)
T cd00216 205 GPDRQMWGPGGGTSWASPTYD--PKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDY 282 (488)
T ss_pred CCCcceecCCCCCccCCeeEe--CCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccc
Confidence 11 11221 1235677777665 788899999999887653322111
Q ss_pred ----EEEEc----CCCC---EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEE--------
Q 001343 543 ----TMLYS----ADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-------- 603 (1096)
Q Consensus 543 ----~l~~s----~~~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-------- 603 (1096)
...+. -++. .+++++. ++.++..|.++|+.+-...... ..+..+| ..++.+
T Consensus 283 ~~~s~p~~~~~~~~~g~~~~~V~~g~~----~G~l~ald~~tG~~~W~~~~~~----~~~~~~~--~~vyv~~~~~~~~~ 352 (488)
T cd00216 283 DGPNQPSLADIKPKDGKPVPAIVHAPK----NGFFYVLDRTTGKLISARPEVE----QPMAYDP--GLVYLGAFHIPLGL 352 (488)
T ss_pred ccCCCCeEEeccccCCCeeEEEEEECC----CceEEEEECCCCcEeeEeEeec----cccccCC--ceEEEccccccccC
Confidence 01111 2333 4555554 8899999999999887654321 1122333 333332
Q ss_pred ----------EcCCeEEEEeCCCCeEEEEeecCCCC------CCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccc
Q 001343 604 ----------GEDSQIKFWDMDNVNILTSTDAEGGL------PNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (1096)
Q Consensus 604 ----------~~dg~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 664 (1096)
..+|.+.-.|..+|+.+......... .....-...-.+..+++++.||.|+.+|..+|...
T Consensus 353 ~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 353 PPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred cccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCcee
Confidence 24678999999999988877654110 01111111125578889999999999999999433
No 346
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.89 E-value=0.026 Score=60.40 Aligned_cols=278 Identities=14% Similarity=0.104 Sum_probs=133.6
Q ss_pred EEcCCCCcEEEEEeCCC--eEEEEecCCCCeeecccceeecccccCccccccccccCC-CCEEEEEEcCCCCEEEEEECC
Q 001343 351 DFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYVGVAFTK 427 (1096)
Q Consensus 351 ~fsp~g~~llasg~~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spd~~~l~s~~~d 427 (1096)
+|.+||++||..+..|| .+.+-|+.+++... |.... .......++|+++.++-....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~~ 101 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKNG 101 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEETT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEECC
Confidence 57899998888877676 56666777776543 22221 222246677988988777666
Q ss_pred CeEEEEEccCCCccccceeecccccCEEEEEEe--cCCCcEEEEEEeC----------------------CCcEEEEE-c
Q 001343 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA--YPNKLLCVVTCGD----------------------DKLIKVWE-L 482 (1096)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s--~d~~~~~l~s~s~----------------------d~~i~iwd-~ 482 (1096)
..|+-.|+++.+... .+....+.+-...|. .|+. .++..-. ...|.--| .
T Consensus 102 ~~l~~vdL~T~e~~~---vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 102 RSLRRVDLDTLEERV---VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp TEEEEEETTT--EEE---EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred CeEEEEECCcCcEEE---EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 789889998865432 233345555445664 3444 3332211 11233334 3
Q ss_pred CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC---CC-eEEEEEcCCCCeee-EEeC--CCCcEEEEEEcCCCCEEEE
Q 001343 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DG-KIKAWLYDTMGSRV-DYDA--PGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg-~i~iwd~~~~~~~~-~~~~--~~~~i~~l~~s~~~~~l~~ 555 (1096)
+|+. ..+..-...+..+.|+|.. ..+|.-|-+ +. .-|||-+++..... .+.. ....+.-=-|.+||..+.-
T Consensus 177 tG~~-~~v~~~~~wlgH~~fsP~d-p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 177 TGER-KVVFEDTDWLGHVQFSPTD-PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp T--E-EEEEEESS-EEEEEEETTE-EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCce-eEEEecCccccCcccCCCC-CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 3333 2332244556677787753 344444432 22 23778766443322 2211 2224555678999998876
Q ss_pred Eee-ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC----------------CeEEEEeCCCCe
Q 001343 556 CGT-SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED----------------SQIKFWDMDNVN 618 (1096)
Q Consensus 556 ~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~ 618 (1096)
-+. .+..+..|.-+|+.+++........ .......+++|.+++-=+.| .-|+++++..+.
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~ 331 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGR 331 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTE
T ss_pred EeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCc
Confidence 443 2233567888899888665433321 23335567888877653332 256778887766
Q ss_pred EEEEeecCC--------CCCCccEEEEeCCCCEEEEEE-CCCcEEEEEc
Q 001343 619 ILTSTDAEG--------GLPNLPRLRFSKEGNLLAVTT-ADNGFKILAN 658 (1096)
Q Consensus 619 ~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~ 658 (1096)
......... ....=....|+|||+.++-.+ ..|...||-+
T Consensus 332 ~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 332 FRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 543222110 000124679999998776655 4677666644
No 347
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.88 E-value=0.00014 Score=79.69 Aligned_cols=80 Identities=26% Similarity=0.374 Sum_probs=66.7
Q ss_pred eEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC
Q 001343 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1096)
Q Consensus 337 ~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1096)
.+..+..+..|.|++++|+.+ .|+.|..||+|++||..++.... ..+.-..+.++|+|
T Consensus 252 svtsipL~s~v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~t~~---------------------~ka~~~P~~iaWHp 309 (545)
T PF11768_consen 252 SVTSIPLPSQVICCARSPSED-KLVLGCEDGSIILYDTTRGVTLL---------------------AKAEFIPTLIAWHP 309 (545)
T ss_pred EEEEEecCCcceEEecCcccc-eEEEEecCCeEEEEEcCCCeeee---------------------eeecccceEEEEcC
Confidence 345567999999999999999 58899999999999987764332 22345688999999
Q ss_pred CCCEEEEEECCCeEEEEEccCC
Q 001343 417 DGNYVGVAFTKHLIQLYSYAGS 438 (1096)
Q Consensus 417 d~~~l~s~~~dg~i~vwd~~~~ 438 (1096)
+|..+++|+..|.+.+||+.-+
T Consensus 310 ~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 310 DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CCcEEEEEcCCceEEEEEeecC
Confidence 9999999999999999998643
No 348
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.0001 Score=76.59 Aligned_cols=113 Identities=14% Similarity=0.181 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHhhCCCcc----------HHHHHHHHhccCHHHHHHHHcCCC-CCCCcccchhhH
Q 001343 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN----------MKYFEEKVQAGDWDEVEKYLSGFT-KVDDNRYSMKIF 73 (1096)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~l~-~~~~~~~~~~~~ 73 (1096)
.+.+..+|..++++.|..+.+..|-+|||...+ +..+-+++..|+-.-|++.+..-. .+.+. ...+.
T Consensus 116 ~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE 193 (394)
T KOG2817|consen 116 SQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLE 193 (394)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHH
Confidence 344689999999999999999999999998753 678899999999999999986531 11111 12389
Q ss_pred HHHHHHHHHHhhccCCHH--HHHHHHHhhcccccccCHHHHHHHHHHh
Q 001343 74 FEIRKQKYLEALDRQDKA--KAVDILVNDLKVFSTFNEELFKEITQLL 119 (1096)
Q Consensus 74 ~~l~~~~~lell~~~~~~--~A~~~l~~~l~~~~~~~~~~~~~l~~~~ 119 (1096)
|.|..+.|++++..|... +|+.+.|+.++||...+..+++.|-..+
T Consensus 194 ~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl 241 (394)
T KOG2817|consen 194 FKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSL 241 (394)
T ss_pred HHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 999999999999999888 9999999999999665555566554444
No 349
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.85 E-value=0.021 Score=65.27 Aligned_cols=249 Identities=13% Similarity=0.083 Sum_probs=135.3
Q ss_pred ceEEEEEcCCCCcEEEEEeCCC----eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.+..+++||||++++++-+..| .|+|+|+.+|+.+.. . +... .-..+.|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~-----------------i~~~--~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-G-----------------IENP--KFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-E-----------------EEEE--ESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-c-----------------cccc--ccceEEEeCCCCEE
Confidence 3457889999996554545555 599999999977642 0 1111 11239999999887
Q ss_pred EEEECCC-----------eEEEEEccCCCccccceeecccccC--EEEEEEecCCCcEEEEEEeCCC---cEEEEE-cCC
Q 001343 422 GVAFTKH-----------LIQLYSYAGSNDLRQHSQIDAHVGA--VNDLAFAYPNKLLCVVTCGDDK---LIKVWE-LSG 484 (1096)
Q Consensus 422 ~s~~~dg-----------~i~vwd~~~~~~~~~~~~l~~h~~~--v~~l~~s~d~~~~~l~s~s~d~---~i~iwd-~~~ 484 (1096)
+....+. .|+.|.+.++..-.. ..+...... ...+..++|++. +++...... .+.+.| ..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~-lvfe~~~~~~~~~~~~~s~d~~~-l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDE-LVFEEPDEPFWFVSVSRSKDGRY-LFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG-E-EEEC-TTCTTSEEEEEE-TTSSE-EEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhCe-eEEeecCCCcEEEEEEecCcccE-EEEEEEccccCCeEEEEecccc
Confidence 7665332 377777766543211 123333332 678899999995 333333333 467777 432
Q ss_pred ----ceEEEeeCCCCCeEEEEeeecCCCcEEEEE---ECCCeEEEEEcCCCCe---eeEEeCCCC--cEEEEEEcCCCCE
Q 001343 485 ----RKLFNFEGHEAPVYSICPHHKENIQFIFST---AIDGKIKAWLYDTMGS---RVDYDAPGH--WCTTMLYSADGSR 552 (1096)
Q Consensus 485 ----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~---~~~~~~~~~--~i~~l~~s~~~~~ 552 (1096)
.....+......+....-+. ++.+++.. ...+.|...++..... ...+..+.. .+..+. ..+.+
T Consensus 263 ~~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~ 338 (414)
T PF02897_consen 263 GSPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDY 338 (414)
T ss_dssp TTSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTE
T ss_pred CCCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCE
Confidence 23344443443443333222 22344433 2346777777777663 224444444 344444 44556
Q ss_pred EEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEE--EE--cCCeEEEEeCCCCeEEE
Q 001343 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA--VG--EDSQIKFWDMDNVNILT 621 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~--~dg~i~iwd~~~~~~~~ 621 (1096)
|+.... .++...|+++++..+.....+.......+..+...++++.+.. .+ .-++++.||+.+++...
T Consensus 339 Lvl~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 339 LVLSYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEEEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEEEEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 665543 3346689999998555555555544435555555555554433 22 34678888998876543
No 350
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.82 E-value=0.0033 Score=70.31 Aligned_cols=81 Identities=11% Similarity=0.048 Sum_probs=59.3
Q ss_pred EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
+.+.....+.--+++..+.+++.|+.-|.+++|+...++....-... ....+..+..+++..++|.|+..|.|.++.+.
T Consensus 28 ~~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~-~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 28 QPGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG-ATGITCVRSVSSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred ccccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccC-ccceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence 33433335565677888999999999999999998877655433322 23356677888888999999999999998775
Q ss_pred CC
Q 001343 660 IG 661 (1096)
Q Consensus 660 ~~ 661 (1096)
..
T Consensus 107 ~~ 108 (726)
T KOG3621|consen 107 KE 108 (726)
T ss_pred cc
Confidence 43
No 351
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.79 E-value=0.0011 Score=73.08 Aligned_cols=124 Identities=14% Similarity=0.132 Sum_probs=87.1
Q ss_pred cceEEeecCCCceEEEEEcCCCCcEEEEE----eCCCe----EEEEecCCCCeeecccceeecccccCccccccccccCC
Q 001343 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVG----SSNGE----ITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1096)
Q Consensus 335 ~~~~~~l~h~~~V~~v~fsp~g~~llasg----~~dg~----I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1096)
-+++.....+....++.||-...+.+.|- +.+|. -.+|++..++.... .+ .--...
T Consensus 196 lEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrv---sv-------------tsipL~ 259 (545)
T PF11768_consen 196 LEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRV---SV-------------TSIPLP 259 (545)
T ss_pred EEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEE---EE-------------EEEecC
Confidence 34444455556668888887554444432 23443 34677665443221 11 112367
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+.|.|++++|+.+.|+.|+.||+|.+||...+... +..+.-.++.++|+|+|. ++++|+..|.+.+||
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFD 327 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEE
Confidence 78999999999999999999999999998775322 223455678999999999 999999999999999
No 352
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.78 E-value=0.034 Score=59.54 Aligned_cols=227 Identities=11% Similarity=0.039 Sum_probs=108.5
Q ss_pred EEcCCCCEEEEEEC-C--CeEEEEEccCCCccccceeecccc-cCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceE
Q 001343 413 AWSPDGNYVGVAFT-K--HLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1096)
Q Consensus 413 ~~spd~~~l~s~~~-d--g~i~vwd~~~~~~~~~~~~l~~h~-~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~ 487 (1096)
+|.+||+.|+.++. | ..+.+.|+.+++..+ |.... .......++++++ .++-......++--| .+.+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~~ 115 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEER 115 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--EE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCcEE
Confidence 67889987776654 4 467777888876543 33332 2223566778887 555555567888888 565554
Q ss_pred EEeeCCCCCeEEEEeeecCCCcEEEEEEC----------------------CCeEEEEEcCCCCeeeEEeCCCCcEEEEE
Q 001343 488 FNFEGHEAPVYSICPHHKENIQFIFSTAI----------------------DGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1096)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 545 (1096)
..+......+-...|....++..++-.-. ...|..-|+.+++....+. ....+.-+.
T Consensus 116 ~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~ 194 (386)
T PF14583_consen 116 VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQ 194 (386)
T ss_dssp EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEE
T ss_pred EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcc
Confidence 45555555555556655556555433211 1234445666655444443 455788899
Q ss_pred EcCCCCEEEEEeeccCCCC-eEEEEeCC-CCeeeEEEcCcC-ccceEEEEEeCCCCEEEEEE-----cCCeEEEEeCCCC
Q 001343 546 YSADGSRLFSCGTSKDGDS-FLVEWNES-EGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVG-----EDSQIKFWDMDNV 617 (1096)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~-~i~iwd~~-~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~ 617 (1096)
|+|....++.-+-.+..+. .-+||-+. .+...+.+..+. ...+..=.|.|+|..|..-+ .+..|.-+|..++
T Consensus 195 fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~ 274 (386)
T PF14583_consen 195 FSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG 274 (386)
T ss_dssp EETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT-
T ss_pred cCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC
Confidence 9996655554433221122 12445443 233333333222 22444457899998776533 3446778888887
Q ss_pred eEEEEeecCCCCCCccEEEEeCCCCEEEEEECC
Q 001343 618 NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 618 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
+........ ....+..++||.+++-=+.|
T Consensus 275 ~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 275 ERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 665433332 33455667899888765554
No 353
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.77 E-value=9.5e-06 Score=88.26 Aligned_cols=204 Identities=13% Similarity=0.179 Sum_probs=132.0
Q ss_pred CCceEEEEEcCCCC-cEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCEE
Q 001343 344 GSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYV 421 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~-~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l 421 (1096)
...+.|++++-+.+ -++++|..+|.|-+-.+...... ...+..+|....++++|++ |.+.|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~L 118 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHL 118 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHH
Confidence 45677887766544 58999999999999887653321 1123566888999999999 67788
Q ss_pred EEEE----CCCeEEEEEccCC--Cccccceeecc-cccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCC
Q 001343 422 GVAF----TKHLIQLYSYAGS--NDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE 494 (1096)
Q Consensus 422 ~s~~----~dg~i~vwd~~~~--~~~~~~~~l~~-h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 494 (1096)
|.|- .|..+.|||+.++ .+.... .+.+ -.....+++|..+.+ ++.+|...+.+.++|....+...-.-.+
T Consensus 119 Aagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~svnT 195 (783)
T KOG1008|consen 119 AAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSVNT 195 (783)
T ss_pred HhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhhhh
Confidence 8773 3568999999886 222111 1222 445667899998888 8889999999999993333322222223
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEE-cCCCCeeeEEeCC-----CCcEEEEEEcCCCCE-EEEEeeccCCCCeEE
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWL-YDTMGSRVDYDAP-----GHWCTTMLYSADGSR-LFSCGTSKDGDSFLV 567 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~-----~~~i~~l~~s~~~~~-l~~~~~~~~~~~~i~ 567 (1096)
..+..+.+.|- .+.++++-. ||.|.+|| ..+.+.......+ ...+..++|.|...- +++... ..+.|+
T Consensus 196 k~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIr 270 (783)
T KOG1008|consen 196 KYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIR 270 (783)
T ss_pred hhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEE
Confidence 34555565552 234665554 99999999 4444333322222 225889999986543 334433 277899
Q ss_pred EEeCC
Q 001343 568 EWNES 572 (1096)
Q Consensus 568 iwd~~ 572 (1096)
++|+.
T Consensus 271 lydi~ 275 (783)
T KOG1008|consen 271 LYDIC 275 (783)
T ss_pred Eeccc
Confidence 98875
No 354
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.73 E-value=0.016 Score=59.15 Aligned_cols=190 Identities=12% Similarity=0.131 Sum_probs=111.7
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
...+..++|+|+.+.|+|+....+.|...+. +|+.+...+ +.+ -+..-.|++..++.++++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVLS 81 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-STTEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEECCCEEEEE
Confidence 4469999999987778999888999988886 477765421 333 356888999888888877
Q ss_pred EECCCeEEEEEccCCCcc---ccce--ee---cccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcC----CceEEEe-
Q 001343 424 AFTKHLIQLYSYAGSNDL---RQHS--QI---DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS----GRKLFNF- 490 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~---~~~~--~l---~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~----~~~~~~~- 490 (1096)
--.++.+.++++...... .... .+ ..++..+-.++|.+.++ .|+.+-...-..++... +..+...
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~--~L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN--RLFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTT--EEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCC--EEEEEeCCCChhhEEEccccCccceeecc
Confidence 666899999998443211 1101 11 13556799999999988 45556666666677622 2222111
Q ss_pred -------eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC---------CcEEEEEEcCCCCEEE
Q 001343 491 -------EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------HWCTTMLYSADGSRLF 554 (1096)
Q Consensus 491 -------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~l~~s~~~~~l~ 554 (1096)
......+.++.++|. .+++++.......|..+| ..++.+..+.... .+.-.|+|.++|+..+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred ccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 123445788899876 567888888889999998 4455544444333 2578899999987666
Q ss_pred EE
Q 001343 555 SC 556 (1096)
Q Consensus 555 ~~ 556 (1096)
+.
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 54
No 355
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.71 E-value=0.016 Score=67.30 Aligned_cols=245 Identities=11% Similarity=0.042 Sum_probs=139.5
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC--CCCEEEEEE---------CC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGNYVGVAF---------TK 427 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~l~s~~---------~d 427 (1096)
.++.++.++.|.-+|..+|+.+-.... ..+...-..+.-+| .+..++.++ .+
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~~~W~~~~-----------------~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~ 174 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGKQVWKFGN-----------------NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVR 174 (488)
T ss_pred eEEEecCCCeEEEEECCCCCEeeeecC-----------------CCCcCcceEecCCCEEECCEEEEeccccccccCCCC
Confidence 366778899999999999998743211 01100000011111 123444443 36
Q ss_pred CeEEEEEccCCCccccceeecc----------------cc-cCEE-EEEEecCCCcEEEEEEeCCC--------------
Q 001343 428 HLIQLYSYAGSNDLRQHSQIDA----------------HV-GAVN-DLAFAYPNKLLCVVTCGDDK-------------- 475 (1096)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~l~~----------------h~-~~v~-~l~~s~d~~~~~l~s~s~d~-------------- 475 (1096)
+.+.-+|..+|+.+-....... +. ..|+ ..++.+.+. .++.++.++
T Consensus 175 g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g--~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 175 GALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN--LVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred cEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC--EEEEECCCCCCCccCCccCCCCC
Confidence 7888889988876543211100 00 1111 234444455 566666554
Q ss_pred ----cEEEEE-cCCceEEEeeCCCCCeE------EEEeee--cCCC---cEEEEEECCCeEEEEEcCCCCeeeEEeCCCC
Q 001343 476 ----LIKVWE-LSGRKLFNFEGHEAPVY------SICPHH--KENI---QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539 (1096)
Q Consensus 476 ----~i~iwd-~~~~~~~~~~~~~~~v~------~~~~~~--~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 539 (1096)
.|.-.| .+|+.+..++.-..... ...+.. .-++ ..++.++.+|.+...|.++++.+.......
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~- 331 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE- 331 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec-
Confidence 799999 89999877642111111 001110 0122 267888899999999999999887654321
Q ss_pred cEEEEEEcCCCCEEEEEeec--------------cCCCCeEEEEeCCCCeeeEEEcCcCc-------cceEEEEEeCCCC
Q 001343 540 WCTTMLYSADGSRLFSCGTS--------------KDGDSFLVEWNESEGTIKRTYAGFRK-------KSNGVVQFDTTQN 598 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~~--------------~~~~~~i~iwd~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~ 598 (1096)
..++.+| ..++..... ...++.+.-.|..+|+.+-+...... .....-.....+.
T Consensus 332 --~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~ 407 (488)
T cd00216 332 --QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGN 407 (488)
T ss_pred --cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCC
Confidence 1233334 233332110 11257888899999988776654310 0110001112457
Q ss_pred EEEEEEcCCeEEEEeCCCCeEEEEeecCC
Q 001343 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (1096)
Q Consensus 599 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (1096)
.+++++.||.|+.+|.++|+.+...+...
T Consensus 408 ~v~~g~~dG~l~ald~~tG~~lW~~~~~~ 436 (488)
T cd00216 408 LVFAGAADGYFRAFDATTGKELWKFRTPS 436 (488)
T ss_pred eEEEECCCCeEEEEECCCCceeeEEECCC
Confidence 88899999999999999999998887643
No 356
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.63 E-value=0.028 Score=56.08 Aligned_cols=265 Identities=14% Similarity=0.114 Sum_probs=142.7
Q ss_pred EEEEeCCCC-EEEEEEcCCe-EEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC-----CcEEEEEcCCCc
Q 001343 590 VVQFDTTQN-HFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANAIGL 662 (1096)
Q Consensus 590 ~~~~~~~~~-~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 662 (1096)
.++++|.-. -++.+-.-|+ ..++|....+...++........--.=.|||||.+|+..-.| |.|-+||...+.
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 367777543 4555555454 678999888777766544332223334799999999877654 789999998887
Q ss_pred cccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCcccee
Q 001343 663 RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (1096)
Q Consensus 663 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~ 742 (1096)
+..-.+..+.... ..+.+.+||+.+|.....-...- . +... -+=..+..-.+.+.+
T Consensus 152 qrvgE~~t~GiGp-----Hev~lm~DGrtlvvanGGIethp----d-------------fgR~--~lNldsMePSlvlld 207 (366)
T COG3490 152 QRVGEFSTHGIGP-----HEVTLMADGRTLVVANGGIETHP----D-------------FGRT--ELNLDSMEPSLVLLD 207 (366)
T ss_pred ceecccccCCcCc-----ceeEEecCCcEEEEeCCceeccc----c-------------cCcc--ccchhhcCccEEEEe
Confidence 7777777665543 35899999999866543211100 0 0000 000011111222222
Q ss_pred eeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeec-CCeEEEeeccCCccCC-CCceeeecCccccccCcccc
Q 001343 743 LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNP-SGKATASAVPQHWLPSSGLL 820 (1096)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~-~g~~~~~~~i~~w~~~~~~~ 820 (1096)
.. ......+.+++. ..+.-.|+.++..+||. +..++. .|. ..+..| .+.......++..++.....
T Consensus 208 ~a---tG~liekh~Lp~-~l~~lSiRHld~g~dgt-vwfgcQy~G~-------~~d~ppLvg~~~~g~~l~~~~~pee~~ 275 (366)
T COG3490 208 AA---TGNLIEKHTLPA-SLRQLSIRHLDIGRDGT-VWFGCQYRGP-------RNDLPPLVGHFRKGEPLEFLDLPEEQT 275 (366)
T ss_pred cc---ccchhhhccCch-hhhhcceeeeeeCCCCc-EEEEEEeeCC-------CccCCcceeeccCCCcCcccCCCHHHH
Confidence 11 022223334441 12566788888888887 444432 111 111100 01111111222223222211
Q ss_pred ccccccCCCcCCCeeeeeecCCCcEEEEec-C-CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEE
Q 001343 821 MANDVAGVNLEEAVPCIALSKNDSYVMSAT-G-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898 (1096)
Q Consensus 821 ~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-d-g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~ 898 (1096)
.. ....|-+++...+..+++..+ . +...+||..+|..+..-.- .....++-.. .-+++.+.+|.+.
T Consensus 276 ~~-------~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l--~daaGva~~~---~gf~vssg~G~~~ 343 (366)
T COG3490 276 AA-------FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL--PDAAGVAAAK---GGFAVSSGQGRII 343 (366)
T ss_pred HH-------HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc--cccccceecc---CceEEecCCceEE
Confidence 11 234567788887777877776 4 6699999999988765421 1222334333 3466667788888
Q ss_pred EEee
Q 001343 899 IYNV 902 (1096)
Q Consensus 899 iw~~ 902 (1096)
++.-
T Consensus 344 ~~s~ 347 (366)
T COG3490 344 FYSR 347 (366)
T ss_pred eccc
Confidence 8743
No 357
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.59 E-value=0.28 Score=57.26 Aligned_cols=111 Identities=11% Similarity=0.039 Sum_probs=67.1
Q ss_pred cEEEEEECCCeEEEEEcCCCCeeeEEeCCCC-cEE----------EEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCT----------TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~----------~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
..++.++.++.|.-.|..+++.+..+..... .+. .+++ .+..++.++. ++.+.-.|.++|+.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~----dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTL----DARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcC----CCEEEEEECCCCCEE
Confidence 3677777788888888888887776654221 111 1122 1234555554 889999999999998
Q ss_pred EEEcCcCccceEEEEEeC--CCCEEEEEE------cCCeEEEEeCCCCeEEEEeec
Q 001343 578 RTYAGFRKKSNGVVQFDT--TQNHFLAVG------EDSQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~--~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~ 625 (1096)
-.........-..+.-+| .+..++++. .+|.|+-+|..+|+.+.....
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 766532110000011111 133555554 268999999999998877654
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.54 E-value=0.087 Score=59.27 Aligned_cols=106 Identities=13% Similarity=0.171 Sum_probs=63.2
Q ss_pred CCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCC-CCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceee
Q 001343 831 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELC 908 (1096)
Q Consensus 831 ~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h-~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~ 908 (1096)
.+++..|++||+|++||.-. +|.+.|.+..-.+.+..+.-. ......+.|.- +.-.++.- ...+.+.....
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG-~dav~l~~--~~~l~lvg~~~---- 288 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG-NDAVVLSW--EDELLLVGPDG---- 288 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC-CCcEEEEe--CCEEEEECCCC----
Confidence 46799999999999999888 589988886555555555433 34556777776 33222222 23344433211
Q ss_pred eeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEcccceeccccc
Q 001343 909 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWT 969 (1096)
Q Consensus 909 ~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~ 969 (1096)
..+.|.-++..++...-..++|..-+.-+.++.+.
T Consensus 289 --------------------------~~~~~~~~~~~~l~~E~DG~riit~~~~~~l~~Vp 323 (410)
T PF04841_consen 289 --------------------------DSISFWYDGPVILVSEIDGVRIITSTSHEFLQRVP 323 (410)
T ss_pred --------------------------CceEEeccCceEEeccCCceEEEeCCceEEEEECC
Confidence 22445545554444444447777666666655554
No 359
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.54 E-value=0.0073 Score=67.45 Aligned_cols=203 Identities=15% Similarity=0.095 Sum_probs=118.1
Q ss_pred eeecCCCCcceEEeec-CCCceEEEEEcCCCCcEEEEEeCC---CeEEEEecCCCCeeecccceeecccccCcccccccc
Q 001343 327 TWSLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSN---GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1096)
+|-.|.- +...+.+. -...+..-+|+|+++.+....-.. ..+.++++.+++....
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i-------------------- 233 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI-------------------- 233 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee--------------------
Confidence 5555543 44444444 556788899999999644443222 3599999998876532
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEE-CCC--eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 403 KDVPISVSRVAWSPDGNYVGVAF-TKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 403 ~~h~~~V~~l~~spd~~~l~s~~-~dg--~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
..-.+.-..-+|||||++|+.+. .|| .|.++|+.++...+ +..-.+.-+.=.|+|||+. ++++.+..|.-.|
T Consensus 234 ~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I 308 (425)
T COG0823 234 LNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQI 308 (425)
T ss_pred eccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcce
Confidence 11222344568999999988654 455 46777777765332 3333333347789999996 3444555565555
Q ss_pred E--EcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC-CCe--EEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEE
Q 001343 480 W--ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 480 w--d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 554 (1096)
| |.++.....+......-..-.|+| ||.+|+..+. +|. |.+.|+.+..... ..........-.+.++|+.+.
T Consensus 309 ~~~~~~g~~~~riT~~~~~~~~p~~Sp--dG~~i~~~~~~~g~~~i~~~~~~~~~~~~-~lt~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 309 YLYDLEGSQVTRLTFSGGGNSNPVWSP--DGDKIVFESSSGGQWDIDKNDLASGGKIR-ILTSTYLNESPSWAPNGRMIM 385 (425)
T ss_pred EEECCCCCceeEeeccCCCCcCccCCC--CCCEEEEEeccCCceeeEEeccCCCCcEE-EccccccCCCCCcCCCCceEE
Confidence 5 466665555443333222444544 7777777664 344 5555555444322 222222344566778888877
Q ss_pred EEee
Q 001343 555 SCGT 558 (1096)
Q Consensus 555 ~~~~ 558 (1096)
..+.
T Consensus 386 ~~s~ 389 (425)
T COG0823 386 FSSG 389 (425)
T ss_pred Eecc
Confidence 6553
No 360
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.49 E-value=0.11 Score=53.19 Aligned_cols=204 Identities=16% Similarity=0.179 Sum_probs=110.0
Q ss_pred eecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCC-CCCeEEEEeeecCCCcEEEEEECCCeEEEEE
Q 001343 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH-EAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1096)
Q Consensus 446 ~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 524 (1096)
.+.+-...+..++|.|+.+. +++.....+.|...+.+|+.++.+.-. .+..-.+++. +++.++++--.++.+.+++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~t-LfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~--g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGT-LFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYL--GNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp E-TT--S-EEEEEEETTTTE-EEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE---STTEEEEEETTTTEEEEEE
T ss_pred ECCCccCCccccEEcCCCCe-EEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEE--CCCEEEEEEcCCCcEEEEE
Confidence 45566667999999998774 566667778887777889988876533 3456777774 3666666665689999998
Q ss_pred cCCCCe---e---eEEe-----CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC--CCCeee-EEEc-----CcCc
Q 001343 525 YDTMGS---R---VDYD-----APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE--SEGTIK-RTYA-----GFRK 585 (1096)
Q Consensus 525 ~~~~~~---~---~~~~-----~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~--~~~~~~-~~~~-----~~~~ 585 (1096)
+..... . ..+. ..+..+-.++|++.++.++++-. .....|+-++. ...... .... ...-
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE--~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE--RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE--SSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC--CCChhhEEEccccCccceeecccccccccccee
Confidence 843221 1 1111 23446899999999888887754 11233444443 111111 1111 1111
Q ss_pred cceEEEEEeCCCCEEE-EEEcCCeEEEEeCCCCeEEEEeecCCC-------CCCccEEEEeCCCCEEEEEECCCcEEEE
Q 001343 586 KSNGVVQFDTTQNHFL-AVGEDSQIKFWDMDNVNILTSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1096)
Q Consensus 586 ~~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1096)
..+..++++|....++ ....+..|..+| ..|+.+..+..... ....-.|+|.++|++.+++ .-+.+.+|
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 2567789999765554 455778899999 67777776665442 2246789999998665544 44444443
No 361
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.48 E-value=0.21 Score=58.28 Aligned_cols=284 Identities=12% Similarity=0.075 Sum_probs=153.4
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~ 438 (1096)
.+++++.++.|.-.|..+|+.+-+.....- ..... .......-..+++ .+..++.++.|+.+.-.|..+|
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~-----~~~~~---~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TG 140 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLP-----DDVIP---VMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTG 140 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCC-----ccccc---ccccccccccceE--ECCEEEEEcCCCEEEEEECCCC
Confidence 355667788999999999987744221100 00000 0000000001122 2346777888999999999999
Q ss_pred Cccccceeeccccc--CEEEEEEecCCCcEEEEEEe------CCCcEEEEE-cCCceEEEeeCCCC--------------
Q 001343 439 NDLRQHSQIDAHVG--AVNDLAFAYPNKLLCVVTCG------DDKLIKVWE-LSGRKLFNFEGHEA-------------- 495 (1096)
Q Consensus 439 ~~~~~~~~l~~h~~--~v~~l~~s~d~~~~~l~s~s------~d~~i~iwd-~~~~~~~~~~~~~~-------------- 495 (1096)
+.+-... +..+.. .+++--.--++. ++.+. .+|.|..+| .+|+.+..+..-..
