Query 001343
Match_columns 1096
No_of_seqs 959 out of 4916
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 23:16:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 1.6E-67 5.4E-72 636.2 76.1 565 339-1058 10-577 (577)
2 1nr0_A Actin interacting prote 100.0 6.1E-66 2.1E-70 622.2 70.8 577 343-1060 17-610 (611)
3 1nr0_A Actin interacting prote 100.0 7E-62 2.4E-66 586.7 71.1 555 314-1005 29-610 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 1.3E-61 4.4E-66 584.6 70.5 533 327-1003 42-577 (577)
5 3sfz_A APAF-1, apoptotic pepti 100.0 8.4E-63 2.9E-67 649.9 64.4 615 341-1061 612-1249(1249)
6 1pgu_A Actin interacting prote 100.0 1.8E-59 6.2E-64 571.1 65.7 558 342-1061 16-614 (615)
7 2oaj_A Protein SNI1; WD40 repe 100.0 2.7E-56 9.2E-61 556.2 63.3 607 338-1072 11-796 (902)
8 3sfz_A APAF-1, apoptotic pepti 100.0 2.4E-56 8.3E-61 588.3 64.0 583 401-1064 610-1210(1249)
9 1pgu_A Actin interacting prote 100.0 2E-54 7E-59 526.5 65.2 546 315-1006 30-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 1.1E-50 3.8E-55 505.6 67.9 604 327-1049 43-817 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 2.2E-47 7.6E-52 480.5 55.1 574 338-1062 6-602 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-44 4.3E-49 455.5 51.1 464 401-1057 8-501 (814)
13 1vyh_C Platelet-activating fac 100.0 1.4E-44 4.9E-49 412.8 41.0 283 342-658 106-409 (410)
14 3ow8_A WD repeat-containing pr 100.0 1E-39 3.5E-44 358.7 41.0 292 335-658 22-319 (321)
15 1got_B GT-beta; complex (GTP-b 100.0 3.8E-39 1.3E-43 358.3 45.6 292 335-657 45-340 (340)
16 2pbi_B Guanine nucleotide-bind 100.0 6.3E-39 2.2E-43 358.1 44.2 294 336-657 55-354 (354)
17 3frx_A Guanine nucleotide-bind 100.0 1.3E-38 4.4E-43 350.4 42.2 299 337-661 9-318 (319)
18 2ynn_A Coatomer subunit beta'; 100.0 1.5E-38 5.3E-43 347.2 41.3 290 337-660 5-302 (304)
19 3iz6_a 40S ribosomal protein R 100.0 5.8E-39 2E-43 362.7 35.6 301 335-661 56-376 (380)
20 1vyh_C Platelet-activating fac 100.0 4.3E-38 1.5E-42 359.2 41.8 246 402-661 104-370 (410)
21 4g56_B MGC81050 protein; prote 100.0 4E-38 1.4E-42 351.8 37.0 292 342-661 40-344 (357)
22 3ow8_A WD repeat-containing pr 100.0 1.4E-37 4.9E-42 341.6 40.6 248 402-661 28-280 (321)
23 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.9E-37 6.5E-42 345.2 41.6 300 336-661 6-336 (345)
24 4gqb_B Methylosome protein 50; 100.0 1.2E-37 4.1E-42 344.5 38.1 296 343-661 29-332 (344)
25 1got_B GT-beta; complex (GTP-b 100.0 5.3E-37 1.8E-41 341.0 43.4 248 401-661 50-302 (340)
26 4ery_A WD repeat-containing pr 100.0 1E-36 3.5E-41 335.0 45.0 291 336-659 14-311 (312)
27 1r5m_A SIR4-interacting protei 100.0 6.2E-37 2.1E-41 353.6 43.8 357 338-794 39-424 (425)
28 1erj_A Transcriptional repress 100.0 1.1E-36 3.8E-41 345.8 41.5 307 337-660 57-389 (393)
29 2ynn_A Coatomer subunit beta'; 100.0 2E-36 6.9E-41 330.4 40.9 248 401-661 8-260 (304)
30 2xzm_R RACK1; ribosome, transl 100.0 1.6E-36 5.3E-41 337.9 40.3 299 337-661 13-341 (343)
31 2hes_X YDR267CP; beta-propelle 100.0 2.5E-36 8.6E-41 333.8 40.2 294 336-660 5-328 (330)
32 2pbi_B Guanine nucleotide-bind 100.0 4.7E-36 1.6E-40 334.8 42.2 248 402-661 60-316 (354)
33 1r5m_A SIR4-interacting protei 100.0 1.5E-36 5.2E-41 350.3 38.9 348 403-903 42-424 (425)
34 4g56_B MGC81050 protein; prote 100.0 5.2E-37 1.8E-41 342.8 33.1 247 763-1063 93-345 (357)
35 4aow_A Guanine nucleotide-bind 100.0 8E-36 2.7E-40 332.7 42.4 302 334-661 27-338 (340)
36 2pm9_A Protein WEB1, protein t 100.0 2.8E-37 9.7E-42 355.3 30.8 366 342-744 10-413 (416)
37 3iz6_a 40S ribosomal protein R 100.0 1.1E-36 3.7E-41 344.1 31.4 249 402-661 62-330 (380)
38 3frx_A Guanine nucleotide-bind 100.0 3.3E-35 1.1E-39 323.1 41.7 247 401-661 12-268 (319)
39 4ery_A WD repeat-containing pr 100.0 7.1E-35 2.4E-39 320.3 43.8 250 401-661 18-269 (312)
40 1gxr_A ESG1, transducin-like e 100.0 2.9E-35 1E-39 327.7 40.8 285 343-661 8-297 (337)
41 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.9E-35 1.7E-39 325.7 40.4 251 401-661 10-284 (345)
42 4gqb_B Methylosome protein 50; 100.0 2.9E-35 9.9E-40 325.4 37.3 246 404-661 28-290 (344)
43 1k32_A Tricorn protease; prote 100.0 6.9E-34 2.4E-38 364.4 54.6 515 343-1063 13-639 (1045)
44 3vl1_A 26S proteasome regulato 100.0 1.4E-35 4.7E-40 341.6 34.1 283 345-661 57-366 (420)
45 3ei3_B DNA damage-binding prot 100.0 1.1E-34 3.7E-39 329.3 38.7 295 336-660 64-382 (383)
46 3dm0_A Maltose-binding peripla 100.0 1.1E-34 3.6E-39 356.1 41.4 295 339-659 376-692 (694)
47 2xzm_R RACK1; ribosome, transl 100.0 6.7E-34 2.3E-38 316.6 42.9 246 401-661 16-286 (343)
48 2j04_B YDR362CP, TAU91; beta p 100.0 8.9E-36 3.1E-40 345.9 28.2 359 334-795 123-517 (524)
49 1sq9_A Antiviral protein SKI8; 100.0 2.5E-34 8.5E-39 328.4 39.0 295 338-661 9-396 (397)
50 1gxr_A ESG1, transducin-like e 100.0 2.4E-33 8.3E-38 312.1 45.0 293 335-658 42-335 (337)
51 3zwl_B Eukaryotic translation 100.0 2.1E-33 7E-38 317.1 44.3 286 340-661 28-347 (369)
52 3odt_A Protein DOA1; ubiquitin 100.0 1.7E-33 5.8E-38 309.8 42.1 287 336-661 9-297 (313)
53 1erj_A Transcriptional repress 100.0 6.7E-34 2.3E-38 322.9 39.4 289 404-745 62-389 (393)
54 3vl1_A 26S proteasome regulato 100.0 2.3E-34 7.9E-39 331.3 35.7 333 408-861 58-419 (420)
55 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2E-33 6.7E-38 325.7 43.6 304 342-692 116-422 (445)
56 2hes_X YDR267CP; beta-propelle 100.0 1.2E-33 3.9E-38 312.5 39.4 247 401-661 9-281 (330)
57 3gre_A Serine/threonine-protei 100.0 9.1E-35 3.1E-39 336.5 32.0 385 351-901 34-437 (437)
58 2j04_B YDR362CP, TAU91; beta p 100.0 4.9E-35 1.7E-39 339.7 28.9 349 405-904 132-517 (524)
59 3v7d_B Cell division control p 100.0 8.6E-33 2.9E-37 322.6 48.0 278 341-661 118-422 (464)
60 2pm9_A Protein WEB1, protein t 100.0 7.5E-35 2.6E-39 335.0 27.7 307 327-661 49-415 (416)
61 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1E-32 3.4E-37 319.8 45.6 319 401-905 113-443 (445)
62 4e54_B DNA damage-binding prot 100.0 1.4E-34 4.8E-39 333.6 29.9 293 342-661 117-431 (435)
63 1k8k_C P40, ARP2/3 complex 41 100.0 9.5E-34 3.2E-38 320.4 35.7 292 343-666 7-367 (372)
64 1k32_A Tricorn protease; prote 100.0 2.5E-32 8.5E-37 349.9 53.3 514 317-1008 26-639 (1045)
65 3i2n_A WD repeat-containing pr 100.0 1.1E-33 3.9E-38 317.7 34.8 294 337-661 10-354 (357)
66 3v7d_B Cell division control p 100.0 2E-32 7E-37 319.4 46.5 319 402-902 117-461 (464)
67 4aow_A Guanine nucleotide-bind 100.0 1.7E-32 5.9E-37 305.7 42.0 298 401-795 33-337 (340)
68 3k26_A Polycomb protein EED; W 100.0 7.2E-34 2.5E-38 320.5 30.9 290 342-659 16-365 (366)
69 3gre_A Serine/threonine-protei 100.0 3.9E-33 1.3E-37 322.8 32.8 298 333-657 50-437 (437)
70 2j04_A TAU60, YPL007P, hypothe 100.0 7.3E-34 2.5E-38 317.9 25.3 315 343-784 14-350 (588)
71 3dwl_C Actin-related protein 2 100.0 3.1E-34 1.1E-38 324.9 21.5 285 343-658 10-377 (377)
72 4gga_A P55CDC, cell division c 100.0 8.1E-32 2.8E-36 309.1 41.9 281 346-661 107-396 (420)
73 4aez_A CDC20, WD repeat-contai 100.0 6.8E-32 2.3E-36 307.8 40.3 288 342-662 89-382 (401)
74 3zwl_B Eukaryotic translation 100.0 1.3E-31 4.5E-36 302.3 42.0 300 401-795 27-346 (369)
75 4h5i_A Guanine nucleotide-exch 100.0 1.5E-32 5.1E-37 307.5 31.2 300 343-661 13-344 (365)
76 2pm7_B Protein transport prote 100.0 6.4E-32 2.2E-36 293.6 35.1 250 402-659 5-284 (297)
77 1k8k_C P40, ARP2/3 complex 41 100.0 7.7E-32 2.6E-36 304.7 37.0 244 402-660 4-274 (372)
78 3ei3_B DNA damage-binding prot 100.0 7.4E-32 2.5E-36 305.9 36.8 299 446-904 68-382 (383)
79 1sq9_A Antiviral protein SKI8; 100.0 8.4E-32 2.9E-36 307.4 37.4 249 401-661 11-323 (397)
80 4a11_B DNA excision repair pro 100.0 1E-31 3.6E-36 307.8 38.4 299 342-661 41-366 (408)
81 3dm0_A Maltose-binding peripla 100.0 8.3E-32 2.8E-36 330.3 39.8 248 401-661 377-633 (694)
82 4ggc_A P55CDC, cell division c 100.0 6.1E-31 2.1E-35 290.0 41.5 281 347-661 28-316 (318)
83 3dw8_B Serine/threonine-protei 100.0 3.2E-32 1.1E-36 316.3 32.4 299 340-658 24-444 (447)
84 2pm7_B Protein transport prote 100.0 1.4E-31 4.8E-36 291.0 35.2 248 341-616 6-285 (297)
85 2j04_A TAU60, YPL007P, hypothe 100.0 2.8E-33 9.7E-38 313.2 19.8 222 405-661 14-255 (588)
86 1p22_A F-BOX/WD-repeat protein 100.0 3E-31 1E-35 306.0 36.6 272 342-661 131-415 (435)
87 3k26_A Polycomb protein EED; W 100.0 2.3E-31 8E-36 299.9 34.2 249 401-661 13-319 (366)
88 3i2n_A WD repeat-containing pr 100.0 3.1E-31 1.1E-35 297.8 35.0 310 400-795 12-353 (357)
89 3dwl_C Actin-related protein 2 100.0 1.3E-32 4.4E-37 311.6 23.8 243 402-660 7-281 (377)
90 4h5i_A Guanine nucleotide-exch 100.0 1.4E-31 4.7E-36 299.6 30.7 303 631-1007 16-344 (365)
91 1yfq_A Cell cycle arrest prote 100.0 6.2E-31 2.1E-35 293.4 35.2 278 342-656 9-320 (342)
92 3odt_A Protein DOA1; ubiquitin 100.0 2.1E-30 7.1E-35 285.0 38.5 239 401-661 13-256 (313)
93 4a11_B DNA excision repair pro 100.0 1.2E-30 4.2E-35 299.0 38.1 327 474-906 22-367 (408)
94 4e54_B DNA damage-binding prot 100.0 7E-32 2.4E-36 311.0 27.6 208 446-661 114-328 (435)
95 3mmy_A MRNA export factor; mRN 100.0 1.7E-30 5.9E-35 293.0 34.7 289 334-658 28-344 (368)
96 2aq5_A Coronin-1A; WD40 repeat 100.0 4.5E-31 1.5E-35 301.4 29.5 295 346-661 36-343 (402)
97 3bg1_A Protein SEC13 homolog; 100.0 2.5E-31 8.6E-36 291.7 25.8 248 342-615 11-292 (316)
98 3bg1_A Protein SEC13 homolog; 100.0 1.9E-31 6.4E-36 292.7 24.4 249 401-659 8-292 (316)
99 4aez_A CDC20, WD repeat-contai 100.0 8.1E-30 2.8E-34 290.6 36.4 279 408-795 95-380 (401)
100 3jrp_A Fusion protein of prote 100.0 4.4E-30 1.5E-34 291.0 34.1 254 338-619 4-290 (379)
101 3f3f_A Nucleoporin SEH1; struc 100.0 3.1E-30 1.1E-34 288.5 31.4 296 341-661 8-338 (351)
102 4gga_A P55CDC, cell division c 100.0 5.3E-29 1.8E-33 285.6 40.9 267 327-624 129-403 (420)
103 3dw8_B Serine/threonine-protei 100.0 8.4E-30 2.9E-34 295.9 33.7 247 405-661 27-374 (447)
104 3jrp_A Fusion protein of prote 100.0 3.1E-29 1.1E-33 284.0 33.0 253 401-661 6-288 (379)
105 4ggc_A P55CDC, cell division c 100.0 2.4E-28 8.2E-33 269.2 38.7 236 409-661 28-274 (318)
106 1p22_A F-BOX/WD-repeat protein 100.0 8.3E-29 2.8E-33 285.6 35.5 273 403-745 130-414 (435)
107 1yfq_A Cell cycle arrest prote 100.0 8.2E-29 2.8E-33 276.1 33.9 248 402-661 7-283 (342)
108 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.6E-28 8.9E-33 282.7 37.6 298 345-660 5-391 (450)
109 3f3f_A Nucleoporin SEH1; struc 100.0 1.9E-28 6.4E-33 274.0 34.1 214 400-620 5-253 (351)
110 2aq5_A Coronin-1A; WD40 repeat 100.0 7.8E-29 2.7E-33 282.8 30.6 274 408-692 36-328 (402)
111 3mmy_A MRNA export factor; mRN 100.0 6.3E-28 2.2E-32 272.0 37.6 277 401-695 34-333 (368)
112 3jro_A Fusion protein of prote 100.0 2.5E-29 8.4E-34 309.6 25.6 251 342-618 7-287 (753)
113 3vu4_A KMHSV2; beta-propeller 100.0 3.3E-28 1.1E-32 271.4 30.7 276 342-661 17-337 (355)
114 1l0q_A Surface layer protein; 100.0 8E-27 2.7E-31 265.4 40.7 276 358-671 3-285 (391)
115 2xyi_A Probable histone-bindin 100.0 5.8E-28 2E-32 277.6 31.4 266 336-617 120-411 (430)
116 3bws_A Protein LP49; two-domai 100.0 3.6E-27 1.2E-31 272.3 38.1 302 327-659 103-431 (433)
117 2xyi_A Probable histone-bindin 100.0 3.2E-27 1.1E-31 271.5 34.4 307 344-661 45-411 (430)
118 3vu4_A KMHSV2; beta-propeller 100.0 9.1E-27 3.1E-31 259.7 33.8 238 402-661 15-272 (355)
119 3jro_A Fusion protein of prote 100.0 9.4E-28 3.2E-32 295.5 28.2 253 401-661 4-286 (753)
120 3bws_A Protein LP49; two-domai 100.0 3.4E-26 1.2E-30 264.2 39.6 336 407-904 61-432 (433)
121 2w18_A PALB2, fancn, partner a 100.0 1E-26 3.4E-31 244.0 30.9 279 633-1059 43-355 (356)
122 4gq1_A NUP37; propeller, trans 100.0 3.9E-27 1.3E-31 266.8 28.8 302 345-658 16-387 (393)
123 1l0q_A Surface layer protein; 100.0 1.3E-25 4.4E-30 255.4 40.1 322 327-694 16-364 (391)
124 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.4E-26 1.2E-30 264.9 35.6 241 407-658 5-337 (450)
125 3lrv_A PRE-mRNA-splicing facto 100.0 2.2E-27 7.7E-32 264.0 24.3 267 351-659 43-332 (343)
126 3lrv_A PRE-mRNA-splicing facto 100.0 2.7E-27 9.1E-32 263.4 22.0 280 721-1061 43-333 (343)
127 1nir_A Nitrite reductase; hemo 99.9 4.3E-25 1.5E-29 258.8 39.2 341 546-1014 145-522 (543)
128 2w18_A PALB2, fancn, partner a 99.9 2E-25 6.8E-30 234.2 32.2 284 347-658 42-355 (356)
129 4gq1_A NUP37; propeller, trans 99.9 2.1E-26 7.1E-31 260.8 23.0 248 341-614 86-387 (393)
130 1nir_A Nitrite reductase; hemo 99.9 6.4E-24 2.2E-28 248.8 39.4 275 351-661 144-459 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 4.1E-24 1.4E-28 243.2 29.0 304 345-689 63-409 (415)
132 2ecf_A Dipeptidyl peptidase IV 99.9 8.2E-23 2.8E-27 253.3 33.7 334 344-697 36-444 (741)
133 1xfd_A DIP, dipeptidyl aminope 99.9 3.7E-23 1.3E-27 255.7 26.4 321 346-697 18-429 (723)
134 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.9E-22 9.9E-27 227.9 31.1 278 327-641 97-409 (415)
135 2ecf_A Dipeptidyl peptidase IV 99.9 7E-22 2.4E-26 245.0 34.8 328 406-793 36-457 (741)
136 3u4y_A Uncharacterized protein 99.9 7.9E-21 2.7E-25 210.2 34.3 279 350-661 3-305 (331)
137 3vgz_A Uncharacterized protein 99.9 2.9E-20 1E-24 207.7 35.2 273 342-651 38-335 (353)
138 2z3z_A Dipeptidyl aminopeptida 99.9 1.6E-20 5.5E-25 231.2 35.6 237 409-659 28-341 (706)
139 1xfd_A DIP, dipeptidyl aminope 99.9 1.4E-20 4.8E-25 232.6 31.5 233 408-651 18-329 (723)
140 2ojh_A Uncharacterized protein 99.9 1.2E-20 4E-25 204.9 26.1 257 362-651 17-293 (297)
141 2z3z_A Dipeptidyl aminopeptida 99.9 1.4E-20 4.6E-25 231.8 29.1 320 346-695 27-418 (706)
142 1ri6_A Putative isomerase YBHE 99.9 1.7E-19 5.7E-24 200.6 34.1 298 357-691 5-336 (343)
143 3u4y_A Uncharacterized protein 99.8 9.8E-19 3.3E-23 193.3 34.9 275 508-906 10-306 (331)
144 3vgz_A Uncharacterized protein 99.8 9.8E-19 3.3E-23 195.3 35.1 268 406-695 40-331 (353)
145 1ri6_A Putative isomerase YBHE 99.8 6.4E-19 2.2E-23 195.9 33.0 284 327-642 19-335 (343)
146 1pby_B Quinohemoprotein amine 99.8 1.9E-19 6.5E-24 199.6 28.3 267 359-661 3-311 (337)
147 2ojh_A Uncharacterized protein 99.8 2.3E-19 7.9E-24 194.7 27.1 248 327-607 26-293 (297)
148 3o4h_A Acylamino-acid-releasin 99.8 2.6E-19 8.8E-24 214.6 28.0 271 344-659 21-314 (582)
149 1pby_B Quinohemoprotein amine 99.8 3.3E-18 1.1E-22 189.6 32.8 298 509-871 2-320 (337)
150 2oit_A Nucleoporin 214KDA; NH2 99.8 1.7E-18 5.9E-23 197.2 30.4 256 344-614 36-331 (434)
151 1z68_A Fibroblast activation p 99.8 2.5E-19 8.6E-24 220.9 24.4 347 590-1014 20-451 (719)
152 1z68_A Fibroblast activation p 99.8 1.9E-19 6.4E-24 222.1 20.2 311 349-695 20-427 (719)
153 3hfq_A Uncharacterized protein 99.8 1.3E-17 4.5E-22 185.5 31.8 269 327-621 20-324 (347)
154 3o4h_A Acylamino-acid-releasin 99.8 2.9E-18 1E-22 205.4 25.9 262 406-697 21-301 (582)
155 1jmx_B Amine dehydrogenase; ox 99.8 9.6E-18 3.3E-22 186.9 28.0 280 349-668 4-332 (349)
156 3hfq_A Uncharacterized protein 99.8 4.7E-17 1.6E-21 181.0 33.0 244 405-659 38-316 (347)
157 4a5s_A Dipeptidyl peptidase 4 99.8 3.3E-17 1.1E-21 201.6 34.2 353 588-1013 19-456 (740)
158 1jmx_B Amine dehydrogenase; ox 99.8 6.6E-17 2.2E-21 180.1 32.2 301 543-1014 4-333 (349)
159 3scy_A Hypothetical bacterial 99.8 1.3E-16 4.5E-21 178.4 34.6 271 359-659 15-336 (361)
160 3pe7_A Oligogalacturonate lyas 99.8 7.8E-17 2.7E-21 182.4 32.9 298 334-659 19-381 (388)
161 4a5s_A Dipeptidyl peptidase 4 99.8 2.4E-17 8.2E-22 202.9 28.9 314 346-696 18-434 (740)
162 3scy_A Hypothetical bacterial 99.8 3.1E-16 1.1E-20 175.4 35.3 282 327-638 31-360 (361)
163 3pe7_A Oligogalacturonate lyas 99.8 1E-16 3.4E-21 181.5 28.1 253 402-661 26-330 (388)
164 2oit_A Nucleoporin 214KDA; NH2 99.8 8.4E-17 2.9E-21 183.2 25.4 244 406-658 36-331 (434)
165 1jof_A Carboxy-CIS,CIS-muconat 99.7 3.7E-16 1.3E-20 174.7 30.0 246 406-661 39-342 (365)
166 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.6E-15 5.5E-20 169.5 28.3 250 343-617 38-342 (365)
167 2oiz_A Aromatic amine dehydrog 99.7 3.2E-15 1.1E-19 166.0 30.2 312 507-944 14-360 (361)
168 3c5m_A Oligogalacturonate lyas 99.7 6.4E-16 2.2E-20 175.5 25.0 282 347-658 38-380 (396)
169 2oiz_A Aromatic amine dehydrog 99.7 4.4E-15 1.5E-19 164.8 29.0 285 365-690 29-360 (361)
170 1qks_A Cytochrome CD1 nitrite 99.7 1.6E-13 5.3E-18 159.8 40.6 328 563-1014 176-546 (567)
171 3fvz_A Peptidyl-glycine alpha- 99.7 2E-14 6.7E-19 157.9 29.8 248 345-616 24-322 (329)
172 3azo_A Aminopeptidase; POP fam 99.7 5.6E-15 1.9E-19 180.1 27.9 286 342-661 21-370 (662)
173 3azo_A Aminopeptidase; POP fam 99.7 1.6E-14 5.4E-19 176.1 31.8 251 399-658 16-321 (662)
174 2gop_A Trilobed protease; beta 99.7 4E-14 1.4E-18 157.3 29.9 263 344-659 14-330 (347)
175 1q7f_A NHL, brain tumor CG1071 99.7 1.5E-13 5.1E-18 147.8 33.1 245 343-617 28-281 (286)
176 1q7f_A NHL, brain tumor CG1071 99.6 1.5E-13 5.1E-18 147.8 32.0 244 404-660 27-280 (286)
177 1qks_A Cytochrome CD1 nitrite 99.6 8E-13 2.7E-17 153.8 39.9 272 359-661 169-478 (567)
178 3fvz_A Peptidyl-glycine alpha- 99.6 5E-14 1.7E-18 154.6 27.9 245 406-660 23-322 (329)
179 3c5m_A Oligogalacturonate lyas 99.6 7.2E-15 2.5E-19 166.7 21.6 242 408-661 37-330 (396)
180 4a2l_A BT_4663, two-component 99.6 2.2E-09 7.5E-14 133.0 67.9 585 344-1061 42-659 (795)
181 4a2l_A BT_4663, two-component 99.6 6.5E-10 2.2E-14 137.8 62.2 536 344-1005 87-658 (795)
182 2dg1_A DRP35, lactonase; beta 99.6 6.7E-13 2.3E-17 146.3 30.3 272 345-651 6-301 (333)
183 2xdw_A Prolyl endopeptidase; a 99.6 7.1E-13 2.4E-17 162.3 33.2 249 403-662 121-416 (710)
184 3v9f_A Two-component system se 99.6 1.7E-08 5.9E-13 124.7 70.2 591 344-1061 18-656 (781)
185 3no2_A Uncharacterized protein 99.6 1.1E-12 3.9E-17 138.7 27.8 243 359-636 7-272 (276)
186 2xdw_A Prolyl endopeptidase; a 99.6 1.6E-12 5.4E-17 159.1 32.7 247 343-618 123-416 (710)
187 2z2n_A Virginiamycin B lyase; 99.5 2.1E-11 7.3E-16 131.8 37.9 282 343-661 13-296 (299)
188 3e5z_A Putative gluconolactona 99.5 2.3E-12 8E-17 139.1 29.7 242 342-619 25-289 (296)
189 3dsm_A Uncharacterized protein 99.5 2.5E-12 8.5E-17 140.7 28.6 276 365-668 15-308 (328)
190 2bkl_A Prolyl endopeptidase; m 99.5 6.3E-13 2.1E-17 162.2 26.3 248 403-662 117-399 (695)
191 2bkl_A Prolyl endopeptidase; m 99.5 5.2E-13 1.8E-17 162.9 25.2 248 343-619 119-400 (695)
192 3e5z_A Putative gluconolactona 99.5 2.4E-12 8.1E-17 139.1 27.6 237 402-661 23-287 (296)
193 1rwi_B Serine/threonine-protei 99.5 2.3E-12 7.7E-17 137.2 25.3 239 346-618 25-266 (270)
194 2dg1_A DRP35, lactonase; beta 99.5 1.8E-11 6.1E-16 134.8 32.8 236 342-607 42-301 (333)
195 2z2n_A Virginiamycin B lyase; 99.5 1.7E-10 5.7E-15 124.7 38.9 239 404-658 12-253 (299)
196 2qc5_A Streptogramin B lactona 99.5 1.7E-10 5.7E-15 124.7 37.2 279 343-658 18-298 (300)
197 2gop_A Trilobed protease; beta 99.5 9.3E-12 3.2E-16 138.0 27.7 224 345-618 59-332 (347)
198 3v9f_A Two-component system se 99.5 6.6E-08 2.2E-12 119.5 65.0 545 406-1062 18-612 (781)
199 3sjl_D Methylamine dehydrogena 99.5 9.5E-12 3.3E-16 134.9 26.5 295 350-688 38-384 (386)
200 1rwi_B Serine/threonine-protei 99.5 5.8E-12 2E-16 134.0 24.1 239 408-661 25-265 (270)
201 2mad_H Methylamine dehydrogena 99.4 2.9E-10 1E-14 125.7 36.6 274 351-661 27-351 (373)
202 1yr2_A Prolyl oligopeptidase; 99.4 9.5E-12 3.3E-16 152.8 26.6 245 404-661 160-442 (741)
203 3sjl_D Methylamine dehydrogena 99.4 8.3E-11 2.9E-15 127.5 30.5 293 504-906 40-365 (386)
204 3no2_A Uncharacterized protein 99.4 2.1E-11 7.2E-16 128.9 25.2 216 416-648 3-231 (276)
205 3dsm_A Uncharacterized protein 99.4 3.4E-11 1.2E-15 131.6 27.8 245 345-625 44-310 (328)
206 1yr2_A Prolyl oligopeptidase; 99.4 3E-11 1E-15 148.3 27.2 244 343-619 161-444 (741)
207 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.6E-10 5.6E-15 125.8 29.6 248 343-616 16-299 (314)
208 2qc5_A Streptogramin B lactona 99.3 2.2E-09 7.5E-14 115.9 35.6 271 405-696 18-290 (300)
209 3c75_H MADH, methylamine dehyd 99.3 1.7E-10 5.9E-15 127.7 25.3 278 354-668 82-409 (426)
210 2mad_H Methylamine dehydrogena 99.3 5.1E-09 1.7E-13 115.8 37.3 265 334-623 56-357 (373)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 5E-10 1.7E-14 122.0 28.3 245 405-661 16-300 (314)
212 3hrp_A Uncharacterized protein 99.3 1.2E-09 4.1E-14 122.7 28.6 237 345-614 131-408 (409)
213 3c75_H MADH, methylamine dehyd 99.3 1.2E-09 4.2E-14 120.9 27.7 291 505-906 81-404 (426)
214 3iuj_A Prolyl endopeptidase; h 99.2 1.2E-09 4.1E-14 132.7 28.1 250 343-620 127-409 (693)
215 3g4e_A Regucalcin; six bladed 99.2 5.8E-09 2E-13 112.2 30.1 229 343-605 11-261 (297)
216 2qe8_A Uncharacterized protein 99.2 4.1E-10 1.4E-14 123.9 21.5 270 345-651 17-312 (343)
217 3hrp_A Uncharacterized protein 99.2 3.9E-09 1.3E-13 118.5 28.7 238 407-658 131-408 (409)
218 3iuj_A Prolyl endopeptidase; h 99.2 1.2E-09 4.1E-14 132.6 25.7 244 403-661 125-406 (693)
219 1xip_A Nucleoporin NUP159; bet 99.2 4.9E-10 1.7E-14 122.2 19.5 183 346-558 39-233 (388)
220 3g4e_A Regucalcin; six bladed 99.2 1.2E-08 4E-13 109.7 30.3 228 405-649 11-261 (297)
221 2ghs_A AGR_C_1268P; regucalcin 99.2 1.3E-08 4.4E-13 111.0 29.5 225 346-606 50-292 (326)
222 3dr2_A Exported gluconolactona 99.2 5E-09 1.7E-13 113.2 26.0 233 343-613 43-303 (305)
223 4a0p_A LRP6, LRP-6, low-densit 99.1 4.9E-05 1.7E-09 89.6 59.1 527 420-1063 8-551 (628)
224 2ghs_A AGR_C_1268P; regucalcin 99.1 6.1E-08 2.1E-12 105.6 31.7 223 408-650 50-292 (326)
225 3dr2_A Exported gluconolactona 99.1 1.2E-08 4.1E-13 110.2 25.8 236 402-654 40-301 (305)
226 3s94_A LRP-6, low-density lipo 99.1 2.5E-05 8.5E-10 92.0 55.5 525 426-1063 16-553 (619)
227 1xip_A Nucleoporin NUP159; bet 99.1 2.6E-09 8.7E-14 116.5 18.5 174 408-604 39-232 (388)
228 1yiq_A Quinohemoprotein alcoho 99.1 2.3E-08 8E-13 120.1 27.9 308 359-695 72-535 (689)
229 3s94_A LRP-6, low-density lipo 99.1 0.0001 3.5E-09 86.7 58.4 523 365-1008 16-553 (619)
230 1mda_H Methylamine dehydrogena 99.1 2.3E-08 8E-13 108.8 24.8 267 565-906 47-348 (368)
231 1mda_H Methylamine dehydrogena 99.0 7.2E-09 2.4E-13 112.9 19.7 267 359-670 34-355 (368)
232 1kb0_A Quinohemoprotein alcoho 99.0 4.5E-08 1.5E-12 117.4 28.6 135 509-651 78-264 (677)
233 1yiq_A Quinohemoprotein alcoho 99.0 8.2E-08 2.8E-12 115.4 30.9 138 509-652 71-257 (689)
234 2qe8_A Uncharacterized protein 99.0 2.4E-08 8.2E-13 109.8 23.6 260 765-1058 17-318 (343)
235 1kb0_A Quinohemoprotein alcoho 99.0 6.5E-08 2.2E-12 116.0 28.3 308 359-694 79-536 (677)
236 3q7m_A Lipoprotein YFGL, BAMB; 99.0 5.6E-07 1.9E-11 100.4 34.1 270 359-662 55-339 (376)
237 4a0p_A LRP6, LRP-6, low-densit 99.0 0.00019 6.5E-09 84.5 61.4 528 365-1010 13-553 (628)
238 3q7m_A Lipoprotein YFGL, BAMB; 99.0 2.7E-07 9.3E-12 103.0 31.1 256 359-657 105-375 (376)
239 3hxj_A Pyrrolo-quinoline quino 99.0 3.9E-08 1.3E-12 107.7 23.0 282 327-660 42-324 (330)
240 3ei3_A DNA damage-binding prot 98.9 0.00058 2E-08 86.0 60.8 285 347-659 329-635 (1158)
241 2ece_A 462AA long hypothetical 98.9 2.3E-07 7.7E-12 101.0 24.9 237 350-604 87-399 (462)
242 2hz6_A Endoplasmic reticulum t 98.9 9E-10 3.1E-14 122.2 5.6 190 417-626 8-202 (369)
243 3hxj_A Pyrrolo-quinoline quino 98.9 8.7E-08 3E-12 104.8 21.2 261 349-661 24-284 (330)
244 2hz6_A Endoplasmic reticulum t 98.9 1.4E-09 4.7E-14 120.7 6.0 188 842-1069 8-200 (369)
245 2ece_A 462AA long hypothetical 98.8 7.3E-07 2.5E-11 97.0 25.6 232 461-696 93-399 (462)
246 1npe_A Nidogen, entactin; glyc 98.8 1.1E-05 3.8E-10 84.8 33.6 222 407-642 36-263 (267)
247 1npe_A Nidogen, entactin; glyc 98.7 3.6E-05 1.2E-09 80.8 34.1 258 419-690 2-263 (267)
248 1fwx_A Nitrous oxide reductase 98.7 2.7E-07 9.3E-12 104.1 16.3 279 358-649 16-407 (595)
249 1fwx_A Nitrous oxide reductase 98.6 1.5E-06 5E-11 98.2 21.3 192 462-660 100-361 (595)
250 3ei3_A DNA damage-binding prot 98.6 0.0015 5.1E-08 82.2 48.9 226 407-650 514-757 (1158)
251 1kv9_A Type II quinohemoprotei 98.6 1.2E-05 4.2E-10 96.2 28.9 284 359-668 68-495 (668)
252 2iwa_A Glutamine cyclotransfer 98.6 3.9E-06 1.3E-10 85.9 20.5 209 833-1063 22-239 (266)
253 2iwa_A Glutamine cyclotransfer 98.6 1.2E-05 4E-10 82.4 23.7 205 335-573 9-237 (266)
254 3ott_A Two-component system se 98.5 0.0076 2.6E-07 73.7 62.2 537 344-1005 62-625 (758)
255 1w6s_A Methanol dehydrogenase 98.5 0.0001 3.5E-09 86.0 32.3 112 509-626 63-201 (599)
256 3ott_A Two-component system se 98.5 0.0077 2.6E-07 73.7 63.3 538 344-1010 21-590 (758)
257 2ad6_A Methanol dehydrogenase 98.5 0.00015 5E-09 84.8 33.7 172 836-1014 239-502 (571)
258 3nol_A Glutamine cyclotransfer 98.5 1.6E-05 5.6E-10 80.0 21.5 190 336-558 32-244 (262)
259 1kv9_A Type II quinohemoprotei 98.4 3.3E-05 1.1E-09 92.5 27.0 262 359-643 119-514 (668)
260 1w6s_A Methanol dehydrogenase 98.4 7.6E-05 2.6E-09 87.0 28.8 308 360-694 65-532 (599)
261 3nol_A Glutamine cyclotransfer 98.4 2.9E-05 9.8E-10 78.2 21.6 184 454-650 45-245 (262)
262 2xe4_A Oligopeptidase B; hydro 98.4 3.7E-05 1.3E-09 93.7 27.0 245 346-619 175-461 (751)
263 3nok_A Glutaminyl cyclase; bet 98.4 5.3E-06 1.8E-10 83.5 15.8 191 832-1048 55-253 (268)
264 2ad6_A Methanol dehydrogenase 98.4 7.7E-05 2.6E-09 87.2 28.2 305 360-695 65-524 (571)
265 3nok_A Glutaminyl cyclase; bet 98.4 4.3E-05 1.5E-09 76.9 21.9 182 407-605 55-254 (268)
266 2fp8_A Strictosidine synthase; 98.4 8.8E-05 3E-09 80.3 26.7 255 346-616 20-313 (322)
267 2p4o_A Hypothetical protein; p 98.4 0.00022 7.6E-09 76.4 29.5 238 333-606 20-278 (306)
268 1k3i_A Galactose oxidase precu 98.4 1.4E-05 4.9E-10 95.9 22.1 277 349-649 190-530 (656)
269 1flg_A Protein (quinoprotein e 98.4 0.0015 5.1E-08 76.3 38.5 195 835-1047 249-545 (582)
270 2fp8_A Strictosidine synthase; 98.4 7.4E-05 2.5E-09 80.9 25.7 240 408-660 20-313 (322)
271 2xbg_A YCF48-like protein; pho 98.4 0.0018 6.3E-08 69.7 36.3 280 342-657 33-319 (327)
272 3v64_C Agrin; beta propeller, 98.3 0.00098 3.4E-08 72.5 33.8 248 344-624 33-283 (349)
273 2p4o_A Hypothetical protein; p 98.3 0.0003 1E-08 75.3 29.2 228 407-651 32-279 (306)
274 1flg_A Protein (quinoprotein e 98.3 0.0006 2.1E-08 79.7 33.4 311 355-695 68-546 (582)
275 3mbr_X Glutamine cyclotransfer 98.3 0.00018 6E-09 71.9 24.1 184 406-605 20-223 (243)
276 3v65_B Low-density lipoprotein 98.3 0.00083 2.9E-08 74.3 31.5 247 346-625 78-327 (386)
277 3qqz_A Putative uncharacterize 98.2 0.0006 2E-08 69.3 26.9 199 344-570 26-250 (255)
278 3mbr_X Glutamine cyclotransfer 98.2 0.00041 1.4E-08 69.3 24.9 184 452-649 21-223 (243)
279 1ijq_A LDL receptor, low-densi 98.2 0.0039 1.3E-07 66.8 33.4 231 420-661 3-239 (316)
280 1ijq_A LDL receptor, low-densi 98.1 0.0094 3.2E-07 63.8 35.2 231 365-624 8-246 (316)
281 3v64_C Agrin; beta propeller, 98.1 0.0033 1.1E-07 68.3 31.0 226 327-581 55-283 (349)
282 3v65_B Low-density lipoprotein 98.1 0.0021 7.1E-08 71.1 29.7 227 327-582 98-327 (386)
283 1k3i_A Galactose oxidase precu 98.1 0.00029 1E-08 84.5 24.1 276 411-696 190-529 (656)
284 3p5b_L Low density lipoprotein 98.0 0.0085 2.9E-07 66.4 33.3 231 420-661 85-321 (400)
285 2xbg_A YCF48-like protein; pho 98.0 0.018 6.2E-07 61.9 34.0 196 832-1058 122-319 (327)
286 3tc9_A Hypothetical hydrolase; 98.0 0.0013 4.4E-08 73.8 25.7 239 408-658 138-428 (430)
287 2xe4_A Oligopeptidase B; hydro 98.0 0.00069 2.4E-08 82.4 24.9 200 403-614 169-398 (751)
288 3qqz_A Putative uncharacterize 97.9 0.0077 2.6E-07 61.1 27.9 206 446-658 21-251 (255)
289 3p5b_L Low density lipoprotein 97.9 0.011 3.9E-07 65.4 32.0 233 325-582 92-329 (400)
290 2xzh_A Clathrin heavy chain 1; 97.9 0.028 9.5E-07 57.8 31.1 238 349-618 71-334 (365)
291 3sov_A LRP-6, low-density lipo 97.9 0.01 3.6E-07 63.2 30.1 233 365-625 11-247 (318)
292 4hw6_A Hypothetical protein, I 97.9 0.0033 1.1E-07 70.4 26.5 239 408-659 140-432 (433)
293 3m0c_C LDL receptor, low-densi 97.8 0.029 9.9E-07 67.5 33.8 231 420-661 397-633 (791)
294 3sov_A LRP-6, low-density lipo 97.7 0.023 7.9E-07 60.5 29.4 225 427-661 12-239 (318)
295 4hw6_A Hypothetical protein, I 97.7 0.0055 1.9E-07 68.7 25.3 235 345-615 139-432 (433)
296 3tc9_A Hypothetical hydrolase; 97.7 0.0096 3.3E-07 66.7 27.3 155 345-527 137-301 (430)
297 3m0c_C LDL receptor, low-densi 97.7 0.029 1E-06 67.4 32.9 212 405-624 422-640 (791)
298 3amr_A 3-phytase; beta-propell 97.7 0.0092 3.2E-07 62.8 24.9 185 467-659 42-262 (355)
299 3kya_A Putative phosphatase; s 97.7 0.014 4.6E-07 65.4 27.6 244 408-661 140-476 (496)
300 1bpo_A Protein (clathrin); cla 97.6 0.053 1.8E-06 58.1 28.6 238 349-618 70-333 (494)
301 3kya_A Putative phosphatase; s 97.5 0.038 1.3E-06 61.8 27.5 249 346-620 140-479 (496)
302 2p9w_A MAL S 1 allergenic prot 97.4 0.022 7.4E-07 59.5 22.4 163 347-528 15-216 (334)
303 3amr_A 3-phytase; beta-propell 97.4 0.052 1.8E-06 57.2 24.8 199 417-626 39-274 (355)
304 1n7d_A LDL receptor, low-densi 97.3 0.0034 1.2E-07 75.2 17.4 201 832-1063 406-616 (699)
305 2p9w_A MAL S 1 allergenic prot 97.2 0.038 1.3E-06 57.7 21.3 212 763-1008 11-267 (334)
306 1n7d_A LDL receptor, low-densi 97.2 0.002 6.9E-08 77.1 13.7 225 427-661 385-615 (699)
307 2xzh_A Clathrin heavy chain 1; 97.2 0.3 1E-05 50.3 31.7 260 367-661 49-333 (365)
308 2nxp_A Transcription initiatio 97.1 0.00069 2.4E-08 62.5 6.0 78 72-149 52-136 (156)
309 1bpo_A Protein (clathrin); cla 97.0 0.48 1.6E-05 50.9 32.1 260 367-661 48-332 (494)
310 3sre_A PON1, serum paraoxonase 97.0 0.1 3.5E-06 55.8 23.6 197 408-615 51-297 (355)
311 2ism_A Putative oxidoreductase 97.0 0.089 3E-06 57.0 23.4 229 407-648 31-333 (352)
312 2j4b_A TAF5, transcription ini 97.0 0.00033 1.1E-08 62.9 2.9 77 72-149 33-116 (138)
313 3a9g_A Putative uncharacterize 97.0 0.29 9.8E-06 52.9 26.8 232 407-648 29-330 (354)
314 2j49_A Transcription initiatio 96.9 0.0003 1E-08 63.8 2.0 81 67-149 31-118 (148)
315 3a9g_A Putative uncharacterize 96.9 0.22 7.6E-06 53.8 25.2 230 345-604 29-330 (354)
316 2ism_A Putative oxidoreductase 96.8 0.13 4.4E-06 55.7 22.5 107 345-471 31-152 (352)
317 2xn4_A Kelch-like protein 2; s 96.8 0.12 4.3E-06 54.5 22.2 229 418-661 16-277 (302)
318 2vpj_A Kelch-like protein 12; 96.7 0.089 3E-06 55.6 20.2 230 417-661 14-279 (301)
319 2vpj_A Kelch-like protein 12; 96.6 0.14 4.9E-06 54.0 20.8 193 417-620 62-282 (301)
320 2xtc_A F-box-like/WD repeat-co 96.6 0.0021 7E-08 51.3 4.2 36 1-36 1-36 (90)
321 3ii7_A Kelch-like protein 7; p 96.6 0.22 7.4E-06 52.7 21.9 229 420-661 14-273 (306)
322 3ii7_A Kelch-like protein 7; p 96.5 0.26 8.9E-06 52.1 21.8 193 841-1068 54-277 (306)
323 2g8s_A Glucose/sorbosone dehyd 96.4 1.4 4.8E-05 47.4 27.3 234 408-647 19-340 (353)
324 4asc_A Kelch repeat and BTB do 96.3 0.3 1E-05 51.9 21.5 192 840-1069 43-283 (315)
325 3sre_A PON1, serum paraoxonase 96.3 0.4 1.4E-05 51.2 21.9 188 454-650 52-287 (355)
326 3pbp_A Nucleoporin NUP82; beta 96.3 0.11 3.9E-06 55.7 16.9 160 837-1001 26-207 (452)
327 2xn4_A Kelch-like protein 2; s 96.3 0.4 1.4E-05 50.5 21.9 190 842-1068 61-281 (302)
328 2g8s_A Glucose/sorbosone dehyd 96.3 0.89 3.1E-05 49.0 24.8 232 346-603 19-340 (353)
329 3pbp_A Nucleoporin NUP82; beta 96.2 0.24 8.2E-06 53.2 18.6 156 314-481 31-209 (452)
330 1xi4_A Clathrin heavy chain; a 96.1 0.24 8.1E-06 61.6 20.3 240 349-620 70-335 (1630)
331 4asc_A Kelch repeat and BTB do 96.0 0.35 1.2E-05 51.3 20.0 226 421-661 8-278 (315)
332 3sbq_A Nitrous-oxide reductase 95.9 1.6 5.5E-05 48.5 23.8 73 831-905 322-409 (638)
333 1zgk_A Kelch-like ECH-associat 95.8 0.47 1.6E-05 50.2 19.7 229 417-661 24-288 (308)
334 2woz_A Kelch repeat and BTB do 95.7 0.81 2.8E-05 48.5 21.2 221 429-661 25-288 (318)
335 1zgk_A Kelch-like ECH-associat 95.7 0.69 2.4E-05 48.8 20.3 190 842-1068 70-292 (308)
336 1uuj_A Platelet-activating fac 95.6 0.01 3.4E-07 47.0 3.8 55 5-59 10-66 (88)
337 2woz_A Kelch repeat and BTB do 95.6 0.81 2.8E-05 48.5 20.5 191 839-1068 53-292 (318)
338 3das_A Putative oxidoreductase 95.1 4.2 0.00014 43.1 28.6 236 343-604 30-326 (347)
339 1xi4_A Clathrin heavy chain; a 95.1 1.2 4.1E-05 55.6 21.4 257 367-660 48-331 (1630)
340 3s25_A Hypothetical 7-bladed b 95.0 1.3 4.5E-05 46.3 19.4 199 460-692 22-237 (302)
341 3sbq_A Nitrous-oxide reductase 94.9 3.4 0.00012 45.9 22.3 277 358-649 71-454 (638)
342 2be1_A Serine/threonine-protei 94.4 0.2 6.8E-06 53.0 11.1 213 842-1068 10-239 (339)
343 1tl2_A L10, protein (tachylect 94.4 0.14 4.7E-06 49.6 8.8 110 832-956 41-158 (236)
344 3das_A Putative oxidoreductase 94.0 7.4 0.00025 41.2 26.5 236 450-697 30-327 (347)
345 2uvk_A YJHT; unknown function, 93.8 1.8 6.1E-05 46.7 18.0 140 518-661 168-343 (357)
346 1tl2_A L10, protein (tachylect 93.7 1.1 3.7E-05 43.4 13.5 108 345-481 41-160 (236)
347 2be1_A Serine/threonine-protei 93.6 0.15 5E-06 54.0 8.2 189 467-662 12-233 (339)
348 2uvk_A YJHT; unknown function, 92.9 5.1 0.00018 43.0 19.8 64 841-906 18-97 (357)
349 3s25_A Hypothetical 7-bladed b 92.8 10 0.00036 39.3 25.0 181 349-575 57-257 (302)
350 1cru_A Protein (soluble quinop 92.1 9.1 0.00031 42.6 20.7 107 873-995 27-163 (454)
351 2zwa_A Leucine carboxyl methyl 90.1 13 0.00043 44.2 20.5 196 841-1067 396-639 (695)
352 3qhy_B Beta-lactamase inhibito 89.0 22 0.00076 36.4 21.4 220 346-616 25-246 (282)
353 3qhy_B Beta-lactamase inhibito 88.9 17 0.0006 37.2 17.9 220 408-660 25-246 (282)
354 3q6k_A 43.2 kDa salivary prote 88.4 21 0.00073 38.1 18.4 151 853-1006 124-306 (381)
355 4hvt_A Ritya.17583.B, post-pro 85.7 63 0.0021 38.1 27.4 240 348-615 132-429 (711)
356 2wg3_C Hedgehog-interacting pr 85.4 49 0.0017 36.6 25.6 55 408-462 15-79 (463)
357 4hvt_A Ritya.17583.B, post-pro 82.3 86 0.0029 36.9 25.2 243 409-659 131-429 (711)
358 2zwa_A Leucine carboxyl methyl 80.1 19 0.00064 42.7 15.1 113 549-661 451-578 (695)
359 4gq2_M Nucleoporin NUP120; bet 78.4 19 0.00064 44.4 14.6 82 975-1063 235-319 (950)
360 1cru_A Protein (soluble quinop 76.7 96 0.0033 34.2 32.8 109 495-605 27-163 (454)
361 4gq2_M Nucleoporin NUP120; bet 75.9 74 0.0025 39.1 19.0 39 874-914 237-275 (950)
362 3b7f_A Glycosyl hydrolase, BNR 73.0 1.1E+02 0.0036 33.0 30.9 236 406-654 54-366 (394)
363 1zi0_A DNA gyrase subunit A; b 67.7 1.2E+02 0.004 31.3 28.2 235 416-659 1-276 (307)
364 3q6k_A 43.2 kDa salivary prote 67.3 1.3E+02 0.0046 31.9 23.2 172 368-556 124-341 (381)
365 2zux_A YESW protein; beta-prop 61.4 2.1E+02 0.0071 32.1 23.3 179 449-640 176-424 (591)
366 2d68_A FOP, FGFR1OP; alpha hel 60.8 8.8 0.0003 30.2 3.9 29 7-35 20-48 (82)
367 3b7f_A Glycosyl hydrolase, BNR 59.3 1.9E+02 0.0064 30.9 25.1 216 418-647 22-296 (394)
368 4fhn_B Nucleoporin NUP120; pro 56.6 18 0.0006 45.9 8.1 39 976-1014 238-276 (1139)
369 1sqj_A OXG-RCBH, oligoxylogluc 54.6 3.4E+02 0.012 32.4 25.5 159 344-517 14-190 (789)
370 3l6v_A GYRA, DNA gyrase subuni 54.5 2.2E+02 0.0075 30.2 26.1 148 415-572 4-179 (370)
371 2zux_A YESW protein; beta-prop 52.7 2.9E+02 0.0098 31.0 25.2 312 319-659 155-531 (591)
372 3f7f_A Nucleoporin NUP120; nuc 47.8 41 0.0014 39.0 8.4 32 984-1015 228-259 (729)
373 3uc1_A DNA gyrase subunit A; D 46.3 2.7E+02 0.0092 28.8 23.2 232 419-659 4-278 (327)
374 3zwu_A Alkaline phosphatase PH 44.7 29 0.00098 39.6 6.5 59 933-993 477-548 (592)
375 2wpv_A GET4, UPF0363 protein Y 43.6 70 0.0024 33.0 8.6 23 38-60 17-39 (312)
376 4fhn_B Nucleoporin NUP120; pro 43.4 1.2E+02 0.0041 38.2 12.7 39 874-914 239-277 (1139)
377 3mkr_A Coatomer subunit epsilo 43.0 1.6E+02 0.0055 29.8 11.7 86 5-101 64-157 (291)
378 2k9m_A RNA polymerase sigma fa 41.9 24 0.00082 30.9 4.1 48 2-60 18-66 (130)
379 3f7f_A Nucleoporin NUP120; nuc 41.7 2E+02 0.0067 33.5 12.7 30 884-914 230-259 (729)
380 2lni_A Stress-induced-phosphop 34.6 2E+02 0.0068 23.9 9.5 90 6-101 17-111 (133)
381 3lpz_A GET4 (YOR164C homolog); 34.5 94 0.0032 32.3 7.8 23 38-60 16-41 (336)
382 2wg3_C Hedgehog-interacting pr 34.5 4.9E+02 0.017 28.4 30.2 114 346-473 15-158 (463)
383 4gco_A Protein STI-1; structur 34.3 1.2E+02 0.004 25.9 7.7 100 13-119 21-125 (126)
384 4a9v_A PHOX; hydrolase, beta-p 34.2 1.1E+02 0.0036 34.6 8.7 58 833-891 477-548 (592)
385 3no0_A DNA gyrase subunit A; D 34.2 3.7E+02 0.013 26.9 24.2 161 831-1005 67-245 (276)
386 4h3o_A Lectin; cadmium, plant 34.0 2E+02 0.0068 23.8 11.3 46 935-992 53-98 (105)
387 3zwu_A Alkaline phosphatase PH 32.8 1.3E+02 0.0044 34.3 9.3 64 540-603 477-548 (592)
388 3qou_A Protein YBBN; thioredox 32.5 1.9E+02 0.0067 29.0 10.3 106 9-121 121-231 (287)
389 1wp5_A Topoisomerase IV; broke 32.0 4.4E+02 0.015 27.1 26.7 236 416-659 3-276 (323)
390 4a9v_A PHOX; hydrolase, beta-p 29.7 1.9E+02 0.0064 32.6 9.7 65 540-604 477-549 (592)
391 3mez_B Mannose-specific lectin 29.1 2.5E+02 0.0087 23.5 10.2 26 935-961 59-84 (113)
392 4gcn_A Protein STI-1; structur 28.6 1.4E+02 0.0047 25.4 7.1 101 14-116 17-123 (127)
393 2zuy_A YESX protein; beta-prop 28.5 6.8E+02 0.023 28.2 23.9 57 582-639 365-427 (620)
394 3dzw_A Agglutinin; lectin, man 28.2 2.6E+02 0.0088 23.2 9.4 25 935-960 52-76 (109)
395 2kck_A TPR repeat; tetratricop 27.4 79 0.0027 25.5 5.2 85 14-102 15-105 (112)
396 1oyi_A Double-stranded RNA-bin 27.2 35 0.0012 26.9 2.4 30 6-37 16-45 (82)
397 1kdl_A YOPD protein; yersinia, 26.9 37 0.0013 19.4 1.7 15 4-18 3-17 (26)
398 4asv_A Small glutamine-rich te 26.8 40 0.0014 26.9 2.6 19 1-19 15-33 (92)
399 4gof_A Small glutamine-rich te 25.6 37 0.0013 24.0 2.0 16 4-19 1-16 (52)
400 1elr_A TPR2A-domain of HOP; HO 25.0 2.6E+02 0.009 22.9 8.5 94 9-102 8-107 (131)
401 2jt1_A PEFI protein; solution 24.4 26 0.00087 27.3 1.2 30 8-37 5-39 (77)
402 2vgx_A Chaperone SYCD; alterna 23.2 3.7E+02 0.013 23.4 9.5 86 9-101 25-116 (148)
403 2cn3_A Xyloglucanase, beta-1,4 23.1 9.5E+02 0.032 28.1 41.7 62 452-514 23-91 (737)
404 1wp5_A Topoisomerase IV; broke 23.1 6.3E+02 0.021 25.9 26.5 199 774-1006 3-225 (323)
405 1suu_A DNA gyrase subunit A; t 21.8 6.5E+02 0.022 25.6 28.2 192 416-616 6-231 (312)
406 4ga2_A E3 SUMO-protein ligase 21.7 2.4E+02 0.0081 24.8 7.6 93 21-121 13-111 (150)
407 4g26_A Pentatricopeptide repea 21.5 7.5E+02 0.026 27.3 13.2 82 11-99 111-200 (501)
408 1sqj_A OXG-RCBH, oligoxylogluc 21.5 1.1E+03 0.036 28.0 23.0 165 451-623 14-207 (789)
409 3sz7_A HSC70 cochaperone (SGT) 21.4 2.2E+02 0.0075 25.3 7.5 87 9-101 15-106 (164)
410 2xev_A YBGF; tetratricopeptide 21.1 3.3E+02 0.011 22.4 8.3 91 8-102 5-104 (129)
411 2k9l_A RNA polymerase sigma fa 21.1 51 0.0017 25.5 2.3 36 2-37 27-63 (76)
412 2xcb_A PCRH, regulatory protei 20.6 4E+02 0.014 22.7 9.3 86 9-100 22-112 (142)
413 2pl2_A Hypothetical conserved 20.4 3.8E+02 0.013 25.2 9.3 108 7-119 7-128 (217)
414 3hym_B Cell division cycle pro 20.4 4.4E+02 0.015 26.4 10.6 90 7-102 91-187 (330)
415 2qfc_A PLCR protein; TPR, HTH, 20.1 3.8E+02 0.013 26.7 9.8 94 7-101 77-182 (293)
416 1elw_A TPR1-domain of HOP; HOP 20.1 3.3E+02 0.011 21.6 9.9 90 7-102 6-100 (118)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-67 Score=636.17 Aligned_cols=565 Identities=20% Similarity=0.337 Sum_probs=485.0
Q ss_pred Eee-cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 339 VSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 339 ~~l-~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
+.| +|++.|+|++|||||+ +||+|+.|++|+|||. +++.+.. +.+|.+.|.+++|+||
T Consensus 10 ~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fspd 68 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSPD 68 (577)
T ss_dssp EEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECTT
T ss_pred eEECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECCC
Confidence 345 4999999999999999 6999999999999995 5666543 7889999999999999
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCe
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPV 497 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v 497 (1096)
+++||+++.|++|+|||.. ++.+. .+.+|.+.|.+++|+|+++ +|++++.|+.+++|+..........+|...+
T Consensus 69 g~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v 142 (577)
T 2ymu_A 69 GQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSSSV 142 (577)
T ss_dssp SSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTCCEEEEECCCSSCE
T ss_pred CCEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccccceeeeccCCCCce
Confidence 9999999999999999964 45444 6889999999999999999 8999999999999997777888889999999
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
..+.+.+ ++..+++++.++.+++|+.. .........+...+.++.++|+++++++++. ++.|++||. +++.+
T Consensus 143 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~~~ 214 (577)
T 2ymu_A 143 WGVAFSP--DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQLL 214 (577)
T ss_dssp EEEEECT--TSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSCEE
T ss_pred eeeeeec--CCccceecccccceeccccc-eeeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCcEE
Confidence 9999976 66789999999999999854 4455566778889999999999999999987 999999995 57788
Q ss_pred EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEE
Q 001343 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1096)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 657 (1096)
..+.+|.. .+.+++|+|++.++++++.|+.|++||. +++.+..+..+.. .|.+++|+|+++.+++++.|+.|++|+
T Consensus 215 ~~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~--~v~~v~~~~d~~~l~~~~~d~~i~~w~ 290 (577)
T 2ymu_A 215 QTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS--SVNGVAFRPDGQTIASASDDKTVKLWN 290 (577)
T ss_dssp EEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEecCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCC--CEEEEEEcCCCCEEEEEeCCCEEEEEe
Confidence 88998887 8999999999999999999999999996 4667777776654 899999999999999999999999999
Q ss_pred cCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCC
Q 001343 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDK 737 (1096)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~ 737 (1096)
... +....+.++. ..+.+++|+|+++.+ ++++.|+.
T Consensus 291 ~~~--~~~~~~~~h~-----~~v~~~~~~~~~~~l-------------------------------------~t~~~d~~ 326 (577)
T 2ymu_A 291 RNG--QLLQTLTGHS-----SSVWGVAFSPDGQTI-------------------------------------ASASDDKT 326 (577)
T ss_dssp TTS--CEEEEECCCS-----SCEEEEEECTTSSEE-------------------------------------EEEETTSC
T ss_pred CCC--cEEEEEecCC-----CCeEEEEECCCCCEE-------------------------------------EEEeCCCe
Confidence 743 3455555553 346778887766655 77788899
Q ss_pred ccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCc
Q 001343 738 PKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSS 817 (1096)
Q Consensus 738 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~ 817 (1096)
|++|+.. ..... .+.+ |...+.+++|+|+++.+++++.++.+++|+...
T Consensus 327 i~~w~~~----~~~~~--~~~~---~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~---------------------- 375 (577)
T 2ymu_A 327 VKLWNRN----GQHLQ--TLTG---HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---------------------- 375 (577)
T ss_dssp EEEEETT----SCEEE--EECC---CSSCEEEEEECTTSSEEEEEETTSEEEEEETTC----------------------
T ss_pred EEEEeCC----CCeeE--EEeC---CCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC----------------------
Confidence 9999975 23332 4556 899999999999999999999999999998521
Q ss_pred cccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCe
Q 001343 818 GLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDST 896 (1096)
Q Consensus 818 ~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~ 896 (1096)
+.+. .+.+ |...|++++|+|||++|++++ |+.|++||. +++.+..+.+|...|++++|+| |+++|++++.|++
T Consensus 376 -~~~~-~~~~--~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~ 449 (577)
T 2ymu_A 376 -QLLQ-TLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKT 449 (577)
T ss_dssp -CEEE-EEEC--CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSE
T ss_pred -CEEE-EecC--CCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCE
Confidence 1111 2444 889999999999999999998 799999995 7788999999999999999999 8999999999999
Q ss_pred EEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCC
Q 001343 897 IHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALS 975 (1096)
Q Consensus 897 i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~ 975 (1096)
|++||+... .+..+.+|.. .|.+++|+||+++|++ +.|+.|++||. ++++++.+..| .
T Consensus 450 v~~w~~~~~----------------~~~~~~~~~~-~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h---~ 508 (577)
T 2ymu_A 450 VKLWNRNGQ----------------LLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH---S 508 (577)
T ss_dssp EEEEETTSC----------------EEEEEECCSS-CEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECC---S
T ss_pred EEEEECCCC----------------EEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCC---C
Confidence 999997543 3455667776 9999999999999999 78999999996 57777877765 8
Q ss_pred CCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEE
Q 001343 976 APISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVK 1055 (1096)
Q Consensus 976 ~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~ 1055 (1096)
..|.+++|+|||++||+++.||.|++||. +++....+. + |...|+ +++|+| |+++|+|++.|++|+
T Consensus 509 ~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-------~---h~~~v~--~~~fs~-dg~~l~s~~~D~~i~ 574 (577)
T 2ymu_A 509 SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-------G---HSSSVW--GVAFSP-DGQTIASASSDKTVK 574 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-------C---CSSCEE--EEEECT-TSSCEEEEETTSCEE
T ss_pred CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-------C---CCCCEE--EEEEcC-CCCEEEEEeCCCEEE
Confidence 99999999999999999999999999996 456544433 3 899999 599999 999999999999999
Q ss_pred EEc
Q 001343 1056 VME 1058 (1096)
Q Consensus 1056 vW~ 1058 (1096)
+||
T Consensus 575 ~Wd 577 (577)
T 2ymu_A 575 LWN 577 (577)
T ss_dssp EEC
T ss_pred EeC
Confidence 997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.1e-66 Score=622.16 Aligned_cols=577 Identities=14% Similarity=0.197 Sum_probs=470.2
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
+.+.+.+++|+|+|+ +||+++ ++.|+||++.+++... .+.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCe-------------------EecCCCCceEEEEECCCCcEEE
Confidence 567889999999999 688886 6799999998776554 2789999999999999999999
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC----CcEEEEEcCCceEEEeeCCCCCeE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGRKLFNFEGHEAPVY 498 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~~~~~v~ 498 (1096)
+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+|+++ .|++++.+ +.|++|| .++.+..+.+|...|+
T Consensus 76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd-~~~~~~~l~gh~~~v~ 151 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD-TGTSNGNLTGQARAMN 151 (611)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT-TCCBCBCCCCCSSCEE
T ss_pred EEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee-CCCCcceecCCCCCce
Confidence 99999999999997654432 225778999999999999999 78888765 3677777 5667778999999999
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeE
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1096)
+++|+|.+ ...|++|+.|++|++||..+.+....+..|...|.+++|+|+|++|++++. |+.|++||..+++.+.