T Consensus 141 k~~W~~~-~~~~~~~~~~tssP~v~~g~---Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~ 216 (527)
T TIGR03075 141 KVVWSKK-NGDYKAGYTITAAPLVVKGK---VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGG 216 (527)
T ss_pred CEEeecc-cccccccccccCCcEEECCE---EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccc
Confidence 8765332 111211 122111111343 34433 368999999 89988866532110
Q ss_pred -----------------CeE-EEEeeecCCCcEEEEEECC-----C-----------eEEEEEcCCCCeeeEEeCCCCcE
Q 001343 496 -----------------PVY-SICPHHKENIQFIFSTAID-----G-----------KIKAWLYDTMGSRVDYDAPGHWC 541 (1096)
Q Consensus 496 -----------------~v~-~~~~~~~~~~~~l~s~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~i 541 (1096)
.++ .+++ +++..+++.+..+ + .|.-.|+++++....++...+.+
T Consensus 217 ~~~~~tw~~~~~~~gg~~~W~~~s~--D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~ 294 (527)
T TIGR03075 217 EPGAKTWPGDAWKTGGGATWGTGSY--DPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDE 294 (527)
T ss_pred ccccCCCCCCccccCCCCccCceeE--cCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCC
Confidence 111 1223 2233455554421 2 56667888888887766543322
Q ss_pred ---------EEEEEcCCCC---EEEEEeeccCCCCeEEEEeCCCCeeeEE--------E----cCcCccc----------
Q 001343 542 ---------TTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRT--------Y----AGFRKKS---------- 587 (1096)
Q Consensus 542 ---------~~l~~s~~~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~--------~----~~~~~~~---------- 587 (1096)
.-+.+..+|+ .++.+.. +|.+++.|..+|+.+.. . ......+
T Consensus 295 wD~d~~~~p~l~d~~~~G~~~~~v~~~~K----~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~ 370 (527)
T TIGR03075 295 WDYDGVNEMILFDLKKDGKPRKLLAHADR----NGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSAD 370 (527)
T ss_pred ccccCCCCcEEEEeccCCcEEEEEEEeCC----CceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCC
Confidence 2222334666 4556655 89999999999988621 1 0000000
Q ss_pred ------------------eEEEEEeCCCCEEEEEEc---------------------------------CCeEEEEeCCC
Q 001343 588 ------------------NGVVQFDTTQNHFLAVGE---------------------------------DSQIKFWDMDN 616 (1096)
Q Consensus 588 ------------------i~~~~~~~~~~~l~~~~~---------------------------------dg~i~iwd~~~ 616 (1096)
-...+++|+...++.... -|.|.-+|+.+
T Consensus 371 ~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~t 450 (527)
T TIGR03075 371 GKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPIT 450 (527)
T ss_pred CCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCC
Confidence 011456665555544322 24578888888
Q ss_pred CeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCcccc
Q 001343 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (1096)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 665 (1096)
++.......... ..... ..-.+.+++.++.+|.++.+|..+|+.+.
T Consensus 451 Gk~~W~~~~~~p--~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw 496 (527)
T TIGR03075 451 GKIVWEHKEDFP--LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELW 496 (527)
T ss_pred CceeeEecCCCC--CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence 888776654321 11222 22255577788889999999999995443
No 362
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.45 E-value=0.014 Score=65.52 Aligned_cols=219 Identities=12% Similarity=0.160 Sum_probs=107.0
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
..-....+.++|+|+. +++ ..||.-.|+.....+.. ..+.-...+|++.++ +|
T Consensus 31 ~~~~p~~ls~npngr~-v~V-~g~geY~iyt~~~~r~k------------------------~~G~g~~~vw~~~n~-yA 83 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRF-VLV-CGDGEYEIYTALAWRNK------------------------AFGSGLSFVWSSRNR-YA 83 (443)
T ss_dssp -SS--SEEEE-TTSSE-EEE-EETTEEEEEETTTTEEE------------------------EEEE-SEEEE-TSSE-EE
T ss_pred CCcCCeeEEECCCCCE-EEE-EcCCEEEEEEccCCccc------------------------ccCceeEEEEecCcc-EE
Confidence 4556899999999994 555 35888888884332221 123445678998554 66
Q ss_pred EEECCCeEEEE-EccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEE
Q 001343 423 VAFTKHLIQLY-SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 423 s~~~dg~i~vw-d~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~ 500 (1096)
+-...++|.|+ +.+. +..+.+ .+. ..+..+-. |. +|...+ ++.|.+|| .+++.++.+... +|..+
T Consensus 84 v~~~~~~I~I~kn~~~-~~~k~i-~~~---~~~~~If~---G~--LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V 150 (443)
T PF04053_consen 84 VLESSSTIKIYKNFKN-EVVKSI-KLP---FSVEKIFG---GN--LLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYV 150 (443)
T ss_dssp EE-TTS-EEEEETTEE--TT------S---S-EEEEE----SS--SEEEEE-TTEEEEE-TTT--EEEEESS---E-EEE
T ss_pred EEECCCeEEEEEcCcc-ccceEE-cCC---cccceEEc---Cc--EEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEE
Confidence 66668889996 4432 222211 111 12333332 76 555555 44899999 889999988743 38899
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCC----------CeeeEEeCC-CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEE
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTM----------GSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iw 569 (1096)
.|++ ++.+++..+.+ .+.+++.+.. +........ ...|.+.+|..+ -++.+. ...++.+
T Consensus 151 ~Ws~--~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT------~~~lkYl 220 (443)
T PF04053_consen 151 IWSD--DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTT------SNHLKYL 220 (443)
T ss_dssp EE-T--TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-------TTEEEEE
T ss_pred EEEC--CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEc------CCeEEEE
Confidence 9976 56788777755 5666654432 001222222 456888888766 333332 3355543
Q ss_pred eCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCC
Q 001343 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1096)
Q Consensus 570 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1096)
--.....++.+. .++..+.+.+..+.++....|+.+..+.++
T Consensus 221 ~~Ge~~~i~~ld----~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 221 VNGETGIIAHLD----KPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp ETTEEEEEEE-S----S--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EcCCcceEEEcC----CceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 211111222222 255666666666677777777777666654
No 363
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.44 E-value=0.04 Score=60.68 Aligned_cols=77 Identities=10% Similarity=0.170 Sum_probs=55.3
Q ss_pred cCCCeeeeeecCCCcEEEEecC-CeEEEEEcccceEEEeecCCCCCeeE-EEEecCCC----------------c-EEEE
Q 001343 830 LEEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTF-LAFHPQDN----------------N-IIAI 890 (1096)
Q Consensus 830 ~~~~v~~l~~s~dg~~la~~~d-g~v~iwd~~~~~~~~~~~~h~~~i~~-l~~s~~d~----------------~-~l~s 890 (1096)
....+.+++.+|++++.|+.++ |+|.++|+.++..++.+++-.+.-.. +....... . +++-
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 4566889999999998888765 99999999999999988876544222 11111011 1 3445
Q ss_pred eeCCCeEEEEeeccce
Q 001343 891 GTEDSTIHIYNVRVDE 906 (1096)
Q Consensus 891 ~~~dg~i~iw~~~~~~ 906 (1096)
+-.-|.|.||.+..+.
T Consensus 386 aprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 386 APRRGILEVWSMRQGP 401 (415)
T ss_pred eccCCeEEEEecCCCC
Confidence 6678999999998877
No 364
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.21 Score=55.82 Aligned_cols=267 Identities=12% Similarity=0.113 Sum_probs=166.4
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 424 (1096)
.....+.+.|+|..+.++-.....+.+-+......... ...-...-..++.++++..+...
T Consensus 31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~-------------------~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQS-------------------LSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred CCCceeEEcCccCEEEEEeecCceeeecccccceeeee-------------------ccCCCccccceeeCCCCCeEEEe
Confidence 36778888999865454443333444444431111100 00011345678889988855544
Q ss_pred -ECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe-CCCcEEEEE-cCCceEEEeeCCCCCeEEEE
Q 001343 425 -FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1096)
Q Consensus 425 -~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~ 501 (1096)
..++.|.+.|..+....... ..+. ....++++++++.++++-.. .++++.+.| .+++.+.....-..+ ..++
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~--~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a 166 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSI--PVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVA 166 (381)
T ss_pred cCCCCeEEEEcCcccceeeEe--eecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEE
Confidence 44589999997776554432 1122 67789999999853333332 379999999 788887775544445 7778
Q ss_pred eeecCCCcEEEEE-ECCCeEEEEEcCCCCeee-E---EeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee
Q 001343 502 PHHKENIQFIFST-AIDGKIKAWLYDTMGSRV-D---YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1096)
Q Consensus 502 ~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~-~---~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~ 576 (1096)
+.| +|..++.. ..++.|.+.|........ . ..........+.++++|.++.+.... ..++.+...|..++..
T Consensus 167 ~~p--~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~-~~~~~v~~id~~~~~v 243 (381)
T COG3391 167 VDP--DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG-SGSNNVLKIDTATGNV 243 (381)
T ss_pred ECC--CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc-CCCceEEEEeCCCceE
Confidence 766 55655554 478999999976554442 0 11222345678999999987776541 1136899999988877
Q ss_pred eEE-EcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCC-CCccEEEEeC
Q 001343 577 KRT-YAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFSK 639 (1096)
Q Consensus 577 ~~~-~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~ 639 (1096)
... +..... ....+..+|+|..+.+.. ..+.+.+.|..+............. ..+..+++.+
T Consensus 244 ~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 244 TATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred EEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 765 333332 344588999999988875 4488999999888777765543321 1244444444
No 365
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.42 E-value=0.21 Score=56.21 Aligned_cols=177 Identities=11% Similarity=0.032 Sum_probs=91.5
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcc---ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL---RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~ 482 (1096)
+.|.++.|+.+. .|++...||.+++||+...... .......-....+....+..+|- .+++ .++.+.+-+ .
T Consensus 81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt--~~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLT--GNNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEEC--CCCeEEEEeCc
Confidence 789999999865 4555668999999998643300 00001111122233333333442 3333 355566555 3
Q ss_pred CCc-eEEEe---eCCCC------CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCE
Q 001343 483 SGR-KLFNF---EGHEA------PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR 552 (1096)
Q Consensus 483 ~~~-~~~~~---~~~~~------~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 552 (1096)
... ..+.+ .+... ....+ .....+....+....++.+.+.+-..... ....+++..+++||+|++
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i-~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~ 230 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVI-PLLSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKF 230 (410)
T ss_pred cccchhhccccCCCcccccccccccccc-eEeecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCE
Confidence 322 11111 11000 00111 11122333444445555665443222111 112457999999999999
Q ss_pred EEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCC
Q 001343 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 597 (1096)
++.... ++.+.+.+..-.+....+..........+.|..+.
T Consensus 231 iAl~t~----~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 231 IALFTD----SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred EEEEEC----CCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 998875 78888887665556655555433344556666543
No 366
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.42 E-value=0.011 Score=66.05 Aligned_cols=190 Identities=15% Similarity=0.124 Sum_probs=114.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEE---CC-CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 405 VPISVSRVAWSPDGNYVGVAF---TK-HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~---~d-g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
....+..-+|+|+++.++... .. ..+.++++++++..... . -.+.-..-+|+|||+. ++++...||...||
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~-~---~~g~~~~P~fspDG~~-l~f~~~rdg~~~iy 265 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL-N---FNGNNGAPAFSPDGSK-LAFSSSRDGSPDIY 265 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee-c---cCCccCCccCCCCCCE-EEEEECCCCCccEE
Confidence 445677779999999877552 22 46999999998765422 2 3334456789999997 56667777765555
Q ss_pred --EcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEE-ECCCeEEEEEc--CCCCeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 481 --ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFST-AIDGKIKAWLY--DTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 481 --d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~--~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
|..++.+..+..-.+.-..-.|+| ||+.|+-. +..|.-.||-+ +.... ..+......-..-.++|||++++.
T Consensus 266 ~~dl~~~~~~~Lt~~~gi~~~Ps~sp--dG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 266 LMDLDGKNLPRLTNGFGINTSPSWSP--DGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred EEcCCCCcceecccCCccccCccCCC--CCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEE
Confidence 566665555553333333445555 66666554 45566555544 43333 233333333337789999999998
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEc
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 605 (1096)
.+.. .+.-.|.+.|+.++...+.+.... ....-.+.+++..++..+.
T Consensus 343 ~~~~-~g~~~i~~~~~~~~~~~~~lt~~~--~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 343 ESSS-GGQWDIDKNDLASGGKIRILTSTY--LNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred Eecc-CCceeeEEeccCCCCcEEEccccc--cCCCCCcCCCCceEEEecc
Confidence 8742 223457777776665444443321 2223557778877766543
No 367
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.36 E-value=0.069 Score=53.37 Aligned_cols=248 Identities=10% Similarity=0.140 Sum_probs=138.9
Q ss_pred ceEEeecCCCceEEEEEcCCCCcEEEEEeCCC-eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE
Q 001343 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNG-EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1096)
Q Consensus 336 ~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1096)
+++..+.-...-..++|+|.-.+-++.+-.-| ...++|....+...... .....-+.||. .|
T Consensus 59 k~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-----------s~~~RHfyGHG------vf 121 (366)
T COG3490 59 KIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-----------SQEGRHFYGHG------VF 121 (366)
T ss_pred ceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-----------cccCceeeccc------cc
Confidence 33443333344556888888776566665555 46788988877654200 00112255663 68
Q ss_pred cCCCCEEEEEECC-----CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC----------------
Q 001343 415 SPDGNYVGVAFTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD---------------- 473 (1096)
Q Consensus 415 spd~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~---------------- 473 (1096)
||||.+|...-.| |.|-|||...+ +....++..|.-.-..+.|.+||+ .++.+..
T Consensus 122 s~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGr--tlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 122 SPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGR--TLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred CCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCc--EEEEeCCceecccccCccccchh
Confidence 9999999865333 78999998843 444457888888899999999999 4444321
Q ss_pred --CCcEEEEE-cCCceEEEe--e--CCCCCeEEEEeeecCCCcEEEEEECCCeE-----EEEEcCCCCeeeEEeCC----
Q 001343 474 --DKLIKVWE-LSGRKLFNF--E--GHEAPVYSICPHHKENIQFIFSTAIDGKI-----KAWLYDTMGSRVDYDAP---- 537 (1096)
Q Consensus 474 --d~~i~iwd-~~~~~~~~~--~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i-----~iwd~~~~~~~~~~~~~---- 537 (1096)
.-++.+.| .+|+.+.+. . .+.-.|..++.. .||..++.+-..|.- .+=-...++...-+...
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g--~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~ 275 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIG--RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQT 275 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeeeC--CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHH
Confidence 11233444 455544321 1 223345555542 243333322221110 00001112222212111
Q ss_pred ---CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 001343 538 ---GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 538 ---~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1096)
.+.|-+++.+.+...++..+. ..+...+||..+|..+..-..... .-..+...-+++.+.+|.+.++..
T Consensus 276 ~~~anYigsiA~n~~~glV~lTSP---~GN~~vi~da~tG~vv~~a~l~da-----aGva~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 276 AAFANYIGSIAANRRDGLVALTSP---RGNRAVIWDAATGAVVSEAALPDA-----AGVAAAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred HHHHhhhhheeecccCCeEEEecC---CCCeEEEEEcCCCcEEeccccccc-----ccceeccCceEEecCCceEEeccc
Confidence 225778888877777766654 256788999999988765443221 222334455777777888887743
No 368
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.34 E-value=0.18 Score=53.82 Aligned_cols=229 Identities=11% Similarity=0.113 Sum_probs=129.8
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEE-----
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN----- 489 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~----- 489 (1096)
..++.|+.|+.+| +.+++......... + .+...|..+...++-+ .++.-+ |+.+++++ ..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence 3578999999998 89999833222221 1 2333499999999887 455444 59999999 33222220
Q ss_pred ---------eeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC-----CeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 490 ---------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-----GSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 490 ---------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
-......+...+......+...+......+|.+|.+... .....+... ..+.+++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEE
Confidence 011222344443112223344555555669999887653 223343333 578888888 556766
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCc-----------cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEE--E
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT--S 622 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~ 622 (1096)
+. .....+.|+.++.....+..... .++..+.. +++.+|++. +..-.+.|. .|+... .
T Consensus 154 ~~-----~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GT-----SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred Ee-----CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 65 55688889987766554432211 12333333 334555543 333334444 443333 3
Q ss_pred eecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCC
Q 001343 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP 671 (1096)
Q Consensus 623 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 671 (1096)
+.... .+..+++. ..+|+..+.+ .|.||++.++ +..+.+...
T Consensus 225 i~W~~---~p~~~~~~--~pyli~~~~~-~iEV~~~~~~-~lvQ~i~~~ 266 (275)
T PF00780_consen 225 IQWSS---APQSVAYS--SPYLIAFSSN-SIEVRSLETG-ELVQTIPLP 266 (275)
T ss_pred EEcCC---chhEEEEE--CCEEEEECCC-EEEEEECcCC-cEEEEEECC
Confidence 33322 45566663 3477766654 5999999998 556555543
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.31 E-value=0.11 Score=55.28 Aligned_cols=241 Identities=12% Similarity=0.089 Sum_probs=128.3
Q ss_pred EEeCCCCEEE-EEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccC
Q 001343 592 QFDTTQNHFL-AVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVEN 670 (1096)
Q Consensus 592 ~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 670 (1096)
.|.++...|+ +--..+.|.-|+..+++... +.... .+.++..-..+..|+++.. .+.+++..++.. ...+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~p~---~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~-~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-FPSPG---GFSSGALIDAGGRLIACEH--GVRLLDPDTGGK-ITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EECCC---CcccceeecCCCeEEEEcc--ccEEEeccCCce-eEEecc
Confidence 3556655443 33366778888877554332 22222 2334433334444444432 456667655522 122222
Q ss_pred CCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCC
Q 001343 671 PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSG 750 (1096)
Q Consensus 671 ~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~ 750 (1096)
..........+...+.|+|++.+....... .-.......-.+|.+.. .+
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~----------------------------~~~~~~~~~G~lyr~~p---~g 152 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFD----------------------------LGKSEERPTGSLYRVDP---DG 152 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccc----------------------------cCccccCCcceEEEEcC---CC
Confidence 222222345667888888888755543100 00000001114555541 12
Q ss_pred ceEEEEcCCCCCCcccEEEEEEecCCceEEEeec-CCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCC
Q 001343 751 QCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 829 (1096)
Q Consensus 751 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~ 829 (1096)
.... .+.+ +-..-+.|+||||++.+..+.+ .+.+..|+++.......++ ........
T Consensus 153 ~~~~-l~~~---~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~----------------~~~~~~~~-- 210 (307)
T COG3386 153 GVVR-LLDD---DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR----------------RGFVDFDE-- 210 (307)
T ss_pred CEEE-eecC---cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc----------------ceEEEccC--
Confidence 2222 1112 3445678999999987777766 4777777765311111111 00001111
Q ss_pred cCCCeeeeeecCCCcEEEEec-CC-eEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeC
Q 001343 830 LEEAVPCIALSKNDSYVMSAT-GG-KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893 (1096)
Q Consensus 830 ~~~~v~~l~~s~dg~~la~~~-dg-~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~ 893 (1096)
..+..-.++...+|.+-+++. +| .|.+|+.. |+++..+.-+...+++++|--.+.+.|.+.+.
T Consensus 211 ~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 211 EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 344555688889998886555 43 89999986 99999988887889999995424555554443
No 370
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.27 E-value=0.057 Score=64.07 Aligned_cols=141 Identities=15% Similarity=0.139 Sum_probs=94.1
Q ss_pred CCEEEEE-ECCCeEEEEEccCCCccccceeecccccC-EEEEEEec-----CCCcEEEEEEeCCCcEEEEE--cCCceEE
Q 001343 418 GNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGA-VNDLAFAY-----PNKLLCVVTCGDDKLIKVWE--LSGRKLF 488 (1096)
Q Consensus 418 ~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~l~~h~~~-v~~l~~s~-----d~~~~~l~s~s~d~~i~iwd--~~~~~~~ 488 (1096)
.++|+.- .....|+-.|++.|+.+. ++..|... |..++=.. +.. ..+.|-.++.+..|| ..+..+.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~---eW~~~~~~~v~~~~p~~K~aqlt~e--~tflGls~n~lfriDpR~~~~k~v 567 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVE---EWKVHDDIPVVDIAPDSKFAQLTNE--QTFLGLSDNSLFRIDPRLSGNKLV 567 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEE---EeecCCCcceeEecccccccccCCC--ceEEEECCCceEEeccCCCCCcee
Confidence 3444332 345788999999998877 46555543 55443211 122 345677789999999 5554332
Q ss_pred EeeC----CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCC
Q 001343 489 NFEG----HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1096)
Q Consensus 489 ~~~~----~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~ 564 (1096)
.-.. ......|++- +++| +|++|+.+|.||+||--.......+.+-+.+|..|..+.||+++++.+ +.
T Consensus 568 ~~~~k~Y~~~~~Fs~~aT--t~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-----~t 639 (794)
T PF08553_consen 568 DSQSKQYSSKNNFSCFAT--TEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-----KT 639 (794)
T ss_pred eccccccccCCCceEEEe--cCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-----cc
Confidence 2122 2344666664 3344 899999999999998543333445666678999999999999999877 66
Q ss_pred eEEEEeC
Q 001343 565 FLVEWNE 571 (1096)
Q Consensus 565 ~i~iwd~ 571 (1096)
.|.+++.
T Consensus 640 yLlLi~t 646 (794)
T PF08553_consen 640 YLLLIDT 646 (794)
T ss_pred eEEEEEE
Confidence 7888775
No 371
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.25 E-value=0.24 Score=56.61 Aligned_cols=243 Identities=11% Similarity=0.108 Sum_probs=123.7
Q ss_pred CEEEEEEcCCCCEEEEE-ECCC----eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC--------
Q 001343 408 SVSRVAWSPDGNYVGVA-FTKH----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-------- 474 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~-~~dg----~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d-------- 474 (1096)
.+....+||||++||.+ +..| .|+++|+.+|+.+.. .+... ....+.|.+|++. ++.+...+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 44568999999999866 3333 599999999865542 12211 1223999999984 33443222
Q ss_pred --CcEEEEE-cCCce--EEEeeCCCCCe--EEEEeeecCCCcEEEEEECC----CeEEEEEcCCC----CeeeEEeCC-C
Q 001343 475 --KLIKVWE-LSGRK--LFNFEGHEAPV--YSICPHHKENIQFIFSTAID----GKIKAWLYDTM----GSRVDYDAP-G 538 (1096)
Q Consensus 475 --~~i~iwd-~~~~~--~~~~~~~~~~v--~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~----~~~~~~~~~-~ 538 (1096)
..|+.|. -++.. ...+....... ..+.. +.++++++..... ..+.+.++... .....+... .
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~--s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSR--SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEe--cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 2366776 33322 23444444443 34444 4577777654333 23566676653 223333332 3
Q ss_pred CcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee---eEEEcCcCccceEEEEEeCCCCEEEEE-EcCC--eEEEE
Q 001343 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAV-GEDS--QIKFW 612 (1096)
Q Consensus 539 ~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg--~i~iw 612 (1096)
.....+... +..+...+......+.|...++.+... ...+..+.. .+....+...+++|+.. ..++ .|+++
T Consensus 278 ~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 278 GVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE-DVSLEDVSLFKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp S-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS-SEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC-ceeEEEEEEECCEEEEEEEECCccEEEEE
Confidence 333333333 433333333333467888888877652 324444433 22223333445555554 3444 68899
Q ss_pred eCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEEC----CCcEEEEEcCCC
Q 001343 613 DMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIG 661 (1096)
Q Consensus 613 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~ 661 (1096)
++..+.....+..... +.|..+...+++..+..... -+++..||+.++
T Consensus 355 ~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 355 DLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp ETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred ECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 9984555555554432 24555554555544433222 256777787776
No 372
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.52 Score=52.73 Aligned_cols=240 Identities=14% Similarity=0.129 Sum_probs=154.4
Q ss_pred CEEEEEEcCCCCEEEEEECC-CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc
Q 001343 408 SVSRVAWSPDGNYVGVAFTK-HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~ 485 (1096)
....+...+++..+...... ..+.+.+.. ...... ....-...-..++.++++.. ..++...++.|.+.| ...+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 45667888888655544322 244444443 111111 01111134567888888886 566666679999999 5555
Q ss_pred eEEEeeCCCCCeEEEEeeecCCCcEEEEEEC---CCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCC
Q 001343 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
.+....--. ....+++.+ +++.+.++.. ++++.+.|-.+............+ ..++++|+|+.++.+.. .
T Consensus 108 ~~~~~~vG~-~P~~~~~~~--~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~---~ 180 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVDP--DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNS---D 180 (381)
T ss_pred eeeEeeecc-CCceEEECC--CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEec---C
Confidence 555443222 456677765 4555555544 688888888877777764333334 89999999998887763 3
Q ss_pred CCeEEEEeCCCCeeeE-E----EcCcCccceEEEEEeCCCCEEEEEEcC---CeEEEEeCCCCeEEEEeecCCCCCCccE
Q 001343 563 DSFLVEWNESEGTIKR-T----YAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~-~----~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1096)
++.+.+.|..+....+ . .... .....+.+++++..+++.... +.+...|..++............ ....
T Consensus 181 ~~~v~vi~~~~~~v~~~~~~~~~~~~--~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~ 257 (381)
T COG3391 181 DNTVSVIDTSGNSVVRGSVGSLVGVG--TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRG 257 (381)
T ss_pred CCeEEEEeCCCcceeccccccccccC--CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCc
Confidence 8899999977666553 1 1111 133458899999977765543 58999999988877763222222 4567
Q ss_pred EEEeCCCCEEEEEECC-CcEEEEEcCCC
Q 001343 635 LRFSKEGNLLAVTTAD-NGFKILANAIG 661 (1096)
Q Consensus 635 ~~~s~~~~~l~~~~~d-g~i~iwd~~~~ 661 (1096)
+..+|+|..+.+.... +.+.+.|..+.
T Consensus 258 v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 258 VAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred eeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 8999999998888554 77888877665
No 373
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.23 E-value=0.069 Score=58.46 Aligned_cols=216 Identities=15% Similarity=0.133 Sum_probs=119.1
Q ss_pred CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC----CCEEEEEEC----------CCeEEE
Q 001343 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----GNYVGVAFT----------KHLIQL 432 (1096)
Q Consensus 367 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----~~~l~s~~~----------dg~i~v 432 (1096)
+.|+|.|..+.+.+.+..+. -..+-..+..+.+..+ ..+|++|+. .|.|.+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~---------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v 66 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE---------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV 66 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE---------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred cEEEEEeCCCCeEEEEEECC---------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence 36788888877766542221 0111123334444433 568887753 288999
Q ss_pred EEccCC----CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc-eEEE-eeCCCCCeEEEEeeec
Q 001343 433 YSYAGS----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLFN-FEGHEAPVYSICPHHK 505 (1096)
Q Consensus 433 wd~~~~----~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~-~~~~-~~~~~~~v~~~~~~~~ 505 (1096)
+++... ..++... -....++|++++-. .+ .|+.+. .+.|.+|+ ...+ .... +......+.++...
T Consensus 67 ~~i~~~~~~~~~l~~i~-~~~~~g~V~ai~~~-~~---~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-- 138 (321)
T PF03178_consen 67 FEISESPENNFKLKLIH-STEVKGPVTAICSF-NG---RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-- 138 (321)
T ss_dssp EEECSS-----EEEEEE-EEEESS-EEEEEEE-TT---EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--
T ss_pred EEEEcccccceEEEEEE-EEeecCcceEhhhh-CC---EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--
Confidence 999884 2233222 22457889999877 33 444443 58999999 4444 3322 22223356666553
Q ss_pred CCCcEEEEEECCCeEEEEEcCCCCe-ee--EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC-------C-
Q 001343 506 ENIQFIFSTAIDGKIKAWLYDTMGS-RV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-------G- 574 (1096)
Q Consensus 506 ~~~~~l~s~~~dg~i~iwd~~~~~~-~~--~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~-------~- 574 (1096)
+++++.|+....+.++.++.... .. ........++++.+-++++.++++.. ++.+.++.... +
T Consensus 139 --~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~----~gnl~~l~~~~~~~~~~~~~ 212 (321)
T PF03178_consen 139 --KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK----DGNLFVLRYNPEIPNSRDGD 212 (321)
T ss_dssp --TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET----TSEEEEEEE-SS-SSTTTTT
T ss_pred --ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC----CCeEEEEEECCCCccccccc
Confidence 35899999999998886665333 22 22334557899999877776666654 88888887652 1
Q ss_pred -eeeEEEcCcCccceEEE---EEeC--CC------CEEEEEEcCCeEEE
Q 001343 575 -TIKRTYAGFRKKSNGVV---QFDT--TQ------NHFLAVGEDSQIKF 611 (1096)
Q Consensus 575 -~~~~~~~~~~~~~i~~~---~~~~--~~------~~l~~~~~dg~i~i 611 (1096)
+......-|-+..+.++ ++.| .+ ..++.++.+|.|..
T Consensus 213 ~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 213 PKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp TBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 23333333434455555 3333 11 13666777777663
No 374
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.20 E-value=0.26 Score=52.58 Aligned_cols=228 Identities=15% Similarity=0.109 Sum_probs=126.0
Q ss_pred CCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 001343 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYS 434 (1096)
Q Consensus 355 ~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd 434 (1096)
.++ .|+.|+.+| +.++++....... ...+...|..+...|+-+.|++-+ |+.+.+++
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~--------------------~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~ 62 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPT--------------------RILKLSSITQLSVLPELNLLLVLS-DGQLYVYD 62 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCccce--------------------eEeecceEEEEEEecccCEEEEEc-CCccEEEE
Confidence 345 588888888 8999983222111 011333499999999887777664 49999999
Q ss_pred ccCCCccccce-----------eecccccCEEEEE--EecCCCcEEEEEEeCCCcEEEEE-cCC-----ceEEEeeCCCC
Q 001343 435 YAGSNDLRQHS-----------QIDAHVGAVNDLA--FAYPNKLLCVVTCGDDKLIKVWE-LSG-----RKLFNFEGHEA 495 (1096)
Q Consensus 435 ~~~~~~~~~~~-----------~l~~h~~~v~~l~--~s~d~~~~~l~s~s~d~~i~iwd-~~~-----~~~~~~~~~~~ 495 (1096)
+..-....... ........+...+ -...+.. .|+ ....+.|.+|. ... +..+.+. -..
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~ 139 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLC-VAVKKKILIYEWNDPRNSFSKLLKEIS-LPD 139 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeeccccccce-EEE-EEECCEEEEEEEECCcccccceeEEEE-cCC
Confidence 87643332110 0011223344444 1123331 344 44456888888 332 3445544 346
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC------------CcEEEEEEcCCCCEEEEEeeccCCC
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG------------HWCTTMLYSADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------~~i~~l~~s~~~~~l~~~~~~~~~~ 563 (1096)
.+.+++|.. +.++.|..++ ..+.|+.++.....+.... .++..+.. +++.+|++. +
T Consensus 140 ~~~~i~~~~----~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~------~ 207 (275)
T PF00780_consen 140 PPSSIAFLG----NKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY------D 207 (275)
T ss_pred CcEEEEEeC----CEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe------c
Confidence 788888862 4677776544 6678888655543332111 13333333 345555543 2
Q ss_pred CeEEEEeCCCCeeeE--EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC
Q 001343 564 SFLVEWNESEGTIKR--TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1096)
..-...|. .|+..+ .+.-.. ....+.+. ..++++.+. +.|.||++.++++++.+...
T Consensus 208 ~~g~fv~~-~G~~~r~~~i~W~~--~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 208 NIGVFVNK-NGEPSRKSTIQWSS--APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred ceEEEEcC-CCCcCcccEEEcCC--chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 22233333 343333 222211 23334442 356776665 56999999999999988755
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.15 E-value=0.029 Score=65.68 Aligned_cols=211 Identities=12% Similarity=0.118 Sum_probs=113.2
Q ss_pred CCeeeeeecCCCcEEEEec-------CC--eEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCC-CeEEEEe
Q 001343 832 EAVPCIALSKNDSYVMSAT-------GG--KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED-STIHIYN 901 (1096)
Q Consensus 832 ~~v~~l~~s~dg~~la~~~-------dg--~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~d-g~i~iw~ 901 (1096)
..+.+.++||||+.+|... ++ .|.+++. .+.......+. ..+.-.|+| ||+.|++.... ..+++.+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECC-CCCceEEEecCcceEEEec
Confidence 4678899999998887654 32 3666665 33332223232 478899999 88877776543 2233332
Q ss_pred eccceeeee--eccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEE---EEccccee-c---cccccCC
Q 001343 902 VRVDELCVW--SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAI---YDASKMER-I---RQWTPQD 972 (1096)
Q Consensus 902 ~~~~~~~~w--~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~i---wd~~~~~~-~---~~~~~~~ 972 (1096)
-.... .+| .++.-+ ..+.+. ..|..+.|||||..++...+++|.+ -....|+. + +.+...
T Consensus 426 ~~~~g-ql~~~~vd~ge-----~~~~~~----g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~- 494 (591)
T PRK13616 426 DPATG-QLARTPVDASA-----VASRVP----GPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPG- 494 (591)
T ss_pred cCCCc-eEEEEeccCch-----hhhccC----CCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecc-
Confidence 21111 122 111100 111122 2799999999999999955688887 44455541 1 112222
Q ss_pred CCCCCceEEEEeeCCcEEEEEecCCcEEEEecCC-CceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeC
Q 001343 973 ALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT-LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD 1051 (1096)
Q Consensus 973 ~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~d 1051 (1096)
....+.++.|..++.++ ++..++...+|.+.- |.....+... + ....+. .|+-++ ..++.+..+
T Consensus 495 -l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~-----n---~~~~v~--~vaa~~---~~iyv~~~~ 559 (591)
T PRK13616 495 -LGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSR-----N---LSAPVV--AVAASP---STVYVTDAR 559 (591)
T ss_pred -cCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCC-----C---ccCceE--EEecCC---ceEEEEcCC
Confidence 14446889999999965 555555555555432 2211111100 1 233444 355554 345555666
Q ss_pred CcEEEEccCCCCCccccCCCC
Q 001343 1052 GSVKVMEPSESEGKWGVSPPV 1072 (1096)
Q Consensus 1052 g~i~vW~v~~~~~~~~~~~~~ 1072 (1096)
|.+.+=.-.+++..|+.-...