T Consensus 152 ~v~f~p~~-~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 152 SVDFKPSR-PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTG 226 (611)
T ss_dssp EEEECSSS-SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEE
T ss_pred EEEECCCC-CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcEee
Confidence 99998843 136999999999999999888888889999999999999999999999997 9999999999999988
Q ss_pred EEc-------CcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCC-CCCccEEEEeCCCCEEEEEECC
Q 001343 579 TYA-------GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-LPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 579 ~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
.+. +|.. .|.+++|+|++++|++++.|++|++||+.+++.+..+..... ...+..+.| ++..+++++.|
T Consensus 227 ~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d 303 (611)
T 1nr0_A 227 VFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISAN 303 (611)
T ss_dssp ECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETT
T ss_pred eeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCC
Confidence 884 5766 899999999999999999999999999999999888865421 113345555 77899999999
Q ss_pred CcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCcc
Q 001343 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT 730 (1096)
Q Consensus 651 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 730 (1096)
+.+++|+...+ .....+.+|. ..|.+++|+|+|+++ +
T Consensus 304 ~~i~~~~~~~~-~~~~~~~gh~-----~~v~~l~~spdg~~l-------------------------------------~ 340 (611)
T 1nr0_A 304 GFINFVNPELG-SIDQVRYGHN-----KAITALSSSADGKTL-------------------------------------F 340 (611)
T ss_dssp CCEEEEETTTT-EEEEEECCCS-----SCEEEEEECTTSSEE-------------------------------------E
T ss_pred CcEEEEeCCCC-CcceEEcCCC-----CCEEEEEEeCCCCEE-------------------------------------E
Confidence 99999999877 4555555653 457888888776665 7
Q ss_pred ccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCc
Q 001343 731 VDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVP 810 (1096)
Q Consensus 731 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i 810 (1096)
+++.|++|++|++. .+.+......+ |...|.+++|++++. +++++.|+.+++|++........
T Consensus 341 s~s~D~~v~~Wd~~----~~~~~~~~~~~---h~~~v~~~~~s~~~~-l~s~s~d~~v~~w~~~~~~~~~~--------- 403 (611)
T 1nr0_A 341 SADAEGHINSWDIS----TGISNRVFPDV---HATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSS--------- 403 (611)
T ss_dssp EEETTSCEEEEETT----TCCEEECSSCS---CSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTT---------
T ss_pred EEeCCCcEEEEECC----CCceeeecccC---CcceEEEEEECCCCc-EEEEEcCCceEEeecCCcccccc---------
Confidence 88888999999987 34444322244 899999999998774 88999999999999754221000
Q ss_pred cccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEE
Q 001343 811 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890 (1096)
Q Consensus 811 ~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s 890 (1096)
...... ......+++|+|+|+.++++.++.+++|+ .++ +..+. |...+.+++|+| |+++|++
T Consensus 404 --------~~~~~~-----~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~las 465 (611)
T 1nr0_A 404 --------KAVANK-----LSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAV 465 (611)
T ss_dssp --------SCCEEE-----CSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEE
T ss_pred --------ceeeee-----cCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEE
Confidence 000001 23346789999999888888889999998 444 55554 788899999999 9999999
Q ss_pred eeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEccc-ceeccc-
Q 001343 891 GTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASK-MERIRQ- 967 (1096)
Q Consensus 891 ~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~-~~~~~~- 967 (1096)
|+.|++|++||+.++.. ..+.. .+|.. .|.+++|||||++|++ +.|++|++|++.+ ++++..
T Consensus 466 gs~D~~v~lwd~~~~~~-------------~~~~~-~~h~~-~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~ 530 (611)
T 1nr0_A 466 GGQDSKVHVYKLSGASV-------------SEVKT-IVHPA-EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN 530 (611)
T ss_dssp EETTSEEEEEEEETTEE-------------EEEEE-EECSS-CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC
T ss_pred eCCCCeEEEEEccCCce-------------eeeec-cCCCC-ceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeee
Confidence 99999999999987651 11222 45665 8999999999999999 8899999999998 676554
Q ss_pred cccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeE-EEccccccCCCccCC-CccccceEEEecCCCCceE
Q 001343 968 WTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRC-YIAPSTYLSPSVLNG-SQTVYPLVVAAHPLEPNQF 1045 (1096)
Q Consensus 968 ~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~h-~~~v~s~~l~~s~~d~~~l 1045 (1096)
....| ...|.+++|+|||++||+|+.|++|++|+++++.... .. ..+ | ...|. +++|+| |+. |
T Consensus 531 ~~~~H--~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~------~~~---h~~~~v~--~v~fs~-d~~-l 595 (611)
T 1nr0_A 531 SWTFH--TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII------KGA---HAMSSVN--SVIWLN-ETT-I 595 (611)
T ss_dssp CCCCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE------TTS---STTSCEE--EEEEEE-TTE-E
T ss_pred eeeec--ccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchh------hcc---CcccCee--EEEEcC-CCE-E
Confidence 33334 8999999999999999999999999999999876221 11 113 7 78899 599999 887 9
Q ss_pred EEEeeCCcEEEEccC
Q 001343 1046 AIGLTDGSVKVMEPS 1060 (1096)
Q Consensus 1046 ~s~~~dg~i~vW~v~ 1060 (1096)
++|+.|++|++|++.
T Consensus 596 ~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 596 VSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEETTSCEEEEECC
T ss_pred EEecCCCCEEEEecc
Confidence 999999999999973
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7e-62 Score=586.71 Aligned_cols=555 Identities=15% Similarity=0.189 Sum_probs=442.9
Q ss_pred CCCceeecCCCce-eeecCCCCcceEEee-cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeeccc
Q 001343 314 SAEEVTYSSSRHQ-TWSLDDLPRTVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMA 391 (1096)
Q Consensus 314 ~~~~v~~~~~~~~-~~~~~~~~~~~~~~l-~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~ 391 (1096)
+...+++...... +|++.+ +....++ +|.+.|++++|||+|+ +||+|+.||+|+|||+.+++....
T Consensus 29 dg~~l~~~~~~~v~l~~~~~--~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~--------- 96 (611)
T 1nr0_A 29 AGDKIQYCNGTSVYTVPVGS--LTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK--------- 96 (611)
T ss_dssp TSSEEEEEETTEEEEEETTC--SSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE---------
T ss_pred CCCEEEeCCCCEEEEecCCC--cccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceee---------
Confidence 3444555543322 888764 3444555 5999999999999999 799999999999999976553321
Q ss_pred ccCccccccccccCCCCEEEEEEcCCCCEEEEEECC----CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEE
Q 001343 392 ACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467 (1096)
Q Consensus 392 ~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~ 467 (1096)
..+.+|.+.|.+++|+|||++|++++.+ +.|++|| .++... .+.+|.+.|++++|+|++.. .
T Consensus 97 --------~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p~~~~-~ 162 (611)
T 1nr0_A 97 --------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKPSRPF-R 162 (611)
T ss_dssp --------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECSSSSC-E
T ss_pred --------EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEECCCCCe-E
Confidence 1267799999999999999999998865 3677777 455444 57899999999999999874 6
Q ss_pred EEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe-------CCCC
Q 001343 468 VVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------APGH 539 (1096)
Q Consensus 468 l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~ 539 (1096)
|++|+.|++|++|| ..++++..+.+|...|.+++|+| ++.+|++++.||+|++||+.+++....+. .|..
T Consensus 163 l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~ 240 (611)
T 1nr0_A 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG 240 (611)
T ss_dssp EEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS
T ss_pred EEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCC
Confidence 99999999999999 88889999999999999999977 67899999999999999999888877763 6888
Q ss_pred cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCcc--ceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC
Q 001343 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK--SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1096)
.|.+++|+|++++|++++. |+.|++||+.+++.+.++..+... ....+.| ++..+++++.|+.+++|+...+
T Consensus 241 ~V~~v~~spdg~~l~s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~ 314 (611)
T 1nr0_A 241 SVFGLTWSPDGTKIASASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELG 314 (611)
T ss_dssp CEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTT
T ss_pred CEEEEEECCCCCEEEEEeC----CCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCC
Confidence 9999999999999999997 999999999999999888754321 3344555 6788999999999999999999
Q ss_pred eEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccc-cCCCcccccCcceeEEeecCCCeEEecC
Q 001343 618 NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAV-ENPPFEALRTPIESVALKVSASSAVSSG 696 (1096)
Q Consensus 618 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~lv~~~ 696 (1096)
+....+.+|.. .|.+++|+|++++|++++.|+.|++||+.++. ....+ .. +...+.+++|++++.
T Consensus 315 ~~~~~~~gh~~--~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~-~~~~~~~~-----h~~~v~~~~~s~~~~------ 380 (611)
T 1nr0_A 315 SIDQVRYGHNK--AITALSSSADGKTLFSADAEGHINSWDISTGI-SNRVFPDV-----HATMITGIKTTSKGD------ 380 (611)
T ss_dssp EEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEECSSCS-----CSSCEEEEEECTTSC------
T ss_pred CcceEEcCCCC--CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-eeeecccC-----CcceEEEEEECCCCc------
Confidence 88877777655 89999999999999999999999999998873 33322 22 234577788875543
Q ss_pred CCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCC-ceEEEEcCCCCCCcccEEEEEEecC
Q 001343 697 TPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSG-QCRLVTMPESTDTSSKVVRLLYTNS 775 (1096)
Q Consensus 697 s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~s~~ 775 (1096)
+++++.|+++++|+........ ...... ....+..++|+|+
T Consensus 381 --------------------------------l~s~s~d~~v~~w~~~~~~~~~~~~~~~~------~~~~~~~~~~s~d 422 (611)
T 1nr0_A 381 --------------------------------LFTVSWDDHLKVVPAGGSGVDSSKAVANK------LSSQPLGLAVSAD 422 (611)
T ss_dssp --------------------------------EEEEETTTEEEEECSSSSSSCTTSCCEEE------CSSCEEEEEECTT
T ss_pred --------------------------------EEEEEcCCceEEeecCCccccccceeeee------cCCCCcEEEEeCC
Confidence 3577778999999976311110 111122 2335678999999
Q ss_pred CceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeE
Q 001343 776 AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKI 854 (1096)
Q Consensus 776 ~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v 854 (1096)
+..++++ .++.+++|+-. + +. .+. |...+.+++|+|||++||+|+ |++|
T Consensus 423 g~~~~~~-~~~~v~~~~~~------------------------~-~~-~~~---~~~~v~~va~spdg~~lasgs~D~~v 472 (611)
T 1nr0_A 423 GDIAVAA-CYKHIAIYSHG------------------------K-LT-EVP---ISYNSSCVALSNDKQFVAVGGQDSKV 472 (611)
T ss_dssp SSCEEEE-ESSEEEEEETT------------------------E-EE-EEE---CSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred CcEEEEE-eCceEEEEeCC------------------------c-ee-eee---cCCCceEEEEeCCCCEEEEeCCCCeE
Confidence 9866666 56788888721 1 00 111 667899999999999999999 7999
Q ss_pred EEEEcccceE--EEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeecc-ceeeeeeccccccccceeeec--CCCC
Q 001343 855 SLFNMMTFKV--MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-DELCVWSIDTWEKRKSVTIHI--PAGK 929 (1096)
Q Consensus 855 ~iwd~~~~~~--~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~-~~~~~w~~~~~~~~~~~~~~~--~~~~ 929 (1096)
++||+.++.. +.. .+|...|++++|+| |+++|++++.|++|++|++.+ ++ .+.. ..+|
T Consensus 473 ~lwd~~~~~~~~~~~-~~h~~~v~~v~fsp-dg~~las~s~d~~v~~w~~~~~~~---------------~~~~~~~~~H 535 (611)
T 1nr0_A 473 HVYKLSGASVSEVKT-IVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFE---------------LAHTNSWTFH 535 (611)
T ss_dssp EEEEEETTEEEEEEE-EECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTE---------------ESCCCCCCCC
T ss_pred EEEEccCCceeeeec-cCCCCceEEEEECC-CCCEEEEEcCCCCEEEEEcCCCCc---------------eeeeeeeeec
Confidence 9999977654 344 67999999999999 999999999999999999987 44 2222 3347
Q ss_pred CCCCCceEEEecCCcEEEE-EecceEEEEEccccee-c-cccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecC
Q 001343 930 TPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMER-I-RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1005 (1096)
Q Consensus 930 ~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~-~-~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~ 1005 (1096)
.. .|.+++|+|||++||+ +.|++|++||+.++.. + ..+..|. ...|.+++|+||++ |++++.|++|++|++.
T Consensus 536 ~~-~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~--~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 536 TA-KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA--MSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp SS-CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSST--TSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred cc-ceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCc--ccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 76 9999999999999999 7899999999988753 3 3333332 68999999999999 9999999999999973
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.3e-61 Score=584.56 Aligned_cols=533 Identities=20% Similarity=0.349 Sum_probs=457.8
Q ss_pred eeecCCCCcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccC
Q 001343 327 TWSLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (1096)
+|+. .+++++++. |.+.|++++|+|||+ +||+|+.|++|+|||. +++.+.. +.+|
T Consensus 42 iWd~---~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~-~~~~~~~-------------------~~~~ 97 (577)
T 2ymu_A 42 LWNR---NGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGH 97 (577)
T ss_dssp EECT---TSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEET-TSCEEEE-------------------ECCC
T ss_pred EEEC---CCCEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EECC
Confidence 7874 466777776 999999999999999 7999999999999996 4555532 7789
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCc
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 485 (1096)
...|.+++|+||+++|++++.|+.+++|+....... ...+|...|.++.|+|++. .+++++.++.+++|+....
T Consensus 98 ~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 171 (577)
T 2ymu_A 98 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ----TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNRNGQ 171 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE----EECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECTTSC
T ss_pred CCCEEEEEECCCCCEEEEEcCCCceeecccccceee----eccCCCCceeeeeeecCCc--cceecccccceecccccee
Confidence 999999999999999999999999999997654322 4678999999999999999 7999999999999997778
Q ss_pred eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCe
Q 001343 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1096)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~ 565 (1096)
.......|...|.++.+.+ ++.++++++.||.|++||. +.+....+..|...|.+++|+|+++++++++. ++.
T Consensus 172 ~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~----d~~ 244 (577)
T 2ymu_A 172 LLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD----DKT 244 (577)
T ss_dssp EEEEEECCSSCEEEEEECT--TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSC
T ss_pred eeeeccCCCcceeeeeecC--CCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCEEEEEeC----CCE
Confidence 8888889999999999976 6689999999999999995 45667788889999999999999999999987 999
Q ss_pred EEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEE
Q 001343 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1096)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 645 (1096)
|++||. +++.+..+.+|.. .+.+++|+|+++.+++++.|+.|++|+. +++.+..+..|.. .|.+++|+|++..++
T Consensus 245 i~~w~~-~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~--~v~~~~~~~~~~~l~ 319 (577)
T 2ymu_A 245 VKLWNR-NGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS--SVWGVAFSPDGQTIA 319 (577)
T ss_dssp EEEECT-TSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSS--CEEEEEECTTSSEEE
T ss_pred EEEEeC-CCCEEEEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCC--CeEEEEECCCCCEEE
Confidence 999995 5678888888877 8999999999999999999999999996 4567777776654 899999999999999
Q ss_pred EEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCC
Q 001343 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM 725 (1096)
Q Consensus 646 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d 725 (1096)
+++.|+.|++||.... .+..+.++ ...+.+++|+|+|+.+
T Consensus 320 t~~~d~~i~~w~~~~~--~~~~~~~~-----~~~v~~~~~s~~g~~l--------------------------------- 359 (577)
T 2ymu_A 320 SASDDKTVKLWNRNGQ--HLQTLTGH-----SSSVWGVAFSPDGQTI--------------------------------- 359 (577)
T ss_dssp EEETTSCEEEEETTSC--EEEEECCC-----SSCEEEEEECTTSSEE---------------------------------
T ss_pred EEeCCCeEEEEeCCCC--eeEEEeCC-----CCCEEEEEECCCCCEE---------------------------------
Confidence 9999999999998654 33444444 3346778887776655
Q ss_pred CCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCcee
Q 001343 726 DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKAT 805 (1096)
Q Consensus 726 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~ 805 (1096)
++++.|+.+++|+.. +... ..+.+ |...|.+++|+|+++.|++++.|+.|++|+...
T Consensus 360 ----~~~~~dg~v~~~~~~-----~~~~-~~~~~---~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~---------- 416 (577)
T 2ymu_A 360 ----ASASDDKTVKLWNRN-----GQLL-QTLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---------- 416 (577)
T ss_dssp ----EEEETTSEEEEEETT-----CCEE-EEEEC---CSSCEEEEEECTTSSCEEEEETTSEEEEECTTC----------
T ss_pred ----EEEeCCCEEEEEcCC-----CCEE-EEecC---CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC----------
Confidence 677778999999964 2322 24455 899999999999999999999999999998521
Q ss_pred eecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCC
Q 001343 806 ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQD 884 (1096)
Q Consensus 806 ~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d 884 (1096)
+.+. .+.+ |...|++++|+||+++|++++ |+.|++||. +++.+..+.+|...|++++|+| +
T Consensus 417 -------------~~~~-~~~~--~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~sp-d 478 (577)
T 2ymu_A 417 -------------QLLQ-TLTG--HSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-D 478 (577)
T ss_dssp -------------CEEE-EEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-T
T ss_pred -------------CEEE-EecC--CCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcC-C
Confidence 1111 2444 899999999999999999998 799999996 6788899999999999999999 9
Q ss_pred CcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccce
Q 001343 885 NNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKME 963 (1096)
Q Consensus 885 ~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~ 963 (1096)
+++|++++.|++|++||.. ++ +++.+.+|.. .|++++|+|||++|++ +.|+.|++||. +++
T Consensus 479 ~~~las~~~d~~i~iw~~~-~~---------------~~~~~~~h~~-~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~ 540 (577)
T 2ymu_A 479 GQTIASASDDKTVKLWNRN-GQ---------------LLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ 540 (577)
T ss_dssp SCEEEEEETTSEEEEEETT-SC---------------EEEEEECCSS-CEEEEEECTTSSCEEEEETTSEEEEECT-TSC
T ss_pred CCEEEEEeCCCEEEEEcCC-CC---------------EEEEEeCCCC-CEEEEEEcCCCCEEEEEECcCEEEEEeC-CCC
Confidence 9999999999999999954 44 4566778876 9999999999999999 78999999996 577
Q ss_pred eccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEe
Q 001343 964 RIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1003 (1096)
Q Consensus 964 ~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd 1003 (1096)
++..+.+| .+.|.+++|+|||++|++++.|++|++||
T Consensus 541 ~~~~~~~h---~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 541 LLQTLTGH---SSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEEECC---SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEcCC---CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 77777765 89999999999999999999999999997
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.4e-63 Score=649.85 Aligned_cols=615 Identities=13% Similarity=0.174 Sum_probs=504.9
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE
Q 001343 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1096)
Q Consensus 341 l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 420 (1096)
.+|.+.|++++|+|+|+ ++|+|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|+|++
T Consensus 612 ~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~~ 671 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDDSY 671 (1249)
T ss_dssp CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTSSE
T ss_pred ecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCCCE
Confidence 45999999999999999 799999999999999999987754 7789999999999999999
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEE
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~ 499 (1096)
||+|+.||.|++||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++|| .+++++..+.+|...|++
T Consensus 672 l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~ 748 (1249)
T 3sfz_A 672 IATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH 748 (1249)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEE
T ss_pred EEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEE
Confidence 9999999999999999988766 578999999999999965444899999999999999 899999999999999999
Q ss_pred EEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC-------------CCcEEEEEEcCCCCEEEEEeeccCCCCeE
Q 001343 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------------GHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1096)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~i~~l~~s~~~~~l~~~~~~~~~~~~i 566 (1096)
++|+| ++.++++++.||+|++||+.+......+... ...+.+++|+|+|+.+++++ ++.+
T Consensus 749 ~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~~v 821 (1249)
T 3sfz_A 749 CRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KNKV 821 (1249)
T ss_dssp EEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TTEE
T ss_pred EEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----CCcE
Confidence 99987 6689999999999999999987766554322 22688999999999999987 7899
Q ss_pred EEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEE
Q 001343 567 VEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 567 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 646 (1096)
.+||..++.....+...+...+.+++|+|++..+++++.||.|++|++.++..+..+..|.. .|.+++|+|++..+++
T Consensus 822 ~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~s 899 (1249)
T 3sfz_A 822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS--WVHGVMFSPDGSSFLT 899 (1249)
T ss_dssp EEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEE
T ss_pred EEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc--ceEEEEECCCCCEEEE
Confidence 99999999988888744444899999999999999999999999999999999998887765 8999999999999999
Q ss_pred EECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeE-eccCCCc-CCCcccCCCCccCC
Q 001343 647 TTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKV-ERSSPVR-PSPIINGVDPTSRS 724 (1096)
Q Consensus 647 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~-~~~~~~~-~~~~~~~~~~~~s~ 724 (1096)
++.||.|++|++.+.... .... ......+.+.+++..+++......... ....... ...........++|
T Consensus 900 ~s~dg~v~vw~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 971 (1249)
T 3sfz_A 900 ASDDQTIRVWETKKVCKN-SAIV-------LKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP 971 (1249)
T ss_dssp EETTSCEEEEEHHHHHSC-CSSS-------EEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT
T ss_pred EeCCCeEEEEEcccccee-eeec-------ccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC
Confidence 999999999998653111 1000 001112344444444333222211111 1100000 00000012346789
Q ss_pred CCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCce
Q 001343 725 MDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKA 804 (1096)
Q Consensus 725 d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~ 804 (1096)
+++++++++.+|.|++|++. .+.... .+.+ |...|.+++|+|+++.+++++.||.|++|++..
T Consensus 972 ~g~~l~~g~~~g~i~i~d~~----~~~~~~-~~~~---h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~--------- 1034 (1249)
T 3sfz_A 972 HLEYVAFGDEDGAIKIIELP----NNRVFS-SGVG---HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT--------- 1034 (1249)
T ss_dssp TSSEEEEEETTSCCEEEETT----TTSCEE-ECCC---CSSCCCCEEECSSSSCEEEECSSSBEEEEETTT---------
T ss_pred CCCEEEEEcCCCCEEEEEcC----CCceee-eccc---CCCceEEEEECCCCCEEEEEcCCCEEEEEECCC---------
Confidence 99999999999999999987 333333 5566 999999999999999999999999999999743
Q ss_pred eeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeecCCCCCeeEEEEecCC
Q 001343 805 TASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQD 884 (1096)
Q Consensus 805 ~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d 884 (1096)
+.... +.+ |...|.+++|+|++++++.+.||.|++||+.+++.+..+.+|.+.|++++|+| +
T Consensus 1035 -------------~~~~~--~~~--~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~-d 1096 (1249)
T 3sfz_A 1035 -------------GDYVF--LQA--HQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-D 1096 (1249)
T ss_dssp -------------TEEEC--CBC--CSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECS-S
T ss_pred -------------CceEE--Eec--CCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECC-C
Confidence 22222 223 88999999999998876666699999999999999999999999999999999 8
Q ss_pred CcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccce
Q 001343 885 NNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKME 963 (1096)
Q Consensus 885 ~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~ 963 (1096)
++++++++.||+|++||+.+++ ++..+.+|.. .|++++|+|||++|++ +.|+.|++||+.+++
T Consensus 1097 ~~~l~s~s~d~~v~iwd~~~~~---------------~~~~l~~h~~-~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~ 1160 (1249)
T 3sfz_A 1097 ATKFSSTSADKTAKIWSFDLLS---------------PLHELKGHNG-CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1160 (1249)
T ss_dssp SSSCEEECCSSCCCEECSSSSS---------------CSBCCCCCSS-CEEEEEECSSSSEEEEEETTSCCCEEESSSSC
T ss_pred CCEEEEEcCCCcEEEEECCCcc---------------eeeeeccCCC-cEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 9999999999999999999877 5677888887 9999999999999999 789999999999999
Q ss_pred ecccccc------CCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEe
Q 001343 964 RIRQWTP------QDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAA 1037 (1096)
Q Consensus 964 ~~~~~~~------~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~ 1037 (1096)
++..+.+ ...|.+.|.+++|+|||++|++++ |.|++||+.+++....+. + |...|. +++|
T Consensus 1161 ~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~-------~---~~~~i~--~~~~ 1226 (1249)
T 3sfz_A 1161 LLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFY-------T---NGTNLK--KIHV 1226 (1249)
T ss_dssp CCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCC-------C---SSCCCC--CCEE
T ss_pred eEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeee-------c---cCCccc--EEEE
Confidence 8776511 011388999999999999999875 899999999998654332 2 677888 4899
Q ss_pred cCCCCceEEEEeeCCcEEEEccCC
Q 001343 1038 HPLEPNQFAIGLTDGSVKVMEPSE 1061 (1096)
Q Consensus 1038 s~~d~~~l~s~~~dg~i~vW~v~~ 1061 (1096)
+| |+++|++++.||.|++|++.+
T Consensus 1227 s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1227 SP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp CS-SSCCEEEECTTCCEEEECCCC
T ss_pred CC-CCCEEEEecCCcEEEEEeecC
Confidence 99 999999999999999999853
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.8e-59 Score=571.08 Aligned_cols=558 Identities=12% Similarity=0.182 Sum_probs=477.4
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCC----CeeecccceeecccccCccccccccccCCCC-EEEEEEcC
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR----DRLVSKPFKIWDMAACSLPFQASIFKDVPIS-VSRVAWSP 416 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp 416 (1096)
.|.+.|++++|+|+|+ +||+|+ ++.|+|||+.++ +... .+.+|... |.+++|+|
T Consensus 16 ~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred CccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECc
Confidence 4788999999999999 688886 899999999987 5443 27889999 99999999
Q ss_pred --CCCEEEEEECCCeEEEEEccCCC-----ccccceeecccccCEEEEEEecCCCcEEEEEEeCC----CcEEEEEcCCc
Q 001343 417 --DGNYVGVAFTKHLIQLYSYAGSN-----DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGR 485 (1096)
Q Consensus 417 --d~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d----~~i~iwd~~~~ 485 (1096)
++++||+|+.||.|++||+.+++ .......+.+|...|.+++|+|+++ +|++++.+ +.|++|| .++
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d-~~~ 151 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD-SGN 151 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT-TCC
T ss_pred CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE-CCC
Confidence 99999999999999999997651 1122235778999999999999999 88999887 6888888 677
Q ss_pred eEEEeeCCCCCeEEEEeeecCCCc-EEEEEECCCeEEEEEcCCCCeeeEEeCCCC---cEEEEEEcCC-CCEEEEEeecc
Q 001343 486 KLFNFEGHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRVDYDAPGH---WCTTMLYSAD-GSRLFSCGTSK 560 (1096)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~l~~s~~-~~~l~~~~~~~ 560 (1096)
.+..+.+|...|.+++|+|. +. .+++++.||.|++||+.+.+....+..|.. .|.+++|+|+ ++++++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQS--RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSS--SSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET--
T ss_pred cceeeecCCccEEEEEECCC--CCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC--
Confidence 88999999999999999874 44 899999999999999999988889988888 9999999999 999999987
Q ss_pred CCCCeEEEEeCCCCeeeEEE-c---CcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCC--CCCccE
Q 001343 561 DGDSFLVEWNESEGTIKRTY-A---GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG--LPNLPR 634 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~-~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~ 634 (1096)
++.|++||+.+++.+..+ . .|.. .+.+++|+ ++.++++++.|+.|++||+.+++.+..+..+.. ...+.+
T Consensus 228 --dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 303 (615)
T 1pgu_A 228 --DRKISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 303 (615)
T ss_dssp --TCCEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEE
T ss_pred --CCeEEEEECCCCCEeEEecccccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeE
Confidence 999999999999999998 5 6665 89999999 999999999999999999999999988886631 125677
Q ss_pred EEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCc
Q 001343 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPI 714 (1096)
Q Consensus 635 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~ 714 (1096)
+.|. ++.++++++.|+.|++||+.++ +....+.++. ..|.+++| |+
T Consensus 304 ~~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~-----~~v~~~~~-~~-------------------------- 349 (615)
T 1pgu_A 304 VVAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGHN-----KGITALTV-NP-------------------------- 349 (615)
T ss_dssp EEEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCCS-----SCEEEEET-TT--------------------------
T ss_pred EEeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEeCCC-----CCEEEEEe-cC--------------------------
Confidence 8886 8899999999999999999876 5555665553 34666666 54
Q ss_pred ccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeecc
Q 001343 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWH 794 (1096)
Q Consensus 715 ~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~ 794 (1096)
+++++.||.|++|++. .+. .+ |...|.+++| +++..+++++.|+.+++|++.
T Consensus 350 --------------l~~~~~dg~i~~w~~~---------~~~-~~---~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~ 401 (615)
T 1pgu_A 350 --------------LISGSYDGRIMEWSSS---------SMH-QD---HSNLIVSLDN-SKAQEYSSISWDDTLKVNGIT 401 (615)
T ss_dssp --------------TEEEETTSCEEETTTT---------EEE-CC---CCSCEEEEEC-CSTTCCEEEETTTEEEETTEE
T ss_pred --------------cEEECCCCeEEEEEch---------hhc-Cc---ccCceEEEEE-CCCcEEEEEeCCCCEEEEEcc
Confidence 4678888999999975 223 55 9999999999 667779999999999999863
Q ss_pred CCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeecCCCCC
Q 001343 795 RNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPA 874 (1096)
Q Consensus 795 ~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~ 874 (1096)
... ....+.+++++|++++++++.++.+.+|++.+++.+..+. |...
T Consensus 402 ~~~--------------------------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 448 (615)
T 1pgu_A 402 KHE--------------------------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSP 448 (615)
T ss_dssp EEE--------------------------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC
T ss_pred cCc--------------------------------ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCC
Confidence 311 1125778999999999999988999999999999988886 8889
Q ss_pred eeEEEEecCCCcEEEEeeC-CCeEEEEeeccceeeeeeccccccccceee-ecCCCCCCCCCceEEEecCCcEEEE-Eec
Q 001343 875 STFLAFHPQDNNIIAIGTE-DSTIHIYNVRVDELCVWSIDTWEKRKSVTI-HIPAGKTPTGDTRVQFNADQVRMLV-VHE 951 (1096)
Q Consensus 875 i~~l~~s~~d~~~l~s~~~-dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~~l~~-~~d 951 (1096)
+.+++|+ +++|++++. ||.|++||+.++. .. ..+.+|.. .|.+++|+|+|++|++ +.|
T Consensus 449 ~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~---------------~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~d 509 (615)
T 1pgu_A 449 GSAVSLS---QNYVAVGLEEGNTIQVFKLSDLE---------------VSFDLKTPLRA-KPSYISISPSETYIAAGDVM 509 (615)
T ss_dssp EEEEEEC---SSEEEEEETTTSCEEEEETTEEE---------------EEEECSSCCSS-CEEEEEECTTSSEEEEEETT
T ss_pred ceEEEEc---CCEEEEeecCCCeEEEEECCCcc---------------ccccccCCccC-ceEEEEECCCCCEEEEcCCC
Confidence 9999998 669999999 9999999999876 11 56667776 9999999999999999 789
Q ss_pred ceEEEEEcccceeccccccCCCCCCCceEEEEee----------CCcEEEEEecCCcEEEEecCCC-ceeEEEccccccC
Q 001343 952 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSC----------NSQLVFATFCDGNIGVFDADTL-RLRCYIAPSTYLS 1020 (1096)
Q Consensus 952 ~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~----------dg~~la~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~ 1020 (1096)
+.|++||+.+++++..+...| ...|.+++|+| ++++||+++.||.|++||+.++ +....+.
T Consensus 510 g~i~iw~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------ 581 (615)
T 1pgu_A 510 GKILLYDLQSREVKTSRWAFR--TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN------ 581 (615)
T ss_dssp SCEEEEETTTTEEEECCSCCC--SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT------
T ss_pred CeEEEeeCCCCcceeEeecCC--CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh------
Confidence 999999999999988887634 89999999999 9999999999999999999998 4544332
Q ss_pred CCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCC
Q 001343 1021 PSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1061 (1096)
Q Consensus 1021 ~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~ 1061 (1096)
+ |...|+ +++|+| ++. |++++.||+|++|++..
T Consensus 582 -~---h~~~v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 582 -A---HKDGVN--NLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp -S---STTCEE--EEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred -c---CccceE--EEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 3 888999 599999 888 99999999999999875
No 7
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-56 Score=556.16 Aligned_cols=607 Identities=12% Similarity=0.089 Sum_probs=447.3
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 338 ~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
....+|.+.|+|++|+|+|+ +||+|+.||+|+||+..+++... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 44467999999999999999 79999999999999988766543 223788999999999
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceE---------
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL--------- 487 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~--------- 487 (1096)
|++|++++.|++|++||+.+++.+.. +. |.+.|++++|+|+++ +|++|+.||+|++|| .++++.
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~~---~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLTT---VF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEEE---EE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEEE---Ec-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 88999999999999999999877663 43 778999999999999 899999999999999 665543
Q ss_pred --EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC------------------CCcEEEEEEc
Q 001343 488 --FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------------------GHWCTTMLYS 547 (1096)
Q Consensus 488 --~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~i~~l~~s 547 (1096)
..+.+|.++|.+++|+|. ++..+++|+.||.| +||+++.+....+..+ ...|.+++|+
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred cccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 234679999999999884 24689999999999 9999998877777655 3579999999
Q ss_pred CCCCEEEEEeeccCCCCeEEEEeCCCCeeeEE--Ec---Cc------------CccceEEEEEeC----CC-CEEEEEEc
Q 001343 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT--YA---GF------------RKKSNGVVQFDT----TQ-NHFLAVGE 605 (1096)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~---~~------------~~~~i~~~~~~~----~~-~~l~~~~~ 605 (1096)
|+|++|++++. |+.|++||+++++.+.. +. .| ....|.+++|++ ++ ..+++|+.
T Consensus 221 pdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 221 PNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp TTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999997 99999999999987754 21 22 122688999964 43 45666766
Q ss_pred C-----CeEEEEeCC------------------CCeEEEEeecCCCCCCccEEEEeC----------CCCEEEEEECCCc
Q 001343 606 D-----SQIKFWDMD------------------NVNILTSTDAEGGLPNLPRLRFSK----------EGNLLAVTTADNG 652 (1096)
Q Consensus 606 d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~~~~~dg~ 652 (1096)
+ +.+.+|++. +.+....+... +...|.++.+.+ +...+++++.|+.
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence 5 378899852 22233344321 123677888765 3447899999999
Q ss_pred EEEEEcCCCccccccccCCC-cccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccc
Q 001343 653 FKILANAIGLRSLRAVENPP-FEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTV 731 (1096)
Q Consensus 653 i~iwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 731 (1096)
|++|++.++.........+. ...+...|+++++++...
T Consensus 376 l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~----------------------------------------- 414 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPN----------------------------------------- 414 (902)
T ss_dssp EEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEH-----------------------------------------
T ss_pred EEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCH-----------------------------------------
Confidence 99999977633322211111 111224566666654321
Q ss_pred cCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCcc
Q 001343 732 DDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQ 811 (1096)
Q Consensus 732 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~ 811 (1096)
++|+...... .... ..+.| |...+.+++|+|+++.+++++.|++|++|++....... ..
T Consensus 415 -------~~w~~~~~~~-~~~~-~~l~G---~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~---------~~ 473 (902)
T 2oaj_A 415 -------KLWLGALSAA-QNKD-YLLKG---GVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD---------NA 473 (902)
T ss_dssp -------HHHHHHHHTT-BCCC-CSCCC---SBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT---------TB
T ss_pred -------HHHHHHHhcc-cCCC-CcccC---CcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC---------Cc
Confidence 2233210000 0000 13455 77888899999999999999999999999986532100 00
Q ss_pred ccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccc----------------------------
Q 001343 812 HWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF---------------------------- 862 (1096)
Q Consensus 812 ~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~---------------------------- 862 (1096)
++... .....-.+ |...|.+++|+|||++||+|+ ||+|+|||+.++
T Consensus 474 ~~~~~---l~~~~~~~--h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (902)
T 2oaj_A 474 SFEVN---LSRTLNKA--KELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNG 548 (902)
T ss_dssp CEEEE---HHHHTTCS--SSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSC
T ss_pred eEEee---chhhcCCC--CCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcc
Confidence 00000 00000013 889999999999999999999 799999999766
Q ss_pred -----------------eEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeec
Q 001343 863 -----------------KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHI 925 (1096)
Q Consensus 863 -----------------~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~ 925 (1096)
+++..+.+|.+.|++|+||| || +||+|+.|++|+|||+.+.. .++. ..+..
T Consensus 549 ~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~-~~~~---------~~~~~ 616 (902)
T 2oaj_A 549 VLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPA-IIYM---------ENIRE 616 (902)
T ss_dssp SEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTE-EEEE---------EEGGG
T ss_pred ccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCe-EEEE---------eehhH
Confidence 34678889999999999999 89 99999999999999998765 1110 01234
Q ss_pred CC-CCCCCCCceEEEe-----cCC---cEEEE-EecceEEEEEc---ccceeccccccCCC--CCCCceEEE-Ee-----
Q 001343 926 PA-GKTPTGDTRVQFN-----ADQ---VRMLV-VHETQLAIYDA---SKMERIRQWTPQDA--LSAPISCAV-YS----- 984 (1096)
Q Consensus 926 ~~-~~~~~~v~~v~fs-----~dg---~~l~~-~~d~~i~iwd~---~~~~~~~~~~~~~~--~~~~i~~l~-~s----- 984 (1096)
+. +|.. .|++++|| ||| ++|++ +.|++|++||+ .+|++..++.++.. +.+.|.+++ |+
T Consensus 617 ~~~gh~~-~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 695 (902)
T 2oaj_A 617 ISGAQSA-CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKS 695 (902)
T ss_dssp TCSSCCC-CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCC
T ss_pred hcccccc-ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCC
Confidence 54 7876 99999999 886 89999 78999999999 88888877765421 157788777 66
Q ss_pred -----------------eCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccce-EEE------ecCC
Q 001343 985 -----------------CNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPL-VVA------AHPL 1040 (1096)
Q Consensus 985 -----------------~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~-~l~------~s~~ 1040 (1096)
++|.+|+++ +..|+||++.++++..... + |...+.++ .+. |++
T Consensus 696 ~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~-------~---~~~~~~~v~~~~~~~~~~~~~- 762 (902)
T 2oaj_A 696 SCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGF-------K---YPLAATGLSYISTVEKNNDRK- 762 (902)
T ss_dssp BCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEEC-------S---SCEEEEEEEEEEEECSSSCEE-
T ss_pred cccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEc-------c---cceeeeEEEEEEecccccccc-
Confidence 566666654 7789999999998665432 1 44445531 135 777
Q ss_pred CCceEEEEeeCCcEEEEccCCCC--CccccCCCC
Q 001343 1041 EPNQFAIGLTDGSVKVMEPSESE--GKWGVSPPV 1072 (1096)
Q Consensus 1041 d~~~l~s~~~dg~i~vW~v~~~~--~~~~~~~~~ 1072 (1096)
++..|++++.||+|++|++.+.+ ...+.+++.
T Consensus 763 ~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~ 796 (902)
T 2oaj_A 763 NLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPI 796 (902)
T ss_dssp EEEEEEEEETTSEEEEEETTTCCEEEEEECSSCC
T ss_pred CceEEEEEeCCCcEEEEECcchHHHhhccCCccc
Confidence 89999999999999999999988 444444433
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.4e-56 Score=588.34 Aligned_cols=583 Identities=14% Similarity=0.181 Sum_probs=463.5
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
.+.+|.+.|++++|+|||++||+|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++|+.|++|++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 478899999999999999999999999999999999988766 5789999999999999999 89999999999999
Q ss_pred E-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeec
Q 001343 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
| .+++.+..+.+|...|.+++|++..++.++++|+.||.|++||++++.....+..|...|.+++|+|+++++++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~- 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA- 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES-
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC-
Confidence 9 89999999999999999999998777789999999999999999999999999999999999999999999999987
Q ss_pred cCCCCeEEEEeCCCCeeeEEEcCcC------------ccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCC
Q 001343 560 KDGDSFLVEWNESEGTIKRTYAGFR------------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (1096)
++.|++||+.+++....+.... ...+.+++|+|++..+++++ ++.+.+||+.++..+..+...
T Consensus 764 ---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~- 838 (1249)
T 3sfz_A 764 ---DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTG- 838 (1249)
T ss_dssp ---SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECS-
T ss_pred ---CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCC-
Confidence 9999999999998877765321 12567789999999999887 689999999999888777632
Q ss_pred CCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeE-ecc
Q 001343 628 GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKV-ERS 706 (1096)
Q Consensus 628 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~-~~~ 706 (1096)
+...|.+++|+|++.++++++.||.|++|++.++ .....+.++. ..|.+++|+|+|+.++++...+...+ +..
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h~-----~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRGHL-----SWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECCCS-----SCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecCCCc-----cceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 2348999999999999999999999999999887 5566666653 45788999888877644433222111 100
Q ss_pred CCCc--CCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeec
Q 001343 707 SPVR--PSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS 784 (1096)
Q Consensus 707 ~~~~--~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 784 (1096)
.... ....-......+.+++..++.....+.+.++... .+.... . +...+.+++|+|++..+++++.
T Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~------~~~~i~~~~~sp~g~~l~~g~~ 981 (1249)
T 3sfz_A 913 KVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGK----TGQIDY-L------PEAQVSCCCLSPHLEYVAFGDE 981 (1249)
T ss_dssp HHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEES----SCCEEE-E------CCSCEEEEEECTTSSEEEEEET
T ss_pred ccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecC----cceEEE-c------ccCcEEEEEEcCCCCEEEEEcC
Confidence 0000 0000000001111112222222222222222221 111111 1 4567999999999999999999
Q ss_pred CCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccce
Q 001343 785 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFK 863 (1096)
Q Consensus 785 dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~ 863 (1096)
+|.+++|++.. +.... .+.+ |...|++++|+|+|++|++++ ||.|++||+.+++
T Consensus 982 ~g~i~i~d~~~----------------------~~~~~-~~~~--h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A 982 DGAIKIIELPN----------------------NRVFS-SGVG--HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp TSCCEEEETTT----------------------TSCEE-ECCC--CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred CCCEEEEEcCC----------------------Cceee-eccc--CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence 99999998643 22222 3444 899999999999999999998 7999999999988
Q ss_pred EEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCC
Q 001343 864 VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ 943 (1096)
Q Consensus 864 ~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg 943 (1096)
... +..|...|.+++|+| ++ .+++++.||.|++||+.+++ .+..+.+|.. .|.+++|+|||
T Consensus 1037 ~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~vwd~~~~~---------------~~~~~~~~~~-~v~~~~~s~d~ 1097 (1249)
T 3sfz_A 1037 YVF-LQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKVWNVITGR---------------IERDFTCHQG-TVLSCAISSDA 1097 (1249)
T ss_dssp EEC-CBCCSSCEEEEEECS-SS-EEEEEESSSEEEEEETTTTC---------------CCEEEECCSS-CCCCEEECSSS
T ss_pred eEE-EecCCCcEEEEEEcC-CC-cEEEEECCCcEEEEECCCCc---------------eeEEEcccCC-cEEEEEECCCC
Confidence 764 558999999999999 66 57889999999999999887 4556667776 89999999999
Q ss_pred cEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCC
Q 001343 944 VRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPS 1022 (1096)
Q Consensus 944 ~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1022 (1096)
+++++ +.|+.|++||+.+++++..+..| ...|.+++|+|||++|++++.||.|++||+.+++....+.+.... ..
T Consensus 1098 ~~l~s~s~d~~v~iwd~~~~~~~~~l~~h---~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~ 1173 (1249)
T 3sfz_A 1098 TKFSSTSADKTAKIWSFDLLSPLHELKGH---NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVE-EG 1173 (1249)
T ss_dssp SSCEEECCSSCCCEECSSSSSCSBCCCCC---SSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-----
T ss_pred CEEEEEcCCCcEEEEECCCcceeeeeccC---CCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccc-cc
Confidence 99999 78999999999999988888765 889999999999999999999999999999999865443211100 01
Q ss_pred ccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCCCC
Q 001343 1023 VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEG 1064 (1096)
Q Consensus 1023 ~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~~ 1064 (1096)
...|...|+ +++|+| |+.+|++++ |.|++||+.+++.
T Consensus 1174 ~~~~~~~v~--~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1174 TATHGGWVT--DVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp ---CCSCCC--EEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred ccccCceEE--EEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence 112888899 599999 999999885 8999999999874
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2e-54 Score=526.49 Aligned_cols=546 Identities=15% Similarity=0.218 Sum_probs=446.5
Q ss_pred CCceeecCCCce-eeecCCC--CcceEEeec-CCCc-eEEEEEcC--CCCcEEEEEeCCCeEEEEecCCCCeeeccccee
Q 001343 315 AEEVTYSSSRHQ-TWSLDDL--PRTVAVSLH-QGST-VISMDFHP--SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI 387 (1096)
Q Consensus 315 ~~~v~~~~~~~~-~~~~~~~--~~~~~~~l~-h~~~-V~~v~fsp--~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~ 387 (1096)
...+++..++.. +|++++. +......+. |... |++++|+| +|+ +||+|+.||.|+|||+.+++.......
T Consensus 30 g~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~-- 106 (615)
T 1pgu_A 30 TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKESNSVEV-- 106 (615)
T ss_dssp TTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEGGGTEEEE--
T ss_pred CCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCC-EEEEecCCCEEEEEeCCCCcccccccc--
Confidence 334444443322 8988743 114555555 9999 99999999 999 799999999999999976511000000
Q ss_pred ecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECC----CeEEEEEccCCCccccceeecccccCEEEEEEecCC
Q 001343 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN 463 (1096)
Q Consensus 388 ~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~ 463 (1096)
.....+.+|...|.+++|+|++++|++++.+ +.|++|| .++.+. .+.+|...|++++|+|++
T Consensus 107 ---------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~~~~~v~~~~~~~~~ 172 (615)
T 1pgu_A 107 ---------NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSGHSQRINACHLKQSR 172 (615)
T ss_dssp ---------EEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCSCSSCEEEEEECSSS
T ss_pred ---------cccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce---eeecCCccEEEEEECCCC
Confidence 0011366799999999999999999999987 6888888 444444 578999999999999999
Q ss_pred CcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC---CeEEEEeeecCC-CcEEEEEECCCeEEEEEcCCCCeeeEE-e--
Q 001343 464 KLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA---PVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDTMGSRVDY-D-- 535 (1096)
Q Consensus 464 ~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~---~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~-~-- 535 (1096)
+. .+++++.|+.|++|| .+++.+..+.+|.. .|.+++|+| + +.+|++++.||.|++||+++++....+ .
T Consensus 173 ~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 249 (615)
T 1pgu_A 173 PM-RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP--DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ 249 (615)
T ss_dssp SC-EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS--TTCCEEEEEETTCCEEEEETTTCCEEEECCBTT
T ss_pred Cc-EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC--CCCCEEEEEeCCCeEEEEECCCCCEeEEecccc
Confidence 75 699999999999999 88999999999999 999999987 5 689999999999999999999888888 5
Q ss_pred -CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC---ccceEEEEEeCCCCEEEEEEcCCeEEE
Q 001343 536 -APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR---KKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1096)
Q Consensus 536 -~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i 611 (1096)
.|...|.+++|+ +++++++++. ++.|++||+.+++.+..+..+. ...+..+.+. ++.++++++.||.|++
T Consensus 250 ~~~~~~v~~~~~~-~~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~ 323 (615)
T 1pgu_A 250 EPVQGGIFALSWL-DSQKFATVGA----DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNF 323 (615)
T ss_dssp BCCCSCEEEEEES-SSSEEEEEET----TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEE
T ss_pred cccCCceEEEEEc-CCCEEEEEcC----CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEE
Confidence 788899999999 9999999987 8999999999999999988763 2356667775 8899999999999999
Q ss_pred EeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCe
Q 001343 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (1096)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 691 (1096)
||+.+++.+..+..+.. .|.+++| |+ +++++.||.|++|++. .+. .. +...|.+++| ++
T Consensus 324 ~d~~~~~~~~~~~~~~~--~v~~~~~-~~---l~~~~~dg~i~~w~~~----~~~--~~-----~~~~v~~~~~-~~--- 382 (615)
T 1pgu_A 324 YELGHDEVLKTISGHNK--GITALTV-NP---LISGSYDGRIMEWSSS----SMH--QD-----HSNLIVSLDN-SK--- 382 (615)
T ss_dssp EETTEEEEEEEECCCSS--CEEEEET-TT---TEEEETTSCEEETTTT----EEE--CC-----CCSCEEEEEC-CS---
T ss_pred EECCCCcEEEEEeCCCC--CEEEEEe-cC---cEEECCCCeEEEEEch----hhc--Cc-----ccCceEEEEE-CC---
Confidence 99999998888887655 8999999 88 9999999999999986 121 22 2345666666 22
Q ss_pred EEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEE
Q 001343 692 AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLL 771 (1096)
Q Consensus 692 lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 771 (1096)
+..+++++.|+.+++|++... . ....+.+++
T Consensus 383 ----------------------------------~~~l~~~~~d~~i~~~~~~~~---------~------~~~~~~~~~ 413 (615)
T 1pgu_A 383 ----------------------------------AQEYSSISWDDTLKVNGITKH---------E------FGSQPKVAS 413 (615)
T ss_dssp ----------------------------------TTCCEEEETTTEEEETTEEEE---------E------CSSCEEEEE
T ss_pred ----------------------------------CcEEEEEeCCCCEEEEEcccC---------c------ccCCceEEE
Confidence 345578888999999998731 1 122678999
Q ss_pred EecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-
Q 001343 772 YTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT- 850 (1096)
Q Consensus 772 ~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~- 850 (1096)
++|++..++++ .++.+.+|++.. ++.+. .+. +...+.+++|+ +++|++++
T Consensus 414 ~s~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~-~~~---~~~~~~~~~~~--~~~l~~~~~ 464 (615)
T 1pgu_A 414 ANNDGFTAVLT-NDDDLLILQSFT----------------------GDIIK-SVR---LNSPGSAVSLS--QNYVAVGLE 464 (615)
T ss_dssp ECSSSEEEEEE-TTSEEEEEETTT----------------------CCEEE-EEE---CSSCEEEEEEC--SSEEEEEET
T ss_pred EcCCCCEEEEe-CCCceEEEeccC----------------------Cceee-ecc---cCCCceEEEEc--CCEEEEeec
Confidence 99999855555 788899988632 22222 122 67889999999 78888887
Q ss_pred -CCeEEEEEcccceEE-EeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCC
Q 001343 851 -GGKISLFNMMTFKVM-TTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAG 928 (1096)
Q Consensus 851 -dg~v~iwd~~~~~~~-~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 928 (1096)
++.|++||+.+++.. ..+..|...|++++|+| ++++|++++.||.|++||+.+++ .+..+.+
T Consensus 465 ~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~ 528 (615)
T 1pgu_A 465 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSRE---------------VKTSRWA 528 (615)
T ss_dssp TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTE---------------EEECCSC
T ss_pred CCCeEEEEECCCccccccccCCccCceEEEEECC-CCCEEEEcCCCCeEEEeeCCCCc---------------ceeEeec
Confidence 688999999888776 77889999999999999 99999999999999999999887 5566666
Q ss_pred -CCCCCCceEEEec----------CCcEEEE-EecceEEEEEcccc-eeccccccCCCCCCCceEEEEeeCCcEEEEEec
Q 001343 929 -KTPTGDTRVQFNA----------DQVRMLV-VHETQLAIYDASKM-ERIRQWTPQDALSAPISCAVYSCNSQLVFATFC 995 (1096)
Q Consensus 929 -~~~~~v~~v~fs~----------dg~~l~~-~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~ 995 (1096)
|.. .|++++|+| ++++|++ +.|+.|++||+.++ +++..+..| ...|.+++|+|+++ |++++.
T Consensus 529 ~h~~-~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h---~~~v~~l~~s~~~~-l~s~~~ 603 (615)
T 1pgu_A 529 FRTS-KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH---KDGVNNLLWETPST-LVSSGA 603 (615)
T ss_dssp CCSS-CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS---TTCEEEEEEEETTE-EEEEET
T ss_pred CCCC-ceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcC---ccceEEEEEcCCCC-eEEecC
Confidence 776 999999999 9999999 78999999999998 666666654 89999999999999 999999
Q ss_pred CCcEEEEecCC
Q 001343 996 DGNIGVFDADT 1006 (1096)
Q Consensus 996 dg~i~vwd~~~ 1006 (1096)
||.|++|+++.
T Consensus 604 d~~v~iw~~~~ 614 (615)
T 1pgu_A 604 DACIKRWNVVL 614 (615)
T ss_dssp TSCEEEEEEC-
T ss_pred CceEEEEeeec
Confidence 99999999875
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-50 Score=505.58 Aligned_cols=604 Identities=10% Similarity=0.036 Sum_probs=408.1
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1096)
+|+... .++...+.|...|++++|+| |+ +|++|+.|++|+|||+.+++.+.. +. |.
T Consensus 43 lw~~~~--~~~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~~-------------------~~-~~ 98 (902)
T 2oaj_A 43 IYGQQQ--VEVVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLTT-------------------VF-VP 98 (902)
T ss_dssp EECSTT--CEEEEECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEEE-------------------EE-CS
T ss_pred EEeCCC--cEEEEEcCCCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCcEEEE-------------------Ec-CC
Confidence 777643 45566677999999999999 88 799999999999999999887653 22 66
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcccc-c-------eeecccccCEEEEEEecCCCcEEEEEEeCCCcEE
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQ-H-------SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~-~-------~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~ 478 (1096)
..|++++|+|++++|++|+.||.|++||+.+++.... . ..+.+|.+.|++++|+|++.. .|++|+.|+.|
T Consensus 99 ~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~-~l~~g~~dg~v- 176 (902)
T 2oaj_A 99 GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG-TVLISYEYVTL- 176 (902)
T ss_dssp SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE-EEEEECSSCEE-
T ss_pred CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCC-EEEEEeCCCcE-
Confidence 7899999999999999999999999999998764310 0 235789999999999997533 78999999999
Q ss_pred EEE-cCCceEEEeeCC------------------CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe----
Q 001343 479 VWE-LSGRKLFNFEGH------------------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---- 535 (1096)
Q Consensus 479 iwd-~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---- 535 (1096)
+|| .+++++..+.+| ...|++++|+| +|.+|++++.||+|++||+++++.+....
T Consensus 177 lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~ 254 (902)
T 2oaj_A 177 TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP--NSLHIITIHEDNSLVFWDANSGHMIMARTVFET 254 (902)
T ss_dssp EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT--TSSEEEEEETTCCEEEEETTTCCEEEEECSSCS
T ss_pred EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCcEEEEEeeccc
Confidence 999 888888888766 57799999977 67899999999999999999877654321
Q ss_pred -C-------------CCCcEEEEEEc----CCC-CEEEEEeeccC-CCCeEEEEeCC------------------CCeee
Q 001343 536 -A-------------PGHWCTTMLYS----ADG-SRLFSCGTSKD-GDSFLVEWNES------------------EGTIK 577 (1096)
Q Consensus 536 -~-------------~~~~i~~l~~s----~~~-~~l~~~~~~~~-~~~~i~iwd~~------------------~~~~~ 577 (1096)
. +...|.+++|+ |++ ..+++++.+.. ....+.+|++. +++..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 334 (902)
T 2oaj_A 255 EINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQM 334 (902)
T ss_dssp CTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEE
T ss_pred ccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccce
Confidence 1 23479999995 444 34555544211 12478888842 22334
Q ss_pred EEEcCcCccceEEEEEeC----------CCCEEEEEEcCCeEEEEeCCCCeEEEEe-----ecCCCCCCccEEEEeCCCC
Q 001343 578 RTYAGFRKKSNGVVQFDT----------TQNHFLAVGEDSQIKFWDMDNVNILTST-----DAEGGLPNLPRLRFSKEGN 642 (1096)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~----------~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~ 642 (1096)
+.+.......+..+.+.+ +...+++++.||.|++|++.++...... ....+...|++++|++...
T Consensus 335 ~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~ 414 (902)
T 2oaj_A 335 KIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPN 414 (902)
T ss_dssp EEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEH
T ss_pred EEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCH
Confidence 444421222566676654 3447899999999999999877543320 1111123566666543210
Q ss_pred EEEEEECCCcEEEEEcC-----CCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccC
Q 001343 643 LLAVTTADNGFKILANA-----IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717 (1096)
Q Consensus 643 ~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~ 717 (1096)
++|+.. .+...+. ++.. .+..++|+
T Consensus 415 -----------~~w~~~~~~~~~~~~~l~---G~~~-----~v~sv~~s------------------------------- 444 (902)
T 2oaj_A 415 -----------KLWLGALSAAQNKDYLLK---GGVR-----TKRQKLPA------------------------------- 444 (902)
T ss_dssp -----------HHHHHHHHTTBCCCCSCC---CSBC-----CCCCCCCC-------------------------------
T ss_pred -----------HHHHHHHhcccCCCCccc---CCcC-----CCCccccc-------------------------------
Confidence 111100 0111111 1111 12223333
Q ss_pred CCCccCCCCCCccccCCCCCccceeeeeeecC-CceEEEEcC-----CCCCCcccEEEEEEecCCceEEEeecCCeEEEe
Q 001343 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDS-GQCRLVTMP-----ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 791 (1096)
Q Consensus 718 ~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~-----~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw 791 (1096)
||++++++++.|++|++||+...... .......+. + |...|.+++|+||++.|++++.||+|++|
T Consensus 445 ------pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~---h~~~V~svafspdg~~LAsgs~DgtV~lw 515 (902)
T 2oaj_A 445 ------EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKA---KELAVDKISFAAETLELAVSIETGDVVLF 515 (902)
T ss_dssp ------SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCS---SSCCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ------ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCC---CCCceeEEEecCCCCeEEEEecCcEEEEE
Confidence 33444466677777777776532100 011111111 4 88899999999999999999999999999
Q ss_pred eccCCccCCC-------C-ce------eeecC---cccc-----ccCccccccccccCCCcCCCeeeeeecCCCcEEEEe
Q 001343 792 KWHRNEQNPS-------G-KA------TASAV---PQHW-----LPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA 849 (1096)
Q Consensus 792 ~~~~~~~~~~-------g-~~------~~~~~---i~~w-----~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~ 849 (1096)
++....+... . .. +.... ..+. ....+......+.+ |...|++++||||| +||+|
T Consensus 516 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--h~~~V~svafSpdG-~lAsg 592 (902)
T 2oaj_A 516 KYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA--NKGKTSAINNSNIG-FVGIA 592 (902)
T ss_dssp EEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC--CSCSEEEEEECBTS-EEEEE
T ss_pred EecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEc--CCCcEEEEEecCCc-EEEEE
Confidence 9976421000 0 00 00000 0000 00111111224566 99999999999999 99999
Q ss_pred c-CCeEEEEEcccceEEE-----eec-CCCCCeeEEEEe-----cCCC---cEEEEeeCCCeEEEEee---ccceeeeee
Q 001343 850 T-GGKISLFNMMTFKVMT-----TFM-SPPPASTFLAFH-----PQDN---NIIAIGTEDSTIHIYNV---RVDELCVWS 911 (1096)
Q Consensus 850 ~-dg~v~iwd~~~~~~~~-----~~~-~h~~~i~~l~~s-----~~d~---~~l~s~~~dg~i~iw~~---~~~~~~~w~ 911 (1096)
+ |++|+|||+.++..+. .+. +|.+.|++|+|+ | |+ ++|++|+.|++|++||+ .+++ +
T Consensus 593 s~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~-~--- 667 (902)
T 2oaj_A 593 YAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGD-DGYSSILMVCGTDMGEVITYKILPASGGK-F--- 667 (902)
T ss_dssp ETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTT-SSSEEEEEEEEETTSEEEEEEEEECGGGC-E---
T ss_pred eCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCC-CCCcceEEEEEecCCcEEEEEEecCCCCc-E---
Confidence 9 7999999998877653 343 899999999999 8 64 89999999999999999 6655 2
Q ss_pred ccccccccceeeecCCCCC----CCCCceEE-Ee----------------------cCCcEEEEEecceEEEEEccccee
Q 001343 912 IDTWEKRKSVTIHIPAGKT----PTGDTRVQ-FN----------------------ADQVRMLVVHETQLAIYDASKMER 964 (1096)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~----~~~v~~v~-fs----------------------~dg~~l~~~~d~~i~iwd~~~~~~ 964 (1096)
...+.+|. .+.|..+. |+ ++|..|+++ +..++||++.++++
T Consensus 668 -----------~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~k~ 735 (902)
T 2oaj_A 668 -----------DVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGKSKS 735 (902)
T ss_dssp -----------EEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTCCCE
T ss_pred -----------EEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCccccc
Confidence 22222221 02555555 54 556555555 88999999999999
Q ss_pred ccccccCCCCCCCceEE---E------EeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEE
Q 001343 965 IRQWTPQDALSAPISCA---V------YSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVV 1035 (1096)
Q Consensus 965 ~~~~~~~~~~~~~i~~l---~------~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l 1035 (1096)
.+....+ ...+.++ . |+++|..|++++.||.|++|++.+++.+......... ....+.. .
T Consensus 736 ~~k~~~~---~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~------~~~~~~~--~ 804 (902)
T 2oaj_A 736 THKGFKY---PLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPI------AAKYITE--S 804 (902)
T ss_dssp EEEECSS---CEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCC------CHHHHTT--C
T ss_pred eeeEccc---ceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCccc------ccccccc--e
Confidence 8877544 4455555 5 7899999999999999999999999977665532211 1112332 5
Q ss_pred EecCCCCceEEEEe
Q 001343 1036 AAHPLEPNQFAIGL 1049 (1096)
Q Consensus 1036 ~~s~~d~~~l~s~~ 1049 (1096)
.|.+ +|+.|.-.+
T Consensus 805 ~~~~-~G~~~~~~~ 817 (902)
T 2oaj_A 805 SVLR-NGDIAIRVS 817 (902)
T ss_dssp EECT-TSCEEEECS
T ss_pred EEcC-CCCEEEEeC
Confidence 7777 788776544
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.2e-47 Score=480.54 Aligned_cols=574 Identities=14% Similarity=0.181 Sum_probs=419.9
Q ss_pred EEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC
Q 001343 338 AVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1096)
Q Consensus 338 ~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1096)
.+++. |.+.|++++|||+|+ +||+|+.||.|+|||+.+++.+.. +.+|...|.+++|+|
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s~ 65 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFIA 65 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEG
T ss_pred ceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEeC
Confidence 44555 999999999999999 799999999999999999887653 678999999999999
Q ss_pred CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC-ceEEEeeCCC
Q 001343 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHE 494 (1096)
Q Consensus 417 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~-~~~~~~~~~~ 494 (1096)
++++|++|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ .|++++.||.|++|| .++ .....+.+|.
T Consensus 66 ~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 140 (814)
T 3mkq_A 66 RKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHE 140 (814)
T ss_dssp GGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCC
Confidence 99999999999999999999987766 5778999999999999999 899999999999999 655 6778889999
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC-CcEEEEEEcC--CCCEEEEEeeccCCCCeEEEEeC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~--~~~~l~~~~~~~~~~~~i~iwd~ 571 (1096)
.+|.+++|+|. ++..+++++.||+|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++||+
T Consensus 141 ~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d~ 215 (814)
T 3mkq_A 141 HFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDY 215 (814)
T ss_dssp SCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEET
T ss_pred CcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEEC
Confidence 99999999873 45799999999999999999888877776655 7899999999 9999999986 999999999
Q ss_pred CCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCC--EEEEEEC
Q 001343 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN--LLAVTTA 649 (1096)
Q Consensus 572 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~ 649 (1096)
.+++.+..+.+|.. .+.+++|+|+++++++++.||.|++||+.+++.+..+..+.. .+.+++|+|++. +++++ .
T Consensus 216 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~-~ 291 (814)
T 3mkq_A 216 QTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASG-F 291 (814)
T ss_dssp TTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEEE-E
T ss_pred CCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEEE-e
Confidence 99999999999877 899999999999999999999999999999999998887755 899999999986 35544 5
Q ss_pred CCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCc
Q 001343 650 DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPR 729 (1096)
Q Consensus 650 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 729 (1096)
++.+.+|++..+ ...+.++|+|+.+++........ . +
T Consensus 292 ~~~~~~~~~~~~------------------~~~~~~~~~g~~~~~~~~~~~~~------------------------~-~ 328 (814)
T 3mkq_A 292 DNGFTVLSLGND------------------EPTLSLDPVGKLVWSGGKNAAAS------------------------D-I 328 (814)
T ss_dssp TTEEEEEECSCC------------------SCCEEECSSSEEEEECCTTSCTT------------------------C-E
T ss_pred CCCEEEEEcCCC------------------CceeEECCCCCEEEECcccccce------------------------e-e
Confidence 667889987544 12367888888775543321000 0 0
Q ss_pred cccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecC
Q 001343 730 TVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 809 (1096)
Q Consensus 730 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~ 809 (1096)
..... -..|++.... ........+.. +...+.+++|+|+|+.+++++ ++.+.+|++..