T Consensus 560 g~~~l~~~~~~~~~W~ev~~l 580 (591)
T PRK13616 560 AVLQLPNSDSGDQYWREVPGL 580 (591)
T ss_pred ceEEecCCCCCCCCceECccc
Confidence 644433233344778765544
No 376
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.14 E-value=0.14 Score=54.54 Aligned_cols=221 Identities=15% Similarity=0.112 Sum_probs=130.8
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeE
Q 001343 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (1096)
Q Consensus 351 ~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i 430 (1096)
.|.|++..++.+--..+.|.-|+..+++... +. +.+.+.++..-.++..|+++.. -+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~~--g~ 87 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACEH--GV 87 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEcc--cc
Confidence 3556666567777778899999988775432 11 3334455555555556665533 45
Q ss_pred EEEEccCCCccccceee-ccc-ccCEEEEEEecCCCcEEEEEEeCC------------CcEEEEEcCCceEEEeeCCCCC
Q 001343 431 QLYSYAGSNDLRQHSQI-DAH-VGAVNDLAFAYPNKLLCVVTCGDD------------KLIKVWELSGRKLFNFEGHEAP 496 (1096)
Q Consensus 431 ~vwd~~~~~~~~~~~~l-~~h-~~~v~~l~~s~d~~~~~l~s~s~d------------~~i~iwd~~~~~~~~~~~~~~~ 496 (1096)
.+++.+++.....+... .+. ....+.+...|+|. +-+ +... |.++..|..+..++.+..+-..
T Consensus 88 ~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wf-gt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~ 164 (307)
T COG3386 88 RLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWF-GDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI 164 (307)
T ss_pred EEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEE-eCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence 66776655442211111 111 24567888889987 333 3322 3344444456666666666666
Q ss_pred eEEEEeeecCCCcEEEEE-ECCCeEEEEEcCC-----CCe--eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 497 VYSICPHHKENIQFIFST-AIDGKIKAWLYDT-----MGS--RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 497 v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~-----~~~--~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
-+.++|+| |++.++.+ +..+.|.-|++.. ... ........+..-.++...+|.+-+++.. +.+.|..
T Consensus 165 ~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~~ 239 (307)
T COG3386 165 PNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVVR 239 (307)
T ss_pred cCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEEE
Confidence 68899987 55555555 4458888887762 111 1122233445667788888887754432 1348999
Q ss_pred EeCCCCeeeEEEcCcCccceEEEEEe-CCCCEEEEEE
Q 001343 569 WNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVG 604 (1096)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~ 604 (1096)
|+.. |+.+..+..+.. .+.+++|. ++.+.|++.+
T Consensus 240 ~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 240 FNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 9988 999888887754 55666664 3445554444
No 377
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.12 E-value=0.38 Score=53.17 Aligned_cols=84 Identities=11% Similarity=0.191 Sum_probs=61.2
Q ss_pred CcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCC----------------C-E-E
Q 001343 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ----------------N-H-F 600 (1096)
Q Consensus 539 ~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~----------------~-~-l 600 (1096)
..+.+++.+|++++.++.. .-|.|.++|+.++..++.++|..+..+.-+.....+ . + +
T Consensus 308 R~~~~i~~sP~~~laA~tD----slGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTD----SLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred ceEEEEEECCCCCEEEEEc----CCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 3588999999988777753 389999999999999999999877443333222111 1 1 2
Q ss_pred EEEEcCCeEEEEeCCCCeEEEEeecC
Q 001343 601 LAVGEDSQIKFWDMDNVNILTSTDAE 626 (1096)
Q Consensus 601 ~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1096)
+-+-..|.|.||.++.|..+..+...
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEEEeC
Confidence 33567899999999999888777643
No 378
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.05 E-value=0.00024 Score=77.79 Aligned_cols=188 Identities=12% Similarity=0.106 Sum_probs=117.4
Q ss_pred eEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCee--eEEeCCCCcEEEEEEcC-CCCEEEEEeeccCCCCeEEEEeCCC
Q 001343 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR--VDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~-~~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
+.|+++....+..++++|..+|.|-+-.++..... .....+...+++++|++ |.+.|++|-...+.+..+.|||+.+
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s 138 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS 138 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence 45555544444467888889999998877654332 23345556899999988 4556666654445678899999987
Q ss_pred C--eee--EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC-eEEEEeecCCCCCCccEEEEeC-CCCEEEEE
Q 001343 574 G--TIK--RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSK-EGNLLAVT 647 (1096)
Q Consensus 574 ~--~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~ 647 (1096)
+ .+. ..|.+.......+++|-.+.+.+++|.....+.++|++.. .....+.. ..+..+...| .++++++-
T Consensus 139 ~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT----k~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 139 LLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT----KYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh----hhcccceecCCCCCceecc
Confidence 6 221 1222212224557888888889999999889999998732 22222211 1456778888 67777766
Q ss_pred ECCCcEEEEEc-CCCccccccccCCCcccccCcceeEEeecCCC
Q 001343 648 TADNGFKILAN-AIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (1096)
Q Consensus 648 ~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 690 (1096)
. ||.|.+||. .+-...+..+........ ..+..+++.|...
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~-~~l~~~aycPtrt 256 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKP-KQLFALAYCPTRT 256 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcc-cceeeEEeccCCc
Confidence 5 899999993 333333333333222211 2456677776543
No 379
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.024 Score=61.49 Aligned_cols=144 Identities=12% Similarity=0.135 Sum_probs=98.9
Q ss_pred CCCCEEE-EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEE-----EEEeCCCcEEEEE--cCCc-e
Q 001343 416 PDGNYVG-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCV-----VTCGDDKLIKVWE--LSGR-K 486 (1096)
Q Consensus 416 pd~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l-----~s~s~d~~i~iwd--~~~~-~ 486 (1096)
.+.++|+ ++.....++=.|++.|+.+. ++.-|.. |+-+.+.|+.+...+ +.|-.|..|.-|| ..++ .
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k 418 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK 418 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcce
Confidence 3444444 45555678888999998876 4555555 778888887543112 3456788999999 5555 3
Q ss_pred EEEeeCCC----CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCC
Q 001343 487 LFNFEGHE----APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 487 ~~~~~~~~----~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
+..-++|. ....|.+- .++ .+|++|+.+|.||+||--.......+++-+.+|..+..+.+|+++++.+
T Consensus 419 l~~~q~kqy~~k~nFsc~aT--T~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc----- 490 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFAT--TES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC----- 490 (644)
T ss_pred eeeeeccccccccccceeee--cCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----
Confidence 33333332 23444443 444 4899999999999998644444556777788999999999999998876
Q ss_pred CCeEEEEeC
Q 001343 563 DSFLVEWNE 571 (1096)
Q Consensus 563 ~~~i~iwd~ 571 (1096)
+..+.+.++
T Consensus 491 ~tyLlLi~t 499 (644)
T KOG2395|consen 491 KTYLLLIDT 499 (644)
T ss_pred ccEEEEEEE
Confidence 667777664
No 380
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0038 Score=68.88 Aligned_cols=94 Identities=19% Similarity=0.392 Sum_probs=71.4
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEE-EEEEcCCCCEEEE
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS-RVAWSPDGNYVGV 423 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~spd~~~l~s 423 (1096)
..|.-+.|+|.-. ++|++..+|.|.+..+. -+.+ |. +.-|+..++ +++|.|||+.||+
T Consensus 21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRl-------wt------------ip~p~~~v~~sL~W~~DGkllaV 79 (665)
T KOG4640|consen 21 INIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRL-------WT------------IPIPGENVTASLCWRPDGKLLAV 79 (665)
T ss_pred cceEEEEEcCccc-hhheeccCCcEEEEEec-ccee-------Ee------------ccCCCCccceeeeecCCCCEEEE
Confidence 3678899999988 89999999999998887 3332 32 222445555 9999999999999
Q ss_pred EECCCeEEEEEccCCCccccceeecccccCEEEEEEec
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~ 461 (1096)
|-.||+|++-|++++..+... ...-...|.++-|.+
T Consensus 80 g~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred EecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 999999999999998766531 223445677777763
No 381
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=96.80 E-value=1.9 Score=51.59 Aligned_cols=111 Identities=14% Similarity=0.081 Sum_probs=73.7
Q ss_pred EEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEE--EecCCCceeEEEc
Q 001343 937 VQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGV--FDADTLRLRCYIA 1014 (1096)
Q Consensus 937 v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~v--wd~~~~~~~~~~~ 1014 (1096)
.+..|.+.+++++....+++||+-..++++...... ....|..+.+ .+..+++|...-.|.+ |+-+..+++....
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~-~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKF-IPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhcc-CceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 466777778888888999999998888777665432 2455666664 5667888886666665 4444445554433
Q ss_pred cccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCCC
Q 001343 1015 PSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1063 (1096)
Q Consensus 1015 ~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~ 1063 (1096)
.+ -..+|+ ++.+- |.+.+|.+..=|.+.+-.+...-
T Consensus 1016 D~---------~pR~Vt--~~~~l--D~~tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 1016 DP---------VPRHVT--ALELL--DYDTVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred CC---------ccceee--EEEEe--cCCceeeccccCcEEEEECCCcc
Confidence 22 233566 34443 67788888888888887765543
No 382
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.78 E-value=0.17 Score=49.08 Aligned_cols=101 Identities=13% Similarity=0.129 Sum_probs=66.0
Q ss_pred EEEEEecCCceEEEeec-CCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEE
Q 001343 768 VRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1096)
Q Consensus 768 ~~l~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~l 846 (1096)
..++|+.+.+.+....+ +-+|.-|+.+... |... ..-.++|++..+.....+ --.+++..+|.+.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~t----G~~s--nr~~i~dlrk~~~~e~~~--------PDGm~ID~eG~L~ 226 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPT----GDLS--NRKVIFDLRKSQPFESLE--------PDGMTIDTEGNLY 226 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCc----cccc--CcceeEEeccCCCcCCCC--------CCcceEccCCcEE
Confidence 46788888777765554 6788778854321 1111 122344444433222111 1235666678766
Q ss_pred EEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEec
Q 001343 847 MSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882 (1096)
Q Consensus 847 a~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~ 882 (1096)
++.- .++|...|..+|+.+.+++-+...|++++|--
T Consensus 227 Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 227 VATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 6665 68899999999999999999999999999954
No 383
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=96.71 E-value=0.0014 Score=60.90 Aligned_cols=64 Identities=14% Similarity=0.272 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccCccchhhhcccCC
Q 001343 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD 135 (1096)
Q Consensus 72 ~~~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 135 (1096)
++|+|+.|.||+|+..|+.++|..|+.+.-.-+...+.+++++|..+....+..+++....++.
T Consensus 40 lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~ 103 (142)
T PF04494_consen 40 LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRS 103 (142)
T ss_dssp GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHh
Confidence 8999999999999999999999999999877777777888999988777776665555544433
No 384
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=96.71 E-value=0.0017 Score=59.56 Aligned_cols=78 Identities=18% Similarity=0.269 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccCccchhhhcccCC-------chHHHHHHH
Q 001343 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIML 144 (1096)
Q Consensus 72 ~~~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~r~~l~ 144 (1096)
++|+|+.+.||||+..|+.++|..|+.+.-.-+...+.+++++|+.+....+..+++....+++ ++.+-..|+
T Consensus 29 lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s~~lL~ 108 (133)
T cd08044 29 LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDAYSLLL 108 (133)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHHHHHHH
Confidence 9999999999999999999999999998777666667899999999998888887776665544 233334555
Q ss_pred HHHHh
Q 001343 145 IELKK 149 (1096)
Q Consensus 145 ~~l~~ 149 (1096)
..|++
T Consensus 109 ~~L~~ 113 (133)
T cd08044 109 RFLES 113 (133)
T ss_pred HHHHH
Confidence 55554
No 385
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.64 E-value=0.0048 Score=41.98 Aligned_cols=35 Identities=31% Similarity=0.608 Sum_probs=30.1
Q ss_pred EEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 001343 338 AVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWE 373 (1096)
Q Consensus 338 ~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd 373 (1096)
...+. |...|.+++|+|++. ++++|+.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 44444 888999999999997 799999999999996
No 386
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.62 E-value=0.24 Score=54.21 Aligned_cols=175 Identities=14% Similarity=0.076 Sum_probs=105.6
Q ss_pred cEEEEE-cCCceEEEeeCC-CCCeEEEEeee-cC----CCcEEEEEEC----------CCeEEEEEcCCC----Ceee--
Q 001343 476 LIKVWE-LSGRKLFNFEGH-EAPVYSICPHH-KE----NIQFIFSTAI----------DGKIKAWLYDTM----GSRV-- 532 (1096)
Q Consensus 476 ~i~iwd-~~~~~~~~~~~~-~~~v~~~~~~~-~~----~~~~l~s~~~----------dg~i~iwd~~~~----~~~~-- 532 (1096)
.|++.| .+.+.+.++.-. ...+.+++... .. ...+|++|+. .|.|.++++... ....
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 577888 667666554322 22355554322 21 2467777753 299999999874 1211
Q ss_pred EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe-eeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEE
Q 001343 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1096)
Q Consensus 533 ~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 611 (1096)
......++|++++-- ++. ++++. ...|++|++...+ ....-..+....+.++.. .++++++|.....+.+
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~-----g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAV-----GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEE-----TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEE
T ss_pred EEEeecCcceEhhhh-CCE-EEEee-----cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEE
Confidence 112335678888766 344 55544 6789999998777 544433333324444443 4679999998888888
Q ss_pred EeCCC-CeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 612 WDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 612 wd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
+..+. ...+..+........+.++.|-+++..++++..+|.+.++...
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 75543 3333333332223368888888666799999999999999875
No 387
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.57 E-value=0.0055 Score=41.69 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=34.2
Q ss_pred ceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEe
Q 001343 862 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1096)
Q Consensus 862 ~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~ 901 (1096)
++.+..+..|...|.++.|.+ ++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 355667778899999999999 789999999999999996
No 388
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.50 E-value=0.1 Score=61.21 Aligned_cols=155 Identities=15% Similarity=0.118 Sum_probs=89.3
Q ss_pred CCeeEEEEecCCCcEEEEee------CCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEE
Q 001343 873 PASTFLAFHPQDNNIIAIGT------EDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM 946 (1096)
Q Consensus 873 ~~i~~l~~s~~d~~~l~s~~------~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l 946 (1096)
..+.+.+++| |++.++... .|+.-.||-...+. . ......+. ..+...|+|||..|
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg------------~--~~~lt~g~---~~t~PsWspDG~~l 411 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGG------------V--AVQVLEGH---SLTRPSWSLDADAV 411 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCC------------c--ceeeecCC---CCCCceECCCCCce
Confidence 4678899999 788777665 24444555433222 0 11122232 46889999998877
Q ss_pred EEEec-------------ceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEE---EecCCCcee
Q 001343 947 LVVHE-------------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGV---FDADTLRLR 1010 (1096)
Q Consensus 947 ~~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~v---wd~~~~~~~ 1010 (1096)
++..| +.+.+.+++.++... . +...|..+.|||||+.||... +|.|.| -....|..
T Consensus 412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~--~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~- 483 (591)
T PRK13616 412 WVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----R--VPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQY- 483 (591)
T ss_pred EEEecCcceEEEeccCCCceEEEEeccCchhhh----c--cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCce-
Confidence 77322 234444554444322 1 156799999999999988766 577777 55455651
Q ss_pred EEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCC
Q 001343 1011 CYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1061 (1096)
Q Consensus 1011 ~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~ 1061 (1096)
.+.....+..+ -...+. .+.|.+ ++. |+++..++.-.+|.+.-
T Consensus 484 -~l~~~~~l~~~---l~~~~~--~l~W~~-~~~-L~V~~~~~~~~v~~v~v 526 (591)
T PRK13616 484 -ALTNPREVGPG---LGDTAV--SLDWRT-GDS-LVVGRSDPEHPVWYVNL 526 (591)
T ss_pred -eecccEEeecc---cCCccc--cceEec-CCE-EEEEecCCCCceEEEec
Confidence 11111111112 122234 488987 666 55666666666776544
No 389
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.45 E-value=0.45 Score=51.65 Aligned_cols=150 Identities=13% Similarity=0.077 Sum_probs=74.2
Q ss_pred CcEEEEEE-CCCeEEEEEcCCCC--e--eeEEeC---CC----CcEEEEEEcCCCCEEEEEeecc--CCCCeEEEEeCCC
Q 001343 508 IQFIFSTA-IDGKIKAWLYDTMG--S--RVDYDA---PG----HWCTTMLYSADGSRLFSCGTSK--DGDSFLVEWNESE 573 (1096)
Q Consensus 508 ~~~l~s~~-~dg~i~iwd~~~~~--~--~~~~~~---~~----~~i~~l~~s~~~~~l~~~~~~~--~~~~~i~iwd~~~ 573 (1096)
.++|+..+ ..+.|.|.|+.+.- . ...+.. .. .....+..-|+|+.++++-.+. ++.+.+.++|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 45666665 67889999987322 1 112211 00 1233445558998888765543 4456888999988
Q ss_pred CeeeEEEcCcCc--cceEEEEEeCCCCEEEEEE--------------------cCCeEEEEeCCCCeEEEEeecCCCCCC
Q 001343 574 GTIKRTYAGFRK--KSNGVVQFDTTQNHFLAVG--------------------EDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1096)
Q Consensus 574 ~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1096)
.+.......... ..-..+.+.|..+.+++.. ...++.+||+.+.+.++++........
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 888877765433 2344577888888888853 246899999999999999987654224
Q ss_pred ccEEEEeC--CCCEEEEEE-CCCcEEEEE
Q 001343 632 LPRLRFSK--EGNLLAVTT-ADNGFKILA 657 (1096)
Q Consensus 632 v~~~~~s~--~~~~l~~~~-~dg~i~iwd 657 (1096)
+..+.|.. +..+=++++ -.++|..|-
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~ 275 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFY 275 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEE
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEE
Confidence 55666654 333333332 334444443
No 390
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.40 E-value=0.086 Score=62.61 Aligned_cols=141 Identities=11% Similarity=0.102 Sum_probs=95.8
Q ss_pred EEEEEeCCCcEEEEE-cCCceEEEeeCCCCC-eEEEEeeec---CCCcEEEEEECCCeEEEEEcCCCCeeeEE-e----C
Q 001343 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP-VYSICPHHK---ENIQFIFSTAIDGKIKAWLYDTMGSRVDY-D----A 536 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~----~ 536 (1096)
+|........|+-.| ..|+.+..+..|... |..++.... -+..-.+.|-.+..+..||.+........ . .
T Consensus 496 il~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~ 575 (794)
T PF08553_consen 496 ILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS 575 (794)
T ss_pred EeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccc
Confidence 344445568899999 899999999987754 666653211 01234667888889999999865422211 1 1
Q ss_pred CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 001343 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 537 ~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1096)
......|++-+.+| +||+|+. +|.|++||--..+....+.+... +|..+..+.||+++++.+. ..+.+++.
T Consensus 576 ~~~~Fs~~aTt~~G-~iavgs~----~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 576 SKNNFSCFATTEDG-YIAVGSN----KGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred cCCCceEEEecCCc-eEEEEeC----CCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 23367888888777 5666665 99999999543333344555554 8999999999999888775 46666664
No 391
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.26 E-value=0.32 Score=57.22 Aligned_cols=233 Identities=11% Similarity=0.021 Sum_probs=120.4
Q ss_pred CCCEEEEEECC------CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC------CcEEEEE-cC
Q 001343 417 DGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD------KLIKVWE-LS 483 (1096)
Q Consensus 417 d~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d------~~i~iwd-~~ 483 (1096)
.+..+++||.+ ..+..||..++.-.. ...+. +...-.+++... +. +.++||.| .++..|| ..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 35556666665 367888888763222 11222 222344455543 44 78888888 3677788 55
Q ss_pred CceEE--EeeCCCCCeEEEEeeecCCCcEEEEEECCCe-----EEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEE
Q 001343 484 GRKLF--NFEGHEAPVYSICPHHKENIQFIFSTAIDGK-----IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1096)
Q Consensus 484 ~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 556 (1096)
++-.. .+...........+ +|.+.++||.||. +-.||..+.+-...-......-..-...-+|...++|
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred CceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence 44222 11111111212221 5678889998875 5667666544333222222111122222456666666
Q ss_pred eeccCC--CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCC-----eEEEEeCCCCeEEEEeecCCCC
Q 001343 557 GTSKDG--DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNILTSTDAEGGL 629 (1096)
Q Consensus 557 ~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~ 629 (1096)
|.+... -..+..||..+......-.-.....-..++ .-++...+.||.|+ +|..||..+.+....-......
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r 513 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR 513 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc
Confidence 643322 257888888876654332222221111122 23566777777665 3788888887766553222221
Q ss_pred CCccEEEEeCCCCEEEEEECCCc-----EEEEEcCCC
Q 001343 630 PNLPRLRFSKEGNLLAVTTADNG-----FKILANAIG 661 (1096)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~~dg~-----i~iwd~~~~ 661 (1096)
..+....+ ++...++|+.||. |..||..++
T Consensus 514 s~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 514 SAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 12222222 6678888887754 555655544
No 392
>PRK10115 protease 2; Provisional
Probab=96.24 E-value=4.4 Score=49.23 Aligned_cols=244 Identities=8% Similarity=0.015 Sum_probs=119.3
Q ss_pred CCEEEEEEcCCCCEEEEEECC-----CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC-----Cc
Q 001343 407 ISVSRVAWSPDGNYVGVAFTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KL 476 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d-----~~ 476 (1096)
-.+..+.|||||++|+.+... ..|++.|+.+|..+.. .+.+ . -..++|.+|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 357778999999999876432 3688999988864332 1222 1 156999999985 33433322 35
Q ss_pred EEEEE-cCC--ceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC---CCeEEEEEcCC--CCeeeEEeCCCCcEEEEEEcC
Q 001343 477 IKVWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDT--MGSRVDYDAPGHWCTTMLYSA 548 (1096)
Q Consensus 477 i~iwd-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~--~~~~~~~~~~~~~i~~l~~s~ 548 (1096)
|+.++ -++ +....+........ +......++.+++..+. ++.+.+++... ................+. +.
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 278 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY 278 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC
Confidence 66677 444 22333443333333 22222335566554433 35688888532 222222322223233332 22
Q ss_pred CCCEEEEEeeccCCCCeEEEEeCCC-CeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC-CeEEEEeecC
Q 001343 549 DGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAE 626 (1096)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~ 626 (1096)
+..+...+........|...++.+ ++....+.......+..+.+. .+..+++...+|.-+++-+.. +..+..+...
T Consensus 279 -~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~ 356 (686)
T PRK10115 279 -QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAFD 356 (686)
T ss_pred -CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecCC
Confidence 344444332222244555556552 332223333233366667776 334555555666655544432 2233333311
Q ss_pred CCCCCccEEEEe--CCCC-EEEEEEC---CCcEEEEEcCCC
Q 001343 627 GGLPNLPRLRFS--KEGN-LLAVTTA---DNGFKILANAIG 661 (1096)
Q Consensus 627 ~~~~~v~~~~~s--~~~~-~l~~~~~---dg~i~iwd~~~~ 661 (1096)
.. ..+..+.++ +++. ++++.++ -+.+..+|..++
T Consensus 357 ~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 357 DP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 11 122223344 3333 4444333 356888887765
No 393
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.19 Score=54.78 Aligned_cols=145 Identities=12% Similarity=0.192 Sum_probs=99.0
Q ss_pred CCCcEEEEec--CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCc-------EEEEeeCCCeEEEEeeccceeeeee
Q 001343 841 KNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN-------IIAIGTEDSTIHIYNVRVDELCVWS 911 (1096)
Q Consensus 841 ~dg~~la~~~--dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~-------~l~s~~~dg~i~iw~~~~~~~~~w~ 911 (1096)
.+..+|.... ...++=.|+..|+.+..++-|.. |+-+.+.| +.+ .-+.|-.|+.|+-||.+-..
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~----- 415 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQG----- 415 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccC-CcchhcccccccEEeecCCceEEecccccC-----
Confidence 3444544433 36799999999999999987776 77778877 443 23456678888888876432
Q ss_pred ccccccccceeeecCCCCCC---CCCceEEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCc
Q 001343 912 IDTWEKRKSVTIHIPAGKTP---TGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ 988 (1096)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~---~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 988 (1096)
...+....+|.. ....|.+-..+|..++.+.+|.|++||- .+..-++..++ +..+|..+..+.||+
T Consensus 416 --------~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPg--LG~~I~hVdvtadGK 484 (644)
T KOG2395|consen 416 --------KNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPG--LGDAIKHVDVTADGK 484 (644)
T ss_pred --------cceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccc--cCCceeeEEeeccCc
Confidence 001222222222 2456666677775555589999999998 66666666666 389999999999999
Q ss_pred EEEEEecCCcEEEEec
Q 001343 989 LVFATFCDGNIGVFDA 1004 (1096)
Q Consensus 989 ~la~~~~dg~i~vwd~ 1004 (1096)
+|+ |..+..+.+-++
T Consensus 485 wil-~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 485 WIL-ATCKTYLLLIDT 499 (644)
T ss_pred EEE-EecccEEEEEEE
Confidence 988 444556666664
No 394
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.022 Score=63.16 Aligned_cols=93 Identities=14% Similarity=0.069 Sum_probs=75.8
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEE-EEEEcCCCCEEEEEeeccCCCCeEEEEeCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCT-TMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~-~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
..+.-+.|+|.. .++|.+..+|.+.+..++ .+.+..+..++..++ +++|.|||+.+++|-. +|+|++.|..+
T Consensus 21 ~~i~~~ewnP~~--dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~k----dG~I~L~Dve~ 93 (665)
T KOG4640|consen 21 INIKRIEWNPKM--DLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFK----DGTIRLHDVEK 93 (665)
T ss_pred cceEEEEEcCcc--chhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEec----CCeEEEEEccC
Confidence 346778888865 589999999999998887 777778887777777 9999999999999998 99999999999
Q ss_pred CeeeEEEcCcCccceEEEEEe
Q 001343 574 GTIKRTYAGFRKKSNGVVQFD 594 (1096)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~~~~ 594 (1096)
+..+..+.......+.++.|+
T Consensus 94 ~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 94 GGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred CCceeccccccccchheeecc
Confidence 988877543333466667775
No 395
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.16 E-value=0.17 Score=43.57 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=63.5
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCe
Q 001343 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (1096)
Q Consensus 350 v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~ 429 (1096)
+.|..||..-|++|+.|..|+||+-. +.+.+ + .-.+.|+++.-... ..++.+..+|+
T Consensus 8 ~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E-------------------i-~e~~~v~~L~~~~~-~~F~Y~l~NGT 64 (111)
T PF14783_consen 8 FDFDGDGENELLVGSDDFEIRVFKGD--EIVAE-------------------I-TETDKVTSLCSLGG-GRFAYALANGT 64 (111)
T ss_pred EecCCCCcceEEEecCCcEEEEEeCC--cEEEE-------------------E-ecccceEEEEEcCC-CEEEEEecCCE
Confidence 34455666679999999999999954 33321 1 13457888877766 66888999999
Q ss_pred EEEEEccCCCccccceeecccccCEEEEEEec---CCCcEEEEEEeCCCcEE
Q 001343 430 IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 430 i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~---d~~~~~l~s~s~d~~i~ 478 (1096)
|-+|+-.. +..+ .+ .+..++++.+.. ||.. -|++|=.+|.|-
T Consensus 65 VGvY~~~~-RlWR----iK-SK~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 65 VGVYDRSQ-RLWR----IK-SKNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EEEEeCcc-eeee----ec-cCCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 99997533 1121 22 223366665543 3433 588888788764
No 396
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.13 E-value=3.2 Score=46.68 Aligned_cols=149 Identities=11% Similarity=0.060 Sum_probs=81.5
Q ss_pred CcEEEEEEcCCC-----CEEEEEeeccCCCCeEEEEeCC-----CCeeeEEEcCcCccc----eEEEEEeCCCCEEEEEE
Q 001343 539 HWCTTMLYSADG-----SRLFSCGTSKDGDSFLVEWNES-----EGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVG 604 (1096)
Q Consensus 539 ~~i~~l~~s~~~-----~~l~~~~~~~~~~~~i~iwd~~-----~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~ 604 (1096)
..|..+.|.|-+ .+|++-. ...|.+|.+. +.+.+..-..+-... ...+.|+|....+++-.
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQH-----kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT 131 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQH-----KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLT 131 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEec-----cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEe
Confidence 358889998853 2444443 7899999875 233333222221111 12377999988887766
Q ss_pred cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC-CcEEEEEcCCCccccccccCCCcccccCcceeE
Q 001343 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-NGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (1096)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 683 (1096)
....-.++++......-..... ..+.|.|.+|.+||+.|+++-.. =.-++||-.. +.+.......-....+.|.++
T Consensus 132 ~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q--KtL~~CsfcPVFdv~~~Icsi 208 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ--KTLHRCSFCPVFDVGGYICSI 208 (671)
T ss_pred cCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch--hhhhhCCcceeecCCCceEEE
Confidence 5544456666543333333322 23479999999999887766543 2356776432 233333322222223345555
Q ss_pred EeecCCCeEEec
Q 001343 684 ALKVSASSAVSS 695 (1096)
Q Consensus 684 ~~s~~g~~lv~~ 695 (1096)
.-.-|....+++
T Consensus 209 ~AT~dsqVAvaT 220 (671)
T PF15390_consen 209 EATVDSQVAVAT 220 (671)
T ss_pred EEeccceEEEEe
Confidence 444444444443
No 397
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=0.088 Score=62.34 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=76.9
Q ss_pred CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC
Q 001343 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1096)
Q Consensus 417 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~ 495 (1096)
.+..++.|+..|.|-..|+.+. ++....-..-.++|++++|+.+|. .++.|-.+|.|.+|| ..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4567888999999988888764 221111223467999999999999 899999999999999 88899999988888
Q ss_pred CeEEEEeee-cCCCcEEEEEECCCeEEEEEc
Q 001343 496 PVYSICPHH-KENIQFIFSTAIDGKIKAWLY 525 (1096)
Q Consensus 496 ~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~ 525 (1096)
+.+++-++. .+++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 877765543 233446788877776 5654
No 398
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.05 E-value=0.6 Score=40.32 Aligned_cols=103 Identities=8% Similarity=0.053 Sum_probs=61.8
Q ss_pred eEEEEeeec-CC-CcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 497 VYSICPHHK-EN-IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 497 v~~~~~~~~-~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
|+++++..- ++ .+.|++|+.|..||+|+- .+.+..+. ....|.+++-...++ ++.+.. +|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~~~-F~Y~l~----NGTVGvY~~~-- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGGGR-FAYALA----NGTVGVYDRS-- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCCCE-EEEEec----CCEEEEEeCc--
Confidence 566665442 22 258999999999999953 34444443 345688888777755 555544 8899988753
Q ss_pred eeeEEEcCcCccceEEEEEeCCC---CEEEEEEcCCeEE
Q 001343 575 TIKRTYAGFRKKSNGVVQFDTTQ---NHFLAVGEDSQIK 610 (1096)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~ 610 (1096)
..+-..+..+. ++....+..++ ..|++|-.+|.|-
T Consensus 72 ~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 QRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22223333222 33333444333 3688888888764
No 399
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.93 E-value=0.029 Score=40.08 Aligned_cols=34 Identities=29% Similarity=0.588 Sum_probs=30.0
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCe
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDR 379 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~ 379 (1096)
...|.+++|+|... ++|.|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 45799999999999 8999999999999998 5553
No 400
>PHA02713 hypothetical protein; Provisional
Probab=95.89 E-value=0.63 Score=54.93 Aligned_cols=196 Identities=12% Similarity=0.101 Sum_probs=103.0
Q ss_pred CCCcEEEEec-C------CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCC-----eEEEEeeccceee
Q 001343 841 KNDSYVMSAT-G------GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS-----TIHIYNVRVDELC 908 (1096)
Q Consensus 841 ~dg~~la~~~-d------g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg-----~i~iw~~~~~~~~ 908 (1096)
-++.+.+.|+ + ..+..||..+......-.-....-...+..- ++++.+.||.++ ++..||..+++
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~-~g~IYviGG~~~~~~~~sve~Ydp~~~~-- 378 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI-DDTIYAIGGQNGTNVERTIECYTMGDDK-- 378 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-CCEEEEECCcCCCCCCceEEEEECCCCe--
Confidence 3677777776 3 2378889877654222111111111122233 688889998764 47788887765
Q ss_pred eeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Eec-----------------------ceEEEEEccccee
Q 001343 909 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHE-----------------------TQLAIYDASKMER 964 (1096)
Q Consensus 909 ~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d-----------------------~~i~iwd~~~~~~ 964 (1096)
|.. +..+..... ....+ .-+|+..+. |.+ ..+..||..+.+-
T Consensus 379 -W~~----------~~~mp~~r~-~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W 444 (557)
T PHA02713 379 -WKM----------LPDMPIALS-SYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW 444 (557)
T ss_pred -EEE----------CCCCCcccc-cccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE
Confidence 432 111111111 11122 235666666 332 2477888876542
Q ss_pred --ccccccCCCCCCCceEEEEeeCCcEEEEEecCC------cEEEEecCC-CceeEEEccccccCCCccCCCccccceEE
Q 001343 965 --IRQWTPQDALSAPISCAVYSCNSQLVFATFCDG------NIGVFDADT-LRLRCYIAPSTYLSPSVLNGSQTVYPLVV 1035 (1096)
Q Consensus 965 --~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~h~~~v~s~~l 1035 (1096)
+..+... ....-+..-+|++.++|+.++ .|..||.++ .+-...-. .|.. . ... .+
T Consensus 445 ~~v~~m~~~-----r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~----m~~~----r-~~~--~~ 508 (557)
T PHA02713 445 ETLPNFWTG-----TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT----TESR----L-SAL--HT 508 (557)
T ss_pred eecCCCCcc-----cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc----cCcc----c-ccc--ee
Confidence 2333221 112222345778777787542 467899887 55322111 1111 0 111 22
Q ss_pred EecCCCCceEEEEeeCC--cEEEEccCCCCCccccCCCCC
Q 001343 1036 AAHPLEPNQFAIGLTDG--SVKVMEPSESEGKWGVSPPVD 1073 (1096)
Q Consensus 1036 ~~s~~d~~~l~s~~~dg--~i~vW~v~~~~~~~~~~~~~~ 1073 (1096)
+.. ++...++|+.|| ++..||+.+ .+|..-.|-.