T Consensus 329 ~~~~~---~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~-------------- 386 (814)
T 3mkq_A 329 FTAVI---RGNEEVEQDE-PLSLQTKELGS---VDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALA-------------- 386 (814)
T ss_dssp EEEEC---CSCCCCCSSS-CBCCCCEEECC---CSSCCSEEEECTTSSEEEEEE-TTEEEEEETTT--------------
T ss_pred eeeec---ccccccccCc-cceeeeecCCC---CccCCceeEECCCCCEEEEec-CCEEEEEECcc--------------
Confidence 00000 0011111000 00111112233 667889999999999777776 89999998632
Q ss_pred ccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCC---
Q 001343 810 PQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN--- 885 (1096)
Q Consensus 810 i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~--- 885 (1096)
|. .. +.+.+.+++|+|||+++|+++ +|.|++|+ .+.+|...+.+++|+| ++
T Consensus 387 ---~~-----------~~--~~~~i~~~~~spdg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~-dg~~~ 441 (814)
T 3mkq_A 387 ---WR-----------NK--AFGKCQDFVWGPDSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAI-DRLFS 441 (814)
T ss_dssp ---TE-----------EE--EEEECSEEEECTTSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCC-CEEEC
T ss_pred ---cc-----------cc--CCCceEEEEEeCCCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCc-cceec
Confidence 10 00 446788999999999999998 69999996 3456888899999999 77
Q ss_pred cEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEE------ecceEEEEEc
Q 001343 886 NIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV------HETQLAIYDA 959 (1096)
Q Consensus 886 ~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~------~d~~i~iwd~ 959 (1096)
.+|++++.|+.|++||+.+++ .+..+.++. ..+.|+|||++|+++ .++.+.+|..
T Consensus 442 ~~l~~~~~d~~v~~~d~~~~~---------------~~~~~~~~~----~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 442 GALLGVKSDGFVYFFDWDNGT---------------LVRRIDVNA----KDVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp SSSEEEEETTEEEEECTTTCC---------------EEEEESSCE----EEEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred ceEEEEecCCEEEEEECCcCc---------------EEEEEecCC----CEEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 589999999999999999887 445555543 389999999999996 5666666644
Q ss_pred ccceeccccccC-----CCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceE
Q 001343 960 SKMERIRQWTPQ-----DALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLV 1034 (1096)
Q Consensus 960 ~~~~~~~~~~~~-----~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~ 1034 (1096)
..+.....+... .+.......+. + -+..+.++..++.+.+|....+++............. ....+. .
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~i~s~~w~~~~~i~~t~~~~~~~~~~~~~~~~~~---~~~~~~--~ 575 (814)
T 3mkq_A 503 NKDAYLEAANNGNIDDSEGVDEAFDVLY-E-LSESITSGKWVGDVFIFTTATNRLNYFVGGKTYNLAH---YTKEMY--L 575 (814)
T ss_dssp CHHHHHHHHHHTCCBTTTBCTTTEEEEE-E-ECSCCSEEEEETTEEEEECTTSEEEEEETTEEEEEEE---CSSCCE--E
T ss_pred chHHhhhhhhccCCccccchhhheeeee-E-eccEEEeeEEeCCEEEEEcCCCeEEEEeCCeeEEEEE---CCccEE--E
Confidence 322211111000 00000000000 0 0111222333344444443222221111100000000 223444 3
Q ss_pred EEecCCCCceEEEEeeCCcEEEEccCCC
Q 001343 1035 VAAHPLEPNQFAIGLTDGSVKVMEPSES 1062 (1096)
Q Consensus 1035 l~~s~~d~~~l~s~~~dg~i~vW~v~~~ 1062 (1096)
+.|.+ +++.++....++.++.|++...
T Consensus 576 ~~~~~-~~~~l~~~d~~~~~~~~~l~~~ 602 (814)
T 3mkq_A 576 LGYLA-RDNKVYLADREVHVYGYEISLE 602 (814)
T ss_dssp EEEEG-GGTEEEEECTTCCEEEEECCHH
T ss_pred EEEEe-cCCEEEEEcCCCCEEEEEECcH
Confidence 66777 7888988899999999997643
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-44 Score=455.49 Aligned_cols=464 Identities=15% Similarity=0.185 Sum_probs=383.3
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
.+.+|.+.|.+++|+|++++||+|+.||.|+|||+.+++.+. .+.+|.+.|++++|+|+++ +|++|+.||.|++|
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 478899999999999999999999999999999999987666 5778999999999999999 89999999999999
Q ss_pred E-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC-CeeeEEeCCCCcEEEEEEcC-CCCEEEEEe
Q 001343 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSA-DGSRLFSCG 557 (1096)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~ 557 (1096)
| .+++.+..+.+|...|++++|+| ++.+|++++.||.|++||+++. .....+..|...|.+++|+| ++..+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 9 89999999999999999999987 6689999999999999999987 55567788899999999999 888999988
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC--CCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEE
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1096)
. ++.|++||+.++.....+..+....+..++|+| ++.++++++.||.|++||+.+++.+..+..+.. .|.++
T Consensus 161 ~----dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~~ 234 (814)
T 3mkq_A 161 L----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFA 234 (814)
T ss_dssp T----TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS--CEEEE
T ss_pred C----CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC--CEEEE
Confidence 7 999999999999888888877755889999999 999999999999999999999999998887765 89999
Q ss_pred EEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcc
Q 001343 636 RFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII 715 (1096)
Q Consensus 636 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~ 715 (1096)
+|+|++.++++++.||.|++||+.++ +...
T Consensus 235 ~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~------------------------------------------------- 264 (814)
T 3mkq_A 235 VFHPTLPIIISGSEDGTLKIWNSSTY-KVEK------------------------------------------------- 264 (814)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTC-SEEE-------------------------------------------------
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCC-cEEE-------------------------------------------------
Confidence 99999999999999999999998655 1111
Q ss_pred cCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceE-EEeecCCeEEEeecc
Q 001343 716 NGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL-LALGSNGVQKLWKWH 794 (1096)
Q Consensus 716 ~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l-~~~~~dg~v~vw~~~ 794 (1096)
.+.. +...+.+++|+|++..+ ++++.++.+.+|++.
T Consensus 265 ----------------------------------------~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (814)
T 3mkq_A 265 ----------------------------------------TLNV---GLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301 (814)
T ss_dssp ----------------------------------------EECC---SSSSEEEEEECTTCGGGEEEEEETTEEEEEECS
T ss_pred ----------------------------------------Eeec---CCCcEEEEEEccCCCceEEEEEeCCCEEEEEcC
Confidence 1112 56688899999998753 667777788888752
Q ss_pred CCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecC-C---eEEE------EEcccceE
Q 001343 795 RNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG-G---KISL------FNMMTFKV 864 (1096)
Q Consensus 795 ~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~d-g---~v~i------wd~~~~~~ 864 (1096)
. ....+.++|+|+++++++. . .+.. |++..+..
T Consensus 302 ~-------------------------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (814)
T 3mkq_A 302 N-------------------------------------DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEP 344 (814)
T ss_dssp C-------------------------------------CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSC
T ss_pred C-------------------------------------CCceeEECCCCCEEEECcccccceeeeeeecccccccccCcc
Confidence 1 1234778899999888762 2 1222 33333332
Q ss_pred E----EeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEe
Q 001343 865 M----TTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFN 940 (1096)
Q Consensus 865 ~----~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs 940 (1096)
. ..+..+...+.+++|+| +++++++++ ||.+.+|++.... .. +. +.+.+++|+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~---------------~~-----~~-~~i~~~~~s 401 (814)
T 3mkq_A 345 LSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWR---------------NK-----AF-GKCQDFVWG 401 (814)
T ss_dssp BCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTE---------------EE-----EE-EECSEEEEC
T ss_pred ceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECcccc---------------cc-----CC-CceEEEEEe
Confidence 2 34456677899999999 999999998 8999999976543 00 01 278899999
Q ss_pred cCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCC---cEEEEEecCCcEEEEecCCCceeEEEccc
Q 001343 941 ADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS---QLVFATFCDGNIGVFDADTLRLRCYIAPS 1016 (1096)
Q Consensus 941 ~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg---~~la~~~~dg~i~vwd~~~~~~~~~~~~~ 1016 (1096)
|||+++++ +.++.+++|+.- ..+ ...+.+++|+||| ++|++++.|+.|++||+.+++....+..
T Consensus 402 pdg~~la~~~~~g~v~l~~~~--------~~~---~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~- 469 (814)
T 3mkq_A 402 PDSNSYALIDETGQIKYYKNF--------KEV---TSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDV- 469 (814)
T ss_dssp TTSSCEEEECTTCCEEEEETT--------EEC---TTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESS-
T ss_pred CCCCeEEEEeCCCcEEEEECC--------CCc---cceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEec-
Confidence 99999999 688999999633 222 6778899999999 6888899999999999999997776652
Q ss_pred cccCCCccCCCccccceEEEecCCCCceEEEE------eeCCcEEEE
Q 001343 1017 TYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIG------LTDGSVKVM 1057 (1096)
Q Consensus 1017 ~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~------~~dg~i~vW 1057 (1096)
|.. .+.|+| ||++|+++ +.++.+.+|
T Consensus 470 ---------~~~-----~v~~s~-dg~~la~~~~~~~~~~~~~~~~~ 501 (814)
T 3mkq_A 470 ---------NAK-----DVIWSD-NGELVMIVNTNSNGDEASGYTLL 501 (814)
T ss_dssp ---------CEE-----EEEECT-TSSEEEEEECCCSSCSCSEEEEE
T ss_pred ---------CCC-----EEEEcC-CCCEEEEEEcCcccCCceEEEEE
Confidence 222 489999 99999999 555555554
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-44 Score=412.78 Aligned_cols=283 Identities=21% Similarity=0.381 Sum_probs=264.9
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
+|.++|++++|+|+++ +||+|+.||+|+|||+.+++.... +.+|...|.+++|+|++++|
T Consensus 106 gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~~~~l 165 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSGKLL 165 (410)
T ss_dssp CCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred ccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCCCCEE
Confidence 5889999999999999 799999999999999999887643 78899999999999999999
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEE
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~ 500 (1096)
++|+.|++|++||+.+++++. .+.+|...|.+++|+|++. +|++|+.|++|++|| .++.++..+.+|...|.++
T Consensus 166 ~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~ 240 (410)
T 1vyh_C 166 ASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240 (410)
T ss_dssp EEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEE
Confidence 999999999999999887766 5789999999999999999 899999999999999 8999999999999999999
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCC--------------------CCEEEEEeecc
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD--------------------GSRLFSCGTSK 560 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~--------------------~~~l~~~~~~~ 560 (1096)
.+++ ++.+|++|+.||+|++||+.+......+..|...|.+++|+|+ +.++++++.
T Consensus 241 ~~~~--~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~-- 316 (410)
T 1vyh_C 241 RPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR-- 316 (410)
T ss_dssp EECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET--
T ss_pred EECC--CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC--
Confidence 9866 6789999999999999999999999999999999999999996 678999987
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCC
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1096)
++.|++||+.++.++..+.+|.. .+.+++|+|++.+|++|+.||.|++||+.+++.+..+..|.. .|.+++|+|+
T Consensus 317 --D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~ 391 (410)
T 1vyh_C 317 --DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKT 391 (410)
T ss_dssp --TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSS
T ss_pred --CCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcCC
Confidence 99999999999999999999987 899999999999999999999999999999999999988765 8999999999
Q ss_pred CCEEEEEECCCcEEEEEc
Q 001343 641 GNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 641 ~~~l~~~~~dg~i~iwd~ 658 (1096)
+.+|++|+.||.|++|+.
T Consensus 392 ~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 392 APYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSCEEEEETTSEEEEEC-
T ss_pred CCEEEEEeCCCcEEEEeC
Confidence 999999999999999986
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-39 Score=358.70 Aligned_cols=292 Identities=15% Similarity=0.222 Sum_probs=264.4
Q ss_pred cceEEee-cCCCceEEEEEcCC----CCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCE
Q 001343 335 RTVAVSL-HQGSTVISMDFHPS----HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1096)
Q Consensus 335 ~~~~~~l-~h~~~V~~v~fsp~----g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (1096)
+.+...+ +|.+.|++++|+|+ +. +||+|+.|++|+||++.+++.... ..+.+|...|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v 83 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGV 83 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCE
Confidence 3444544 49999999999985 45 799999999999999987654321 1278899999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEE
Q 001343 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1096)
Q Consensus 410 ~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~ 488 (1096)
.+++|++++.++++|+.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++|| .+++...
T Consensus 84 ~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 84 VSVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEY 158 (321)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeE
Confidence 999999999999999999999999999987766 5778999999999999999 899999999999999 8899999
Q ss_pred EeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 489 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
.+..|...|.+++|+| ++++|++|+.||.|++||+++++....+..|...|.+++|+|++++|++++. ++.|++
T Consensus 159 ~~~~~~~~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~i 232 (321)
T 3ow8_A 159 SLDTRGKFILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKI 232 (321)
T ss_dssp EEECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEE
T ss_pred EecCCCceEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEE
Confidence 9999999999999977 6789999999999999999999988899999999999999999999999987 999999
Q ss_pred EeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEE
Q 001343 569 WNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1096)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1096)
||+++++....+.+|.. .+.+++|+|++.+|++++.|+.|++||+.+++.+..+..+.. .|.+++|+|++.+|++++
T Consensus 233 wd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~--~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 233 YDVQHANLAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp EETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEE
T ss_pred EECCCcceeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEEEe
Confidence 99999999999999987 899999999999999999999999999999999999887755 899999999999999999
Q ss_pred CCCcEEEEEc
Q 001343 649 ADNGFKILAN 658 (1096)
Q Consensus 649 ~dg~i~iwd~ 658 (1096)
.|+.|++||.
T Consensus 310 ~d~~i~vwd~ 319 (321)
T 3ow8_A 310 DDQEIHIYDC 319 (321)
T ss_dssp TTCCEEEEEC
T ss_pred CCCeEEEEeC
Confidence 9999999996
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.8e-39 Score=358.33 Aligned_cols=292 Identities=18% Similarity=0.286 Sum_probs=262.8
Q ss_pred cceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEE
Q 001343 335 RTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1096)
Q Consensus 335 ~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1096)
.+...++. |.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.+.. +..|...|.+++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~ 104 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA 104 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEE
Confidence 34455665 999999999999999 799999999999999998887653 667999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEEccCCCc-cccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEee
Q 001343 414 WSPDGNYVGVAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1096)
Q Consensus 414 ~spd~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~ 491 (1096)
|+|++++|++|+.|+.|++|++.++.. ......+.+|.+.|.++.|++++. +++++.|++|++|| .+++++..+.
T Consensus 105 ~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp ECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEc
Confidence 999999999999999999999987642 223335789999999999998874 88999999999999 8899999999
Q ss_pred CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC
Q 001343 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~ 571 (1096)
+|...|.+++|+| ++.++++|+.||+|++||++++.....+..|...|.+++|+|+++++++++. ++.|++||+
T Consensus 182 ~h~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~ 255 (340)
T 1got_B 182 GHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDL 255 (340)
T ss_dssp CCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred CCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEEC
Confidence 9999999999977 6689999999999999999999999999999999999999999999999987 999999999
Q ss_pred CCCeeeEEEcCcC-ccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC
Q 001343 572 SEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 572 ~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
++++.+..+..+. ...+.+++|+|+++++++|+.||.|++||+.+++.+..+.+|.. .|.+++|+|++.+|++|+.|
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s~D 333 (340)
T 1got_B 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSCEEEEETT
T ss_pred CCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCCEEEEEcCC
Confidence 9998887775432 12688999999999999999999999999999999999888765 89999999999999999999
Q ss_pred CcEEEEE
Q 001343 651 NGFKILA 657 (1096)
Q Consensus 651 g~i~iwd 657 (1096)
+.|++||
T Consensus 334 ~~i~iWd 340 (340)
T 1got_B 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred ccEEecC
Confidence 9999996
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.3e-39 Score=358.12 Aligned_cols=294 Identities=17% Similarity=0.253 Sum_probs=264.1
Q ss_pred ceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE
Q 001343 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1096)
Q Consensus 336 ~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1096)
....++. |.+.|+|++|+|+++ +||+|+.||+|+|||..+++.... +..|...|.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 114 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAY 114 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEE
Confidence 4455665 999999999999998 799999999999999988876643 5568889999999
Q ss_pred cCCCCEEEEEECCCeEEEEEccCCCc---cccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe
Q 001343 415 SPDGNYVGVAFTKHLIQLYSYAGSND---LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF 490 (1096)
Q Consensus 415 spd~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~ 490 (1096)
+|+|.+|++|+.|+.+++|++..... ......+.+|.+.|.+++|+|++. .|++++.|++|++|| .+++++..+
T Consensus 115 sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 99999999999999999999875421 122335778999999999999999 899999999999999 899999999
Q ss_pred eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEe
Q 001343 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1096)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd 570 (1096)
.+|...|.+++++|.+++.+|++|+.||+|++||+++++....+..|...|.+++|+|++.++++++. |+.|++||
T Consensus 193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd 268 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYD 268 (354)
T ss_dssp ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEE
Confidence 99999999999998777889999999999999999999999999999999999999999999999997 99999999
Q ss_pred CCCCeeeEEEcCcCc-cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEEC
Q 001343 571 ESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1096)
Q Consensus 571 ~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1096)
+++++.+..+..+.. ..+.+++|+|++.++++|+.|+.|++||+.+++.+..+..|.. .|.+++|+|++.+|++|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEEET
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC--cEEEEEECCCCCEEEEEcC
Confidence 999988877765432 2578899999999999999999999999999999988877755 8999999999999999999
Q ss_pred CCcEEEEE
Q 001343 650 DNGFKILA 657 (1096)
Q Consensus 650 dg~i~iwd 657 (1096)
|+.|++|+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999995
No 17
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-38 Score=350.36 Aligned_cols=299 Identities=21% Similarity=0.283 Sum_probs=259.3
Q ss_pred eEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 337 VAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 337 ~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
+..++. |.+.|++++|+|++..+|++|+.|++|++|++......... +...+.+|...|.+++|+
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~s 74 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------PVRSFKGHSHIVQDCTLT 74 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------------EEEEEECCSSCEEEEEEC
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------------cceEEeCCcccEEEEEEC
Confidence 344555 99999999999987458999999999999998754322110 112378999999999999
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCC
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEA 495 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~ 495 (1096)
|++++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||..++++..+.+|..
T Consensus 75 ~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~~~~~~~~~~h~~ 149 (319)
T 3frx_A 75 ADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIKGQCLATLLGHND 149 (319)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETTSCEEEEECCCSS
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeEEEEeccCC
Confidence 999999999999999999999987765 5789999999999999999 89999999999999977889999999999
Q ss_pred CeEEEEeeecC----CCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC
Q 001343 496 PVYSICPHHKE----NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 496 ~v~~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~ 571 (1096)
.|.++.+.|.. ++..+++++.|++|++||+++.+....+..|...|.+++|+|++++|++++. |+.|++||+
T Consensus 150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iwd~ 225 (319)
T 3frx_A 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWNL 225 (319)
T ss_dssp CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEEET
T ss_pred cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEEC
Confidence 99999998743 3458999999999999999998888889999999999999999999999997 999999999
Q ss_pred CCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCC------CCCCccEEEEeCCCCEEE
Q 001343 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG------GLPNLPRLRFSKEGNLLA 645 (1096)
Q Consensus 572 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~ 645 (1096)
.+++.+..+..+. .+.+++|+|++.++++++.+ .+++|++..+..+..+..+. +...+.+++|+|+|++|+
T Consensus 226 ~~~~~~~~~~~~~--~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 302 (319)
T 3frx_A 226 AAKKAMYTLSAQD--EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302 (319)
T ss_dssp TTTEEEEEEECCS--CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEE
T ss_pred CCCcEEEEecCCC--cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEE
Confidence 9999999988653 68899999999998888754 69999999887777665321 233688999999999999
Q ss_pred EEECCCcEEEEEcCCC
Q 001343 646 VTTADNGFKILANAIG 661 (1096)
Q Consensus 646 ~~~~dg~i~iwd~~~~ 661 (1096)
+|+.||.|++||+.++
T Consensus 303 sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 303 AGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEETTSCEEEEEEEEC
T ss_pred EeecCceEEEEEEeec
Confidence 9999999999998654
No 18
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.5e-38 Score=347.20 Aligned_cols=290 Identities=18% Similarity=0.297 Sum_probs=255.2
Q ss_pred eEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 337 VAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 337 ~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
+.+++. |.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.+.. +.+|...|.+++|+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~~ 64 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKFI 64 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEE
T ss_pred eEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEEe
Confidence 345555 999999999999999 799999999999999999887653 67799999999999
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC-ceEEEeeCC
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGH 493 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~-~~~~~~~~~ 493 (1096)
|++++|++|+.|++|++||+.+++.+. .+.+|.+.|++++|+|+++ +|++|+.|++|++|| .++ .....+.+|
T Consensus 65 ~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h 139 (304)
T 2ynn_A 65 ARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (304)
T ss_dssp GGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCC
T ss_pred CCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhccc
Confidence 999999999999999999999988766 5789999999999999999 899999999999999 666 456778999
Q ss_pred CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe-CCCCcEEEEEEcC--CCCEEEEEeeccCCCCeEEEEe
Q 001343 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWN 570 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~--~~~~l~~~~~~~~~~~~i~iwd 570 (1096)
...|.+++|+|. ++.+|++|+.||+|++||++.......+. .+...+..+.|+| ++.++++++. ++.|++||
T Consensus 140 ~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iWd 214 (304)
T 2ynn_A 140 EHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWD 214 (304)
T ss_dssp CSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEEE
T ss_pred CCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEEe
Confidence 999999999874 45799999999999999998877766554 4456889999986 7789999987 99999999
Q ss_pred CCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCC--EEEEEE
Q 001343 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN--LLAVTT 648 (1096)
Q Consensus 571 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~ 648 (1096)
+++++++..+.+|.. .+..++|+|++.+|++|+.||.|++||..+++.+..+..+.. .+.+++|+|++. ++++|+
T Consensus 215 ~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~asg~ 291 (304)
T 2ynn_A 215 YQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGF 291 (304)
T ss_dssp TTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSS--SEEEEEECTTCGGGCEEEEE
T ss_pred CCCCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCc--cEEEEEECCCCCceEEEEec
Confidence 999999999999987 899999999999999999999999999999999999887654 899999999875 577776
Q ss_pred CCCcEEEEEcCC
Q 001343 649 ADNGFKILANAI 660 (1096)
Q Consensus 649 ~dg~i~iwd~~~ 660 (1096)
.| .+.+|++.+
T Consensus 292 ~~-g~~~~~~~~ 302 (304)
T 2ynn_A 292 DN-GFTVLSLGN 302 (304)
T ss_dssp TT-EEEEEECC-
T ss_pred CC-ceEEEEecc
Confidence 65 477777654
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.8e-39 Score=362.74 Aligned_cols=301 Identities=17% Similarity=0.270 Sum_probs=261.5
Q ss_pred cceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEE
Q 001343 335 RTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1096)
Q Consensus 335 ~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1096)
..+.+++. |.+.|++++|+|+|+ +||+|+.||+|+|||+.+++.... +.+|...|.+++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~ 115 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECA 115 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCE
T ss_pred eEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEE
Confidence 44566666 999999999999999 699999999999999999887653 677999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEEccCCCc----cccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEE
Q 001343 414 WSPDGNYVGVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1096)
Q Consensus 414 ~spd~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~ 488 (1096)
|+|+|++|++|+.|+.|++||+.+... ......+.+|.+.|.++.|+|++.. .|++|+.|++|++|| .+++.+.
T Consensus 116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEE
T ss_pred ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEE
Confidence 999999999999999999999975421 1222357899999999999998654 699999999999999 8888888
Q ss_pred Ee-----eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC-CCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCC
Q 001343 489 NF-----EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 489 ~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
.+ .+|...|.++++++. ++.+|++|+.||+|++||++. ......+..|...|.+++|+|+++++++++.
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---- 269 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD---- 269 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----
T ss_pred EeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----
Confidence 77 689999999999753 567999999999999999984 4667788899999999999999999999987
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCc------cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeec--CCCCCCccE
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRK------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA--EGGLPNLPR 634 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~ 634 (1096)
|+.|++||+++++.+..+..+.. ..+.+++|+|+++++++|+.||.|++||...++.+..+.. ..+...|.+
T Consensus 270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349 (380)
T ss_dssp SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence 99999999999999988876533 1378899999999999999999999999999988877632 234458999
Q ss_pred EEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 635 LRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 635 ~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
++|+|+|.+|++|+.|+.|++|++...
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 999999999999999999999998655
No 20
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.3e-38 Score=359.15 Aligned_cols=246 Identities=20% Similarity=0.322 Sum_probs=231.5
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+.+|.+.|++++|+|++.+|++|+.||+|++||+.+++... .+.+|.+.|++++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 67899999999999999999999999999999999988766 6889999999999999999 899999999999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
.+++++..+.+|...|.+++|+| ++.+|++|+.||+|++||++++.....+..|...|.++.+++++.++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 88899999999999999999987 5689999999999999999999999999999999999999999999999997
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC--------------------CCEEEEEEcCCeEEEEeCCCCeEE
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT--------------------QNHFLAVGEDSQIKFWDMDNVNIL 620 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1096)
++.|++||+.+++....+.+|.. .+.+++|+|+ +.++++|+.|+.|++||+.++..+
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred --CCeEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 99999999999999999999887 8999999996 678999999999999999999999
Q ss_pred EEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
..+.+|.. .|.+++|+|++.+|++++.|+.|++||+.++
T Consensus 332 ~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 332 MTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370 (410)
T ss_dssp EEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred EEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 99988765 8999999999999999999999999998654
No 21
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4e-38 Score=351.84 Aligned_cols=292 Identities=15% Similarity=0.168 Sum_probs=239.3
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeC------CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSS------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
.|...|++|+|||||+ +||+|+. |+.|++|+..++...... .....+|...|.+++|+
T Consensus 40 ~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~---------------~~~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESL---------------CTAGVQTEAGVTDVAWV 103 (357)
T ss_dssp CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGG---------------CSEEEECSSCEEEEEEE
T ss_pred cccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeE---------------ecccCCCCCCEEEEEEc
Confidence 4999999999999999 7999987 678999998877654321 01245689999999999
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCccccc-eeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCC
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~ 493 (1096)
|++++| +++.||+|+|||+.+++..... ....+|.+.|++++|+|+++ +|++|+.|++|++|| .+++++..+.+|
T Consensus 104 ~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h 180 (357)
T 4g56_B 104 SEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAH 180 (357)
T ss_dssp TTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 998655 6788999999999988654322 23558999999999999999 899999999999999 889999999999
Q ss_pred CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe--CCCCcEEEEEEcCCC-CEEEEEeeccCCCCeEEEEe
Q 001343 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWN 570 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~~-~~l~~~~~~~~~~~~i~iwd 570 (1096)
...|++++|++.++ .++++++.||+|++||+++++....+. .+...+.+++|+|++ .++++++. ++.|++||
T Consensus 181 ~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~wd 255 (357)
T 4g56_B 181 SSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLVN 255 (357)
T ss_dssp SSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEEE
T ss_pred CCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEEE
Confidence 99999999987543 478999999999999999887765443 455579999999985 56777776 89999999
Q ss_pred CCCCeeeEEEcCcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC-CCCEEEEEE
Q 001343 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTT 648 (1096)
Q Consensus 571 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 648 (1096)
+++++.++.+.+|.. .|.+++|+|++ ++|++|+.|++|+|||+++++.+..+ .| ...|++++|+| ++.+|++++
T Consensus 256 ~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H--~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 256 IKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SH--RDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp SSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CC--SSCEEEEEECSSSTTEEEEEE
T ss_pred CCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CC--CCCEEEEEEeCCCCCEEEEEc
Confidence 999999999999987 89999999987 57889999999999999999887765 33 44899999998 899999999
Q ss_pred CCCcEEEEEcCCC
Q 001343 649 ADNGFKILANAIG 661 (1096)
Q Consensus 649 ~dg~i~iwd~~~~ 661 (1096)
.||.|++|++.+.
T Consensus 332 ~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 332 WDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEEECC--
T ss_pred CCCeEEEEECCCC
Confidence 9999999999765
No 22
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=341.63 Aligned_cols=248 Identities=14% Similarity=0.272 Sum_probs=226.9
Q ss_pred cccCCCCEEEEEEcCC----CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcE
Q 001343 402 FKDVPISVSRVAWSPD----GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i 477 (1096)
+.+|.+.|.+++|+|+ +.+|++|+.|++|+||++.+++.. ....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-LQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-eeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 5679999999999985 679999999999999999876432 2235789999999999999999 89999999999
Q ss_pred EEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEE
Q 001343 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1096)
Q Consensus 478 ~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 556 (1096)
++|| .+++.+..+..|...+.+++|+| ++++|++++.||.|++|++++......+..+...+.+++|+|++++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 9999 88999999999999999999977 67899999999999999999999998999999999999999999999999
Q ss_pred eeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEE
Q 001343 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1096)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1096)
+. ++.|++||+++++.+..+.+|.. .+.+++|+|++++|++++.|+.|++||+.+++....+..|.. .|.+++
T Consensus 183 ~~----dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~ 255 (321)
T 3ow8_A 183 AI----DGIINIFDIATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS--WVLNVA 255 (321)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCSS-CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS--CEEEEE
T ss_pred cC----CCeEEEEECCCCcEEEEEcccCC-ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC--ceEEEE
Confidence 87 99999999999999999999887 899999999999999999999999999999999988887765 899999
Q ss_pred EeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 637 FSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
|+|++.+|++++.|+.|++||+.++
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~~ 280 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGTR 280 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTT
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCC
Confidence 9999999999999999999998765
No 23
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=345.19 Aligned_cols=300 Identities=17% Similarity=0.247 Sum_probs=247.8
Q ss_pred ceEEeec-CCC-ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEE
Q 001343 336 TVAVSLH-QGS-TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1096)
Q Consensus 336 ~~~~~l~-h~~-~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1096)
.++.++. |.+ .|++++|+|+|+ +||+|+.|++|+|||+.++..... .....+|...|.+++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~~ 68 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKVA 68 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEEE
T ss_pred EEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEEE
Confidence 3455665 877 999999999999 699999999999999987754321 012468999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC---ceEEE
Q 001343 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RKLFN 489 (1096)
Q Consensus 414 ~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~---~~~~~ 489 (1096)
|+|+|++||+|+.|++|++||+..+.. .....+.+|.+.|.+++|+|+++ +|++|+.|++|++|| ..+ .++..
T Consensus 69 ~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~ 145 (345)
T 3fm0_A 69 WSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSV 145 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEE
Confidence 999999999999999999999987642 22336889999999999999999 899999999999999 554 34667
Q ss_pred eeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe--eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEE
Q 001343 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1096)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~ 567 (1096)
+.+|...|.+++|+| ++.+|++++.|++|++||.+.... ...+..|...|.+++|+|+|++|++++. |+.|+
T Consensus 146 ~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~ 219 (345)
T 3fm0_A 146 LNSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVR 219 (345)
T ss_dssp ECCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEE
T ss_pred ecCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEE
Confidence 889999999999987 568999999999999999987653 3567888899999999999999999997 99999
Q ss_pred EEeCCC---------------CeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe----EE---EEeec
Q 001343 568 EWNESE---------------GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN----IL---TSTDA 625 (1096)
Q Consensus 568 iwd~~~---------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~---~~~~~ 625 (1096)
+|+... .+++..+.+.+...+..++|+|++..+++++.|+.|++|+...+. .. .....
T Consensus 220 iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 299 (345)
T 3fm0_A 220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLH 299 (345)
T ss_dssp EEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEET
T ss_pred EeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeec
Confidence 999632 234556666444589999999999999999999999999987542 11 11112
Q ss_pred CCCCCCccEEEEeCCC-CEEEEEECCCcEEEEEcCCC
Q 001343 626 EGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 626 ~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~ 661 (1096)
..|...|++++|+|++ .+|++++.||.|++|++.++
T Consensus 300 ~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 300 QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp TSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred ccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 2344589999999987 59999999999999999876
No 24
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=344.51 Aligned_cols=296 Identities=14% Similarity=0.147 Sum_probs=239.2
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCc-cccccccccCCCCEEEEEEcCCCCEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSL-PFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
|...|.+++|+|||+ +|++|+ |+++++||.... +|+...... .........|...|.+++|+|++ .|
T Consensus 29 ~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l 96 (344)
T 4gqb_B 29 MERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLW---------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GI 96 (344)
T ss_dssp CCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEE---------EESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred ccCCEEEEEECCCCC-EEEEEe-CCceEEeeceee---------eeccccccCCcceeeeeeccCCCEEEEEEeCCC-eE
Confidence 667899999999999 688776 888999984321 111000000 00011133467789999999985 78
Q ss_pred EEEECCCeEEEEEccCCCccccc-eeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEE
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~-~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~ 499 (1096)
++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+++ +|++|+.|++|++|| .+++++..+.+|...|++
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~ 174 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC 174 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence 89999999999999998776533 23568999999999999999 899999999999999 899999999999999999
Q ss_pred EEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe--CCCCcEEEEEEcCCC-CEEEEEeeccCCCCeEEEEeCCCCee
Q 001343 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGTI 576 (1096)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~~-~~l~~~~~~~~~~~~i~iwd~~~~~~ 576 (1096)
++|++.+. .+|++++.||+|++||+++++....+. .+...+.+++|+|++ +++++++. ++.|++||+++++.
T Consensus 175 ~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 175 VAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTSC 249 (344)
T ss_dssp EEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--C
T ss_pred EEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCcE
Confidence 99987532 588999999999999999988877654 445579999999954 56777776 99999999999999
Q ss_pred eEEEcCcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCC-EEEEEECCCcEE
Q 001343 577 KRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFK 654 (1096)
Q Consensus 577 ~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~ 654 (1096)
+..+.+|.. .|.+++|+|++ ++|++|+.|++|++||+.+++.+. +..| ...|++++|+|++. +|++++.|++|+
T Consensus 250 ~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H--~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 250 VLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH--RDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp CEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC--SSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC--CCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 999999988 89999999998 578999999999999999987654 4444 44899999999875 678999999999
Q ss_pred EEEcCCC
Q 001343 655 ILANAIG 661 (1096)
Q Consensus 655 iwd~~~~ 661 (1096)
+|++.+.
T Consensus 326 ~w~v~~~ 332 (344)
T 4gqb_B 326 HHVVPTE 332 (344)
T ss_dssp EEECCC-
T ss_pred EEECCCC
Confidence 9999764
No 25
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.3e-37 Score=341.05 Aligned_cols=248 Identities=16% Similarity=0.214 Sum_probs=226.7
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
.+.+|.+.|.+++|+||+++|++|+.||+|++||+.+++.+. .+..|...|.+++|+|+++ +|++|+.|+.|++|
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw 124 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEE
Confidence 378899999999999999999999999999999999887665 5778999999999999999 89999999999999
Q ss_pred E-cCC----ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 481 E-LSG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 481 d-~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
| .++ .....+.+|.+.|.++.|.+. + .+++++.||+|++||+++++....+..|...|.+++|+|+++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDD--N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEET--T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCC--C-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 9 544 355678899999999999763 3 5899999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEE
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1096)
++. ++.|++||++++..+..+.+|.. .+.+++|+|++++|++|+.||.|++||+++++.+..+........|.++
T Consensus 202 g~~----d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 202 GAC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp EET----TSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred EeC----CCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE
Confidence 987 99999999999999999999987 8999999999999999999999999999999888877655555579999
Q ss_pred EEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 636 RFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 636 ~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+|+|++++|++|+.|+.|++||+.++
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EECCCCCEEEEECCCCeEEEEEcccC
Confidence 99999999999999999999998654
No 26
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1e-36 Score=334.96 Aligned_cols=291 Identities=18% Similarity=0.301 Sum_probs=258.0
Q ss_pred ceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE
Q 001343 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1096)
Q Consensus 336 ~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1096)
.+..++. |...|++++|+|+|+ +||+|+.||.|+||++.+++.... +.+|...|.+++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~ 73 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAW 73 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEE
Confidence 3445554 999999999999999 799999999999999998876643 6789999999999
Q ss_pred cCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCC
Q 001343 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1096)
Q Consensus 415 spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~ 493 (1096)
+|++++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|+.|++|| .+++.+..+..|
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred cCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 9999999999999999999999987766 5789999999999999999 899999999999999 889999999999
Q ss_pred CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe-CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC
Q 001343 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~ 572 (1096)
..+|.+++|++ ++.++++++.||.|++||+++.+....+. .+...+..++|+|+++++++++. ++.|++||+.
T Consensus 149 ~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~ 222 (312)
T 4ery_A 149 SDPVSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYS 222 (312)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETT
T ss_pred CCcEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECC
Confidence 99999999976 66899999999999999999888776654 44558999999999999999987 9999999999
Q ss_pred CCeeeEEEcCcCccc--eEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEE--
Q 001343 573 EGTIKRTYAGFRKKS--NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-- 648 (1096)
Q Consensus 573 ~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-- 648 (1096)
+++.+..+.+|.... +......+++.++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|+++++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTENIIASAALE 300 (312)
T ss_dssp TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSSEEEEEECT
T ss_pred CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCCceEEEEcc
Confidence 999999998886532 22223346788999999999999999999999999987765 899999999999999997
Q ss_pred CCCcEEEEEcC
Q 001343 649 ADNGFKILANA 659 (1096)
Q Consensus 649 ~dg~i~iwd~~ 659 (1096)
.|+.|++|+..
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999863
No 27
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-37 Score=353.57 Aligned_cols=357 Identities=13% Similarity=0.197 Sum_probs=283.6
Q ss_pred EEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEec----CCCCe------eecccceeecccccCcccc-ccccccCC
Q 001343 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWEL----AMRDR------LVSKPFKIWDMAACSLPFQ-ASIFKDVP 406 (1096)
Q Consensus 338 ~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~----~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~h~ 406 (1096)
.....|.+.|++++|+|+|+.+||+|+.||.|+|||+ .+++. ... +. .++. .....+|.
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~ 108 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAE--LR--------HPFALSASSGKTT 108 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEE--EE--------CCCCCC------C
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccc--cc--------ccccccccccCCC
Confidence 3344578999999999999856999999999999999 88773 211 00 0000 00123478
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~ 485 (1096)
+.|.+++|+|++++|++|+.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|| .+++
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGT 182 (425)
T ss_dssp BCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTE
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCc
Confidence 8999999999999999999999999999 4445444 5778999999999999999 899999999999999 8899
Q ss_pred eEEEeeCCCCC---------------eEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCC
Q 001343 486 KLFNFEGHEAP---------------VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550 (1096)
Q Consensus 486 ~~~~~~~~~~~---------------v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~ 550 (1096)
.+..+..+... +.+++|++. ..+++++.||.|++||+++......+..+...|.+++|+|++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 259 (425)
T 1r5m_A 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN 259 (425)
T ss_dssp EEEEECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred EEEEeeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence 99999888777 899999873 368999999999999999998888888999999999999999
Q ss_pred CEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCC
Q 001343 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1096)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1096)
+++++++. ++.|++||+.+++.+..+.+|.. .+.+++|+|++ .+++++.|+.|++||+.+++.+..+..+..
T Consensus 260 ~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-- 331 (425)
T 1r5m_A 260 KLLLSASD----DGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV-- 331 (425)
T ss_dssp TEEEEEET----TSCEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--
T ss_pred CEEEEEcC----CCEEEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--
Confidence 99999986 99999999999999999988877 89999999999 999999999999999999999998887655
Q ss_pred CccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCc
Q 001343 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710 (1096)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~ 710 (1096)
.|.+++|+|++++|++++.||.|++|++.++......+...
T Consensus 332 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~--------------------------------------- 372 (425)
T 1r5m_A 332 PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGN--------------------------------------- 372 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----------------------------------------------
T ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecc---------------------------------------
Confidence 89999999999999999999999999997652221111111
Q ss_pred CCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcc--cEEEEEEecCCceEEEeecCCeE
Q 001343 711 PSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSS--KVVRLLYTNSAVGLLALGSNGVQ 788 (1096)
Q Consensus 711 ~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~--~i~~l~~s~~~~~l~~~~~dg~v 788 (1096)
.++.+..+. .. ....+.+ |.. .|.+++|+|+++.|++++.||.|
T Consensus 373 -----------------------~~~~~~~~~-------~~-~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i 418 (425)
T 1r5m_A 373 -----------------------RDGILNPLP-------IP-LYASYQS---SQDNDYIFDLSWNCAGNKISVAYSLQEG 418 (425)
T ss_dssp -----------------------------CEE-------CC-EEEEECC---TTCCCCEEEEEECTTSSEEEEEESSSCC
T ss_pred -----------------------cccccCccc-------ch-hhhhhcC---cccCCceEEEEccCCCceEEEEecCceE
Confidence 011111111 11 1223444 655 99999999999999999999999
Q ss_pred EEeecc
Q 001343 789 KLWKWH 794 (1096)
Q Consensus 789 ~vw~~~ 794 (1096)
++|+++
T Consensus 419 ~iw~~~ 424 (425)
T 1r5m_A 419 SVVAIP 424 (425)
T ss_dssp EEEECC
T ss_pred EEEeec
Confidence 999974
No 28
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-36 Score=345.75 Aligned_cols=307 Identities=17% Similarity=0.254 Sum_probs=251.2
Q ss_pred eEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC
Q 001343 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1096)
Q Consensus 337 ~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1096)
+...+.|.+.|+|++|||+|+ +||+|+ ++.++||++.+++.+.......-.. .............+...|.+++|+|
T Consensus 57 ~~~~~~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 57 LHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp EEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECT
T ss_pred eEEecCCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEECC
Confidence 455678999999999999999 688875 7899999999988764311000000 0000000001113445699999999
Q ss_pred CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC
Q 001343 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1096)
Q Consensus 417 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~ 495 (1096)
||++||+|+.|+.|++||+.+++.+. .+.+|...|++++|+|+++ .|++|+.|++|++|| .++++...+. +..
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~ 207 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IED 207 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCC
Confidence 99999999999999999999887655 5789999999999999999 899999999999999 8888877776 566
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE-------eCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
.+.+++++|. ++.+|++|+.||.|++||++++.....+ ..|...|.+++|+|++++|++++. ++.|++
T Consensus 208 ~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~ 282 (393)
T 1erj_A 208 GVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKL 282 (393)
T ss_dssp CEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEE
T ss_pred CcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEE
Confidence 7999999763 5689999999999999999988776655 467789999999999999999987 999999
Q ss_pred EeCCCC------------eeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEE
Q 001343 569 WNESEG------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1096)
Q Consensus 569 wd~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1096)
||+.+. .+...+.+|.. .+.+++|+|++.+|++|+.|+.|++||..+++.+..+.+|.. .|.+++
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--~v~~v~ 359 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISVA 359 (393)
T ss_dssp EEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEE
T ss_pred EECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--CEEEEE
Confidence 998753 34567778877 889999999999999999999999999999999999988765 899999
Q ss_pred EeC------CCCEEEEEECCCcEEEEEcCC
Q 001343 637 FSK------EGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 637 ~s~------~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
|++ ++++|++|+.||.|++|++..
T Consensus 360 ~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 360 VANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred ecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 986 688999999999999999854
No 29
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2e-36 Score=330.41 Aligned_cols=248 Identities=18% Similarity=0.311 Sum_probs=225.8
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
.+.+|.+.|.+++|+|++++|++|+.||+|++||+.++..++ .+.+|..+|.+++|+|+++ +|++|+.|++|++|
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEE
Confidence 488899999999999999999999999999999999987666 5778999999999999999 89999999999999
Q ss_pred E-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe-eeEEeCCCCcEEEEEEcC-CCCEEEEEe
Q 001343 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSA-DGSRLFSCG 557 (1096)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~-~~~~l~~~~ 557 (1096)
| .+++++..+.+|...|.+++|+| ++.+|++|+.||+|++||+++... ...+..|...|.+++|+| ++..+++++
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 9 89999999999999999999987 568999999999999999987744 456788999999999999 678999998
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC--CCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEE
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1096)
. |+.|++||+.++.....+..+....+..+.|.| ++.++++++.|+.|++||+.+++.+..+..|.. .|.++
T Consensus 161 ~----D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~~ 234 (304)
T 2ynn_A 161 L----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFA 234 (304)
T ss_dssp T----TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEE
T ss_pred C----CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEEEE
Confidence 7 999999999988877777665555788888886 678999999999999999999999999988765 89999
Q ss_pred EEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 636 RFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 636 ~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+|+|++.+|++++.||.|++||+.++
T Consensus 235 ~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 235 VFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999999999999998766
No 30
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.6e-36 Score=337.90 Aligned_cols=299 Identities=17% Similarity=0.267 Sum_probs=243.9
Q ss_pred eEEeec-CCCceEEEEE-----cC-CCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCE
Q 001343 337 VAVSLH-QGSTVISMDF-----HP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1096)
Q Consensus 337 ~~~~l~-h~~~V~~v~f-----sp-~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (1096)
+..++. |.+.|++++| +| +++ +||+|+.|++|+|||+.+++..... ......+.+|...|
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~------------~~~~~~l~~h~~~V 79 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYF------------GIPHKALTGHNHFV 79 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBS------------EEEEEEECCCSSCE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccccc------------ccccchhccCCCce
Confidence 344554 9999999999 77 888 7999999999999999765432100 00112478999999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEE
Q 001343 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN 489 (1096)
Q Consensus 410 ~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~ 489 (1096)
.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||..+.....
T Consensus 80 ~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~~~~~~ 154 (343)
T 2xzm_R 80 SDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILGECKFS 154 (343)
T ss_dssp EEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSSCEEEE
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccCCceee
Confidence 999999999999999999999999999987765 5789999999999999999 89999999999999955665555
Q ss_pred ee---CCCCCeEEEEeeecCC--------CcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 490 FE---GHEAPVYSICPHHKEN--------IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 490 ~~---~~~~~v~~~~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
.. +|...|.+++|+|... +.++++++.||+|++||. .......+..|...|.+++|+|+|++|++++.
T Consensus 155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~ 233 (343)
T 2xzm_R 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK 233 (343)
T ss_dssp CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcC
Confidence 44 7899999999987532 268999999999999994 45566678889999999999999999999997
Q ss_pred ccCCCCeEEEEeCC-CCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEE--EeecC---------
Q 001343 559 SKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT--STDAE--------- 626 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~--------- 626 (1096)
++.|++||+. .......+.. .. .+.+++|+|++.++++ +.|+.|++|++.+++... .+...
T Consensus 234 ----dg~v~iwd~~~~~~~~~~~~~-~~-~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (343)
T 2xzm_R 234 ----DKKLLIWDILNLTYPQREFDA-GS-TINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK 306 (343)
T ss_dssp ----TCEEEEEESSCCSSCSEEEEC-SS-CEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred ----CCeEEEEECCCCcccceeecC-CC-cEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence 9999999994 4444455432 22 6899999999887765 467889999998766543 33311
Q ss_pred CCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 627 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.+...|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 307 ~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 307 GKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 34457999999999999999999999999998665
No 31
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-36 Score=333.80 Aligned_cols=294 Identities=16% Similarity=0.225 Sum_probs=232.3
Q ss_pred ceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCcccccccc-c-cCCCCEEEE
Q 001343 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF-K-DVPISVSRV 412 (1096)
Q Consensus 336 ~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h~~~V~~l 412 (1096)
+++.++. |.+.|++++|+|+ +||+|+.|++|+|||+.++..... ..+ . +|...|.++
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~-----------------~~~~~~~h~~~v~~v 64 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLI-----------------DVLDETAHKKAIRSV 64 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEE-----------------EEECTTCCCSCEEEE
T ss_pred ccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEE-----------------EEEecCCccCCEEEE
Confidence 3455555 9999999999997 699999999999999987542110 012 3 399999999
Q ss_pred EEcCCCCEEEEEECCCeEEEEEccCCC----ccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEc-CC---
Q 001343 413 AWSPDGNYVGVAFTKHLIQLYSYAGSN----DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SG--- 484 (1096)
Q Consensus 413 ~~spd~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~-~~--- 484 (1096)
+|+|++++||+|+.|++|++||+.... .......+.+|.+.|++++|+|+++ +|++|+.|++|++||. ..
T Consensus 65 ~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCC
T ss_pred EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCC
Confidence 999999999999999999999986432 1222336789999999999999999 8999999999999993 32
Q ss_pred -ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC--CeeeEEeCCCCcEEEEEEcCC--CCEEEEEeec
Q 001343 485 -RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM--GSRVDYDAPGHWCTTMLYSAD--GSRLFSCGTS 559 (1096)
Q Consensus 485 -~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~--~~~l~~~~~~ 559 (1096)
+++..+.+|...|.+++|+| ++.+|++++.||+|++||.... .....+..|...|.+++|+|+ +..+++++.
T Consensus 143 ~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~- 219 (330)
T 2hes_X 143 YECISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD- 219 (330)
T ss_dssp CEEEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET-
T ss_pred eEEEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC-
Confidence 45778899999999999987 5689999999999999998766 456678889999999999998 678999887
Q ss_pred cCCCCeEEEEeCCCC--------eeeEEEcC-cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeE--EEEeecCCC
Q 001343 560 KDGDSFLVEWNESEG--------TIKRTYAG-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI--LTSTDAEGG 628 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~--------~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~ 628 (1096)
|+.|++||+.++ .....+.+ |.. .+.+++|++++ .|++++.||.|++|+..+++. .... ...+
T Consensus 220 ---D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h 293 (330)
T 2hes_X 220 ---DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR-QVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCH 293 (330)
T ss_dssp ---TSCEEEEEEEEECTTSCEEEEEEEECCSCCSS-CEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTT
T ss_pred ---CCeEEEEEecCCCccccceeEEeeeccccccc-ceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-cccc
Confidence 999999998764 44555555 544 89999999654 899999999999999988743 2222 2233
Q ss_pred CC-CccEEEEeC--CCCEEEEEECCCcEEEEEcCC
Q 001343 629 LP-NLPRLRFSK--EGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 629 ~~-~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
.. .|.+++|+| ++.+|++++.||.|++|++..
T Consensus 294 ~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 294 GVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 33 799999999 789999999999999999854
No 32
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.7e-36 Score=334.81 Aligned_cols=248 Identities=15% Similarity=0.170 Sum_probs=225.0
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+.+|.+.|.+++|+|++++||+|+.||+|++||..+++... .+..|...|.+++|+|++. .|++|+.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 78899999999999999999999999999999998877655 5677999999999999999 899999999999999
Q ss_pred -cCC------ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcC--CCCE
Q 001343 482 -LSG------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA--DGSR 552 (1096)
Q Consensus 482 -~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~--~~~~ 552 (1096)
... .....+.+|...|.+++|++ ++..|++++.||+|++||+++++....+..|...|.+++++| ++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 332 34567788999999999977 567999999999999999999999999999999999999987 5789
Q ss_pred EEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCc
Q 001343 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1096)
+++++. |+.|++||+++++.+..+.+|.. .+.+++|+|++..|++++.|++|++||++.++.+..+..+.....+
T Consensus 213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 213 FVSGGC----DKKAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA 287 (354)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence 999987 99999999999999999999987 8999999999999999999999999999999888777765554578
Q ss_pred cEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 633 PRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 633 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.+++|+|++.+|++++.|+.|++||+.++
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 316 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKG 316 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence 89999999999999999999999998655
No 33
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-36 Score=350.28 Aligned_cols=348 Identities=11% Similarity=0.153 Sum_probs=277.7
Q ss_pred ccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEEc----cCCCc------cccce-eec------ccccCEEEEEEecCCC
Q 001343 403 KDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSY----AGSND------LRQHS-QID------AHVGAVNDLAFAYPNK 464 (1096)
Q Consensus 403 ~~h~~~V~~l~~spd~~-~l~s~~~dg~i~vwd~----~~~~~------~~~~~-~l~------~h~~~v~~l~~s~d~~ 464 (1096)
..|.+.|.+++|+|+++ +||+|+.||.|++||+ .+++. ...+. .+. +|.+.|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34678999999999999 9999999999999999 88772 22110 111 2688999999999999
Q ss_pred cEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCc----
Q 001343 465 LLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW---- 540 (1096)
Q Consensus 465 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---- 540 (1096)
+|++++.||.|++||.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+.+++....+..+...
T Consensus 122 --~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 197 (425)
T 1r5m_A 122 --SIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI 197 (425)
T ss_dssp --EEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred --EEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence 89999999999999988899999999999999999977 6689999999999999999998888887777666
Q ss_pred -----------EEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeE
Q 001343 541 -----------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1096)
Q Consensus 541 -----------i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 609 (1096)
+.+++|++++. +++++. ++.|++||+.+++.+..+..|.. .+.+++|+|++++|++++.||.|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~g~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i 271 (425)
T 1r5m_A 198 NAENHSGDGSLGVDVEWVDDDK-FVIPGP----KGAIFVYQITEKTPTGKLIGHHG-PISVLEFNDTNKLLLSASDDGTL 271 (425)
T ss_dssp --------CCCBSCCEEEETTE-EEEECG----GGCEEEEETTCSSCSEEECCCSS-CEEEEEEETTTTEEEEEETTSCE
T ss_pred eeccccCCcceeeEEEEcCCCE-EEEEcC----CCeEEEEEcCCCceeeeeccCCC-ceEEEEECCCCCEEEEEcCCCEE
Confidence 89999999865 666665 89999999999999999998877 89999999999999999999999
Q ss_pred EEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCC
Q 001343 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA 689 (1096)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 689 (1096)
++||+.+++.+..+..+.. .|.+++|+|++ ++++++.|+.|++||+.++ +...
T Consensus 272 ~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~----------------------- 324 (425)
T 1r5m_A 272 RIWHGGNGNSQNCFYGHSQ--SIVSASWVGDD-KVISCSMDGSVRLWSLKQN-TLLA----------------------- 324 (425)
T ss_dssp EEECSSSBSCSEEECCCSS--CEEEEEEETTT-EEEEEETTSEEEEEETTTT-EEEE-----------------------
T ss_pred EEEECCCCccceEecCCCc--cEEEEEECCCC-EEEEEeCCCcEEEEECCCC-cEeE-----------------------
Confidence 9999999988888876654 89999999999 9999999999999998655 1100
Q ss_pred CeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEE
Q 001343 690 SSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVR 769 (1096)
Q Consensus 690 ~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 769 (1096)
.+.+ |...|.+
T Consensus 325 ------------------------------------------------------------------~~~~---~~~~i~~ 335 (425)
T 1r5m_A 325 ------------------------------------------------------------------LSIV---DGVPIFA 335 (425)
T ss_dssp ------------------------------------------------------------------EEEC---TTCCEEE
T ss_pred ------------------------------------------------------------------eccc---CCccEEE
Confidence 1111 6678889
Q ss_pred EEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEe
Q 001343 770 LLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA 849 (1096)
Q Consensus 770 l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~ 849 (1096)
++|+|++..+++++.||.|++|++.. +......+ . ..
T Consensus 336 ~~~s~~~~~l~~~~~dg~i~i~~~~~----------------------~~~~~~~~------------~---------~~ 372 (425)
T 1r5m_A 336 GRISQDGQKYAVAFMDGQVNVYDLKK----------------------LNSKSRSL------------Y---------GN 372 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECHH----------------------HHC-----------------------------
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCC----------------------Cccceeee------------e---------cc
Confidence 99999999888888899999998632 11000001 0 00
Q ss_pred cCCeEEEEEcccceEEEeecCCCC--CeeEEEEecCCCcEEEEeeCCCeEEEEeec
Q 001343 850 TGGKISLFNMMTFKVMTTFMSPPP--ASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (1096)
Q Consensus 850 ~dg~v~iwd~~~~~~~~~~~~h~~--~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~ 903 (1096)
.++ ++.......+..+..|.. .|++++|+| ++++|++++.||.|++|++.
T Consensus 373 ~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 373 RDG---ILNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ---------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCCEEEECC
T ss_pred ccc---ccCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceEEEEeec
Confidence 112 223334457788888976 999999999 89999999999999999985
No 34
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.2e-37 Score=342.79 Aligned_cols=247 Identities=15% Similarity=0.177 Sum_probs=201.1
Q ss_pred CcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCC
Q 001343 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1096)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~d 842 (1096)
|...|.+++|+|++. +++++.||+|++|++....... .......+ |...|.+++|+|+
T Consensus 93 ~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~-------------------~~~~~~~~--h~~~V~~v~~spd 150 (357)
T 4g56_B 93 TEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLL-------------------VNKFAKYE--HDDIVKTLSVFSD 150 (357)
T ss_dssp CSSCEEEEEEETTTE-EEEEETTSCEEEC--------C-------------------CCCEEECC--CSSCEEEEEECSS
T ss_pred CCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeE-------------------EEeeccCC--CCCCEEEEEECCC
Confidence 778899999999986 7778889999999975422100 01111223 8999999999999
Q ss_pred CcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccce
Q 001343 843 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSV 921 (1096)
Q Consensus 843 g~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~ 921 (1096)
|++|++++ |+.|++||+.+++++..+.+|...|++++|++++..++++++.||+|++||+.+++
T Consensus 151 g~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~--------------- 215 (357)
T 4g56_B 151 GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK--------------- 215 (357)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS---------------
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCc---------------
Confidence 99999998 79999999999999999999999999999999333589999999999999998876
Q ss_pred eeecC--CCCCCCCCceEEEecCC-cEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCC-cEEEEEecC
Q 001343 922 TIHIP--AGKTPTGDTRVQFNADQ-VRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS-QLVFATFCD 996 (1096)
Q Consensus 922 ~~~~~--~~~~~~~v~~v~fs~dg-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg-~~la~~~~d 996 (1096)
++... ..+.. .+.+++|+|++ .+|++ +.|+.|++||+.+++++..+..+ ...|.+++|+|++ ++||+|+.|
T Consensus 216 ~~~~~~~~~~~~-~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~---~~~v~~l~~sp~~~~~lasgs~D 291 (357)
T 4g56_B 216 PATRIDFCASDT-IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH---SQNITGLAYSYHSSPFLASISED 291 (357)
T ss_dssp CBCBCCCTTCCS-CEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC---SSCEEEEEECSSSSCCEEEEETT
T ss_pred eeeeeeeccccc-cccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc---ceeEEEEEEcCCCCCEEEEEeCC
Confidence 22222 23333 78999999985 57777 68999999999999988888765 8899999999987 579999999
Q ss_pred CcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCCC
Q 001343 997 GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1063 (1096)
Q Consensus 997 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~ 1063 (1096)
++|+|||++++++...+. |...|+ +|+|+|.|+.+|++|+.||+|++|++.+..
T Consensus 292 ~~i~iwd~~~~~~~~~~~-----------H~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 292 CTVAVLDADFSEVFRDLS-----------HRDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp SCEEEECTTSCEEEEECC-----------CSSCEE--EEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CEEEEEECCCCcEeEECC-----------CCCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 999999999998766544 888999 699998678999999999999999997643
No 35
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=8e-36 Score=332.74 Aligned_cols=302 Identities=22% Similarity=0.303 Sum_probs=258.4
Q ss_pred CcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEE
Q 001343 334 PRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1096)
Q Consensus 334 ~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1096)
...+..+|. |.+.|++|+|+|++..+||||+.|++|+|||+.+++.... .+...+.+|...|.++
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~--------------~~~~~l~~h~~~V~~~ 92 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG--------------IPQRALRGHSHFVSDV 92 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE--------------EEEEEECCCSSCEEEE
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc--------------eeeEEEeCCCCCEEEE
Confidence 344556676 9999999999998544899999999999999987664321 1123478899999999
Q ss_pred EEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc-eEEEe
Q 001343 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLFNF 490 (1096)
Q Consensus 413 ~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~-~~~~~ 490 (1096)
+|+|++++|++|+.|+.|++|+...+.... ....+...+..+.+++++. .|++|+.|+.+++|| .... ....+
T Consensus 93 ~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~ 167 (340)
T 4aow_A 93 VISSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQD 167 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECS
T ss_pred EECCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEe
Confidence 999999999999999999999998876554 4567888999999999999 899999999999999 4333 34456
Q ss_pred eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEe
Q 001343 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1096)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd 570 (1096)
.+|...+..++|++.....++++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++. |+.|++||
T Consensus 168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd 243 (340)
T 4aow_A 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWD 243 (340)
T ss_dssp SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEE
T ss_pred ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEE
Confidence 78999999999988777788999999999999999999999999999999999999999999999987 99999999
Q ss_pred CCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeec-------CCCCCCccEEEEeCCCCE
Q 001343 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-------EGGLPNLPRLRFSKEGNL 643 (1096)
Q Consensus 571 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~ 643 (1096)
+.+++.+..+..+. .+..++|+|++. +++++.|+.|++||++++..+..+.. ..+...|++++|+|++++
T Consensus 244 ~~~~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 320 (340)
T 4aow_A 244 LNEGKHLYTLDGGD--IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320 (340)
T ss_dssp TTTTEEEEEEECSS--CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred eccCceeeeecCCc--eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence 99999999888764 688899999865 55666799999999999887776643 234558999999999999
Q ss_pred EEEEECCCcEEEEEcCCC
Q 001343 644 LAVTTADNGFKILANAIG 661 (1096)
Q Consensus 644 l~~~~~dg~i~iwd~~~~ 661 (1096)
|++|+.||.|++||+.+|
T Consensus 321 l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 321 LFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp EEEEETTSCEEEEEEEC-
T ss_pred EEEEeCCCEEEEEeCCCc
Confidence 999999999999999887
No 36
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-37 Score=355.29 Aligned_cols=366 Identities=14% Similarity=0.197 Sum_probs=276.5
Q ss_pred cCCCceEEEEEcCCCCcEEEEE----------eCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVG----------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg----------~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1096)
.+...|.+++|+|+|+.+||+| +.|+.|+|||+.+++.... .....|...|.+
T Consensus 10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-----------------~~~~~~~~~v~~ 72 (416)
T 2pm9_A 10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-----------------IASLQVDSKFND 72 (416)
T ss_dssp CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-----------------SCCCCCSSCEEE
T ss_pred hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-----------------EEEEecCCceEE
Confidence 3456799999999998689999 8899999999988763210 012358899999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEccCCCc-cccceeecccccCEEEEEEecC-CCcEEEEEEeCCCcEEEEE-cCCc---
Q 001343 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGR--- 485 (1096)
Q Consensus 412 l~~spd~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~l~~h~~~v~~l~~s~d-~~~~~l~s~s~d~~i~iwd-~~~~--- 485 (1096)
++|+|++++|++|+.||.|++||+.+... ......+.+|.+.|++++|+|+ +. +|++++.|+.|++|| .+++
T Consensus 73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCT
T ss_pred EEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccc
Confidence 99999999999999999999999987211 1122357889999999999998 66 899999999999999 6665
Q ss_pred ---eE---EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC------CCcEEEEEEcCCC-CE
Q 001343 486 ---KL---FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------GHWCTTMLYSADG-SR 552 (1096)
Q Consensus 486 ---~~---~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~~-~~ 552 (1096)
.. ..+.+|...|.+++|++.+ +.++++++.||.|++||+++.+....+..+ ...|.+++|+|++ .+
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTR 229 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTE
T ss_pred ccccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCE
Confidence 32 2346799999999998742 579999999999999999998888888776 6789999999997 57
Q ss_pred EEEEeeccCCCC---eEEEEeCCCC-eeeEEEc-CcCccceEEEEEeC-CCCEEEEEEcCCeEEEEeCCCCeEEEEeecC
Q 001343 553 LFSCGTSKDGDS---FLVEWNESEG-TIKRTYA-GFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1096)
Q Consensus 553 l~~~~~~~~~~~---~i~iwd~~~~-~~~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1096)
+++++. ++ .|++||++++ ..+..+. +|.. .+.+++|+| ++.+|++++.||.|++||+.+++.+..+..+
T Consensus 230 l~~~~~----d~~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~ 304 (416)
T 2pm9_A 230 VATATG----SDNDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR 304 (416)
T ss_dssp EEEEEC----CSSSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS
T ss_pred EEEEEC----CCCCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC
Confidence 777775 66 9999999986 6777777 7776 899999999 8999999999999999999999999999877
Q ss_pred CCCCCccEEEEeCCC-CEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEec
Q 001343 627 GGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1096)
Q Consensus 627 ~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~ 705 (1096)
.. .|.+++|+|++ .+|++++.|+.|++|++.+...... ..... .........+.+.+..++.........+
T Consensus 305 ~~--~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 376 (416)
T 2pm9_A 305 GN--WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD-EQETE---TKQQESETDFWNNVSREESKEKPSVFHL-- 376 (416)
T ss_dssp SS--CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSC-C-------------------------CCSCCCSSCC--
T ss_pred CC--ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcc-ccccc---ccccCCcccccccccccccccccccccc--
Confidence 65 89999999998 8999999999999999987632211 11100 0001111222222222221111111110
Q ss_pred cCCCcCCCccc--CCCCccCCCCCCccccCCCCCccceeee
Q 001343 706 SSPVRPSPIIN--GVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (1096)
Q Consensus 706 ~~~~~~~~~~~--~~~~~~s~d~~~l~s~~~dg~i~iw~~~ 744 (1096)
....... .....+++||+++++++.|+.|++|++.