T Consensus 509 ~~~--~~~iyv~Gg~~~~~~~e~yd~~~--~~W~~~~~~~ 544 (557)
T PHA02713 509 ILH--DNTIMMLHCYESYMLQDTFNVYT--YEWNHICHQH 544 (557)
T ss_pred EEE--CCEEEEEeeecceeehhhcCccc--ccccchhhhc
Confidence 332 689999999998 788888776 5566554443
No 401
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.86 E-value=4 Score=45.48 Aligned_cols=278 Identities=10% Similarity=0.138 Sum_probs=145.7
Q ss_pred cCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-----CCCEEEEEECC
Q 001343 353 HPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-----DGNYVGVAFTK 427 (1096)
Q Consensus 353 sp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----d~~~l~s~~~d 427 (1096)
+++++..+++||..|.++||+...+..... .+ . +-..-+.+|..+..-+ +...||+ -.-
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~l----------l----lE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP 96 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPE-DL----------L----LETQLKDPILQVECGKFVSGSEDLQLAV-LHP 96 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCc-cE----------E----EEEecCCcEEEEEeccccCCCCcceEEE-ecC
Confidence 344445799999999999999855442111 00 0 0111245677776542 3345555 456
Q ss_pred CeEEEEEccCCCcc------ccceeeccccc--CEEEEEEecC----CCcEEEEEEeCCCcEEEEEcCCceEEE-eeC--
Q 001343 428 HLIQLYSYAGSNDL------RQHSQIDAHVG--AVNDLAFAYP----NKLLCVVTCGDDKLIKVWELSGRKLFN-FEG-- 492 (1096)
Q Consensus 428 g~i~vwd~~~~~~~------~~~~~l~~h~~--~v~~l~~s~d----~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~-- 492 (1096)
..+.||.+...... ..+..+..|.- ....++.-|- ++. +|+.=+-||.+.+++.+.-.... +.+
T Consensus 97 ~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~l 175 (418)
T PF14727_consen 97 RKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFL 175 (418)
T ss_pred CEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCC
Confidence 78888887422111 11112223332 2333333332 223 78888999999999955444333 322
Q ss_pred CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCC--------------------e---eeEEeCCCC--cEEEEEEc
Q 001343 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--------------------S---RVDYDAPGH--WCTTMLYS 547 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------------~---~~~~~~~~~--~i~~l~~s 547 (1096)
..+| +++.+.. +.+++++.+..+..|....-. . .+.+..... .|..+.++
T Consensus 176 lPgP---l~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~ 250 (418)
T PF14727_consen 176 LPGP---LCYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFS 250 (418)
T ss_pred CCcC---eEEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcC
Confidence 2333 4454443 478888888888888653100 0 011211111 23334444
Q ss_pred CCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC----CC---CEEEEEEcCCeEEEEeCCCCeEE
Q 001343 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT----TQ---NHFLAVGEDSQIKFWDMDNVNIL 620 (1096)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~----~~---~~l~~~~~dg~i~iwd~~~~~~~ 620 (1096)
.....+++-+ +..+.+.+. +|......+- ...+...+.|.. .+ ..+++++.++.+.||.=. +++
T Consensus 251 ~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~ 321 (418)
T PF14727_consen 251 SSESDIVVLG-----ERSLFCLKD-NGSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLV 321 (418)
T ss_pred CCCceEEEEe-----cceEEEEcC-CCeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEE
Confidence 3444455444 677877775 4544433332 121222222222 22 248889999999999743 344
Q ss_pred EEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.........-.+.-..|..-...|++-+.+|.+.+-=+-+.
T Consensus 322 WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 322 WSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 43333221111222223334568888889999988766655
No 402
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.86 E-value=3.6 Score=44.98 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=36.0
Q ss_pred CCEEEEEEcCCeEEEEeCCCCeEEE-EeecCCCC-CCccEEEEeCCCCEEEEEECCCcEE
Q 001343 597 QNHFLAVGEDSQIKFWDMDNVNILT-STDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFK 654 (1096)
Q Consensus 597 ~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1096)
+.++++.-..+.|....++.+..+. ........ ..+..+++.|||.++++...+|.|.
T Consensus 271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 3455555556788888887553332 22212222 2688999999999998888888764
No 403
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.85 E-value=1 Score=45.90 Aligned_cols=200 Identities=14% Similarity=0.122 Sum_probs=106.5
Q ss_pred CcccEEEEEEecCCceEEEeecCC--eEEEeeccCCccCCCCceeeecCccccccCcccccc-ccccCCCcCCCeeeeee
Q 001343 763 TSSKVVRLLYTNSAVGLLALGSNG--VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA-NDVAGVNLEEAVPCIAL 839 (1096)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~~dg--~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~-~~~~g~~~~~~v~~l~~ 839 (1096)
...-...+.|..+|..+-+++.-| .++.++ +.+|+... ..++ ...--..+++
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d----------------------~~tg~~~~~~~l~---~~~FgEGit~ 97 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKVD----------------------LETGKVLQSVPLP---PRYFGEGITI 97 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEEEEE----------------------TTTSSEEEEEE-T---TT--EEEEEE
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEEEEE----------------------CCCCcEEEEEECC---ccccceeEEE
Confidence 334566788888887666666655 444444 44444322 1222 2222334555
Q ss_pred cCCCcEEEEecCCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeecccccccc
Q 001343 840 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRK 919 (1096)
Q Consensus 840 s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~ 919 (1096)
-.|.=+..|=-++...+||..+.+.+.++.-. +.-+.++ . |++.|+.......+.++|..+-+
T Consensus 98 ~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt--~-dg~~Li~SDGS~~L~~~dP~~f~------------- 160 (264)
T PF05096_consen 98 LGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLT--S-DGKRLIMSDGSSRLYFLDPETFK------------- 160 (264)
T ss_dssp ETTEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEE--E-CSSCEEEE-SSSEEEEE-TTT-S-------------
T ss_pred ECCEEEEEEecCCeEEEEccccceEEEEEecC-CcceEEE--c-CCCEEEEECCccceEEECCcccc-------------
Confidence 44433333444799999999999999988543 4667777 3 56667766666677777765543
Q ss_pred ceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcE
Q 001343 920 SVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 999 (1096)
Q Consensus 920 ~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i 999 (1096)
.+. .|.|.+ .+.. -..+.-+.+- +|...|-.-....|
T Consensus 161 -------------~~~-----------------~i~V~~--~g~p----------v~~LNELE~i-~G~IyANVW~td~I 197 (264)
T PF05096_consen 161 -------------EVR-----------------TIQVTD--NGRP----------VSNLNELEYI-NGKIYANVWQTDRI 197 (264)
T ss_dssp -------------EEE-----------------EEE-EE--TTEE-------------EEEEEEE-TTEEEEEETTSSEE
T ss_pred -------------eEE-----------------EEEEEE--CCEE----------CCCcEeEEEE-cCEEEEEeCCCCeE
Confidence 111 122211 1121 1223344442 77777777777788
Q ss_pred EEEecCCCceeEEEccccccCCCcc--CC--CccccceEEEecCCCCceEEEE
Q 001343 1000 GVFDADTLRLRCYIAPSTYLSPSVL--NG--SQTVYPLVVAAHPLEPNQFAIG 1048 (1096)
Q Consensus 1000 ~vwd~~~~~~~~~~~~~~~~~~~~~--~h--~~~v~s~~l~~s~~d~~~l~s~ 1048 (1096)
...|..+|++...+......+.... .+ ...|.- .|||.|..+++++||
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLN-GIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLN-GIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EE-EEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeE-eEeEeCCCCEEEEEe
Confidence 8899999997776654333221000 01 123554 799998556666665
No 404
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.82 E-value=6.3 Score=47.48 Aligned_cols=113 Identities=15% Similarity=0.172 Sum_probs=66.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCC---C-cEEEEEEeCCCcEEEEE-cC
Q 001343 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN---K-LLCVVTCGDDKLIKVWE-LS 483 (1096)
Q Consensus 409 V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~---~-~~~l~s~s~d~~i~iwd-~~ 483 (1096)
|.+.+.+ .+.++.+-.+|.+..+....+..+..+.+-..-...|.|+++.++. + .-+++.++.|+++++.. ..
T Consensus 542 Iv~~avn--r~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p 619 (1205)
T KOG1898|consen 542 IVKCAVN--RRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDP 619 (1205)
T ss_pred EEEEeec--ceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecC
Confidence 4444443 3456666667777666654333333221222345678999998875 1 11689999999999999 55
Q ss_pred CceEEEe--eCCCCCeEEEEeeecCC-C------cEEEEEECCCeEEEE
Q 001343 484 GRKLFNF--EGHEAPVYSICPHHKEN-I------QFIFSTAIDGKIKAW 523 (1096)
Q Consensus 484 ~~~~~~~--~~~~~~v~~~~~~~~~~-~------~~l~s~~~dg~i~iw 523 (1096)
..++..+ ++-..++.++++-...+ + -+|.+|-.+|.+.-+
T Consensus 620 ~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~ 668 (1205)
T KOG1898|consen 620 SDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF 668 (1205)
T ss_pred cceEEEccccccCCCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence 5555544 44555666655543221 1 256677777766544
No 405
>PHA02713 hypothetical protein; Provisional
Probab=95.77 E-value=0.76 Score=54.25 Aligned_cols=150 Identities=7% Similarity=0.018 Sum_probs=76.3
Q ss_pred CCcEEEEEECCC-----eEEEEEcCCCCeeeEEeCCCC--cEEEEEEcCCCCEEEEEeeccC------------------
Q 001343 507 NIQFIFSTAIDG-----KIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKD------------------ 561 (1096)
Q Consensus 507 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~~~~l~~~~~~~~------------------ 561 (1096)
++.+.+.||.++ ++..||..+..-...-..... ....+ .-+|+..+.||.+..
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccc
Confidence 456777887764 477888775432221111111 11122 235666666664211
Q ss_pred -CCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC------CeEEEEeCCC-CeEEEEeecCCCCCCcc
Q 001343 562 -GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED------SQIKFWDMDN-VNILTSTDAEGGLPNLP 633 (1096)
Q Consensus 562 -~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~ 633 (1096)
.-..+..||..+.+-...-.-... ........-++...+.||.+ ..+..||..+ .+...............
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~-r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTG-TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcc-cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 023577888877654332211111 11111122345666666643 2467899887 55443332222211222
Q ss_pred EEEEeCCCCEEEEEECCC--cEEEEEcCCC
Q 001343 634 RLRFSKEGNLLAVTTADN--GFKILANAIG 661 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg--~i~iwd~~~~ 661 (1096)
.+++ ++.+.++|+.++ .+..||..++
T Consensus 508 ~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 508 TILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred eEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 2222 778899999888 6677777665
No 406
>PRK10115 protease 2; Provisional
Probab=95.77 E-value=6.9 Score=47.57 Aligned_cols=242 Identities=10% Similarity=0.047 Sum_probs=118.2
Q ss_pred ceEEEEEcCCCCcEEEEEeCCC----eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.+..+.+||||++++.+...+| .|++-|+.+|+.+.. .+.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCEE
Confidence 5778899999995443333333 688999988764321 0111 11459999999987
Q ss_pred EEEECC------CeEEEEEccCCCccccceeecccccCEE-EEEEecCCCcEEEEEEe--CCCcEEEEE--c-CCceEEE
Q 001343 422 GVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVN-DLAFAYPNKLLCVVTCG--DDKLIKVWE--L-SGRKLFN 489 (1096)
Q Consensus 422 ~s~~~d------g~i~vwd~~~~~~~~~~~~l~~h~~~v~-~l~~s~d~~~~~l~s~s--~d~~i~iwd--~-~~~~~~~ 489 (1096)
+....+ ..|..+++.++..-... .+........ .+..+.|++.+ ++.+. .++.+.+++ . .+.....
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l-v~~e~~~~~~~~~~~s~d~~~l-~i~~~~~~~~~~~l~~~~~~~~~~~~~ 264 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL-VYEEKDDTFYVSLHKTTSKHYV-VIHLASATTSEVLLLDAELADAEPFVF 264 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeE-EEeeCCCCEEEEEEEcCCCCEE-EEEEECCccccEEEEECcCCCCCceEE
Confidence 766542 36777888877221111 2333233333 33334477753 33322 235788888 2 3432222
Q ss_pred eeCCCCCeEEEEeeecCCCcEEEEEEC---CCeEEEEEcCCCCeeeEEeCC-C-CcEEEEEEcCCCCEEEEEeeccCCCC
Q 001343 490 FEGHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMGSRVDYDAP-G-HWCTTMLYSADGSRLFSCGTSKDGDS 564 (1096)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~-~-~~i~~l~~s~~~~~l~~~~~~~~~~~ 564 (1096)
+.........+. +. .+.+++.... ...|...++........+..+ . ..+..+.+. ++.|+.... .++..
T Consensus 265 ~~~~~~~~~~~~-~~--~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~~ 338 (686)
T PRK10115 265 LPRRKDHEYSLD-HY--QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGLT 338 (686)
T ss_pred EECCCCCEEEEE-eC--CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCEE
Confidence 222222222222 22 2233333322 223433344422222233333 2 367777776 335554432 22344
Q ss_pred eEEEEeCCCCeeeEEEc-CcCccceEEEEEe--CCCC-EEEEEE---cCCeEEEEeCCCCe
Q 001343 565 FLVEWNESEGTIKRTYA-GFRKKSNGVVQFD--TTQN-HFLAVG---EDSQIKFWDMDNVN 618 (1096)
Q Consensus 565 ~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~--~~~~-~l~~~~---~dg~i~iwd~~~~~ 618 (1096)
.+++++..++. +..+. .... .+..+.++ +++. .+++.+ .-+.++.+|..+++
T Consensus 339 ~l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 339 SLRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 56667765433 33333 2111 22223333 3333 343333 45678899988765
No 407
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.72 E-value=1.4 Score=46.00 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=91.5
Q ss_pred CeeeeeecCCCcEEEEec--CCe--EEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEe-ecccee
Q 001343 833 AVPCIALSKNDSYVMSAT--GGK--ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN-VRVDEL 907 (1096)
Q Consensus 833 ~v~~l~~s~dg~~la~~~--dg~--v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~-~~~~~~ 907 (1096)
.+.+.++|+||+.+|... ++. +.++.. +.....+. ....++...|++ ++...++...+...+++. -..+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcc
Confidence 688899999999887766 444 555553 33333321 223788889999 787777777777777764 223320
Q ss_pred eeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-E---ecceEEEEEcc---cc--eec-cccccCCCCCCC
Q 001343 908 CVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-V---HETQLAIYDAS---KM--ERI-RQWTPQDALSAP 977 (1096)
Q Consensus 908 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~---~d~~i~iwd~~---~~--~~~-~~~~~~~~~~~~ 977 (1096)
....+...... ..|..+.+||||..+|. . .++.|.+--+. .+ ..+ ....-.......
T Consensus 101 -----------~~~~v~~~~~~--~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~ 167 (253)
T PF10647_consen 101 -----------EPVEVDWPGLR--GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSD 167 (253)
T ss_pred -----------eeEEecccccC--CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCc
Confidence 01112222211 16899999999999998 3 26788877663 33 111 111111011567
Q ss_pred ceEEEEeeCCcEEEEEecCCc
Q 001343 978 ISCAVYSCNSQLVFATFCDGN 998 (1096)
Q Consensus 978 i~~l~~s~dg~~la~~~~dg~ 998 (1096)
+..++|.+++.+++.+...+.
T Consensus 168 v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred ceeeeecCCCEEEEEeCCCCC
Confidence 899999999998776665443
No 408
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=0.36 Score=57.51 Aligned_cols=98 Identities=17% Similarity=0.253 Sum_probs=70.3
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~ 438 (1096)
++|.|+..|.|...|+...-... .| -..-.++|++++|+.||+.++.|-.+|.|.+||+..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~-----~~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPL-----HQ-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchh-----hc-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 68888899999988876532100 00 1224679999999999999999999999999999998
Q ss_pred CccccceeecccccCEE---EEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 439 NDLRQHSQIDAHVGAVN---DLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 439 ~~~~~~~~l~~h~~~v~---~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+.++. +..|..+.+ .+.+..++. .++++...|. +|.
T Consensus 163 k~l~~---i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 163 KILKV---ITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWK 201 (1206)
T ss_pred cceee---eeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEE
Confidence 88774 333444443 444455555 6788777776 666
No 409
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.54 E-value=2.2 Score=41.75 Aligned_cols=143 Identities=12% Similarity=0.065 Sum_probs=80.6
Q ss_pred ccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC--------CeEEEEeeecCCCcEEEEEECCCeEE
Q 001343 451 VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA--------PVYSICPHHKENIQFIFSTAIDGKIK 521 (1096)
Q Consensus 451 ~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~l~s~~~dg~i~ 521 (1096)
+...+.-..+|+|+ ++ .|.....=.... ..|..-.-+.+|.- --+.++|..+ ...+.++-+.+-+|.
T Consensus 108 knR~NDgkvdP~Gr--yy-~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d-~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YY-GGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSD-AKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCc--ee-eeeeccccccccccccEEEEeccCCCceeeehhccCCcccccccc-CcEEEEEccCceEEe
Confidence 34566677889998 43 332111111222 22222222233322 2245566532 223455666777887
Q ss_pred EEEcC--CC-----CeeeEEeC----CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEE
Q 001343 522 AWLYD--TM-----GSRVDYDA----PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV 590 (1096)
Q Consensus 522 iwd~~--~~-----~~~~~~~~----~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~ 590 (1096)
-||.+ ++ +.+..+.. .....-.+++..+|+..+++-. .+.|...|..+|+.+.++.-... .+++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt~-qits 258 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPTP-QITS 258 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCCC-ceEE
Confidence 88844 22 22222221 1112345566678888777775 88999999999999999988876 7888
Q ss_pred EEEeCC-CCEEEE
Q 001343 591 VQFDTT-QNHFLA 602 (1096)
Q Consensus 591 ~~~~~~-~~~l~~ 602 (1096)
++|... -..+++
T Consensus 259 ccFgGkn~d~~yv 271 (310)
T KOG4499|consen 259 CCFGGKNLDILYV 271 (310)
T ss_pred EEecCCCccEEEE
Confidence 888653 234443
No 410
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.48 E-value=3.3 Score=50.35 Aligned_cols=203 Identities=10% Similarity=0.081 Sum_probs=115.9
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeeccccc------CEEEEEEec----------------CCCcEEEEEEeCCC
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG------AVNDLAFAY----------------PNKLLCVVTCGDDK 475 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~------~v~~l~~s~----------------d~~~~~l~s~s~d~ 475 (1096)
+..|..++.++.|.-.|..+|+.+-+.. ...... ....+.+.. .+. .++.++.|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d-~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~--rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFD-PKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR--RIILPTSDA 270 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEc-CCCCcccccccccccceEEecCCcccccccccccccccCC--EEEEecCCC
Confidence 4566666777777777877776553221 111000 012233321 233 577788899
Q ss_pred cEEEEE-cCCceEEEeeCCCCCeE-------------EEEeeecCCCcEEEEEEC----------CCeEEEEEcCCCCee
Q 001343 476 LIKVWE-LSGRKLFNFEGHEAPVY-------------SICPHHKENIQFIFSTAI----------DGKIKAWLYDTMGSR 531 (1096)
Q Consensus 476 ~i~iwd-~~~~~~~~~~~~~~~v~-------------~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~ 531 (1096)
.+.-.| .+|+.+..+.. .+.|. .+.-.|.-.+..+++|+. +|.|+-+|.++++..
T Consensus 271 ~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999 99999877632 11110 000001101235666643 689999999999988
Q ss_pred eEEeCCC---------C--------cE-EEEEEcCCCCEEEEEeec--------------cCCCCeEEEEeCCCCeeeEE
Q 001343 532 VDYDAPG---------H--------WC-TTMLYSADGSRLFSCGTS--------------KDGDSFLVEWNESEGTIKRT 579 (1096)
Q Consensus 532 ~~~~~~~---------~--------~i-~~l~~s~~~~~l~~~~~~--------------~~~~~~i~iwd~~~~~~~~~ 579 (1096)
..+.... + .+ ..+++.+....++....+ ..-.+.|.-.|.++|+..-.
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 7664310 0 11 234555555555442210 11245677888889988877
Q ss_pred EcC-cCc-------cceEEEEEeC-CCC---EEEEEEcCCeEEEEeCCCCeEEEEee
Q 001343 580 YAG-FRK-------KSNGVVQFDT-TQN---HFLAVGEDSQIKFWDMDNVNILTSTD 624 (1096)
Q Consensus 580 ~~~-~~~-------~~i~~~~~~~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1096)
++. |++ .....+.+.. +|+ .++.++.+|.++++|.++|+.+...+
T Consensus 430 ~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 765 221 0111122322 443 68888899999999999998887654
No 411
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.47 E-value=0.055 Score=38.65 Aligned_cols=31 Identities=19% Similarity=0.461 Sum_probs=28.6
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEcc
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYA 436 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~ 436 (1096)
...|.+++|+|...+||.|+.+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4579999999999999999999999999983
No 412
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.44 E-value=4.3 Score=44.45 Aligned_cols=206 Identities=15% Similarity=0.124 Sum_probs=88.9
Q ss_pred CCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccc-cCCCCEEEEEEcCCCCEEEEEE--C----C
Q 001343 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWSPDGNYVGVAF--T----K 427 (1096)
Q Consensus 355 ~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spd~~~l~s~~--~----d 427 (1096)
+.++|++-|-..+.|.|.|+.+.-..-. -.|+.+.. .+.. ..-+.-..+.--|+|+.++++- . .
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~-l~KvIe~~--------ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~ 156 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPR-LHKVIEPE--------EVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGP 156 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-E-EEEEE-HH--------HHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCc-eEeeeCHH--------HHHhhcCCCCCceeeecCCccEEEEeccCCCCCCC
Confidence 3454444444788999999985321100 01111100 0010 0011122233346888888762 2 2
Q ss_pred CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe--------------------CCCcEEEEE-cCCce
Q 001343 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG--------------------DDKLIKVWE-LSGRK 486 (1096)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s--------------------~d~~i~iwd-~~~~~ 486 (1096)
|-+.+.|-++.+....-..-.+...--+.+-|.|..+ .++|.. ...++.+|| .+.+.
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~ 234 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL 234 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence 4677787776543331111111223346677788776 777764 246899999 88888
Q ss_pred EEEeeCCCC--CeEEEEeeecCCCcEEEEEE-CCCeEEEEEc-CCCC----eeeEEeCC-----------------CCcE
Q 001343 487 LFNFEGHEA--PVYSICPHHKENIQFIFSTA-IDGKIKAWLY-DTMG----SRVDYDAP-----------------GHWC 541 (1096)
Q Consensus 487 ~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~-~~~~----~~~~~~~~-----------------~~~i 541 (1096)
++++.--.. ....+.|...++..+=++++ -..+|..|-- +.++ .+..+... ..-|
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 888764332 34567776666555444433 3444444432 2221 11111110 2347
Q ss_pred EEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 542 ~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
+.+.+|.|.++|..... ..|.|+.||+...
T Consensus 315 tDI~iSlDDrfLYvs~W---~~GdvrqYDISDP 344 (461)
T PF05694_consen 315 TDILISLDDRFLYVSNW---LHGDVRQYDISDP 344 (461)
T ss_dssp --EEE-TTS-EEEEEET---TTTEEEEEE-SST
T ss_pred EeEEEccCCCEEEEEcc---cCCcEEEEecCCC
Confidence 89999999999998776 5899999999763
No 413
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.43 E-value=1.7 Score=44.38 Aligned_cols=122 Identities=13% Similarity=0.140 Sum_probs=86.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCC
Q 001343 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1096)
Q Consensus 536 ~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1096)
+....+.++.|+|+.+.|++... ...-.++=...|+.++++.-..-.....+.+..++.++++--.++.++++.+.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n----~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTN----KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccceeeCCCcceEEEecC----CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 33446999999999999998875 45555555677899988765433345557888888777777788999999887
Q ss_pred CCeEEEE-----ee--cC-CCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 616 NVNILTS-----TD--AE-GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 616 ~~~~~~~-----~~--~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
....+.. +. .. ......-.++|.|....|..+-.-.-+.||....+
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~ 212 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQS 212 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecC
Confidence 6532211 11 11 11335778999999988888888888888887643
No 414
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.43 E-value=3.8 Score=42.30 Aligned_cols=231 Identities=13% Similarity=0.056 Sum_probs=120.9
Q ss_pred CccEEEEeCCCCEEEEEECCCcEEEEEcCC------CccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEe
Q 001343 631 NLPRLRFSKEGNLLAVTTADNGFKILANAI------GLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE 704 (1096)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~ 704 (1096)
.-+.|+++|.+.+.++....+...+||... ...+.-.+...........++.+.|+....+.++....
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~------ 97 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI------ 97 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc------
Confidence 357899999999999888889999999862 11222233322222223345667776655554333210
Q ss_pred ccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecC--CceEEEEcCCCCCCcccEEEEEEec--CCceEE
Q 001343 705 RSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDS--GQCRLVTMPESTDTSSKVVRLLYTN--SAVGLL 780 (1096)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~s~--~~~~l~ 780 (1096)
.-...++.+++||+|.-|...-.... .... .+.. .....--..+++.. .+..|.
T Consensus 98 -------------------~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~--~~d~-s~~gavYkGLAi~~~~~~~~LY 155 (336)
T TIGR03118 98 -------------------TGPSRFLFVTEDGTLSGWAPALGTTRMTRAEI--VVDA-SQQGNVYKGLAVGPTGGGDYLY 155 (336)
T ss_pred -------------------ccceeEEEEeCCceEEeecCcCCcccccccEE--EEcc-CCCcceeeeeEEeecCCCceEE
Confidence 00123567788899999985421110 1111 1211 00111223444443 345555
Q ss_pred Eeec-CCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeee---------eeecCCCcEEEEec
Q 001343 781 ALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC---------IALSKNDSYVMSAT 850 (1096)
Q Consensus 781 ~~~~-dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~---------l~~s~dg~~la~~~ 850 (1096)
++.- +++|.+||-........+... |+ .++...-...|.. ..-.++++.=+.+.
T Consensus 156 aadF~~g~IDVFd~~f~~~~~~g~F~--------DP--------~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~ 219 (336)
T TIGR03118 156 AANFRQGRIDVFKGSFRPPPLPGSFI--------DP--------ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGA 219 (336)
T ss_pred EeccCCCceEEecCccccccCCCCcc--------CC--------CCCCCCCCcceEEECCeEEEEEEecCCcccccccCC
Confidence 5544 788888875433221111110 00 0110000111111 11122222111222
Q ss_pred -CCeEEEEEcccceEEEeec--CCCCCeeEEEEecC-----CCcEEEEeeCCCeEEEEeeccce
Q 001343 851 -GGKISLFNMMTFKVMTTFM--SPPPASTFLAFHPQ-----DNNIIAIGTEDSTIHIYNVRVDE 906 (1096)
Q Consensus 851 -dg~v~iwd~~~~~~~~~~~--~h~~~i~~l~~s~~-----d~~~l~s~~~dg~i~iw~~~~~~ 906 (1096)
-|.|-+||. +|++++++. +.-..-+.|+..|. .+.+|+--..||+|..+|..++.
T Consensus 220 G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 220 GLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 367999997 788888874 33345667777552 46688877889999999998877
No 415
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.88 E-value=5.3 Score=40.94 Aligned_cols=185 Identities=8% Similarity=0.034 Sum_probs=113.3
Q ss_pred CCCEEEEEEcCCCCEEEEEECCC--eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~ 482 (1096)
..-...+.|..+|.++-+.+.-| .|+.+|+.+|+..+.. .+.. .----.++...| + +..-.=.++...+|| .
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~-~l~~-~~FgEGit~~~d-~--l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV-PLPP-RYFGEGITILGD-K--LYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE-E-TT-T--EEEEEEETT-E--EEEEESSSSEEEEEETT
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE-ECCc-cccceeEEEECC-E--EEEEEecCCeEEEEccc
Confidence 34466788878888888877766 7999999998766532 2221 112233444422 2 333344578899999 7
Q ss_pred CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC--CC---cEEEEEEcCCCCEEEEEe
Q 001343 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GH---WCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~---~i~~l~~s~~~~~l~~~~ 557 (1096)
+-+.+.++.- .+.=+.++. +++.|+.......++++|..+.+....+... +. .++.+.+- +|. +.+.-
T Consensus 119 tl~~~~~~~y-~~EGWGLt~----dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANV 191 (264)
T PF05096_consen 119 TLKKIGTFPY-PGEGWGLTS----DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANV 191 (264)
T ss_dssp TTEEEEEEE--SSS--EEEE----CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEE
T ss_pred cceEEEEEec-CCcceEEEc----CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEe
Confidence 7888887763 345567763 5567777777889999998887766554432 22 45667775 454 43332
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcC-----------c---CccceEEEEEeCCCCEEEEEEc
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAG-----------F---RKKSNGVVQFDTTQNHFLAVGE 605 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~-----------~---~~~~i~~~~~~~~~~~l~~~~~ 605 (1096)
. ....|...|..+|+.+..+.. . .....+.+++.|..+.+++.|.
T Consensus 192 W---~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 192 W---QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp T---TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred C---CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 2 267888899999998887631 0 1236888999998877777664
No 416
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.82 E-value=0.031 Score=54.24 Aligned_cols=88 Identities=14% Similarity=0.041 Sum_probs=53.5
Q ss_pred EEEEEeCCCcEEEEE--cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC-CcEEE
Q 001343 467 CVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTT 543 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~ 543 (1096)
.++.|+.+|.|.+|+ ..|.....+..-...|-++... ..++.+..+++.||.||.|++...+..-....|+ .++..
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~-~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN-GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceecccc-ccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence 588899999999998 3444333333333344443322 3345688899999999999988776665555555 23333
Q ss_pred EEEcCCCCEEEE
Q 001343 544 MLYSADGSRLFS 555 (1096)
Q Consensus 544 l~~s~~~~~l~~ 555 (1096)
...+..++++..
T Consensus 151 ~ivv~sd~~i~~ 162 (238)
T KOG2444|consen 151 LIVVGSDEFLKI 162 (238)
T ss_pred eEEecCCceEEe
Confidence 333333333333
No 417
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.69 E-value=8.8 Score=46.78 Aligned_cols=195 Identities=12% Similarity=0.117 Sum_probs=114.1
Q ss_pred EEEEEeCCCcEEEEE-cCCceEEEeeCCCCC--------eEEEEeee--------------cCCCcEEEEEECCCeEEEE
Q 001343 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP--------VYSICPHH--------------KENIQFIFSTAIDGKIKAW 523 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~--------v~~~~~~~--------------~~~~~~l~s~~~dg~i~iw 523 (1096)
.++.++.++.|.-.| .+|+.+.++...... ...+.+.. ...+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 466667777788888 778777666432110 11222221 1123478889999999999
Q ss_pred EcCCCCeeeEEeCCCCcE-------------EEEEEcC--CCCEEEEEeeccC------CCCeEEEEeCCCCeeeEEEcC
Q 001343 524 LYDTMGSRVDYDAPGHWC-------------TTMLYSA--DGSRLFSCGTSKD------GDSFLVEWNESEGTIKRTYAG 582 (1096)
Q Consensus 524 d~~~~~~~~~~~~~~~~i-------------~~l~~s~--~~~~l~~~~~~~~------~~~~i~iwd~~~~~~~~~~~~ 582 (1096)
|.++++....+..... + ..+.-.| .+..+++++...+ ..+.|+-+|.++|+.+-.+..
T Consensus 276 DA~TGk~~W~fg~~G~-vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 276 DADTGKLCEDFGNNGT-VDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP 354 (764)
T ss_pred ECCCCCEEEEecCCCc-eeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence 9999888876532211 1 0111111 1335555543222 268899999999998877652
Q ss_pred cC---------c--------cceEEEEEeCCCCEEEEEE------------------cCCeEEEEeCCCCeEEEEeecCC
Q 001343 583 FR---------K--------KSNGVVQFDTTQNHFLAVG------------------EDSQIKFWDMDNVNILTSTDAEG 627 (1096)
Q Consensus 583 ~~---------~--------~~i~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~ 627 (1096)
-. + ..-...++++....++.+. ..+.|.-.|.++|+....++...
T Consensus 355 g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~ 434 (764)
T TIGR03074 355 GNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVH 434 (764)
T ss_pred CCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccC
Confidence 10 0 0112345555555554422 23567778888998887776532
Q ss_pred CC-------CCccEEEEeC-CCC---EEEEEECCCcEEEEEcCCCc
Q 001343 628 GL-------PNLPRLRFSK-EGN---LLAVTTADNGFKILANAIGL 662 (1096)
Q Consensus 628 ~~-------~~v~~~~~s~-~~~---~l~~~~~dg~i~iwd~~~~~ 662 (1096)
|. ....-+.+.. +|+ .++.++.+|.+.++|..+|+
T Consensus 435 hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 435 HDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred CccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 21 0111122322 553 78899999999999999983
No 418
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.62 E-value=2.9 Score=50.34 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=53.0
Q ss_pred cCCCeeeeeecCCCcEEEEecCCeEEEEEccc----------ceE--E-Eee--------cCCCCCeeEEEEecC--CCc
Q 001343 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMT----------FKV--M-TTF--------MSPPPASTFLAFHPQ--DNN 886 (1096)
Q Consensus 830 ~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~----------~~~--~-~~~--------~~h~~~i~~l~~s~~--d~~ 886 (1096)
....|..+.++|+|++||..+...|.|..+.. |+. . +++ ..+...|..+.|+|. ++.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 45689999999999999999876655555521 111 1 111 133456788999883 257
Q ss_pred EEEEeeCCCeEEEEeeccce
Q 001343 887 IIAIGTEDSTIHIYNVRVDE 906 (1096)
Q Consensus 887 ~l~s~~~dg~i~iw~~~~~~ 906 (1096)
.|++-+.|+++|+||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 88888999999999986433
No 419
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.59 E-value=7.5 Score=41.32 Aligned_cols=158 Identities=13% Similarity=0.109 Sum_probs=82.4
Q ss_pred cCCCeeeeeecCCCcEEEEecCCeE-EEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceee
Q 001343 830 LEEAVPCIALSKNDSYVMSATGGKI-SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELC 908 (1096)
Q Consensus 830 ~~~~v~~l~~s~dg~~la~~~dg~v-~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~ 908 (1096)
....+..+..++||++++++..|.+ .-||--...-...-+.-...|..|.|.| ++.+.+.+ ..|.|+.=+..... -
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~-~ 219 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDG-E 219 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEE-E
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCc-c
Confidence 3466888899999999999997764 5677422112222223457899999999 77665544 88888877622211 1
Q ss_pred eeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCc
Q 001343 909 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ 988 (1096)
Q Consensus 909 ~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 988 (1096)
.|... +....... -.+..+++.+++...|++..+.| +...+.|+.=..........+..+.+.|.++.+
T Consensus 220 ~w~~~---------~~~~~~~~-~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~ 288 (302)
T PF14870_consen 220 TWSEP---------IIPIKTNG-YGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK 288 (302)
T ss_dssp EE------------B-TTSS---S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTE
T ss_pred ccccc---------cCCcccCc-eeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCc
Confidence 22211 11111111 15789999999998888877755 445555654333322111266788999987766
Q ss_pred EEEEEecCCcEEEE
Q 001343 989 LVFATFCDGNIGVF 1002 (1096)
Q Consensus 989 ~la~~~~dg~i~vw 1002 (1096)
-++ .+.+|.+.-|
T Consensus 289 gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 289 GFV-LGQDGVLLRY 301 (302)
T ss_dssp EEE-E-STTEEEEE
T ss_pred eEE-ECCCcEEEEe
Confidence 666 5567766544
No 420
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.53 E-value=0.96 Score=52.59 Aligned_cols=111 Identities=13% Similarity=0.159 Sum_probs=75.1
Q ss_pred CEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEee-CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcC----
Q 001343 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD---- 526 (1096)
Q Consensus 453 ~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~---- 526 (1096)
...-+.-+.-++ ..+.-+...++.||| ..+.....-. ...+.|.++.|...++++.+++.|..+.|.++.-.