T Consensus 377 ----~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 377 ----QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp ----CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred ----cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence 0000011 1245689999999999999999999986
No 37
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-36 Score=344.14 Aligned_cols=249 Identities=18% Similarity=0.210 Sum_probs=220.7
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN 136 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence 88999999999999999999999999999999999887665 5788999999999999999 899999999999999
Q ss_pred -cCC-------ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE-----eCCCCcEEEEEEcC
Q 001343 482 -LSG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-----DAPGHWCTTMLYSA 548 (1096)
Q Consensus 482 -~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~~s~ 548 (1096)
... .....+.+|.+.|.++.|.|.. +..|++|+.|++|++||+++++....+ ..|...|.++++++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ-ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS-SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCC-CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 432 2345678999999999998753 357999999999999999998887766 56777999999987
Q ss_pred -CCCEEEEEeeccCCCCeEEEEeCC-CCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC
Q 001343 549 -DGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1096)
Q Consensus 549 -~~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1096)
+++++++++. |+.|++||++ .++.+..+.+|.. .|.+++|+|++.+|++|+.||+|++||+.+++.+..+..+
T Consensus 216 ~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~ 290 (380)
T 3iz6_a 216 LNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHEG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE 290 (380)
T ss_dssp SSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCSS-CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcCC-CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc
Confidence 8889999987 9999999998 5678889999987 8999999999999999999999999999999998887654
Q ss_pred CC-----CCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 627 GG-----LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 627 ~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.. ...|.+++|+|+|++|++|+.||.|++||..++
T Consensus 291 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~ 330 (380)
T 3iz6_a 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA 330 (380)
T ss_dssp CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC
T ss_pred ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC
Confidence 32 224899999999999999999999999998665
No 38
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.3e-35 Score=323.15 Aligned_cols=247 Identities=19% Similarity=0.310 Sum_probs=220.3
Q ss_pred ccccCCCCEEEEEEcCCC-CEEEEEECCCeEEEEEccCCCcc--ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcE
Q 001343 401 IFKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~-~~l~s~~~dg~i~vwd~~~~~~~--~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i 477 (1096)
.+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 488999999999999965 89999999999999998753321 22346889999999999999999 89999999999
Q ss_pred EEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCC------C
Q 001343 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD------G 550 (1096)
Q Consensus 478 ~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~------~ 550 (1096)
++|| .+++.+..+.+|...|.+++|++ ++.+|++|+.||+|++||++ ......+..|...|.++.++|. +
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999 89999999999999999999976 66899999999999999986 4566778889999999999985 4
Q ss_pred CEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCC
Q 001343 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1096)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1096)
..+++++. ++.|++||+.+++....+.+|.. .+.+++|+|++++|++++.||.|++||+.+++.+..+..+.
T Consensus 167 ~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--- 238 (319)
T 3frx_A 167 VTIISAGN----DKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD--- 238 (319)
T ss_dssp CEEEEEET----TSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS---
T ss_pred cEEEEEeC----CCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC---
Confidence 47888887 99999999999999999999987 89999999999999999999999999999999998887643
Q ss_pred CccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.|.+++|+|++.++++++.+ .+++|++...
T Consensus 239 ~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp CEEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence 79999999999999988865 5999998654
No 39
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.1e-35 Score=320.29 Aligned_cols=250 Identities=21% Similarity=0.329 Sum_probs=225.8
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
.+.+|...|.+++|+|++++|++|+.||.|++|+..+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 478999999999999999999999999999999999887665 5789999999999999999 89999999999999
Q ss_pred E-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeec
Q 001343 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
| .+++++..+.+|...|.+++|+| ++.+|++|+.||.|++||+++++....+..|...|.+++|+|+++++++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY- 169 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 9 88999999999999999999977 5689999999999999999999998899999999999999999999999987
Q ss_pred cCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe-
Q 001343 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS- 638 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s- 638 (1096)
++.|++||+.+++.+..+.......+..++|+|+++++++++.||.|++||+.+++.+..+..+..........++
T Consensus 170 ---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 4ery_A 170 ---DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246 (312)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC
T ss_pred ---CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEe
Confidence 9999999999999888887666658899999999999999999999999999999999888877653333334444
Q ss_pred CCCCEEEEEECCCcEEEEEcCCC
Q 001343 639 KEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+++.+|++++.||.|++||+.++
T Consensus 247 ~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 247 TGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp SSSCEEEECCTTSCEEEEETTTC
T ss_pred CCCcEEEEECCCCEEEEEECCCc
Confidence 57889999999999999998665
No 40
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.9e-35 Score=327.66 Aligned_cols=285 Identities=14% Similarity=0.165 Sum_probs=245.1
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
|.++|.+++|+|||+ +++++..++.+.+|......... ...+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 567899999999999 68777777777666554433221 1346999999999999999999
Q ss_pred EEECCCeEEEEEccCCCccccceeec--ccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc--eEEEeeCCCCCe
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR--KLFNFEGHEAPV 497 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~--~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~--~~~~~~~~~~~v 497 (1096)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ +|++++.|+.|++|| .+++ ....+.+|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999877655444444 7999999999999999 899999999999999 6665 567788999999
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
.+++|++ ++.++++++.||.|++||+++.+....+..|...+.+++|+|+++++++++. ++.|++||+++++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 9999977 6689999999999999999999888888889999999999999999999987 999999999999988
Q ss_pred EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEE
Q 001343 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1096)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 657 (1096)
..+.. .. .+.+++|+|+++.+++++.++.|++||+.+++... +..+ ...|.+++|+|++++|++++.||.|++|+
T Consensus 219 ~~~~~-~~-~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 219 QQHDF-TS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEC-SS-CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeecC-CC-ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-EcCC--ccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 88753 33 68899999999999999999999999999887653 3333 34899999999999999999999999999
Q ss_pred cCCC
Q 001343 658 NAIG 661 (1096)
Q Consensus 658 ~~~~ 661 (1096)
+.++
T Consensus 294 ~~~~ 297 (337)
T 1gxr_A 294 TPYG 297 (337)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 8765
No 41
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.9e-35 Score=325.70 Aligned_cols=251 Identities=14% Similarity=0.217 Sum_probs=214.1
Q ss_pred ccccCCC-CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 401 IFKDVPI-SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 401 ~~~~h~~-~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
.+.+|.. .|.+++|+|+|++||+|+.|++|+|||+.++..........+|...|++++|+|+++ +|++|+.|++|++
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~i 87 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCI 87 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEE
Confidence 3678887 999999999999999999999999999998754433223468999999999999999 8999999999999
Q ss_pred EE-cCC--ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe---eeEEeCCCCcEEEEEEcCCCCEE
Q 001343 480 WE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSADGSRL 553 (1096)
Q Consensus 480 wd-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~~~~l 553 (1096)
|| ..+ +++..+.+|...|.+++|+| ++++|++|+.||+|++||++.... ...+..|...|.+++|+|++++|
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 165 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCE
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEE
Confidence 99 554 45788999999999999977 668999999999999999987643 34667888899999999999999
Q ss_pred EEEeeccCCCCeEEEEeCCCCe--eeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC--------------
Q 001343 554 FSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-------------- 617 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------------- 617 (1096)
++++. ++.|++||..++. ....+.+|.. .|.+++|+|++++|++++.|++|++|+....
T Consensus 166 ~s~s~----d~~i~~w~~~~~~~~~~~~~~~h~~-~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~ 240 (345)
T 3fm0_A 166 ASASY----DDTVKLYREEEDDWVCCATLEGHES-TVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS 240 (345)
T ss_dssp EEEET----TSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CE
T ss_pred EEEeC----CCcEEEEEecCCCEEEEEEecCCCC-ceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCc
Confidence 99987 9999999998875 4567888887 8999999999999999999999999996321
Q ss_pred -eEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 618 -NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 618 -~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
..+..+... +...|.+++|+|++..|++++.|+.|++|+...+
T Consensus 241 ~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 241 WKCICTLSGF-HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp EEEEEEECSS-CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred cceeEEecCC-CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 223333331 3348999999999999999999999999998654
No 42
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=325.43 Aligned_cols=246 Identities=15% Similarity=0.147 Sum_probs=202.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccC-------CCc-cccceeecccccCEEEEEEecCCCcEEEEEEeCCC
Q 001343 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG-------SND-LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~-------~~~-~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~ 475 (1096)
.|...|.+++|+|||++|++++ |+++++||... ... .........|...|.+++|+|++ .|++|+.||
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~---~l~~~s~dg 103 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER---GILVASDSG 103 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT---EEEEEETTS
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC---eEEEEECCC
Confidence 4677899999999999999887 66778876321 000 11111233467889999999986 588999999
Q ss_pred cEEEEE-cCCceEEE----eeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCC
Q 001343 476 LIKVWE-LSGRKLFN----FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550 (1096)
Q Consensus 476 ~i~iwd-~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~ 550 (1096)
+|++|| .+++.+.. +.+|...|++++|+| ++++|++|+.||+|++||+++++.+..+..|...|.+++|++++
T Consensus 104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp--dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~ 181 (344)
T 4gqb_B 104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLS--SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK 181 (344)
T ss_dssp EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSC
T ss_pred EEEEEeccCCCceeEeeccccCCCCCEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCC
Confidence 999999 77776543 458999999999977 67899999999999999999999999999999999999999998
Q ss_pred C-EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC-ccceEEEEEeCC-CCEEEEEEcCCeEEEEeCCCCeEEEEeecCC
Q 001343 551 S-RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTT-QNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (1096)
Q Consensus 551 ~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (1096)
. .+++++. |+.|++||+++++....+..+. ...+.+++|+|+ +.++++|+.||.|++||+++++.+..+..|.
T Consensus 182 ~~~l~s~s~----D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~ 257 (344)
T 4gqb_B 182 DSVFLSCSE----DNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHS 257 (344)
T ss_dssp TTEEEEEET----TSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCS
T ss_pred CCceeeecc----ccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCC
Confidence 5 6778876 9999999999999888875432 236788999985 5688899999999999999999999998876
Q ss_pred CCCCccEEEEeCCC-CEEEEEECCCcEEEEEcCCC
Q 001343 628 GLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 628 ~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~ 661 (1096)
. .|++++|+|++ ++|++++.|++|++||+.++
T Consensus 258 ~--~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 258 Q--CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp S--CEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred C--CEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence 5 89999999998 68999999999999997554
No 43
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=6.9e-34 Score=364.36 Aligned_cols=515 Identities=14% Similarity=0.113 Sum_probs=368.6
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
+...+.+.+|||+ .+|.++. +.|.+|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~---~iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD---RIIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT---EEEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC---EEEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 4567899999964 4665544 799999998876542 667999999999999999999
Q ss_pred EEECC------CeEEEEEccCCCccccceeecccccCE-------EEEEEecCCCcEEEEEEeCC------CcEEEEEcC
Q 001343 423 VAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAV-------NDLAFAYPNKLLCVVTCGDD------KLIKVWELS 483 (1096)
Q Consensus 423 s~~~d------g~i~vwd~~~~~~~~~~~~l~~h~~~v-------~~l~~s~d~~~~~l~s~s~d------~~i~iwd~~ 483 (1096)
+++.+ ..|++||+.+++. + .+..|...+ ..++|+|||+ ++++++.+ ..|++||..
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~-~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI-K---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE-E---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe-E---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88643 3799999988753 2 477888888 9999999998 78887754 357788844
Q ss_pred CceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC------------CCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCC
Q 001343 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI------------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1096)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 551 (1096)
+.....+..+. ...++|+| | ++++++. +...++|..........+..|...+.++.|+++ .
T Consensus 143 ~g~~~~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~ 215 (1045)
T 1k32_A 143 GINFVPLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-R 215 (1045)
T ss_dssp GTEEEECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-E
T ss_pred CCCeEEecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-E
Confidence 44444554433 34566765 5 7877753 345677765444555566788889999999988 4
Q ss_pred EEEEEeeccCCCCeEEEEeCCC-CeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCC---
Q 001343 552 RLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG--- 627 (1096)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 627 (1096)
.++++.. ++.+.+|.+.. +...+.+..+.. +...+|+|+|+.++++ .++.|++|++...... .+..+.
T Consensus 216 l~~~~~~----dg~~~l~~~~~~g~~~~~l~~~~~--~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~ 287 (1045)
T 1k32_A 216 IYFITDI----DGFGQIYSTDLDGKDLRKHTSFTD--YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLES 287 (1045)
T ss_dssp EEEEECT----TSSCEEEEEETTSCSCEECCCCCS--SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCB
T ss_pred EEEEEec----cCceEEEEEeCCCCcceEecCCCC--cceeeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccc
Confidence 4444433 56667776542 334455555543 4557999999988887 4899999999554433 443321
Q ss_pred ------CCCCccEEEEe-CCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCc
Q 001343 628 ------GLPNLPRLRFS-KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1096)
Q Consensus 628 ------~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~ 700 (1096)
+...+..++|+ |+|+.|++++ ++.|.+|++..+. ..
T Consensus 288 ~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-~~----------------------------------- 330 (1045)
T 1k32_A 288 PEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-VL----------------------------------- 330 (1045)
T ss_dssp CCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-EE-----------------------------------
T ss_pred cccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-eE-----------------------------------
Confidence 11257889999 9998888877 6778888765431 00
Q ss_pred eeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcc-cEEEEEEecCCceE
Q 001343 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSS-KVVRLLYTNSAVGL 779 (1096)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~~~~l 779 (1096)
.+.+ +.. .+..++|+ ||+.+
T Consensus 331 -------------------------------------------------------~~~~---~~~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 331 -------------------------------------------------------KVPE---PLRIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp -------------------------------------------------------ECSC---CSCEEEEEECSS-SEEEE
T ss_pred -------------------------------------------------------EccC---CCcceEEeeeEc-CCCeE
Confidence 0111 444 67788899 88888
Q ss_pred EEeecCCeEE-EeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEE
Q 001343 780 LALGSNGVQK-LWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLF 857 (1096)
Q Consensus 780 ~~~~~dg~v~-vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iw 857 (1096)
+.++.++.+. +|++. ++.... +.+ |...+..++|||||++||+++ ++.|++|
T Consensus 352 ~~~s~~~~l~~~~d~~----------------------~~~~~~--l~~--~~~~~~~~~~SpDG~~la~~~~~~~v~~~ 405 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYR----------------------TGKAEK--FEE--NLGNVFAMGVDRNGKFAVVANDRFEIMTV 405 (1045)
T ss_dssp EEEETTEEEEEEEETT----------------------TCCEEE--CCC--CCCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEECCCceEEEEECC----------------------CCCceE--ecC--CccceeeeEECCCCCEEEEECCCCeEEEE
Confidence 8877766666 66653 222222 223 678899999999999999988 6899999
Q ss_pred EcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCC----------eEEEEeeccceeeeeeccccccccceeeecCC
Q 001343 858 NMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS----------TIHIYNVRVDELCVWSIDTWEKRKSVTIHIPA 927 (1096)
Q Consensus 858 d~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg----------~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~ 927 (1096)
|+.+++....+.+|.+.+.+++||| |+++|++++.++ .|++||+.+++ +..+.
T Consensus 406 d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~----------------~~~l~ 468 (1045)
T 1k32_A 406 DLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----------------IFAAT 468 (1045)
T ss_dssp ETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE----------------EEECS
T ss_pred ECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc----------------EEEee
Confidence 9999998888878999999999999 899998887654 89999998775 23344
Q ss_pred CCCCCCCceEEEecCCcEEEE-EecceEEEEEccccee------------------------------------------
Q 001343 928 GKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMER------------------------------------------ 964 (1096)
Q Consensus 928 ~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~------------------------------------------ 964 (1096)
.+.. .+..++|+|||++|++ +.++...+|+......
T Consensus 469 ~~~~-~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~ 547 (1045)
T 1k32_A 469 TENS-HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYK 547 (1045)
T ss_dssp CSSS-BEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGG
T ss_pred CCCc-ccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhH
Confidence 4444 6788999999999998 6656555565422111
Q ss_pred -ccccccCCCCCCCceEEEEeeCCcEEEE-------------EecCCcEEEEecCCCceeEEEccccccCCCccCCCccc
Q 001343 965 -IRQWTPQDALSAPISCAVYSCNSQLVFA-------------TFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTV 1030 (1096)
Q Consensus 965 -~~~~~~~~~~~~~i~~l~~s~dg~~la~-------------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v 1030 (1096)
+..+.. +.+.+..++++|||+++++ ......|.+||+.+++...... .+
T Consensus 548 ~~~~l~~---~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~--------------~v 610 (1045)
T 1k32_A 548 RSSPINV---DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN--------------NL 610 (1045)
T ss_dssp GCEECSC---CCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEE--------------EE
T ss_pred ceEEcCC---CCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEeec--------------Cc
Confidence 011111 1567889999999998875 1234578889999887543321 35
Q ss_pred cceEEEecCCCCceEEEEeeCCcEEEEccCCCC
Q 001343 1031 YPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1063 (1096)
Q Consensus 1031 ~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~ 1063 (1096)
. .++||| ||++|++++.| .|++||+.+++
T Consensus 611 ~--~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 611 T--DLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp E--EEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred c--eEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 5 489999 99999998766 89999998876
No 44
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.4e-35 Score=341.60 Aligned_cols=283 Identities=15% Similarity=0.145 Sum_probs=239.0
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 424 (1096)
..+++++|+|+|++ |++|+.||.|++||+.+++.... +..| ..+....|+|++++|++|
T Consensus 57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCCe-EEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEE
Confidence 34568999999995 99999999999999987765421 3444 455566889999999999
Q ss_pred ECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEee
Q 001343 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPH 503 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~ 503 (1096)
+.||.|++||+.+++... .+.+|.+.|++++|+|+++ +|++|+.|++|++|| .+++.+..+.+|...|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999876654 4678999999999999999 899999999999999 8899999999999999999998
Q ss_pred ecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC---CCcEEE---------------------EEEcCCCCEEEEEeec
Q 001343 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP---GHWCTT---------------------MLYSADGSRLFSCGTS 559 (1096)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~i~~---------------------l~~s~~~~~l~~~~~~ 559 (1096)
| ++.+|++++.||+|++||+++++....+..+ ...+.+ ++|+|+++++++++.
T Consensus 191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 267 (420)
T 3vl1_A 191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV- 267 (420)
T ss_dssp T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET-
T ss_pred C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC-
Confidence 7 6689999999999999999998888777643 334444 455789999999987
Q ss_pred cCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCC-EEEEEEcCCeEEEEeCCCCeE-EEEeecCCCCCCccEEEE
Q 001343 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNI-LTSTDAEGGLPNLPRLRF 637 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~ 637 (1096)
++.|++||+++++....+.......+.+++|+|++. +|++++.||.|++||+.+++. +..+..+. ...|.++.+
T Consensus 268 ---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~ 343 (420)
T 3vl1_A 268 ---SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE-GTPINNVYF 343 (420)
T ss_dssp ---TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST-TSCEEEEEE
T ss_pred ---CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC-CCCceEEEe
Confidence 999999999999988888765445899999999998 999999999999999998753 66666532 236777755
Q ss_pred eCCCCEEEEEECCCcEEEEEcCCC
Q 001343 638 SKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 638 s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+++.+|++++.|+.|++|++...
T Consensus 344 -~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 344 -AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp -ETTEEEEEETTTEEEEEEEECCT
T ss_pred -CCCCEEEEecCCccEEEEeccCC
Confidence 57889999999999999998764
No 45
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.1e-34 Score=329.27 Aligned_cols=295 Identities=13% Similarity=0.182 Sum_probs=246.2
Q ss_pred ceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE
Q 001343 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1096)
Q Consensus 336 ~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1096)
.+...+. |...|++++|+|+|..+||+|+.||.|+|||+.+++..... .+.+|...|.+++|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~~~ 126 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGMKF 126 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEEEE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEEEe
Confidence 3455554 99999999999999338999999999999999988765420 13479999999999
Q ss_pred cC-CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCC
Q 001343 415 SP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH 493 (1096)
Q Consensus 415 sp-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 493 (1096)
+| ++++|++++.|+.|++||+.+ ..+..+....+|...|.+++|+|+++ +|++|+.|+.|++||.+++.+..+.+|
T Consensus 127 ~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~h 203 (383)
T 3ei3_B 127 NQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGLDGHEIFKEKLH 203 (383)
T ss_dssp ETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEETTSCEEEEEECS
T ss_pred CCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEECCCCEEEEeccC
Confidence 99 789999999999999999986 44443333345668999999999999 899999999999999888999999999
Q ss_pred CCCeEEEEeeecCCCc-EEEEEECCCeEEEEEcCC----CCeeeEEeCCCCcEEEEEEcC-CCCEEEEEeeccCCCCeEE
Q 001343 494 EAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDT----MGSRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLV 567 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~~~~~~~~i~ 567 (1096)
...|.+++|+| ++. ++++++.||.|++||+++ ......+ .+...|.+++|+| ++++|++++. ++.|+
T Consensus 204 ~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~~i~ 276 (383)
T 3ei3_B 204 KAKVTHAEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RNEIR 276 (383)
T ss_dssp SSCEEEEEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SSEEE
T ss_pred CCcEEEEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CCcEE
Confidence 99999999987 446 899999999999999997 4444444 6888999999999 9999999987 99999
Q ss_pred EEeCCCCeeeEEEcCcCc----------------cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCC
Q 001343 568 EWNESEGTIKRTYAGFRK----------------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1096)
Q Consensus 568 iwd~~~~~~~~~~~~~~~----------------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1096)
+||+.+++....+.+|.. ..+..++++|++.+ +++.||.|++||+.+++.+..+..+.+...
T Consensus 277 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~ 354 (383)
T 3ei3_B 277 VYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGI 354 (383)
T ss_dssp EEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSC
T ss_pred EEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCce
Confidence 999999888777765431 12333555666655 667899999999999999999987665557
Q ss_pred ccEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 632 LPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
+..++|+|++++|++++ |+.|++||+.+
T Consensus 355 ~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 355 ISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 88889999999999997 89999999864
No 46
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.1e-34 Score=356.06 Aligned_cols=295 Identities=20% Similarity=0.301 Sum_probs=251.6
Q ss_pred Eee-cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 339 VSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 339 ~~l-~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
..+ .|.+.|+|++|+|++..+|+||+.|++|+|||+.++..... .....+.+|...|.+++|+|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s~~ 441 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLSSD 441 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEECTT
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEECCC
Confidence 344 49999999999998766899999999999999986543210 011237889999999999999
Q ss_pred CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEe----eCC
Q 001343 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF----EGH 493 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~----~~~ 493 (1096)
+++|++|+.||+|+|||+.+++..+ .+.+|.+.|.+++|+|+++ .|++|+.|++|++||..+.+...+ .+|
T Consensus 442 g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h 516 (694)
T 3dm0_A 442 GQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGH 516 (694)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSC
T ss_pred CCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCC
Confidence 9999999999999999999987665 5789999999999999999 899999999999999555544443 478
Q ss_pred CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC
Q 001343 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
...|.+++|+|......+++++.||+|++||+++......+..|...|.+++|+|++++|++++. ++.|++||+.+
T Consensus 517 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~~ 592 (694)
T 3dm0_A 517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDLAE 592 (694)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEETTT
T ss_pred CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCC
Confidence 89999999988655578999999999999999999988899999999999999999999999997 99999999999
Q ss_pred CeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCC-----------------CCCccEEE
Q 001343 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-----------------LPNLPRLR 636 (1096)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~~~ 636 (1096)
++.+..+..+. .+.+++|+|++.++++++ ++.|++||+.++..+..+..+.. ...+.+++
T Consensus 593 ~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 669 (694)
T 3dm0_A 593 GKKLYSLEANS--VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLN 669 (694)
T ss_dssp TEEEECCBCSS--CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEE
T ss_pred CceEEEecCCC--cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEE
Confidence 99888776543 689999999988777665 56799999999988877653311 11367899
Q ss_pred EeCCCCEEEEEECCCcEEEEEcC
Q 001343 637 FSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
|+|+|++|++|+.||.|++|++.
T Consensus 670 ~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 670 WSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ECTTSSEEEEEETTSEEEEEEC-
T ss_pred EcCCCCEEEEEcCCCeEEEEecc
Confidence 99999999999999999999974
No 47
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=6.7e-34 Score=316.63 Aligned_cols=246 Identities=20% Similarity=0.314 Sum_probs=209.2
Q ss_pred ccccCCCCEEEEEE-----cC-CCCEEEEEECCCeEEEEEccCCCcc----ccceeecccccCEEEEEEecCCCcEEEEE
Q 001343 401 IFKDVPISVSRVAW-----SP-DGNYVGVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVT 470 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~-----sp-d~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~l~~h~~~v~~l~~s~d~~~~~l~s 470 (1096)
.+.+|.+.|++++| ++ |+++|++|+.|++|++||+.+++.. .....+.+|...|++++|+|++. ++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s 93 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS 93 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence 48899999999999 77 9999999999999999999765321 22336789999999999999999 8999
Q ss_pred EeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe---CCCCcEEEEEE
Q 001343 471 CGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLY 546 (1096)
Q Consensus 471 ~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~ 546 (1096)
|+.|++|++|| .+++.+..+.+|...|.+++|+| ++.+|++++.||+|++||+.. ....... .|...|.+++|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence 99999999999 88999999999999999999987 668999999999999999973 3333332 56678999999
Q ss_pred cCCC----------CEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCC-
Q 001343 547 SADG----------SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD- 615 (1096)
Q Consensus 547 s~~~----------~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~- 615 (1096)
+|++ .++++++. ++.|++|| .+++....+.+|.. .+.+++|+|++++|++|+.||.|++||+.
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHES-NVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred ccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCccc-cceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 9987 68899887 99999999 55677788888887 89999999999999999999999999994
Q ss_pred CCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.......+.. .+ .|.+++|+|++.+++++ .|+.|++|++.++
T Consensus 245 ~~~~~~~~~~-~~--~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 245 LTYPQREFDA-GS--TINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp CSSCSEEEEC-SS--CEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred CcccceeecC-CC--cEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 4444444432 22 69999999999888755 5778999998765
No 48
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-36 Score=345.94 Aligned_cols=359 Identities=10% Similarity=0.056 Sum_probs=255.2
Q ss_pred CcceEEeecCCCceEEEEEcCCC---------CcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCcccccccccc
Q 001343 334 PRTVAVSLHQGSTVISMDFHPSH---------QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 334 ~~~~~~~l~h~~~V~~v~fsp~g---------~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
..+...++.+.+.|++|+|+|++ + +||+|+.++.. .
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~------------~---------------------- 167 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMD------------E---------------------- 167 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC--------------------------------------
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEecccC------------C----------------------
Confidence 44556667788999999999997 5 79988755320 0
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcccc-ceeecccccCEEEEEEecC------CCcEEEEEEeCCCcE
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQ-HSQIDAHVGAVNDLAFAYP------NKLLCVVTCGDDKLI 477 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~l~~h~~~v~~l~~s~d------~~~~~l~s~s~d~~i 477 (1096)
..+|+++.|++++.|++|+|||+.+++.... ...+.+|.+.|++++|+|+ +. +|++++.||+|
T Consensus 168 --------~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtv 237 (524)
T 2j04_B 168 --------PLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTI 237 (524)
T ss_dssp ----------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCE
T ss_pred --------ccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeE
Confidence 1268999999999999999999988764321 1235678899999999997 45 89999999999
Q ss_pred EEEE-cCCce-----------EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe-eeEEeCCCCcEEEE
Q 001343 478 KVWE-LSGRK-----------LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTM 544 (1096)
Q Consensus 478 ~iwd-~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l 544 (1096)
++|| ..+.. ...+.+|...|++++|++ + ..|++|+.||+|++||++++.. ...+..|...|.++
T Consensus 238 rlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~--~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv 314 (524)
T 2j04_B 238 NFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS--P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSV 314 (524)
T ss_dssp EEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS--S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEE
T ss_pred EEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC--C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEE
Confidence 9999 54432 346789999999999975 3 4899999999999999987643 45678899999999
Q ss_pred --EEcCCC-CEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc-cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 001343 545 --LYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1096)
Q Consensus 545 --~~s~~~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1096)
+|++++ .+|++++. |+.|++||+++++....+.+|.. ..+.+++|+|++..+++++.|++|++||++++..+
T Consensus 315 ~~~~s~~g~~~laS~S~----D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~ 390 (524)
T 2j04_B 315 STAYSDFEDTVVSTVAV----DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV 390 (524)
T ss_dssp EEECCTTSCCEEEEEET----TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC
T ss_pred EEEcCCCCCeEEEEecc----CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc
Confidence 578888 88999987 99999999999888877777653 24678999999999999999999999999999887
Q ss_pred EEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCc
Q 001343 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1096)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~ 700 (1096)
..+..|.. .|++++|+|++++|++|+.||+|++||+... .+..............+..++|+|+|..+.
T Consensus 391 ~~l~gH~~--~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~------- 459 (524)
T 2j04_B 391 HPLVSRET--TITAIGVSRLHPMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYR------- 459 (524)
T ss_dssp EEEEECSS--CEEEEECCSSCCBCEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEE-------
T ss_pred eeeecCCC--ceEEEEeCCCCCeEEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEE-------
Confidence 77877655 8999999999999999999999999998543 222211110011112355677777776431
Q ss_pred eeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCc---
Q 001343 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV--- 777 (1096)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~--- 777 (1096)
.. +..++|.... .+. ....+.+ |...|.+++|+|++.
T Consensus 460 -------------------------------~~--~~~~~~~~~~---~g~-~~~~l~g---h~~~V~~Vafsp~~~~~~ 499 (524)
T 2j04_B 460 -------------------------------ID--SSYEVYPLTV---NDV-SKAKIDA---HGINITCTKWNETSAGGK 499 (524)
T ss_dssp -------------------------------EC--CCCCCCC--------------------CCCSCCCEEECCSTTTTT
T ss_pred -------------------------------cc--CCceeccccc---CCc-ceeeecC---CCceEEEEECCCCCCccH
Confidence 11 1223333210 122 2235566 999999999999964
Q ss_pred eEEEeecCCeEEEeeccC
Q 001343 778 GLLALGSNGVQKLWKWHR 795 (1096)
Q Consensus 778 ~l~~~~~dg~v~vw~~~~ 795 (1096)
.+++++.+|.|+||++..
T Consensus 500 ~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 500 CYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp EEEEECTTSEEEEEECSC
T ss_pred HHHhhccCceEEEEEccc
Confidence 778888889999999754
No 49
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.5e-34 Score=328.36 Aligned_cols=295 Identities=13% Similarity=0.170 Sum_probs=253.2
Q ss_pred EEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC
Q 001343 338 AVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1096)
Q Consensus 338 ~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1096)
...+. |.+.|++++|+| + +|++|+.||.|+|||+.+++...... ....+.+|...|.+++|+|
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~~~ 72 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKD-------------KSYSHFVHKSGLHHVDVLQ 72 (397)
T ss_dssp EEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGG-------------GEEEEECCTTCEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCC-------------cceEEecCCCcEEEEEEec
Confidence 44454 999999999999 4 79999999999999999887211100 0112678999999999999
Q ss_pred C----C---CEEEEEECCCeEEEEEccCCCc-----cccceeeccc-----ccCEEEEEEe----cCCCcEE-EEEEeCC
Q 001343 417 D----G---NYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAH-----VGAVNDLAFA----YPNKLLC-VVTCGDD 474 (1096)
Q Consensus 417 d----~---~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~l~~h-----~~~v~~l~~s----~d~~~~~-l~s~s~d 474 (1096)
+ + ++|++++.||.|++||+.+++. +. .+.+| ...|.+++|+ |+++ . |++++.|
T Consensus 73 ~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~d 147 (397)
T 1sq9_A 73 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVK 147 (397)
T ss_dssp EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETT
T ss_pred ccccCCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCC
Confidence 9 9 9999999999999999998875 44 56677 6999999999 9999 8 9999999
Q ss_pred CcEEEEE-cC------CceEE-----Ee-------eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe
Q 001343 475 KLIKVWE-LS------GRKLF-----NF-------EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535 (1096)
Q Consensus 475 ~~i~iwd-~~------~~~~~-----~~-------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 535 (1096)
+.|++|| .. ++.+. .+ ..|...|.+++|++ ++ ++++++.||.|++||+++.+....+.
T Consensus 148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~ 224 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFE 224 (397)
T ss_dssp SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEe
Confidence 9999999 66 66666 77 44899999999977 66 99999999999999999988888888
Q ss_pred C---C---CCcEEEEEEcCCCCEEEEEeeccCCC---CeEEEEeCCCCeeeEEEcC-------------cCccceEEEEE
Q 001343 536 A---P---GHWCTTMLYSADGSRLFSCGTSKDGD---SFLVEWNESEGTIKRTYAG-------------FRKKSNGVVQF 593 (1096)
Q Consensus 536 ~---~---~~~i~~l~~s~~~~~l~~~~~~~~~~---~~i~iwd~~~~~~~~~~~~-------------~~~~~i~~~~~ 593 (1096)
. | ...|.+++|+|++++|++++. + +.|++||+.+++.+..+.+ |.. .+.+++|
T Consensus 225 ~~~~h~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~ 299 (397)
T 1sq9_A 225 SQHSMINNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSF 299 (397)
T ss_dssp CCC---CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEEE
T ss_pred ccccccccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEEE
Confidence 8 8 889999999999999999987 7 8999999999999999988 766 8999999
Q ss_pred eCCCCEEEEEEcCCeEEEEeCCCCeEEEEee------cC-------------CCCCCccEEEEeCCC----------CEE
Q 001343 594 DTTQNHFLAVGEDSQIKFWDMDNVNILTSTD------AE-------------GGLPNLPRLRFSKEG----------NLL 644 (1096)
Q Consensus 594 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~~~~s~~~----------~~l 644 (1096)
+|++++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++|
T Consensus 300 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l 379 (397)
T 1sq9_A 300 NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESL 379 (397)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEE
T ss_pred CCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceE
Confidence 9999999999999999999999999999988 54 013489999999998 799
Q ss_pred EEEECCCcEEEEEcCCC
Q 001343 645 AVTTADNGFKILANAIG 661 (1096)
Q Consensus 645 ~~~~~dg~i~iwd~~~~ 661 (1096)
++++.||.|++|++.++
T Consensus 380 ~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 380 CCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEEETTTEEEEEEEEC-
T ss_pred EEecCCCcEEEEEcCCC
Confidence 99999999999999775
No 50
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.4e-33 Score=312.13 Aligned_cols=293 Identities=13% Similarity=0.186 Sum_probs=252.4
Q ss_pred cceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE
Q 001343 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1096)
Q Consensus 335 ~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1096)
......++|...|++++|+|+++ ++++|+ ||.|+|||+.+++.... + ......+|...|.+++|
T Consensus 42 ~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~~~~--~------------~~~~~~~~~~~v~~~~~ 105 (337)
T 1gxr_A 42 ARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP--V------------SQLDCLNRDNYIRSCKL 105 (337)
T ss_dssp EEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC--S------------EEEECSCTTSBEEEEEE
T ss_pred cccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCCceee--e------------ecccccCCCCcEEEEEE
Confidence 44556678999999999999999 688888 99999999988764421 0 10012368999999999
Q ss_pred cCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCC
Q 001343 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1096)
Q Consensus 415 spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~ 493 (1096)
+|++++|++++.||.|++||+.+++.. ....+.+|...|.+++|+|+++ +|++++.|+.|++|| .+++.+..+.+|
T Consensus 106 ~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~v~~~d~~~~~~~~~~~~~ 182 (337)
T 1gxr_A 106 LPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGH 182 (337)
T ss_dssp CTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred cCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccCCCceEEEEECCCCC--EEEEEeCCCcEEEEeCCCCceeeeeecc
Confidence 999999999999999999999987632 2225778999999999999999 899999999999999 888999999999
Q ss_pred CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC
Q 001343 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
...|.+++|+| ++.+|++++.||.|++||+++.+....+. +...+.+++|+|+++++++++. ++.|++||+.+
T Consensus 183 ~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~----~~~i~~~~~~~ 255 (337)
T 1gxr_A 183 TDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNK 255 (337)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET----TSCEEEEETTS
T ss_pred cCceEEEEECC--CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcC----CCcEEEEECCC
Confidence 99999999977 66899999999999999999887776654 5668999999999999999986 89999999998
Q ss_pred CeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcE
Q 001343 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1096)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 653 (1096)
++.. .+..|.. .+..++|+|+++++++++.||.|++|++.+++.+..... ...|.+++|+|++++|++++.||.|
T Consensus 256 ~~~~-~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i 330 (337)
T 1gxr_A 256 PDKY-QLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp SCEE-EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSCEEEEEECTTSCEEEEEETTSCE
T ss_pred CCeE-EEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecC---CCcEEEEEECCCCCEEEEecCCCeE
Confidence 8764 5666666 899999999999999999999999999999988865543 2379999999999999999999999
Q ss_pred EEEEc
Q 001343 654 KILAN 658 (1096)
Q Consensus 654 ~iwd~ 658 (1096)
++|++
T Consensus 331 ~iw~~ 335 (337)
T 1gxr_A 331 TVYEV 335 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 51
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-33 Score=317.14 Aligned_cols=286 Identities=13% Similarity=0.124 Sum_probs=256.0
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC
Q 001343 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1096)
Q Consensus 340 ~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~ 419 (1096)
..+|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++.+.. +.+|...|.+++|+|+++
T Consensus 28 l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~ 87 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVDCFTK 87 (369)
T ss_dssp EECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTSS
T ss_pred EEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEcCCCC
Confidence 345999999999999999 799999999999999999887653 778999999999999999
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC-----CcEEEEE-cCCc--------
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LSGR-------- 485 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d-----~~i~iwd-~~~~-------- 485 (1096)
+|++++.||.|++||+.+++.+.. +. |...|.+++|+|+++ ++++++.+ +.|++|| ..+.
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~---~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 161 (369)
T 3zwl_B 88 YCVTGSADYSIKLWDVSNGQCVAT---WK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELTKV 161 (369)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEE---EE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEE---ee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeeccc
Confidence 999999999999999999887663 43 889999999999999 89999998 9999999 4442
Q ss_pred ---eEEEeeCCCC--CeEEEEeeecCCCcEEEEEECCCeEEEEEcCC-CCeeeEEeCCCCcEEEEEEcCCCCEEEEEeec
Q 001343 486 ---KLFNFEGHEA--PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 486 ---~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
.+..+..|.. .+.+++|++ ++.+|++++.||.|++||+++ ......+..+...|.+++|+|++++|++++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 238 (369)
T 3zwl_B 162 SEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR- 238 (369)
T ss_dssp CSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred ccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC-
Confidence 4455666766 899999987 568999999999999999998 6667788889999999999999999999986
Q ss_pred cCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCC--------------eEEEEeCCCCeEEEEeec
Q 001343 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--------------QIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~ 625 (1096)
++.|++||+.+++.+..+.. .. .+..++|+|++.++++++.++ .+++||..+++.+..+..
T Consensus 239 ---d~~i~v~d~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 313 (369)
T 3zwl_B 239 ---DTNSFLVDVSTLQVLKKYET-DC-PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG 313 (369)
T ss_dssp ---TSEEEEEETTTCCEEEEEEC-SS-CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC
T ss_pred ---CceEEEEECCCCceeeeecC-CC-CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec
Confidence 99999999999999988883 33 788999999999999999888 899999999999999987
Q ss_pred CCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 626 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+.. .|.+++|+|++++|++++.||.|++|++.++
T Consensus 314 ~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 314 HFG--PLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp CSS--CEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred ccC--cEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 765 8999999999999999999999999999765
No 52
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=309.75 Aligned_cols=287 Identities=17% Similarity=0.261 Sum_probs=252.8
Q ss_pred ceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE
Q 001343 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1096)
Q Consensus 336 ~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1096)
++.+++. |.+.|++++| |+++ +|++|+.||.|+|||+.+++.... +..|...|.+++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~~ 67 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVCY 67 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEEE
Confidence 5566665 9999999999 9998 699999999999999988776542 6678999999999
Q ss_pred cCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCC
Q 001343 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE 494 (1096)
Q Consensus 415 spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 494 (1096)
+|++++|++|+.||.|++|++...........+.+|...|.+++| +++ .+++++.|+.|++|| .++.+..+..|.
T Consensus 68 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d-~~~~~~~~~~~~ 142 (313)
T 3odt_A 68 DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK-EGSLVYNLQAHN 142 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE-TTEEEEEEECCS
T ss_pred CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc-CCcEEEecccCC
Confidence 999999999999999999999876554545578899999999999 456 899999999999999 778888999999
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC-CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
.++.++++.+. ++.++++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||+++
T Consensus 143 ~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~~~ 214 (313)
T 3odt_A 143 ASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDMHT 214 (313)
T ss_dssp SCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEETTT
T ss_pred CceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEECCc
Confidence 99999999874 457999999999999999 4455556665 778999999999998 777776 99999999999
Q ss_pred CeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcE
Q 001343 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1096)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 653 (1096)
++.+..+.+|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .|.+++|+|+++ +++++.||.|
T Consensus 215 ~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~dg~i 289 (313)
T 3odt_A 215 GDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSSDNLV 289 (313)
T ss_dssp CCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEETTSCE
T ss_pred hhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeCCCcE
Confidence 999999999887 89999999998 689999999999999999999999987765 899999999998 6679999999
Q ss_pred EEEEcCCC
Q 001343 654 KILANAIG 661 (1096)
Q Consensus 654 ~iwd~~~~ 661 (1096)
++|++.++
T Consensus 290 ~iw~~~~~ 297 (313)
T 3odt_A 290 RIFSQEKS 297 (313)
T ss_dssp EEEESCGG
T ss_pred EEEeCCCC
Confidence 99999876
No 53
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.7e-34 Score=322.86 Aligned_cols=289 Identities=18% Similarity=0.282 Sum_probs=243.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccc------------------cCEEEEEEecCCCc
Q 001343 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHV------------------GAVNDLAFAYPNKL 465 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~------------------~~v~~l~~s~d~~~ 465 (1096)
+|.+.|.+++|||||++||+|+ ++.+++|++.+++.+.. +..|. ..|++++|+|+++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVAR---LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEE---ECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEE---ecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999986 68999999999876653 33332 3499999999999
Q ss_pred EEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEE
Q 001343 466 LCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTM 544 (1096)
Q Consensus 466 ~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l 544 (1096)
+|++|+.|++|++|| .+++.+..+.+|...|.+++|+| ++.+|++++.||+|++||+++++....+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 899999999999999 88889999999999999999977 66899999999999999999888776665 34579999
Q ss_pred EEcC-CCCEEEEEeeccCCCCeEEEEeCCCCeeeEEE-------cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 545 LYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY-------AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 545 ~~s~-~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
+|+| +++++++++. ++.|++||+.+++.+..+ .+|.. .+.+++|+|++.+|++++.|+.|++||+.+
T Consensus 213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9999 8999999987 999999999999888777 45655 899999999999999999999999999976
Q ss_pred Ce------------EEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEE
Q 001343 617 VN------------ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVA 684 (1096)
Q Consensus 617 ~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 684 (1096)
.. ....+..|.. .|.+++|+|++.+|++++.|+.|++||..++ ..+..+.+|. ..|.+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-~~~~~l~~h~-----~~v~~v~ 359 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGHKD--FVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQGHR-----NSVISVA 359 (393)
T ss_dssp -------------CEEEEEECCSS--CEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEECCS-----SCEEEEE
T ss_pred CCCcccccCCCCCcceEEEecccC--cEEEEEECCCCCEEEEEeCCCeEEEEECCCC-eEEEEECCCC-----CCEEEEE
Confidence 32 3444555544 8999999999999999999999999999888 5556666664 3477788
Q ss_pred eecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeee
Q 001343 685 LKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (1096)
Q Consensus 685 ~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~ 745 (1096)
|+++.. +.|++.++++++.|++|++|++..
T Consensus 360 ~~~~~~-------------------------------~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 360 VANGSS-------------------------------LGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ECSSCT-------------------------------TCTTCEEEEEEETTSEEEEEEEEE
T ss_pred ecCCcC-------------------------------cCCCCCEEEEECCCCcEEECcccc
Confidence 765432 357788899999999999999873
No 54
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.3e-34 Score=331.33 Aligned_cols=333 Identities=10% Similarity=0.020 Sum_probs=266.5
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCce
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~ 486 (1096)
.+++++|+|++++|++|+.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++|| .+++.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~ 131 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNLQ 131 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcce
Confidence 45579999999999999999999999999876655 34455 4455667899999 899999999999999 88888
Q ss_pred EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeE
Q 001343 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1096)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i 566 (1096)
...+.+|...|++++|+| ++.+|++++.||.|++||+++.+....+..|...|.+++|+|++++|++++. ++.|
T Consensus 132 ~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~v 205 (420)
T 3vl1_A 132 REIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGTI 205 (420)
T ss_dssp EEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSCE
T ss_pred eeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCcE
Confidence 888889999999999987 5689999999999999999999999999999999999999999999999987 9999
Q ss_pred EEEeCCCCeeeEEEcCcCc--cceEE---------------------EEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001343 567 VEWNESEGTIKRTYAGFRK--KSNGV---------------------VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (1096)
Q Consensus 567 ~iwd~~~~~~~~~~~~~~~--~~i~~---------------------~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1096)
++||+++++.+..+..+.. ..+.+ ++|+|+++++++++.||.|++||+.+++.+..+
T Consensus 206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 285 (420)
T 3vl1_A 206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL 285 (420)
T ss_dssp EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc
Confidence 9999999999999876421 13444 445788999999999999999999998887776
Q ss_pred ecCCCCCCccEEEEeCCCC-EEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCcee
Q 001343 624 DAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK 702 (1096)
Q Consensus 624 ~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~ 702 (1096)
... +...|.+++|+|++. +|++++.||.|++||+.++...+..+..
T Consensus 286 ~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-------------------------------- 332 (420)
T 3vl1_A 286 PSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI-------------------------------- 332 (420)
T ss_dssp CCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE--------------------------------
T ss_pred ccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc--------------------------------
Confidence 542 234899999999998 9999999999999999765211111100
Q ss_pred EeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEe
Q 001343 703 VERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL 782 (1096)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 782 (1096)
. |...|.++.+ +++..++++
T Consensus 333 --------------------------------------------------------~---~~~~v~~~~~-~~~~~l~s~ 352 (420)
T 3vl1_A 333 --------------------------------------------------------N---EGTPINNVYF-AAGALFVSS 352 (420)
T ss_dssp --------------------------------------------------------S---TTSCEEEEEE-ETTEEEEEE
T ss_pred --------------------------------------------------------c---CCCCceEEEe-CCCCEEEEe
Confidence 0 4556777754 567788888
Q ss_pred ecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCc----EEEEecCCeEEEEE
Q 001343 783 GSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS----YVMSATGGKISLFN 858 (1096)
Q Consensus 783 ~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~----~la~~~dg~v~iwd 858 (1096)
+.|+.+++|++....... . +....... .+.+ |...|.+++|+|+++ ++++|++|.+.+|+
T Consensus 353 ~~d~~v~iw~~~~~~~~~---~-------~~~~~~~~----~~~~--~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 353 GFDTSIKLDIISDPESER---P-------AIEFETPT----FLVS--NDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp TTTEEEEEEEECCTTCCS---C-------EECTTSCE----EECC--SSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred cCCccEEEEeccCCCCCc---c-------ceeccCcc----EEcc--CCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence 899999999986532100 0 00001111 1223 788999999999998 77777799999999
Q ss_pred ccc
Q 001343 859 MMT 861 (1096)
Q Consensus 859 ~~~ 861 (1096)
+.+
T Consensus 417 ~~~ 419 (420)
T 3vl1_A 417 LSN 419 (420)
T ss_dssp SCC
T ss_pred ccC
Confidence 854
No 55
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2e-33 Score=325.75 Aligned_cols=304 Identities=16% Similarity=0.250 Sum_probs=260.8
Q ss_pred cCCCce-EEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE
Q 001343 342 HQGSTV-ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1096)
Q Consensus 342 ~h~~~V-~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 420 (1096)
+|.+.| +|+. ++|+ ++++|+.||+|+|||+.+++.+.. +.+|...|.+++|+ +++
T Consensus 116 ~h~~~v~~~~~--~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~--~~~ 171 (445)
T 2ovr_B 116 GHDDHVITCLQ--FCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR--DNI 171 (445)
T ss_dssp CSTTSCEEEEE--EETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE--TTE
T ss_pred ccCCCcEEEEE--EcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec--CCE
Confidence 487765 5554 4677 799999999999999999987754 77899999999998 679
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEE
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~ 499 (1096)
|++|+.||+|++||+.+++.+. .+.+|...|.++.|+ ++ .+++|+.||+|++|| .+++.+..+.+|...|.+
T Consensus 172 l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 244 (445)
T 2ovr_B 172 IISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 244 (445)
T ss_dssp EEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEE
T ss_pred EEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEE
Confidence 9999999999999999987665 578999999999996 44 799999999999999 889999999999999999
Q ss_pred EEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEE
Q 001343 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1096)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 579 (1096)
+++ ++.++++|+.||.|++||+++.+....+..|...|.++.| ++.++++++. ++.|++||+.+++.+..
T Consensus 245 ~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~~~~~~ 314 (445)
T 2ovr_B 245 VQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETGNCIHT 314 (445)
T ss_dssp EEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTCCEEEE
T ss_pred EEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCCCEEEE
Confidence 998 4578999999999999999999988899999999999999 7889999987 99999999999999999
Q ss_pred EcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCC-CCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-GLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 580 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
+.+|.. .+.++.+ +++++++++.||.|++||+.+++.+..+..+. +...|.+++|+ ++++++++.||.|++||+
T Consensus 315 ~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 315 LTGHQS-LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp ECCCCS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred EcCCcc-cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 998877 6766666 46799999999999999999999998887632 44589999995 579999999999999999
Q ss_pred CCCccccccccCCCcccccCcceeEEeecCCCeE
Q 001343 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
.++ +.+..+...........+.+++|+|++..+
T Consensus 390 ~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 422 (445)
T 2ovr_B 390 KTG-EFIRNLVTLESGGSGGVVWRIRASNTKLVC 422 (445)
T ss_dssp TTC-CEEEEEEECTTGGGTCEEEEEEECSSEEEE
T ss_pred CCC-ceeeeeeccccCCCCceEEEEEecCCEEEE
Confidence 988 445444322223345678888988877665
No 56
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=312.45 Aligned_cols=247 Identities=15% Similarity=0.169 Sum_probs=202.6
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceee-cc-cccCEEEEEEecCCCcEEEEEEeCCCcEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI-DA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l-~~-h~~~v~~l~~s~d~~~~~l~s~s~d~~i~ 478 (1096)
.+.+|.+.|.+++|+|+ +||+|+.|++|++||+.++... ....+ .+ |.+.|++++|+|+++ +|++|+.|++|+
T Consensus 9 ~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~-~~~~~~~~~h~~~v~~v~~sp~~~--~las~s~D~~v~ 83 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT-LIDVLDETAHKKAIRSVAWRPHTS--LLAAGSFDSTVS 83 (330)
T ss_dssp EEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCE-EEEEECTTCCCSCEEEEEECTTSS--EEEEEETTSCEE
T ss_pred eeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE-EEEEEecCCccCCEEEEEECCCCC--EEEEEeCCCcEE
Confidence 37889999999999998 9999999999999999875321 11134 34 999999999999999 899999999999
Q ss_pred EEEc-C-------CceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC----CeeeEEeCCCCcEEEEEE
Q 001343 479 VWEL-S-------GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM----GSRVDYDAPGHWCTTMLY 546 (1096)
Q Consensus 479 iwd~-~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~l~~ 546 (1096)
+||. . .+++..+.+|...|.+++|+| ++.+|++|+.|++|++||++.. +....+..|...|.+++|
T Consensus 84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~ 161 (330)
T 2hes_X 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN--DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW 161 (330)
T ss_dssp EEEC-------CCCEEEEEEC----CEEEEEECT--TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE
T ss_pred EEEcccCcCccccceeEEEEcCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE
Confidence 9993 2 346778899999999999977 6789999999999999999533 334567788899999999
Q ss_pred cCCCCEEEEEeeccCCCCeEEEEeCCCC--eeeEEEcCcCccceEEEEEeCC--CCEEEEEEcCCeEEEEeCCCC-----
Q 001343 547 SADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTT--QNHFLAVGEDSQIKFWDMDNV----- 617 (1096)
Q Consensus 547 s~~~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~----- 617 (1096)
+|++.+|++++. |+.|++||..++ +++..+.+|.. .|.+++|+|+ +..+++++.|++|++||+..+
T Consensus 162 ~p~~~~l~s~s~----D~~i~iW~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 162 HPSEALLASSSY----DDTVRIWKDYDDDWECVAVLNGHEG-TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp CSSSSEEEEEET----TSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred CCCCCEEEEEcC----CCeEEEEECCCCCeeEEEEccCCCC-cEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence 999999999997 999999998776 67888999987 8999999998 678999999999999998654
Q ss_pred ---eEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 618 ---NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 618 ---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.....+.. .+...|.+++|++++ +|++++.||.|++|+..++
T Consensus 237 ~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 237 QEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred ceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 23333332 134489999999665 7899999999999997543
No 57
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-35 Score=336.48 Aligned_cols=385 Identities=9% Similarity=0.065 Sum_probs=277.1
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCEEEEEECCCe
Q 001343 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVAFTKHL 429 (1096)
Q Consensus 351 ~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~~~dg~ 429 (1096)
.|+|+++ .+++++ .|+. +++.+.. +..+|.+.|++++|+| ++++||+|+.||+
T Consensus 34 ~f~~~~~-~~~~~~------~w~~-~g~~~~~------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~ 87 (437)
T 3gre_A 34 EFGPIQE-IVRSPN------MGNL-RGKLIAT------------------LMENEPNSITSSAVSPGETPYLITGSDQGV 87 (437)
T ss_dssp GGCCCCC-CCCCCC------GGGC-CCCEEEE------------------ECTTTTSCEEEEEEECSSSCEEEEEETTSE
T ss_pred hcCCccc-cccccc------cccc-cceEEee------------------eccCCCCceEEEEECCCCCCEEEEecCCce
Confidence 4788888 466543 4873 4555432 1378999999999999 9999999999999
Q ss_pred EEEEEccC---CCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c---CCceEEEeeCCCCCeEEEEe
Q 001343 430 IQLYSYAG---SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L---SGRKLFNFEGHEAPVYSICP 502 (1096)
Q Consensus 430 i~vwd~~~---~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~---~~~~~~~~~~~~~~v~~~~~ 502 (1096)
|+|||+.+ +...+....+ +|.+.|++++|+|+++ +|++|+.||+|++|| . .++.+..+.+| .+..+.+
T Consensus 88 v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~ 162 (437)
T 3gre_A 88 IKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINL 162 (437)
T ss_dssp EEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEG
T ss_pred EEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEc
Confidence 99999987 5433322223 5999999999999999 899999999999999 3 67777777666 5677776
Q ss_pred eecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEE--EcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEE
Q 001343 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML--YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1096)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~--~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1096)
++.+ +...+.++. +++++.++++++. ++.|++||+++++.+..+
T Consensus 163 ~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~ 208 (437)
T 3gre_A 163 KNFG------------------------------KNEYAVRMRAFVNEEKSLLVALTN----LSRVIIFDIRTLERLQII 208 (437)
T ss_dssp GGGS------------------------------SCCCEEEEEEEECSSCEEEEEEET----TSEEEEEETTTCCEEEEE
T ss_pred cCcc------------------------------cccCceEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeeeEEE
Confidence 5521 122344444 6789999999987 999999999999999999
Q ss_pred cC--cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC----CCCEEEEEECCCcEE
Q 001343 581 AG--FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK----EGNLLAVTTADNGFK 654 (1096)
Q Consensus 581 ~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~dg~i~ 654 (1096)
.+ |.. .+.+++|+|++.+|++|+.||.|++||+++++.+..+.... ...|.+++|+| ++.+|++++.||.|+
T Consensus 209 ~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~ 286 (437)
T 3gre_A 209 ENSPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HAPITHVEVCQFYGKNSVIVVGGSSKTFLT 286 (437)
T ss_dssp ECCGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CEEEEEEEECTTTCTTEEEEEEESTTEEEE
T ss_pred ccCCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CCceEEEEeccccCCCccEEEEEcCCCcEE
Confidence 88 555 89999999999999999999999999999999998876322 23799996664 678999999999999
Q ss_pred EEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCC
Q 001343 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDV 734 (1096)
Q Consensus 655 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 734 (1096)
+||+.++ +....+.++... +..+.|+|+++.+ ....
T Consensus 287 iwd~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~l-------------------------------------~~~~- 322 (437)
T 3gre_A 287 IWNFVKG-HCQYAFINSDEQ-----PSMEHFLPIEKGL-------------------------------------EELN- 322 (437)
T ss_dssp EEETTTT-EEEEEEESSSSC-----CCGGGGSCBCSSG-------------------------------------GGCC-
T ss_pred EEEcCCC-cEEEEEEcCCCC-----Cccceeccccccc-------------------------------------ccce-
Confidence 9999887 555555554322 3334444443322 1000
Q ss_pred CCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccc
Q 001343 735 TDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWL 814 (1096)
Q Consensus 735 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~ 814 (1096)
+.+ ..|...|.+++|+ ++..|++++.|+.|++|++..
T Consensus 323 ----------------------~~~-~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~------------------- 359 (437)
T 3gre_A 323 ----------------------FCG-IRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE------------------- 359 (437)
T ss_dssp ----------------------CCC-CCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC-------------------
T ss_pred ----------------------ecc-cccCCceEEEEEC-CceEEEecCCCCeEEEEECCC-------------------
Confidence 000 1178899999999 778899999999999999743
Q ss_pred cCccccccccccC-CCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeecCCCCCeeEEEEecCC--CcEEEEe
Q 001343 815 PSSGLLMANDVAG-VNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQD--NNIIAIG 891 (1096)
Q Consensus 815 ~~~~~~~~~~~~g-~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d--~~~l~s~ 891 (1096)
+++.. .+.+ ......+....++++..+++.. |+...+.....+..|...|++++|++ + +.+|++|
T Consensus 360 ---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~h~~~I~~i~~~~-~~~~~~l~s~ 427 (437)
T 3gre_A 360 ---LSSSK-AVISPSRFSDVFIPTQVTANLTMLLRK-------MKRTSTHSVDDSLYHHDIINSISTCE-VDETPLLVAC 427 (437)
T ss_dssp ---GGGCE-EEECC--CCCEEEEEEEETTEEEEEEE-------CC-------------CCCEEEEEEEE-SSSSEEEEEE
T ss_pred ---cccce-EEecccccCceEEEEEeecceEEEEEe-------cccccccccCcccccccceeeEeeec-cCCceEEEEE
Confidence 22222 1222 0023344555666666555544 33334445556677999999999999 6 7899999
Q ss_pred eCCCeEEEEe
Q 001343 892 TEDSTIHIYN 901 (1096)
Q Consensus 892 ~~dg~i~iw~ 901 (1096)
+.||.|+||+
T Consensus 428 ~~dG~I~iw~ 437 (437)
T 3gre_A 428 DNSGLIGIFQ 437 (437)
T ss_dssp ETTSCEEEEC
T ss_pred cCCceEEEeC
Confidence 9999999995
No 58
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-35 Score=339.73 Aligned_cols=349 Identities=9% Similarity=0.033 Sum_probs=246.5
Q ss_pred CCCCEEEEEEcCCC---------CEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC
Q 001343 405 VPISVSRVAWSPDG---------NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1096)
Q Consensus 405 h~~~V~~l~~spd~---------~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~ 475 (1096)
+.+.|.+|+|+|++ ++||+|+.++.. -..+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 57789999999987 799999876420 01268888 899999999
Q ss_pred cEEEEE-cCCceE----EEeeCCCCCeEEEEeeec----CCCcEEEEEECCCeEEEEEcCCCCe-----------eeEEe
Q 001343 476 LIKVWE-LSGRKL----FNFEGHEAPVYSICPHHK----ENIQFIFSTAIDGKIKAWLYDTMGS-----------RVDYD 535 (1096)
Q Consensus 476 ~i~iwd-~~~~~~----~~~~~~~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~ 535 (1096)
+|+||| ..++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 999999 655542 446778899999999986 3467999999999999999976542 23567
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC-eeeEEEcCcCccceEEE--EEeCCC-CEEEEEEcCCeEEE
Q 001343 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVV--QFDTTQ-NHFLAVGEDSQIKF 611 (1096)
Q Consensus 536 ~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~dg~i~i 611 (1096)
.|...|.+++|++++ .|++++. |+.|++||++++ .+...+.+|.. .|.++ .|++++ .+|++++.|++|++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 788899999999864 7888886 999999999976 44566888887 78888 578887 89999999999999
Q ss_pred EeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCe
Q 001343 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (1096)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 691 (1096)
||+++++....+..+.....|.+++|+|++..+++++.|++|++||+.++. +..
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~-~~~------------------------- 391 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF-AVH------------------------- 391 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT-CCE-------------------------
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc-cce-------------------------
Confidence 999988776666554332358899999999999999999999999986541 100
Q ss_pred EEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEE
Q 001343 692 AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLL 771 (1096)
Q Consensus 692 lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 771 (1096)
.+.+ |...|.+++
T Consensus 392 ----------------------------------------------------------------~l~g---H~~~V~sva 404 (524)
T 2j04_B 392 ----------------------------------------------------------------PLVS---RETTITAIG 404 (524)
T ss_dssp ----------------------------------------------------------------EEEE---CSSCEEEEE
T ss_pred ----------------------------------------------------------------eeec---CCCceEEEE
Confidence 1112 888999999
Q ss_pred EecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecC
Q 001343 772 YTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG 851 (1096)
Q Consensus 772 ~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~d 851 (1096)
|+|+++.|++++.||+|++|++.... +....+ .....+...+.+++|+|+|+.+.. .
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~~---------------~~~~~~------~~~~~~~~~v~~v~~sp~g~~~~~-~- 461 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARRL---------------LHGIKN------SSATQKSLRLWKWDYSIKDDKYRI-D- 461 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSST---------------TTCC------------CCCCEEEECBCCSSSCEEEE-C-
T ss_pred eCCCCCeEEEEECCCEEEEEechHhh---------------cccccc------CccceeeeEEEEeccCCCCCeEEc-c-
Confidence 99999999999999999999963311 000000 000001235778999999986533 2
Q ss_pred CeEEEEEcc-cceEEEeecCCCCCeeEEEEecCCC---cEEEEeeCCCeEEEEeecc
Q 001343 852 GKISLFNMM-TFKVMTTFMSPPPASTFLAFHPQDN---NIIAIGTEDSTIHIYNVRV 904 (1096)
Q Consensus 852 g~v~iwd~~-~~~~~~~~~~h~~~i~~l~~s~~d~---~~l~s~~~dg~i~iw~~~~ 904 (1096)
+.+++|+.. ++.++.++.+|...|.+|+|+| ++ ..+++|+.||.|+||++..
T Consensus 462 ~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 462 SSYEVYPLTVNDVSKAKIDAHGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCCCCC-------------CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred CCceecccccCCcceeeecCCCceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 233344432 5778889999999999999999 64 5999999999999999864
No 59
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8.6e-33 Score=322.64 Aligned_cols=278 Identities=16% Similarity=0.261 Sum_probs=244.0
Q ss_pred ecCCCc-eEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC
Q 001343 341 LHQGST-VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1096)
Q Consensus 341 l~h~~~-V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~ 419 (1096)
.+|... +.|+.|+ ++ ++++|+.||+|++||+.+++.+.. +.+|.+.|.+++|+|++
T Consensus 118 ~~h~~~v~~~~~~~--~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l~~~~~~- 174 (464)
T 3v7d_B 118 RGHMTSVITCLQFE--DN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKYAHGG- 174 (464)
T ss_dssp ECCSSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEEEECSTT-
T ss_pred cCCCCCcEEEEEEC--CC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEEEEcCCC-
Confidence 348777 4777774 55 799999999999999999887753 77899999999999988
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEec--CCCcEEEEEEeCCCcEEEEE-cCCc-----------
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWE-LSGR----------- 485 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~--d~~~~~l~s~s~d~~i~iwd-~~~~----------- 485 (1096)
+|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|++ ++. ++++|+.|++|++|| .++.
T Consensus 175 ~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 249 (464)
T 3v7d_B 175 ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC------CCS
T ss_pred EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCcccccccccCCc
Confidence 99999999999999999987665 5789999999999995 556 899999999999999 5544
Q ss_pred ------------eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEE
Q 001343 486 ------------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1096)
Q Consensus 486 ------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 553 (1096)
.+..+.+|...|.++.. ++.++++++.||.|++||+++.+....+..|...|.+++|+|+++++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 325 (464)
T 3v7d_B 250 PLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 325 (464)
T ss_dssp SEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEE
T ss_pred ceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEE
Confidence 25567889999998853 45799999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCcc
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1096)
++++. ++.|++||+.+++.+..+.+|.. .+.++.++ +.++++++.||.|++||+.++......... ..+.
T Consensus 326 ~sg~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~---~~~~ 395 (464)
T 3v7d_B 326 ISASM----DTTIRIWDLENGELMYTLQGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT---NLSA 395 (464)
T ss_dssp EEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT---TCCC
T ss_pred EEEeC----CCcEEEEECCCCcEEEEEeCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC---CCcc
Confidence 99987 99999999999999999999987 88889887 589999999999999999998776666432 2678
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 634 RLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.++|++++.++++++ ||.|++||+.++
T Consensus 396 ~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 396 ITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp EEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred EEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 899999999999998 899999999877
No 60
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-35 Score=335.02 Aligned_cols=307 Identities=15% Similarity=0.213 Sum_probs=259.6
Q ss_pred eeecCCCCc-ceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCC----CeeecccceeecccccCccccccc
Q 001343 327 TWSLDDLPR-TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR----DRLVSKPFKIWDMAACSLPFQASI 401 (1096)
Q Consensus 327 ~~~~~~~~~-~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1096)
+|++..... ..+..+.|...|++++|+|+++ +||+|+.||.|+|||+.+. +.+. .