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344444444455 344444556899999 6555433322 35788999999999999999999999999998532
Q ss_pred -CCC----eee--EEeC-CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC
Q 001343 527 -TMG----SRV--DYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 527 -~~~----~~~--~~~~-~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~ 571 (1096)
... .+. .+.. ..++|.+..|.++|..++.+ ++.+.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s------GNqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS------GNQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe------CCEEEEECC
Confidence 111 111 1222 33689999999999888776 457888874
No 421
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.29 E-value=6.9 Score=46.23 Aligned_cols=233 Identities=12% Similarity=0.055 Sum_probs=113.8
Q ss_pred EEEEEeCC------CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECC-----
Q 001343 359 LLLVGSSN------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK----- 427 (1096)
Q Consensus 359 llasg~~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d----- 427 (1096)
+++.|+.+ ..|..+|..+++-..-.. +. +...-.+++.. ++...++||.|
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~-----------------m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAP-----------------MP-SPRCRVGVAVL-NGKLYVVGGYDSGSDR 347 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCC-----------------CC-cccccccEEEE-CCEEEEEccccCCCcc
Confidence 67777776 378888888775432100 11 11123333333 45777888888
Q ss_pred -CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC-----cEEEEE-cCCceEEEeeCCCCCeEEE
Q 001343 428 -HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-----LIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 428 -g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~-----~i~iwd-~~~~~~~~~~~~~~~v~~~ 500 (1096)
.++..||..+++-.. ...+...........+ +|. +.|.||.|| +|-.|| .+.+- ........+....
T Consensus 348 l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l--~g~--iYavGG~dg~~~l~svE~YDp~~~~W-~~va~m~~~r~~~ 421 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVL--DGK--LYAVGGFDGEKSLNSVECYDPVTNKW-TPVAPMLTRRSGH 421 (571)
T ss_pred cceEEEecCCCCceec-cCCccCccccceeEEE--CCE--EEEEeccccccccccEEEecCCCCcc-cccCCCCcceeee
Confidence 357788887765222 1122222222222222 455 778888886 466777 33322 1111121122222
Q ss_pred EeeecCCCcEEEEEECCC------eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc-CCCCeEEEEeCCC
Q 001343 501 CPHHKENIQFIFSTAIDG------KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK-DGDSFLVEWNESE 573 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~-~~~~~i~iwd~~~ 573 (1096)
....- +|.+.++||.++ ++..||..+..-...-.........-...-++...+.||.+. .....+..||..+
T Consensus 422 gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 422 GVAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred EEEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCC
Confidence 22111 567788888654 456777766544332222211111112223555666666422 1123477788877
Q ss_pred CeeeEEE--cCcCccceEEEEEeCCCCEEEEEEcCC-----eEEEEeCCCCeEE
Q 001343 574 GTIKRTY--AGFRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNIL 620 (1096)
Q Consensus 574 ~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~ 620 (1096)
.+....- ..... ....+. -++...++|+.|| +|..||..+.+..
T Consensus 501 ~~W~~v~~m~~~rs-~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 501 NQWTMVAPMTSPRS-AVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred CceeEcccCccccc-cccEEE--ECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 6554431 11111 222122 2456667777665 4666666655443
No 422
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.06 E-value=0.17 Score=49.35 Aligned_cols=100 Identities=15% Similarity=0.202 Sum_probs=57.8
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEE-EEcCCCCEEEEEECCCeEEEEEccC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV-AWSPDGNYVGVAFTKHLIQLYSYAG 437 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l-~~spd~~~l~s~~~dg~i~vwd~~~ 437 (1096)
-+++|+.+|.|.+|++........ ....-...|.++ .--.++.+..+++.||.|+.|++.-
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d------------------~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p 133 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSD------------------RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP 133 (238)
T ss_pred eEEeecccceEEEecCCccchHHH------------------hhhcccccceeccccccccceeEEeccCCceeeecccc
Confidence 388899999999999862211110 011122233333 3334667889999999999999987
Q ss_pred CCccccceeecccc-cCEEEEEEecCCCcEEEEEE--eCCCcEEEEE
Q 001343 438 SNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTC--GDDKLIKVWE 481 (1096)
Q Consensus 438 ~~~~~~~~~l~~h~-~~v~~l~~s~d~~~~~l~s~--s~d~~i~iwd 481 (1096)
++.+. ....|. .++.....+..++ .++.. |.|..++.|+
T Consensus 134 ~k~~g---~~g~h~~~~~e~~ivv~sd~--~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 134 NKVLG---YVGQHNFESGEELIVVGSDE--FLKIADTSHDRVLKKWN 175 (238)
T ss_pred Cceee---eeccccCCCcceeEEecCCc--eEEeeccccchhhhhcc
Confidence 66554 233455 3444444443444 34444 4555555555
No 423
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.88 E-value=13 Score=44.98 Aligned_cols=98 Identities=7% Similarity=0.119 Sum_probs=58.3
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCc
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 485 (1096)
.-.|..|.++|+|++||..|..|. .|..+-.. ......+.+-...|.|=.+.=+.. +..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r--~g~~~~~~~g~~~i~Crt~~v~~~---~~~--------------- 142 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRR--WGKNGEFEDGKKEINCRTVPVDER---FFT--------------- 142 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccc--cCccccccCCCcceeEEEEEechh---hcc---------------
Confidence 457999999999999999888654 44443210 000001222233343333332222 111
Q ss_pred eEEEeeCCCCCeEEEEeeecC-CCcEEEEEECCCeEEEEEcCCCC
Q 001343 486 KLFNFEGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDTMG 529 (1096)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~ 529 (1096)
..+...|..+.|||.. ++..|++-..|+++|+||+....
T Consensus 143 -----~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 143 -----SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred -----CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 1234557788898864 45788888999999999987543
No 424
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.80 E-value=12 Score=40.83 Aligned_cols=188 Identities=14% Similarity=0.165 Sum_probs=107.5
Q ss_pred EEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEEEEeee--cCCCcE--EEEEE-CC---CeEEEEEcCCCCe-eeEEeC-
Q 001343 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH--KENIQF--IFSTA-ID---GKIKAWLYDTMGS-RVDYDA- 536 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~--l~s~~-~d---g~i~iwd~~~~~~-~~~~~~- 536 (1096)
+++....++-+.+||..|+.+..+. .+.++.+.... .-+|+. |+.++ .+ .+|++|.++.... +..+..
T Consensus 70 lIigTdK~~GL~VYdL~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~ 147 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDP 147 (381)
T ss_dssp EEEEEETTTEEEEEETTS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBT
T ss_pred eEEEEeCCCCEEEEcCCCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCC
Confidence 6777888899999999999998885 34566554321 112222 34443 22 4799998874322 222221
Q ss_pred ------CCCcEEEEEE--cC-CCCEEEEEeeccCCCCeEEEEeCC---CC----eeeEEEcCcCccceEEEEEeCCCCEE
Q 001343 537 ------PGHWCTTMLY--SA-DGSRLFSCGTSKDGDSFLVEWNES---EG----TIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1096)
Q Consensus 537 ------~~~~i~~l~~--s~-~~~~l~~~~~~~~~~~~i~iwd~~---~~----~~~~~~~~~~~~~i~~~~~~~~~~~l 600 (1096)
....++.+|+ ++ +|.+.+.... .+|.+..|.+. .+ +.++.|.... .+..|........|
T Consensus 148 ~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~---k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~L 222 (381)
T PF02333_consen 148 AAPIATDLSEPYGLCLYRSPSTGALYAFVNG---KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGRL 222 (381)
T ss_dssp TC-EE-SSSSEEEEEEEE-TTT--EEEEEEE---TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTEE
T ss_pred CcccccccccceeeEEeecCCCCcEEEEEec---CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCCE
Confidence 1124667776 33 4554444332 16777766653 33 4678887654 57778888888899
Q ss_pred EEEEcCCeEEEEeCCC-----CeEEEEeecCCCCCCccEEEEeC--CC--CEEEEEECCCcEEEEEcCCC
Q 001343 601 LAVGEDSQIKFWDMDN-----VNILTSTDAEGGLPNLPRLRFSK--EG--NLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 601 ~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~s~--~~--~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+.+-++.-|.-|+.+. +..+.......-...|-.++.-. ++ .+|++.-.+++..+|+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999998888888763 22333333322334566777643 33 34444445788999997654
No 425
>PRK13684 Ycf48-like protein; Provisional
Probab=93.72 E-value=13 Score=40.75 Aligned_cols=156 Identities=12% Similarity=0.055 Sum_probs=92.3
Q ss_pred CCCeeeeeecCCCcEEEEecCCeEEEE-Ecccce-EEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceee
Q 001343 831 EEAVPCIALSKNDSYVMSATGGKISLF-NMMTFK-VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELC 908 (1096)
Q Consensus 831 ~~~v~~l~~s~dg~~la~~~dg~v~iw-d~~~~~-~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~ 908 (1096)
...+.++.+.|++.+++++..|.+..- +- .++ -...-..-...++++.+.+ +++.+++| ..|.+++=.-+.+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~-- 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLE-- 246 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCC--
Confidence 456788999999999988888876532 21 222 2222223446788999999 78776654 56765432233332
Q ss_pred eeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCc
Q 001343 909 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ 988 (1096)
Q Consensus 909 ~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 988 (1096)
.|.. +..+.......+..+.|.+++..++++.+|.+. ...+.|+.-...............+.|..+++
T Consensus 247 sW~~----------~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~ 315 (334)
T PRK13684 247 SWSK----------PIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK 315 (334)
T ss_pred cccc----------ccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCc
Confidence 2221 111111111157889999998888778877665 34555554333321111134577788877777
Q ss_pred EEEEEecCCcEEEEe
Q 001343 989 LVFATFCDGNIGVFD 1003 (1096)
Q Consensus 989 ~la~~~~dg~i~vwd 1003 (1096)
.++ .+..|.|..|+
T Consensus 316 ~~~-~G~~G~il~~~ 329 (334)
T PRK13684 316 GFV-LGQRGVLLRYV 329 (334)
T ss_pred eEE-ECCCceEEEec
Confidence 766 56677877775
No 426
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.71 E-value=10 Score=39.57 Aligned_cols=150 Identities=15% Similarity=0.101 Sum_probs=83.9
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~ 425 (1096)
.+...++|++|+.+.++...++.-.||-...+..... .+ ....+..-.|++++...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~------------------~~--~g~~l~~PS~d~~g~~W~v~~ 84 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP------------------VL--TGGSLTRPSWDPDGWVWTVDD 84 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee------------------ec--cCCccccccccCCCCEEEEEc
Confidence 7899999999996555553344333443333332211 02 223778889999988777776
Q ss_pred CCCeEEEEE-ccCCCccccceeecccccCEEEEEEecCCCcEEEEE-EeCCCcEEEEE----cCC------ceEEEeeCC
Q 001343 426 TKHLIQLYS-YAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVT-CGDDKLIKVWE----LSG------RKLFNFEGH 493 (1096)
Q Consensus 426 ~dg~i~vwd-~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s-~s~d~~i~iwd----~~~------~~~~~~~~~ 493 (1096)
.+...+++. ..++...........-.+.|..+.++|||.++.++. ...++.|.+=- ..+ ..+......
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~ 164 (253)
T PF10647_consen 85 GSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL 164 (253)
T ss_pred CCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc
Confidence 666666664 333332221111222222899999999999643333 12346666653 233 111222233
Q ss_pred CCCeEEEEeeecCCCcEEEEEECC
Q 001343 494 EAPVYSICPHHKENIQFIFSTAID 517 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~d 517 (1096)
...+..+.|.. ++.+++.+...
T Consensus 165 ~~~v~~v~W~~--~~~L~V~~~~~ 186 (253)
T PF10647_consen 165 LSDVTDVAWSD--DSTLVVLGRSA 186 (253)
T ss_pred cCcceeeeecC--CCEEEEEeCCC
Confidence 56788999965 44555555443
No 427
>PHA03098 kelch-like protein; Provisional
Probab=93.65 E-value=4.6 Score=47.97 Aligned_cols=194 Identities=8% Similarity=0.037 Sum_probs=97.6
Q ss_pred CCCcEEEEec-C------CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCC-----eEEEEeeccceee
Q 001343 841 KNDSYVMSAT-G------GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS-----TIHIYNVRVDELC 908 (1096)
Q Consensus 841 ~dg~~la~~~-d------g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg-----~i~iw~~~~~~~~ 908 (1096)
.++.+++.|+ + ..+..||..+.+....-.-+......-+..- ++++++.||.++ .+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~-- 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-NNRIYVIGGIYNSISLNTVESWKPGESK-- 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-CCEEEEEeCCCCCEecceEEEEcCCCCc--
Confidence 4666767765 2 1477888877665332111111111112233 677888888763 46677776654
Q ss_pred eeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Ee--c----ceEEEEEcccceecc--ccccCCCCCCCce
Q 001343 909 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VH--E----TQLAIYDASKMERIR--QWTPQDALSAPIS 979 (1096)
Q Consensus 909 ~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~--d----~~i~iwd~~~~~~~~--~~~~~~~~~~~i~ 979 (1096)
|..- ..+..... . .++ ..-+++..+. |. + ..+..||..+.+-.. .+... . ..
T Consensus 370 -W~~~----------~~lp~~r~-~-~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~---r--~~ 430 (534)
T PHA03098 370 -WREE----------PPLIFPRY-N-PCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS---H--YG 430 (534)
T ss_pred -eeeC----------CCcCcCCc-c-ceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc---c--cC
Confidence 4321 11111110 1 112 2335666665 42 1 458899987665322 22111 1 11
Q ss_pred EEEEeeCCcEEEEEecCC--------cEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeC
Q 001343 980 CAVYSCNSQLVFATFCDG--------NIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD 1051 (1096)
Q Consensus 980 ~l~~s~dg~~la~~~~dg--------~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~d 1051 (1096)
..+...++++.+.|+.++ .+.+||..+.+....-. .+.. + .-.+ .+.+ ++.+++.|+.+
T Consensus 431 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~----~~~~---r--~~~~-~~~~---~~~iyv~GG~~ 497 (534)
T PHA03098 431 GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS----LNFP---R--INAS-LCIF---NNKIYVVGGDK 497 (534)
T ss_pred ceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC----CCcc---c--ccce-EEEE---CCEEEEEcCCc
Confidence 223345777777776432 37888988876432211 1111 0 1111 1222 57888888765
Q ss_pred -----CcEEEEccCCCCCccccCCC
Q 001343 1052 -----GSVKVMEPSESEGKWGVSPP 1071 (1096)
Q Consensus 1052 -----g~i~vW~v~~~~~~~~~~~~ 1071 (1096)
+.|.++|+.+ ..|...++
T Consensus 498 ~~~~~~~v~~yd~~~--~~W~~~~~ 520 (534)
T PHA03098 498 YEYYINEIEVYDDKT--NTWTLFCK 520 (534)
T ss_pred CCcccceeEEEeCCC--CEEEecCC
Confidence 4688888766 55765443
No 428
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.57 E-value=10 Score=39.10 Aligned_cols=170 Identities=11% Similarity=0.099 Sum_probs=102.5
Q ss_pred ecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEee--CCCCCeEEEEeeecCCCcEEEEEECCCeEEEE
Q 001343 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523 (1096)
Q Consensus 447 l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 523 (1096)
+.+-...+.++.|+|+.+ .|++......-.||= .+|+.+.++. +... .-.+.+ -+++++.++--.++.+.++
T Consensus 81 i~g~~~nvS~LTynp~~r--tLFav~n~p~~iVElt~~GdlirtiPL~g~~D-pE~Iey--ig~n~fvi~dER~~~l~~~ 155 (316)
T COG3204 81 ILGETANVSSLTYNPDTR--TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-PETIEY--IGGNQFVIVDERDRALYLF 155 (316)
T ss_pred cccccccccceeeCCCcc--eEEEecCCCceEEEEecCCceEEEecccccCC-hhHeEE--ecCCEEEEEehhcceEEEE
Confidence 445566699999999999 666666666666766 9999998764 2221 233444 2366777777778888888
Q ss_pred EcCCCCeeeEE----------eCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe---eeEEEcCcCc-----
Q 001343 524 LYDTMGSRVDY----------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRK----- 585 (1096)
Q Consensus 524 d~~~~~~~~~~----------~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~----- 585 (1096)
.++........ ...+...-.++|.|....++.+-. ..-+.|+...... .+.....+..
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE----r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f 231 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE----RNPIGIFEVTQSPSSLSVHASLDPTADRDLF 231 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc----cCCcEEEEEecCCcccccccccCcccccceE
Confidence 77655333211 112446788999999888887754 3444444433221 1111111111
Q ss_pred -cceEEEEEeCCCC-EEEEEEcCCeEEEEeCCCCeEEEEeecC
Q 001343 586 -KSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1096)
Q Consensus 586 -~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1096)
..++.+.|++..+ .++-+.+++.+.-.|... ..+..+...
T Consensus 232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G-~~~~~lsL~ 273 (316)
T COG3204 232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG-EVIELLSLT 273 (316)
T ss_pred eeccccceecCCCCcEEEEecCCceEEEEecCC-CeeeeEEec
Confidence 1455677877554 455566777787777654 445544433
No 429
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.55 E-value=13 Score=43.29 Aligned_cols=200 Identities=10% Similarity=0.096 Sum_probs=101.2
Q ss_pred CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccce
Q 001343 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445 (1096)
Q Consensus 366 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 445 (1096)
--.|+|+++. |+.+.. ++-.|. .+..+.|+.+..+| +...+|++.||++-.. .+....
T Consensus 63 ~~~I~If~~s-G~lL~~------------------~~w~~~-~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~ge-~ie~~s 120 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGR------------------ILWKHG-ELIGMGWSDDEELI-CVQKDGTVHVYGLLGE-FIESNS 120 (829)
T ss_pred ceeEEEEecc-ccchHH------------------HHhcCC-CeeeecccCCceEE-EEeccceEEEeecchh-hhcccc
Confidence 4468888864 555432 122243 78899999776555 4668999999998642 222110
Q ss_pred -eecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeC---CCCCeEEEEee-ecCCCcEEEEEE-CCC
Q 001343 446 -QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG---HEAPVYSICPH-HKENIQFIFSTA-IDG 518 (1096)
Q Consensus 446 -~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~---~~~~v~~~~~~-~~~~~~~l~s~~-~dg 518 (1096)
-.......|..+.|...| ++.-..+|.+.+-+ .....++++.. ...+-.|.... +......++-.. ..|
T Consensus 121 vg~e~~~~~I~ec~~f~~G----Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~ 196 (829)
T KOG2280|consen 121 VGFESQMSDIVECRFFHNG----VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG 196 (829)
T ss_pred cccccccCceeEEEEecCc----eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh
Confidence 012233456666666555 33334456666655 33333333322 11111111111 111111111111 011
Q ss_pred eEEEEEcCCC-CeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC
Q 001343 519 KIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT 596 (1096)
Q Consensus 519 ~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 596 (1096)
..++..+.. .....+......+..+.+||+.++|+.-.. .|.|.+-+....+....+..........++|..+
T Consensus 197 -~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~----~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 197 -LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE----TGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred -hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec----CCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence 011111111 111222333457888999999999998876 8888888877766666665332222223555443
No 430
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.55 E-value=12 Score=40.61 Aligned_cols=119 Identities=12% Similarity=0.186 Sum_probs=77.8
Q ss_pred eeecCCCCcceEEeec--CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCcccccccccc
Q 001343 327 TWSLDDLPRTVAVSLH--QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~--h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
-|....+...+...+. .+++|.++.||+|.+ ++|+--.+.+|.+.+....+...... +..+.
T Consensus 47 gvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~---------------~~ck~ 110 (657)
T KOG2377|consen 47 GVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYT---------------QECKT 110 (657)
T ss_pred EEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHH---------------HHhcc
Confidence 4444443334444433 677999999999999 79999999999999985433321100 01223
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCc
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~ 465 (1096)
.+..|....|+.+ .-+|..... -+-+|-+...+ +..+..+.|+..|....|.++.+-
T Consensus 111 k~~~IlGF~W~~s-~e~A~i~~~-G~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v 167 (657)
T KOG2377|consen 111 KNANILGFCWTSS-TEIAFITDQ-GIEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAV 167 (657)
T ss_pred CcceeEEEEEecC-eeEEEEecC-CeEEEEEchhh--hhhhhhhhcccCccEEEEccccce
Confidence 4556899999876 556655544 45667665432 222245678999999999999884
No 431
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.42 E-value=9.9 Score=38.55 Aligned_cols=242 Identities=12% Similarity=0.091 Sum_probs=134.1
Q ss_pred cCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCC
Q 001343 722 SRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPS 801 (1096)
Q Consensus 722 ~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~ 801 (1096)
..+||..-.++...+.|--.|.. +++...+.+. .......+..-|||..-++-+..+..++
T Consensus 69 papdG~VWft~qg~gaiGhLdP~----tGev~~ypLg----~Ga~Phgiv~gpdg~~Witd~~~aI~R~----------- 129 (353)
T COG4257 69 PAPDGAVWFTAQGTGAIGHLDPA----TGEVETYPLG----SGASPHGIVVGPDGSAWITDTGLAIGRL----------- 129 (353)
T ss_pred cCCCCceEEecCccccceecCCC----CCceEEEecC----CCCCCceEEECCCCCeeEecCcceeEEe-----------
Confidence 34555555555544555444443 4555555543 3344556667777765555444422222
Q ss_pred CceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeecCCC-CCeeEEEE
Q 001343 802 GKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPP-PASTFLAF 880 (1096)
Q Consensus 802 g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~-~~i~~l~~ 880 (1096)
+.++...-...+++...........|.+.|.+-+++..|.---.|- ....+.++.... ..-..|+.
T Consensus 130 ------------dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdP-a~~~i~vfpaPqG~gpyGi~a 196 (353)
T COG4257 130 ------------DPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDP-ARNVISVFPAPQGGGPYGICA 196 (353)
T ss_pred ------------cCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCc-ccCceeeeccCCCCCCcceEE
Confidence 2222222222233322355678899999999999987432111121 112233333222 34567888
Q ss_pred ecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEc
Q 001343 881 HPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDA 959 (1096)
Q Consensus 881 s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~ 959 (1096)
.| ||...++.-.+..|-.-|-.++. ...+..+++... ....+--+|.|+.-++ ...+.+.-+|-
T Consensus 197 tp-dGsvwyaslagnaiaridp~~~~-------------aev~p~P~~~~~-gsRriwsdpig~~wittwg~g~l~rfdP 261 (353)
T COG4257 197 TP-DGSVWYASLAGNAIARIDPFAGH-------------AEVVPQPNALKA-GSRRIWSDPIGRAWITTWGTGSLHRFDP 261 (353)
T ss_pred CC-CCcEEEEeccccceEEcccccCC-------------cceecCCCcccc-cccccccCccCcEEEeccCCceeeEeCc
Confidence 89 78877776666666666655543 223444444332 4555666788887777 56778888887
Q ss_pred ccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEE
Q 001343 960 SKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCY 1012 (1096)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~ 1012 (1096)
....-+.--.++. ...-.++.+...|+.-.+-..-|.|.-+|.++.++...
T Consensus 262 s~~sW~eypLPgs--~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~ 312 (353)
T COG4257 262 SVTSWIEYPLPGS--KARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVL 312 (353)
T ss_pred ccccceeeeCCCC--CCCcceeeeccCCcEEeeccccCceeecCcccceEEEe
Confidence 6554222212222 55566777777777666555667777777777665443
No 432
>PHA03098 kelch-like protein; Provisional
Probab=93.25 E-value=3.7 Score=48.69 Aligned_cols=152 Identities=8% Similarity=-0.009 Sum_probs=71.5
Q ss_pred CCcEEEEEECC-----CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCC--CCeEEEEeCCCCeeeEE
Q 001343 507 NIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG--DSFLVEWNESEGTIKRT 579 (1096)
Q Consensus 507 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~ 579 (1096)
++.+++.||.+ ..+..||..+..-...-..........+..-+++..+.||....+ -..+..||..+.+....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 45677777765 246667766543222111111111111122355666666532211 25688899887654332
Q ss_pred EcCcCccceEEEEEeCCCCEEEEEEcC--------CeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC-
Q 001343 580 YAGFRKKSNGVVQFDTTQNHFLAVGED--------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD- 650 (1096)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d- 650 (1096)
-......... .+...++..++.||.+ ..+.+||..+++....-...........+. -++.+++.|+.+
T Consensus 422 ~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~ 498 (534)
T PHA03098 422 SPLPISHYGG-CAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKY 498 (534)
T ss_pred CCCCccccCc-eEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcC
Confidence 2111110111 1222345566666532 238889988776544322111111111222 266777777654
Q ss_pred ----CcEEEEEcCCC
Q 001343 651 ----NGFKILANAIG 661 (1096)
Q Consensus 651 ----g~i~iwd~~~~ 661 (1096)
+.+.+||..+.
T Consensus 499 ~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 499 EYYINEIEVYDDKTN 513 (534)
T ss_pred CcccceeEEEeCCCC
Confidence 35777777655
No 433
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.89 E-value=5.3 Score=38.59 Aligned_cols=184 Identities=13% Similarity=0.121 Sum_probs=97.9
Q ss_pred CCcEEEEec-C--CeEEEEEcccceEEEeecCCCCCee--EEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccc
Q 001343 842 NDSYVMSAT-G--GKISLFNMMTFKVMTTFMSPPPAST--FLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWE 916 (1096)
Q Consensus 842 dg~~la~~~-d--g~v~iwd~~~~~~~~~~~~h~~~i~--~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~ 916 (1096)
+|.++.+.+ - ..|++||+.+|+.+..-.-....+. .+.-. ...+..-.-.+|.-..+|..+-+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~---------- 122 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLE---------- 122 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhh----------
Confidence 556666665 2 4599999999988765432211221 11111 22233344467777888887765
Q ss_pred cccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccC-CC-CCCCceEEEEeeCCcEEEEE
Q 001343 917 KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQ-DA-LSAPISCAVYSCNSQLVFAT 993 (1096)
Q Consensus 917 ~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-~~-~~~~i~~l~~s~dg~~la~~ 993 (1096)
++..+.-.. .=.. ...|++.|+. ....+++.-|.++.....++.-. .+ --..+..+.| -||...|-.
T Consensus 123 -----~lg~~~y~G--eGWg--Lt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANV 192 (262)
T COG3823 123 -----ELGRFSYEG--EGWG--LTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANV 192 (262)
T ss_pred -----hhcccccCC--ccee--eecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEee
Confidence 222211111 1122 2344554554 34456666666655544333210 00 0122333444 378888888
Q ss_pred ecCCcEEEEecCCCceeEEEccccccCCC-ccCCCccccceEEEecCCCCceEEEE
Q 001343 994 FCDGNIGVFDADTLRLRCYIAPSTYLSPS-VLNGSQTVYPLVVAAHPLEPNQFAIG 1048 (1096)
Q Consensus 994 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~h~~~v~s~~l~~s~~d~~~l~s~ 1048 (1096)
-.+..|...+.++|++...+.....++.. +......|.- .|++.|+.+++++||
T Consensus 193 w~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlN-GIA~~~~~~r~~iTG 247 (262)
T COG3823 193 WQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLN-GIAHDPQQDRFLITG 247 (262)
T ss_pred eeecceEEEcCCCCcEEEEEEccCCchhcCcccccccccc-ceeecCcCCeEEEec
Confidence 88888999999999988777644432211 1112222433 699999444666665
No 434
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.45 E-value=15 Score=38.14 Aligned_cols=228 Identities=13% Similarity=0.100 Sum_probs=126.0
Q ss_pred CEEEEEEecCCCcEEEEEEeCCCcEEEEEcC-----Cc---eEEEeeC-----CCCCeEEEEeeecCC----------Cc
Q 001343 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWELS-----GR---KLFNFEG-----HEAPVYSICPHHKEN----------IQ 509 (1096)
Q Consensus 453 ~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~-----~~---~~~~~~~-----~~~~v~~~~~~~~~~----------~~ 509 (1096)
.-+.|+|+|.+. +-++...-+...+||.. +. .+.++.. .....+.+.|+...+ ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 458899999888 77777778899999933 21 1233321 223567777753211 12
Q ss_pred EEEEEECCCeEEEEEcCCCCe-----eeEEeCC-CC-cEEEEEEc--CCCCEEEEEeeccCCCCeEEEEeCCCCeee--E
Q 001343 510 FIFSTAIDGKIKAWLYDTMGS-----RVDYDAP-GH-WCTTMLYS--ADGSRLFSCGTSKDGDSFLVEWNESEGTIK--R 578 (1096)
Q Consensus 510 ~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~-~~-~i~~l~~s--~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~--~ 578 (1096)
.++.+++||+|.-|....... ...+... .. ....+++. ..+.+|..+.. ..++|.++|-.-.+.. .
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 367889999999997432222 1222211 22 33445554 33567766644 2778888875422211 0
Q ss_pred EEcCcC---c-cceEE--------EEE---eCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC----
Q 001343 579 TYAGFR---K-KSNGV--------VQF---DTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK---- 639 (1096)
Q Consensus 579 ~~~~~~---~-~~i~~--------~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---- 639 (1096)
.|.... + .+... +.| .+++..=+.|..-|.|-+||. .+..++.+.........+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 011000 0 01111 111 111112222334578999997 577787776665555678888766
Q ss_pred --CCCEEEEEECCCcEEEEEcCCCccccccccCCC-cccccCcceeEEeec
Q 001343 640 --EGNLLAVTTADNGFKILANAIGLRSLRAVENPP-FEALRTPIESVALKV 687 (1096)
Q Consensus 640 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~ 687 (1096)
.+.+|+----||+|..||..++ +.+-.+.... ..+.....+.+.|..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSG-AQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCC-ceeeeecCCCCCeEEecCeEEeeeCC
Confidence 4567777777999999999888 3333333322 222223344555543
No 435
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.10 E-value=0.3 Score=56.68 Aligned_cols=119 Identities=18% Similarity=0.278 Sum_probs=75.0
Q ss_pred CCEEEEEEcC---CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEE-----------ecCCCcEEEEEEe
Q 001343 407 ISVSRVAWSP---DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF-----------AYPNKLLCVVTCG 472 (1096)
Q Consensus 407 ~~V~~l~~sp---d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~-----------s~d~~~~~l~s~s 472 (1096)
..+.-|.|.| +.-++..+-.++.|++.++++... . .+.+|...+..++| +|||. .++.++
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~ 254 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAI 254 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEee
Confidence 3445556655 677888888889999988776433 1 24568877777664 78999 899999
Q ss_pred CCCcEEEEE--cCCc----eEEEeeCCCC-CeEEEEeeecCC-----C--cEEEEE-ECCCeEEEEEcCCCCee
Q 001343 473 DDKLIKVWE--LSGR----KLFNFEGHEA-PVYSICPHHKEN-----I--QFIFST-AIDGKIKAWLYDTMGSR 531 (1096)
Q Consensus 473 ~d~~i~iwd--~~~~----~~~~~~~~~~-~v~~~~~~~~~~-----~--~~l~s~-~~dg~i~iwd~~~~~~~ 531 (1096)
.||.++.|- ..|+ |+..++.|++ +-.|.-++.... + .+++++ ..+..+++|.-...++.
T Consensus 255 ~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 255 SDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 999998887 5554 4566677763 333322322110 1 123333 34556888866555544
No 436
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.03 E-value=5.9 Score=46.33 Aligned_cols=113 Identities=12% Similarity=0.098 Sum_probs=73.4
Q ss_pred cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEe--CCCCEEEEEEcCCeEEEEeCC--
Q 001343 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD--TTQNHFLAVGEDSQIKFWDMD-- 615 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~iwd~~-- 615 (1096)
.+.-+.-|.-++..++-.. ...+.|||.+.+.....-.-.....|..+.|. |+++.+++.|..+.|.+|.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~----~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSS----RSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY 106 (631)
T ss_pred CcceEeecccCcEEEEECC----CCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch
Confidence 3444445554554444332 67899999998876554433333477778775 688999999999999998642
Q ss_pred -------CCeEEEEeecCCCC-CCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 616 -------NVNILTSTDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 616 -------~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
+-..+..+...... .+|.+..|.++|.+++.++ +.+.|++-
T Consensus 107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 11234444332222 3789999999998776554 46788764
No 437
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.76 E-value=4.3 Score=43.79 Aligned_cols=166 Identities=13% Similarity=0.081 Sum_probs=92.8
Q ss_pred CcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCee-eeeecC
Q 001343 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVP-CIALSK 841 (1096)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~-~l~~s~ 841 (1096)
....+..+-..|||+.+..-+. .++.++++........ . +-+...|. ....|+ .+..-.