T Consensus 49 iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~-------------------~ 108 (416)
T 2pm9_A 49 LWSLLAADSEKPIASLQVDSKFNDLDWSHNNK-IIAGALDNGSLELYSTNEANNAINSMA-------------------R 108 (416)
T ss_dssp EEESSSGGGCSCSCCCCCSSCEEEEEECSSSS-CEEEEESSSCEEEECCSSTTSCCCEEE-------------------E
T ss_pred EEEccCCCCCcEEEEEecCCceEEEEECCCCC-eEEEEccCCeEEEeecccccccccchh-------------------h
Confidence 898876443 3556677999999999999999 6999999999999999872 2322 2
Q ss_pred cccCCCCEEEEEEcCC-CCEEEEEECCCeEEEEEccCCC------ccccceeecccccCEEEEEEecC-CCcEEEEEEeC
Q 001343 402 FKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSN------DLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGD 473 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd-~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~l~~h~~~v~~l~~s~d-~~~~~l~s~s~ 473 (1096)
+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++ .......+.+|...|.+++|+|+ +. +|++++.
T Consensus 109 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~ 186 (416)
T 2pm9_A 109 FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAH--VFASAGS 186 (416)
T ss_dssp CCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTT--EEEEESS
T ss_pred ccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCc--EEEEEcC
Confidence 7789999999999998 8999999999999999999876 33333345689999999999999 55 8999999
Q ss_pred CCcEEEEE-cCCceEEEeeCC------CCCeEEEEeeecCCCcEEEEEECCC---eEEEEEcCCC-CeeeEEe-CCCCcE
Q 001343 474 DKLIKVWE-LSGRKLFNFEGH------EAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTM-GSRVDYD-APGHWC 541 (1096)
Q Consensus 474 d~~i~iwd-~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~-~~~~~~~-~~~~~i 541 (1096)
|+.|++|| .+++.+..+..| ...|.+++|+|.+ ..++++++.|+ .|++||+++. .....+. .|...|
T Consensus 187 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v 265 (416)
T 2pm9_A 187 SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN-STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGI 265 (416)
T ss_dssp SSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC-TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCE
T ss_pred CCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC-CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCce
Confidence 99999999 888888888876 7899999998752 36899999999 9999999986 4555666 788899
Q ss_pred EEEEEcC-CCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCCCeE
Q 001343 542 TTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNI 619 (1096)
Q Consensus 542 ~~l~~s~-~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 619 (1096)
.+++|+| ++++|++++. ++.|++||+.+++.+..+.+|.. .+.+++|+|++ .++++++.||.|++|++.++..
T Consensus 266 ~~~~~s~~~~~~l~s~~~----dg~v~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 266 LSLDWCHQDEHLLLSSGR----DNTVLLWNPESAEQLSQFPARGN-WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp EEEEECSSCSSCEEEEES----SSEEEEECSSSCCEEEEEECSSS-CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred eEEEeCCCCCCeEEEEeC----CCCEEEeeCCCCccceeecCCCC-ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 9999999 9999999987 99999999999999999999887 88899999998 8999999999999999987653
Q ss_pred EEEeec--------------------C-------------CCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 620 LTSTDA--------------------E-------------GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 620 ~~~~~~--------------------~-------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
...... + .+...+.+++|+|+|++|++++.|+.|++|++.+.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 341 TLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp SSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 221100 0 02346779999999999999999999999998754
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1e-32 Score=319.81 Aligned_cols=319 Identities=19% Similarity=0.320 Sum_probs=271.1
Q ss_pred ccccCCCCE-EEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 401 IFKDVPISV-SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 401 ~~~~h~~~V-~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
.+.+|.+.| .| ++++|++|++|+.||.|++||+.+++.+. .+.+|.+.|++++|+ +. .+++|+.||+|++
T Consensus 113 ~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~v 183 (445)
T 2ovr_B 113 VLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKV 183 (445)
T ss_dssp EEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEE
T ss_pred EecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEE
Confidence 377898875 55 45568999999999999999999988766 578999999999998 44 8999999999999
Q ss_pred EE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
|| .+++.+..+.+|...|.++.++ +..+++|+.||+|++||+++++....+..|...|.++.+ +++++++++.
T Consensus 184 wd~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~ 257 (445)
T 2ovr_B 184 WNAETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY 257 (445)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET
T ss_pred EECCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC
Confidence 99 8899999999999999999984 358999999999999999999999999999999999999 7888999987
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
++.|++||+.+++.+..+.+|.. .+.++.| ++.++++++.||.|++||+.+++.+..+..+.. .+.++.+
T Consensus 258 ----dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~- 327 (445)
T 2ovr_B 258 ----DFMVKVWDPETETCLHTLQGHTN-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL- 327 (445)
T ss_dssp ----TSCEEEEEGGGTEEEEEECCCSS-CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE-
T ss_pred ----CCEEEEEECCCCcEeEEecCCCC-ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE-
Confidence 99999999999999999998887 7888888 788999999999999999999999988877654 6777666
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCC
Q 001343 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGV 718 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~ 718 (1096)
+++++++++.||.|++||+.++. ...
T Consensus 328 -~~~~l~~~~~dg~i~vwd~~~~~-~~~---------------------------------------------------- 353 (445)
T 2ovr_B 328 -KDNILVSGNADSTVKIWDIKTGQ-CLQ---------------------------------------------------- 353 (445)
T ss_dssp -ETTEEEEEETTSCEEEEETTTCC-EEE----------------------------------------------------
T ss_pred -eCCEEEEEeCCCeEEEEECCCCc-EEE----------------------------------------------------
Confidence 56799999999999999986541 000
Q ss_pred CCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCcc
Q 001343 719 DPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ 798 (1096)
Q Consensus 719 ~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~ 798 (1096)
.+.+
T Consensus 354 -------------------------------------~~~~--------------------------------------- 357 (445)
T 2ovr_B 354 -------------------------------------TLQG--------------------------------------- 357 (445)
T ss_dssp -------------------------------------EECS---------------------------------------
T ss_pred -------------------------------------EEcc---------------------------------------
Confidence 0000
Q ss_pred CCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEee-----cCCC
Q 001343 799 NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTF-----MSPP 872 (1096)
Q Consensus 799 ~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~-----~~h~ 872 (1096)
.. .|...|.+++|+ +++|++++ ||.|++||+.+++.+..+ .+|.
T Consensus 358 --------------------------~~--~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 407 (445)
T 2ovr_B 358 --------------------------PN--KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 407 (445)
T ss_dssp --------------------------TT--SCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGT
T ss_pred --------------------------CC--CCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCC
Confidence 00 155667777774 56788887 788999999888888877 4788
Q ss_pred CCeeEEEEecCCCcEEEEeeCCCe----EEEEeeccc
Q 001343 873 PASTFLAFHPQDNNIIAIGTEDST----IHIYNVRVD 905 (1096)
Q Consensus 873 ~~i~~l~~s~~d~~~l~s~~~dg~----i~iw~~~~~ 905 (1096)
+.|++++|+| ++.++++|+.||+ |.+||+...
T Consensus 408 ~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 408 GVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp CEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred ceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCCC
Confidence 8999999999 8999999999998 999998753
No 62
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.4e-34 Score=333.59 Aligned_cols=293 Identities=17% Similarity=0.236 Sum_probs=237.7
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~ 420 (1096)
.|...|+|++|||.+..+||+|+.||.|+|||+.+++.... ..+.+|.+.|++|+|+| ++++
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~-----------------~~~~gH~~~V~~l~f~p~~~~~ 179 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF-----------------IKGIGAGGSITGLKFNPLNTNQ 179 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE-----------------ECCCSSSCCCCEEEECSSCTTE
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE-----------------EEccCCCCCEEEEEEeCCCCCE
Confidence 48889999999996555899999999999999987764321 12678999999999998 7899
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEEE
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~ 500 (1096)
|++|+.||+|++||++++. .........+...+.+++|+|++. +|++|+.||.|++||.+++.+..+.+|...|+++
T Consensus 180 l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 180 FYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHV 256 (435)
T ss_dssp EEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEE
T ss_pred EEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccCcceeEEEecccceEEee
Confidence 9999999999999998753 332222334556788999999999 8999999999999997788889999999999999
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeee---EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV---DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
+|+|.. ..++++|+.||+|++||+++..... ....|...|.+++|+|+|++|++++. |+.|++||+.++...
T Consensus 257 ~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 257 ALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQWDCP 331 (435)
T ss_dssp EECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSSSSSE
T ss_pred eecCCC-ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCCCccc
Confidence 998754 2588899999999999998766543 33567789999999999999999997 999999999999888
Q ss_pred EEEcCcCcc-----ceEEEEEeCCCCEEEEEE------------cCCeEEEEeCCCCeEEEEeecCCCCCCccEE-EEeC
Q 001343 578 RTYAGFRKK-----SNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRL-RFSK 639 (1096)
Q Consensus 578 ~~~~~~~~~-----~i~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~-~~s~ 639 (1096)
..+..|... ......|+|++..+++++ .++.|++||..+++.+..+.... ...|.++ +|+|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~s~~~fsp 410 (435)
T 4e54_B 332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGISSLNEFNP 410 (435)
T ss_dssp EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCCCEEEECT
T ss_pred eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEEEEEEECC
Confidence 887665431 122356777777776664 34679999999999988775432 3367777 6999
Q ss_pred CCCEEEEEECCCcEEEEEcCCC
Q 001343 640 EGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 640 ~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+|.+|++|+ |+.|+||++.++
T Consensus 411 dg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 411 MGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TSSCEEEEC-SSEEEECCCC--
T ss_pred CCCEEEEEc-CCcEEEEECCcC
Confidence 999999876 779999999887
No 63
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=9.5e-34 Score=320.37 Aligned_cols=292 Identities=15% Similarity=0.109 Sum_probs=247.4
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCC--eeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD--RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 420 (1096)
|.++|++++|+|+|+ +||+|+.|+.|+|||+.+++ .+. .+.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-------------------ELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-------------------EEECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeee-------------------eecCCCCcccEEEEeCCCCE
Confidence 889999999999999 79999999999999998876 332 26789999999999999999
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCce---E-EEeeCCCC
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK---L-FNFEGHEA 495 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~---~-~~~~~~~~ 495 (1096)
|++++.||.|++||+.+++..... .+..|...|.+++|+|+++ +|++++.|+.|++|| ..+.. . ....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKPTL-VILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEE-ECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeeeeE-EeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 999999999999999887643322 3567999999999999999 899999999999999 55552 2 33367899
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcC------------------CCCeeeEEeCCCCcEEEEEEcCCCCEEEEEe
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYD------------------TMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
.|.+++|+| ++.+|++++.||.|++||++ .......+..|...|.+++|+|+++++++++
T Consensus 144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 999999977 66899999999999999954 5566677778888999999999999999998
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC--CeEE---------------
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNIL--------------- 620 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~--------------- 620 (1096)
. ++.|++||+.+++.+..+..|.. .+.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 222 ~----d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 222 H----DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp T----TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred C----CCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 7 99999999999999999998876 89999999999877777 999999999987 4311
Q ss_pred -----------------------EEeecCCCCCCccEEEEe-CCC---CEEEEEECCCcEEEEEcCCCccccc
Q 001343 621 -----------------------TSTDAEGGLPNLPRLRFS-KEG---NLLAVTTADNGFKILANAIGLRSLR 666 (1096)
Q Consensus 621 -----------------------~~~~~~~~~~~v~~~~~s-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~ 666 (1096)
..+. ..|...|++++|+ ++| .+|++++.||.|++|++.++.+.+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~~ 367 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALK 367 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCT
T ss_pred cchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHhhh
Confidence 1111 2445589999976 576 9999999999999999987644433
No 64
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=2.5e-32 Score=349.93 Aligned_cols=514 Identities=12% Similarity=0.023 Sum_probs=366.4
Q ss_pred ceeecCCCce-eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCC------CeEEEEecCCCCeeecccceeec
Q 001343 317 EVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN------GEITLWELAMRDRLVSKPFKIWD 389 (1096)
Q Consensus 317 ~v~~~~~~~~-~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~d------g~I~iwd~~~~~~~~~~~~~~~~ 389 (1096)
.++|...... +|+.+ .+.......|...|.+++|||||+ .||.++.+ ..|.+|++.+++...
T Consensus 26 ~iaf~~~~~l~~~~~~--gg~~~~lt~~~~~v~~~~~SPDG~-~la~~s~~~~~~~~~~i~~~d~~~g~~~~-------- 94 (1045)
T 1k32_A 26 RIIFVCCDDLWEHDLK--SGSTRKIVSNLGVINNARFFPDGR-KIAIRVMRGSSLNTADLYFYNGENGEIKR-------- 94 (1045)
T ss_dssp EEEEEETTEEEEEETT--TCCEEEEECSSSEEEEEEECTTSS-EEEEEEEESTTCCEEEEEEEETTTTEEEE--------
T ss_pred EEEEEECCcEEEEECC--CCcEEEeeeCCCcccCeEECCCCC-EEEEEEeeccCCCCCeEEEEECCCCCeEE--------
Confidence 4666655432 45544 445555567999999999999999 47766433 489999998876432
Q ss_pred ccccCccccccccccCCCCE-------EEEEEcCCCCEEEEEECC------CeEEEEEccCCCccccceeecccccCEEE
Q 001343 390 MAACSLPFQASIFKDVPISV-------SRVAWSPDGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVND 456 (1096)
Q Consensus 390 ~~~~~~~~~~~~~~~h~~~V-------~~l~~spd~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~l~~h~~~v~~ 456 (1096)
+..|...+ .+++|||||+.+++++.+ ..|.+|++.+++... +..+. ...
T Consensus 95 ------------lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~--~~~ 156 (1045)
T 1k32_A 95 ------------ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNLGP--ATH 156 (1045)
T ss_dssp ------------CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCSCS--CSE
T ss_pred ------------cccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE----ecCCC--cce
Confidence 66788888 999999999977777654 368888887765432 32332 346
Q ss_pred EEEecCCCcEEEEEEeC------------CCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEE
Q 001343 457 LAFAYPNKLLCVVTCGD------------DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523 (1096)
Q Consensus 457 l~~s~d~~~~~l~s~s~------------d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 523 (1096)
++|+| | ++++++. +...++|. ..+.....+.+|...+.++.|++ + .++++++.||.+++|
T Consensus 157 ~~~sp-G---~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~--d-~l~~~~~~dg~~~l~ 229 (1045)
T 1k32_A 157 ILFAD-G---RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG--H-RIYFITDIDGFGQIY 229 (1045)
T ss_dssp EEEET-T---EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET--T-EEEEEECTTSSCEEE
T ss_pred eeeCC-C---EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeC--C-EEEEEEeccCceEEE
Confidence 77999 6 4666652 34567776 44456667789999999999965 4 577788889999999
Q ss_pred EcCCC-CeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC----------ccceEEEE
Q 001343 524 LYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR----------KKSNGVVQ 592 (1096)
Q Consensus 524 d~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~i~~~~ 592 (1096)
.++.. .....+..+. .+...+|+|||+.++.+. ++.|++||...... ..+.++. ...+..++
T Consensus 230 ~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-----~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~ 302 (1045)
T 1k32_A 230 STDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-----GGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAED 302 (1045)
T ss_dssp EEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-----TTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEE
T ss_pred EEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-----CCEEEEecCCceEe-eeeccCcccccccccccccccceee
Confidence 87653 3333444443 466779999999998874 88999999954443 3554421 11477899
Q ss_pred Ee-CCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCC-CccEEEEeCCCCEEEEEECCCcEE-EEEcCCCcccccccc
Q 001343 593 FD-TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP-NLPRLRFSKEGNLLAVTTADNGFK-ILANAIGLRSLRAVE 669 (1096)
Q Consensus 593 ~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~ 669 (1096)
|+ |+|+.+++++ ++.|++|+...+.... +.. +.. .+..++|+ +|+.+++++.++.+. +|++.++. .
T Consensus 303 ~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~--~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~-~----- 371 (1045)
T 1k32_A 303 FSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPE--PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK-A----- 371 (1045)
T ss_dssp EEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSC--CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC-E-----
T ss_pred ecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccC--CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC-c-----
Confidence 99 9999998887 7899999998877554 322 223 67889999 999999998877777 77765431 0
Q ss_pred CCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecC
Q 001343 670 NPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDS 749 (1096)
Q Consensus 670 ~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~ 749 (1096)
T Consensus 372 -------------------------------------------------------------------------------- 371 (1045)
T 1k32_A 372 -------------------------------------------------------------------------------- 371 (1045)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCC
Q 001343 750 GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 829 (1096)
Q Consensus 750 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~ 829 (1096)
. .+.+ +...+..++|+|||+.|++++.++.+++|++.. ++... .+.+
T Consensus 372 ---~--~l~~---~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t----------------------g~~~~-~~~~-- 418 (1045)
T 1k32_A 372 ---E--KFEE---NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET----------------------GKPTV-IERS-- 418 (1045)
T ss_dssp ---E--ECCC---CCCSEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------CCEEE-EEEC--
T ss_pred ---e--EecC---CccceeeeEECCCCCEEEEECCCCeEEEEECCC----------------------CceEE-eccC--
Confidence 0 0112 556788999999999999999999999988632 33222 1223
Q ss_pred cCCCeeeeeecCCCcEEEEec-CC----------eEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEE
Q 001343 830 LEEAVPCIALSKNDSYVMSAT-GG----------KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898 (1096)
Q Consensus 830 ~~~~v~~l~~s~dg~~la~~~-dg----------~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~ 898 (1096)
|...+.+++|||||++||+++ ++ .|++||+.+++ +..+..|...+..++|+| ||++|++++.++...
T Consensus 419 ~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~sp-dG~~l~~~s~~~~~~ 496 (1045)
T 1k32_A 419 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDA-DSKNLYYLSYRSLDP 496 (1045)
T ss_dssp SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECT-TSCEEEEEESCCCCC
T ss_pred CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcC-CCCEEEEEecccCCc
Confidence 778889999999999998876 33 79999998887 677888888899999999 999999999988888
Q ss_pred EEeecccee------eeeec--c--ccc-----------------cc-cceeeecCCCCCCCCCceEEEecCCcEEEE--
Q 001343 899 IYNVRVDEL------CVWSI--D--TWE-----------------KR-KSVTIHIPAGKTPTGDTRVQFNADQVRMLV-- 948 (1096)
Q Consensus 899 iw~~~~~~~------~~w~~--~--~~~-----------------~~-~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-- 948 (1096)
+|+...... ..|.+ . ... .. ....+..+..+.. .+..++|+|||+.+++
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~-~~~~~~~s~dg~~~~~~~ 575 (1045)
T 1k32_A 497 SPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG-DYRMIIPLESSILIYSVP 575 (1045)
T ss_dssp EECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCB-CEEEEEECSSEEEEEECC
T ss_pred CcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCC-ChhheEEcCCCeEEEEec
Confidence 887654331 01100 0 000 00 0011222333433 6889999999997874
Q ss_pred ------------EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCc
Q 001343 949 ------------VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1008 (1096)
Q Consensus 949 ------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~ 1008 (1096)
.....|.+||+.+++.. .+. ..+.+++|||||++|++++.| .|++||+.+++
T Consensus 576 ~~g~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 576 VHGEFAAYYQGAPEKGVLLKYDVKTRKVT-EVK------NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CCCSHHHHHHCCCCCEEEEEEETTTCCEE-EEE------EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred ccCcccccccccCCCceEEEEECCCCcEE-Eee------cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 13557899999888742 222 347889999999999988876 89999998876
No 65
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=317.68 Aligned_cols=294 Identities=13% Similarity=0.203 Sum_probs=244.6
Q ss_pred eEEeec-CCCceEEEEEcCCCCcEEEEEeC---CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEE
Q 001343 337 VAVSLH-QGSTVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1096)
Q Consensus 337 ~~~~l~-h~~~V~~v~fsp~g~~llasg~~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1096)
+.+.+. |...|++++|+|++.+++++|+. ||.|+|||+.+++.... ...+|...|.++
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~v~~~ 71 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------------------REIEKAKPIKCG 71 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------------------EEEEESSCEEEE
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------------------eeecccCcEEEE
Confidence 334444 99999999999999877888877 99999999998876532 123689999999
Q ss_pred EEcCC---CCEEEEEECCCeEEEEEccCCC-ccccceeecccccCEEEEEE------ecCCCcEEEEEEeCCCcEEEEE-
Q 001343 413 AWSPD---GNYVGVAFTKHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAF------AYPNKLLCVVTCGDDKLIKVWE- 481 (1096)
Q Consensus 413 ~~spd---~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~l~~h~~~v~~l~~------s~d~~~~~l~s~s~d~~i~iwd- 481 (1096)
+|+|+ +++|++|+.||.|++||+.+++ .+. .+.+|...|.++.| +|+++ .|++++.|+.|++||
T Consensus 72 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~ 146 (357)
T 3i2n_A 72 TFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDP 146 (357)
T ss_dssp ECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECT
T ss_pred EEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeC
Confidence 99998 7999999999999999999887 444 57899999999965 67888 899999999999999
Q ss_pred cCCc-eEEEeeCCCC----CeEEEEeee--cCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcC---CCC
Q 001343 482 LSGR-KLFNFEGHEA----PVYSICPHH--KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA---DGS 551 (1096)
Q Consensus 482 ~~~~-~~~~~~~~~~----~v~~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~---~~~ 551 (1096)
.+++ .+..+..|.+ .+.+++|.+ .+++.++++++.||.|++||+++.+... ...+...|.+++|+| ++.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~ 225 (357)
T 3i2n_A 147 RQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMN 225 (357)
T ss_dssp TSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCC
T ss_pred CCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCC
Confidence 6665 6778876655 788888422 3367899999999999999999877644 456677899999999 999
Q ss_pred EEEEEeeccCCCCeEEEEeCCCCeeeEEEc-----CcCccceEEEEEeCCCC-EEEEEEcCCeEEEEeCCCC--------
Q 001343 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYA-----GFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV-------- 617 (1096)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~-------- 617 (1096)
++++++. ++.|++||+++++....+. +|.. .+.+++|+|++. ++++++.||.|++||+..+
T Consensus 226 ~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 300 (357)
T 3i2n_A 226 KLVATSL----EGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS 300 (357)
T ss_dssp EEEEEES----TTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCT
T ss_pred EEEEECC----CCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccC
Confidence 9999987 9999999999887666554 7766 899999999998 8999999999999999754
Q ss_pred -----------eEEEEeecCCCCCCccEEEEeCCCCEEE-EEECCCcEEEEEcCCC
Q 001343 618 -----------NILTSTDAEGGLPNLPRLRFSKEGNLLA-VTTADNGFKILANAIG 661 (1096)
Q Consensus 618 -----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~ 661 (1096)
+.+..+..+.. .|.+++|+|++++|+ +++.|+.|++|++.+.
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 301 EGIEMGVAGSVSLLQNVTLSTQ--PISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp TSCCCCCCCEEEEEEEEECCSS--CEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred CCCccccccccceeeccccCCC--CeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 34556666644 899999999999998 8999999999999765
No 66
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2e-32 Score=319.45 Aligned_cols=319 Identities=18% Similarity=0.292 Sum_probs=270.9
Q ss_pred cccCCCCE-EEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 402 FKDVPISV-SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 402 ~~~h~~~V-~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
+.+|...| .++.+ ++++|++|+.||+|++||+.+++.+. .+.+|.+.|++++|++++ .|++|+.||+|++|
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVW 188 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEEE
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEEE
Confidence 67788774 66666 57899999999999999999987666 578999999999999877 69999999999999
Q ss_pred E-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe-----------------------eeEEeC
Q 001343 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-----------------------RVDYDA 536 (1096)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------------------~~~~~~ 536 (1096)
| .+++++..+.+|...|.+++|++.+++.++++|+.||+|++||+++... ...+..
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 9 8899999999999999999999877889999999999999999987653 234556
Q ss_pred CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 537 ~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
|...+.++ +++++++++++. ++.|++||+.+++.+..+.+|.. .+.+++|+|+++.+++|+.||.|++||+.+
T Consensus 269 ~~~~v~~~--~~~~~~l~~~~~----d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 269 HMASVRTV--SGHGNIVVSGSY----DNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp CSSCEEEE--EEETTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred ccceEEEE--cCCCCEEEEEeC----CCeEEEEECCCCcEEEEecCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 66677766 578899999987 99999999999999999999887 899999999999999999999999999999
Q ss_pred CeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecC
Q 001343 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (1096)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~ 696 (1096)
++.+..+..|.. .|.+++|+ +.++++++.||.|++||+.++..
T Consensus 342 ~~~~~~~~~h~~--~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~--------------------------------- 384 (464)
T 3v7d_B 342 GELMYTLQGHTA--LVGLLRLS--DKFLVSAAADGSIRGWDANDYSR--------------------------------- 384 (464)
T ss_dssp TEEEEEECCCSS--CEEEEEEC--SSEEEEEETTSEEEEEETTTCCE---------------------------------
T ss_pred CcEEEEEeCCCC--cEEEEEEc--CCEEEEEeCCCcEEEEECCCCce---------------------------------
Confidence 999999887755 88999987 57999999999999999754300
Q ss_pred CCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCC
Q 001343 697 TPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA 776 (1096)
Q Consensus 697 s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 776 (1096)
T Consensus 385 -------------------------------------------------------------------------------- 384 (464)
T 3v7d_B 385 -------------------------------------------------------------------------------- 384 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEE
Q 001343 777 VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISL 856 (1096)
Q Consensus 777 ~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~i 856 (1096)
.... .+...+..++|++++++|+++++|.|++
T Consensus 385 --~~~~----------------------------------------------~~~~~~~~~~~~~~~~~l~~~~dg~i~i 416 (464)
T 3v7d_B 385 --KFSY----------------------------------------------HHTNLSAITTFYVSDNILVSGSENQFNI 416 (464)
T ss_dssp --EEEE----------------------------------------------ECTTCCCEEEEEECSSEEEEEETTEEEE
T ss_pred --eeee----------------------------------------------cCCCCccEEEEEeCCCEEEEecCCeEEE
Confidence 0000 0233455678899999999999999999
Q ss_pred EEcccceEEEe-ecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEee
Q 001343 857 FNMMTFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNV 902 (1096)
Q Consensus 857 wd~~~~~~~~~-~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~ 902 (1096)
||+.+++.+.. +..|...|.+++|+. ..++++++.||.+.+|-+
T Consensus 417 wd~~~g~~~~~~~~~~~~~v~~v~~~~--~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 417 YNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EETTTCCEEESCTTTTCSEEEEEEEET--TEEEEEEEETTEEEEEEE
T ss_pred EECCCCcEEehhhccCCCcEEEEEecC--CEEEEEEEeCCeEEEEEe
Confidence 99999999986 678899999999974 667777788887766644
No 67
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.7e-32 Score=305.68 Aligned_cols=298 Identities=17% Similarity=0.264 Sum_probs=247.2
Q ss_pred ccccCCCCEEEEEEcCC-CCEEEEEECCCeEEEEEccCCCcc--ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcE
Q 001343 401 IFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd-~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i 477 (1096)
.|.||.+.|++|+|+|+ +++||||+.|++|+|||+.+++.. .....+.+|...|.+++|+|+++ +|++++.|+.|
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i 110 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTL 110 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccc
Confidence 48899999999999997 689999999999999999876543 22346789999999999999999 89999999999
Q ss_pred EEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEeCCCCcEEEEEEcCCC--CEE
Q 001343 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADG--SRL 553 (1096)
Q Consensus 478 ~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~--~~l 553 (1096)
++|+ ..+........+...+..+.+.+ ++.+|++++.||.+++||........ ....+...+..++|++++ ..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred eEEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 9999 77888888888888888888866 56799999999999999987655433 345677789999998875 456
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCcc
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1096)
++++. ++.|++||+.+++.+..+.+|.. .|.+++|+|++++|++|+.||.|++||+.+.+.+..+..+. .|.
T Consensus 189 ~s~~~----d~~i~i~d~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v~ 260 (340)
T 4aow_A 189 VSCGW----DKLVKVWNLANCKLKTNHIGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD---IIN 260 (340)
T ss_dssp EEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS---CEE
T ss_pred EEEcC----CCEEEEEECCCCceeeEecCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc---eEE
Confidence 67765 89999999999999999999987 89999999999999999999999999999999998887653 789
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCC
Q 001343 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSP 713 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~ 713 (1096)
++.|+|++.++ +++.|+.|++||+.++ .....+...
T Consensus 261 ~~~~~~~~~~~-~~~~d~~i~iwd~~~~-~~~~~~~~~------------------------------------------ 296 (340)
T 4aow_A 261 ALCFSPNRYWL-CAATGPSIKIWDLEGK-IIVDELKQE------------------------------------------ 296 (340)
T ss_dssp EEEECSSSSEE-EEEETTEEEEEETTTT-EEEEEECCC------------------------------------------
T ss_pred eeecCCCCcee-eccCCCEEEEEECCCC-eEEEecccc------------------------------------------
Confidence 99999988655 5567899999998765 222221111
Q ss_pred cccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeec
Q 001343 714 IINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 793 (1096)
Q Consensus 714 ~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~ 793 (1096)
.......+ |...|.+++|+|++++|++++.||.|++|++
T Consensus 297 --------------------------------------~~~~~~~~---h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 297 --------------------------------------VISTSSKA---EPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp ---------------------------------------------C---CCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred --------------------------------------ceeeeccC---CCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 00011223 8889999999999999999999999999997
Q ss_pred cC
Q 001343 794 HR 795 (1096)
Q Consensus 794 ~~ 795 (1096)
..
T Consensus 336 ~t 337 (340)
T 4aow_A 336 TI 337 (340)
T ss_dssp EC
T ss_pred CC
Confidence 54
No 68
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=7.2e-34 Score=320.51 Aligned_cols=290 Identities=15% Similarity=0.236 Sum_probs=244.9
Q ss_pred cCCCceEEEEEcCC---CCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC-
Q 001343 342 HQGSTVISMDFHPS---HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD- 417 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~---g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 417 (1096)
+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.. + .......|...|.+++|+|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~--~------------~~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--L------------QSYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE--E------------EEEECSCTTCCEEEEEEEECT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe--e------------eeccccCCCCcEEEEEeccCC
Confidence 49999999999994 444566677788999999998876542 1 11112237789999999999
Q ss_pred ---CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEec-CCCcEEEEEEeCCCcEEEEE-cCCceEEEe--
Q 001343 418 ---GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-- 490 (1096)
Q Consensus 418 ---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~-d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-- 490 (1096)
+++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++|+.||.|++|| .+++.+..+
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 6799999999999999999987766 5778999999999999 788 899999999999999 888888888
Q ss_pred -eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe----------------------------CCCCcE
Q 001343 491 -EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD----------------------------APGHWC 541 (1096)
Q Consensus 491 -~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------------------------~~~~~i 541 (1096)
.+|...|.+++|+| ++.+|++++.||.|++||+++.+....+. .+...|
T Consensus 157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 78999999999977 66899999999999999998765433222 377899
Q ss_pred EEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee--------------eEEEcCcCccceEEEEEeCC--CCEEEEEEc
Q 001343 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--------------KRTYAGFRKKSNGVVQFDTT--QNHFLAVGE 605 (1096)
Q Consensus 542 ~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~--------------~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~ 605 (1096)
.+++|+ ++++++++. ++.|++||+.++.. +..+.+|.. .+.+++|+|+ +++|++++.
T Consensus 235 ~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 235 DCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECT
T ss_pred EEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEec
Confidence 999998 779999887 99999999987643 777888876 7888999999 999999999
Q ss_pred CCeEEEEeCCCCe----EEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 606 DSQIKFWDMDNVN----ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 606 dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
||.|++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999875 44467766545689999999999999999999999999985
No 69
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-33 Score=322.78 Aligned_cols=298 Identities=13% Similarity=0.189 Sum_probs=245.0
Q ss_pred CCcceEEee-c-CCCceEEEEEcC-CCCcEEEEEeCCCeEEEEecCC---CCeeecccceeecccccCccccccccccCC
Q 001343 333 LPRTVAVSL-H-QGSTVISMDFHP-SHQTLLLVGSSNGEITLWELAM---RDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1096)
Q Consensus 333 ~~~~~~~~l-~-h~~~V~~v~fsp-~g~~llasg~~dg~I~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1096)
..++++..+ . |.+.|++++|+| +|+ +||+|+.||+|+|||+.+ +..... ....+|.
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~-----------------~~~~~h~ 111 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS-----------------SLTYDCS 111 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC-----------------SEEEECS
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce-----------------eeeccCC
Confidence 456777777 4 889999999999 998 799999999999999977 432110 0122599
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEcc---CCCccccce-------eecc--cccCEEEEE--EecCCCcEEEEEEe
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYA---GSNDLRQHS-------QIDA--HVGAVNDLA--FAYPNKLLCVVTCG 472 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~---~~~~~~~~~-------~l~~--h~~~v~~l~--~s~d~~~~~l~s~s 472 (1096)
..|.+++|+|++++|++|+.||.|++||+. +++...... .+.. +...+.++. +++++. +|++|+
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~ 189 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS--LLVALT 189 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE--EEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC--EEEEEe
Confidence 999999999999999999999999999995 444433110 1112 566777777 457777 899999
Q ss_pred CCCcEEEEE-cCCceEEEeeC--CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe-CCCCcEEEEEEc-
Q 001343 473 DDKLIKVWE-LSGRKLFNFEG--HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYS- 547 (1096)
Q Consensus 473 ~d~~i~iwd-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s- 547 (1096)
.|+.|++|| .+++++..+.+ |...|++++|+| ++.+|++|+.||.|++||++++.....+. .+...|.+++++
T Consensus 190 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 267 (437)
T 3gre_A 190 NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE--ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQ 267 (437)
T ss_dssp TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT--TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECT
T ss_pred CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC--CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecc
Confidence 999999999 89999999998 899999999977 56899999999999999999988877775 666689999665
Q ss_pred ---CCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC-------------------------ccceEEEEEeCCCCE
Q 001343 548 ---ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-------------------------KKSNGVVQFDTTQNH 599 (1096)
Q Consensus 548 ---~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-------------------------~~~i~~~~~~~~~~~ 599 (1096)
+++.++++++. ++.|++||+.+++.+..+.++. ...+.+++|+ ++++
T Consensus 268 ~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~ 342 (437)
T 3gre_A 268 FYGKNSVIVVGGSS----KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKI 342 (437)
T ss_dssp TTCTTEEEEEEEST----TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEE
T ss_pred ccCCCccEEEEEcC----CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceE
Confidence 46778999886 9999999999999998887652 2357788999 7789
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEEeecCC-----------------------------------CCCCccEEEEeCC--CC
Q 001343 600 FLAVGEDSQIKFWDMDNVNILTSTDAEG-----------------------------------GLPNLPRLRFSKE--GN 642 (1096)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------------------~~~~v~~~~~s~~--~~ 642 (1096)
|++|+.||.|++||+.+++....+..+. +...|++++|+++ +.
T Consensus 343 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~ 422 (437)
T 3gre_A 343 LLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETP 422 (437)
T ss_dssp EEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSE
T ss_pred EEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCce
Confidence 9999999999999999988777766531 4558999999998 78
Q ss_pred EEEEEECCCcEEEEE
Q 001343 643 LLAVTTADNGFKILA 657 (1096)
Q Consensus 643 ~l~~~~~dg~i~iwd 657 (1096)
+|++|+.||.|++|+
T Consensus 423 ~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 423 LLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEETTSCEEEEC
T ss_pred EEEEEcCCceEEEeC
Confidence 999999999999995
No 70
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-34 Score=317.91 Aligned_cols=315 Identities=11% Similarity=0.070 Sum_probs=245.3
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
-...|.+|+|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg---- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE---- 64 (588)
T ss_dssp CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC----
T ss_pred hhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC----
Confidence 356899999999999 799999999999 6444332 46799999999999998
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCC-----Ce
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEA-----PV 497 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~-----~v 497 (1096)
.++.+.+|+.+....+ .+ +|...|.+++|+|||+ .|++++.||.|++||..+ ++..+. |.. .|
T Consensus 65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv 132 (588)
T 2j04_A 65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTY 132 (588)
T ss_dssp ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCE
T ss_pred ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccE
Confidence 4555555554332211 12 5688999999999999 899999999999999444 677777 765 49
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe-------eeEE----eCCCCcEEEEEEcCCCCEEEEEeeccCCCCeE
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-------RVDY----DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~----~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i 566 (1096)
.+++|+| +|++|++|+.||+|++||+..+.. ...+ .+|...|.+++|+|+| +++++. |+.+
T Consensus 133 ~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~tV 204 (588)
T 2j04_A 133 HCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNSV 204 (588)
T ss_dssp EEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCCE
T ss_pred EEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCeE
Confidence 9999977 779999999999999999998752 3454 5566799999999999 666665 9999
Q ss_pred EEEeCCCCee---eEEEc-CcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEE--eCC
Q 001343 567 VEWNESEGTI---KRTYA-GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF--SKE 640 (1096)
Q Consensus 567 ~iwd~~~~~~---~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--s~~ 640 (1096)
++||+.++.. .+++. +|.. .|..++|+ +..+++++ ++.|++||+.+++......+| ...|..++| +|+
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~~-~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh--~~~V~~va~~~s~d 278 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASRR-KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGS--LENFHIIPLNHEKE 278 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCSS-CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSC--CSCCCEEEETTCSS
T ss_pred EEEECCCCccccceeeecccccC-cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCC--CceEEEEEeeeCCC
Confidence 9999988773 35664 5554 88899999 68888887 699999999988875444344 448999999 999
Q ss_pred CCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCC
Q 001343 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720 (1096)
Q Consensus 641 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~ 720 (1096)
+..+++++.||+ ++|... .++++|++.
T Consensus 279 ~~~La~a~edG~-klw~~d----------------------~~~~spd~~------------------------------ 305 (588)
T 2j04_A 279 STILLMSNKTSY-KVLLED----------------------ELHVTADNI------------------------------ 305 (588)
T ss_dssp CEEEEECSSCEE-EEEESS----------------------SEEEECCCS------------------------------
T ss_pred CCEEEEEcCCCC-EEEeec----------------------cEEECCCce------------------------------
Confidence 999999999999 999875 144655554
Q ss_pred ccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeec
Q 001343 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS 784 (1096)
Q Consensus 721 ~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 784 (1096)
.+++. |+++++|+.. .+... .-+ +...|.+++|||||+.+++++.
T Consensus 306 -------l~a~~--d~~v~lW~~~----g~~l~---~~~---~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 306 -------IAPYL--EKKFKKWSTI----WNEFN---NYE---TTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp -------SHHHH--HHHHHHTTTT----TTSSS---SSC---CEEEEEEEEECTTSSEEEEEEE
T ss_pred -------EEEEc--CCEEEEEECC----CCcee---eec---cceEEEEEEECCCCCEEEEEEe
Confidence 44554 6999999975 22211 111 4567999999999997766654
No 71
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.1e-34 Score=324.89 Aligned_cols=285 Identities=13% Similarity=0.090 Sum_probs=225.6
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCC--CeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR--DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 420 (1096)
|.++|+|++|+|+|+ +||+|+.|+.|+|||+.++ +.+. .+.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence 667999999999999 7999999999999999987 3332 37789999999999999999
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc---eEEEeeC-CCC
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEG-HEA 495 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~---~~~~~~~-~~~ 495 (1096)
|++|+.|+.|++||+.+++.......+.+|...|++++|+|+++ +|++|+.|+.|++|| ..++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998873333345778999999999999999 899999999999999 6655 4677887 999
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC------------------CeeeEEeCCCCcEEEEEEcCCCCEEEEEe
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM------------------GSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------------------~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
.|.+++|+| ++.+|++++.||.|++||++.. .....+ .|...|.+++|+|++++|++++
T Consensus 148 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 999999987 6689999999999999998632 233334 7778999999999999999998
Q ss_pred eccCCCCeEEEEeCCCCee----eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe---------------
Q 001343 558 TSKDGDSFLVEWNESEGTI----KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN--------------- 618 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------- 618 (1096)
. ++.|++||+.+++. +..+.+|.. .+.+++|+|++.+|++++.++.+ +|+.....
T Consensus 225 ~----d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 225 H----DSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp T----TTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred C----CCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 7 99999999999887 788888877 89999999999998888766655 66654211
Q ss_pred ------------------------EEEEeec-----------CCCCCCccEEEEeCCC-C---EEEEEECCCcEEEEEc
Q 001343 619 ------------------------ILTSTDA-----------EGGLPNLPRLRFSKEG-N---LLAVTTADNGFKILAN 658 (1096)
Q Consensus 619 ------------------------~~~~~~~-----------~~~~~~v~~~~~s~~~-~---~l~~~~~dg~i~iwd~ 658 (1096)
....... ..|...|+++++.+.. . .|++++.||.|++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000000 0145589999976643 3 6999999999999985
No 72
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=8.1e-32 Score=309.10 Aligned_cols=281 Identities=15% Similarity=0.255 Sum_probs=242.2
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~ 425 (1096)
.+++|+||+++ +||+|. |++|+|||..+|+..... .+.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~-----------------~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCcEEEEEECCCCCEEEEEE
Confidence 46789999864 688874 999999999999876421 1567889999999999999999999
Q ss_pred CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceEEEeeCCCCCeEEEEee
Q 001343 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPH 503 (1096)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~~~~~v~~~~~~ 503 (1096)
.||.|+|||+.+++.++ .+.+|...+.++.++ +. .|++|+.|+.+++|| .....+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999988776 578999999998886 45 899999999999999 4466778899999999999997
Q ss_pred ecCCCcEEEEEECCCeEEEEEcCCCCe----eeEEeCCCCcEEEEEEcCCCCEEE-EEeeccCCCCeEEEEeCCCCeeeE
Q 001343 504 HKENIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSADGSRLF-SCGTSKDGDSFLVEWNESEGTIKR 578 (1096)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~~~~l~-~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1096)
+ ++.++++++.||.+++|+..+++. ......+...|.+++|+|++..++ +++. ..|+.|++||+.+++...
T Consensus 240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 6 668999999999999999987653 346677888999999999776554 4432 238999999999999999
Q ss_pred EEcCcCccceEEEEEeCCCCEEEEEE--cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEE
Q 001343 579 TYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1096)
Q Consensus 579 ~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1096)
.+..+. .+..+.|+++++.+++++ .|+.|++||+.+++.+..+.+|.. .|.+++|+|+|.+|++|+.|++|++|
T Consensus 316 ~~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~--~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 316 AVDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp EEECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred eecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 988765 577899999999998876 789999999999999999988765 89999999999999999999999999
Q ss_pred EcCCC
Q 001343 657 ANAIG 661 (1096)
Q Consensus 657 d~~~~ 661 (1096)
|+.+.
T Consensus 392 dv~~~ 396 (420)
T 4gga_A 392 RCFEL 396 (420)
T ss_dssp CCSCS
T ss_pred ECCCC
Confidence 98765
No 73
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.8e-32 Score=307.80 Aligned_cols=288 Identities=14% Similarity=0.230 Sum_probs=242.7
Q ss_pred cCCCc--eEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC
Q 001343 342 HQGST--VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1096)
Q Consensus 342 ~h~~~--V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~ 419 (1096)
+|... +.+++|++ .. +++++.|+.|+|||+.+++.... ....|...|.+++|+|+++
T Consensus 89 ~~~~~~~~~~~~~s~--~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s~~~~ 147 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWSHDGS 147 (401)
T ss_dssp TCCCCTTCBCEEECT--TS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEECTTSS
T ss_pred CCcCCceEEEEeecC--CC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEECCCCC
Confidence 45555 45566665 43 66677999999999999887642 1223889999999999999
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c-CCceEEEeeCCCCCe
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFNFEGHEAPV 497 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~-~~~~~~~~~~~~~~v 497 (1096)
+|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. .|++|+.||.|++|| . .+..+..+.+|...|
T Consensus 148 ~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 220 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV 220 (401)
T ss_dssp EEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred EEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCe
Confidence 99999999999999999987666 577999999999994 45 899999999999999 4 577788999999999
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
.+++|++ ++.+|++|+.||.|++||+++......+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.+
T Consensus 221 ~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 221 CGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARV 297 (401)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEE
T ss_pred eEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEE
Confidence 9999987 6689999999999999999999988888899999999999998765554331 112899999999999999
Q ss_pred EEEcCcCccceEEEEEeCCCCEEEEEE--cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEE
Q 001343 578 RTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1096)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 655 (1096)
..+..+ . .+.+++|+|+++.+++++ .||.|++|++.+++.........+...|.+++|+|++.+|++++.||.|++
T Consensus 298 ~~~~~~-~-~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~i 375 (401)
T 4aez_A 298 NTVDAG-S-QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKF 375 (401)
T ss_dssp EEEECS-S-CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEE
T ss_pred EEEeCC-C-cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 988643 3 789999999999999954 899999999999877666544444558999999999999999999999999
Q ss_pred EEcCCCc
Q 001343 656 LANAIGL 662 (1096)
Q Consensus 656 wd~~~~~ 662 (1096)
|++.++.
T Consensus 376 w~~~~~~ 382 (401)
T 4aez_A 376 WRVYDGD 382 (401)
T ss_dssp EECCC--
T ss_pred EECCCCc
Confidence 9998874
No 74
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-31 Score=302.31 Aligned_cols=300 Identities=12% Similarity=0.159 Sum_probs=252.6
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
.+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.|+.|++|
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW 101 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 488999999999999999999999999999999999987766 5789999999999999999 89999999999999
Q ss_pred E-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC-----CeEEEEEcCCCCe-----------eeEEeCCCC--cE
Q 001343 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGS-----------RVDYDAPGH--WC 541 (1096)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~-----------~~~~~~~~~--~i 541 (1096)
| .+++.+..+. +..+|.+++|++ ++.++++++.+ |.|++||+..... ...+..+.. .+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred ECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 9 8888888888 889999999977 66899999999 9999999986542 234444544 89
Q ss_pred EEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC-CeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 001343 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1096)
Q Consensus 542 ~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1096)
.+++|+|+++++++++. ++.|++||+.+ ++.+..+..|.. .+.+++|+|++.+|++++.||.|++||+.+++.+
T Consensus 179 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp EEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence 99999999999999986 89999999998 788889998877 8999999999999999999999999999999999
Q ss_pred EEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCc
Q 001343 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1096)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~ 700 (1096)
..+... ..+..++|+|++.++++++.++.+.+|.....
T Consensus 254 ~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------------------------------------- 291 (369)
T 3zwl_B 254 KKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSAN--------------------------------------- 291 (369)
T ss_dssp EEEECS---SCEEEEEECSSSSEEEEEECCC-------------------------------------------------
T ss_pred eeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecC---------------------------------------
Confidence 888733 37999999999999999999987777654322
Q ss_pred eeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEE
Q 001343 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 780 (1096)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 780 (1096)
.....+++|+.. ...... .+.+ |...|.+++|+|+++.|+
T Consensus 292 --------------------------------~~~~~i~~~d~~----~~~~~~-~~~~---~~~~v~~~~~s~~~~~l~ 331 (369)
T 3zwl_B 292 --------------------------------EGKFEARFYHKI----FEEEIG-RVQG---HFGPLNTVAISPQGTSYA 331 (369)
T ss_dssp -----------------------------------CEEEEEETT----TCCEEE-EEEC---CSSCEEEEEECTTSSEEE
T ss_pred --------------------------------CCcceeEEEecC----CCcchh-heec---ccCcEEEEEECCCCCEEE
Confidence 001356777765 233222 4455 899999999999999999
Q ss_pred EeecCCeEEEeeccC
Q 001343 781 ALGSNGVQKLWKWHR 795 (1096)
Q Consensus 781 ~~~~dg~v~vw~~~~ 795 (1096)
+++.||.|++|++..
T Consensus 332 s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 332 SGGEDGFIRLHHFEK 346 (369)
T ss_dssp EEETTSEEEEEEECH
T ss_pred EEcCCCeEEEEECcc
Confidence 999999999999854
No 75
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.5e-32 Score=307.46 Aligned_cols=300 Identities=11% Similarity=0.118 Sum_probs=229.9
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCC-------CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSN-------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~d-------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
-..+|+|++|+|||+ +||+|+.+ +.|+||++..+.......+. ......+.+|...|.+++++
T Consensus 13 ~g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~~~ 82 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAIDAS 82 (365)
T ss_dssp CSSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEEEE
T ss_pred CCCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEEeC
Confidence 456899999999998 79998754 35999999876543211110 00111367888999988775
Q ss_pred CCCCEEEEEE-----------CCCeEEEEEccCCCccccc------eeecccccCEEEEEEecCCCcEEEEEEeCCCcEE
Q 001343 416 PDGNYVGVAF-----------TKHLIQLYSYAGSNDLRQH------SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 416 pd~~~l~s~~-----------~dg~i~vwd~~~~~~~~~~------~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~ 478 (1096)
++.+++|+ .|+.+++|++.+....... .....+...+.+++|+|||+.+.+++++.|++|+
T Consensus 83 --~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 83 --KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp --TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred --CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 55666653 4778999998765432111 1123455679999999999954445666899999
Q ss_pred EEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE--eCCCCcEEEEEEcCCCCEEEE
Q 001343 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY--DAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 479 iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
||| .+++++..+. |...|.+++|+| +|.++++++.+ .+++|+..++...... ..|...|.+++|+|+++.+++
T Consensus 161 iwd~~~~~~~~~~~-~~~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 236 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-TRGEVKDLHFST--DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIA 236 (365)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECT--TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEE
T ss_pred EeECCCCcEEEEeC-CCCceEEEEEcc--CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEE
Confidence 999 8888888886 778899999977 77899888855 5666766666665433 346668999999999999999
Q ss_pred EeeccCCCCeEEEEeCCCCee----eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEe-ecCCCCC
Q 001343 556 CGTSKDGDSFLVEWNESEGTI----KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST-DAEGGLP 630 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~ 630 (1096)
++.+......+++|+...+.. ...+.+|.. .|.+++|+|+|++|++|+.|+.|+|||+.+++++..+ .+|..
T Consensus 237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~-- 313 (365)
T 4h5i_A 237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSF-- 313 (365)
T ss_dssp EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSS--
T ss_pred EecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccC--
Confidence 987443344788999876653 345667766 8999999999999999999999999999999998875 55654
Q ss_pred CccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.|++++|+|||++||+++.|++|+||++..+
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 8999999999999999999999999999765
No 76
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.4e-32 Score=293.63 Aligned_cols=250 Identities=19% Similarity=0.285 Sum_probs=212.2
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC--CCcEEEEEEeCCCcEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d--~~~~~l~s~s~d~~i~i 479 (1096)
+.+|...|.+++|+|+|++||+|+.|++|+|||+.++.. +...++.+|.+.|++++|+++ ++ +|++|+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 778999999999999999999999999999999975421 222368899999999999864 77 8999999999999
Q ss_pred EE-cCCc--eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe--eeEEeCCCCcEEEEEEcCC-----
Q 001343 480 WE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSAD----- 549 (1096)
Q Consensus 480 wd-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~----- 549 (1096)
|| .+++ .+..+.+|...|.+++|+|..++.+|++++.||+|++||++.... ...+..|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 99 6653 567788999999999999865578999999999999999987642 4567788889999999997
Q ss_pred --------CCEEEEEeeccCCCCeEEEEeCCCCe----eeEEEcCcCccceEEEEEeCCC---CEEEEEEcCCeEEEEeC
Q 001343 550 --------GSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQ---NHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 550 --------~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~ 614 (1096)
+++|++++. |+.|++||+++++ ....+.+|.. .|.+++|+|++ .+|++++.|++|++||+
T Consensus 162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 578999987 9999999998765 6678888887 89999999984 78999999999999999
Q ss_pred CCCe---EEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 615 DNVN---ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 615 ~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
.+.. ....+....+...|.+++|+|++++|++++.|+.|++|+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 8743 22233223344589999999999999999999999999975
No 77
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.7e-32 Score=304.66 Aligned_cols=244 Identities=15% Similarity=0.133 Sum_probs=215.8
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCC--ccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
+..|...|.+++|+|++++|++|+.|+.|++||+.+++ .+. .+.+|...|++++|+|+++ +|++++.|+.|++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~v 78 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH---ELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYV 78 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEE---EEECCSSCEEEEEEETTTT--EEEEEETTSCEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeee---eecCCCCcccEEEEeCCCC--EEEEEcCCCeEEE
Confidence 45589999999999999999999999999999999875 343 5779999999999999999 8999999999999
Q ss_pred EE-cCCceEE--EeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe----eeEEeCCCCcEEEEEEcCCCCE
Q 001343 480 WE-LSGRKLF--NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSADGSR 552 (1096)
Q Consensus 480 wd-~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~~~~ 552 (1096)
|| .+++... .+..|...|.+++|++ ++.+|++++.||.|++||++.... ......|...|.+++|+|++++
T Consensus 79 wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (372)
T 1k8k_C 79 WTLKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 156 (372)
T ss_dssp EEEETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred EECCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence 99 6766443 3467999999999977 668999999999999999998774 2233556779999999999999
Q ss_pred EEEEeeccCCCCeEEEEeC------------------CCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 001343 553 LFSCGTSKDGDSFLVEWNE------------------SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1096)
+++++. ++.|++||+ ..++.+..+.+|.. .+.+++|+|++++|++++.||.|++||+
T Consensus 157 l~~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 157 LAAGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp EEEEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred EEEEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 999987 999999995 46788888888877 8999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 615 DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
.+++.+..+..+.. .|.+++|+|++.+++++ .|+.|++|++.+
T Consensus 232 ~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 232 DKKMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp GGTTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CCCceeEEEccCCC--CeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 99999999987755 89999999999988887 999999999977
No 78
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.4e-32 Score=305.93 Aligned_cols=299 Identities=12% Similarity=0.138 Sum_probs=240.9
Q ss_pred eecccccCEEEEEEecCC-CcEEEEEEeCCCcEEEEE-cCCceEEEee--CCCCCeEEEEeeecCCCcEEEEEECCCeEE
Q 001343 446 QIDAHVGAVNDLAFAYPN-KLLCVVTCGDDKLIKVWE-LSGRKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIK 521 (1096)
Q Consensus 446 ~l~~h~~~v~~l~~s~d~-~~~~l~s~s~d~~i~iwd-~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 521 (1096)
.+.+|.+.|++++|+|++ + +|++|+.|+.|++|| .+++....+. +|...|.+++|+|. ++.+|++++.||.|+
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPT--TVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF-NTNQLFVSSIRGATT 144 (383)
T ss_dssp EECCCSSCEEEEEECSSCTT--EEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT-EEEEEEEEETTTEEE
T ss_pred eccCCCCCEEEEEECCCCCC--EEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC-CCCEEEEEeCCCEEE
Confidence 577899999999999999 6 899999999999999 7777776665 69999999999773 357999999999999
Q ss_pred EEEcCCCCeeeEEeCCC---CcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCC
Q 001343 522 AWLYDTMGSRVDYDAPG---HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1096)
Q Consensus 522 iwd~~~~~~~~~~~~~~---~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 598 (1096)
+||++. .....+..+. ..|.+++|+|+++++++++. ++.|++||+ +++.+..+.+|.. .+.+++|+|+++
T Consensus 145 iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~-~~~~~~~~~~h~~-~v~~~~~~~~~~ 217 (383)
T 3ei3_B 145 LRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS----TGRLLLLGL-DGHEIFKEKLHKA-KVTHAEFNPRCD 217 (383)
T ss_dssp EEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEET----TSEEEEEET-TSCEEEEEECSSS-CEEEEEECSSCT
T ss_pred EEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECC----CCCEEEEEC-CCCEEEEeccCCC-cEEEEEECCCCC
Confidence 999985 4444444433 67999999999999999987 999999999 5788888998887 899999999998
Q ss_pred -EEEEEEcCCeEEEEeCCC----CeEEEEeecCCCCCCccEEEEeC-CCCEEEEEECCCcEEEEEcCCCccccccccCCC
Q 001343 599 -HFLAVGEDSQIKFWDMDN----VNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPP 672 (1096)
Q Consensus 599 -~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 672 (1096)
++++++.|+.|++||+.+ +..+..+. + ...|.+++|+| ++.+|++++.|+.|++||+.++ .....+..+.
T Consensus 218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~--~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~ 293 (383)
T 3ei3_B 218 WLMATSSVDATVKLWDLRNIKDKNSYIAEMP-H--EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW-SKPDQIIIHP 293 (383)
T ss_dssp TEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-C--SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT-TSCSEEEECC
T ss_pred CEEEEEeCCCEEEEEeCCCCCcccceEEEec-C--CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC-cccccccccc
Confidence 999999999999999987 66666663 3 34899999999 9999999999999999999776 2222211110
Q ss_pred cccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCce
Q 001343 673 FEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQC 752 (1096)
Q Consensus 673 ~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~ 752 (1096)
..
T Consensus 294 ~~------------------------------------------------------------------------------ 295 (383)
T 3ei3_B 294 HR------------------------------------------------------------------------------ 295 (383)
T ss_dssp BC------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred EEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCC
Q 001343 753 RLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEE 832 (1096)
Q Consensus 753 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~ 832 (1096)
..+ |...+. +.|+|+ .
T Consensus 296 ----~~~---~~~~~~-~~~~p~--------------------------------------------------------~ 311 (383)
T 3ei3_B 296 ----QFQ---HLTPIK-ATWHPM--------------------------------------------------------Y 311 (383)
T ss_dssp ----CCT---TSCCCC-CEECSS--------------------------------------------------------S
T ss_pred ----ccc---cccceE-EeccCC--------------------------------------------------------C
Confidence 000 222221 133332 3
Q ss_pred CeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecC--CCCCeeEEEEecCCCcEEEEeeCCCeEEEEeecc
Q 001343 833 AVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (1096)
Q Consensus 833 ~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~--h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~ 904 (1096)
.+..++|+|||++ +++ ||.|+|||+.+++++..+.+ |...+..++|+| ++++|++|+ ||.|++||+++
T Consensus 312 ~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 312 DLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp SEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred CceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence 3456788899988 666 79999999999999999986 457788889999 899999997 99999999874
No 79
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.4e-32 Score=307.37 Aligned_cols=249 Identities=9% Similarity=0.078 Sum_probs=217.7
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCc---cccceeecccccCEEEEEEecC----C---CcEEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND---LRQHSQIDAHVGAVNDLAFAYP----N---KLLCVVT 470 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~l~~h~~~v~~l~~s~d----~---~~~~l~s 470 (1096)
.+.+|.+.|++++|+| ++|++|+.||.|++||+.+++. ......+.+|...|++++|+|+ + + +|++
T Consensus 11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~--~l~s 86 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC--LVAT 86 (397)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE--EEEE
T ss_pred hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc--EEEE
Confidence 4789999999999999 8999999999999999998761 1122357799999999999999 8 8 8999
Q ss_pred EeCCCcEEEEE-cCCce-----EEEeeCC-----CCCeEEEEeeec--CCCcE-EEEEECCCeEEEEEcCC------CCe
Q 001343 471 CGDDKLIKVWE-LSGRK-----LFNFEGH-----EAPVYSICPHHK--ENIQF-IFSTAIDGKIKAWLYDT------MGS 530 (1096)
Q Consensus 471 ~s~d~~i~iwd-~~~~~-----~~~~~~~-----~~~v~~~~~~~~--~~~~~-l~s~~~dg~i~iwd~~~------~~~ 530 (1096)
++.|+.|++|| .+++. +..+.+| ...|.+++|++. +++.+ |++++.||.|++||+++ ...
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 166 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence 99999999999 77776 8888888 589999999821 36678 99999999999999998 555
Q ss_pred ee-----EE-------eCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcC---c---CccceEEEE
Q 001343 531 RV-----DY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG---F---RKKSNGVVQ 592 (1096)
Q Consensus 531 ~~-----~~-------~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~---~---~~~~i~~~~ 592 (1096)
.. .+ ..+...|.+++|+|++ .+++++. ++.|++||+++++.+..+.. | .. .+.+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~h~~~~~-~i~~i~ 240 (397)
T 1sq9_A 167 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSN-SIRSVK 240 (397)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCC-CEEEEE
T ss_pred eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC----CCcEEEEECCCCceeEEEeccccccccCC-ccceEE
Confidence 55 55 4477789999999999 8888886 99999999999999999998 7 65 899999
Q ss_pred EeCCCCEEEEEEcC---CeEEEEeCCCCeEEEEeec-------------CCCCCCccEEEEeCCCCEEEEEECCCcEEEE
Q 001343 593 FDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDA-------------EGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1096)
Q Consensus 593 ~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 656 (1096)
|+|++.+|++++.| |.|++||+.+++.+..+.. +.. .|.+++|+|++++|++++.||.|++|
T Consensus 241 ~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iw 318 (397)
T 1sq9_A 241 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS--WVMSLSFNDSGETLCSAGWDGKLRFW 318 (397)
T ss_dssp ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS--CEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred ECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC--cEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 99999999999999 9999999999999988876 544 89999999999999999999999999
Q ss_pred EcCCC
Q 001343 657 ANAIG 661 (1096)
Q Consensus 657 d~~~~ 661 (1096)
|+.++
T Consensus 319 d~~~~ 323 (397)
T 1sq9_A 319 DVKTK 323 (397)
T ss_dssp ETTTT
T ss_pred EcCCC
Confidence 99877
No 80
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1e-31 Score=307.84 Aligned_cols=299 Identities=16% Similarity=0.196 Sum_probs=241.7
Q ss_pred cCCCceEEEEEcC-CCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCC
Q 001343 342 HQGSTVISMDFHP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGN 419 (1096)
Q Consensus 342 ~h~~~V~~v~fsp-~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~ 419 (1096)
.|.+.|++++|+| +++ +||+|+.||.|+|||+.+++......... . .........+|...|.+++|+| ++.
T Consensus 41 ~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKA--V----CSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp CCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECE--E----EEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred ccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEeccc--c----ccccccccccCCCcEEEEEEccCCCc
Confidence 4999999999999 998 79999999999999999887654211000 0 0000111356999999999999 788
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEec---CCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~---d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~ 495 (1096)
+|++++.||.|++||+.+++.... + .+...+.++.|++ ++. ++++++.|+.|++|| .+++.+..+.+|..
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 187 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADV---F-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCSHILQGHRQ 187 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEE---E-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCCEEECCCCS
T ss_pred EEEEEeCCCeEEEeeCCCCcccee---c-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCcceeeeecCCCC
Confidence 999999999999999999876652 2 3788899999998 445 799999999999999 88999999999999
Q ss_pred CeEEEEeeecCCCc-EEEEEECCCeEEEEEcCCCCee-eEE---------------eCCCCcEEEEEEcCCCCEEEEEee
Q 001343 496 PVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSR-VDY---------------DAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~-~~~---------------~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
.|.+++|+|. +. ++++++.||.|++||++..... ..+ ..+...|.+++|+|+++++++++.
T Consensus 188 ~v~~~~~~~~--~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 265 (408)
T 4a11_B 188 EILAVSWSPR--YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT 265 (408)
T ss_dssp CEEEEEECSS--CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred cEEEEEECCC--CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence 9999999874 45 6899999999999999876532 222 456778999999999999999987
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCc----cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccE
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRK----KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1096)
++.|++||+.+++....+..+.. ...........+..+++++.++.|++||+.+++.+..+..+.. .|.+
T Consensus 266 ----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~--~v~~ 339 (408)
T 4a11_B 266 ----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK--TVDC 339 (408)
T ss_dssp ----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS--CEEE
T ss_pred ----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC--eEEE
Confidence 99999999999877655443211 1122222234456777788899999999999999999987765 8999
Q ss_pred EEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 635 LRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 635 ~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
++|+|++++|++++.||.|++|++.++
T Consensus 340 ~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 340 CVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred EEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 999999999999999999999999877
No 81
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=8.3e-32 Score=330.33 Aligned_cols=248 Identities=20% Similarity=0.272 Sum_probs=215.9
Q ss_pred ccccCCCCEEEEEEcCC-CCEEEEEECCCeEEEEEccCCCcc--ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcE
Q 001343 401 IFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd-~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i 477 (1096)
.+.+|.+.|++++|+|+ +++|++|+.|++|++||+.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence 47899999999999986 479999999999999999865432 12235789999999999999999 89999999999
Q ss_pred EEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE---eCCCCcEEEEEEcCCC--C
Q 001343 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPGHWCTTMLYSADG--S 551 (1096)
Q Consensus 478 ~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~s~~~--~ 551 (1096)
++|| .+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||.......... ..|...|.+++|+|++ .
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 9999 88999999999999999999977 6689999999999999997644332222 3466789999999987 5
Q ss_pred EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCC
Q 001343 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1096)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1096)
.+++++. ++.|++||+++++....+.+|.. .+.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 533 ~l~s~s~----d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~---~~ 604 (694)
T 3dm0_A 533 TIVSASW----DKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN---SV 604 (694)
T ss_dssp EEEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS---SC
T ss_pred eEEEEeC----CCeEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC---Cc
Confidence 7888886 99999999999999999999987 8999999999999999999999999999999988777643 37
Q ss_pred ccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 632 LPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
|.+++|+|++.++++++. +.|++||+.++
T Consensus 605 v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~ 633 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAATE-HGIKIWDLESK 633 (694)
T ss_dssp EEEEEECSSSSEEEEEET-TEEEEEETTTT
T ss_pred EEEEEEcCCCcEEEEEcC-CCEEEEECCCC
Confidence 999999999998887764 56999999877
No 82
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.1e-31 Score=290.01 Aligned_cols=281 Identities=15% Similarity=0.257 Sum_probs=236.8
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC
Q 001343 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (1096)
Q Consensus 347 V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~ 426 (1096)
.++|+||+++ +||+| .|++|+|||+.+++.+... .+.+|...|.+++|+|++++||+|+.