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r--k-------l~~dspg~----------~~~~Vte~l~lL~ 278 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR--K-------LVDDSPGD----------SRHQVTEQLYLLS 278 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh--h-------hhhcCCCc----------hHHHHHHHHHHHh
Confidence 4567788889999997776666 5888888865433111 0 11111111 011222 222223
Q ss_pred CCcEEEEec-CCeEEEE-Ecccc-----eEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccc
Q 001343 842 NDSYVMSAT-GGKISLF-NMMTF-----KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDT 914 (1096)
Q Consensus 842 dg~~la~~~-dg~v~iw-d~~~~-----~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~ 914 (1096)
.|.-+.+++ ||.|.-| |++.+ ..++.++-....+..+.--. +.+-+++-..+|++.++.-...+..
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~l------ 351 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLL------ 351 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcce------
Confidence 444444444 7776666 44322 22333333333444443333 5566777788888887754433300
Q ss_pred cccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEcccceecc
Q 001343 915 WEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIR 966 (1096)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~ 966 (1096)
..+... .....+++||.+.+|++-..+.++++.+++...-.
T Consensus 352 -------L~~~~~----~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~Pei 392 (733)
T COG4590 352 -------LFERAY----QAPQLVAMSPNQAYLLSEDQGKIRLAQLENRNPEI 392 (733)
T ss_pred -------ehhhhh----cCcceeeeCcccchheeecCCceEEEEecCCCCCc
Confidence 011111 15678999999999999888999999998665433
No 438
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.12 E-value=21 Score=41.81 Aligned_cols=198 Identities=12% Similarity=0.078 Sum_probs=101.4
Q ss_pred CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEe----eCCCCCeEEEEee
Q 001343 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF----EGHEAPVYSICPH 503 (1096)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~----~~~~~~v~~~~~~ 503 (1096)
-.|+|++..+ ..+.. +.-..+.+..+.|+.+.. |+....||++++|+..|..+... ......|..+.+.
T Consensus 64 ~~I~If~~sG-~lL~~---~~w~~~~lI~mgWs~~ee---LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f 136 (829)
T KOG2280|consen 64 PYIRIFNISG-QLLGR---ILWKHGELIGMGWSDDEE---LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFF 136 (829)
T ss_pred eeEEEEeccc-cchHH---HHhcCCCeeeecccCCce---EEEEeccceEEEeecchhhhcccccccccccCceeEEEEe
Confidence 4688888764 44443 222233889999998875 77788999999999777666542 2223334444433
Q ss_pred ecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC-CCC--cEEEEEEcCCCC---EEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGH--WCTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~--~i~~l~~s~~~~---~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
. +| ++.-..+|.+.+-+-........+.. +.. +..+-...+++. .++-... .. .-.+..-+..+.+..
T Consensus 137 ~--~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~-~v-~~~~~q~~~~~~q~~ 210 (829)
T KOG2280|consen 137 H--NG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV-AV-GLHICQVEESRVQLH 210 (829)
T ss_pred c--Cc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeech-hh-hhcccceeccccccc
Confidence 2 33 33444445554332111111111111 111 112222222221 1111100 00 000111111111111
Q ss_pred EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCC
Q 001343 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1096)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1096)
. +..... .+.-+..+|+.++|+--..+|.|.+-+.+..+....+....+. ....++|..+.
T Consensus 211 ~-~~~~~~-~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgnd 271 (829)
T KOG2280|consen 211 A-LSWPNS-SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGND 271 (829)
T ss_pred c-cCCCCc-eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecCC
Confidence 1 111112 5666889999999999999999999999888887777654432 23366665443
No 439
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.05 E-value=0.76 Score=31.80 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=26.7
Q ss_pred CceEEEEEcCCCC--cEEEEEeCCCeEEEEecCCC
Q 001343 345 STVISMDFHPSHQ--TLLLVGSSNGEITLWELAMR 377 (1096)
Q Consensus 345 ~~V~~v~fsp~g~--~llasg~~dg~I~iwd~~~~ 377 (1096)
++|.+++|||... -|||..-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4789999997543 47888878899999999853
No 440
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.99 E-value=13 Score=41.53 Aligned_cols=153 Identities=8% Similarity=-0.008 Sum_probs=0.0
Q ss_pred CCeeeeeecCCCcEEEEecCCeEEEEEcccceE-EEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccc-----
Q 001343 832 EAVPCIALSKNDSYVMSATGGKISLFNMMTFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD----- 905 (1096)
Q Consensus 832 ~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~-~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~----- 905 (1096)
+....+..++||.+++.+..|.+..=.-..... ...-......++++.|.+ ++.+++++ .+|.+..=+-...
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~~S~d~G~~~~~~ 316 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLYVSKGTGLTEEDF 316 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEEEecCCCCccccc
Q ss_pred eeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEee
Q 001343 906 ELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 985 (1096)
Q Consensus 906 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~ 985 (1096)
+ ............+..+.|.+++..++++..|.+... .+.|+.-.............+.+.|.+
T Consensus 317 ~---------------f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~ 380 (398)
T PLN00033 317 D---------------FEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFD 380 (398)
T ss_pred c---------------eeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcC
Q ss_pred CCcEEEEEecCCcEEEEe
Q 001343 986 NSQLVFATFCDGNIGVFD 1003 (1096)
Q Consensus 986 dg~~la~~~~dg~i~vwd 1003 (1096)
+++.++ .+.+|.|.-|.
T Consensus 381 ~~~g~~-~G~~G~il~~~ 397 (398)
T PLN00033 381 DKKGFV-LGNDGVLLRYL 397 (398)
T ss_pred CCceEE-EeCCcEEEEeC
No 441
>PHA02790 Kelch-like protein; Provisional
Probab=90.95 E-value=20 Score=41.74 Aligned_cols=185 Identities=7% Similarity=-0.017 Sum_probs=93.9
Q ss_pred CCCcEEEEec-C-----CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCC--eEEEEeeccceeeeeec
Q 001343 841 KNDSYVMSAT-G-----GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS--TIHIYNVRVDELCVWSI 912 (1096)
Q Consensus 841 ~dg~~la~~~-d-----g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg--~i~iw~~~~~~~~~w~~ 912 (1096)
.++.++++|+ + ..+..||..+.+....-.-+..........- ++++.++|+.++ ++..|+..+++ |.
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~-~~~iYviGG~~~~~sve~ydp~~n~---W~- 344 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA-NNKLYVVGGLPNPTSVERWFHGDAA---WV- 344 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE-CCEEEEECCcCCCCceEEEECCCCe---EE-
Confidence 3566667776 2 2477888877654332211111111112234 688888888643 46677765544 32
Q ss_pred cccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Eec---ceEEEEEcccceecc--ccccCCCCCCCceEEEEeeC
Q 001343 913 DTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHE---TQLAIYDASKMERIR--QWTPQDALSAPISCAVYSCN 986 (1096)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d---~~i~iwd~~~~~~~~--~~~~~~~~~~~i~~l~~s~d 986 (1096)
.+..+... ........-+|+..+. |.+ ..+..||..+.+-.. .+... .. ...+..-+
T Consensus 345 ---------~~~~l~~~---r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~---r~--~~~~~~~~ 407 (480)
T PHA02790 345 ---------NMPSLLKP---RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP---HY--KSCALVFG 407 (480)
T ss_pred ---------ECCCCCCC---CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc---cc--cceEEEEC
Confidence 11122211 1111223346666666 433 357788887654322 12111 11 11223457
Q ss_pred CcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeC-----CcEEEEccCC
Q 001343 987 SQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD-----GSVKVMEPSE 1061 (1096)
Q Consensus 987 g~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~d-----g~i~vW~v~~ 1061 (1096)
|++.+.|+ .+.+||.++.+-... .+ .+.. +.. . +++.. +++.+++||.+ ..|..||..+
T Consensus 408 ~~IYv~GG---~~e~ydp~~~~W~~~-~~---m~~~---r~~--~--~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 408 RRLFLVGR---NAEFYCESSNTWTLI-DD---PIYP---RDN--P--ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CEEEEECC---ceEEecCCCCcEeEc-CC---CCCC---ccc--c--EEEEE--CCEEEEECCcCCCcccceEEEEECCC
Confidence 77777774 578899887763322 11 1111 111 1 12322 68899998865 3588888876
Q ss_pred CC
Q 001343 1062 SE 1063 (1096)
Q Consensus 1062 ~~ 1063 (1096)
++
T Consensus 472 ~~ 473 (480)
T PHA02790 472 YS 473 (480)
T ss_pred Ce
Confidence 44
No 442
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.78 E-value=16 Score=43.34 Aligned_cols=115 Identities=8% Similarity=0.075 Sum_probs=75.3
Q ss_pred CEEEEEEcC--CCCEEEEEECCCeEEEEEccC-------C----------CccccceeecccccCEEEEEEe--cCCCcE
Q 001343 408 SVSRVAWSP--DGNYVGVAFTKHLIQLYSYAG-------S----------NDLRQHSQIDAHVGAVNDLAFA--YPNKLL 466 (1096)
Q Consensus 408 ~V~~l~~sp--d~~~l~s~~~dg~i~vwd~~~-------~----------~~~~~~~~l~~h~~~v~~l~~s--~d~~~~ 466 (1096)
.|+.|.... +...|+.|..||.|.+|.+++ . ..++....+. -...++++++. ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r-- 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR-- 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--
Confidence 466665544 566899999999999997631 0 0011122222 34578999998 6666
Q ss_pred EEEEEeCCCcEEEEE--cC-CceEE-EeeCCCCCeEEEEeeecCC---Cc-EEEEEECCCeEEEEEc
Q 001343 467 CVVTCGDDKLIKVWE--LS-GRKLF-NFEGHEAPVYSICPHHKEN---IQ-FIFSTAIDGKIKAWLY 525 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd--~~-~~~~~-~~~~~~~~v~~~~~~~~~~---~~-~l~s~~~dg~i~iwd~ 525 (1096)
+||.++....|.||- .. .+... .-..|...|.+|+|.+... |. .+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 788888888888886 21 22111 1112566788999977542 32 7888999999999887
No 443
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.76 E-value=10 Score=34.17 Aligned_cols=117 Identities=14% Similarity=0.211 Sum_probs=71.4
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeec---ccceeecccccCccccccccccCCCCEEEEEEcC-----CCC
Q 001343 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS---KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-----DGN 419 (1096)
Q Consensus 348 ~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----d~~ 419 (1096)
..-+|..... -|++++.-|+|.|++......... ..++ +-.-...|++|+-.+ +..
T Consensus 2 aiGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~---------------~LNin~~italaaG~l~~~~~~D 65 (136)
T PF14781_consen 2 AIGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDIS---------------FLNINQEITALAAGRLKPDDGRD 65 (136)
T ss_pred eEEEeCCCce-eEEEEecCCEEEEECCCccccccccccCcee---------------EEECCCceEEEEEEecCCCCCcC
Confidence 4455666666 488888999999999765432211 0111 112344677775544 345
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC---CCcEEEEEEeCCCcEEEEEcCCceE
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCGDDKLIKVWELSGRKL 487 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d---~~~~~l~s~s~d~~i~iwd~~~~~~ 487 (1096)
.|+.|+. ..+..||+.....+. .+.-.+.|+++.+-.- .. -++..+.+..|.-+|.+|+.+
T Consensus 66 ~LliGt~-t~llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~--~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 66 CLLIGTQ-TSLLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPS--PLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred EEEEecc-ceEEEEEcccCchhh----hhhCccceeEEEEEecCCCCC--cEEEECceEEEEEeCCCCcEE
Confidence 6777765 589999999876654 2334567888777321 12 244444477888888666544
No 444
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.62 E-value=6 Score=44.11 Aligned_cols=108 Identities=19% Similarity=0.206 Sum_probs=55.9
Q ss_pred CceEEEEEcCCCCcEEEEEe-----------CCC-eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEE
Q 001343 345 STVISMDFHPSHQTLLLVGS-----------SNG-EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~-----------~dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1096)
.....|+|.++|+ ++++-. ..+ .|.+++-.++.-... +..++...-.....+
T Consensus 14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d---------------~~~vfa~~l~~p~Gi 77 (367)
T TIGR02604 14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD---------------KSNVFAEELSMVTGL 77 (367)
T ss_pred CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc---------------eeEEeecCCCCccce
Confidence 3568899999999 555432 223 777776543321110 001122233456789
Q ss_pred EEcCCCCEEEEEECCCeEEEEEccCCC----ccccc-eeecc----cccCEEEEEEecCCCcEEEEEEe
Q 001343 413 AWSPDGNYVGVAFTKHLIQLYSYAGSN----DLRQH-SQIDA----HVGAVNDLAFAYPNKLLCVVTCG 472 (1096)
Q Consensus 413 ~~spd~~~l~s~~~dg~i~vwd~~~~~----~~~~~-~~l~~----h~~~v~~l~~s~d~~~~~l~s~s 472 (1096)
++.++| .++ +......++.|.+... ....+ ..+.. +......++|.|||. +.++-+
T Consensus 78 ~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~--LYv~~G 142 (367)
T TIGR02604 78 AVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW--LYFNHG 142 (367)
T ss_pred eEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC--EEEecc
Confidence 999998 444 4444333343543211 11111 11222 234578999999998 444433
No 445
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.35 E-value=7.7 Score=43.25 Aligned_cols=150 Identities=11% Similarity=0.045 Sum_probs=82.1
Q ss_pred CeeeeeecCCCcEEEEec------------C-CeEEEEEccc--ce--EEEeecCCCCCeeEEEEecCCCcEEEEeeCCC
Q 001343 833 AVPCIALSKNDSYVMSAT------------G-GKISLFNMMT--FK--VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1096)
Q Consensus 833 ~v~~l~~s~dg~~la~~~------------d-g~v~iwd~~~--~~--~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg 895 (1096)
....|+|.++|+++++-. . +.|.+++-.+ |+ ....+.........+++.+ ++ +++ +....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPPD 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCCe
Confidence 456799999999887742 2 3787776543 32 2234444445568899999 77 444 44443
Q ss_pred eEEEEeeccceeeeeeccccccccceeeecCCCC---CCCCCceEEEecCCcEEEE-Eec-------------------c
Q 001343 896 TIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGK---TPTGDTRVQFNADQVRMLV-VHE-------------------T 952 (1096)
Q Consensus 896 ~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~---~~~~v~~v~fs~dg~~l~~-~~d-------------------~ 952 (1096)
..++.+..... ..+. +....+..+... .......++|.|||.+.++ +.. +
T Consensus 92 i~~~~d~~gdg----~ad~---~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g 164 (367)
T TIGR02604 92 ILFLRDKDGDD----KADG---EREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGG 164 (367)
T ss_pred EEEEeCCCCCC----CCCC---ccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCc
Confidence 22333433211 0000 011122222221 0125778999999988777 521 3
Q ss_pred eEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecC
Q 001343 953 QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD 996 (1096)
Q Consensus 953 ~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~d 996 (1096)
.+.-++.++++. ..+..+ -.....++|+++|+++++-..+
T Consensus 165 ~i~r~~pdg~~~-e~~a~G---~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 165 GLFRYNPDGGKL-RVVAHG---FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred eEEEEecCCCeE-EEEecC---cCCCccceECCCCCEEEEccCC
Confidence 455555655443 222222 3445789999999988764433
No 446
>PHA02790 Kelch-like protein; Provisional
Probab=90.32 E-value=13 Score=43.10 Aligned_cols=148 Identities=11% Similarity=0.033 Sum_probs=69.9
Q ss_pred CCcEEEEEECCC--eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC
Q 001343 507 NIQFIFSTAIDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1096)
Q Consensus 507 ~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 584 (1096)
++.+.+.||.++ .+..||..+.+-...-..........+..-+|+..+.||.+. ....+..||..+.+-...-.-..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~-~~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSE-TDTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCC-CCccEEEEeCCCCEEEeCCCCCC
Confidence 456777777543 466777654322211111111111122223566666666422 23467788887765443211111
Q ss_pred ccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC-----CcEEEEEcC
Q 001343 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANA 659 (1096)
Q Consensus 585 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~ 659 (1096)
. .....+..-++...+.| |.+.+||..+++.............. +++ --++++.++||.+ ..+..||..
T Consensus 397 ~-r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 397 P-HYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred c-cccceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECC
Confidence 1 11111122344444555 35778998877655433222211112 222 2366778888754 346667765
Q ss_pred CC
Q 001343 660 IG 661 (1096)
Q Consensus 660 ~~ 661 (1096)
++
T Consensus 471 ~~ 472 (480)
T PHA02790 471 TY 472 (480)
T ss_pred CC
Confidence 54
No 447
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=89.61 E-value=49 Score=38.87 Aligned_cols=241 Identities=17% Similarity=0.197 Sum_probs=103.4
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCC--Cccccceeec---ccccCEEEEEEec-----CCCcEEEEEEeCCCc
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS--NDLRQHSQID---AHVGAVNDLAFAY-----PNKLLCVVTCGDDKL 476 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~l~---~h~~~v~~l~~s~-----d~~~~~l~s~s~d~~ 476 (1096)
..-..++.+|.|+.++.+..++.+.|+.++.. ........+. ...+.|.+++|.. +...+.++-....+.
T Consensus 44 ~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~ 123 (504)
T PF10433_consen 44 QPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRR 123 (504)
T ss_dssp TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-E
T ss_pred cCCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEeccc
Confidence 34567899999999999999999999998871 1111100111 1257789999986 222112222222222
Q ss_pred --EEE--EEcCCceEEEee----------CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC--C-eeeEEeCC--
Q 001343 477 --IKV--WELSGRKLFNFE----------GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM--G-SRVDYDAP-- 537 (1096)
Q Consensus 477 --i~i--wd~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~-~~~~~~~~-- 537 (1096)
+.. |+.......... .+..+ .-+...|.+.+- ++.++. +.+.+-+.... . ........
T Consensus 124 ~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p-~~LIPlp~~~gg-llV~~~-~~i~y~~~~~~~~~~~~~~~~~~~~ 200 (504)
T PF10433_consen 124 THLVTYEWSLDDGLNHVISKSTLPIRLPNEDELP-SFLIPLPNPPGG-LLVGGE-NIIIYKNHLIGSGDYSFLSIPSPPS 200 (504)
T ss_dssp EEEEEEE--------EETTTTEEEE--EEEE-TT-EEEEEE-TTT-S-EEEEES-SEEEEEE------TTEEEEE--H-H
T ss_pred ceeEEEeeecccccceeeeeccccccccccCCCc-cEEEEcCCCCcE-EEEECC-EEEEEecccccccccccccccCCcc
Confidence 222 441111111111 11222 222333343333 434433 33333322111 1 11122111
Q ss_pred --CCcEEEEE-------EcCCCCEEEEEeeccCCCCeEEEEeCCCCe--eeEEEcCcCccceEEEEEeCCC-CEEEEEEc
Q 001343 538 --GHWCTTML-------YSADGSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGE 605 (1096)
Q Consensus 538 --~~~i~~l~-------~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~ 605 (1096)
..-+.+.. ...++..++.+.. +|.++...+.... .....-+.......++++-.++ .+++.|+.
T Consensus 201 ~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e----~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~ 276 (504)
T PF10433_consen 201 SSSSLWTSWARPERNISYDKDGDRILLQDE----DGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSE 276 (504)
T ss_dssp HHTS-EEEEEE------SSTTSSEEEEEET----TSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEES
T ss_pred CCCceEEEEEeccccceecCCCCEEEEEeC----CCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEe
Confidence 22233333 3456667777765 8888877665433 1111111101134445555444 47777774
Q ss_pred --CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCC----CC------EEEEEE---CCCcEEEEE
Q 001343 606 --DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE----GN------LLAVTT---ADNGFKILA 657 (1096)
Q Consensus 606 --dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~------~l~~~~---~dg~i~iwd 657 (1096)
|+.+.-|....-+.+..+.. .++|.++++-+. .. .|++++ .+|.+++..
T Consensus 277 ~gds~l~~~~~~~l~~~~~~~N---~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr 340 (504)
T PF10433_consen 277 FGDSQLLQISLSNLEVLDSLPN---WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR 340 (504)
T ss_dssp SS-EEEEEEESESEEEEEEE-------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred cCCcEEEEEeCCCcEEEEeccC---cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence 55666666444445555543 347888887531 11 455554 467788764
No 448
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=89.59 E-value=50 Score=38.95 Aligned_cols=167 Identities=12% Similarity=0.084 Sum_probs=89.1
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEec-----CCCcEEEEEEe-CC--CcE
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-----PNKLLCVVTCG-DD--KLI 477 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~-----d~~~~~l~s~s-~d--~~i 477 (1096)
.+.|..+.|.++++.+++...+|.|.+||...+........-..+...+..=+|-+ ++..++++.+. .+ -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 56899999999999999999999999999943322111000112333222223333 23332333333 12 245
Q ss_pred EEEEc--CCceEEEee---CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC-----C-CcEEEEEE
Q 001343 478 KVWEL--SGRKLFNFE---GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-----G-HWCTTMLY 546 (1096)
Q Consensus 478 ~iwd~--~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~-~~i~~l~~ 546 (1096)
+++.. ++..+..+. .+........|... +|. |+-- .+++|.+|++...+........ . ..+.++..
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~-LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~ 285 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGK-LYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP 285 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEe-CCE-EEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence 55554 444444443 22222333334333 333 2222 6789999998776655443322 1 23445544
Q ss_pred cCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEc
Q 001343 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1096)
Q Consensus 547 s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1096)
-...+.|++. +..|++.|+.-...+.++.
T Consensus 286 ~s~nRvLLs~------~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 286 PSPNRVLLSV------NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCCCeEEEEc------CCEEEEEeehhhhhhhhhh
Confidence 3333444444 7799999987655555544
No 449
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.31 E-value=33 Score=36.55 Aligned_cols=283 Identities=10% Similarity=0.074 Sum_probs=126.7
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE
Q 001343 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1096)
Q Consensus 341 l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 420 (1096)
+.-...+..|+|..... -+|+| ..+. |+....|-.. |..... ..-..-.-...+|.|..+ .-
T Consensus 13 l~t~~~l~dV~F~d~~~-G~~VG-~~g~--il~T~DGG~t-------W~~~~~------~~~~~~~~~l~~I~f~~~-~g 74 (302)
T PF14870_consen 13 LPTDKPLLDVAFVDPNH-GWAVG-AYGT--ILKTTDGGKT-------WQPVSL------DLDNPFDYHLNSISFDGN-EG 74 (302)
T ss_dssp -S-SS-EEEEEESSSS--EEEEE-TTTE--EEEESSTTSS--------EE-----------S-----EEEEEEEETT-EE
T ss_pred cCCCCceEEEEEecCCE-EEEEe-cCCE--EEEECCCCcc-------cccccc------CCCccceeeEEEEEecCC-ce
Confidence 44456899999995555 56776 4454 3444443321 111000 000001224667787643 33
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceE-EEeeCCCCCeEE
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-FNFEGHEAPVYS 499 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~~~~v~~ 499 (1096)
+++ +..+ +.+...+.|+....+..-..-.+....+....++. .++ .+..|.|+.=...|+.= .....-.+.+..
T Consensus 75 ~iv-G~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~--~~l-~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~ 149 (302)
T PF14870_consen 75 WIV-GEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS--AEL-AGDRGAIYRTTDGGKTWQAVVSETSGSIND 149 (302)
T ss_dssp EEE-EETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTE--EEE-EETT--EEEESSTTSSEEEEE-S----EEE
T ss_pred EEE-cCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc--EEE-EcCCCcEEEeCCCCCCeeEcccCCcceeEe
Confidence 444 4444 44455555655443211011233445555555554 333 34456554433334322 223334456777
Q ss_pred EEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEe-CCCCeeeE
Q 001343 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN-ESEGTIKR 578 (1096)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd-~~~~~~~~ 578 (1096)
+.. .++|.+++++..-....-||--...-..........|.+|.|+|++...+.+ . .+.|+.=+ ....+.-.
T Consensus 150 ~~r--~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~----Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 150 ITR--SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-R----GGQIQFSDDPDDGETWS 222 (302)
T ss_dssp EEE---TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-T----TTEEEEEE-TTEEEEE-
T ss_pred EEE--CCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-C----CcEEEEccCCCCccccc
Confidence 665 4477777777665566677643222222333345689999999998876655 2 77777766 22222111
Q ss_pred E--EcC-cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeec-CCCCCCccEEEEeCCCCEEEEEECCCcEE
Q 001343 579 T--YAG-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-EGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1096)
Q Consensus 579 ~--~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1096)
. ... .....+..++|.+++...++| ..|.+ +...+.|+.-+.... ..-...++.+.|.++. .-.+.+.+|.|.
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~g-g~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~-~gf~lG~~G~ll 299 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAVG-GSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD-KGFVLGQDGVLL 299 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEEE-STT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETT-EEEEE-STTEEE
T ss_pred cccCCcccCceeeEEEEecCCCCEEEEe-CCccE-EEeCCCCccceECccccCCCCceEEEEEcCCC-ceEEECCCcEEE
Confidence 1 111 122246778998886666655 45554 455666766655543 2222357888987654 444555777776
Q ss_pred EE
Q 001343 655 IL 656 (1096)
Q Consensus 655 iw 656 (1096)
-|
T Consensus 300 ~~ 301 (302)
T PF14870_consen 300 RY 301 (302)
T ss_dssp EE
T ss_pred Ee
Confidence 55
No 450
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.99 E-value=23 Score=39.29 Aligned_cols=200 Identities=11% Similarity=0.086 Sum_probs=113.8
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE-cCCCCEEE-
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW-SPDGNYVG- 422 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-spd~~~l~- 422 (1096)
+.-..|.|-.+.. ++. .++.|-|+.......+. ..-.+.++.. ..|..-.+..+-. ..|..+|.
T Consensus 419 Ns~L~Vgfrn~rs-yVt---R~n~IGVFk~~de~~Le-F~aaiknvs~---------~~GKSidp~K~mlh~~dssli~~ 484 (776)
T COG5167 419 NSHLVVGFRNERS-YVT---RGNSIGVFKNTDEGSLE-FKAAIKNVSD---------DGGKSIDPEKIMLHDNDSSLIYL 484 (776)
T ss_pred CceEEEEEcccce-eEe---eCCeeeeEeccCCccee-hhhhhhhccC---------CCCCcCChhhceeecCCcceEEe
Confidence 3455666666554 232 57788888765443221 1111111111 1122222222222 33445544
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCc------EEEEEEeCCCcEEEEE--cCCceEEEeeC--
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL------LCVVTCGDDKLIKVWE--LSGRKLFNFEG-- 492 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~------~~l~s~s~d~~i~iwd--~~~~~~~~~~~-- 492 (1096)
.|+....++-.|++.|+.+. ++.-|... -+.|.|+.+. ..|+ |-.+..|.-.| ..|..+.....
T Consensus 485 dg~~~~kLykmDIErGkvve---eW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esKd 558 (776)
T COG5167 485 DGGERDKLYKMDIERGKVVE---EWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESKD 558 (776)
T ss_pred cCCCcccceeeecccceeee---EeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeehh
Confidence 34555677778888888776 45555554 5667664321 0344 44466666667 66755543321
Q ss_pred --CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEe
Q 001343 493 --HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1096)
Q Consensus 493 --~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd 570 (1096)
......+..- . ...++++++..|-|++||--.......+.+-+..|..+..+.+|+++++.+ ...+.+-|
T Consensus 559 Y~tKn~Fss~~t--T-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-----k~yllL~d 630 (776)
T COG5167 559 YKTKNKFSSGMT--T-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-----KNYLLLTD 630 (776)
T ss_pred cccccccccccc--c-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-----cceEEEEe
Confidence 1122233332 2 235999999999999998544444455666777899999999999988776 66777777
Q ss_pred CC
Q 001343 571 ES 572 (1096)
Q Consensus 571 ~~ 572 (1096)
+.
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 54
No 451
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=88.98 E-value=63 Score=41.96 Aligned_cols=148 Identities=12% Similarity=0.188 Sum_probs=83.2
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
|-..++.|.-+++|.+ +=. .|+.++.||..... |..- -..-...++.++-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~-lRl--Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQ-LRL--HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCe-EEe--ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceEe
Confidence 5556777777888874 332 67788888876543 2210 011233455566555666665
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cC--Cc----e--EEEeeCC
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS--GR----K--LFNFEGH 493 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~--~~----~--~~~~~~~ 493 (1096)
.++.. |-|+..+.... ..-..+.+...+++|.- .+.++.....+.+|+ .. +. + .-.+.+-
T Consensus 419 ---k~~~~-l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 ---KDDDT-LVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred ---cCCCc-eeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 22221 33554443221 12345777788899983 366666666779998 22 21 1 1222333
Q ss_pred CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC
Q 001343 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (1096)
.....+|.+++ ..|+++..+|.++.=++..
T Consensus 488 ~a~A~~VgLs~----drLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLSN----DRLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeecC----CeEEEEeCCCCEEeccccc
Confidence 33556666643 3688899999887766553
No 452
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.97 E-value=11 Score=36.66 Aligned_cols=147 Identities=11% Similarity=0.093 Sum_probs=81.2
Q ss_pred CCcEEEEEECCC--eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC
Q 001343 507 NIQFIFSTAIDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1096)
Q Consensus 507 ~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 584 (1096)
+|.++.+.+.-| .|++||+.+++...........+..=-...-|..+..-.. .++.-..+|..+.+++..+....
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~lg~~~y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEELGRFSYEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe---ccceeEEEChHHhhhhcccccCC
Confidence 456677766544 6999999988887766554322222222222333333322 27788889998888887776543
Q ss_pred ccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCC---CCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG---LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 585 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
. -..++ .++..++.+....++++-|.++.....++..... ...++.+.|- +|...|-.-.+..|...+..+|
T Consensus 132 e--GWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 132 E--GWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSG 206 (262)
T ss_pred c--ceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCC
Confidence 3 22233 3555677776667888888776554443332111 1233444543 4555544433444444444444
No 453
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=88.72 E-value=46 Score=37.35 Aligned_cols=144 Identities=7% Similarity=-0.025 Sum_probs=88.3
Q ss_pred CCcEEEEEECCCeEEEEEcCCCCee----eEEeCCCCcEEEEEEcC-----CCCEEEEEeeccCCCCeEEEEeCCC--Ce
Q 001343 507 NIQFIFSTAIDGKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSA-----DGSRLFSCGTSKDGDSFLVEWNESE--GT 575 (1096)
Q Consensus 507 ~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~l~~s~-----~~~~l~~~~~~~~~~~~i~iwd~~~--~~ 575 (1096)
+...|++|+..|.++||+....+.. ..-..-..+|..+..-+ +...|++-. ...+.+|.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLh-----P~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLH-----PRKLSVYSVSLVDGT 110 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEec-----CCEEEEEEEEecCCC
Confidence 3468999999999999987543311 11112234666665432 233455543 67788887621 11
Q ss_pred -------eeEEEcCcC-ccceEEEEEeCC-----CCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCC
Q 001343 576 -------IKRTYAGFR-KKSNGVVQFDTT-----QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1096)
Q Consensus 576 -------~~~~~~~~~-~~~i~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 642 (1096)
.+..+..|. ......+++.|- ..++.+-+.||.+.+|+-+.......+...- -.-.+.|.+...
T Consensus 111 ~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~l---lPgPl~Y~~~tD 187 (418)
T PF14727_consen 111 VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFL---LPGPLCYCPRTD 187 (418)
T ss_pred cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCC---CCcCeEEeecCC
Confidence 112222221 112333444432 2577888999999999987765555554422 345688999888
Q ss_pred EEEEEECCCcEEEEEc
Q 001343 643 LLAVTTADNGFKILAN 658 (1096)
Q Consensus 643 ~l~~~~~dg~i~iwd~ 658 (1096)
.+++++.+..+..|..
T Consensus 188 sfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 188 SFVTASSSWTLECYKY 203 (418)
T ss_pred EEEEecCceeEEEecH
Confidence 9999999988888875
No 454
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=88.63 E-value=50 Score=37.74 Aligned_cols=113 Identities=9% Similarity=0.045 Sum_probs=64.1
Q ss_pred CCEEEEEEcCC----CCEEEEEECCCeEEEEEccCC-----Cccccc-eeecccccC--EEEEEEecCCCcEEEEEEeCC
Q 001343 407 ISVSRVAWSPD----GNYVGVAFTKHLIQLYSYAGS-----NDLRQH-SQIDAHVGA--VNDLAFAYPNKLLCVVTCGDD 474 (1096)
Q Consensus 407 ~~V~~l~~spd----~~~l~s~~~dg~i~vwd~~~~-----~~~~~~-~~l~~h~~~--v~~l~~s~d~~~~~l~s~s~d 474 (1096)
.-|..+.|.|- --.|.+......|.||.+.-. +.+... .++ +..-+ -..+.|+|... .|+.-...