T Consensus 28 ~~~l~WS~~~--~lAvg-~D~tV~iWd~~tg~~~~~~-----------------~~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVA-LDNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEE-ETTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEE-eCCEEEEEECCCCCEEEEE-----------------EecCCCCeEEEEEECCCCCEEEEEEC
Confidence 5789999986 68887 5999999999999876531 15678899999999999999999999
Q ss_pred CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceEEEeeCCCCCeEEEEeee
Q 001343 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHH 504 (1096)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~~~~~v~~~~~~~ 504 (1096)
||+|++||+++++.+. .+.+|...+.++.+. +. .+++++.++.+++|+ .....+..+.+|...+..+.+.+
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~~--~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeecC--CC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999999988776 577899998877665 55 899999999999999 44566788899999999999966
Q ss_pred cCCCcEEEEEECCCeEEEEEcCCCCe----eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEE
Q 001343 505 KENIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1096)
Q Consensus 505 ~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1096)
++.++++++.||+|++||+++++. ......+...|.++++++++..++.... ...++.|++||..........
T Consensus 161 --~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 161 --DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp --TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred --CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence 668999999999999999987654 2355567778999999998776553321 123789999999988877766
Q ss_pred cCcCccceEEEEEeCCCCEEEEEE--cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 581 AGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 581 ~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
.... .+..+.|++++..+++++ .|+.|++||+.+++.+..+.+|.. .|++++|+|++++|++|+.||+|++||+
T Consensus 238 ~~~~--~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~--~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 238 DAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp ECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ccee--eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 5443 578899999999888765 799999999999999999988765 8999999999999999999999999998
Q ss_pred CCC
Q 001343 659 AIG 661 (1096)
Q Consensus 659 ~~~ 661 (1096)
.+.
T Consensus 314 ~~~ 316 (318)
T 4ggc_A 314 FEL 316 (318)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 83
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.2e-32 Score=316.33 Aligned_cols=299 Identities=14% Similarity=0.221 Sum_probs=234.3
Q ss_pred eecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC------------C
Q 001343 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP------------I 407 (1096)
Q Consensus 340 ~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~ 407 (1096)
.+.|.+.|+|++|+|+|+ +||+|+.||.|+|||+.+++........ .......+.+|. .
T Consensus 24 ~~~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~--------~~~~~~~~~~h~~~~~~~~~~~~~~ 94 (447)
T 3dw8_B 24 DVAEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRG--------EYNVYSTFQSHEPEFDYLKSLEIEE 94 (447)
T ss_dssp CCCGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCC--------CEEEEEEEECCCCEEEGGGTEEECC
T ss_pred cccccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCccccc--------ceeEecccccccccccccccccccC
Confidence 355788999999999999 7999999999999999887631100000 000112367887 8
Q ss_pred CEEEEEEcCCC--CEEEEEECCCeEEEEEccCCCcccc------------------------------------c-eeec
Q 001343 408 SVSRVAWSPDG--NYVGVAFTKHLIQLYSYAGSNDLRQ------------------------------------H-SQID 448 (1096)
Q Consensus 408 ~V~~l~~spd~--~~l~s~~~dg~i~vwd~~~~~~~~~------------------------------------~-~~l~ 448 (1096)
.|.+++|+|++ .+|++++.|+.|++||+.+++.... . ....
T Consensus 95 ~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
T 3dw8_B 95 KINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN 174 (447)
T ss_dssp CCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred ceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence 89999999998 8999999999999999986433100 0 1136
Q ss_pred ccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c-CCceEE-------EeeCCCCCeEEEEeeecCCC-cEEEEEECCC
Q 001343 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLF-------NFEGHEAPVYSICPHHKENI-QFIFSTAIDG 518 (1096)
Q Consensus 449 ~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~-~~~~~~-------~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg 518 (1096)
+|...|++++|+|+++ +|++| .|+.|++|| . .++.+. .+.+|...|.+++|+| ++ .+|++|+.||
T Consensus 175 ~h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg 249 (447)
T 3dw8_B 175 AHTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKG 249 (447)
T ss_dssp CCSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTS
T ss_pred CCCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCC
Confidence 8999999999999999 89998 799999999 4 344444 3568999999999987 44 7999999999
Q ss_pred eEEEEEcCCCCe----eeEEeCCCC------------cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC-CeeeEEEc
Q 001343 519 KIKAWLYDTMGS----RVDYDAPGH------------WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYA 581 (1096)
Q Consensus 519 ~i~iwd~~~~~~----~~~~~~~~~------------~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~ 581 (1096)
.|++||+++... ...+..+.. .|.+++|+|+|++|++++ ++.|++||+++ ++.+..+.
T Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~ 324 (447)
T 3dw8_B 250 TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQ 324 (447)
T ss_dssp CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEE
T ss_pred eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceee
Confidence 999999998876 667777765 899999999999999886 58999999997 88888888
Q ss_pred CcCccc--------------eEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC---------------------
Q 001343 582 GFRKKS--------------NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE--------------------- 626 (1096)
Q Consensus 582 ~~~~~~--------------i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------------- 626 (1096)
+|.... +..++|+|++.+|++|+.||.|++||+.+++.+......
T Consensus 325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (447)
T 3dw8_B 325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRK 404 (447)
T ss_dssp SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCC
T ss_pred ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcc
Confidence 875311 223899999999999999999999999998876422111
Q ss_pred ---------CCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 627 ---------GGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 627 ---------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
.....|..++|+|++++||+++.++ +.+|..
T Consensus 405 ~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 405 KDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 1223688999999999999998875 777764
No 84
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.4e-31 Score=290.96 Aligned_cols=248 Identities=15% Similarity=0.198 Sum_probs=207.3
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCC--CeeecccceeecccccCccccccccccCCCCEEEEEEcCC-
Q 001343 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR--DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD- 417 (1096)
Q Consensus 341 l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 417 (1096)
.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++ +.+. .+.+|.+.|.+++|+|+
T Consensus 6 ~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~~ 65 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPK 65 (297)
T ss_dssp CSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCGG
T ss_pred cCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCCC
Confidence 35999999999999999 6999999999999999754 2222 37899999999999874
Q ss_pred -CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC--CCcEEEEEEeCCCcEEEEE-cCCc--eEEEee
Q 001343 418 -GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGR--KLFNFE 491 (1096)
Q Consensus 418 -~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d--~~~~~l~s~s~d~~i~iwd-~~~~--~~~~~~ 491 (1096)
+++||+|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++|| ..+. ....+.
T Consensus 66 ~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 142 (297)
T 2pm7_B 66 FGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIID 142 (297)
T ss_dssp GCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEE
T ss_pred cCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeee
Confidence 899999999999999999887422 22257789999999999998 77 899999999999999 5543 246778
Q ss_pred CCCCCeEEEEeeecC-----------CCcEEEEEECCCeEEEEEcCCCC----eeeEEeCCCCcEEEEEEcCCC---CEE
Q 001343 492 GHEAPVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMG----SRVDYDAPGHWCTTMLYSADG---SRL 553 (1096)
Q Consensus 492 ~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~~---~~l 553 (1096)
+|...|.+++|+|.. ++.+|++|+.||+|++||+++.. ....+..|...|.+++|+|++ .+|
T Consensus 143 ~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~l 222 (297)
T 2pm7_B 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYM 222 (297)
T ss_dssp CCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred cccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEE
Confidence 999999999998752 25699999999999999998766 445677899999999999995 789
Q ss_pred EEEeeccCCCCeEEEEeCCCCe--e-eEEE--cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 554 FSCGTSKDGDSFLVEWNESEGT--I-KRTY--AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~--~-~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
++++. |+.|++||+.++. . ...+ ..+.. .+.+++|+|++++|++++.|+.|++|+...
T Consensus 223 as~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 223 ASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEEC----CCcEEEEEeCCCCCccceeeeecccCCC-cEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 99887 9999999987643 1 2233 34444 789999999999999999999999999863
No 85
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-33 Score=313.16 Aligned_cols=222 Identities=9% Similarity=0.023 Sum_probs=181.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCC
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~ 484 (1096)
-..+|.+++|||||+++|+++.|++|+ |...++ .+.+|...|++++|+|+| .++.+.+|+.++
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------~l~gh~~~v~~V~FsPdg---------~~~~~~~~~~~~ 76 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------DINCNSKNLFHVKEFPLE---------FENKLDFELAQQ 76 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------CCSSBGGGTEEEEEECCC---------CCCTTTTSCCCS
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc------eecCCCccEEEEEECCCC---------CcceEEEEeCCC
Confidence 457899999999999999999999999 755443 346899999999999998 377777777444
Q ss_pred ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCC-----cEEEEEEcCCCCEEEEEeec
Q 001343 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-----WCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~i~~l~~s~~~~~l~~~~~~ 559 (1096)
..+..+ .|...|.+++|+| +|.+|++++.||.|++||.+. ....+. |.. .+.+++|||||++|++++.
T Consensus 77 ~~~~~~-~~~~~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~- 149 (588)
T 2j04_A 77 NGLLNS-QPVCYPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE- 149 (588)
T ss_dssp SCSSTT-SCSCCEEEEEECS--SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET-
T ss_pred ceEeec-CCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC-
Confidence 444444 4588999999977 778999999999999999544 444444 443 5999999999999999997
Q ss_pred cCCCCeEEEEeCCCCe-------eeEEE----cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeE---EEEee-
Q 001343 560 KDGDSFLVEWNESEGT-------IKRTY----AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI---LTSTD- 624 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~-------~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~- 624 (1096)
|+.|++||+.++. .+.++ .+|.. .|.+++|+|+| +++++.|+.|++|++.++.. ..++.
T Consensus 150 ---DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~-~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~ 223 (588)
T 2j04_A 150 ---DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD-WVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN 223 (588)
T ss_dssp ---TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC-CEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC
T ss_pred ---CCEEEEEECCCCccccccceeeeeeecccccccc-cEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc
Confidence 9999999999885 35776 55554 89999999998 88999999999999988773 34553
Q ss_pred cCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 625 AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 625 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.+. ..|.+++|+ |+.||+++ ++.|++||+.++
T Consensus 224 ~h~--~~V~svaFs--g~~LASa~-~~tIkLWd~~~~ 255 (588)
T 2j04_A 224 ASR--RKITDLKIV--DYKVVLTC-PGYVHKIDLKNY 255 (588)
T ss_dssp CCS--SCCCCEEEE--TTEEEEEC-SSEEEEEETTTT
T ss_pred ccc--CcEEEEEEE--CCEEEEEe-CCeEEEEECCCC
Confidence 443 489999999 68999887 699999999776
No 86
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3e-31 Score=306.05 Aligned_cols=272 Identities=19% Similarity=0.299 Sum_probs=239.1
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
+|...|+|++| +++ ++++|+.||.|++||+.+++.+.. +.+|.+.|.+++| ++++|
T Consensus 131 ~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCCEE
Confidence 37788999988 677 799999999999999999887653 7789999999999 78999
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceE---EEeeCCCCCe
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL---FNFEGHEAPV 497 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~---~~~~~~~~~v 497 (1096)
++|+.||.|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.||.|++|| .++..+ ..+.+|...|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 999999999999999988766 5778999999999974 4 799999999999999 666655 6788999999
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
.++++ ++.++++|+.||.|++||+++++....+..|...|.++.+ +++++++++. ++.|++||+++++.+
T Consensus 260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~~~ 329 (435)
T 1p22_A 260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACL 329 (435)
T ss_dssp EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCCEE
T ss_pred EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCCEE
Confidence 99998 4579999999999999999999999999999999999998 4679999987 999999999999999
Q ss_pred EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe---------EEEEeecCCCCCCccEEEEeCCCCEEEEEE
Q 001343 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN---------ILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1096)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1096)
..+.+|.. .+.+++| ++.++++|+.||.|++||+.++. .+..+..|.. .|.+++| ++.+|++++
T Consensus 330 ~~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~l~s~s 402 (435)
T 1p22_A 330 RVLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF--DEFQIVSSS 402 (435)
T ss_dssp EEECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE--CSSCEEECC
T ss_pred EEEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC--CeEEEEe--CCCEEEEEe
Confidence 99999887 7888888 78899999999999999997665 6777776655 8999999 778999999
Q ss_pred CCCcEEEEEcCCC
Q 001343 649 ADNGFKILANAIG 661 (1096)
Q Consensus 649 ~dg~i~iwd~~~~ 661 (1096)
.||.|++||+.++
T Consensus 403 ~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 403 HDDTILIWDFLND 415 (435)
T ss_dssp SSSEEEEEC----
T ss_pred CCCEEEEEECCCC
Confidence 9999999999776
No 87
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.3e-31 Score=299.91 Aligned_cols=249 Identities=15% Similarity=0.236 Sum_probs=212.1
Q ss_pred ccccCCCCEEEEEEcCC----CCEEEEEECCCeEEEEEccCCCccccceeec--ccccCEEEEEEecC----CCcEEEEE
Q 001343 401 IFKDVPISVSRVAWSPD----GNYVGVAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYP----NKLLCVVT 470 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~--~h~~~v~~l~~s~d----~~~~~l~s 470 (1096)
+..+|.+.|.+++|+|+ ...+++++.++.|++||+.+++.+..+.... .|...|++++|+|+ +. +|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 45689999999999984 4566666677799999999887765433222 36788999999999 55 8999
Q ss_pred EeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE---eCCCCcEEEEEE
Q 001343 471 CGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPGHWCTTMLY 546 (1096)
Q Consensus 471 ~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~ 546 (1096)
|+.||.|++|| .+++.+..+.+|..+|.+++|+|. ++.+|++++.||.|++||+++++....+ ..+...|.+++|
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 99999999999 889999999999999999999773 4579999999999999999998888877 678889999999
Q ss_pred cCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcC----------------------------cCccceEEEEEeCCCC
Q 001343 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG----------------------------FRKKSNGVVQFDTTQN 598 (1096)
Q Consensus 547 s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~----------------------------~~~~~i~~~~~~~~~~ 598 (1096)
+|+++++++++. ++.|++||+++++....+.. |.. .+.+++|+ ++
T Consensus 170 ~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~--~~ 242 (366)
T 3k26_A 170 DLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN-YVDCVRWL--GD 242 (366)
T ss_dssp CTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS-CCCEEEEE--TT
T ss_pred CCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc-eEEEEEEc--CC
Confidence 999999999987 99999999998765544332 555 78889998 77
Q ss_pred EEEEEEcCCeEEEEeCCCCeE--------------EEEeecCCCCCCccEEEEeCC--CCEEEEEECCCcEEEEEcCCC
Q 001343 599 HFLAVGEDSQIKFWDMDNVNI--------------LTSTDAEGGLPNLPRLRFSKE--GNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 599 ~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
++++++.||.|++||+.++.. +..+..+.. .|.+++|+|+ +++|++++.||.|++||+.++
T Consensus 243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC--DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC--CSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCC--cEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 999999999999999987643 666666654 8999999999 999999999999999998765
No 88
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.1e-31 Score=297.75 Aligned_cols=310 Identities=13% Similarity=0.172 Sum_probs=242.6
Q ss_pred cccccCCCCEEEEEEcCCCCEEE-EEEC---CCeEEEEEccCCCccccceeecccccCEEEEEEecC---CCcEEEEEEe
Q 001343 400 SIFKDVPISVSRVAWSPDGNYVG-VAFT---KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCG 472 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~spd~~~l~-s~~~---dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d---~~~~~l~s~s 472 (1096)
.++.+|...|.+++|+|++..++ +|+. ||.|++||+.+++.... ...+|...|.+++|+|+ +. +|++|+
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~ 87 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGD 87 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEE
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEec
Confidence 34678999999999999997555 5555 89999999998775432 23379999999999999 57 899999
Q ss_pred CCCcEEEEE-cCCc-eEEEeeCCCCCeEEEEeee----cCCCcEEEEEECCCeEEEEEcCCCC-eeeEEeCCCC----cE
Q 001343 473 DDKLIKVWE-LSGR-KLFNFEGHEAPVYSICPHH----KENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGH----WC 541 (1096)
Q Consensus 473 ~d~~i~iwd-~~~~-~~~~~~~~~~~v~~~~~~~----~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~----~i 541 (1096)
.||.|++|| .+++ .+..+.+|...|.++.|.+ .+++.+|++++.||.|++||+++.. ....+..+.. .+
T Consensus 88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 999999999 7777 8899999999999997753 4577899999999999999999887 5666655443 78
Q ss_pred EEEE----EcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC---CCCEEEEEEcCCeEEEEeC
Q 001343 542 TTML----YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT---TQNHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 542 ~~l~----~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~ 614 (1096)
.+++ |+++++++++++. ++.|++||+++++.... ..+.. .+.+++|+| ++..+++++.||.|++||+
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWE-TNIKN-GVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEE-EECSS-CEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred EEEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeee-cCCCC-ceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 8888 7899999999986 89999999999987554 44444 799999999 8999999999999999999
Q ss_pred CCCeEEEEee-----cCCCCCCccEEEEeCCCC-EEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecC
Q 001343 615 DNVNILTSTD-----AEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1096)
Q Consensus 615 ~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 688 (1096)
.+++....+. .+. ..|.+++|+|++. ++++++.||.|++||+.++.... .. .++
T Consensus 242 ~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~-----------------~~~ 301 (357)
T 3i2n_A 242 RTQHPTKGFASVSEKAHK--STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRS-KK-----------------DSE 301 (357)
T ss_dssp EEEETTTEEEEEEEECCS--SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC---C-----------------CTT
T ss_pred cCCCcccceeeeccCCCc--CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccc-cc-----------------cCC
Confidence 8766544333 444 4899999999998 89999999999999997662111 00 001
Q ss_pred CCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEE
Q 001343 689 ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVV 768 (1096)
Q Consensus 689 g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~ 768 (1096)
|... .. .+.. .....+.+ |...|.
T Consensus 302 g~~~-------------------------------------~~---~~~~-------------~~~~~~~~---~~~~v~ 325 (357)
T 3i2n_A 302 GIEM-------------------------------------GV---AGSV-------------SLLQNVTL---STQPIS 325 (357)
T ss_dssp SCCC-------------------------------------CC---CCEE-------------EEEEEEEC---CSSCEE
T ss_pred CCcc-------------------------------------cc---cccc-------------ceeecccc---CCCCee
Confidence 1000 00 0110 11223445 889999
Q ss_pred EEEEecCCceEE-EeecCCeEEEeeccC
Q 001343 769 RLLYTNSAVGLL-ALGSNGVQKLWKWHR 795 (1096)
Q Consensus 769 ~l~~s~~~~~l~-~~~~dg~v~vw~~~~ 795 (1096)
+++|+|+++.++ +++.|+.|++|++..
T Consensus 326 ~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 326 SLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp EEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred EEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 999999999998 788899999999753
No 89
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-32 Score=311.59 Aligned_cols=243 Identities=14% Similarity=0.099 Sum_probs=202.7
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC--CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS--NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
+..|.+.|.+++|+|++++||+|+.|+.|++||+.++ +... .+.+|.+.|++++|+|+++ +|++++.|++|++
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~v 81 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYV 81 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEE
Confidence 3446789999999999999999999999999999987 4444 5789999999999999999 8999999999999
Q ss_pred EE-cCCc---eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe---eeEEeC-CCCcEEEEEEcCCCC
Q 001343 480 WE-LSGR---KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDA-PGHWCTTMLYSADGS 551 (1096)
Q Consensus 480 wd-~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~-~~~~i~~l~~s~~~~ 551 (1096)
|| .+++ ....+.+|...|.+++|+| ++.+|++++.||.|++||++..+. ...+.. |...|.+++|+|+++
T Consensus 82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 159 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV 159 (377)
T ss_dssp C------CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred EEcCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence 99 6665 6778889999999999977 668999999999999999998763 556666 888999999999999
Q ss_pred EEEEEeeccCCCCeEEEEeCC------------------CCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEe
Q 001343 552 RLFSCGTSKDGDSFLVEWNES------------------EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (1096)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 613 (1096)
++++++. ++.|++||+. .++.+..+ +|.. .+.+++|+|++++|++++.||.|++||
T Consensus 160 ~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~~~~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 160 LLAAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-WVHAVGFSPSGNALAYAGHDSSVTIAY 233 (377)
T ss_dssp EEEEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-SEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred EEEEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-eEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 9999987 8999999985 35566666 6665 899999999999999999999999999
Q ss_pred CCCCeE----EEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 614 MDNVNI----LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 614 ~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
+.+++. +..+..+.. .|.+++|+|++++|++++.++.+ +|+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 234 PSAPEQPPRALITVKLSQL--PLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp ECSTTSCEEECCCEECSSS--CEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred CCCCCCcceeeEeecCCCC--ceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 999877 666666654 89999999999999998776655 666543
No 90
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.4e-31 Score=299.63 Aligned_cols=303 Identities=10% Similarity=0.094 Sum_probs=225.5
Q ss_pred CccEEEEeCCCCEEEEEECCC-------cEEEEEcCCCccccc---------cccCCCcccccCcceeEEeecCCCeEEe
Q 001343 631 NLPRLRFSKEGNLLAVTTADN-------GFKILANAIGLRSLR---------AVENPPFEALRTPIESVALKVSASSAVS 694 (1096)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~---------~~~~~~~~~~~~~v~~~~~s~~g~~lv~ 694 (1096)
+|++++|+||+++|++|+.+. .|++|++..+..... .+..+. ..+. ++++++..+++
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~-----~~v~--s~~~~~~~~~~ 88 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDND-----DSPT--AIDASKGIILV 88 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTS-----CCCC--EEEEETTEEEE
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCC-----CceE--EEEeCCCEEEE
Confidence 799999999999999998643 499999876532111 112221 1233 44566667655
Q ss_pred cCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCce-EEEEcCCCCCCcccEEEEEEe
Q 001343 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQC-RLVTMPESTDTSSKVVRLLYT 773 (1096)
Q Consensus 695 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s 773 (1096)
+... .+..+++++.|+.+++|++......... ....+.....+...+++++||
T Consensus 89 g~~~--------------------------~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS 142 (365)
T 4h5i_A 89 GCNE--------------------------NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS 142 (365)
T ss_dssp ECCC--------------------------CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC
T ss_pred EECC--------------------------CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc
Confidence 5432 3446788899999999998742111111 111111112255679999999
Q ss_pred cCCceEEEee--cCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecC
Q 001343 774 NSAVGLLALG--SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG 851 (1096)
Q Consensus 774 ~~~~~l~~~~--~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~d 851 (1096)
|||+++++++ .|++|++|++. +++++. .+. |...|.+++|+|||++|+++++
T Consensus 143 pDg~~la~as~~~d~~i~iwd~~----------------------~~~~~~-~~~---~~~~V~~v~fspdg~~l~s~s~ 196 (365)
T 4h5i_A 143 REGTVAAIASSKVPAIMRIIDPS----------------------DLTEKF-EIE---TRGEVKDLHFSTDGKVVAYITG 196 (365)
T ss_dssp TTSSCEEEEESCSSCEEEEEETT----------------------TTEEEE-EEE---CSSCCCEEEECTTSSEEEEECS
T ss_pred CCCCEEEEEECCCCCEEEEeECC----------------------CCcEEE-EeC---CCCceEEEEEccCCceEEeccc
Confidence 9999876544 47899999863 233322 222 6778999999999999999998
Q ss_pred CeEEEEEcccceEEE--eecCCCCCeeEEEEecCCCcEEEEeeCCC----eEEEEeeccceeeeeeccccccccceeeec
Q 001343 852 GKISLFNMMTFKVMT--TFMSPPPASTFLAFHPQDNNIIAIGTEDS----TIHIYNVRVDELCVWSIDTWEKRKSVTIHI 925 (1096)
Q Consensus 852 g~v~iwd~~~~~~~~--~~~~h~~~i~~l~~s~~d~~~l~s~~~dg----~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~ 925 (1096)
+.+.+|+..+++.+. ....|...|.+++|+| +++++++++.|+ .+++|++..... .......
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~-----------~~~~~~~ 264 (365)
T 4h5i_A 197 SSLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNT-----------SVLRSKQ 264 (365)
T ss_dssp SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEE-----------EEEEEEE
T ss_pred eeEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeeccccccee-----------cceeeee
Confidence 888888888877654 3557888999999999 999999999887 688888876650 0112334
Q ss_pred CCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEec
Q 001343 926 PAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1004 (1096)
Q Consensus 926 ~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~ 1004 (1096)
+.+|.. .|++++|||||++||+ +.|++|+|||+.+++++..+..+| ...|++++|||||++||+|+.|++|+|||+
T Consensus 265 ~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~~~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 265 VTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--SFAITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp EESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--SSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred ecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--cCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 556665 8999999999999999 789999999999999998876555 999999999999999999999999999999
Q ss_pred CCC
Q 001343 1005 DTL 1007 (1096)
Q Consensus 1005 ~~~ 1007 (1096)
...
T Consensus 342 p~~ 344 (365)
T 4h5i_A 342 PLN 344 (365)
T ss_dssp CTT
T ss_pred CCC
Confidence 654
No 91
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=6.2e-31 Score=293.36 Aligned_cols=278 Identities=10% Similarity=0.116 Sum_probs=238.6
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC-E
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-Y 420 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~ 420 (1096)
.|.+.|++++|+|+++ +|++|+.||.|+|||+.+++.... ...+.+|...|.+++|+|+++ +
T Consensus 9 ~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCcccc----------------ceeeeecCCceEEEEECCCCCcE
Confidence 4999999999999999 699999999999999988762110 011457999999999999999 9
Q ss_pred EEEEECCCeEEEEEc-cCCCccccceeecc--cccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cC---------CceE
Q 001343 421 VGVAFTKHLIQLYSY-AGSNDLRQHSQIDA--HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS---------GRKL 487 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~-~~~~~~~~~~~l~~--h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~---------~~~~ 487 (1096)
|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| +. .|++++.|+.|++|| .+ ++++
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence 999999999999999 87654 25778 999999999999 77 899999999999999 66 6667
Q ss_pred EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC-CCe--eeEEeCCCCcEEEEEEcC-CCCEEEEEeeccCCC
Q 001343 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGS--RVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGD 563 (1096)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~l~~s~-~~~~l~~~~~~~~~~ 563 (1096)
..+. |...|.+++|++ ++ +++++.||.|++||++. ... ......+...+.+++|+| +++++++++. +
T Consensus 145 ~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----d 215 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----D 215 (342)
T ss_dssp SSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----T
T ss_pred eEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec----C
Confidence 6776 889999999975 33 99999999999999998 543 334456677899999999 9999999987 9
Q ss_pred CeEEEEeCCCC------eeeEEEcCcCc--------cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC-CC
Q 001343 564 SFLVEWNESEG------TIKRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-GG 628 (1096)
Q Consensus 564 ~~i~iwd~~~~------~~~~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~ 628 (1096)
+.+++|++... +....+..|.. ..+.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 216 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~ 295 (342)
T 1yfq_A 216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED 295 (342)
T ss_dssp SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS
T ss_pred CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC
Confidence 99999999887 77888887743 27899999999999999999999999999999999888776 54
Q ss_pred CCCccEEEEeCCCCEEEEEECCCc-EEEE
Q 001343 629 LPNLPRLRFSKEGNLLAVTTADNG-FKIL 656 (1096)
Q Consensus 629 ~~~v~~~~~s~~~~~l~~~~~dg~-i~iw 656 (1096)
.|.+++ |++.+|++++.||. .+.|
T Consensus 296 --~v~~~~--~~~~~l~s~s~Dg~~~~~~ 320 (342)
T 1yfq_A 296 --SVVKIA--CSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp --EEEEEE--ECSSEEEEEEECTHHHHCS
T ss_pred --CceEec--CCCCeEEEEecCCcccccc
Confidence 889998 99999999999997 4443
No 92
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-30 Score=285.01 Aligned_cols=239 Identities=15% Similarity=0.226 Sum_probs=212.1
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
.+.+|.+.|.+++| |++++|++|+.||.|++||+.+++... .+..|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGV 86 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEE
Confidence 48899999999999 999999999999999999998876555 5678999999999999999 89999999999999
Q ss_pred E-cC---CceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcC-CCCEEEE
Q 001343 481 E-LS---GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGSRLFS 555 (1096)
Q Consensus 481 d-~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~~ 555 (1096)
+ .. ++.+..+.+|...|.+++| ++.++++++.||.|++|| .......+..+...+.+++++| +++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 9 43 3567888999999999998 346999999999999999 6667778888999999999988 8999999
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEE
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 635 (1096)
++. ++.|++|| .++....+.......+.+++|+|++. +++++.||.|++||+.+++.+..+..+.. .|.++
T Consensus 161 ~~~----d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~ 231 (313)
T 3odt_A 161 ASA----DKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES--FVYCI 231 (313)
T ss_dssp EET----TSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEE
T ss_pred EEC----CCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc--eEEEE
Confidence 987 99999999 56777788874444899999999987 99999999999999999999999987765 89999
Q ss_pred EEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 636 RFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 636 ~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+|+|++ .+++++.||.|++||+.++
T Consensus 232 ~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 232 KLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp EECTTS-CEEEEETTSEEEEECTTTC
T ss_pred EEecCC-CEEEEecCCEEEEEECCCC
Confidence 999999 5889999999999998665
No 93
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.2e-30 Score=298.97 Aligned_cols=327 Identities=13% Similarity=0.142 Sum_probs=252.9
Q ss_pred CCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe-------------CCCC
Q 001343 474 DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------------APGH 539 (1096)
Q Consensus 474 d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~~~~ 539 (1096)
++.+++|+ ..++....+.+|.++|++++|+|. ++.+|++|+.||.|++||+.+......+. .|..
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPV-EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTT-TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecC-CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 45678888 777888889999999999999762 45799999999999999999876655443 4788
Q ss_pred cEEEEEEcC-CCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC---CCEEEEEEcCCeEEEEeCC
Q 001343 540 WCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFWDMD 615 (1096)
Q Consensus 540 ~i~~l~~s~-~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~ 615 (1096)
.|.+++|+| ++.++++++. ++.|++||+.+++....+... . .+..+.+.+. +.++++++.||.|++||+.
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSF----DKTLKVWDTNTLQTADVFNFE-E-TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp CEEEEEECTTCTTCEEEEET----TSEEEEEETTTTEEEEEEECS-S-CEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred cEEEEEEccCCCcEEEEEeC----CCeEEEeeCCCCccceeccCC-C-ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 999999999 7788999886 999999999999998888743 3 6788888884 4599999999999999999
Q ss_pred CCeEEEEeecCCCCCCccEEEEeCCCC-EEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEe
Q 001343 616 NVNILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (1096)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~ 694 (1096)
+++.+..+..+.. .|.+++|+|++. ++++++.||.|++||+.++......+..+.....
T Consensus 175 ~~~~~~~~~~~~~--~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------------------ 234 (408)
T 4a11_B 175 SGSCSHILQGHRQ--EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS------------------ 234 (408)
T ss_dssp SSCCCEEECCCCS--CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC------------------
T ss_pred CcceeeeecCCCC--cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc------------------
Confidence 9998888887655 899999999998 6999999999999999877433333322211000
Q ss_pred cCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEec
Q 001343 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774 (1096)
Q Consensus 695 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 774 (1096)
..+.. ...+ |...|.+++|+|
T Consensus 235 -----------------------------------------~~~~~---------------~~~~---~~~~v~~~~~~~ 255 (408)
T 4a11_B 235 -----------------------------------------QAVES---------------ANTA---HNGKVNGLCFTS 255 (408)
T ss_dssp -----------------------------------------CCTTT---------------SSCS---CSSCEEEEEECT
T ss_pred -----------------------------------------eeecc---------------cccc---ccCceeEEEEcC
Confidence 00000 1122 888999999999
Q ss_pred CCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeE
Q 001343 775 SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKI 854 (1096)
Q Consensus 775 ~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v 854 (1096)
++.++++++.||.+++|++........ ..+.... . ..............+.+++++.++.|
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~--------------~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~i 316 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLV--------------NYGKVCN---N--SKKGLKFTVSCGCSSEFVFVPYGSTI 316 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCC--------------CCCCCCC---C--CSSCCCCEECCSSSSCEEEEEETTEE
T ss_pred CCCEEEEecCCCeEEEEECCCCcccee--------------ccccccc---c--ccccceeEEecCCCceEEEEecCCEE
Confidence 999999999999999999865321000 0000000 0 01122223333445566666668999
Q ss_pred EEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccce
Q 001343 855 SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1096)
Q Consensus 855 ~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~ 906 (1096)
++||+.+++.+..+.+|...|++++|+| ++++|++++.||.|++|++.+++
T Consensus 317 ~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 317 AVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC--
T ss_pred EEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCC
Confidence 9999999999999999999999999999 89999999999999999999877
No 94
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7e-32 Score=311.05 Aligned_cols=208 Identities=13% Similarity=0.135 Sum_probs=171.3
Q ss_pred eecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc--eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEE
Q 001343 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKA 522 (1096)
Q Consensus 446 ~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 522 (1096)
...+|...|++++|+|.+.. +||+|+.||+|+||| ..++ ....+.+|.+.|++++|+|. ++.+|++|+.||+|++
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~-~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~-~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPS-TVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL-NTNQFYASSMEGTTRL 191 (435)
T ss_dssp EEEECSSCEEEEEECSSCTT-CEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS-CTTEEEEECSSSCEEE
T ss_pred cCCCCCCCEEEEEEeCCCCC-EEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC-CCCEEEEEeCCCEEEE
Confidence 45678999999999995443 799999999999999 5554 34556789999999999874 4579999999999999
Q ss_pred EEcCCCCeeeEEeCC--CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCC-E
Q 001343 523 WLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-H 599 (1096)
Q Consensus 523 wd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 599 (1096)
||+++.........+ ...+.+++|+|++++|++++. ++.|++||++ ++.+..+.+|.. .|.+++|+|++. +
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~----dg~i~~wd~~-~~~~~~~~~h~~-~v~~v~~~p~~~~~ 265 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN----VGNVILLNMD-GKELWNLRMHKK-KVTHVALNPCCDWF 265 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECS----SSBEEEEESS-SCBCCCSBCCSS-CEEEEEECTTCSSE
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeC----CCcEeeeccC-cceeEEEecccc-eEEeeeecCCCceE
Confidence 999865544433333 336789999999999999987 9999999986 456677888877 899999999876 6
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEEe-ecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 600 FLAVGEDSQIKFWDMDNVNILTST-DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+++++.|+.|++||+++.+....+ ....+...|++++|+|+|.+|++++.||.|++||+.++
T Consensus 266 ~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred EEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence 788999999999999886654333 22234458999999999999999999999999999887
No 95
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=1.7e-30 Score=293.02 Aligned_cols=289 Identities=17% Similarity=0.239 Sum_probs=240.3
Q ss_pred CcceEEeec-CCCceEEEEEcCC---CCcEEEEEeCCCeEEEEecCC-CCeeecccceeecccccCccccccccccCCCC
Q 001343 334 PRTVAVSLH-QGSTVISMDFHPS---HQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408 (1096)
Q Consensus 334 ~~~~~~~l~-h~~~V~~v~fsp~---g~~llasg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 408 (1096)
+...+..+. |.+.|+|++|+|+ |+ +|++|+.||.|+|||+.+ +..+. ..+.+|...
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~------------------~~~~~h~~~ 88 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIP------------------KAQQMHTGP 88 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEE------------------EEEEECSSC
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeE------------------EEeccccCC
Confidence 445566665 9999999999999 57 799999999999999987 44431 126779999
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEE--ecCCCcEEEEEEeCCCcEEEEE-cCCc
Q 001343 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF--AYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1096)
Q Consensus 409 V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~--s~d~~~~~l~s~s~d~~i~iwd-~~~~ 485 (1096)
|.+++|+|++++|++|+.||.|++||+.+++... +.+|...|++++| ++++. +|++++.|+.|++|| .+++
T Consensus 89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSS
T ss_pred EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCc
Confidence 9999999999999999999999999999887554 5679999999999 88888 899999999999999 8889
Q ss_pred eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe--CCCCcEEEEEEcCCCCE----EEEEeec
Q 001343 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADGSR----LFSCGTS 559 (1096)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~----l~~~~~~ 559 (1096)
.+..+..+. .+.++.+.+ ..+++++.++.+++|+++......... .....+.++.+.++... +++++.
T Consensus 163 ~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 236 (368)
T 3mmy_A 163 PMMVLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI- 236 (368)
T ss_dssp CSEEEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET-
T ss_pred EEEEEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC-
Confidence 888888765 566666542 478999999999999998776554332 23345666666665544 888876
Q ss_pred cCCCCeEEEEeCCCC---eeeEEEcCcCcc-----------ceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeec
Q 001343 560 KDGDSFLVEWNESEG---TIKRTYAGFRKK-----------SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~---~~~~~~~~~~~~-----------~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1096)
++.|++||+... ..+..+.+|... .+.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus 237 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (368)
T 3mmy_A 237 ---EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ 313 (368)
T ss_dssp ---TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred ---CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence 999999999987 567778777653 589999999999999999999999999999999998887
Q ss_pred CCCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 626 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
+.. .|.+++|+|++.+|++++.|+..+.|++
T Consensus 314 ~~~--~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 314 LDQ--PISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp CSS--CEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred CCC--CceEEEECCCCCeEEEEecccccccccc
Confidence 655 8999999999999999999886555544
No 96
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=4.5e-31 Score=301.37 Aligned_cols=295 Identities=13% Similarity=0.159 Sum_probs=240.2
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC-CCCEEEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVA 424 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~ 424 (1096)
...+++++|+...++++|+.||.|+||++.+...... ....+.+|.+.|.+++|+| ++++|++|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s~ 100 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIASG 100 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEEE
Confidence 4557899999875666788999999999966433211 1123788999999999999 99999999
Q ss_pred ECCCeEEEEEccCCCcc----ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe--eCCCCCe
Q 001343 425 FTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF--EGHEAPV 497 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~~~~----~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~--~~~~~~v 497 (1096)
+.||.|++||+.++... .....+.+|...|++++|+|++.. +|++++.|+.|++|| .+++.+..+ .+|...|
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 179 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI 179 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence 99999999999987432 223367899999999999999843 899999999999999 889999999 8899999
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE-eCCCCc-EEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~-i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1096)
.+++|+| ++.+|++++.||.|++||+++++....+ ..|... +.+++|+|++++++++. +...++.|++||+.+++
T Consensus 180 ~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 180 YSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGF-SRMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEE-CTTCCEEEEEEETTBCS
T ss_pred EEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEec-cCCCCceEEEEcCcccc
Confidence 9999987 6689999999999999999998888877 566664 89999999999988883 11128999999999876
Q ss_pred e-eEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeE-EEEeecCCCCCCccEEEEeCCCCEEEEEECCCc
Q 001343 576 I-KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI-LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1096)
Q Consensus 576 ~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 652 (1096)
. +..........+..++|+|+++.+++++ .||.|++||+.+++. +..+..+.+...|.+++|+|++.++++ .++.
T Consensus 257 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~ 334 (402)
T 2aq5_A 257 EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEI 334 (402)
T ss_dssp SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEE
T ss_pred CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--ccee
Confidence 4 4444433333788899999999997655 799999999998874 555554444558999999999988764 5679
Q ss_pred EEEEEcCCC
Q 001343 653 FKILANAIG 661 (1096)
Q Consensus 653 i~iwd~~~~ 661 (1096)
+++|++.++
T Consensus 335 ~~~~~l~~~ 343 (402)
T 2aq5_A 335 ARFYKLHER 343 (402)
T ss_dssp EEEEEEETT
T ss_pred EEEEEcCCC
Confidence 999999776
No 97
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=2.5e-31 Score=291.67 Aligned_cols=248 Identities=15% Similarity=0.219 Sum_probs=204.0
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC--CCC
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGN 419 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~ 419 (1096)
+|.+.|++++|+|+|+ +||+|+.|++|+|||+.+++.... ..+.+|.+.|.+++|+| +++
T Consensus 11 ~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~~~~~ 72 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHPMYGN 72 (316)
T ss_dssp ---CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCGGGSS
T ss_pred cccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCCCCCC
Confidence 5999999999999999 799999999999999987753211 12788999999999986 489
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC--CCcEEEEEEeCCCcEEEEE-cCCce---EEEeeCC
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGRK---LFNFEGH 493 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d--~~~~~l~s~s~d~~i~iwd-~~~~~---~~~~~~~ 493 (1096)
+|++|+.|++|++||+.+++.. ....+.+|...|++++|+|+ +. +|++|+.|++|++|| ..+.. ...+.+|
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred EEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence 9999999999999999886432 22257789999999999998 66 899999999999999 54422 3556789
Q ss_pred CCCeEEEEeeecC---------------CCcEEEEEECCCeEEEEEcCCCC---eeeEEeCCCCcEEEEEEcCCC----C
Q 001343 494 EAPVYSICPHHKE---------------NIQFIFSTAIDGKIKAWLYDTMG---SRVDYDAPGHWCTTMLYSADG----S 551 (1096)
Q Consensus 494 ~~~v~~~~~~~~~---------------~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~~----~ 551 (1096)
...|.+++|+|.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++ .
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~ 229 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc
Confidence 9999999998752 14689999999999999997553 445677888899999999987 7
Q ss_pred EEEEEeeccCCCCeEEEEeCCCC---e-eeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCC
Q 001343 552 RLFSCGTSKDGDSFLVEWNESEG---T-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1096)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~~---~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1096)
+|++++. |+.|++|++.+. . ....+..|.. .+.+++|+|++++|++++.|+.|++|+..
T Consensus 230 ~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~~-~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 230 TIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFND-VVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEEET----TCEEEEEECSSTTCCCCBCCEEEECSS-CEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred eEEEEcC----CCeEEEEEccCccccchhhhhhhcCCC-cEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 8999987 999999998763 1 2234455655 89999999999999999999999999976
No 98
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=1.9e-31 Score=292.69 Aligned_cols=249 Identities=17% Similarity=0.297 Sum_probs=204.9
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC--CCcEEEEEEeCCCcEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d--~~~~~l~s~s~d~~i~ 478 (1096)
++.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++.. ....+.+|.+.|++++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 47789999999999999999999999999999999886432 12368899999999999863 67 899999999999
Q ss_pred EEE-cCC--ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe---eeEEeCCCCcEEEEEEcCC---
Q 001343 479 VWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSAD--- 549 (1096)
Q Consensus 479 iwd-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~--- 549 (1096)
+|| .++ ..+..+.+|...|.+++|+|..++.+|++|+.||+|++||++.... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 999 665 4667788999999999999875578999999999999999987643 2344567778999999997
Q ss_pred --------------CCEEEEEeeccCCCCeEEEEeCCCC---eeeEEEcCcCccceEEEEEeCCC----CEEEEEEcCCe
Q 001343 550 --------------GSRLFSCGTSKDGDSFLVEWNESEG---TIKRTYAGFRKKSNGVVQFDTTQ----NHFLAVGEDSQ 608 (1096)
Q Consensus 550 --------------~~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~ 608 (1096)
+++|++++. |+.|++||++.+ +.+..+.+|.. .|.+++|+|++ .+|++++.|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCCe
Confidence 468888886 999999999755 46677888887 89999999986 78999999999
Q ss_pred EEEEeCCCC---e-EEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 609 IKFWDMDNV---N-ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 609 i~iwd~~~~---~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
|++|++.+. . ....+..+. ..|.+++|+|++++|++++.|+.|++|+..
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~~--~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKFN--DVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEECS--SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEccCccccchhhhhhhcCC--CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999998762 1 122233343 389999999999999999999999999975
No 99
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=8.1e-30 Score=290.57 Aligned_cols=279 Identities=17% Similarity=0.198 Sum_probs=236.6
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCce
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~ 486 (1096)
.+.+++|++ ..+++++.|+.|++||+.+++..... ...|...|++++|+|+++ +|++|+.||.|++|| .+++.
T Consensus 95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd~~~~~~ 168 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIYDVESQTK 168 (401)
T ss_dssp TCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCE
T ss_pred eEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEEECcCCeE
Confidence 355667765 55788889999999999998766532 224899999999999999 899999999999999 88999
Q ss_pred EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcC-CCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCe
Q 001343 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1096)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~ 565 (1096)
+..+.+|...|.+++|+ +.++++++.||.|++||++ .......+..|...|.+++|+|+++++++++. ++.
T Consensus 169 ~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----d~~ 240 (401)
T 4aez_A 169 LRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN----DNV 240 (401)
T ss_dssp EEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSC
T ss_pred EEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC----CCe
Confidence 99999999999999983 3699999999999999999 45556788889999999999999999999987 899
Q ss_pred EEEEeCCCCeeeEEEcCcCccceEEEEEeCCCC-EEEEEE--cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCC
Q 001343 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1096)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 642 (1096)
|++||+.+++.+..+..|.. .+.+++|+|++. .+++++ .|+.|++||+.+++.+..+... ..|.+++|+|++.
T Consensus 241 v~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~s~~~~ 316 (401)
T 4aez_A 241 VQIWDARSSIPKFTKTNHNA-AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQVTSLIWSPHSK 316 (401)
T ss_dssp EEEEETTCSSEEEEECCCSS-CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCEEEEEECSSSS
T ss_pred EEEccCCCCCccEEecCCcc-eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcEEEEEECCCCC
Confidence 99999999999999988877 889999999775 555554 6999999999999999888643 2799999999999
Q ss_pred EEEEEE--CCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCC
Q 001343 643 LLAVTT--ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720 (1096)
Q Consensus 643 ~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~ 720 (1096)
.+++++ .||.|++|++.++. .
T Consensus 317 ~l~~~~g~~dg~i~v~~~~~~~-~-------------------------------------------------------- 339 (401)
T 4aez_A 317 EIMSTHGFPDNNLSIWSYSSSG-L-------------------------------------------------------- 339 (401)
T ss_dssp EEEEEECTTTCEEEEEEEETTE-E--------------------------------------------------------
T ss_pred eEEEEeecCCCcEEEEecCCcc-c--------------------------------------------------------
Confidence 999954 89999999986541 0
Q ss_pred ccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccC
Q 001343 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHR 795 (1096)
Q Consensus 721 ~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~ 795 (1096)
.....+.+ |...|.+++|+|++..+++++.||.|++|++..
T Consensus 340 -------------------------------~~~~~~~~---h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 340 -------------------------------TKQVDIPA---HDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp -------------------------------EEEEEEEC---CSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred -------------------------------eeEEEecC---CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 00112233 888999999999999999999999999999754
No 100
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.4e-30 Score=290.99 Aligned_cols=254 Identities=15% Similarity=0.203 Sum_probs=211.9
Q ss_pred EEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCC--CeeecccceeecccccCccccccccccCCCCEEEEEE
Q 001343 338 AVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR--DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1096)
Q Consensus 338 ~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1096)
+.++. |.+.|++++|+|+|+ +||+|+.||.|+|||+..+ +.+. .+.+|...|.+++|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~ 63 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDW 63 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEE
T ss_pred cEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEEe
Confidence 44454 999999999999999 6999999999999999843 3332 27789999999999
Q ss_pred cCC--CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC--CCcEEEEEEeCCCcEEEEE-cCC--ceE
Q 001343 415 SPD--GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSG--RKL 487 (1096)
Q Consensus 415 spd--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d--~~~~~l~s~s~d~~i~iwd-~~~--~~~ 487 (1096)
+++ +++|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|+.|++|| ..+ ...
T Consensus 64 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~ 140 (379)
T 3jrp_A 64 AHPKFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSP 140 (379)
T ss_dssp CCGGGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCE
T ss_pred CCCCCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceee
Confidence 987 999999999999999999987521 22257789999999999999 88 899999999999999 555 345
Q ss_pred EEeeCCCCCeEEEEeeecC-----------CCcEEEEEECCCeEEEEEcCCCCee----eEEeCCCCcEEEEEEcCC---
Q 001343 488 FNFEGHEAPVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSAD--- 549 (1096)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~l~~s~~--- 549 (1096)
..+.+|...|.+++|+|.. ++.++++++.||.|++||+++.... ..+..|...|.+++|+|+
T Consensus 141 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 220 (379)
T 3jrp_A 141 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 220 (379)
T ss_dssp EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCC
Confidence 5678899999999998742 4689999999999999999876533 456678889999999999
Q ss_pred CCEEEEEeeccCCCCeEEEEeCCCCe---eeEEEc--CcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeE
Q 001343 550 GSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYA--GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1096)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1096)
++++++++. ++.|++||+.++. ....+. .+.. .+.+++|+|++++|++++.||.|++|++..+..
T Consensus 221 ~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 221 RSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp SEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred CCeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 899999987 9999999998864 222222 2444 789999999999999999999999999985443
No 101
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=3.1e-30 Score=288.46 Aligned_cols=296 Identities=10% Similarity=0.124 Sum_probs=219.8
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC--CC
Q 001343 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DG 418 (1096)
Q Consensus 341 l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~ 418 (1096)
.+|.+.|++++|+|+|+ +||+|+.||.|+|||+.++..... ....+.+|...|.+++|+| |+
T Consensus 8 ~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~d~ 71 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAHDSSIVAIDWASPEYG 71 (351)
T ss_dssp CCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECCSSCEEEEEECCGGGC
T ss_pred cccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcce---------------ecceeccCCCcEEEEEEcCCCCC
Confidence 35999999999999999 799999999999999987653211 1123678999999999999 69
Q ss_pred CEEEEEECCCeEEEEEccCCCcc------ccceeecccccCEEEEEEecC--CCcEEEEEEeCCCcEEEEE-cCCceEEE
Q 001343 419 NYVGVAFTKHLIQLYSYAGSNDL------RQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1096)
Q Consensus 419 ~~l~s~~~dg~i~vwd~~~~~~~------~~~~~l~~h~~~v~~l~~s~d--~~~~~l~s~s~d~~i~iwd-~~~~~~~~ 489 (1096)
++|++|+.||.|++||+.+++.. .....+.+|.+.|.+++|+|+ +. +|++++.|+.|++|| .+++.+..
T Consensus 72 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~ 149 (351)
T 3f3f_A 72 RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLRS 149 (351)
T ss_dssp SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTTC
T ss_pred CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhcc
Confidence 99999999999999999886421 223467789999999999999 88 899999999999999 77765544
Q ss_pred ee-------------CCCCCeEEEEeeec-CCCcEEEEEECCCeEEEEEcCCCCe--eeEEeCCCCcEEEEEEcCCC---
Q 001343 490 FE-------------GHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADG--- 550 (1096)
Q Consensus 490 ~~-------------~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~--- 550 (1096)
+. +|...+.+++|+|. .++.++++++.|+.+.+|+...... ...+..|...|.+++|+|++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~ 229 (351)
T 3f3f_A 150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRW 229 (351)
T ss_dssp CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCS
T ss_pred ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCc
Confidence 32 68889999999874 1257999999999998888777665 45666788899999999998
Q ss_pred -CEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEE----EcCCeEEEEeCCCCeEEEEeec
Q 001343 551 -SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV----GEDSQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 551 -~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~ 625 (1096)
+++++++. ++.|++||+.++........... ........+....+..+ .....+.+|+....+.+..+..
T Consensus 230 ~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (351)
T 3f3f_A 230 YQLIATGCK----DGRIRIFKITEKLSPLASEESLT-NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD 304 (351)
T ss_dssp SEEEEEEET----TSCEEEEEEEECC----------------------------------------CCSEEEEEEEEECT
T ss_pred ceEEEEEcC----CCeEEEEeCCCCcCccccCCccc-ceeccCCCcccccccccccccccceeeeecccccccEEEEEec
Confidence 78999886 99999999987655444333222 22223333333333332 3445566677666777777776
Q ss_pred CCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 626 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
|.. .|++++|+|++++|++++.||.|++|++.++
T Consensus 305 h~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 305 HNG--EVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp TSS--CEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred ccc--cEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 655 8999999999999999999999999999876
No 102
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=5.3e-29 Score=285.65 Aligned_cols=267 Identities=17% Similarity=0.280 Sum_probs=224.2
Q ss_pred eeecCCCCcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccC
Q 001343 327 TWSLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (1096)
+|+..+........++ |...|+||+|+|+|+ +||+|+.||+|+|||+.+++.+.. +.+|
T Consensus 129 lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~-~lasgs~Dg~v~iWd~~~~~~~~~-------------------~~~h 188 (420)
T 4gga_A 129 LWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLRN-------------------MTSH 188 (420)
T ss_dssp EEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCC
T ss_pred EEECCCCCEEEEEEecCCCCcEEEEEECCCCC-EEEEEECCCeEEEEEcCCCcEEEE-------------------EeCC
Confidence 9998865444334444 888999999999999 799999999999999999987754 7789
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~ 484 (1096)
...|.+++|+ +.+|++|+.|+.+++||........ ..+.+|...+..+.|+|++. ++++++.|+.|++|+ ..+
T Consensus 189 ~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~--~~~~~h~~~~~~~~~~~~g~--~l~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 189 SARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHV--ATLSGHSQEVCGLRWAPDGR--HLASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp SSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEE--EEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEESSCC
T ss_pred CCceEEEeeC--CCEEEEEeCCCceeEeeecccceee--EEecccccceeeeeecCCCC--eeeeeeccccceEEeeccc
Confidence 9999998874 6799999999999999988754332 25789999999999999999 899999999999999 655
Q ss_pred c----eEEEeeCCCCCeEEEEeeecCCCcEEEEE--ECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 485 R----KLFNFEGHEAPVYSICPHHKENIQFIFST--AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 485 ~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
+ .+.....|...|.+++|+|... .+++++ +.|++|++||+.++.....+..+ ..+.++.|+++++.+++++.
T Consensus 263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~-~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg 340 (420)
T 4gga_A 263 EGGWVPLQTFTQHQGAVKAVAWCPWQS-NVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHG 340 (420)
T ss_dssp SSCSCCSEEECCCSSCEEEEEECTTCT-TEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEEC
T ss_pred cccceeeeeecccCCceeeeeeCCCcc-cEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEe
Confidence 4 3567788999999999988643 566554 57999999999998887777655 46889999999999988753
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEee
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1096)
. .++.|++||+.+++.+.++.+|.. .|.+++|+|+|.+|++|+.|++|+|||+....+.....
T Consensus 341 ~--~d~~I~iwd~~~~~~v~~l~gH~~-~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~ 403 (420)
T 4gga_A 341 F--AQNQLVIWKYPTMAKVAELKGHTS-RVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRE 403 (420)
T ss_dssp T--TTCCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----
T ss_pred c--CCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhh
Confidence 1 278999999999999999999987 89999999999999999999999999998765554443
No 103
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=8.4e-30 Score=295.94 Aligned_cols=247 Identities=12% Similarity=0.185 Sum_probs=205.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCc--------cccceeecccc------------cCEEEEEEecCC-
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND--------LRQHSQIDAHV------------GAVNDLAFAYPN- 463 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~--------~~~~~~l~~h~------------~~v~~l~~s~d~- 463 (1096)
|.+.|.+++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. +.|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 678999999999999999999999999999997752 11233677898 889999999998
Q ss_pred -CcEEEEEEeCCCcEEEEE-cCCceE---------------------------------------EE-eeCCCCCeEEEE
Q 001343 464 -KLLCVVTCGDDKLIKVWE-LSGRKL---------------------------------------FN-FEGHEAPVYSIC 501 (1096)
Q Consensus 464 -~~~~l~s~s~d~~i~iwd-~~~~~~---------------------------------------~~-~~~~~~~v~~~~ 501 (1096)
. .|++++.|++|++|| .++... .. ..+|...|.+++
T Consensus 107 ~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 107 AA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp SS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred cc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 6 899999999999999 543321 12 368999999999
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCCCeeeE--------EeCCCCcEEEEEEcCCC-CEEEEEeeccCCCCeEEEEeCC
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--------YDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNES 572 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------~~~~~~~i~~l~~s~~~-~~l~~~~~~~~~~~~i~iwd~~ 572 (1096)
|+| ++.+|++| .||.|++||++....... +..|...|.+++|+|++ +++++++. ++.|++||++
T Consensus 185 ~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~~ 257 (447)
T 3dw8_B 185 INS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDMR 257 (447)
T ss_dssp ECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEETT
T ss_pred EcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEECc
Confidence 987 66899998 899999999985443332 44778899999999998 89999987 9999999999
Q ss_pred CCee----eEEEcCcCc-----------cceEEEEEeCCCCEEEEEEcCCeEEEEeCCC-CeEEEEeecCCCCCC-----
Q 001343 573 EGTI----KRTYAGFRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPN----- 631 (1096)
Q Consensus 573 ~~~~----~~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~----- 631 (1096)
+++. +..+.++.. ..+.+++|+|++.+|++++. +.|++||+.. ++.+..+..+.....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 336 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL 336 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence 9887 788888765 27999999999999999999 9999999997 888888877643111
Q ss_pred --------ccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 632 --------LPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 632 --------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+..++|+|++.+|++++.||.|++||+.++
T Consensus 337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 234999999999999999999999999887
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.1e-29 Score=283.98 Aligned_cols=253 Identities=19% Similarity=0.299 Sum_probs=217.2
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC--CCcEEEEEEeCCCcEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d--~~~~~l~s~s~d~~i~ 478 (1096)
++.+|.+.|.+++|+|++++||+|+.||.|++||+..+.. .....+.+|.+.|++++|+++ +. +|++|+.||.|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~ 82 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 82 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEE
Confidence 4788999999999999999999999999999999984321 222367899999999999977 77 899999999999
Q ss_pred EEE-cCCc--eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCC--eeeEEeCCCCcEEEEEEcC-----
Q 001343 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSA----- 548 (1096)
Q Consensus 479 iwd-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~----- 548 (1096)
+|| .+++ .+..+.+|...|.+++|+|..++.+|++++.||.|++||++... ....+..+...|.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 999 7776 77888899999999999886336899999999999999998874 3446678888999999999
Q ss_pred --------CCCEEEEEeeccCCCCeEEEEeCCCCe----eeEEEcCcCccceEEEEEeCC---CCEEEEEEcCCeEEEEe
Q 001343 549 --------DGSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFWD 613 (1096)
Q Consensus 549 --------~~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd 613 (1096)
++.++++++. ++.|++||++++. ....+.+|.. .+.+++|+|+ +.+|++++.||.|++||
T Consensus 163 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp -------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 6999999987 9999999997654 5567778877 8999999999 89999999999999999
Q ss_pred CCCCe---EEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 614 MDNVN---ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 614 ~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+.++. .........+...|.+++|+|++++|++++.||.|++|++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 98864 3344444345558999999999999999999999999998754
No 105
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=2.4e-28 Score=269.18 Aligned_cols=236 Identities=18% Similarity=0.250 Sum_probs=197.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceE
Q 001343 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1096)
Q Consensus 409 V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~ 487 (1096)
.++|+||+++ +||+| .|++|+|||+.+++.++.+ .+.+|...|++++|+|+++ +|++|+.||+|++|| .+++++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCceeE
Confidence 5789999986 77776 4899999999999877643 3568899999999999999 899999999999999 999999
Q ss_pred EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe-eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeE
Q 001343 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1096)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i 566 (1096)
..+.+|...+.++.+ ++..+++++.++.+++|+...... ...+..|...+..+.++++++++++++. ++.|
T Consensus 103 ~~~~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i 174 (318)
T 4ggc_A 103 RNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNLV 174 (318)
T ss_dssp EEEECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EEecCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec----Ccce
Confidence 999999999988765 336899999999999999887654 4567888899999999999999999987 9999
Q ss_pred EEEeCCCCee----eEEEcCcCccceEEEEEeCCCCEE---EEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC
Q 001343 567 VEWNESEGTI----KRTYAGFRKKSNGVVQFDTTQNHF---LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1096)
Q Consensus 567 ~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l---~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1096)
++||+.+++. ......+.. .+..+.++|++..+ ++++.++.|++||.............. .+..+.|+|
T Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~---~v~~~~~~~ 250 (318)
T 4ggc_A 175 NVWPSAPGEGGWVPLQTFTQHQG-AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSILWSP 250 (318)
T ss_dssp EEEESSCBTTBSCCSEEECCCCS-CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS---CEEEEEEET
T ss_pred eEEECCCCcccccceeeecccCC-ceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee---eeeeeeecc
Confidence 9999987653 334444544 78889999876543 345678999999999888777665433 689999999
Q ss_pred CCCEEEEEE--CCCcEEEEEcCCC
Q 001343 640 EGNLLAVTT--ADNGFKILANAIG 661 (1096)
Q Consensus 640 ~~~~l~~~~--~dg~i~iwd~~~~ 661 (1096)
++..+++++ .|+.|++||+.++
T Consensus 251 ~~~~~~~~sg~~d~~i~iwd~~~~ 274 (318)
T 4ggc_A 251 HYKELISGHGFAQNQLVIWKYPTM 274 (318)
T ss_dssp TTTEEEEEECTTTCCEEEEETTTC
T ss_pred cccceEEEEEcCCCEEEEEECCCC
Confidence 998887765 7899999998665
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=8.3e-29 Score=285.64 Aligned_cols=273 Identities=16% Similarity=0.266 Sum_probs=230.8
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-
Q 001343 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1096)
Q Consensus 403 ~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd- 481 (1096)
.+|...|.|++| ++++|++|+.||.|++||+.+++... .+.+|.+.|.+++| +++ +|++|+.||+|++||
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 447778999887 79999999999999999999987766 57899999999999 677 899999999999999
Q ss_pred cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCee---eEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 482 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
.+++.+..+.+|...|.+++|+ +..+++|+.||.|++||+++.... ..+..|...|.++++ +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 8999999999999999999984 358999999999999999987765 567788889999999 7889999987
Q ss_pred ccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe
Q 001343 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
++.|++||+++++.+..+.+|.. .+.++.+ +++.+++|+.||.|++||+.+++.+..+..+.. .|.+++|
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~- 344 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF- 344 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCSS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEC-
T ss_pred ----CCeEEEEECCcCcEEEEEcCCCC-cEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC--cEEEEEe-
Confidence 99999999999999999999887 7888888 468999999999999999999999999887755 8999998
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCcc--------ccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCc
Q 001343 639 KEGNLLAVTTADNGFKILANAIGLR--------SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~ 710 (1096)
++.+|++|+.||.|++||+.++.. ....+.++ ...|.+++|
T Consensus 345 -~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~------------------------- 393 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH-----SGRVFRLQF------------------------- 393 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC-----SSCCCCEEE-------------------------
T ss_pred -cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC-----CCCeEEEEe-------------------------
Confidence 788999999999999999876521 22233332 223334443
Q ss_pred CCCcccCCCCccCCCCCCccccCCCCCccceeeee
Q 001343 711 PSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (1096)
Q Consensus 711 ~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~ 745 (1096)
++..+++++.||.|++|++..
T Consensus 394 --------------~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 394 --------------DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp --------------CSSCEEECCSSSEEEEEC---
T ss_pred --------------CCCEEEEEeCCCEEEEEECCC
Confidence 455678999999999999974
No 107
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=8.2e-29 Score=276.12 Aligned_cols=248 Identities=10% Similarity=-0.017 Sum_probs=210.8
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
..+|.+.|.+++|+|++++|++|+.||.|++||+.+++.......+.+|...|.+++|+|+++. +|++|+.||.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 5679999999999999999999999999999999987632222346689999999999999872 488999999999999
Q ss_pred c-CCceEEEeeC--CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC---------CCeeeEEeCCCCcEEEEEEcCC
Q 001343 482 L-SGRKLFNFEG--HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---------MGSRVDYDAPGHWCTTMLYSAD 549 (1096)
Q Consensus 482 ~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~l~~s~~ 549 (1096)
. .......+.+ |...|.+++|++ +.++++++.||.|++||+++ .+....+. +...+.+++|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 86 LIGSPSFQALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSS 161 (342)
T ss_dssp SSSSSSEEECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSS
T ss_pred eccCCceEeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCC
Confidence 7 8878888999 999999999987 47999999999999999987 55555554 6778999999998
Q ss_pred CCEEEEEeeccCCCCeEEEEeCCC-Cee--eEEEcCcCccceEEEEEeC-CCCEEEEEEcCCeEEEEeCCCC------eE
Q 001343 550 GSRLFSCGTSKDGDSFLVEWNESE-GTI--KRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNV------NI 619 (1096)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~ 619 (1096)
+ +++++. ++.|++||+++ +.. ......+.. .+.+++|+| +++++++++.||.|++|+++.. +.