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi-~e~~pvLpQGCVWHPk~~--iL~VLT~~ 133 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEI-REPFPVLPQGCVWHPKKA--ILTVLTAR 133 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeec-cCCcccCCCcccccCCCc--eEEEEecC
Confidence 45999999994 323444556679999998621 211110 011 01111 24688999988 55554444
Q ss_pred CcEEEEE--cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEE-ECCCeEEEEE
Q 001343 475 KLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST-AIDGKIKAWL 524 (1096)
Q Consensus 475 ~~i~iwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd 524 (1096)
..-.+.+ .++..++.--...+.|.|.||.. ||+.|+++ +..=.-.+||
T Consensus 134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~--DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTK--DGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred ceeEeeeeeeCCceEEEeccCCceEEEEEecC--cCCEEEEEeCCeEEEEEec
Confidence 4444555 34444433334577899999976 56666554 3333456675
No 455
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.23 E-value=1.4 Score=30.51 Aligned_cols=33 Identities=21% Similarity=0.436 Sum_probs=27.4
Q ss_pred CCeeEEEEecCCC--cEEEEeeCCCeEEEEeeccc
Q 001343 873 PASTFLAFHPQDN--NIIAIGTEDSTIHIYNVRVD 905 (1096)
Q Consensus 873 ~~i~~l~~s~~d~--~~l~s~~~dg~i~iw~~~~~ 905 (1096)
+.+.++.|||+.+ .+|+.+-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999998444 68999989999999999853
No 456
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.02 E-value=3.3 Score=40.23 Aligned_cols=31 Identities=32% Similarity=0.564 Sum_probs=25.5
Q ss_pred CCEEEEEEcCCC------CEEEEEECCCeEEEEEccC
Q 001343 407 ISVSRVAWSPDG------NYVGVAFTKHLIQLYSYAG 437 (1096)
Q Consensus 407 ~~V~~l~~spd~------~~l~s~~~dg~i~vwd~~~ 437 (1096)
..|.+++|||-| -+||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 389999999943 4788889999999997654
No 457
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.67 E-value=52 Score=36.77 Aligned_cols=197 Identities=14% Similarity=0.046 Sum_probs=107.0
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC-Ce
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA-PV 497 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~-~v 497 (1096)
.+.++..+|.|.-.|.+++..+-..... +....+..-.+..+|+ |+.++.++.++..| .+|+.+........ .+
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 4444567788888888877644221111 1112233333333675 77788899899999 58999888776551 11
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC---CcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
..-.+ ..+ ..++.++.+|.+...|..++.......... ..+..-....++ .++.+..+ . ++.+.-.|..+|
T Consensus 146 ~~~~v--~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~-~-~~~~~a~~~~~G 219 (370)
T COG1520 146 ASPPV--VGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDG-Y-DGILYALNAEDG 219 (370)
T ss_pred ecCcE--EcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCC-C-cceEEEEEccCC
Confidence 11111 112 244555577888888888777776654432 111111112233 33333211 1 346777788888
Q ss_pred eeeEEEcCcCccceEE---EEEeC-----CCCEEEEEEcCCeEEEEeCCCCeEEEEeecC
Q 001343 575 TIKRTYAGFRKKSNGV---VQFDT-----TQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1096)
Q Consensus 575 ~~~~~~~~~~~~~i~~---~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1096)
................ ..... .+..++.++.++.+...+..+++.+......
T Consensus 220 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 220 TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 7766543221101000 00000 1123456677888999999999998888754
No 458
>PRK13684 Ycf48-like protein; Provisional
Probab=87.59 E-value=48 Score=36.30 Aligned_cols=278 Identities=10% Similarity=0.052 Sum_probs=131.6
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
...+.+|+|..... .+|+|. +|. ||...++-.. |...... +......+.++.|.++ ..+++
T Consensus 45 ~~~l~~v~F~d~~~-g~avG~-~G~--il~T~DgG~t-------W~~~~~~-------~~~~~~~l~~v~~~~~-~~~~~ 105 (334)
T PRK13684 45 EANLLDIAFTDPNH-GWLVGS-NRT--LLETNDGGET-------WEERSLD-------LPEENFRLISISFKGD-EGWIV 105 (334)
T ss_pred CCceEEEEEeCCCc-EEEEEC-CCE--EEEEcCCCCC-------ceECccC-------CcccccceeeeEEcCC-cEEEe
Confidence 45789999986655 577774 443 3444333211 1110000 1112234777888654 33443
Q ss_pred EECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEee-CCCCCeEEEEe
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICP 502 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~ 502 (1096)
+..+.|.. .-+.|+.......-....+....+....++. .+ .++..|.|..=+..|+.-..+. .-...+.++.+
T Consensus 106 -G~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~-~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~ 180 (334)
T PRK13684 106 -GQPSLLLH-TTDGGKNWTRIPLSEKLPGSPYLITALGPGT--AE-MATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRR 180 (334)
T ss_pred -CCCceEEE-ECCCCCCCeEccCCcCCCCCceEEEEECCCc--ce-eeeccceEEEECCCCCCceeCcCCCcceEEEEEE
Confidence 34444322 2333443332110001111222222222232 23 3344555443333343322221 22445777777
Q ss_pred eecCCCcEEEEEECCCeEEEEEcCCCCeee--EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEE
Q 001343 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1096)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1096)
.+ ++.+ +..+..|.+..- .+...... ........+.++.+.++++.++++. .+.+++=....|..-...
T Consensus 181 ~~--~g~~-v~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~d~G~sW~~~ 251 (334)
T PRK13684 181 SP--DGKY-VAVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDPDDLESWSKP 251 (334)
T ss_pred CC--CCeE-EEEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccCCCCCccccc
Confidence 55 4444 455556655421 12222211 2223345789999999998877764 555543223333321211
Q ss_pred cCc---CccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeec-CCCCCCccEEEEeCCCCEEEEEECCCcEEEE
Q 001343 581 AGF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-EGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1096)
Q Consensus 581 ~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1096)
..+ ....+..+.+.+++.. +.++.+|.+. ...+.++....... ..-....+.+.|..++..++ .+..|.|..|
T Consensus 252 ~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~ 328 (334)
T PRK13684 252 IIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRY 328 (334)
T ss_pred cCCccccccceeeEEEcCCCCE-EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEe
Confidence 111 1124666888887664 4555667665 45555555544432 11112467778776666554 5566777766
Q ss_pred E
Q 001343 657 A 657 (1096)
Q Consensus 657 d 657 (1096)
+
T Consensus 329 ~ 329 (334)
T PRK13684 329 V 329 (334)
T ss_pred c
Confidence 5
No 459
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=87.27 E-value=59 Score=36.99 Aligned_cols=314 Identities=13% Similarity=0.074 Sum_probs=151.0
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.-...|.++.|...|. +-+|+.|| +..||..+++.+.... ......|..+..+-.|+.
T Consensus 162 l~d~~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg~L- 219 (671)
T COG3292 162 LKDTPVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQGRL- 219 (671)
T ss_pred ccCccceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcCcE-
Confidence 3456899999999997 33455554 5667877777654200 001245666665555544
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEE-eeCCC--CCeE
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHE--APVY 498 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~~--~~v~ 498 (1096)
.+|+.+| |.+.+.++...... -..-..+.|..+.-..+|. +-.|+..|-.+.--........ .+-|. +.|.
T Consensus 220 WVGTdqG-v~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vn 293 (671)
T COG3292 220 WVGTDQG-VYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE---LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVN 293 (671)
T ss_pred EEEeccc-eEEEchhhcccccc--CCCCcchheeeeecccCCC---EEEeecccceeEecCCCCccccccccCCcccccc
Confidence 4465554 56666554211110 0011233344444333443 4445555543222222222111 12222 2334
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcC--CCCEEEEEeeccCCCCeEEEEeCCCCee
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~--~~~~l~~~~~~~~~~~~i~iwd~~~~~~ 576 (1096)
++.. +.+| -+-+++.+|.+++-+-+-..........+..+...+..| .+..+-.... .+.+.+-+-.+|..
T Consensus 294 sL~~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns----~g~L~van~stG~~ 366 (671)
T COG3292 294 SLWL--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNS----IGELMVANGSTGEL 366 (671)
T ss_pred ceee--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccc----cceEEEecCCCCcE
Confidence 4433 3344 466777777666543221111111111122222222222 1111111111 34455566667777
Q ss_pred eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC-CeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEE
Q 001343 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1096)
Q Consensus 577 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 655 (1096)
++....-.+..++..++.. +..+-.|+...-+-.|+..+ +.......+.. .+.|..+.=.|+++ |..|+.+|.++.
T Consensus 367 v~sv~q~Rg~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~agl~-ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 367 VRSVHQLRGMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLP-SSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred EEEeeeccccccchhhhcc-CCcEEEEecccchhhhccCCcccccccccCCc-ccceeeeeecCCCC-EEEeccCCeEec
Confidence 7776555555677777776 45566666665566677666 33333333322 33777888888888 778888887654
Q ss_pred EEcCCCccccccccCCCcccccCcceeEEeecCCCeEEec
Q 001343 656 LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1096)
Q Consensus 656 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~ 695 (1096)
+.+.+ +....+...........+..+.+.++|+.-++.
T Consensus 444 -~pe~~-~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~ 481 (671)
T COG3292 444 -DPESG-RVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAA 481 (671)
T ss_pred -Ccccc-chhcccccccCcCCcchhhhhccCCCCceEEEe
Confidence 33322 222222222222223335566777777665333
No 460
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.17 E-value=32 Score=38.15 Aligned_cols=153 Identities=8% Similarity=0.067 Sum_probs=90.9
Q ss_pred CEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecC------CCcEEEEEECCCeEEEEEc
Q 001343 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKE------NIQFIFSTAIDGKIKAWLY 525 (1096)
Q Consensus 453 ~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~l~s~~~dg~i~iwd~ 525 (1096)
.+..+....+...+++..|+....++-.| ..|+.+..+.-|... -+.+.|.. +.+.| +|-.+..|.-.|.
T Consensus 468 dp~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDP 544 (776)
T COG5167 468 DPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDP 544 (776)
T ss_pred ChhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecc
Confidence 34444444445544666677777888888 889999999877765 34444432 12334 4444444444455
Q ss_pred CCCCeeeEEeCCCC-----cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEE
Q 001343 526 DTMGSRVDYDAPGH-----WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1096)
Q Consensus 526 ~~~~~~~~~~~~~~-----~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 600 (1096)
+............. ...+..-. ...++++++. .|-|++||--.-+....+.+... .|..+..+.+|.++
T Consensus 545 R~~gNKi~v~esKdY~tKn~Fss~~tT-esGyIa~as~----kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~i 618 (776)
T COG5167 545 RARGNKIKVVESKDYKTKNKFSSGMTT-ESGYIAAASR----KGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHI 618 (776)
T ss_pred cccCCceeeeeehhccccccccccccc-cCceEEEecC----CCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEE
Confidence 54442222211111 22233322 3447888876 88999999654444445555555 77778899999998
Q ss_pred EEEEcCCeEEEEeCC
Q 001343 601 LAVGEDSQIKFWDMD 615 (1096)
Q Consensus 601 ~~~~~dg~i~iwd~~ 615 (1096)
++.+. ..+.+-|+.
T Consensus 619 laTCk-~yllL~d~~ 632 (776)
T COG5167 619 LATCK-NYLLLTDVP 632 (776)
T ss_pred EEeec-ceEEEEecc
Confidence 88775 366666654
No 461
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.53 E-value=45 Score=38.71 Aligned_cols=68 Identities=12% Similarity=0.144 Sum_probs=44.7
Q ss_pred cccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEE
Q 001343 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1096)
Q Consensus 450 h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 524 (1096)
....++++.-+|.+. -++.++.||+|++++ ...+.- .+-....|-..+.|.. .-|++...|..+.-|.
T Consensus 13 ~~e~~~aiqshp~~~--s~v~~~~d~si~lfn~~~r~qs-ki~~~~~p~~nlv~tn----hgl~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQ--SFVLAHQDGSIILFNFIPRRQS-KICEEAKPKENLVFTN----HGLVTATSDRRALAWK 81 (1636)
T ss_pred ccceeeeeeecCCCc--eEEEEecCCcEEEEeecccchh-hhhhhcCCccceeeec----cceEEEeccchhheee
Confidence 455677888889888 799999999999999 433321 1111223334455532 2377788888887784
No 462
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.30 E-value=14 Score=45.27 Aligned_cols=102 Identities=13% Similarity=0.088 Sum_probs=64.4
Q ss_pred CCeeeeeecCCC--cEEEEecCCeEEEEEcccceE-EEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceee
Q 001343 832 EAVPCIALSKND--SYVMSATGGKISLFNMMTFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELC 908 (1096)
Q Consensus 832 ~~v~~l~~s~dg--~~la~~~dg~v~iwd~~~~~~-~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~ 908 (1096)
.-..++.|.|.= ..++.-.|+.|++..+.-... ...+ .-....++++|+| .|+.+++|...|++.-|...--.
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~lei-- 231 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSLEI-- 231 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-CcccceeeEEecc-ccceeeEecCCCeEEEeecccce--
Confidence 344566776653 334444478888877633222 2222 3356789999999 99999999999999888654321
Q ss_pred eeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE
Q 001343 909 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 948 (1096)
Q Consensus 909 ~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~ 948 (1096)
.+.+..+.......|.+|.|-....++++
T Consensus 232 -----------k~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 232 -----------KSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred -----------eecccCCCcCCCcceeEEEEecceeEEEE
Confidence 00111121111137899999888888887
No 463
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.91 E-value=2.8 Score=45.11 Aligned_cols=162 Identities=11% Similarity=0.055 Sum_probs=93.1
Q ss_pred cCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEE-EeecCC-CC----Cee-EEEEecCCCcEEEEeeCCCeEEEE-e
Q 001343 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVM-TTFMSP-PP----AST-FLAFHPQDNNIIAIGTEDSTIHIY-N 901 (1096)
Q Consensus 830 ~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~-~~~~~h-~~----~i~-~l~~s~~d~~~l~s~~~dg~i~iw-~ 901 (1096)
....+..+-..|||+++..-+...+.|+++.+...- +.+... .+ .|+ ++.... ++.-|.++..||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 456788899999999999888888999988654331 122111 11 222 233344 68888999999999877 5
Q ss_pred eccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceE
Q 001343 902 VRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISC 980 (1096)
Q Consensus 902 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~ 980 (1096)
+..+. . .+-.-++.+.-.. .++.-+.--...+-+++ ...|++.++....-+.+-.-.. -..+..
T Consensus 298 vr~~~-------~---p~l~h~R~f~l~p-a~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~----~~~~~~ 362 (733)
T COG4590 298 VRRDG-------Q---PHLNHIRNFKLAP-AEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA----YQAPQL 362 (733)
T ss_pred eecCC-------C---CcceeeeccccCc-ccceeeccccccceEEEEcCCCceeeeecccCcceehhhh----hcCcce
Confidence 44332 0 0000111111100 12222222223344445 6677777766544333222111 346788
Q ss_pred EEEeeCCcEEEEEecCCcEEEEecCCCc
Q 001343 981 AVYSCNSQLVFATFCDGNIGVFDADTLR 1008 (1096)
Q Consensus 981 l~~s~dg~~la~~~~dg~i~vwd~~~~~ 1008 (1096)
+++||.+.++++ -..|.|+++.+++..
T Consensus 363 ~~~Sp~~~~Ll~-e~~gki~~~~l~Nr~ 389 (733)
T COG4590 363 VAMSPNQAYLLS-EDQGKIRLAQLENRN 389 (733)
T ss_pred eeeCcccchhee-ecCCceEEEEecCCC
Confidence 999999999984 455778988887643
No 464
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.88 E-value=7.3 Score=47.40 Aligned_cols=145 Identities=12% Similarity=0.006 Sum_probs=87.4
Q ss_pred CEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCce-----EEEeeCC------CCCeEEEEeeecCCCcEEEEEECCCeE
Q 001343 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK-----LFNFEGH------EAPVYSICPHHKENIQFIFSTAIDGKI 520 (1096)
Q Consensus 453 ~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~-----~~~~~~~------~~~v~~~~~~~~~~~~~l~s~~~dg~i 520 (1096)
+|..+...+|+....++..+.+-.|..+| .+-.. ..-|..| .....++.|+|... ...++...|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 55666667777643455555555788888 32211 1111111 22344666776543 345677889999
Q ss_pred EEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc---CccceEEEEEeCCC
Q 001343 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF---RKKSNGVVQFDTTQ 597 (1096)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---~~~~i~~~~~~~~~ 597 (1096)
++..+........--.-....++++|+|.|+.+++|-. .|.+.-|... ++....+.+. ....|.+++|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n----nGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN----NGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC----CCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 88866533332222223346899999999999999876 8888877643 3444444332 22367888888777
Q ss_pred CEEEEE
Q 001343 598 NHFLAV 603 (1096)
Q Consensus 598 ~~l~~~ 603 (1096)
.++++-
T Consensus 256 eflvvy 261 (1405)
T KOG3630|consen 256 EFLVVY 261 (1405)
T ss_pred eEEEEe
Confidence 776663
No 465
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.79 E-value=8.6 Score=47.81 Aligned_cols=166 Identities=14% Similarity=0.222 Sum_probs=93.4
Q ss_pred CcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEE
Q 001343 334 PRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1096)
Q Consensus 334 ~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1096)
|.+++..+.|...=+.+-+-|.=.+.-+| .|+.+.+|+++++..... +.+-...|..|.
T Consensus 68 P~el~eq~~~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~-------------------~d~~shtIl~V~ 126 (1311)
T KOG1900|consen 68 PDELLEQFSNIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAE-------------------YDGLSHTILKVG 126 (1311)
T ss_pred CHHHHHHhcCcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCcccc-------------------ccchhhhheeee
Confidence 33334334444444444455543334554 699999999998655432 344444555554
Q ss_pred E--------cCCCCEEEEEECCCeEEEEEccCCCccccc------eeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 414 W--------SPDGNYVGVAFTKHLIQLYSYAGSNDLRQH------SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 414 ~--------spd~~~l~s~~~dg~i~vwd~~~~~~~~~~------~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
. -|.=+++.+-+.--.|.++-+.-.+..... ..+....-.|+|+....+|+ .++ +|.||. +
T Consensus 127 LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~dg~--l 201 (1311)
T KOG1900|consen 127 LVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGRDGN--L 201 (1311)
T ss_pred eecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eecCCC--E
Confidence 3 223344444444456666654322211111 12333456788999888887 454 555664 4
Q ss_pred EE-----cCC---c-e----------------EEEee-CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC
Q 001343 480 WE-----LSG---R-K----------------LFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1096)
Q Consensus 480 wd-----~~~---~-~----------------~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (1096)
|. .+| + + +-.+. .+..+|..+.+.. ....+.+-+..|+|++||+..
T Consensus 202 yEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 202 YELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence 43 111 1 1 11123 5677899998854 346888999999999999875
No 466
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=85.75 E-value=1e+02 Score=38.29 Aligned_cols=170 Identities=16% Similarity=0.144 Sum_probs=105.9
Q ss_pred cCCCeeeeeec---C----CCcEEEEecCCeEEEEEc------cc---------ceEEEeecCC---CCCeeEEEEecCC
Q 001343 830 LEEAVPCIALS---K----NDSYVMSATGGKISLFNM------MT---------FKVMTTFMSP---PPASTFLAFHPQD 884 (1096)
Q Consensus 830 ~~~~v~~l~~s---~----dg~~la~~~dg~v~iwd~------~~---------~~~~~~~~~h---~~~i~~l~~s~~d 884 (1096)
...+|..++|+ . ..++|++-....+.|+.. .. ...+..+..+ ..+...++|.|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 46788888887 2 236888888888888872 11 1223333322 2356689999977
Q ss_pred CcEEEEeeCCCeEEEEeeccce---eeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEccc
Q 001343 885 NNIIAIGTEDSTIHIYNVRVDE---LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASK 961 (1096)
Q Consensus 885 ~~~l~s~~~dg~i~iw~~~~~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~ 961 (1096)
.+.+|+....|...||++.... ...|.+.... .+ .+ ..+....+....+.|.++-..|+++....+.++|+.+
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~--~g-si-~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~ 233 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNI--SG-SI-IFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFES 233 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcceeeccCC--Cc-cc-cCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCC
Confidence 8899999999999999993221 0111111000 00 01 0111111356688999999999998899999999998
Q ss_pred ceecc-ccccCCCCCCCceEEEEeeCC-cEEEEEecCCcEEEEecCC
Q 001343 962 MERIR-QWTPQDALSAPISCAVYSCNS-QLVFATFCDGNIGVFDADT 1006 (1096)
Q Consensus 962 ~~~~~-~~~~~~~~~~~i~~l~~s~dg-~~la~~~~dg~i~vwd~~~ 1006 (1096)
..... ...... ...|..+.-+++. .++++- ....|...++..
T Consensus 234 ~~~~~~l~~~~~--~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 234 NWQTEYLVTAKT--WSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred CCccchhccCCC--hhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 76533 222222 6778888888872 232222 335677777776
No 467
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.57 E-value=4.8 Score=40.75 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=51.5
Q ss_pred EcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccc-------cCCCCEEEEEEcCCCCEEEEE
Q 001343 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-------DVPISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 352 fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~spd~~~l~s~ 424 (1096)
+..++. +|.+-+.+|.+++||+.+++.+... +.+. .++. .....|..+.++.+|.-|++-
T Consensus 18 l~~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~-----------pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 18 LECNGS-YLLAITSSGLLYVWNLKKGKAVLPP-VSIA-----------PLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred EEeCCC-EEEEEeCCCeEEEEECCCCeeccCC-ccHH-----------HHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 445667 4666789999999999998876531 1111 1122 466789999999999888776
Q ss_pred ECCCeEEEEEccCC
Q 001343 425 FTKHLIQLYSYAGS 438 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~ 438 (1096)
+ +|....|+.+-+
T Consensus 85 s-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 85 S-NGDSYSYSPDLG 97 (219)
T ss_pred e-CCCEEEeccccc
Confidence 5 578888887653
No 468
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.94 E-value=13 Score=41.12 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=59.8
Q ss_pred CCCceEEEEeeCCcEEEEEecCCcEEEEe---------cCCCc--eeEEEcc---ccccCCCccCCCccccceEEEecCC
Q 001343 975 SAPISCAVYSCNSQLVFATFCDGNIGVFD---------ADTLR--LRCYIAP---STYLSPSVLNGSQTVYPLVVAAHPL 1040 (1096)
Q Consensus 975 ~~~i~~l~~s~dg~~la~~~~dg~i~vwd---------~~~~~--~~~~~~~---~~~~~~~~~~h~~~v~s~~l~~s~~ 1040 (1096)
.-.|..+..++.|..++-++.+|.+.++- +++|+ +.|+... .-|.... .-.+. .++|+|+
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~----~ltl~--Qa~WHP~ 176 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSST----SLTLK--QAAWHPS 176 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCC----ceeee--eccccCC
Confidence 45577788899999999999998655533 23454 4444321 1111111 12233 5789995
Q ss_pred C--CceEEEEeeCCcEEEEccCCCCCccccCCC
Q 001343 1041 E--PNQFAIGLTDGSVKVMEPSESEGKWGVSPP 1071 (1096)
Q Consensus 1041 d--~~~l~s~~~dg~i~vW~v~~~~~~~~~~~~ 1071 (1096)
. +..|+.-+.|+.|++|+.......|-.+.|
T Consensus 177 S~~D~hL~iL~sdnviRiy~lS~~telylqpge 209 (741)
T KOG4460|consen 177 SILDPHLVLLTSDNVIRIYSLSEPTELYLQPGE 209 (741)
T ss_pred ccCCceEEEEecCcEEEEEecCCcchhhccCCC
Confidence 3 567777889999999999998866666553
No 469
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=84.77 E-value=1.5 Score=51.31 Aligned_cols=148 Identities=15% Similarity=0.212 Sum_probs=80.8
Q ss_pred eecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEE-----------EecCCCcEEEEeeCCCeEEEEeeccc
Q 001343 838 ALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLA-----------FHPQDNNIIAIGTEDSTIHIYNVRVD 905 (1096)
Q Consensus 838 ~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~-----------~s~~d~~~l~s~~~dg~i~iw~~~~~ 905 (1096)
-|-++.-++..+. +|.|++.++.+.. ...+++|...++.++ .|| ||..++.++.||.++.|.+.-
T Consensus 190 p~~~~~~~ic~~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi- 266 (1283)
T KOG1916|consen 190 PIAVNKVYICYGLKGGEIRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYI- 266 (1283)
T ss_pred ccccccceeeeccCCCceeEeeechHH-HHHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeee-
Confidence 3445666777776 5777776664432 255667887777654 467 777777777777777776532
Q ss_pred eeeeeeccccccccceeeecCCCCCCCCCceEEEecCC---------cEEEEE--ecceEEEEEcccceeccccccCCCC
Q 001343 906 ELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ---------VRMLVV--HETQLAIYDASKMERIRQWTPQDAL 974 (1096)
Q Consensus 906 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg---------~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~ 974 (1096)
..+...+|+.....|....-.|.-|+... .+++++ ..+.+.+|.....+|+....
T Consensus 267 ---------~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~----- 332 (1283)
T KOG1916|consen 267 ---------TGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL----- 332 (1283)
T ss_pred ---------eccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc-----
Confidence 11222334444444432121222232221 133332 35679999988888873332
Q ss_pred CCCceEEEEeeCCcE------------EEEEecCCcEEEEe
Q 001343 975 SAPISCAVYSCNSQL------------VFATFCDGNIGVFD 1003 (1096)
Q Consensus 975 ~~~i~~l~~s~dg~~------------la~~~~dg~i~vwd 1003 (1096)
.+.|..|. -+||+. ++.-+-|+.|++|.
T Consensus 333 ~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~q 372 (1283)
T KOG1916|consen 333 IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQ 372 (1283)
T ss_pred ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhh
Confidence 33445454 334432 23345677788875
No 470
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=84.27 E-value=71 Score=35.16 Aligned_cols=198 Identities=10% Similarity=0.121 Sum_probs=98.7
Q ss_pred cEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecC---CCcE--EEEee-CC---CeEEEEeeccceeeeeecc
Q 001343 844 SYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQ---DNNI--IAIGT-ED---STIHIYNVRVDELCVWSID 913 (1096)
Q Consensus 844 ~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~---d~~~--l~s~~-~d---g~i~iw~~~~~~~~~w~~~ 913 (1096)
.+++... ++.+.+||+ .|+.+..+. .+..+.+..-.+ +++. |++++ .+ .+|++|.+......+-.+.
T Consensus 69 SlIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~ 145 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVT 145 (381)
T ss_dssp -EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-C
T ss_pred ceEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcC
Confidence 3444444 688999999 667777663 344454433210 3332 34443 32 4799998874320000000
Q ss_pred ccccccceeeecCCCCCCCCCceEEE--ec-CCcEEEE--EecceEEEEEcc---cc----eeccccccCCCCCCCceEE
Q 001343 914 TWEKRKSVTIHIPAGKTPTGDTRVQF--NA-DQVRMLV--VHETQLAIYDAS---KM----ERIRQWTPQDALSAPISCA 981 (1096)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~v~~v~f--s~-dg~~l~~--~~d~~i~iwd~~---~~----~~~~~~~~~~~~~~~i~~l 981 (1096)
.. ..++. .+ ...+..+++ ++ +|.+.+. ..+|.+.-|.+. .| +.++.+.. .+.+..+
T Consensus 146 ~~----~~p~~--~~--~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~----~sQ~EGC 213 (381)
T PF02333_consen 146 DP----AAPIA--TD--LSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV----GSQPEGC 213 (381)
T ss_dssp BT----TC-EE---S--SSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-----SS-EEEE
T ss_pred CC----Ccccc--cc--cccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC----CCcceEE
Confidence 00 00010 00 013455665 33 4654444 678888888774 22 45666654 5678889
Q ss_pred EEeeCCcEEEEEecCCcEEEEecCCCc--eeEEEccccccCCCccCCCccccceEEEecCCCC--ceEEEEeeCCcEEEE
Q 001343 982 VYSCNSQLVFATFCDGNIGVFDADTLR--LRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEP--NQFAIGLTDGSVKVM 1057 (1096)
Q Consensus 982 ~~s~dg~~la~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~--~~l~s~~~dg~i~vW 1057 (1096)
.......+|+.+-+|.-|.-|+.+... ....+.... ..+ ...-|--++|-..+ ++ -++++.-.+++..||
T Consensus 214 VVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~--g~~---l~aDvEGlaly~~~-~g~gYLivSsQG~~sf~Vy 287 (381)
T PF02333_consen 214 VVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD--GDG---LVADVEGLALYYGS-DGKGYLIVSSQGDNSFAVY 287 (381)
T ss_dssp EEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBS--SSS---B-S-EEEEEEEE-C-CC-EEEEEEEGGGTEEEEE
T ss_pred EEecccCCEEEecCccEEEEEecCCCCCCcceeeeccc--ccc---cccCccceEEEecC-CCCeEEEEEcCCCCeEEEE
Confidence 988888899999999888878776322 222221100 111 12234433344444 33 344444457789999
Q ss_pred ccCCC
Q 001343 1058 EPSES 1062 (1096)
Q Consensus 1058 ~v~~~ 1062 (1096)
+....
T Consensus 288 ~r~~~ 292 (381)
T PF02333_consen 288 DREGP 292 (381)
T ss_dssp ESSTT
T ss_pred ecCCC
Confidence 98764
No 471
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=84.18 E-value=3.8 Score=27.91 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=22.7
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCC--CeEEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSN--GEITLW 372 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~d--g~I~iw 372 (1096)
....-.+..|||||++++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 455678999999999877787777 776666
No 472
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=84.15 E-value=1.3e+02 Score=38.05 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=17.2
Q ss_pred CcccEEEEEEecCCceEEEeecC
Q 001343 763 TSSKVVRLLYTNSAVGLLALGSN 785 (1096)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~~d 785 (1096)
+-+.+.+++.+|||...++-..+
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCc
Confidence 55678899999999866655544
No 473
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=84.08 E-value=87 Score=40.76 Aligned_cols=377 Identities=12% Similarity=0.112 Sum_probs=176.8
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCcccccc
Q 001343 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRA 667 (1096)
Q Consensus 588 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 667 (1096)
++.+.-+++|..+=. .|+.+|.||........ . .......+..+.-.-||...+ -+.+ . +-|+..+.....
T Consensus 365 LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~~Wk~-~-~~~~d~~~S~Ls~qgdG~lYA-k~~~-~--l~nLSs~~~~~~- 435 (1774)
T PF11725_consen 365 LTGVHTDPDGEQLRL--HDDRLYQFDPNTARWKP-P-PDKSDTPFSSLSRQGDGKLYA-KDDD-T--LVNLSSGQMSEA- 435 (1774)
T ss_pred hhccccCCCCCeEEe--ecCceeeeccccceecC-C-CCcccchhhhhcccCCCceEe-cCCC-c--eeecCCCCcchh-
Confidence 444556666665543 46788888877653332 1 112223566666666777666 2222 1 234444421111
Q ss_pred ccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeee
Q 001343 668 VENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIV 747 (1096)
Q Consensus 668 ~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~ 747 (1096)
....+.+...+++|... +.++-....+.+|++....
T Consensus 436 --------~v~~l~sfSv~~~g~vA------------------------------------~L~~~d~q~~qL~~m~~~~ 471 (1774)
T PF11725_consen 436 --------EVDKLKSFSVAPDGTVA------------------------------------MLTGKDGQTLQLHDMSPVD 471 (1774)
T ss_pred --------hhhhcccccccCCCcee------------------------------------eeecCCCcceeeeccCccc
Confidence 11123344555555442 2233333556788877532
Q ss_pred c---CCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCcccccccc
Q 001343 748 D---SGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAND 824 (1096)
Q Consensus 748 ~---~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~ 824 (1096)
. +.....+.+.+ ......+|.++++ .|++...+|.++.=++.... ...+++ +......-+.....
T Consensus 472 a~~~p~~~~~L~L~d---G~a~A~~VgLs~d--rLFvADseGkLYsa~l~~~~-~~~~~l------~~~p~~~~~~~~~~ 539 (1774)
T PF11725_consen 472 APPTPRKTKTLQLAD---GKAQAQSVGLSND--RLFVADSEGKLYSADLPAAQ-DNEPKL------KLMPEPAYQLLGSA 539 (1774)
T ss_pred cccCccceeeeeccC---CchhhhheeecCC--eEEEEeCCCCEEeccccccc-CCCcce------Eecccccccccccc
Confidence 2 22224556665 4557888889887 48888888887665554322 111111 11111100001101
Q ss_pred ccCCCcCCCeeeeeecCCCcEEEEecC--CeEEE-------------EEcccceEEEeecCCC-----CCeeEEEEecCC
Q 001343 825 VAGVNLEEAVPCIALSKNDSYVMSATG--GKISL-------------FNMMTFKVMTTFMSPP-----PASTFLAFHPQD 884 (1096)
Q Consensus 825 ~~g~~~~~~v~~l~~s~dg~~la~~~d--g~v~i-------------wd~~~~~~~~~~~~h~-----~~i~~l~~s~~d 884 (1096)
+ | +...|+...-..+|++=|..-| |.+.. |++.+--.+..-.+-. .+-..+.+.. .
T Consensus 540 ~-G--~~~~VtGF~~gd~G~lhAlikd~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~~ldl~r-~ 615 (1774)
T PF11725_consen 540 L-G--GDHKVTGFISGDDGQLHALIKDRQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAPHEILDLGR-A 615 (1774)
T ss_pred c-c--ccceeeccccCCCCeeeEEEeccCCceeeccccccCCccCCCCcccceeEeeccCCCCCCCCCChHHhhcccc-c
Confidence 1 1 3444444422234444444432 33333 3332211111111111 1111233333 3
Q ss_pred CcEEEEeeCCCeEEEEeeccceeeeeecccc-ccccceeeecCCCCCC----CCCceEEEecCCcEEEEEecceEEEEEc
Q 001343 885 NNIIAIGTEDSTIHIYNVRVDELCVWSIDTW-EKRKSVTIHIPAGKTP----TGDTRVQFNADQVRMLVVHETQLAIYDA 959 (1096)
Q Consensus 885 ~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~-~~~~~~~~~~~~~~~~----~~v~~v~fs~dg~~l~~~~d~~i~iwd~ 959 (1096)
| .+|-.||.|.-||-.+.. |.-... .. .+..+-+++... +.|..+.+++.-.-++-+.+..+.+=..
T Consensus 616 G---~v~L~~G~i~~wD~ttq~---W~~~~~kd~--~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~ 687 (1774)
T PF11725_consen 616 G---LVGLQDGKIQYWDSTTQC---WKDAGVKDI--DQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQR 687 (1774)
T ss_pred c---ceeeccceEeeecCcchh---hhhccCcCH--HHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccc
Confidence 3 334457999999987654 421110 00 000011111111 4667777776666555544444432111
Q ss_pred ccceec-cccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEec
Q 001343 960 SKMERI-RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAH 1038 (1096)
Q Consensus 960 ~~~~~~-~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s 1038 (1096)
.+.-.+ ..+.+.. ...|.++++-.+.+|++ ....|.+.+.. ..+.... ...++ -...|.. |+..