T Consensus 162 ~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 162 R--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp E--EEEEES----TTEEEEEESSCCTTCCCEEEECSCSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred c--EEEEeC----CCeEEEEECCccccccceeeecCCCC-ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc
Confidence 7 777776 89999999988 543 233344444 899999999 9999999999999999999887 77
Q ss_pred EEEeecCCC-------CCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 620 LTSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 620 ~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
...+..+.. ...|.+++|+|++++|++++.||.|++||+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 777776643 348999999999999999999999999998766
No 108
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.6e-28 Score=282.70 Aligned_cols=298 Identities=12% Similarity=0.063 Sum_probs=234.3
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCC---eeecccceeeccccc----------------------------
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRD---RLVSKPFKIWDMAAC---------------------------- 393 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~---~~~~~~~~~~~~~~~---------------------------- 393 (1096)
.++.|++|+|+|+ +|+++ .++.|++||+.+|+ .+.. |.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC-----------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhccccccccccccccc
Confidence 4789999999999 56665 58899999999998 4322 221100
Q ss_pred ------------CccccccccccCCCCEEEEEEcCCCCEE-EEEECCCeEEEEEcc--CCCccccceeecccccCEEEEE
Q 001343 394 ------------SLPFQASIFKDVPISVSRVAWSPDGNYV-GVAFTKHLIQLYSYA--GSNDLRQHSQIDAHVGAVNDLA 458 (1096)
Q Consensus 394 ------------~~~~~~~~~~~h~~~V~~l~~spd~~~l-~s~~~dg~i~vwd~~--~~~~~~~~~~l~~h~~~v~~l~ 458 (1096)
..........+|.+.|.+++|+|++++| ++|+.||.|++||+. +++.+..+. ...|...|++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~ 156 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAIS 156 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEE
Confidence 0000011123577789999999999996 889999999999999 777665321 136789999999
Q ss_pred EecCCCcEEEEEEeCCCcEEEEE-cCCceEE----EeeCCCCCeEEEEeeec-CCCcEEEEEECCCeEEEEEcCCCCeee
Q 001343 459 FAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF----NFEGHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMGSRV 532 (1096)
Q Consensus 459 ~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~----~~~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~ 532 (1096)
|+|+++ +|++|+.|+.|++|+ .+++... .+.+|...|++++|+|. ..+.+|++++.|++|++||++++....
T Consensus 157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 999999 899999999999999 6666443 78899999999999884 126899999999999999999888777
Q ss_pred E-EeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC------------------------ccc
Q 001343 533 D-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR------------------------KKS 587 (1096)
Q Consensus 533 ~-~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~------------------------~~~ 587 (1096)
. ...|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. ...
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 6 55788899999999 9999999987 9999999999999988886431 236
Q ss_pred eEEEEEeCCCCEEEEEE-cCCeEEEEeC--CCC---eEEEEeecCCCCCCccEEEEeCCCCEEEEEEC------CCcEEE
Q 001343 588 NGVVQFDTTQNHFLAVG-EDSQIKFWDM--DNV---NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA------DNGFKI 655 (1096)
Q Consensus 588 i~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~i 655 (1096)
+..++|+|+++++++++ .++.|++|++ ..+ ..+..+..+ ..|.+++|+|++.++++++. +..|.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 78899999999999999 8999999999 555 666667665 37999999996544443332 455888
Q ss_pred EEcCC
Q 001343 656 LANAI 660 (1096)
Q Consensus 656 wd~~~ 660 (1096)
|.+..
T Consensus 387 ~~~~~ 391 (450)
T 2vdu_B 387 IEYNL 391 (450)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 87654
No 109
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.9e-28 Score=273.98 Aligned_cols=214 Identities=11% Similarity=0.133 Sum_probs=181.2
Q ss_pred cccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcc-ccceeecccccCEEEEEEec--CCCcEEEEEEeCCCc
Q 001343 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKL 476 (1096)
Q Consensus 400 ~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~l~~h~~~v~~l~~s~--d~~~~~l~s~s~d~~ 476 (1096)
.++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|++++|+| ++. +|++|+.||.
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~ 82 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKT 82 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSC
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCe
Confidence 457899999999999999999999999999999999976432 23335779999999999999 578 8999999999
Q ss_pred EEEEE-cCC---------ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe-----------
Q 001343 477 IKVWE-LSG---------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD----------- 535 (1096)
Q Consensus 477 i~iwd-~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------- 535 (1096)
|++|| ..+ +.+..+.+|...|.+++|+|..++.+|++++.||.|++||+++.+....+.
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 99999 655 567888999999999999885336899999999999999998776543322
Q ss_pred --CCCCcEEEEEEcCC---CCEEEEEeeccCCCCeEEEEeCCCCee--eEEEcCcCccceEEEEEeCCC----CEEEEEE
Q 001343 536 --APGHWCTTMLYSAD---GSRLFSCGTSKDGDSFLVEWNESEGTI--KRTYAGFRKKSNGVVQFDTTQ----NHFLAVG 604 (1096)
Q Consensus 536 --~~~~~i~~l~~s~~---~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~----~~l~~~~ 604 (1096)
.+...+.+++|+|+ +..+++++. ++.+.+|+...++. +..+.+|.. .+.+++|+|++ ++|++++
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEEEEEEE
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceEEEEEc
Confidence 45668999999997 899999886 88888888877765 667777776 89999999998 7999999
Q ss_pred cCCeEEEEeCCCCeEE
Q 001343 605 EDSQIKFWDMDNVNIL 620 (1096)
Q Consensus 605 ~dg~i~iwd~~~~~~~ 620 (1096)
.||.|++||+..+...
T Consensus 238 ~dg~i~iwd~~~~~~~ 253 (351)
T 3f3f_A 238 KDGRIRIFKITEKLSP 253 (351)
T ss_dssp TTSCEEEEEEEECC--
T ss_pred CCCeEEEEeCCCCcCc
Confidence 9999999999865443
No 110
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=7.8e-29 Score=282.77 Aligned_cols=274 Identities=14% Similarity=0.153 Sum_probs=223.1
Q ss_pred CEEEEEEcCCCCEEE-EEECCCeEEEEEccCCCc-cccceeecccccCEEEEEEec-CCCcEEEEEEeCCCcEEEEE-cC
Q 001343 408 SVSRVAWSPDGNYVG-VAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LS 483 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~-s~~~dg~i~vwd~~~~~~-~~~~~~l~~h~~~v~~l~~s~-d~~~~~l~s~s~d~~i~iwd-~~ 483 (1096)
....++++|+...++ +++.||.|+||++..... ......+.+|.+.|++++|+| ++. +|++|+.||+|++|| .+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECCT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEccC
Confidence 445688998876544 578899999999965432 233345789999999999999 788 899999999999999 66
Q ss_pred C-------ceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE--eCCCCcEEEEEEcCCCCEEE
Q 001343 484 G-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY--DAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 484 ~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~l~~s~~~~~l~ 554 (1096)
+ +++..+.+|...|.+++|+|.+ ..+|++++.||.|++||+++++....+ ..|...|.+++|+|++++|+
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 6 6788899999999999998742 269999999999999999999888888 77888999999999999999
Q ss_pred EEeeccCCCCeEEEEeCCCCeeeEEE-cCcCccceEEEEEeCCCCEEEEE---EcCCeEEEEeCCCCeE-EEEeecCCCC
Q 001343 555 SCGTSKDGDSFLVEWNESEGTIKRTY-AGFRKKSNGVVQFDTTQNHFLAV---GEDSQIKFWDMDNVNI-LTSTDAEGGL 629 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~~ 629 (1096)
+++. ++.|++||+++++.+..+ .+|....+..+.|+|++.++++| +.|+.|++||+.+++. +..... .+.
T Consensus 193 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~ 267 (402)
T 2aq5_A 193 TSCR----DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTS 267 (402)
T ss_dssp EEET----TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCC
T ss_pred EEec----CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCC
Confidence 9987 999999999999999998 77777558889999999999998 6899999999998654 333332 223
Q ss_pred CCccEEEEeCCCCEEEEEE-CCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeE
Q 001343 630 PNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
..+.+++|+|++++|++++ .||.|++|++.++...+..+..+. ...++.+++|+|++.++
T Consensus 268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~---~~~~v~~~~~sp~~~~~ 328 (402)
T 2aq5_A 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS---SKESQRGMGYMPKRGLE 328 (402)
T ss_dssp SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC---CSSCCSEEEECCGGGSC
T ss_pred CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc---cCCcccceEEecccccc
Confidence 4799999999999997555 799999999988743344443332 23567788888776654
No 111
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=6.3e-28 Score=271.97 Aligned_cols=277 Identities=14% Similarity=0.185 Sum_probs=221.4
Q ss_pred ccccCCCCEEEEEEcCC---CCEEEEEECCCeEEEEEccC-CCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCc
Q 001343 401 IFKDVPISVSRVAWSPD---GNYVGVAFTKHLIQLYSYAG-SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd---~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~ 476 (1096)
.+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+. ..+.+|.+.|++++|+|+++ +|++++.||.
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~ 109 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--KAQQMHTGPVLDVCWSDDGS--KVFTASCDKT 109 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE--EEEEECSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE--EEeccccCCEEEEEECcCCC--EEEEEcCCCc
Confidence 37889999999999999 69999999999999999997 44332 25778999999999999999 8999999999
Q ss_pred EEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 477 i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
|++|| .+++.+ .+.+|...|.+++|++.+++.+|++++.||.|++||+++.+....+..+. .+.++.+.+ ..+++
T Consensus 110 v~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~ 185 (368)
T 3mmy_A 110 AKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVV 185 (368)
T ss_dssp EEEEETTTTEEE-EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEE
T ss_pred EEEEEcCCCCce-eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEE
Confidence 99999 666555 46779999999999766688999999999999999999988888877665 466666654 46677
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEE-EcCcCccceEEEEEeCCCCE----EEEEEcCCeEEEEeCCCC---eEEEEeecCC
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRT-YAGFRKKSNGVVQFDTTQNH----FLAVGEDSQIKFWDMDNV---NILTSTDAEG 627 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~----l~~~~~dg~i~iwd~~~~---~~~~~~~~~~ 627 (1096)
++. ++.+.+|++........ ..........++.+.++... +++++.||.|++|++... ..+..+..+.
T Consensus 186 ~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 261 (368)
T 3mmy_A 186 ATA----ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR 261 (368)
T ss_dssp EEG----GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred EeC----CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence 665 88999999987654333 33323335566666655544 999999999999999887 4555665553
Q ss_pred CC----------CCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEec
Q 001343 628 GL----------PNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1096)
Q Consensus 628 ~~----------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~ 695 (1096)
.. ..|.+++|+|++++|++++.||.|++||+.++ +.+..+..+ ..+|.+++|+|+|++++++
T Consensus 262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-----~~~v~~~~~s~~g~~l~~~ 333 (368)
T 3mmy_A 262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR-TKLKTSEQL-----DQPISACCFNHNGNIFAYA 333 (368)
T ss_dssp EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT-EEEEECCCC-----SSCEEEEEECTTSSCEEEE
T ss_pred cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC-cEEEEecCC-----CCCceEEEECCCCCeEEEE
Confidence 21 15999999999999999999999999999887 556666654 3468889998887776444
No 112
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.5e-29 Score=309.57 Aligned_cols=251 Identities=15% Similarity=0.196 Sum_probs=210.5
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC--CC
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--GN 419 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--~~ 419 (1096)
+|.+.|++++|+|+|+ +|++|+.||.|+|||+.++.... ...+.+|.+.|.+++|+|+ ++
T Consensus 7 gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~-----------------~~~l~~h~~~V~~l~~s~~~~~~ 68 (753)
T 3jro_A 7 AHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKL-----------------IDTLTGHEGPVWRVDWAHPKFGT 68 (753)
T ss_dssp -CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEE-----------------EEEECCCSSCEEEEEECCTTSCS
T ss_pred cCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCcc-----------------ceeccCCcCceEEEEecCCCCCC
Confidence 4999999999999999 59999999999999998433211 1137789999999999998 99
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC--CCcEEEEEEeCCCcEEEEE-cCC--ceEEEeeCCC
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSG--RKLFNFEGHE 494 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d--~~~~~l~s~s~d~~i~iwd-~~~--~~~~~~~~~~ 494 (1096)
+|++|+.||.|++||+.+++.. ....+.+|...|++++|+|+ +. .+++|+.||.|++|| ..+ .....+.+|.
T Consensus 69 ~l~s~s~Dg~I~vwd~~~~~~~-~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~ 145 (753)
T 3jro_A 69 ILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145 (753)
T ss_dssp EEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEEECCS
T ss_pred EEEEEeCCCeEEEEECCCCccc-ccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEeecCC
Confidence 9999999999999999987521 22257789999999999999 88 899999999999999 555 3456678899
Q ss_pred CCeEEEEeeecC-----------CCcEEEEEECCCeEEEEEcCCCC----eeeEEeCCCCcEEEEEEcCC---CCEEEEE
Q 001343 495 APVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMG----SRVDYDAPGHWCTTMLYSAD---GSRLFSC 556 (1096)
Q Consensus 495 ~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~---~~~l~~~ 556 (1096)
..|.+++|+|.. ++.++++|+.||.|++||+++.. ....+..|...|.+++|+|+ +++++++
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~ 225 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 225 (753)
T ss_dssp SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE
Confidence 999999998742 46799999999999999998774 33466788889999999999 8999999
Q ss_pred eeccCCCCeEEEEeCCCCe-----eeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe
Q 001343 557 GTSKDGDSFLVEWNESEGT-----IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1096)
+. ++.|++||+.++. .......+.. .+.+++|+|++.++++++.||.|++|++..+.
T Consensus 226 s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 226 SQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ES----SSCEEEEEESSSSSCCBCCBSSSSCCSS-CCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ec----CCEEEEecCCCCCCcceeEEeccCCCCC-ceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 87 9999999998864 2222233444 78889999999999999999999999998643
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=3.3e-28 Score=271.36 Aligned_cols=276 Identities=13% Similarity=0.164 Sum_probs=215.4
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.|.+.|+|++|+|||+ +||+|+.+ .++|||+.+++.... .+...+..++++++++++
T Consensus 17 ~h~~~V~~v~fs~dg~-~la~g~~~-~~~iw~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~ 73 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQS-CLILSTLK-SFEIYNVHPVAHIMS---------------------QEMRHLSKVRMLHRTNYV 73 (355)
T ss_dssp --CCCCCEEEECTTSS-EEEEECSS-EEEEEEETTEEEEEE---------------------EECSCCCEEEECTTSSEE
T ss_pred cCCCceEEEEECCCCC-EEEEEcCC-EEEEEecCCcceeee---------------------eecCCeEEEEEcCCCCEE
Confidence 3999999999999999 79988766 578999987765532 122257888999998888
Q ss_pred E-EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC-ceEEEeeCCCCCeE
Q 001343 422 G-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHEAPVY 498 (1096)
Q Consensus 422 ~-s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~-~~~~~~~~~~~~v~ 498 (1096)
+ +++.|++|++||..+++.+. .+. |...|.+++|+++. ++.+. |+.|++|| .++ +.+..+.. +..
T Consensus 74 ~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~ 141 (355)
T 3vu4_A 74 AFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVSY-GDVISVFKFGNPWKRITDDIR---FGG 141 (355)
T ss_dssp EEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEEE-TTEEEEEESSTTCCBSSCCEE---EEE
T ss_pred EEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEEE-cCEEEEEECCCCceeeEEecc---CCc
Confidence 5 57778999999999988766 343 67799999998763 34443 88999999 666 66666654 344
Q ss_pred EEEeeecCCCcEEEE--EECCCeEEEEEcCCCC----------------eeeEEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 499 SICPHHKENIQFIFS--TAIDGKIKAWLYDTMG----------------SRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
.+++++ .++++ |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|++++.
T Consensus 142 ~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~-- 215 (355)
T 3vu4_A 142 VCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ-- 215 (355)
T ss_dssp EEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred eEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC--
Confidence 455544 35555 6899999999998765 25678899999999999999999999997
Q ss_pred CCCCe-EEEEeCCCCeeeEEEc-C-cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEE--EEe------------
Q 001343 561 DGDSF-LVEWNESEGTIKRTYA-G-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL--TST------------ 623 (1096)
Q Consensus 561 ~~~~~-i~iwd~~~~~~~~~~~-~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~------------ 623 (1096)
|+. |++||+.+++.+..+. + |.. .+.+++|+|++++|++++.|+.|++||+..+... ..+
T Consensus 216 --d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (355)
T 3vu4_A 216 --DGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSE 292 (355)
T ss_dssp --TCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCS
T ss_pred --CCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccc
Confidence 998 9999999999999998 5 655 8999999999999999999999999999764311 111
Q ss_pred ------ecC-CCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 624 ------DAE-GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 624 ------~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
... ........++|+++++.+++++.||.+++|++..+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 293 WSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp SCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred cceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 000 11123477999999999999999999999998665
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=8e-27 Score=265.36 Aligned_cols=276 Identities=9% Similarity=0.046 Sum_probs=224.0
Q ss_pred cEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE-EEEECCCeEEEEEcc
Q 001343 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV-GVAFTKHLIQLYSYA 436 (1096)
Q Consensus 358 ~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l-~s~~~dg~i~vwd~~ 436 (1096)
+++++++.|+.|++||+.+++.+.. +.+| ..+.+++|+|+|++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 4788999999999999999887643 3444 458999999999987 566689999999999
Q ss_pred CCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEE-EEE
Q 001343 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFI-FST 514 (1096)
Q Consensus 437 ~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~ 514 (1096)
+++.+. .+..+. .+.+++|+|+++. ++++++.|+.|++|| .+++.+..+..+ ..+.+++|++ +++.+ +++
T Consensus 63 ~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~~ 134 (391)
T 1l0q_A 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVTN 134 (391)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEEE
T ss_pred CCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEEe
Confidence 987665 344343 8999999999993 335666789999999 778888777754 4689999976 55666 788
Q ss_pred ECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEe
Q 001343 515 AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD 594 (1096)
Q Consensus 515 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~ 594 (1096)
+.++.|++||+.+++....+..+ ..+.+++|+|+++.+++++. .++.|++||+.+++.+..+..+. .+..++|+
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~ 208 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVN 208 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEEC
T ss_pred CCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecCC--CccceEEC
Confidence 88999999999988877776654 45799999999998854432 27899999999999888876543 67889999
Q ss_pred CCCCEEEEEE---cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEE-EEEECCCcEEEEEcCCCccccccccC
Q 001343 595 TTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAVEN 670 (1096)
Q Consensus 595 ~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~ 670 (1096)
|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.|+.|++||+.++ +....+..
T Consensus 209 ~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~~ 284 (391)
T 1l0q_A 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMAV 284 (391)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEEC
T ss_pred CCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEEC
Confidence 9999999988 68999999999999988887654 57899999999877 56678999999999887 55555544
Q ss_pred C
Q 001343 671 P 671 (1096)
Q Consensus 671 ~ 671 (1096)
+
T Consensus 285 ~ 285 (391)
T 1l0q_A 285 G 285 (391)
T ss_dssp S
T ss_pred C
Confidence 4
No 115
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=5.8e-28 Score=277.60 Aligned_cols=266 Identities=14% Similarity=0.242 Sum_probs=215.7
Q ss_pred ceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 336 ~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
.....+.|.+.|++++|+|++..+||+|+.||.|+|||+.+....... .........+.+|...|.+++|+
T Consensus 120 ~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~~ 190 (430)
T 2xyi_A 120 EIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP---------SGECQPDLRLRGHQKEGYGLSWN 190 (430)
T ss_dssp EEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT---------TCCCCCSEEEECCSSCCCCEEEC
T ss_pred EEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc---------cccCCCcEEecCCCCCeEEEEeC
Confidence 345567799999999999985448999999999999999863111000 00000112377899999999999
Q ss_pred CCCC-EEEEEECCCeEEEEEccCCCcc----ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC---ce
Q 001343 416 PDGN-YVGVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RK 486 (1096)
Q Consensus 416 pd~~-~l~s~~~dg~i~vwd~~~~~~~----~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~---~~ 486 (1096)
|++. +|++|+.||.|++||+.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++|| .++ +.
T Consensus 191 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~ 269 (430)
T 2xyi_A 191 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKP 269 (430)
T ss_dssp TTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSC
T ss_pred CCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcc
Confidence 9998 9999999999999999885332 123356789999999999995443 899999999999999 555 57
Q ss_pred EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC-CCeeeEEeCCCCcEEEEEEcCCCC-EEEEEeeccCCCC
Q 001343 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDS 564 (1096)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~~~~~~~ 564 (1096)
+..+..|...|++++|+|.+ ..++++|+.||.|++||++. ......+..|...|.+++|+|+++ ++++++. ++
T Consensus 270 ~~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~ 344 (430)
T 2xyi_A 270 SHTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DR 344 (430)
T ss_dssp SEEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TS
T ss_pred eeEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CC
Confidence 78888999999999998843 24799999999999999998 456778888999999999999996 5777775 89
Q ss_pred eEEEEeCCC--------------CeeeEEEcCcCccceEEEEEeCCCC-EEEEEEcCCeEEEEeCCCC
Q 001343 565 FLVEWNESE--------------GTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV 617 (1096)
Q Consensus 565 ~i~iwd~~~--------------~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 617 (1096)
.|++||+.. .+.+..+.+|.. .+..++|+|++. ++++++.||.|++|++...
T Consensus 345 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cEEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 999999987 356677777776 899999999998 8999999999999998753
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=3.6e-27 Score=272.32 Aligned_cols=302 Identities=9% Similarity=0.071 Sum_probs=245.7
Q ss_pred eeecCCC--CcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCcccccccccc
Q 001343 327 TWSLDDL--PRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 327 ~~~~~~~--~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
+|.++.. ....+..+.+...+.+++|+|++. ++++++.++.|++||+.+++...... ...+.+
T Consensus 103 l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~~~ 167 (433)
T 3bws_A 103 LIALDKEGITHRFISRFKTGFQPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSP--------------PEKYKK 167 (433)
T ss_dssp EEECCBTTCSEEEEEEEECSSCBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECC--------------CHHHHT
T ss_pred EEEECCCCCcceEEEEEcCCCCceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecC--------------cccccc
Confidence 6666553 335666677667788999999665 78888889999999999988764211 112567
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cC
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~ 483 (1096)
|...|.+++|+|+++++++++.|+.|++||+.+++... .+..|...+.+++|+|+++. ++++++.|+.|++|| .+
T Consensus 168 ~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 168 KLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDRKT 243 (433)
T ss_dssp TCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEETTT
T ss_pred cCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEECCC
Confidence 99999999999999999999999999999999887665 46689999999999999993 335666899999999 78
Q ss_pred CceEEEeeCCCCCeEEEEeeecCCCcEEEEEE--------CCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTA--------IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
++.+..+..+ ..+.+++|+| ++.++++++ .||.|++||+.+++..... .+...+.+++|+|+++.+++
T Consensus 244 ~~~~~~~~~~-~~~~~~~~~~--~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~ 319 (433)
T 3bws_A 244 KLEIRKTDKI-GLPRGLLLSK--DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYV 319 (433)
T ss_dssp TEEEEECCCC-SEEEEEEECT--TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEE
T ss_pred CcEEEEecCC-CCceEEEEcC--CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEE
Confidence 8888777754 4588999976 667888887 5899999999987665544 33447889999999987765
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEc---------------CCeEEEEeCCCCeEE
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---------------DSQIKFWDMDNVNIL 620 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~ 620 (1096)
.+. .++.|++||+.+++.+..+... . .+..++|+|+++++++++. ||.|++||..+++.+
T Consensus 320 ~~~---~~~~v~v~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~ 394 (433)
T 3bws_A 320 SDM---CCSKIEVYDLKEKKVQKSIPVF-D-KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK 394 (433)
T ss_dssp EET---TTTEEEEEETTTTEEEEEEECS-S-SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred Eec---CCCEEEEEECCCCcEEEEecCC-C-CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE
Confidence 532 2899999999999988888633 3 6788999999999988876 579999999999999
Q ss_pred EEeecCCCCCCccEEEEeCCCCEEEEEEC-CCcEEEEEcC
Q 001343 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANA 659 (1096)
Q Consensus 621 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~ 659 (1096)
..+.... .+.+++|+|++++|++++. |+.|++|++.
T Consensus 395 ~~~~~~~---~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 395 EFWEAGN---QPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEECSS---SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEecCCC---CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 8887632 6899999999999998875 9999999985
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=3.2e-27 Score=271.48 Aligned_cols=307 Identities=14% Similarity=0.215 Sum_probs=235.8
Q ss_pred CCceEEEEEcCCCC---------cEEEEEeC----CCeEEEEecCCCCeeec----------ccceeecccccCcccccc
Q 001343 344 GSTVISMDFHPSHQ---------TLLLVGSS----NGEITLWELAMRDRLVS----------KPFKIWDMAACSLPFQAS 400 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~---------~llasg~~----dg~I~iwd~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 400 (1096)
.-+..|+.|.|+.. ..+++|+. ...|.|+++.-...... ..+..+. .....+...
T Consensus 45 ~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~ 122 (430)
T 2xyi_A 45 EWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFG--SVCGKIEIE 122 (430)
T ss_dssp SSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC----------------------------CEEEE
T ss_pred CCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCcccccccccccccccccccc--CCCCceEEE
Confidence 34678999999752 35777764 35677776541100000 0000000 001112223
Q ss_pred ccccCCCCEEEEEEcCC-CCEEEEEECCCeEEEEEccCC-------CccccceeecccccCEEEEEEecCCCcEEEEEEe
Q 001343 401 IFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGS-------NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG 472 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd-~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s 472 (1096)
...+|.+.|++++|+|+ +.+||+++.||.|++||+.+. ........+.+|...|++++|+|++.. +|++|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~ 201 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSAS 201 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEEC
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEe
Confidence 35679999999999997 789999999999999999862 112233367899999999999999876 799999
Q ss_pred CCCcEEEEE-cCCce-------EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC---CeeeEEeCCCCcE
Q 001343 473 DDKLIKVWE-LSGRK-------LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM---GSRVDYDAPGHWC 541 (1096)
Q Consensus 473 ~d~~i~iwd-~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~i 541 (1096)
.||.|++|| ..+.. ...+.+|...|.+++|+|. ++.+|++++.||.|++||+++. .....+..|...|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 999999999 54221 4567789999999999875 3479999999999999999977 4566777888999
Q ss_pred EEEEEcCCCC-EEEEEeeccCCCCeEEEEeCCC-CeeeEEEcCcCccceEEEEEeCCCC-EEEEEEcCCeEEEEeCCC--
Q 001343 542 TTMLYSADGS-RLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDN-- 616 (1096)
Q Consensus 542 ~~l~~s~~~~-~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~-- 616 (1096)
.+++|+|++. .+++++. ++.|++||+++ ...+..+.+|.. .+.+++|+|++. .+++++.||.|++||+..
T Consensus 281 ~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp EEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred EEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 9999999998 5777776 99999999998 567888888877 899999999985 689999999999999987
Q ss_pred ------------CeEEEEeecCCCCCCccEEEEeCCCC-EEEEEECCCcEEEEEcCCC
Q 001343 617 ------------VNILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 617 ------------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~ 661 (1096)
.+.+.....|.. .|.+++|+|++. ++++++.||.|++|++...
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 356 EEQSTEDAEDGPPELLFIHGGHTA--KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCCCHHHHHHCCTTEEEECCCCSS--CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cccCccccccCCcceEEEcCCCCC--CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 245555555544 899999999998 9999999999999998654
No 118
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=9.1e-27 Score=259.72 Aligned_cols=238 Identities=10% Similarity=0.161 Sum_probs=187.5
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+.+|...|.+++|+|||++||+|+.++ +++||+++++.... .+...+..+++.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS-----QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE-----EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee-----eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 577999999999999999999998774 78999987654331 22235888899988883 346788889999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC-CeeeEEeCCCCcEEEEEEcCCCCEEEEE-ee
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSC-GT 558 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~-~~ 558 (1096)
.+++++..+. +..+|.++++++ + .++++ .|+.|++||+.+. +....+.. ....+++++ .+++++ +.
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~ 156 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEF 156 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESS
T ss_pred CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCC
Confidence 8899998887 667899999864 2 34444 4889999999987 55444433 445566667 566664 21
Q ss_pred ccCCCCeEEEEeCCCCe----------------eeEEEcCcCccceEEEEEeCCCCEEEEEEcCCe-EEEEeCCCCeEEE
Q 001343 559 SKDGDSFLVEWNESEGT----------------IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILT 621 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~----------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~ 621 (1096)
.++.|++||+.++. .+..+.+|.. .|.+++|+|++++|++|+.|++ |++||+.+++.+.
T Consensus 157 ---~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~ 232 (355)
T 3vu4_A 157 ---NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR 232 (355)
T ss_dssp ---CTTCEEEEECCC------------------CCEEECCCSS-CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE
T ss_pred ---cCcEEEEEECCCCCccccccccccccccCcccEEEEccCC-ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 28999999999875 2778889987 8999999999999999999998 9999999999999
Q ss_pred EeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.+....+...|.+++|+|++++|++++.|+.|++||+..+
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 9883212348999999999999999999999999999765
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.4e-28 Score=295.46 Aligned_cols=253 Identities=19% Similarity=0.294 Sum_probs=214.4
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC--CCcEEEEEEeCCCcEE
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d--~~~~~l~s~s~d~~i~ 478 (1096)
++.+|.+.|++++|+|++++|++|+.||.|+|||+.++.. .....+.+|.+.|++++|+++ ++ +|++|+.||+|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 4789999999999999999999999999999999984322 223367899999999999988 77 899999999999
Q ss_pred EEE-cCCc--eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCC--eeeEEeCCCCcEEEEEEcC-----
Q 001343 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSA----- 548 (1096)
Q Consensus 479 iwd-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~----- 548 (1096)
+|| .+++ .+..+.+|..+|++++|+|..++.++++|+.||.|++||++... ....+..+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 999 6666 77888899999999999886336899999999999999998773 3456678888999999999
Q ss_pred --------CCCEEEEEeeccCCCCeEEEEeCCCC----eeeEEEcCcCccceEEEEEeCC---CCEEEEEEcCCeEEEEe
Q 001343 549 --------DGSRLFSCGTSKDGDSFLVEWNESEG----TIKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFWD 613 (1096)
Q Consensus 549 --------~~~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd 613 (1096)
++..+++++. ++.|++||++++ .....+.+|.. .+.+++|+|+ +.++++++.||.|++||
T Consensus 161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5899999987 999999999876 56677888877 8999999999 89999999999999999
Q ss_pred CCCCeEE---EEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 614 MDNVNIL---TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 614 ~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+.+++.. .......+...|.+++|+|++.++++++.||.|++|++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9886421 12222334458999999999999999999999999999765
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=3.4e-26 Score=264.17 Aligned_cols=336 Identities=13% Similarity=0.134 Sum_probs=253.9
Q ss_pred CCEEEEE---EcCCCCEEEEEE--------------CCCeEEEEEcc--CCCccccceeecccccCEEEEEEecCCCcEE
Q 001343 407 ISVSRVA---WSPDGNYVGVAF--------------TKHLIQLYSYA--GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467 (1096)
Q Consensus 407 ~~V~~l~---~spd~~~l~s~~--------------~dg~i~vwd~~--~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~ 467 (1096)
..+..++ |+|+++.+++.+ .++.+.+|.++ ++. ......+..+ ..+.+++|+|++. +
T Consensus 61 ~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~ 136 (433)
T 3bws_A 61 IALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--L 136 (433)
T ss_dssp EEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--E
T ss_pred CccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--E
Confidence 3456666 677666555432 23323455443 332 1222234433 4566999999665 7
Q ss_pred EEEEeCCCcEEEEE-cCCceEE-----EeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcE
Q 001343 468 VVTCGDDKLIKVWE-LSGRKLF-----NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWC 541 (1096)
Q Consensus 468 l~s~s~d~~i~iwd-~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i 541 (1096)
+++++.|+.|++|| .+++.+. .+.+|...|.+++|++ ++.++++++.|+.|++||+++.+....+..+...+
T Consensus 137 ~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~ 214 (433)
T 3bws_A 137 AIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE--HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWS 214 (433)
T ss_dssp EEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG--GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSE
T ss_pred EEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC--CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCe
Confidence 88888899999999 7788776 4568899999999965 56899999999999999999988888888888899
Q ss_pred EEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE--------cCCeEEEEe
Q 001343 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--------EDSQIKFWD 613 (1096)
Q Consensus 542 ~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------~dg~i~iwd 613 (1096)
.+++|+|+++.+++++. .++.|++||+.+++.+..+..+. .+..++|+|+++.+++++ .||.|++||
T Consensus 215 ~~~~~~~~~~~l~~~~~---~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d 289 (433)
T 3bws_A 215 KILLYDPIRDLVYCSNW---ISEDISVIDRKTKLEIRKTDKIG--LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYS 289 (433)
T ss_dssp EEEEEETTTTEEEEEET---TTTEEEEEETTTTEEEEECCCCS--EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred eEEEEcCCCCEEEEEec---CCCcEEEEECCCCcEEEEecCCC--CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEE
Confidence 99999999998876552 27899999999999988887654 588899999999999988 488999999
Q ss_pred CCCCeEEEEeecCCCCCCccEEEEeCCCCEE-EEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeE
Q 001343 614 MDNVNILTSTDAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1096)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 692 (1096)
+.+++.+..+.... .+.+++|+|+++.+ ++++.|+.|++||+.++ +...
T Consensus 290 ~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-~~~~-------------------------- 339 (433)
T 3bws_A 290 MDKEKLIDTIGPPG---NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-KVQK-------------------------- 339 (433)
T ss_dssp TTTTEEEEEEEEEE---CEEEEEECSSTTEEEEEETTTTEEEEEETTTT-EEEE--------------------------
T ss_pred CCCCcEEeeccCCC---CcceEEECCCCCEEEEEecCCCEEEEEECCCC-cEEE--------------------------
Confidence 99998877764332 67899999999755 56688999999998655 1110
Q ss_pred EecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEE
Q 001343 693 VSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLY 772 (1096)
Q Consensus 693 v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 772 (1096)
.+. +...+.+++|
T Consensus 340 -------------------------------------------------------------~~~------~~~~~~~~~~ 352 (433)
T 3bws_A 340 -------------------------------------------------------------SIP------VFDKPNTIAL 352 (433)
T ss_dssp -------------------------------------------------------------EEE------CSSSEEEEEE
T ss_pred -------------------------------------------------------------Eec------CCCCCCeEEE
Confidence 001 3446778999
Q ss_pred ecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-C
Q 001343 773 TNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-G 851 (1096)
Q Consensus 773 s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-d 851 (1096)
+|+++.+++++.+.. .. +..++++++ |
T Consensus 353 s~dg~~l~~~~~~~~------------------------------------------~~----------~~~~~~~g~~d 380 (433)
T 3bws_A 353 SPDGKYLYVSCRGPN------------------------------------------HP----------TEGYLKKGLVL 380 (433)
T ss_dssp CTTSSEEEEEECCCC------------------------------------------CT----------TTCTTSCCSSC
T ss_pred cCCCCEEEEEecCCC------------------------------------------cc----------ccccccccccc
Confidence 999987777765411 00 223344555 7
Q ss_pred CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeC-CCeEEEEeecc
Q 001343 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE-DSTIHIYNVRV 904 (1096)
Q Consensus 852 g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~-dg~i~iw~~~~ 904 (1096)
|.|++||+.+++.+..+.. ...+.+++|+| ++++|++++. |+.|++|+++.
T Consensus 381 g~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 381 GKVYVIDTTTDTVKEFWEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CEEEEEETTTTEEEEEEEC-SSSEEEEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred eEEEEEECCCCcEEEEecC-CCCCceEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 9999999999999988876 45789999999 8999888775 99999999863
No 121
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1e-26 Score=244.05 Aligned_cols=279 Identities=11% Similarity=0.112 Sum_probs=198.3
Q ss_pred cEEEEeCCCC---EEEEEECCCcEEEEEcCCCc--cccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccC
Q 001343 633 PRLRFSKEGN---LLAVTTADNGFKILANAIGL--RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707 (1096)
Q Consensus 633 ~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~ 707 (1096)
.++-|-..+. .+++++. ..|++|+..++. +.+.++..+. .+|..+.+.||...+++..-
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~---------- 106 (356)
T 2w18_A 43 SAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAE-----VPVLQIVPVPDVYNLVCVAL---------- 106 (356)
T ss_dssp EEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCS-----SCEEEECCCTTCCSCEEEEE----------
T ss_pred eeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccC-----ceeEEEEEcCcccceeeeee----------
Confidence 3444544332 6666765 489999998873 4455555553 35667787777554422211
Q ss_pred CCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecC----CceEEEee
Q 001343 708 PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS----AVGLLALG 783 (1096)
Q Consensus 708 ~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~----~~~l~~~~ 783 (1096)
| ..+...|+.++++|| ++.+++++
T Consensus 107 ----------------------------~------------------------~~~~~~v~sla~spd~~~~~~~l~s~g 134 (356)
T 2w18_A 107 ----------------------------G------------------------NLEIREIRALFCSSDDESEKQVLLKSG 134 (356)
T ss_dssp ----------------------------C------------------------SSSEEEEEEECC------CCEEEEEEE
T ss_pred ----------------------------c------------------------cccccceEEEEECCCccccccEEEeCC
Confidence 0 115668999999999 88777766
Q ss_pred cCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec---CCeEEEEEc-
Q 001343 784 SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT---GGKISLFNM- 859 (1096)
Q Consensus 784 ~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~---dg~v~iwd~- 859 (1096)
.+ +++|.+ ++|+++.++. |+.|++|++
T Consensus 135 ~~--~~v~~l-----------------------------------------------~~g~lv~ss~~g~d~~V~~~~~s 165 (356)
T 2w18_A 135 NI--KAVLGL-----------------------------------------------TKRRLVSSSGTLSDQQVEVMTFA 165 (356)
T ss_dssp EE--EEEEEE-----------------------------------------------TTTEEEEEESSSTTCEEEEEEEC
T ss_pred Ce--EEEEec-----------------------------------------------CCCcEEEecccCCCCcEEEEEEC
Confidence 33 444442 3566777744 788888888
Q ss_pred ccceEEEeecCCCCCeeEEEEec--CCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCC--CCCc
Q 001343 860 MTFKVMTTFMSPPPASTFLAFHP--QDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTP--TGDT 935 (1096)
Q Consensus 860 ~~~~~~~~~~~h~~~i~~l~~s~--~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~v~ 935 (1096)
.+|+.+..+.+|...++.++|++ +++.+|++|+.|++|+|||+.+++ +++.+.+|.. ..+.
T Consensus 166 ~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk---------------~l~tL~g~~~~v~~v~ 230 (356)
T 2w18_A 166 EDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ---------------LLKKMHIDDSYQASVC 230 (356)
T ss_dssp TTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC---------------EEEEEECCC---CCCE
T ss_pred CCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc---------------EEEEEcCCCcceeeeE
Confidence 55888888888999998888887 467899999999999999999988 4445544322 3677
Q ss_pred eEEEecCCcEEE------------E-EecceEEEEEcccceeccccc----cCCCCCCCceEEEEeeCCcEEEEEecCCc
Q 001343 936 RVQFNADQVRML------------V-VHETQLAIYDASKMERIRQWT----PQDALSAPISCAVYSCNSQLVFATFCDGN 998 (1096)
Q Consensus 936 ~v~fs~dg~~l~------------~-~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~i~~l~~s~dg~~la~~~~dg~ 998 (1096)
+++|||||++++ + +.|++|++||..+++++..+. .+| ...+.+.. .++.++|+++.|++
T Consensus 231 ~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh--~~~~lsg~--~sg~~lASgS~DgT 306 (356)
T 2w18_A 231 HKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQ--AGRFLEGD--VKDHCAAAILTSGT 306 (356)
T ss_dssp EEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTC--CCCEEEEE--EETTEEEEEETTSC
T ss_pred EEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCC--cceeEccc--cCCCEEEEEcCCCc
Confidence 889999999874 3 468999999999999876552 232 44444333 44889999999999
Q ss_pred EEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEcc
Q 001343 999 IGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEP 1059 (1096)
Q Consensus 999 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v 1059 (1096)
|+|||+.+++++..+. + |...+.+ .++|+| ||++|++|+.|++|++||+
T Consensus 307 IkIWDl~tGk~l~tL~-------g---H~~~vvs-~vafSP-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 307 IAIWDLLLGQCTALLP-------P---VSDQHWS-FVKWSG-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEETTTCSEEEEEC-------C---C--CCCC-EEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred EEEEECCCCcEEEEec-------C---CCCCeEE-EEEECC-CCCEEEEEECCCcEEEecC
Confidence 9999999999887765 3 7766664 589999 9999999999999999986
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=3.9e-27 Score=266.78 Aligned_cols=302 Identities=12% Similarity=0.091 Sum_probs=200.2
Q ss_pred CceEEEEE---cCCCCcEEEEEeCCCeEEEEecCCCCeeec-----ccceeecccccC-----ccccccccccCCCCEEE
Q 001343 345 STVISMDF---HPSHQTLLLVGSSNGEITLWELAMRDRLVS-----KPFKIWDMAACS-----LPFQASIFKDVPISVSR 411 (1096)
Q Consensus 345 ~~V~~v~f---sp~g~~llasg~~dg~I~iwd~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~~~~~~h~~~V~~ 411 (1096)
....++.| +|++..++++| .++.|.+|+......... ..+..+...... .+........|...+..
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNV 94 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC--------
T ss_pred CCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcce
Confidence 34566666 55665566666 588899998653321111 011111110000 00001112334445555
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEccCCCccc--cceeecccccCEEEEEEec--------CCCcEEEEEEeCCCcEEEEE
Q 001343 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR--QHSQIDAHVGAVNDLAFAY--------PNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 412 l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~l~~h~~~v~~l~~s~--------d~~~~~l~s~s~d~~i~iwd 481 (1096)
..+++++.+||+|+.|++|+|||..+++... ....+.+|.+.|++++|+| |++ +|+||+.|++|+|||
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWR 172 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEE
Confidence 5666678899999999999999999876542 2235789999999999998 777 899999999999999
Q ss_pred -cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE-------------------------e
Q 001343 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------------------------D 535 (1096)
Q Consensus 482 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------------------------~ 535 (1096)
.++.++..+.+|..+|.+++|+|.+ ..+|++++.||+|++||+++++..... .
T Consensus 173 ~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 173 LTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp EETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred CCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 7888888888999999999998842 358999999999999999876543321 2
Q ss_pred CCCCcEEEEEEc-CCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEE------------------EEEeC-
Q 001343 536 APGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV------------------VQFDT- 595 (1096)
Q Consensus 536 ~~~~~i~~l~~s-~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~------------------~~~~~- 595 (1096)
.+...+.++.|+ ++++.+++++. ++.+++||+..++....+..+.. .+.. ..++|
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMCK----SGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred cccccceeeeeecCCCCEEEEEeC----CCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEEccC
Confidence 345567888886 89999999987 99999999988776666554432 2221 22333
Q ss_pred -CCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 596 -TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 596 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
++.++++|+.||.|++||+.+++.......+.. .|.+++|+|||++||+++.+| +.+|.+
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 233566677899999999999988877776655 899999999999999998776 666655
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=1.3e-25 Score=255.40 Aligned_cols=322 Identities=11% Similarity=0.031 Sum_probs=243.3
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1096)
+|+.+ .+++...+.+...+.+++|+|+|++++++++.|+.|++||+.+++.+.. +..+
T Consensus 16 v~d~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~-------------------~~~~- 73 (391)
T 1l0q_A 16 VIDVT--SNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-------------------VPAG- 73 (391)
T ss_dssp EEETT--TTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-------------------EECS-
T ss_pred EEECC--CCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE-------------------EECC-
Confidence 77765 4567777776678999999999996668888999999999999887643 2223
Q ss_pred CCEEEEEEcCCCCEEEEEE-CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCC
Q 001343 407 ISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~ 484 (1096)
..|.+++|+|++++|++++ .++.|++||+.+++.+. .+. +...+.+++|+|+++. ++++++.|+.|++|| .++
T Consensus 74 ~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~---~~~-~~~~~~~~~~s~dg~~-l~~~~~~~~~v~~~d~~~~ 148 (391)
T 1l0q_A 74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG---TVK-TGKSPLGLALSPDGKK-LYVTNNGDKTVSVINTVTK 148 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EEE-CSSSEEEEEECTTSSE-EEEEETTTTEEEEEETTTT
T ss_pred CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE---EEe-CCCCcceEEECCCCCE-EEEEeCCCCEEEEEECCCC
Confidence 3899999999999886555 56999999999987655 233 4457899999999993 337888899999999 888
Q ss_pred ceEEEeeCCCCCeEEEEeeecCCCcEE-EEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCC
Q 001343 485 RKLFNFEGHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 485 ~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~ 563 (1096)
+.+..+..+. .+.+++|++ ++..+ ++++.++.|++||+++.+....+. +...+.+++|+|+++++++++.+ ..+
T Consensus 149 ~~~~~~~~~~-~~~~~~~~~--dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~-~~~ 223 (391)
T 1l0q_A 149 AVINTVSVGR-SPKGIAVTP--DGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVD-KYF 223 (391)
T ss_dssp EEEEEEECCS-SEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEEC-SSC
T ss_pred cEEEEEecCC-CcceEEECC--CCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecC-cCC
Confidence 8888887654 568899976 55666 677889999999999887666554 34578999999999999988731 127
Q ss_pred CeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEE-EEEEcCCeEEEEeCCCCeEEEEeecCCCCCC-ccEEE-----
Q 001343 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF-LAVGEDSQIKFWDMDNVNILTSTDAEGGLPN-LPRLR----- 636 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~----- 636 (1096)
+.|++||+.+++.+..+..+. .+..++|+|+++++ ++++.|+.|++||+.+++.+..+..+..... ...+.
T Consensus 224 ~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (391)
T 1l0q_A 224 NTVSMIDTGTNKITARIPVGP--DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQ 301 (391)
T ss_dssp CEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSC
T ss_pred CcEEEEECCCCeEEEEEecCC--CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccc
Confidence 899999999999999888765 46789999999988 5567899999999999999888765432100 01122
Q ss_pred -------EeCCC----------CEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEe
Q 001343 637 -------FSKEG----------NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (1096)
Q Consensus 637 -------~s~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~ 694 (1096)
|+.+. ..+...+.|...++|++.++.... .. -....|+++|.+.+.
T Consensus 302 ~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~-----~~-------~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 302 PVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK-----KQ-------NPTHTYSETGIYTVR 364 (391)
T ss_dssp CCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC-----SS-------SCEECCSSCEEEEEE
T ss_pred ccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC-----cC-------CCeEEeCCCceEEEE
Confidence 22211 235555668889999998773211 11 112578888877643
No 124
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.4e-26 Score=264.93 Aligned_cols=241 Identities=15% Similarity=0.093 Sum_probs=199.6
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeec--------------------------------------
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-------------------------------------- 448 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~-------------------------------------- 448 (1096)
.++.+++|+|||++|+++ .++.|++||+.+|+....+..+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 378899999999977666 57899999999988211111222
Q ss_pred ----------------ccccCEEEEEEecCCCcEEE-EEEeCCCcEEEEE-c--CCceEEEee--CCCCCeEEEEeeecC
Q 001343 449 ----------------AHVGAVNDLAFAYPNKLLCV-VTCGDDKLIKVWE-L--SGRKLFNFE--GHEAPVYSICPHHKE 506 (1096)
Q Consensus 449 ----------------~h~~~v~~l~~s~d~~~~~l-~s~s~d~~i~iwd-~--~~~~~~~~~--~~~~~v~~~~~~~~~ 506 (1096)
+|.+.|++++|+|+++ +| ++|+.||.|++|| . +++.+..+. .|...|.+++|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-- 159 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-- 159 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSS--EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCC--EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--
Confidence 3555799999999999 64 8999999999999 6 788888886 5678899999977
Q ss_pred CCcEEEEEECCCeEEEEEcCCCCeee----EEeCCCCcEEEEEEcCC---CCEEEEEeeccCCCCeEEEEeCCCCeeeEE
Q 001343 507 NIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSAD---GSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1096)
Q Consensus 507 ~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~l~~s~~---~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 579 (1096)
++.+|++++.+|.|++|++.+..... .+..|...|.+++|+|+ +++|++++. ++.|++||+.+++.+..
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFIVDK 235 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTCEEE
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCceeee
Confidence 66899999999999999998776543 66778889999999999 999999987 89999999999998887
Q ss_pred E-cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC-----------------------CCCCCccEE
Q 001343 580 Y-AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-----------------------GGLPNLPRL 635 (1096)
Q Consensus 580 ~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~~~ 635 (1096)
+ .+|.. .+.+++|+ ++.+|++++.|+.|++||+.+++.+..+..+ .....|.++
T Consensus 236 ~~~~h~~-~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 313 (450)
T 2vdu_B 236 WLFGHKH-FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI 313 (450)
T ss_dssp ECCCCSS-CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred eecCCCC-ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence 4 46766 89999999 9999999999999999999999988887632 112357788
Q ss_pred EEeCCCCEEEEEE-CCCcEEEEEc
Q 001343 636 RFSKEGNLLAVTT-ADNGFKILAN 658 (1096)
Q Consensus 636 ~~s~~~~~l~~~~-~dg~i~iwd~ 658 (1096)
+|+|+++++++++ .|+.|++|++
T Consensus 314 ~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 314 IKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEe
Confidence 8888888888887 7888888887
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.2e-27 Score=263.96 Aligned_cols=267 Identities=8% Similarity=0.064 Sum_probs=211.2
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeE
Q 001343 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (1096)
Q Consensus 351 ~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i 430 (1096)
.+.+++. ++++|+.||.|++||+.+++.+.. +. ...|.++.|+|+ +++|+.|++|
T Consensus 43 ~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~-------------------~~--~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 43 SMYYDKW-VCMCRCEDGALHFTQLKDSKTITT-------------------IT--TPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp SSSEEEE-EEEEEEETTEEEEEEESSSSCEEE-------------------EE--EECCCTTCCCCS---EEEECSTTEE
T ss_pred hhcCCCC-EEEEECCCCcEEEEECCCCcEEEE-------------------Ee--cCCceeeeeCCc---eEEecCCCeE
Confidence 4456777 799999999999999999987653 11 346777888888 9999999999
Q ss_pred EEEEcc---------CCCccccceeecccccCEEEEEEec--CCCcEEEEEEeCCCcEEEEE-cCCceEEEee-CCCCCe
Q 001343 431 QLYSYA---------GSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-GHEAPV 497 (1096)
Q Consensus 431 ~vwd~~---------~~~~~~~~~~l~~h~~~v~~l~~s~--d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~-~~~~~v 497 (1096)
++|+.. +++.+.. ...+|.+.|.+++|+| +++ ++++|+.||+|++|| .+++.+.... .|...|
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i 173 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEY 173 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCC
T ss_pred EEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCce
Confidence 999766 3332222 1236778999999999 999 899999999999999 8888876664 456689
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCee-eEEeC-CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-VDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~-~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1096)
.+++|+| ++.+|++|+.||.|++||++++... ..+.. |...|.+++|+|++.+|++++ ++.|++||+++++
T Consensus 174 ~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-----~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 174 SSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-----DQTVVCFDLRKDV 246 (343)
T ss_dssp CEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-----SSBEEEEETTSST
T ss_pred EEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-----CCeEEEEEcCCCC
Confidence 9999977 6789999999999999999998887 67777 889999999999999999998 4499999999987
Q ss_pred eeEEEcCcCc--cce--EEEEEeCCCCEEEEEEc-CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC---CCCEEEEE
Q 001343 576 IKRTYAGFRK--KSN--GVVQFDTTQNHFLAVGE-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK---EGNLLAVT 647 (1096)
Q Consensus 576 ~~~~~~~~~~--~~i--~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~ 647 (1096)
.+..+..+.. ..+ .+++|+|++++|++++. |+.|++|++......... ..+..+.|.+ +...++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~ 320 (343)
T 3lrv_A 247 GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVV 320 (343)
T ss_dssp TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEE
T ss_pred cceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEE
Confidence 7655543211 122 36999999999999998 999999999765433332 1566778888 88899999
Q ss_pred ECCCcEEEEEcC
Q 001343 648 TADNGFKILANA 659 (1096)
Q Consensus 648 ~~dg~i~iwd~~ 659 (1096)
+.|+.+.++-..
T Consensus 321 ~~d~~~~~~~~~ 332 (343)
T 3lrv_A 321 CGDGGIAAILKT 332 (343)
T ss_dssp EETTEEEEEEEC
T ss_pred ecCCceEEEEec
Confidence 999999987543
No 126
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.7e-27 Score=263.36 Aligned_cols=280 Identities=10% Similarity=0.016 Sum_probs=211.4
Q ss_pred ccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCC
Q 001343 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP 800 (1096)
Q Consensus 721 ~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~ 800 (1096)
.+..++.++++|+.||+|++||+.. ......+ ....|.++.|+|+ +++++.|+++++|+...
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~---~~~~~~~-------~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~----- 104 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKD---SKTITTI-------TTPNPRTGGEHPA---IISRGPCNRLLLLYPGN----- 104 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESS---SSCEEEE-------EEECCCTTCCCCS---EEEECSTTEEEEEETTT-----
T ss_pred hhcCCCCEEEEECCCCcEEEEECCC---CcEEEEE-------ecCCceeeeeCCc---eEEecCCCeEEEEEccC-----
Confidence 3456788899999999999999973 2222222 2345677788887 89999999999999754
Q ss_pred CCceeeecCccccccCccccccccccCCCcCCCeeeeeecC--CCcEEEEec-CCeEEEEEcccceEEEeec-CCCCCee
Q 001343 801 SGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK--NDSYVMSAT-GGKISLFNMMTFKVMTTFM-SPPPAST 876 (1096)
Q Consensus 801 ~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~--dg~~la~~~-dg~v~iwd~~~~~~~~~~~-~h~~~i~ 876 (1096)
.+.+|+..++..+.....+ |...|.+++|+| +++++++++ ||+|++||+.+++.+.... .|...++
T Consensus 105 --------~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~ 174 (343)
T 3lrv_A 105 --------QITILDSKTNKVLREIEVD--SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYS 174 (343)
T ss_dssp --------EEEEEETTTCCEEEEEECC--CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCC
T ss_pred --------ceEEeecCCcceeEEeecC--CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceE
Confidence 4567888877755533333 778999999999 999999998 7999999999999877764 4455899
Q ss_pred EEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceee-ecCCC-CCCCCCceEEEecCCcEEEEEecceE
Q 001343 877 FLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTI-HIPAG-KTPTGDTRVQFNADQVRMLVVHETQL 954 (1096)
Q Consensus 877 ~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~-~~~~~-~~~~~v~~v~fs~dg~~l~~~~d~~i 954 (1096)
+++|+| ++.+|++|+.||.|++||+.+++ .+ ..+.+ |.. .|.+++|+|+|.+|+++.++.|
T Consensus 175 ~~~~~p-dg~~lasg~~dg~i~iwd~~~~~---------------~~~~~~~~~h~~-~v~~l~fs~~g~~l~s~~~~~v 237 (343)
T 3lrv_A 175 SGVLHK-DSLLLALYSPDGILDVYNLSSPD---------------QASSRFPVDEEA-KIKEVKFADNGYWMVVECDQTV 237 (343)
T ss_dssp EEEECT-TSCEEEEECTTSCEEEEESSCTT---------------SCCEECCCCTTS-CEEEEEECTTSSEEEEEESSBE
T ss_pred EEEECC-CCCEEEEEcCCCEEEEEECCCCC---------------CCccEEeccCCC-CEEEEEEeCCCCEEEEEeCCeE
Confidence 999999 99999999999999999999877 23 34555 776 9999999999999999667799
Q ss_pred EEEEcccceeccccccCCCCCCCce--EEEEeeCCcEEEEEec-CCcEEEEecCCCceeEEEccccccCCCccCCCcccc
Q 001343 955 AIYDASKMERIRQWTPQDALSAPIS--CAVYSCNSQLVFATFC-DGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVY 1031 (1096)
Q Consensus 955 ~iwd~~~~~~~~~~~~~~~~~~~i~--~l~~s~dg~~la~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 1031 (1096)
++||+.+++++..+.....+...+. +++|+|+|++|++++. |+.|+||++++........ ++.
T Consensus 238 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~~--------------~~~ 303 (343)
T 3lrv_A 238 VCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKD--------------EES 303 (343)
T ss_dssp EEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEEE--------------EEE
T ss_pred EEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEec--------------Cce
Confidence 9999999887766554211133344 6999999999999998 9999999997665222211 222
Q ss_pred ceEEEecCC--CCceEEEEeeCCcEEEEccCC
Q 001343 1032 PLVVAAHPL--EPNQFAIGLTDGSVKVMEPSE 1061 (1096)
Q Consensus 1032 s~~l~~s~~--d~~~l~s~~~dg~i~vW~v~~ 1061 (1096)
.++|.+. +...+++++.||.+.++-...
T Consensus 304 --~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 304 --ALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp --ECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred --eEecCccccccceeEEEecCCceEEEEecC
Confidence 2455431 466788888888888775433
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=4.3e-25 Score=258.81 Aligned_cols=341 Identities=11% Similarity=0.139 Sum_probs=252.6
Q ss_pred EcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeC--CCCeEEEEe
Q 001343 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM--DNVNILTST 623 (1096)
Q Consensus 546 ~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~ 623 (1096)
++|++..+++++. ++.|.+||..+++++.++..... +..++|+|+|+++++++.|+.|++||+ .+++.+..+
T Consensus 145 ~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 145 LDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred cCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence 6788877777765 89999999999999999984433 778999999999999999999999999 888888888
Q ss_pred ecCCCCCCccEEEEeC----CCCEEEEEEC-CCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCC
Q 001343 624 DAEGGLPNLPRLRFSK----EGNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (1096)
Q Consensus 624 ~~~~~~~~v~~~~~s~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~ 698 (1096)
.... .+..++|+| +|+++++++. +++|.+||..++ +.++.+......
T Consensus 219 ~~g~---~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~-~~~~~i~~~g~~------------------------ 270 (543)
T 1nir_A 219 KIGI---EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMT------------------------ 270 (543)
T ss_dssp ECCS---EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEEC------------------------
T ss_pred ecCC---CcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc-ccceeecccCcc------------------------
Confidence 7432 579999999 9999998884 899999998766 333322211000
Q ss_pred CceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCce
Q 001343 699 ANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778 (1096)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 778 (1096)
+ ..... . ....+..+.++|++..
T Consensus 271 -----------------------------------------~--------~~~~~--~------~~~~v~~i~~s~~~~~ 293 (543)
T 1nir_A 271 -----------------------------------------V--------DTQTY--H------PEPRVAAIIASHEHPE 293 (543)
T ss_dssp -----------------------------------------S--------SSCCE--E------SCCCEEEEEECSSSSE
T ss_pred -----------------------------------------c--------Ccccc--c------cCCceEEEEECCCCCE
Confidence 0 00000 0 2347889999998776
Q ss_pred EEEee-cCCeEEEeeccCCccCCCCceeeecCccccccCccccccc-cccCCCcCCCeeeeeecCCCcEEEEec--CCeE
Q 001343 779 LLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN-DVAGVNLEEAVPCIALSKNDSYVMSAT--GGKI 854 (1096)
Q Consensus 779 l~~~~-~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~-~~~g~~~~~~v~~l~~s~dg~~la~~~--dg~v 854 (1096)
++++. .++.|.+|++.... .+.. .+. +...+..++|+|||+++++++ +++|
T Consensus 294 ~~vs~~~~g~i~vvd~~~~~----------------------~l~~~~i~---~~~~~~~~~~spdg~~l~va~~~~~~v 348 (543)
T 1nir_A 294 FIVNVKETGKVLLVNYKDID----------------------NLTVTSIG---AAPFLHDGGWDSSHRYFMTAANNSNKV 348 (543)
T ss_dssp EEEEETTTTEEEEEECTTSS----------------------SCEEEEEE---CCSSCCCEEECTTSCEEEEEEGGGTEE
T ss_pred EEEEECCCCeEEEEEecCCC----------------------cceeEEec---cCcCccCceECCCCCEEEEEecCCCeE
Confidence 65554 47899999874321 1110 111 345677899999999876655 6899
Q ss_pred EEEEcccceEEEeecC----CCCCeeEEEEecCCCcEEEEee-CCCeEEEEeeccceeeeeeccccccccceeeecCCCC
Q 001343 855 SLFNMMTFKVMTTFMS----PPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGK 929 (1096)
Q Consensus 855 ~iwd~~~~~~~~~~~~----h~~~i~~l~~s~~d~~~l~s~~-~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 929 (1096)
.+||..+++++..+.. |.+....+ ++|+++.+++++. .|++|.+|++.+.. ......++++.+.++
T Consensus 349 ~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~--------~~~~~~~~v~~l~~~ 419 (543)
T 1nir_A 349 AVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKN--------HPQYAWKKVAELQGQ 419 (543)
T ss_dssp EEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTT--------CTTTBTSEEEEEECS
T ss_pred EEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCC--------CchhcCeEEEEEEcC
Confidence 9999999999988874 55444443 5773477777775 68999999998722 000112366777777
Q ss_pred CCCCCceEEEecCCcEEEEEe--------cceEEEEEcccceec-cccc-------cCCCCCCCceEEEEeeCCcEEEEE
Q 001343 930 TPTGDTRVQFNADQVRMLVVH--------ETQLAIYDASKMERI-RQWT-------PQDALSAPISCAVYSCNSQLVFAT 993 (1096)
Q Consensus 930 ~~~~v~~v~fs~dg~~l~~~~--------d~~i~iwd~~~~~~~-~~~~-------~~~~~~~~i~~l~~s~dg~~la~~ 993 (1096)
.. .+..++|+|||++|+++. +++|.|||+.++++. ..+. ..+ ...+..++|+|||++|+++
T Consensus 420 g~-~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~g~~~~~s 496 (543)
T 1nir_A 420 GG-GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG--AKRVVQPEYNKRGDEVWFS 496 (543)
T ss_dssp CS-CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS--CCEEEEEEECSSSSEEEEE
T ss_pred CC-CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC--CCceEeccCCCCCCEEEEE
Confidence 65 788999999999999943 779999999999876 3321 222 6789999999999998876
Q ss_pred e-----cCCcEEEEecCCCceeEEEc
Q 001343 994 F-----CDGNIGVFDADTLRLRCYIA 1014 (1096)
Q Consensus 994 ~-----~dg~i~vwd~~~~~~~~~~~ 1014 (1096)
. .|+.|.|||..++++...+.
T Consensus 497 ~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 497 VWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp EECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred eecCCCCCCeEEEEECCCceEEEeec
Confidence 3 47999999999999887776
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=2e-25 Score=234.23 Aligned_cols=284 Identities=14% Similarity=0.097 Sum_probs=195.7
Q ss_pred eEEEEEcCC-CCcEEEEEeCCCeEEEEecCCC---CeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 347 VISMDFHPS-HQTLLLVGSSNGEITLWELAMR---DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 347 V~~v~fsp~-g~~llasg~~dg~I~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
|.++-|-.- .+.+.++......|++|+..++ +.+++ +.+|+.+|..+.+.||..-|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~-------------------~~~~~~~v~~~~~~~~~~~~~ 102 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYT-------------------WHFAEVPVLQIVPVPDVYNLV 102 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEE-------------------EECCSSCEEEECCCTTCCSCE
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEE-------------------EeccCceeEEEEEcCccccee
Confidence 556666443 3334444456889999999998 44433 666777777777777643322
Q ss_pred -EEECCCeE-EEEEcc--CC-CccccceeecccccCEEEEEEecCCCcEEEEEEe--CCCcEEEEE--cCCceEEEeeCC
Q 001343 423 -VAFTKHLI-QLYSYA--GS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE--LSGRKLFNFEGH 493 (1096)
Q Consensus 423 -s~~~dg~i-~vwd~~--~~-~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s--~d~~i~iwd--~~~~~~~~~~~~ 493 (1096)
++-.+=.+ .++-+. .. +.......-.+|...|..+ ++++ ++.+++ .|+.|++|+ .+|+.+..+.+|
T Consensus 103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~--lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRR--LVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp EEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTE--EEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred eeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCc--EEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 22111111 111111 00 1111111123444445444 4554 444433 599999999 558888889999
Q ss_pred CCCeEEEEeee-cCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCC---cEEEEEEcCCCCEEEEEee--------ccC
Q 001343 494 EAPVYSICPHH-KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH---WCTTMLYSADGSRLFSCGT--------SKD 561 (1096)
Q Consensus 494 ~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~l~~s~~~~~l~~~~~--------~~~ 561 (1096)
...+..++|++ .+++.+|++++.|++|++||+.+++.+..+..+.. .+.+++|+|+|.++++++. +..
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 99999999998 67789999999999999999999999998876543 6778899999998865431 122
Q ss_pred CCCeEEEEeCCCCeeeEEE-----cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEE
Q 001343 562 GDSFLVEWNESEGTIKRTY-----AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1096)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1096)
.+++|++||..+++.+..+ .+|.. .+. ..+.++..+++++.|++|+|||+.+++.+.++.+|... .+..++
T Consensus 258 ~D~tIklWd~~tgk~l~v~~~~~p~Gh~~-~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~-vvs~va 333 (356)
T 2w18_A 258 PVFQLIVINPKTTLSVGVMLYCLPPGQAG-RFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQ-HWSFVK 333 (356)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCCTTCCC-CEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--C-CCCEEE
T ss_pred CCcEEEEEECCCCEEEEEEEeeccCCCcc-eeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCC-eEEEEE
Confidence 3899999999999988766 35544 232 33334788999999999999999999999999876541 344689
Q ss_pred EeCCCCEEEEEECCCcEEEEEc
Q 001343 637 FSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
|+|||++|++|+.|++|+|||+
T Consensus 334 fSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 334 WSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ECSSSSEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEecC
Confidence 9999999999999999999985
No 129
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=2.1e-26 Score=260.82 Aligned_cols=248 Identities=6% Similarity=-0.074 Sum_probs=176.2
Q ss_pred ecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC----
Q 001343 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP---- 416 (1096)
Q Consensus 341 l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---- 416 (1096)
..|...+....+++++. ++|+|+.|++|+|||+.+++..... ....+.+|.+.|++++|+|
T Consensus 86 ~~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~--------------~~~~~~gH~~~v~~v~~~p~~~~ 150 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQH--------------VLGGKSGHHNFVNDIDIADVYSA 150 (393)
T ss_dssp C----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEE--------------EECTTTSCSSCEEEEEEEEEECT
T ss_pred cccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceee--------------eecccCCCCCceEEEEEcccccc
Confidence 34556666666777776 7999999999999999988765321 1124789999999999998
Q ss_pred ----CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEE--
Q 001343 417 ----DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN-- 489 (1096)
Q Consensus 417 ----d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~-- 489 (1096)
|+++||+|+.|++|+|||+.++.... .+.+|...|.+++|+|++.. +|++|+.|++|++|| .+++....