T Consensus 688 r~~~e~G~~l~Gl~--~~~i~a~Avv~~~~fva-ld~qg~lt~h~-k~g~p~~------l~~~g---l~G~ik~--l~lD 752 (1774)
T PF11725_consen 688 RNKVELGDALEGLE--DRVITAFAVVNDNKFVA-LDDQGDLTAHQ-KPGRPVP------LSRPG---LSGEIKD--LALD 752 (1774)
T ss_pred cCCCCCCccccCCC--cCcceeEEEEcCCceEE-eccCCcccccc-CCCCCcc------CCCCC---CCcchhh--eeec
Confidence 111111 1122222 66788888876666655 77888888887 6665222 22223 3557884 7776
Q ss_pred CCCCceEEEEeeCCcEEEEc
Q 001343 1039 PLEPNQFAIGLTDGSVKVME 1058 (1096)
Q Consensus 1039 ~~d~~~l~s~~~dg~i~vW~ 1058 (1096)
. ..++++ ...+|.++.-+
T Consensus 753 ~-~~nL~A-lt~~G~Lf~~~ 770 (1774)
T PF11725_consen 753 E-KQNLYA-LTSTGELFRLP 770 (1774)
T ss_pred c-ccceeE-ecCCCceeecC
Confidence 5 555555 45678777543
No 474
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.34 E-value=77 Score=34.89 Aligned_cols=100 Identities=12% Similarity=0.151 Sum_probs=67.9
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcccc-ceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-
Q 001343 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQ-HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd- 481 (1096)
...++|.++.||+|.+.||+--.+.+|.+.+....+.... ..+.+..+..|....|+.... ++..+ +.-+-+|-
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e---~A~i~-~~G~e~y~v 139 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE---IAFIT-DQGIEFYQV 139 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee---EEEEe-cCCeEEEEE
Confidence 3567999999999999999999999999999854332211 112233445688999987643 44444 33455665
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCC
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKEN 507 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~ 507 (1096)
...+.++..+.|...|+-..|.+..+
T Consensus 140 ~pekrslRlVks~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 140 LPEKRSLRLVKSHNLNVNWYMYCPETA 166 (657)
T ss_pred chhhhhhhhhhhcccCccEEEEccccc
Confidence 44455666677888888777776543
No 475
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.24 E-value=25 Score=44.45 Aligned_cols=71 Identities=15% Similarity=0.264 Sum_probs=43.9
Q ss_pred CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC
Q 001343 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1096)
Q Consensus 538 ~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1096)
..++.+..+......+.... .+.+.+|+.........+..... ..+.++..++++..||.+.+||...+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 198 EYESLQVLYYSPTKILIGFN-----RGLVVIKDRASKYVQSAYLPNGQ------LESRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccccceeeeecCCCcceeee-----eeeeeehhcccccchhhcccccc------cCccCCceEEEEEecCCEEeeecCCC
Confidence 33455555554444444433 55666666544443333333222 11778899999999999999999987
Q ss_pred eE
Q 001343 618 NI 619 (1096)
Q Consensus 618 ~~ 619 (1096)
..
T Consensus 267 ~~ 268 (993)
T KOG1983|consen 267 KL 268 (993)
T ss_pred ce
Confidence 65
No 476
>smart00757 CRA CT11-RanBPM. protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)
Probab=83.12 E-value=3.8 Score=35.38 Aligned_cols=85 Identities=18% Similarity=0.117 Sum_probs=52.2
Q ss_pred CHHHHHHHHHhhcccccccCHH---HHHHHHHHhcccCccchhhhcccCCchHHHHHHHHHHHhhcccCccccccccCCC
Q 001343 89 DKAKAVDILVNDLKVFSTFNEE---LFKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPT 165 (1096)
Q Consensus 89 ~~~~A~~~l~~~l~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~~~~~~~~~ 165 (1096)
++.+|+++.|+++.++...++. .++++..++..+...+...+...- ....|+.+.+.+...+-... +.
T Consensus 2 ~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~~~sp~~~ll-~~~~~~~la~~~n~~~l~~~--------~~ 72 (99)
T smart00757 2 KIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELL-SPSQREKLAEELNSAILELL--------HG 72 (99)
T ss_pred cHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCCCCccHHHHC-CHHHHHHHHHHHHHHHHHHc--------cC
Confidence 5789999999999999776643 444444555554331111222111 34468888888877664311 00
Q ss_pred CC-chHHHHHHHHHHHHH
Q 001343 166 LK-SSRLRTLINQSLNWQ 182 (1096)
Q Consensus 166 ~p-~~rL~~Ll~qa~~~q 182 (1096)
.| ...|..++.+.+..+
T Consensus 73 ~~~~s~L~~~~~~~~~~~ 90 (99)
T smart00757 73 KSSESPLEILLSAGLAAL 90 (99)
T ss_pred CCCCChHHHHHHHHHHHH
Confidence 22 357999999887776
No 477
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=82.80 E-value=1 Score=48.99 Aligned_cols=125 Identities=17% Similarity=0.265 Sum_probs=86.6
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 338 ~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
.-.+.-+.....++|.-+|..+++.+-..+.+.+||+.+..... + ..-..|.... +.|++.
T Consensus 68 ~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq---L--------------E~gg~~s~sl--l~wsKg 128 (615)
T KOG2247|consen 68 ILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ---L--------------ESGGTSSKSL--LAWSKG 128 (615)
T ss_pred ecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH---H--------------hccCcchHHH--HhhccC
Confidence 33344455667778888888666677788999999997643210 0 0011233333 789999
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceE
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL 487 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~ 487 (1096)
+..++.+-..|.+.|++..+...+- ....|...++++++.+.+. .+.++.|..+.+-...|+..
T Consensus 129 ~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil~dcd~~L~v~~qegeta 192 (615)
T KOG2247|consen 129 TPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VILCDCDNTLSVTTQEGETA 192 (615)
T ss_pred CccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eeecCcHHHHHHhhhcccee
Confidence 9999999999999999988765443 3444999999999999885 67788787776655444433
No 478
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.69 E-value=6.2 Score=39.95 Aligned_cols=67 Identities=7% Similarity=0.103 Sum_probs=48.8
Q ss_pred EcCCCCEEEEEECCCeEEEEEccCCCccccce----eec-------ccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEc
Q 001343 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS----QID-------AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL 482 (1096)
Q Consensus 414 ~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~----~l~-------~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~ 482 (1096)
+..++.+|++.+.+|.+++||+.+++.+.... .+. .....|..+.++.+|. -|++-+ +|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~--PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV--PIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC--EEEEEe-CCCEEEecc
Confidence 44578899999999999999999887653321 122 3567788888888887 455554 578888884
Q ss_pred C
Q 001343 483 S 483 (1096)
Q Consensus 483 ~ 483 (1096)
+
T Consensus 95 ~ 95 (219)
T PF07569_consen 95 D 95 (219)
T ss_pred c
Confidence 3
No 479
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=82.66 E-value=79 Score=34.49 Aligned_cols=71 Identities=10% Similarity=-0.043 Sum_probs=34.0
Q ss_pred CCcEEEEEECC-----CeEEEEEcCCCCeeeEEeCCC-CcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 507 NIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 507 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
++.+.+.|+.. ..+..||+.+.+-...-.... ......+..-+++..+.++.+......+..||..+.+-.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 44566666642 356777776544322111111 112222233456666666542211124568888776543
No 480
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=82.64 E-value=61 Score=33.21 Aligned_cols=231 Identities=12% Similarity=0.029 Sum_probs=134.9
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCce
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~ 486 (1096)
.-..++-+|||..-.++...+.|--.|..+|+.... --+....-..+..-|||. .-++-+.. -|.-.| .+.+.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~y---pLg~Ga~Phgiv~gpdg~--~Witd~~~-aI~R~dpkt~ev 136 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETY---PLGSGASPHGIVVGPDGS--AWITDTGL-AIGRLDPKTLEV 136 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEE---ecCCCCCCceEEECCCCC--eeEecCcc-eeEEecCcccce
Confidence 445678889998888887777887778888765431 123444556677778877 33433222 344445 34332
Q ss_pred E-EEe--eCCCCCeEEEEeeecCCCcEEEEEEC---------CCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEE
Q 001343 487 L-FNF--EGHEAPVYSICPHHKENIQFIFSTAI---------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 487 ~-~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 554 (1096)
. ..+ +.-........|. +.|.+-+++.. .+.|++|+. ..+...+.|+..|||..-+
T Consensus 137 t~f~lp~~~a~~nlet~vfD--~~G~lWFt~q~G~yGrLdPa~~~i~vfpa----------PqG~gpyGi~atpdGsvwy 204 (353)
T COG4257 137 TRFPLPLEHADANLETAVFD--PWGNLWFTGQIGAYGRLDPARNVISVFPA----------PQGGGPYGICATPDGSVWY 204 (353)
T ss_pred EEeecccccCCCcccceeeC--CCccEEEeeccccceecCcccCceeeecc----------CCCCCCcceEECCCCcEEE
Confidence 2 111 2223345566664 35666666642 123344432 1234567889999999877
Q ss_pred EEeeccCCCCeEEEEeCCCCeeeEEEcCcC-ccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCcc
Q 001343 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1096)
+.-. ...|...|..++.....-.... ......+.-+|.+..-++....+.+..||..... .......+....-.
T Consensus 205 asla----gnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpy 279 (353)
T COG4257 205 ASLA----GNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPY 279 (353)
T ss_pred Eecc----ccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcc
Confidence 7554 6677777777663322211111 1123335566777777777778888888876655 44455554444667
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 634 RLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
++.....++...+--..|.|.-+|..+.
T Consensus 280 s~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 280 SMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred eeeeccCCcEEeeccccCceeecCcccc
Confidence 7777766666665555566666665543
No 481
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=82.48 E-value=7.1 Score=46.13 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=72.2
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccc-c-CccccccccccCCCCEEEEEEc--CCCCEEEEEECCCeEEEEE
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAA-C-SLPFQASIFKDVPISVSRVAWS--PDGNYVGVAFTKHLIQLYS 434 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~h~~~V~~l~~s--pd~~~l~s~~~dg~i~vwd 434 (1096)
+|+.+..||.|.+|.+++=....... .-+... . ....+..+...-..+++.++++ ...++||+++....|.||-
T Consensus 116 VLl~c~DdG~V~~Yyt~~I~~~i~~~--~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 116 VLLLCTDDGDVLAYYTETIIEAIERF--SEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred EEEEEecCCeEEEEEHHHHHHHHHhh--ccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence 78888999999999874311000000 000000 0 0000111222345689999999 8889999998888888886
Q ss_pred ccCCCccccceeecccccCEEEEEEecCCC--c--EEEEEEeCCCcEEEEE
Q 001343 435 YAGSNDLRQHSQIDAHVGAVNDLAFAYPNK--L--LCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 435 ~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~--~--~~l~s~s~d~~i~iwd 481 (1096)
......-.....-..|...|-+|+|.++.. . ..+++++-.|.+.+|+
T Consensus 194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 654211111101123667899999987651 1 3678888899998887
No 482
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=81.88 E-value=93 Score=34.81 Aligned_cols=40 Identities=10% Similarity=0.035 Sum_probs=18.6
Q ss_pred EEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC
Q 001343 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
+.+||..+.+....-..... .-...+..-++.+++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCCC
Confidence 45788776654322221111 11222333356677777653
No 483
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=81.57 E-value=17 Score=37.24 Aligned_cols=127 Identities=13% Similarity=0.089 Sum_probs=66.6
Q ss_pred CeeeeeecCCCcEEEEecC--C--eEEEEEccc----ceEEEee--cCCCCCeeEEEEecCCCcEEEEeeCCC-eEEEEe
Q 001343 833 AVPCIALSKNDSYVMSATG--G--KISLFNMMT----FKVMTTF--MSPPPASTFLAFHPQDNNIIAIGTEDS-TIHIYN 901 (1096)
Q Consensus 833 ~v~~l~~s~dg~~la~~~d--g--~v~iwd~~~----~~~~~~~--~~h~~~i~~l~~s~~d~~~l~s~~~dg-~i~iw~ 901 (1096)
...+-++-+||++|.+|++ | .+++++..+ ......- ......=-++...+ ||+.|+.|+.+. +..+|.
T Consensus 68 FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~-DG~vlIvGG~~~~t~E~~P 146 (243)
T PF07250_consen 68 FCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP-DGRVLIVGGSNNPTYEFWP 146 (243)
T ss_pred cccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC-CCCEEEEeCcCCCcccccC
Confidence 3344567799999999984 3 388888644 1111110 01112222455667 899999988874 234443
Q ss_pred eccceeeeeeccccccccceeeecCCCCC-CCCCceEEEecCCcEEEEEecceEEEEEcccceeccccc
Q 001343 902 VRVDELCVWSIDTWEKRKSVTIHIPAGKT-PTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWT 969 (1096)
Q Consensus 902 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~ 969 (1096)
-.....-.+. ...+....... ..---.+..-|||+.++.+..+ -.|||..+.+.++.+.
T Consensus 147 ~~~~~~~~~~--------~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~-s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 147 PKGPGPGPVT--------LPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG-SIIYDYKTNTVVRTLP 206 (243)
T ss_pred CccCCCCcee--------eecchhhhccCccccCceEEEcCCCCEEEEEcCC-cEEEeCCCCeEEeeCC
Confidence 3211100000 00111110000 0122356677999988886543 5567988887666654
No 484
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=81.46 E-value=59 Score=32.26 Aligned_cols=50 Identities=12% Similarity=0.359 Sum_probs=37.1
Q ss_pred CEEEEEEcCCeEEEEeCC--CCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC
Q 001343 598 NHFLAVGEDSQIKFWDMD--NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
..|+.+...+.|.+|++. ..+.+..+..- +.|..+.++..|++|++--.+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---GRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch---hheeEEEeccccceEEEEEee
Confidence 455555677889999988 34555555543 378999999999999987543
No 485
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=81.41 E-value=9.1 Score=33.38 Aligned_cols=80 Identities=21% Similarity=0.292 Sum_probs=53.8
Q ss_pred CcchHHHHHHHHHHHHHcChHHHHHHHHHhhCCCccHHHHHHHHhccCHHHHHHHHcCCCCCCCcccchhhHHHHHHHHH
Q 001343 2 SSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1096)
Q Consensus 2 ~~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~ 81 (1096)
..+.+|=...|.+|++..| +.+.+++|.|++.-.-+.| .|+.+..|........ .-...+...
T Consensus 32 ~~L~~E~~~Fi~~Fi~~rG---nlKe~e~~lgiSYPTvR~r-------Ld~ii~~lg~~~~~~~-------~~~~~~~~I 94 (113)
T PF09862_consen 32 ARLSPEQLEFIKLFIKNRG---NLKEMEKELGISYPTVRNR-------LDKIIEKLGYEEDEEE-------EEEDERKEI 94 (113)
T ss_pred hcCCHHHHHHHHHHHHhcC---CHHHHHHHHCCCcHHHHHH-------HHHHHHHhCCCCCccc-------ccchhHHHH
Confidence 4577888999999999999 9999999999998622111 1333344433111111 112347788
Q ss_pred HHhhccCC--HHHHHHHHH
Q 001343 82 LEALDRQD--KAKAVDILV 98 (1096)
Q Consensus 82 lell~~~~--~~~A~~~l~ 98 (1096)
|+.|+.|+ .++|++.|+
T Consensus 95 L~~L~~GeIs~eeA~~~Lk 113 (113)
T PF09862_consen 95 LDKLEKGEISVEEALEILK 113 (113)
T ss_pred HHHHHcCCCCHHHHHHHhC
Confidence 99999997 677887663
No 486
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=81.27 E-value=5.9 Score=27.35 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=27.6
Q ss_pred CCCcEEEEec--CCeEEEEEcccceEEEeecCCCCCeeEEEE
Q 001343 841 KNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAF 880 (1096)
Q Consensus 841 ~dg~~la~~~--dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~ 880 (1096)
|++++|.++. ++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5777777766 588999999999888877652 33334444
No 487
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=80.63 E-value=63 Score=32.07 Aligned_cols=163 Identities=12% Similarity=0.113 Sum_probs=89.3
Q ss_pred CeeeeeecCCCcEEEEecCCeEEEEEcc--cceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCC------eEEEE---e
Q 001343 833 AVPCIALSKNDSYVMSATGGKISLFNMM--TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS------TIHIY---N 901 (1096)
Q Consensus 833 ~v~~l~~s~dg~~la~~~dg~v~iwd~~--~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg------~i~iw---~ 901 (1096)
....++-++.+.++++++..+|.+|++. ..+.+.+|.. -+.|..++++. .|++|+|--.+. .+|+| +
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence 3445555554556555667889999987 3445666643 37899999999 899999864332 45665 2
Q ss_pred eccce---eeeeecc----ccc----cccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEccccee-ccc--
Q 001343 902 VRVDE---LCVWSID----TWE----KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMER-IRQ-- 967 (1096)
Q Consensus 902 ~~~~~---~~~w~~~----~~~----~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~-~~~-- 967 (1096)
..... +++.-.. ... ...-..+..+-. ....+++--|-.--|+++.++.+.+|.+..... ...
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~---~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~ 173 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLS---EPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFS 173 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCC---CCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEeccccc
Confidence 22111 2221111 000 000011122221 256777777766677778889999999875443 111
Q ss_pred -------cccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEec
Q 001343 968 -------WTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1004 (1096)
Q Consensus 968 -------~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~ 1004 (1096)
+..++ ..-.+..++| .+.|+|..+ +..++|+.+
T Consensus 174 ~lDFe~~l~~~~-~~~~p~~v~i--c~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 174 FLDFERSLIDHI-DNFKPTQVAI--CEGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred EEechhhhhhee-cCceEEEEEE--EeeEEEEec-CCEEEEEEE
Confidence 11111 0222334444 466888555 446776654
No 488
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=79.40 E-value=83 Score=32.67 Aligned_cols=163 Identities=12% Similarity=0.076 Sum_probs=92.2
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE
Q 001343 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1096)
Q Consensus 341 l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 420 (1096)
+.-.+-+..+.|+.+ ++..+..+.-++|.|+.+....... ..+. -.+--.++.. .|++
T Consensus 83 i~~~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~----------------~~ln-t~gyaygv~v--sGn~ 140 (370)
T COG5276 83 INARDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLI----------------GFLN-TDGYAYGVYV--SGNY 140 (370)
T ss_pred EehhhhhheeEeccc---EEEEEcCCCceEEEeccCCCCccee----------------cccc-CCceEEEEEe--cCCE
Confidence 345667888888866 4555567778999998876543210 0011 1123344444 4888
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCC---CCCe
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH---EAPV 497 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~---~~~v 497 (1096)
..++..|.-..+.|+.+.+.......+....+.-..++.| |+ +-..+..|+-+.+-|.+...--.|.+| ...+
T Consensus 141 aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn--~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~ 216 (370)
T COG5276 141 AYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GN--YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGT 216 (370)
T ss_pred EEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cC--eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCce
Confidence 8888766666788888765443222344445555677776 44 555666788899999332222222222 2256
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeE
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD 533 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 533 (1096)
.++..++ + +....-.+.-+.+-|....+....
T Consensus 217 ~sv~vsd--n--r~y~vvy~egvlivd~s~~ssp~~ 248 (370)
T COG5276 217 YSVSVSD--N--RAYLVVYDEGVLIVDVSGPSSPTV 248 (370)
T ss_pred EEEEecC--C--eeEEEEcccceEEEecCCCCCceE
Confidence 7776543 3 233333334455666666554443
No 489
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=78.49 E-value=1.1e+02 Score=33.46 Aligned_cols=178 Identities=15% Similarity=0.112 Sum_probs=94.2
Q ss_pred cccEEEEEEecCCceEEEeecCCe------EEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeee
Q 001343 764 SSKVVRLLYTNSAVGLLALGSNGV------QKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837 (1096)
Q Consensus 764 ~~~i~~l~~s~~~~~l~~~~~dg~------v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l 837 (1096)
-+.+..+.+.+++..+++.+.+|. +..+++..... ..+.......+.+-+ ..|..+. . ..-...++
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~-~~G~~~~----~--~~~D~Egi 90 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRD-PDGQPFP----K--NGLDPEGI 90 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccC-CCCCcCC----c--CCCChhHe
Confidence 346788999966666777777766 55555443111 111111111111111 1122211 1 12256678
Q ss_pred eecCCCcEEEEec-C------CeEEEEEcccceEEEeec---------------CCCCCeeEEEEecCCCcEEEEeeC--
Q 001343 838 ALSKNDSYVMSAT-G------GKISLFNMMTFKVMTTFM---------------SPPPASTFLAFHPQDNNIIAIGTE-- 893 (1096)
Q Consensus 838 ~~s~dg~~la~~~-d------g~v~iwd~~~~~~~~~~~---------------~h~~~i~~l~~s~~d~~~l~s~~~-- 893 (1096)
++.++|.++++.. + ..|..++.. |+.+..+. ..+...-+|+++| |++.|+++..
T Consensus 91 ~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~~ 168 (326)
T PF13449_consen 91 AVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMESP 168 (326)
T ss_pred EEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECcc
Confidence 8888888877766 4 458888865 76655542 1234566899999 8886666543
Q ss_pred ---CC---------eEEEEeeccceeeeeeccccccccceeeecCCC-----CCCCCCceEEEecCCcEEEE--E----e
Q 001343 894 ---DS---------TIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAG-----KTPTGDTRVQFNADQVRMLV--V----H 950 (1096)
Q Consensus 894 ---dg---------~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~-----~~~~~v~~v~fs~dg~~l~~--~----~ 950 (1096)
|+ .++|+........ .......-.++. .. ..+..+.+-+++++|+. + .
T Consensus 169 l~~d~~~~~~~~~~~~ri~~~d~~~~~--------~~~~~~~y~ld~~~~~~~~-~~isd~~al~d~~lLvLER~~~~~~ 239 (326)
T PF13449_consen 169 LKQDGPRANPDNGSPLRILRYDPKTPG--------EPVAEYAYPLDPPPTAPGD-NGISDIAALPDGRLLVLERDFSPGT 239 (326)
T ss_pred ccCCCcccccccCceEEEEEecCCCCC--------ccceEEEEeCCccccccCC-CCceeEEEECCCcEEEEEccCCCCc
Confidence 22 1455544432100 000111112221 22 27899999999998887 3 2
Q ss_pred cceEEEEEcc
Q 001343 951 ETQLAIYDAS 960 (1096)
Q Consensus 951 d~~i~iwd~~ 960 (1096)
...++||.+.
T Consensus 240 ~~~~ri~~v~ 249 (326)
T PF13449_consen 240 GNYKRIYRVD 249 (326)
T ss_pred cceEEEEEEE
Confidence 3455665553
No 490
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=78.42 E-value=38 Score=35.68 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=53.9
Q ss_pred CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe------CCCcEEEEEcCCceEEEeeC-----CCCC
Q 001343 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG------DDKLIKVWELSGRKLFNFEG-----HEAP 496 (1096)
Q Consensus 428 g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s------~d~~i~iwd~~~~~~~~~~~-----~~~~ 496 (1096)
..|++||..+.+-... -.+-.+.|+++.|..+.+ +++.|. ....+..||.+......+.+ -.++
T Consensus 16 ~~lC~yd~~~~qW~~~---g~~i~G~V~~l~~~~~~~--Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgp 90 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSP---GNGISGTVTDLQWASNNQ--LLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGP 90 (281)
T ss_pred CEEEEEECCCCEeecC---CCCceEEEEEEEEecCCE--EEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCc
Confidence 4699999888654432 234678899999996665 677664 45678889955555545544 2477
Q ss_pred eEEEEeeecCCCcEEEEEE
Q 001343 497 VYSICPHHKENIQFIFSTA 515 (1096)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~ 515 (1096)
|..+.+......++.+.|.
T Consensus 91 v~a~~~~~~d~~~~~~aG~ 109 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGR 109 (281)
T ss_pred EEEEEeeccCCceEEEece
Confidence 8888775443334554544
No 491
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=78.40 E-value=65 Score=34.00 Aligned_cols=120 Identities=9% Similarity=0.083 Sum_probs=67.2
Q ss_pred CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE------CCCeEEEEEccCCCc
Q 001343 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF------TKHLIQLYSYAGSND 440 (1096)
Q Consensus 367 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~------~dg~i~vwd~~~~~~ 440 (1096)
..|.+||+.+.+-.. .-.+-.+.|+++.|..+.+.++.|. ....+..||.++..-
T Consensus 16 ~~lC~yd~~~~qW~~-------------------~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS-------------------PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CEEEEEECCCCEeec-------------------CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 468999988765432 1233467899999997777777764 345688899887543
Q ss_pred cccceee-cccccCEEEEEEecCCCcEEEEEEe-CCC--cEEEEE-cCCceEEE-eeCCCCCeEEEEeeec
Q 001343 441 LRQHSQI-DAHVGAVNDLAFAYPNKLLCVVTCG-DDK--LIKVWE-LSGRKLFN-FEGHEAPVYSICPHHK 505 (1096)
Q Consensus 441 ~~~~~~l-~~h~~~v~~l~~s~d~~~~~l~s~s-~d~--~i~iwd-~~~~~~~~-~~~~~~~v~~~~~~~~ 505 (1096)
....... ..-.++|..+.+..++...+.+.|. .++ .|..|| .+-..+.. ..+....|..+.+.+.
T Consensus 77 ~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 77 SSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred eecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEec
Confidence 2110001 1235788888885433321444443 333 466666 43333333 2223445666655443
No 492
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=77.38 E-value=94 Score=35.35 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=39.7
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccc-cCCCCEEEEEEcCCC
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWSPDG 418 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spd~ 418 (1096)
.-...+.|+|.|||+ +|++--..|.|++++-.++.......+ .. +.. ...+....|+++|+-
T Consensus 28 GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~-v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PE-IVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------Cc-eeccCCCCceeeEEECCCc
Confidence 445679999999998 677654469999998665432111000 00 111 136789999999874
No 493
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=76.49 E-value=72 Score=37.70 Aligned_cols=59 Identities=14% Similarity=0.277 Sum_probs=38.7
Q ss_pred CCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEE
Q 001343 831 EEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889 (1096)
Q Consensus 831 ~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~ 889 (1096)
...+..++|.-....+|.+..+.|++|-..+....-...-.-..+.-+.|+|...+.|.
T Consensus 295 dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~ 353 (1243)
T COG5290 295 DEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLL 353 (1243)
T ss_pred hhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEE
Confidence 34456677777777777777889999998776654443334456677888884333333
No 494
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=75.62 E-value=98 Score=36.18 Aligned_cols=77 Identities=18% Similarity=0.272 Sum_probs=54.5
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCc
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 485 (1096)
...++++.-+|.|.-++.+..||+|++|+.......+ +-....+-..+.|...| |++...|..+.-|..+|-
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk----i~~~~~p~~nlv~tnhg----l~~~tsdrr~la~~~dgv 85 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK----ICEEAKPKENLVFTNHG----LVTATSDRRALAWKEDGV 85 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhh----hhhhcCCccceeeeccc----eEEEeccchhheeeccCc
Confidence 4467888888999999999999999999987644322 22233445566676544 677777888888987775
Q ss_pred eEEEe
Q 001343 486 KLFNF 490 (1096)
Q Consensus 486 ~~~~~ 490 (1096)
..+.|
T Consensus 86 vqqqf 90 (1636)
T KOG3616|consen 86 VQQQF 90 (1636)
T ss_pred chhhc
Confidence 54444
No 495
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=75.17 E-value=65 Score=29.25 Aligned_cols=112 Identities=9% Similarity=0.029 Sum_probs=61.9
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEccCCCccc-----cceeecccccCEEEEEEec---CCCcEEEEEEeCCCcEEEEE-c
Q 001343 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR-----QHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIKVWE-L 482 (1096)
Q Consensus 412 l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~-----~~~~l~~h~~~v~~l~~s~---d~~~~~l~s~s~d~~i~iwd-~ 482 (1096)
-.|......|+.++.-|.|.|++........ .+ .+-.-...|++++--+ +..+-.|+.|+ ..++..|| .
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i-~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDI-SFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCce-eEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 3455555678888888999999876432111 11 1222455677776443 32222666666 66889999 4
Q ss_pred CCceEEEeeCCCCCeEEEEeeecCC-CcEEEEEECCCeEEEEEcC
Q 001343 483 SGRKLFNFEGHEAPVYSICPHHKEN-IQFIFSTAIDGKIKAWLYD 526 (1096)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~ 526 (1096)
+...+ -++.-...|+++.+-.-++ ..-++..+.+..|.-||.+
T Consensus 82 ~N~d~-Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 82 NNSDL-FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred cCchh-hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence 44433 3344456788877643222 1224444445556555544
No 496
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=75.14 E-value=4.7 Score=32.72 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcChHHHHHHHHHhhCCCcc
Q 001343 7 ELVFLILQFLEEEKFKESVHKLEKESGFFFN 37 (1096)
Q Consensus 7 e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~ 37 (1096)
=++-||..||.=.||+-|+.+|+.|||..-.
T Consensus 20 Li~eLIrEyLef~~l~~TlsVf~~Es~~~~~ 50 (81)
T PF09398_consen 20 LINELIREYLEFNNLDYTLSVFQPESGQPEE 50 (81)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHT-TT-
T ss_pred HHHHHHHHHHHHcCCccHHHHHhhccCCCCC
Confidence 3578999999999999999999999998744
No 497
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.04 E-value=60 Score=36.38 Aligned_cols=38 Identities=11% Similarity=0.222 Sum_probs=28.3
Q ss_pred eEEEEEeCCC---CEEEEEEcCCeEEEEeCCCCeEEEEeec
Q 001343 588 NGVVQFDTTQ---NHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 588 i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1096)
+..++|+|+. .++..-+.|..|++||......+....+
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred eeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCC
Confidence 4447788864 6788888999999999987666644433
No 498
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=74.11 E-value=1.4e+02 Score=32.55 Aligned_cols=112 Identities=7% Similarity=-0.062 Sum_probs=52.5
Q ss_pred CcEEEEEECCC-----eEEEEEcCCCCee---eEEeCCCCcE--EEEEEcCCCCEEEEEeec-cCCCCeEEEEeCCCCee
Q 001343 508 IQFIFSTAIDG-----KIKAWLYDTMGSR---VDYDAPGHWC--TTMLYSADGSRLFSCGTS-KDGDSFLVEWNESEGTI 576 (1096)
Q Consensus 508 ~~~l~s~~~dg-----~i~iwd~~~~~~~---~~~~~~~~~i--~~l~~s~~~~~l~~~~~~-~~~~~~i~iwd~~~~~~ 576 (1096)
+.+++.|+.++ .+..+|+.+..-. .....-..+. .+++. -+++..+.++.. ......+..||+.+.+-
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 35666776543 4556676655431 1111111111 12222 245555555531 11235688899877654
Q ss_pred eEEEcCcCccceEEEEEeCCCCEEEEEEcCC----eEEEEeCCCCeEE
Q 001343 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS----QIKFWDMDNVNIL 620 (1096)
Q Consensus 577 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~ 620 (1096)
...-...........+...++..++.|+.++ .+.+||..+.+..
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 3321111111111222233566677777553 3568888876543
No 499
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=74.09 E-value=2e+02 Score=34.34 Aligned_cols=96 Identities=11% Similarity=0.234 Sum_probs=50.5
Q ss_pred EEEEEcCCCCEEEEEeeccCC-CCeEEEEeCCCCeeeEEE--cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe
Q 001343 542 TTMLYSADGSRLFSCGTSKDG-DSFLVEWNESEGTIKRTY--AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 542 ~~l~~s~~~~~l~~~~~~~~~-~~~i~iwd~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1096)
..+.|-|.|..+++.+.+... ...+..+.. +|-....+ ....+......+|+-....++. ...+.+.+|-..+..
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vlav-~~~n~~~lwttkNyh 327 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVLAV-AEGNLLKLWTTKNYH 327 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHHHH-hhcceEEEEEccceE
Confidence 348899999999987753221 223444432 22111111 1111113344556544333333 345689999887765
Q ss_pred EEEEeecCCCCCCccEEEEeCCC
Q 001343 619 ILTSTDAEGGLPNLPRLRFSKEG 641 (1096)
Q Consensus 619 ~~~~~~~~~~~~~v~~~~~s~~~ 641 (1096)
..-...... +.+.-+.|+|..
T Consensus 328 WYLK~e~~i--p~~s~vkwhpe~ 348 (1243)
T COG5290 328 WYLKVERQI--PGISYVKWHPEE 348 (1243)
T ss_pred EEEEEeecC--CCcceeeecccc
Confidence 544433332 266788999954
No 500
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=74.03 E-value=49 Score=33.92 Aligned_cols=146 Identities=13% Similarity=0.125 Sum_probs=81.3
Q ss_pred EEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC----CeeeEEEc-CcCccceEEEEEeC
Q 001343 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE----GTIKRTYA-GFRKKSNGVVQFDT 595 (1096)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~----~~~~~~~~-~~~~~~i~~~~~~~ 595 (1096)
.+||+.+.+..-.....+..+.+-++.+||+.+.+|+. .++...+++++..+ ......-. -....-......-+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 46888877655433334445666678899999999884 44667788888654 11111100 01111233355668
Q ss_pred CCCEEEEEEcCC-eEEEEeCCC-Ce-EEE--Eeec---CCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCcccccc
Q 001343 596 TQNHFLAVGEDS-QIKFWDMDN-VN-ILT--STDA---EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRA 667 (1096)
Q Consensus 596 ~~~~l~~~~~dg-~i~iwd~~~-~~-~~~--~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 667 (1096)
||+.|+.|+... ...+|.... .. ... .+.. .....--.-+...|+|++++.+..+. .|||..++ ..++.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n-~v~~~ 204 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN-TVVRT 204 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC-eEEee
Confidence 999999988664 345555422 11 111 1110 01111223566789999998888654 45687766 34444
Q ss_pred ccC
Q 001343 668 VEN 670 (1096)
Q Consensus 668 ~~~ 670 (1096)
+..
T Consensus 205 lP~ 207 (243)
T PF07250_consen 205 LPD 207 (243)
T ss_pred CCC
Confidence 443
Done!