T Consensus 151 ~~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~ 226 (393)
T 4gq1_A 151 DNRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENS 226 (393)
T ss_dssp TCSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC------
T ss_pred ccCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCccccccc
Confidence 89999999999999999998876555 46679999999999998864 799999999999999 66654322
Q ss_pred -----------------------eeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEE-
Q 001343 490 -----------------------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML- 545 (1096)
Q Consensus 490 -----------------------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~- 545 (1096)
..+|...+.++.|.+ +++..|++++.|+++++||+........+..+...+..+.
T Consensus 227 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~-~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~ 305 (393)
T 4gq1_A 227 QTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG-SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNL 305 (393)
T ss_dssp ----CSCCCSEEEESGGGC------CCSSSCSEEEEET-TTTCEEEEECTTSEEEEEEC-------------------CC
T ss_pred ccCCcccceEEecccccceeeeecccccccceeeeeec-CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEE
Confidence 246778888998863 4778999999999999999987665554444433333332
Q ss_pred -----------------EcC-CCC-EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC
Q 001343 546 -----------------YSA-DGS-RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1096)
Q Consensus 546 -----------------~s~-~~~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 606 (1096)
+++ .+. ++++++. ++.|++||..+++....+.+|.. .|.+++|+|+|++|++++.+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~----Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~~ 380 (393)
T 4gq1_A 306 LPNVQGISLFPSLLGACPHPRYMDYFATAHSQ----HGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATEG 380 (393)
T ss_dssp SCSEEEECSSCCSSCCEECSSCTTEEEEEETT----TTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEESS
T ss_pred ccccccccccCcceeEEEccCCCCEEEEEECC----CCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeCC
Confidence 222 233 4455554 89999999999999888888877 89999999999999999876
Q ss_pred CeEEEEeC
Q 001343 607 SQIKFWDM 614 (1096)
Q Consensus 607 g~i~iwd~ 614 (1096)
| +.+|.+
T Consensus 381 G-v~lvrL 387 (393)
T 4gq1_A 381 S-VLLTRL 387 (393)
T ss_dssp E-EEEEEE
T ss_pred C-eEEEEE
Confidence 5 556654
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=6.4e-24 Score=248.80 Aligned_cols=275 Identities=10% Similarity=0.079 Sum_probs=217.9
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccc-cCCCCEEEEEEcCCCCEEEEEECCCe
Q 001343 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWSPDGNYVGVAFTKHL 429 (1096)
Q Consensus 351 ~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spd~~~l~s~~~dg~ 429 (1096)
+|+|++. ++++++.|++|.+||..+++.+.. +. ++. +.+++|+|||++|++++.|+.
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence 3889987 799999999999999999988753 33 333 889999999999999999999
Q ss_pred EEEEEc--cCCCccccceeecccccCEEEEEEec----CCCcEEEEEEe-CCCcEEEEE-cCCceEEEeeCC--------
Q 001343 430 IQLYSY--AGSNDLRQHSQIDAHVGAVNDLAFAY----PNKLLCVVTCG-DDKLIKVWE-LSGRKLFNFEGH-------- 493 (1096)
Q Consensus 430 i~vwd~--~~~~~~~~~~~l~~h~~~v~~l~~s~----d~~~~~l~s~s-~d~~i~iwd-~~~~~~~~~~~~-------- 493 (1096)
|.+||+ .+++.+. ++. +...+..++|+| ||+ ++++++ .+++|.+|| .+++++..+..+
T Consensus 202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 999999 7776655 344 455689999999 999 676666 589999999 899998887642
Q ss_pred --C-CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEE
Q 001343 494 --E-APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1096)
Q Consensus 494 --~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iw 569 (1096)
. ..+.++.+++.. ..++++...++.|.+||+.+.+... ....+...+..++|+|+|+++++++. .++.|.+|
T Consensus 276 ~~~~~~v~~i~~s~~~-~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~---~~~~v~v~ 351 (543)
T 1nir_A 276 YHPEPRVAAIIASHEH-PEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAAN---NSNKVAVI 351 (543)
T ss_dssp EESCCCEEEEEECSSS-SEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEG---GGTEEEEE
T ss_pred cccCCceEEEEECCCC-CEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEec---CCCeEEEE
Confidence 2 368889987753 3577788889999999998765543 12234556888999999998877653 27899999
Q ss_pred eCCCCeeeEEEcC----cCccceEEEEEeCC-CCEEEEEE-cCCeEEEEeCCC-------CeEEEEeecCCCCCCccEEE
Q 001343 570 NESEGTIKRTYAG----FRKKSNGVVQFDTT-QNHFLAVG-EDSQIKFWDMDN-------VNILTSTDAEGGLPNLPRLR 636 (1096)
Q Consensus 570 d~~~~~~~~~~~~----~~~~~i~~~~~~~~-~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~~~ 636 (1096)
|..+++++..+.. |....+ .+ ++|+ +..++++. .|++|.+||+.+ .+.++.+..++. .+..++
T Consensus 352 D~~tg~l~~~i~~g~~ph~g~g~-~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~--~~~~v~ 427 (543)
T 1nir_A 352 DSKDRRLSALVDVGKTPHPGRGA-NF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--GSLFIK 427 (543)
T ss_dssp ETTTTEEEEEEECSSSBCCTTCE-EE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEE
T ss_pred ECCCCeEEEeeccCCCCCCCCCc-cc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC--CceEEE
Confidence 9999999998875 332122 22 5777 44555554 589999999998 889999998765 678899
Q ss_pred EeCCCCEEEEEE-------CCCcEEEEEcCCC
Q 001343 637 FSKEGNLLAVTT-------ADNGFKILANAIG 661 (1096)
Q Consensus 637 ~s~~~~~l~~~~-------~dg~i~iwd~~~~ 661 (1096)
++|+++.|++++ .+++|.+||+.++
T Consensus 428 ~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 428 THPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp CCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred cCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 999999999987 2679999999877
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=4.1e-24 Score=243.18 Aligned_cols=304 Identities=9% Similarity=0.014 Sum_probs=232.3
Q ss_pred CceEEEEEcCCCCcEEEEEe----CCC----eEEEEec--CCCCeeecccceeecccccCccccccccccCCCCEEEEEE
Q 001343 345 STVISMDFHPSHQTLLLVGS----SNG----EITLWEL--AMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~----~dg----~I~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1096)
..|...+|++.|..++++|+ .|| .|+|||+ .+++.+... .+.+|...+..+++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~ 125 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQN-----------------SYKVNKQWLRYAGH 125 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEE-----------------EEEECGGGHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeee-----------------EEEcChhHHHHHHH
Confidence 47888899999988888886 467 9999999 888876431 15567666776666
Q ss_pred cC--------------CCCEEEEEECC------CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC
Q 001343 415 SP--------------DGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1096)
Q Consensus 415 sp--------------d~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d 474 (1096)
++ .+..++.++.+ +.|++||++++. .+ .+.+|...|.+++|+|||+ .|++++.|
T Consensus 126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~ 199 (415)
T 2hqs_A 126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEECT
T ss_pred HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEec
Confidence 64 26677766654 799999998543 33 5778999999999999999 88998887
Q ss_pred C---cEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEE-EEECCCe--EEEEEcCCCCeeeEEeCCCCcEEEEEEc
Q 001343 475 K---LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIF-STAIDGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYS 547 (1096)
Q Consensus 475 ~---~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~l~~s 547 (1096)
+ .|++|| .+++.. .+..|...+.+++|+| +|+.|+ +++.+|. |++||+.+++. ..+..+...+.+++|+
T Consensus 200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s 275 (415)
T 2hqs_A 200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF 275 (415)
T ss_dssp TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC
T ss_pred CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC
Confidence 5 999999 666654 6777888999999977 667776 6666654 99999987665 4566677789999999
Q ss_pred CCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC---CeEEEEeCCCCeEEEEee
Q 001343 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTD 624 (1096)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 624 (1096)
|||+.|++++. .++...|++||+.+++.. .+..+.. .+..++|+|+|++|++++.+ ..|++||+.+++... +.
T Consensus 276 pdg~~l~~~s~-~~g~~~i~~~d~~~~~~~-~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~ 351 (415)
T 2hqs_A 276 PDSQNLAFTSD-QAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LS 351 (415)
T ss_dssp TTSSEEEEEEC-TTSSCEEEEEETTSSCCE-ECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CC
T ss_pred CCCCEEEEEEC-CCCCcEEEEEECCCCCEE-EEecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ec
Confidence 99999998873 223448999999888743 3444443 67789999999999988764 589999999887743 33
Q ss_pred cCCCCCCccEEEEeCCCCEEEEEECCC---cEEEEEcCCCccccccccCCCcccccCcceeEEeecCC
Q 001343 625 AEGGLPNLPRLRFSKEGNLLAVTTADN---GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA 689 (1096)
Q Consensus 625 ~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 689 (1096)
.+. .+.+++|+|+|++|++++.++ .|++||+..+ ....+..+. ..|.+++|+|.-
T Consensus 352 ~~~---~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~~~l~~~~-----~~v~~~~~~~~~ 409 (415)
T 2hqs_A 352 STF---LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPATD-----GQVKFPAWSPYL 409 (415)
T ss_dssp CSS---SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CEEECCCSS-----SEEEEEEECCCC
T ss_pred CCC---CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cEEEeeCCC-----CCCcCCcccccc
Confidence 332 689999999999999998877 7999998644 344555543 347788998764
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=8.2e-23 Score=253.30 Aligned_cols=334 Identities=12% Similarity=0.067 Sum_probs=231.2
Q ss_pred CCceEEEEEcCCCCcEEEEEeC-CC-----eEEEEecCCCCeeecccceeec-----ccccCccccccccccCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSS-NG-----EITLWELAMRDRLVSKPFKIWD-----MAACSLPFQASIFKDVPISVSRV 412 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~-dg-----~I~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~h~~~V~~l 412 (1096)
...|.+++|||||+ +||+++. |+ .|.+||+.+++........... +.......+...-......|.++
T Consensus 36 ~~~~~~~~~SpdG~-~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS-RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSS-EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCC-EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 45799999999999 5888777 88 9999999998765321000000 00000000000000001348899
Q ss_pred EEcCCCCEEEEEECCCeEEEEEccCCC--ccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEE
Q 001343 413 AWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1096)
Q Consensus 413 ~~spd~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~ 489 (1096)
+|||||++|++++. +.|++||+.++. ... .+..|...+.+++|+|||+ .|+.++ ++.|++|| .+++....
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence 99999999999987 899999999872 233 3667888999999999999 788777 56999999 66655544
Q ss_pred eeCCCCC----------------eEEEEeeecCCCcEEEEEECCC---------------------------------eE
Q 001343 490 FEGHEAP----------------VYSICPHHKENIQFIFSTAIDG---------------------------------KI 520 (1096)
Q Consensus 490 ~~~~~~~----------------v~~~~~~~~~~~~~l~s~~~dg---------------------------------~i 520 (1096)
...+... +.+++|+| ||++|++++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp--Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAP--DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECT--TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECC--CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 4434332 36788876 778898887765 78
Q ss_pred EEEEcCC-CCeeeEEe--CCCCcEEEEEEcCCCCEEEEEeec-cCCCCeEEEEeCCCCeeeEEEcCcCcc---ceEEEEE
Q 001343 521 KAWLYDT-MGSRVDYD--APGHWCTTMLYSADGSRLFSCGTS-KDGDSFLVEWNESEGTIKRTYAGFRKK---SNGVVQF 593 (1096)
Q Consensus 521 ~iwd~~~-~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~~-~~~~~~i~iwd~~~~~~~~~~~~~~~~---~i~~~~~ 593 (1096)
.+||+.+ ++...... .+...+..++| |||+.|+++..+ ...+..|++||+.+++....+..+... .+..++|
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence 8899887 66544332 35568999999 999999977642 223678999999999888777665432 2346899
Q ss_pred eCCCCEEEEEEcCCeEEEEeCC-CCeEEEEeecCCCCCCccEE-EEeCCCCEEEEEE-CCC--cEEEEEcCCCccccccc
Q 001343 594 DTTQNHFLAVGEDSQIKFWDMD-NVNILTSTDAEGGLPNLPRL-RFSKEGNLLAVTT-ADN--GFKILANAIGLRSLRAV 668 (1096)
Q Consensus 594 ~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~ 668 (1096)
+|+|+++++++.+|.+.+|.++ .+. ...+..+.. .+..+ .|+|+++.|+..+ .++ .+++|++.........+
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~--~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l 421 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNW--SVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRL 421 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSS--CEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEEC
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecce--EEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeec
Confidence 9999988888889977777765 344 555554433 67777 5999998776554 454 89999986532333344
Q ss_pred cCCCcccccCcceeEEeecCCCeEEecCC
Q 001343 669 ENPPFEALRTPIESVALKVSASSAVSSGT 697 (1096)
Q Consensus 669 ~~~~~~~~~~~v~~~~~s~~g~~lv~~~s 697 (1096)
.. ...+..++|+|||+.++...+
T Consensus 422 ~~------~~~~~~~~~spdg~~l~~~~~ 444 (741)
T 2ecf_A 422 SK------APGMHSASFARNASVYVDSWS 444 (741)
T ss_dssp CC------SCSEEEEEECTTSSEEEEEEE
T ss_pred cc------CCCceEEEECCCCCEEEEEec
Confidence 33 123567899999999865543
No 133
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=3.7e-23 Score=255.72 Aligned_cols=321 Identities=9% Similarity=0.076 Sum_probs=227.8
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCC---CEEEEEEcCCCCEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI---SVSRVAWSPDGNYVG 422 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spd~~~l~ 422 (1096)
.+.+++|+|||+ ++++ +.||+|++||+.+++.... +.+|.. .|.+++|||||++|+
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence 467899999999 5776 6899999999999876532 444543 499999999999999
Q ss_pred EEECC---------CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeC
Q 001343 423 VAFTK---------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (1096)
Q Consensus 423 s~~~d---------g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~ 492 (1096)
+++.+ +.|.+||+.+++. +.+....+|...+..++|+|||+ .|+.++. +.|++|| .+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99874 7888999999875 32223345666699999999999 6787775 8999999 67776665555
Q ss_pred CCCCe------------------EEEEeeecCCCcEEEEEECCC----------------------------------eE
Q 001343 493 HEAPV------------------YSICPHHKENIQFIFSTAIDG----------------------------------KI 520 (1096)
Q Consensus 493 ~~~~v------------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i 520 (1096)
+...+ .+++|+| ||+.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSP--DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECT--TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECC--CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44433 6788876 778898887553 79
Q ss_pred EEEEcCCCCeeeEEeCC------CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccce----EE
Q 001343 521 KAWLYDTMGSRVDYDAP------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN----GV 590 (1096)
Q Consensus 521 ~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i----~~ 590 (1096)
++||+.+++....+..+ ...+..++|+|||+++++.......+..|++||+.+++....+..+....+ ..
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence 99999887755555543 457899999999998877654333457899999999988776654432222 26
Q ss_pred EEEeCCCCEEEEE--EcCC------eEEEEe-CCCCeE--EEEeecCCCCCCccE-EEEeCCCCEEEEEECC---CcEEE
Q 001343 591 VQFDTTQNHFLAV--GEDS------QIKFWD-MDNVNI--LTSTDAEGGLPNLPR-LRFSKEGNLLAVTTAD---NGFKI 655 (1096)
Q Consensus 591 ~~~~~~~~~l~~~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d---g~i~i 655 (1096)
++|+|+|+.|+.. ..++ .|++|| ..++.. ...+.... ..+.. ++|+|+|+.|+..+.+ +.+++
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD--WDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS--SCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCC--eEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 8999999977754 4666 577777 344441 33333221 13444 6999999999877665 78999
Q ss_pred EEcCCCcc-ccccccCCCcccccCcceeEEeecCCCeEEecCC
Q 001343 656 LANAIGLR-SLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (1096)
Q Consensus 656 wd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s 697 (1096)
|++..... ....+.... .....+..++|+|+|+.++...+
T Consensus 389 ~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 389 YSANTVGNFNRQCLSCDL--VENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp EEECSSTTCCCBCSSTTS--SSSCCCCEEEECTTSSEEEEECC
T ss_pred EEEeCCCCCCcceecccc--cCCCCeEEEEECCCCCEEEEEcc
Confidence 99865421 222222100 01233667999999999866544
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=2.9e-22 Score=227.93 Aligned_cols=278 Identities=11% Similarity=0.073 Sum_probs=210.7
Q ss_pred eeec--CCCCcceEEeec-CCCceEEEEEcCC--------------CCcEEEEEeC--C---CeEEEEecCCCCeeeccc
Q 001343 327 TWSL--DDLPRTVAVSLH-QGSTVISMDFHPS--------------HQTLLLVGSS--N---GEITLWELAMRDRLVSKP 384 (1096)
Q Consensus 327 ~~~~--~~~~~~~~~~l~-h~~~V~~v~fsp~--------------g~~llasg~~--d---g~I~iwd~~~~~~~~~~~ 384 (1096)
+|++ ..........+. |...+.++++++. +.++++++.. + +.|++||+..+.. .
T Consensus 97 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~--- 172 (415)
T 2hqs_A 97 LVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-F--- 172 (415)
T ss_dssp EEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC-E---
T ss_pred EEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC-E---
Confidence 8888 544322223444 8888999988861 4544444432 2 7999999975432 2
Q ss_pred ceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCC---eEEEEEccCCCccccceeecccccCEEEEEEec
Q 001343 385 FKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH---LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461 (1096)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~ 461 (1096)
.+.+|...|.+++|||||++|++++.++ .|++||+.+++.. .+..|.+.+.+++|+|
T Consensus 173 ----------------~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~----~l~~~~~~~~~~~~sp 232 (415)
T 2hqs_A 173 ----------------VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSP 232 (415)
T ss_dssp ----------------EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECT
T ss_pred ----------------EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE----EeecCCCcccCEEEcC
Confidence 2667889999999999999999999875 9999999988654 3667888999999999
Q ss_pred CCCcEEEE-EEeCCCc--EEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC-CC--eEEEEEcCCCCeeeEE
Q 001343 462 PNKLLCVV-TCGDDKL--IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDY 534 (1096)
Q Consensus 462 d~~~~~l~-s~s~d~~--i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~ 534 (1096)
||+ .|+ +++.|+. |++|| .+++ ...+..|...+.+++|+| +|++|++++. ++ .|.+||+.+++. ..+
T Consensus 233 dg~--~la~~~~~~g~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~sp--dg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l 306 (415)
T 2hqs_A 233 DGS--KLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFP--DSQNLAFTSDQAGRPQVYKVNINGGAP-QRI 306 (415)
T ss_dssp TSS--EEEEEECTTSSCEEEEEETTTCC-EEECCCCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCC-EEC
T ss_pred CCC--EEEEEEecCCCceEEEEECCCCC-EEeCcCCCCcccceEECC--CCCEEEEEECCCCCcEEEEEECCCCCE-EEE
Confidence 999 565 6766655 99999 5554 467888889999999977 6788888776 45 677778876653 344
Q ss_pred eCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCC---eEEE
Q 001343 535 DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKF 611 (1096)
Q Consensus 535 ~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i 611 (1096)
..+...+.+++|+|+|++|++++.+ +++..|++||+.+++.. .+..+. .+..++|+|+|+.|++++.++ .|++
T Consensus 307 ~~~~~~~~~~~~spdG~~l~~~~~~-~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~spdg~~l~~~s~~~~~~~l~~ 382 (415)
T 2hqs_A 307 TWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ-VLSSTF--LDETPSLAPNGTMVIYSSSQGMGSVLNL 382 (415)
T ss_dssp CCSSSEEEEEEECTTSSEEEEEEEC-SSCEEEEEEETTTCCEE-ECCCSS--SCEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred ecCCCcccCeEECCCCCEEEEEECc-CCceEEEEEECCCCCEE-EecCCC--CcCCeEEcCCCCEEEEEEcCCCccEEEE
Confidence 5566789999999999999988752 22468999999988774 444443 688899999999999988776 7999
Q ss_pred EeCCCCeEEEEeecCCCCCCccEEEEeCCC
Q 001343 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1096)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 641 (1096)
||+.. .....+..+.. .|.+++|+|..
T Consensus 383 ~d~~g-~~~~~l~~~~~--~v~~~~~~~~~ 409 (415)
T 2hqs_A 383 VSTDG-RFKARLPATDG--QVKFPAWSPYL 409 (415)
T ss_dssp EETTS-CCEEECCCSSS--EEEEEEECCCC
T ss_pred EECCC-CcEEEeeCCCC--CCcCCcccccc
Confidence 99874 45556665544 89999999964
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=7e-22 Score=244.95 Aligned_cols=328 Identities=10% Similarity=0.033 Sum_probs=234.3
Q ss_pred CCCEEEEEEcCCCCEEEEEEC-CC-----eEEEEEccCCCccccceeecccc------------------------cCEE
Q 001343 406 PISVSRVAWSPDGNYVGVAFT-KH-----LIQLYSYAGSNDLRQHSQIDAHV------------------------GAVN 455 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~-dg-----~i~vwd~~~~~~~~~~~~l~~h~------------------------~~v~ 455 (1096)
...|.+++|||||++|++++. |+ .|++||+.+++.... +..+. ..|.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLL---VDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEE---ECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEc---cchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 457999999999999999998 88 899999999875442 22232 3378
Q ss_pred EEEEecCCCcEEEEEEeCCCcEEEEE-cCCc--eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee
Q 001343 456 DLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV 532 (1096)
Q Consensus 456 ~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 532 (1096)
+++|+|||+ .|++++. +.|++|| .++. .+..+..|...+.+++|+| ||++|++++ ++.|++||+.+++...
T Consensus 113 ~~~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 113 DYQWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CCEECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred eeEECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC--CCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999 7888775 9999999 5552 5667778888999999977 778888887 5699999998765544
Q ss_pred EEeCCCCc----------------EEEEEEcCCCCEEEEEeeccC-----------------------------CCCeEE
Q 001343 533 DYDAPGHW----------------CTTMLYSADGSRLFSCGTSKD-----------------------------GDSFLV 567 (1096)
Q Consensus 533 ~~~~~~~~----------------i~~l~~s~~~~~l~~~~~~~~-----------------------------~~~~i~ 567 (1096)
....+... +.+++|||||++|++++.+.. ....|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 33333222 477999999999998875221 011789
Q ss_pred EEeCCC-CeeeEEEcC-cCccceEEEEEeCCCCEEEEEEc-----CCeEEEEeCCCCeEEEEeecCCCC--CCccEEEEe
Q 001343 568 EWNESE-GTIKRTYAG-FRKKSNGVVQFDTTQNHFLAVGE-----DSQIKFWDMDNVNILTSTDAEGGL--PNLPRLRFS 638 (1096)
Q Consensus 568 iwd~~~-~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~s 638 (1096)
+||+.+ ++....... .....+..++| |+|+.|++++. +..|++||+.+++....+..+... ..+..++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999988 876554433 12337888999 99999988764 568999999999887766544321 135689999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeE-EeecCCCeEEecCCCCceeEeccCCCcCCCcccC
Q 001343 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV-ALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~ 717 (1096)
|||+++++++.||.++||.+..... ...+..+. ..+..+ .|+|+|+.++..
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~-----~~v~~~~~~s~dg~~l~~~---------------------- 397 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGN-----WSVDELLAVDEKAGLAYFR---------------------- 397 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSS-----SCEEEEEEEETTTTEEEEE----------------------
T ss_pred CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecc-----eEEEeEeEEeCCCCEEEEE----------------------
Confidence 9999999999999888888753223 44444432 234455 588888766322
Q ss_pred CCCccCCCCCCccccCCCC--CccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecC----CeEEEe
Q 001343 718 VDPTSRSMDKPRTVDDVTD--KPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN----GVQKLW 791 (1096)
Q Consensus 718 ~~~~~s~d~~~l~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d----g~v~vw 791 (1096)
++.++ .+++|++.. .......+. ....+..++|+|||+.++....+ ..+.+|
T Consensus 398 --------------~~~~~~~~~~l~~~~~--~g~~~~~l~------~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~ 455 (741)
T 2ecf_A 398 --------------AGIESARESQIYAVPL--QGGQPQRLS------KAPGMHSASFARNASVYVDSWSNNSTPPQIELF 455 (741)
T ss_dssp --------------ECSSCTTCBEEEEEET--TCCCCEECC------CSCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred --------------EeCCCCceEEEEEEEc--CCCCeeecc------cCCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence 22334 788999862 122223322 24467899999999988777654 456676
Q ss_pred ec
Q 001343 792 KW 793 (1096)
Q Consensus 792 ~~ 793 (1096)
+.
T Consensus 456 ~~ 457 (741)
T 2ecf_A 456 RA 457 (741)
T ss_dssp ET
T ss_pred Ec
Confidence 65
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=7.9e-21 Score=210.21 Aligned_cols=279 Identities=10% Similarity=0.046 Sum_probs=204.8
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC-CC
Q 001343 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT-KH 428 (1096)
Q Consensus 350 v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~-dg 428 (1096)
..|.+++++++++++.++.|.+||..+++.+.. +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 456777777788999999999999999987643 23345556 9999999998777766 88
Q ss_pred eEEEEEccCCCc-cccceeecccccCEEEEEEecCCCcEEEEEEeCCC---cEEEEE-cCCceEEEeeCCCCCeEEEEee
Q 001343 429 LIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK---LIKVWE-LSGRKLFNFEGHEAPVYSICPH 503 (1096)
Q Consensus 429 ~i~vwd~~~~~~-~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~---~i~iwd-~~~~~~~~~~~~~~~v~~~~~~ 503 (1096)
.|.+||..+++. .. .+..+..+..+++|+|+++ +++++..++ .|.+|| .+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999999876 33 3555666666699999999 677555443 899999 788887777654 446899997
Q ss_pred ecCCCcEE-EEEECCCe-EEEEEcCCCCeee----EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee-
Q 001343 504 HKENIQFI-FSTAIDGK-IKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI- 576 (1096)
Q Consensus 504 ~~~~~~~l-~s~~~dg~-i~iwd~~~~~~~~----~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~- 576 (1096)
| +|+++ ++...++. |.+|+++...... ........+..++|+|+|+++++++. .++.|.+||+.+++.
T Consensus 137 p--dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 137 P--NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENI 211 (331)
T ss_dssp T--TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSC
T ss_pred C--CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCccc
Confidence 7 55544 45566688 9999998655432 22233456899999999997776653 278999999999888
Q ss_pred --eEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeE--EEEeecC--CCCC---CccEEEEeCCCCEEEE
Q 001343 577 --KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI--LTSTDAE--GGLP---NLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 577 --~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~--~~~~---~v~~~~~s~~~~~l~~ 646 (1096)
+..+.... .+..++|+|+|++++++. .++.|.+||..+++. +..+... .... ....++|+|++++|++
T Consensus 212 ~~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 289 (331)
T 3u4y_A 212 TLLNAVGTNN--LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFI 289 (331)
T ss_dssp EEEEEEECSS--CCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEE
T ss_pred ceeeeccCCC--CCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEE
Confidence 77776542 456799999999877665 577899999999887 4443322 1111 2245899999998876
Q ss_pred EEC-CCcEEEEEcCCC
Q 001343 647 TTA-DNGFKILANAIG 661 (1096)
Q Consensus 647 ~~~-dg~i~iwd~~~~ 661 (1096)
++. ++.|.+||+...
T Consensus 290 ~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 290 SANISRELKVFTISGK 305 (331)
T ss_dssp EETTTTEEEEEETTSC
T ss_pred ecCCCCcEEEEEecCC
Confidence 665 569999999765
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=2.9e-20 Score=207.71 Aligned_cols=273 Identities=11% Similarity=0.096 Sum_probs=213.7
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeC-------CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSS-------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~-------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1096)
.....+..++|+|+|++ +++++. ++.|.+||..+++.+.. +. ....+..++|
T Consensus 38 ~~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-------------------~~-~~~~~~~~~~ 96 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENA-LWLATSQSRKLDKGGVVYRLDPVTLEVTQA-------------------IH-NDLKPFGATI 96 (353)
T ss_dssp EEESSEEEEEEETTTTE-EEEEECCCTTTEESEEEEEECTTTCCEEEE-------------------EE-ESSCCCSEEE
T ss_pred hhccCccceEECCCCCE-EEEEcCCCcCCCCCccEEEEcCCCCeEEEE-------------------Ee-cCCCcceEEE
Confidence 34567899999999995 455442 67899999999887643 11 2234678999
Q ss_pred cCCCCEEEEE-ECCCeEEEEEccCCCccccceeeccccc---------CEEEEEEecCCCcEEEEEEe--CCCcEEEEE-
Q 001343 415 SPDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVG---------AVNDLAFAYPNKLLCVVTCG--DDKLIKVWE- 481 (1096)
Q Consensus 415 spd~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~l~~h~~---------~v~~l~~s~d~~~~~l~s~s--~d~~i~iwd- 481 (1096)
+|+|++++++ ..++.|.+||..+++.... +..+.. .+.+++|+|+++ .+++++ .++.|.+||
T Consensus 97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~i~~~d~ 171 (353)
T 3vgz_A 97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKGR---LVLDDRKRTEEVRPLQPRELVADDATN--TVYISGIGKESVIWVVDG 171 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEEE---EESCCCCCCSSCCCCEEEEEEEETTTT--EEEEEEESSSCEEEEEET
T ss_pred CCCCCEEEEEecCCCEEEEEeCCCCeeEEE---EecCCCccccccCCCCCceEEECCCCC--EEEEEecCCCceEEEEcC
Confidence 9999976655 4478999999999876653 333322 278999999999 444443 588999999
Q ss_pred cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC----CCCcEEEEEEcCCCCEEEEEe
Q 001343 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA----PGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 482 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
.+++.+..+..+...+.+++|++ +++++++++.++.|.+||..+++....+.. +...+..++|+|++++++++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 249 (353)
T 3vgz_A 172 GNIKLKTAIQNTGKMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITD 249 (353)
T ss_dssp TTTEEEEEECCCCTTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEE
T ss_pred CCCceEEEecCCCCccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEe
Confidence 88888888876666688888876 668899999999999999998887766654 444688899999999888776
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEE
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1096)
. .++.|.+||..+++.+..+..... ..++|+|++++++++. .++.|.+||..+++.+..+.... .+.+++
T Consensus 250 ~---~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~ 320 (353)
T 3vgz_A 250 S---KAAEVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLA 320 (353)
T ss_dssp S---SSSEEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEE
T ss_pred C---CCCEEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEE
Confidence 4 268999999999999888876432 3589999999777666 68999999999999988887643 578999
Q ss_pred EeCCCCEEEEEECCC
Q 001343 637 FSKEGNLLAVTTADN 651 (1096)
Q Consensus 637 ~s~~~~~l~~~~~dg 651 (1096)
|+|+|++++++..++
T Consensus 321 ~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 321 LSADGKTLYVSVKQK 335 (353)
T ss_dssp ECTTSCEEEEEEECC
T ss_pred EcCCCCEEEEEEccc
Confidence 999999887776653
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=1.6e-20 Score=231.20 Aligned_cols=237 Identities=10% Similarity=-0.002 Sum_probs=166.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEccCCCcc-ccceeecccc-----------------cCEEEEEEecCCCcEEEEE
Q 001343 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL-RQHSQIDAHV-----------------GAVNDLAFAYPNKLLCVVT 470 (1096)
Q Consensus 409 V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~l~~h~-----------------~~v~~l~~s~d~~~~~l~s 470 (1096)
+..+.|+ |+.+++++.++ | +||+.+++.+ .. +..|. ..|.+++|+|| + .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence 4557888 66777777787 8 9999998763 32 22232 56999999999 5 4444
Q ss_pred EeCCCcEEEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC-----CCeeeEEeCCCCc-----
Q 001343 471 CGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-----MGSRVDYDAPGHW----- 540 (1096)
Q Consensus 471 ~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~----- 540 (1096)
+. |+.|++||..+.....+..+...+.+++|+| ||+.|+++ .++.|++||+.+ ++.......+...
T Consensus 98 ~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 173 (706)
T 2z3z_A 98 FT-QGGLVGFDMLARKVTYLFDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ 173 (706)
T ss_dssp EE-TTEEEEEETTTTEEEEEECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred EE-CCEEEEEECCCCceEEccCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence 43 6999999943334455566777888999977 67888884 689999999988 6554433333222
Q ss_pred ---------EEEEEEcCCCCEEEEEeecc-----------------------------CCCCeEEEEeCCCCeeeEEEcC
Q 001343 541 ---------CTTMLYSADGSRLFSCGTSK-----------------------------DGDSFLVEWNESEGTIKRTYAG 582 (1096)
Q Consensus 541 ---------i~~l~~s~~~~~l~~~~~~~-----------------------------~~~~~i~iwd~~~~~~~~~~~~ 582 (1096)
+.++.|+|||++|++++.+. ..+..|++||+.+++.......
T Consensus 174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 253 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG 253 (706)
T ss_dssp CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence 47899999999999887321 1357899999999887655432
Q ss_pred -cCccceEEEEEeCCCCEEEEEEcCC-----eEEEEeCCCCeEEEEee-cCC--CCCCccEEEEeC--CCCEEEEEECCC
Q 001343 583 -FRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNILTSTD-AEG--GLPNLPRLRFSK--EGNLLAVTTADN 651 (1096)
Q Consensus 583 -~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~-~~~--~~~~v~~~~~s~--~~~~l~~~~~dg 651 (1096)
.....+..++|+|+|+.|++++.++ .|++||+.+++....+. ... ....+..++|+| +|++++++..|+
T Consensus 254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 1223688899999999999988765 89999999983333332 111 111346789999 999999888899
Q ss_pred cEEEEEcC
Q 001343 652 GFKILANA 659 (1096)
Q Consensus 652 ~i~iwd~~ 659 (1096)
.+++|.+.
T Consensus 334 ~~~l~~~~ 341 (706)
T 2z3z_A 334 WNHLYLYD 341 (706)
T ss_dssp SCEEEEEE
T ss_pred ccEEEEEE
Confidence 88888764
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=1.4e-20 Score=232.63 Aligned_cols=233 Identities=11% Similarity=-0.003 Sum_probs=173.4
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeeccccc---CEEEEEEecCCCcEEEEEEeCC---------C
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGDD---------K 475 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~---~v~~l~~s~d~~~~~l~s~s~d---------~ 475 (1096)
.+.+++|+|||+++++ +.||+|++||+.+++... .+.+|.. .|.+++|+|||+ +|++++.+ +
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~---~~~~~~~~~~~v~~~~~SpDg~--~l~~~~~~~~~~~~~~~~ 91 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTV---LIEGKKIESLRAIRYEISPDRE--YALFSYNVEPIYQHSYTG 91 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEE---EECTTTTTTTTCSEEEECTTSS--EEEEEESCCCCSSSCCCS
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEE---EeccccccccccceEEECCCCC--EEEEEecCccceeeccee
Confidence 4678999999998876 789999999999987654 3555554 499999999999 78888764 7
Q ss_pred cEEEEE-cCCceEEEee---CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCc-----------
Q 001343 476 LIKVWE-LSGRKLFNFE---GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW----------- 540 (1096)
Q Consensus 476 ~i~iwd-~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------- 540 (1096)
.+++|| .+++. ..+. +|...+..++|+| ||+.|+.++. +.|++||+.+++.......+...
T Consensus 92 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SP--dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~ 167 (723)
T 1xfd_A 92 YYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGP--KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLY 167 (723)
T ss_dssp EEEEEESSSCCC-EECCCTTCCSCCCSBCCBCS--STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHH
T ss_pred eEEEEECCCCce-EeccCCccccccccccEECC--CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeE
Confidence 888999 66655 3443 4455588899977 6788888876 89999999887766555443332
Q ss_pred -------EEEEEEcCCCCEEEEEeeccC------------------------------CCCeEEEEeCCCCeeeEEEcCc
Q 001343 541 -------CTTMLYSADGSRLFSCGTSKD------------------------------GDSFLVEWNESEGTIKRTYAGF 583 (1096)
Q Consensus 541 -------i~~l~~s~~~~~l~~~~~~~~------------------------------~~~~i~iwd~~~~~~~~~~~~~ 583 (1096)
+.+++|||||+.|++++.+.. .+..|++||+.+++....+..+
T Consensus 168 ~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~ 247 (723)
T 1xfd_A 168 EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP 247 (723)
T ss_dssp HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC
T ss_pred EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC
Confidence 278999999999998875320 0227999999998876666654
Q ss_pred C-----ccceEEEEEeCCCCEEEEEEc----CCeEEEEeCCCCeEEEEeecCCCCCCc----cEEEEeCCCCEEEEE--E
Q 001343 584 R-----KKSNGVVQFDTTQNHFLAVGE----DSQIKFWDMDNVNILTSTDAEGGLPNL----PRLRFSKEGNLLAVT--T 648 (1096)
Q Consensus 584 ~-----~~~i~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~~~--~ 648 (1096)
. ...+..++|+|||+++++... +..|++||+.+++....+..+.. ..+ ..++|+|||+.|+.. .
T Consensus 248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~ 326 (723)
T 1xfd_A 248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESE-AWLHRQNEEPVFSKDGRKFFFIRAI 326 (723)
T ss_dssp CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECS-SCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccC-CEEeccCCCceEcCCCCeEEEEEec
Confidence 2 336788999999998877653 35799999999887766543211 122 378999999977754 4
Q ss_pred CCC
Q 001343 649 ADN 651 (1096)
Q Consensus 649 ~dg 651 (1096)
.++
T Consensus 327 ~~~ 329 (723)
T 1xfd_A 327 PQG 329 (723)
T ss_dssp CCS
T ss_pred ccC
Confidence 566
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=1.2e-20 Score=204.93 Aligned_cols=257 Identities=17% Similarity=0.162 Sum_probs=192.1
Q ss_pred EEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccC-CCc
Q 001343 362 VGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG-SND 440 (1096)
Q Consensus 362 sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~-~~~ 440 (1096)
.++.|+.|.+||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 34578999999999887543 445788999999999999999987 78999999998 765
Q ss_pred cccceeeccc-ccCEEEEEEecCCCcEEEEEEe--CCCcEEEEE--cCCceEEEeeCCCCCeEEEEeeecCCCcEEE-EE
Q 001343 441 LRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIF-ST 514 (1096)
Q Consensus 441 ~~~~~~l~~h-~~~v~~l~~s~d~~~~~l~s~s--~d~~i~iwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~ 514 (1096)
.. ...+| ...+.+++|+|+++ .|++++ .++.+.||. ..+.....+..+. .+..++|+| +++.|+ ++
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~sp--dg~~l~~~~ 147 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSP--DGKSFTYCG 147 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECT--TSSEEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECC--CCCEEEEEE
Confidence 44 23344 47889999999999 788887 345556665 4444555555444 488888876 556666 78
Q ss_pred ECCCeEEEEEcCCC-CeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC-CCeeeEEEcCcCccceEEEE
Q 001343 515 AIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQ 592 (1096)
Q Consensus 515 ~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~i~~~~ 592 (1096)
+.++.+++|+++.. .....+..+...+.+++|+|+++.+++++. .++.+.+|++. .+.....+..+.. .+..++
T Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~ 223 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS---RTGQMQIWRVRVDGSSVERITDSAY-GDWFPH 223 (297)
T ss_dssp EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC---TTSSCEEEEEETTSSCEEECCCCSE-EEEEEE
T ss_pred CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec---CCCCccEEEECCCCCCcEEEecCCc-ccCCeE
Confidence 89999999997543 334455566678999999999998887653 15667777765 4555666666654 788899
Q ss_pred EeCCCCEEEEEEcC-----------CeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCC
Q 001343 593 FDTTQNHFLAVGED-----------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1096)
Q Consensus 593 ~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 651 (1096)
|+|++++|++++.+ +.|++||+.+++.........+...+..++|+|+++.|++++.+.
T Consensus 224 ~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 224 PSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999888765 569999999887644443222233789999999999998887653
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=1.4e-20 Score=231.83 Aligned_cols=320 Identities=9% Similarity=0.052 Sum_probs=208.1
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCee-ecccceeecccccCcc--ccccccccCCCCEEEEEEcCCCCEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRL-VSKPFKIWDMAACSLP--FQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
.+..+.|+ |.. +++++.|+ | +||+.+++.+ .. +.+....... ........+...|.+++|||| ++++
T Consensus 27 ~~~~~~w~--g~~-~~~~~~~~-i-~~d~~tg~~~~~~----l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~ 96 (706)
T 2z3z_A 27 YVVGLQWM--GDN-YVFIEGDD-L-VFNKANGKSAQTT----RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVV 96 (706)
T ss_dssp -CTTCEEE--TTE-EEEEETTE-E-EEEC-------CE----EEEHHHHHTTC-----------CCCEEEEETTT-TEEE
T ss_pred cCCCCcCc--CCe-EEEEeCCc-E-EEECCCCcEeeEE----eechhHhhhhccchhccccccccCceeEEECCC-CeEE
Confidence 35567787 553 55566677 8 9999998762 11 0000000000 000000112357999999999 6666
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cC-----CceEEEeeCCCCC
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS-----GRKLFNFEGHEAP 496 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~-----~~~~~~~~~~~~~ 496 (1096)
.+. ++.|++||+.+++... +..+...+.+++|+|||+ .|+++ .|+.|++|| .+ ++.......+...
T Consensus 97 ~~~-~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~SpdG~--~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~ 168 (706)
T 2z3z_A 97 LFT-QGGLVGFDMLARKVTY----LFDTNEETASLDFSPVGD--RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTET 168 (706)
T ss_dssp EEE-TTEEEEEETTTTEEEE----EECCTTCCTTCEECTTSS--EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTT
T ss_pred EEE-CCEEEEEECCCCceEE----ccCCcccccCCcCCCCCC--EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCC
Confidence 664 5999999998875433 455777899999999999 67774 689999999 66 6665544444433
Q ss_pred --------------eEEEEeeecCCCcEEEEEE---------------------------------CCCeEEEEEcCCCC
Q 001343 497 --------------VYSICPHHKENIQFIFSTA---------------------------------IDGKIKAWLYDTMG 529 (1096)
Q Consensus 497 --------------v~~~~~~~~~~~~~l~s~~---------------------------------~dg~i~iwd~~~~~ 529 (1096)
+.+++|+| ||++|++++ .++.|.+||+.+++
T Consensus 169 ~~~g~~~~~ee~~~~~~~~~Sp--Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~ 246 (706)
T 2z3z_A 169 LVYGQAVHQREFGIEKGTFWSP--KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK 246 (706)
T ss_dssp EEESSCCGGGCTTCCCSEEECT--TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE
T ss_pred eEcccchhhhhcCCCceEEECC--CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc
Confidence 47888876 778999887 45789999998776
Q ss_pred eeeEEe--CCCCcEEEEEEcCCCCEEEEEeecc-CCCCeEEEEeCCCCeeeEEEc-CcCcc---ceEEEEEeC--CCCEE
Q 001343 530 SRVDYD--APGHWCTTMLYSADGSRLFSCGTSK-DGDSFLVEWNESEGTIKRTYA-GFRKK---SNGVVQFDT--TQNHF 600 (1096)
Q Consensus 530 ~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~~~-~~~~~---~i~~~~~~~--~~~~l 600 (1096)
...... .+...+.+++|+|||+.|++++.+. .....|++||+.+++....+. ..... .+..+.|+| +|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l 326 (706)
T 2z3z_A 247 TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFI 326 (706)
T ss_dssp EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEE
T ss_pred eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEE
Confidence 544332 3456799999999999999877521 112489999999984333332 22211 234578999 99999
Q ss_pred EEEEcCCeEEEEeCC-CCeEEEEeecCCCCCCccE-EEEeCCCCEEEEEECC-C----cEEEEEcCCCccccccccCCCc
Q 001343 601 LAVGEDSQIKFWDMD-NVNILTSTDAEGGLPNLPR-LRFSKEGNLLAVTTAD-N----GFKILANAIGLRSLRAVENPPF 673 (1096)
Q Consensus 601 ~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d-g----~i~iwd~~~~~~~~~~~~~~~~ 673 (1096)
++++.++.+++|.++ ++..+..+..+.. .+.. ++|+|+++.|+.++.+ + .|..|++.++. ...+. +
T Consensus 327 ~~~~~~g~~~l~~~~~~~~~~~~l~~~~~--~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~--~~~l~-~-- 399 (706)
T 2z3z_A 327 WQSRRDGWNHLYLYDTTGRLIRQVTKGEW--EVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK--TKDLT-P-- 399 (706)
T ss_dssp EEECTTSSCEEEEEETTSCEEEECCCSSS--CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC--CEESC-C--
T ss_pred EEEccCCccEEEEEECCCCEEEecCCCCe--EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC--ceecc-C--
Confidence 989899999999876 5666666655432 5666 7999999888766654 3 56666766552 22222 1
Q ss_pred ccccCcceeEEeecCCCeEEec
Q 001343 674 EALRTPIESVALKVSASSAVSS 695 (1096)
Q Consensus 674 ~~~~~~v~~~~~s~~g~~lv~~ 695 (1096)
...+..++|+|+|++++..
T Consensus 400 ---~~~~~~~~~spdg~~l~~~ 418 (706)
T 2z3z_A 400 ---ESGMHRTQLSPDGSAIIDI 418 (706)
T ss_dssp ---SSSEEEEEECTTSSEEEEE
T ss_pred ---CCceEEEEECCCCCEEEEE
Confidence 2236678999999887544
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.86 E-value=1.7e-19 Score=200.60 Aligned_cols=298 Identities=14% Similarity=0.140 Sum_probs=200.9
Q ss_pred CcEEEEEeCCCeEEEEecCC-CCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECC-CeEEEEE
Q 001343 357 QTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK-HLIQLYS 434 (1096)
Q Consensus 357 ~~llasg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d-g~i~vwd 434 (1096)
++++++++.|+.|.+|++.. ++.... ....|...+.+++|+|+|++|++++.+ +.|.+|+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~ 66 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLT------------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 66 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEE------------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEe------------------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEE
Confidence 34566668899999999953 332110 022366789999999999999999887 9999999
Q ss_pred cc--CCCccccceeecccccCEEEEEEecCCCcEEEEEEe-CCCcEEEEE-cCCc---eEEEeeCCCCCeEEEEeeecCC
Q 001343 435 YA--GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-LSGR---KLFNFEGHEAPVYSICPHHKEN 507 (1096)
Q Consensus 435 ~~--~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~d~~i~iwd-~~~~---~~~~~~~~~~~v~~~~~~~~~~ 507 (1096)
++ +++. .....+..+. .+..++|+|+++ .|++++ .++.|.+|| .++. .+..+.. ...+.+++|+| +
T Consensus 67 ~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~--d 139 (343)
T 1ri6_A 67 IAPDDGAL-TFAAESALPG-SLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISP--D 139 (343)
T ss_dssp ECTTTCCE-EEEEEEECSS-CCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECT--T
T ss_pred ecCCCCce-eeccccccCC-CCcEEEEcCCCC--EEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECC--C
Confidence 98 5442 2222343333 789999999999 555554 588999999 4332 3334443 34588888876 6
Q ss_pred CcEEEEEE-CCCeEEEEEcCC-CCeee----EEeC-CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC--CCee--
Q 001343 508 IQFIFSTA-IDGKIKAWLYDT-MGSRV----DYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES--EGTI-- 576 (1096)
Q Consensus 508 ~~~l~s~~-~dg~i~iwd~~~-~~~~~----~~~~-~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~--~~~~-- 576 (1096)
++++++++ .++.|++||+.+ +.... .... ....+..++|+|+++++++++. .++.+.+|++. +++.
T Consensus 140 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 140 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEE
T ss_pred CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEE
Confidence 67777777 899999999987 43322 2222 3447889999999998876652 27899999995 3433
Q ss_pred eEEEcCcC-----ccceEEEEEeCCCCEEEEEE-cCCeEEEEeCC--CC--eEEEEeecCCCCCCccEEEEeCCCCEEEE
Q 001343 577 KRTYAGFR-----KKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMD--NV--NILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 577 ~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 646 (1096)
...+.... ...+..++|+|++++++++. .++.|.+|++. ++ +.+..+.... .+..++|+|++++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIA 293 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEE
Confidence 23332111 12455799999999887655 78999999998 33 3444444332 4789999999998888
Q ss_pred EE-CCCcEEEEEcC--CCc-cccccccCCCcccccCcceeEEeecCCCe
Q 001343 647 TT-ADNGFKILANA--IGL-RSLRAVENPPFEALRTPIESVALKVSASS 691 (1096)
Q Consensus 647 ~~-~dg~i~iwd~~--~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 691 (1096)
++ .++.|.+|++. ++. +.+..+.. ...+..++|.++.+.
T Consensus 294 ~~~~~~~v~v~~~d~~~g~~~~~~~~~~------g~~p~~i~~~~~~~~ 336 (343)
T 1ri6_A 294 AGQKSHHISVYEIVGEQGLLHEKGRYAV------GQGPMWVVVNAHEGG 336 (343)
T ss_dssp ECTTTCEEEEEEEETTTTEEEEEEEEEC------SSSCCEEEEEEEC--
T ss_pred ecCCCCeEEEEEEcCCCceeeEcccccc------CCCCeeEEEEcccCC
Confidence 88 58999999654 441 12222221 123456777766543
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=9.8e-19 Score=193.30 Aligned_cols=275 Identities=11% Similarity=0.067 Sum_probs=198.9
Q ss_pred CcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee-eEEEcCcCcc
Q 001343 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI-KRTYAGFRKK 586 (1096)
Q Consensus 508 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~ 586 (1096)
+..+++++.++.|.+||..+++.......+...+ .++|+|+|+++++++. +++.|++||..+++. ...+..+..
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~- 84 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSD---FCQTLVQIETQLEPPKVVAIQEGQS- 84 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEES---TTCEEEEEECSSSSCEEEEEEECSS-
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeC---CCCeEEEEECCCCceeEEecccCCC-
Confidence 3567888899999999999998887777666667 9999999998877764 367999999999987 666665544
Q ss_pred ceEEEEEeCCCCEEEEEEcCC---eEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEE-EECCCc-EEEEEcCCC
Q 001343 587 SNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV-TTADNG-FKILANAIG 661 (1096)
Q Consensus 587 ~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~-i~iwd~~~~ 661 (1096)
+..+++|+|++++++++..++ .|.+||+.+++.+..+.... ...+++|+|+|+++++ ...++. |.+|++...
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~ 161 (331)
T 3u4y_A 85 SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY---DAVGIAISPNGNGLILIDRSSANTVRRFKIDAD 161 (331)
T ss_dssp CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT---TEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC---CccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence 444489999999999655553 89999999999888876543 4689999999985554 456688 999998643
Q ss_pred ccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccce
Q 001343 662 LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPW 741 (1096)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw 741 (1096)
... .
T Consensus 162 g~~----------------------------------------------------------------------------~ 165 (331)
T 3u4y_A 162 GVL----------------------------------------------------------------------------F 165 (331)
T ss_dssp CCE----------------------------------------------------------------------------E
T ss_pred CcE----------------------------------------------------------------------------e
Confidence 100 0
Q ss_pred eeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEee-cCCeEEEeeccCCccCCCCceeeecCccccccCcccc
Q 001343 742 QLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL 820 (1096)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~ 820 (1096)
+. . ...+. ....+..++|+|+|+++++++ .++.|.+|++.. ++.
T Consensus 166 ~~------~-~~~~~------~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~----------------------~~~ 210 (331)
T 3u4y_A 166 DT------G-QEFIS------GGTRPFNITFTPDGNFAFVANLIGNSIGILETQN----------------------PEN 210 (331)
T ss_dssp EE------E-EEEEC------SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS----------------------TTS
T ss_pred ec------C-Ccccc------CCCCccceEECCCCCEEEEEeCCCCeEEEEECCC----------------------Ccc
Confidence 00 0 00000 334578899999999776665 478999998643 221
Q ss_pred ---ccccccCCCcCCCeeeeeecCCCcEEEEec--CCeEEEEEcccceE--EEeecCC----CC---CeeEEEEecCCCc
Q 001343 821 ---MANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKV--MTTFMSP----PP---ASTFLAFHPQDNN 886 (1096)
Q Consensus 821 ---~~~~~~g~~~~~~v~~l~~s~dg~~la~~~--dg~v~iwd~~~~~~--~~~~~~h----~~---~i~~l~~s~~d~~ 886 (1096)
+. .+. ....+..++|+|||++|+++. ++.|.+||+.+++. +..+..+ .. ....++|+| |++
T Consensus 211 ~~~~~-~~~---~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~ 285 (331)
T 3u4y_A 211 ITLLN-AVG---TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK-TET 285 (331)
T ss_dssp CEEEE-EEE---CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT-TSS
T ss_pred cceee-ecc---CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECC-CCC
Confidence 11 122 235677899999999777665 47799999998877 4443322 22 234689999 888
Q ss_pred EEEEee-CCCeEEEEeeccce
Q 001343 887 IIAIGT-EDSTIHIYNVRVDE 906 (1096)
Q Consensus 887 ~l~s~~-~dg~i~iw~~~~~~ 906 (1096)
+|++++ .++.|.+||+....
T Consensus 286 ~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 286 KLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEEETTTTEEEEEETTSCE
T ss_pred EEEEecCCCCcEEEEEecCCc
Confidence 776554 56799999998765
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.85 E-value=9.8e-19 Score=195.31 Aligned_cols=268 Identities=12% Similarity=0.101 Sum_probs=209.2
Q ss_pred CCCEEEEEEcCCCCEEEEEEC-------CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEE
Q 001343 406 PISVSRVAWSPDGNYVGVAFT-------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~ 478 (1096)
...+..++|+|+|++|++++. ++.|.+||..+++.... +. ....+..++|+|+++. +++++..++.|.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~-~~~~~~~~~~s~dg~~-l~v~~~~~~~v~ 114 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA---IH-NDLKPFGATINNTTQT-LWFGNTVNSAVT 114 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE---EE-ESSCCCSEEEETTTTE-EEEEETTTTEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE---Ee-cCCCcceEEECCCCCE-EEEEecCCCEEE
Confidence 346889999999999988874 56899999999876653 22 2345788999999984 455666689999
Q ss_pred EEE-cCCceEEEeeCCCCC---------eEEEEeeecCCCcEEEEEE--CCCeEEEEEcCCCCeeeEEeCCCCcEEEEEE
Q 001343 479 VWE-LSGRKLFNFEGHEAP---------VYSICPHHKENIQFIFSTA--IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLY 546 (1096)
Q Consensus 479 iwd-~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~ 546 (1096)
+|| .+++.+..+..+... +.+++|++ +++++++++ .++.|.+||..+.+....+..+...+..++|
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 192 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL 192 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence 999 888888887765432 67888877 556666665 4889999999988887777656667889999
Q ss_pred cCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC---ccceEEEEEeCCCCEEEEEEc-CCeEEEEeCCCCeEEEE
Q 001343 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR---KKSNGVVQFDTTQNHFLAVGE-DSQIKFWDMDNVNILTS 622 (1096)
Q Consensus 547 s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~ 622 (1096)
+|+|++++++.. ++.|.+||..+++....+.... ...+..++|+|+++.+++++. ++.|.+||..+++.+..
T Consensus 193 s~dg~~l~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 268 (353)
T 3vgz_A 193 DSEGKRLYTTNA----DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK 268 (353)
T ss_dssp ETTTTEEEEECT----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred CCCCCEEEEEcC----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 999999998875 8899999999999988876521 225677999999998877765 58999999999999888
Q ss_pred eecCCCCCCccEEEEeCCCCEEEEEE-CCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEec
Q 001343 623 TDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1096)
Q Consensus 623 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~ 695 (1096)
+.... ...++|+|+++.++++. .++.|.+||..++ +....+... ..+..++|+|+|+.++.+
T Consensus 269 ~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-~~~~~~~~~------~~~~~~~~s~dg~~l~v~ 331 (353)
T 3vgz_A 269 VAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY-KVVKTFDTP------THPNSLALSADGKTLYVS 331 (353)
T ss_dssp EECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT-EEEEEEECC------SEEEEEEECTTSCEEEEE
T ss_pred EEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC-eEEEEEecC------CCCCeEEEcCCCCEEEEE
Confidence 87543 26799999999766665 6899999999887 444444332 246789999999976433
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.85 E-value=6.4e-19 Score=195.86 Aligned_cols=284 Identities=12% Similarity=0.181 Sum_probs=193.4
Q ss_pred eeecCC-CCcceEEeecCCCceEEEEEcCCCCcEEEEEeCC-CeEEEEecC--CCCeeecccceeecccccCcccccccc
Q 001343 327 TWSLDD-LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN-GEITLWELA--MRDRLVSKPFKIWDMAACSLPFQASIF 402 (1096)
Q Consensus 327 ~~~~~~-~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~d-g~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1096)
+|+++. .....+..+.|...+.+++|+|+|++ |++++.+ +.|.+|++. +++..... .+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~~~~~v~~~~~~~~~~~~~~~~-----------------~~ 80 (343)
T 1ri6_A 19 VWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRY-LYVGVRPEFRVLAYRIAPDDGALTFAA-----------------ES 80 (343)
T ss_dssp EEEECTTSCEEEEEEEECSSCCCCEEECTTSSE-EEEEETTTTEEEEEEECTTTCCEEEEE-----------------EE
T ss_pred EEEECCCCcEEEeeeEecCCCCceEEECCCCCE-EEEeecCCCeEEEEEecCCCCceeecc-----------------cc
Confidence 888864 22345566778899999999999995 6666665 999999997 55532210 12
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEEC-CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe-CCCcEEEE
Q 001343 403 KDVPISVSRVAWSPDGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVW 480 (1096)
Q Consensus 403 ~~h~~~V~~l~~spd~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~d~~i~iw 480 (1096)
..+. .+.+++|+|+|++|++++. ++.|.+||+..+........+. ....+.+++|+|+++ .+++++ .++.|++|
T Consensus 81 ~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~--~l~~~~~~~~~v~~~ 156 (343)
T 1ri6_A 81 ALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNR--TLWVPALKQDRICLF 156 (343)
T ss_dssp ECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSS--EEEEEEGGGTEEEEE
T ss_pred ccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCC--EEEEecCCCCEEEEE
Confidence 2223 7889999999998877765 7899999995433222222333 334689999999999 566665 89999999
Q ss_pred E-cC-CceEE----EeeC-CCCCeEEEEeeecCCCcEEEEE-ECCCeEEEEEcCC--CCee--eEEe-CC-----CCcEE
Q 001343 481 E-LS-GRKLF----NFEG-HEAPVYSICPHHKENIQFIFST-AIDGKIKAWLYDT--MGSR--VDYD-AP-----GHWCT 542 (1096)
Q Consensus 481 d-~~-~~~~~----~~~~-~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~--~~~~--~~~~-~~-----~~~i~ 542 (1096)
| .+ ++... .+.. ....+..++|+| ++.+++++ ..++.|.+|+++. +... .... .. ...+.
T Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
T 1ri6_A 157 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP--NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAA 234 (343)
T ss_dssp EECTTSCEEEEEEEEEECSTTCCEEEEEECT--TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEE
T ss_pred EecCCCceeeecccccccCCCCCcceEEECC--CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCcc
Confidence 9 55 54432 2232 344688899976 56766555 4889999999964 2221 1221 11 23577
Q ss_pred EEEEcCCCCEEEEEeeccCCCCeEEEEeCC--C--CeeeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeC--C
Q 001343 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNES--E--GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDM--D 615 (1096)
Q Consensus 543 ~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~--~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~--~ 615 (1096)
.++|+|+|++++++.. .++.|.+||+. + .+.+..+..+. .+..++|+|+++++++++ .++.|.+|++ .
T Consensus 235 ~i~~s~dg~~l~v~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~ 309 (343)
T 1ri6_A 235 DIHITPDGRHLYACDR---TASLITVFSVSEDGSVLSKEGFQPTET--QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE 309 (343)
T ss_dssp EEEECTTSSEEEEEET---TTTEEEEEEECTTSCCEEEEEEEECSS--SCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred ceEECCCCCEEEEEec---CCCEEEEEEEcCCCCceEEeeeecCCC--ccceEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 8999999998886542 37899999998 3 34455555443 366799999999988887 6899999954 4
Q ss_pred CCeE--EEEeecCCCCCCccEEEEeCCCC
Q 001343 616 NVNI--LTSTDAEGGLPNLPRLRFSKEGN 642 (1096)
Q Consensus 616 ~~~~--~~~~~~~~~~~~v~~~~~s~~~~ 642 (1096)
+++. +..+... ....+++|.++.+
T Consensus 310 ~g~~~~~~~~~~g---~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 310 QGLLHEKGRYAVG---QGPMWVVVNAHEG 335 (343)
T ss_dssp TTEEEEEEEEECS---SSCCEEEEEEEC-
T ss_pred CceeeEccccccC---CCCeeEEEEcccC
Confidence 6644 3333332 2567888877543
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.85 E-value=1.9e-19 Score=199.59 Aligned_cols=267 Identities=7% Similarity=-0.001 Sum_probs=200.0
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCC-CEEEEEEcCCCCEEEE-EECCCeEEEEEcc
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI-SVSRVAWSPDGNYVGV-AFTKHLIQLYSYA 436 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~spd~~~l~s-~~~dg~i~vwd~~ 436 (1096)
++++++.++.|.+||+.+++.+... ..++.. .+.+++|+|||+++++ +..++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~------------------~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVI------------------TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEE------------------ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEE------------------EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 6889999999999999998776431 111222 4788999999987755 4557899999999
Q ss_pred CCCccccceeecc---cccCEEEEEEecCCCcEEEEEEe------------CCCcEEEEE-cCCceEEEeeCCCCCeEEE
Q 001343 437 GSNDLRQHSQIDA---HVGAVNDLAFAYPNKLLCVVTCG------------DDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1096)
Q Consensus 437 ~~~~~~~~~~l~~---h~~~v~~l~~s~d~~~~~l~s~s------------~d~~i~iwd-~~~~~~~~~~~~~~~v~~~ 500 (1096)
+++....+. ... |...+.+++|+|+|+ .+++++ .++.|.+|| .+++.+..+.. ...+.++
T Consensus 65 ~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRID-LSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEEE-CCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeEE-cCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 987665321 111 233677899999999 666665 579999999 77777777764 4457788
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCC----------------
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS---------------- 564 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~---------------- 564 (1096)
+|+| ++++|+++ ++.|.+||+.+++....+..+.. ...+.|+|+++.++..+.. ++
T Consensus 141 ~~s~--dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~---~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 141 AWAR--DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHES---SGVMATPFYTARKDIDPA 212 (337)
T ss_dssp EECT--TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTT---TTEEEEEEEEEBTTSCTT
T ss_pred EECC--CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccC---CCceeeeeeccccccccc
Confidence 8866 66777777 68999999998877666654431 1123788999877654321 11
Q ss_pred -------eEEEEeCCCCeeeE-EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEE
Q 001343 565 -------FLVEWNESEGTIKR-TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1096)
Q Consensus 565 -------~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 636 (1096)
.|.+||+.+++... .+..+.. .+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~ 286 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMAMREVRIMDV-FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVN 286 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECSS-CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEE
T ss_pred cccccccceEEEeCCCCCceEeecCCCCC-ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEE
Confidence 57899999988752 2223332 56779999999999888 6899999999999888877543 578999
Q ss_pred EeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 637 FSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 637 ~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
|+|+|++|++++.++.|.+||+.++
T Consensus 287 ~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 287 VSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp ECTTSCEEEEESBSSEEEEEETTTC
T ss_pred ECCCCCEEEEEcCCCcEEEEECcCC
Confidence 9999999999999999999999887
No 147
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=2.3e-19 Score=194.67 Aligned_cols=248 Identities=13% Similarity=0.093 Sum_probs=185.3
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCC-CCeeecccceeecccccCccccccccccC
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (1096)
+|++. .++......|...|.+++|+|+|+ +|++++ ++.|.+||+.+ ++.... ..+|
T Consensus 26 ~~d~~--~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~-------------------~~~~ 82 (297)
T 2ojh_A 26 IFNIR--TRKMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKV-------------------DTGF 82 (297)
T ss_dssp EEETT--TTEEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEEC-------------------CCTT
T ss_pred EEeCC--CCceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEe-------------------cccc
Confidence 55554 345555666899999999999999 577765 88999999998 765431 3334
Q ss_pred -CCCEEEEEEcCCCCEEEEEE--CCCeEEEEEc--cCCCccccceeecccccCEEEEEEecCCCcEEEE-EEeCCCcEEE
Q 001343 406 -PISVSRVAWSPDGNYVGVAF--TKHLIQLYSY--AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVV-TCGDDKLIKV 479 (1096)
Q Consensus 406 -~~~V~~l~~spd~~~l~s~~--~dg~i~vwd~--~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~-s~s~d~~i~i 479 (1096)
...|.+++|+|||++|++++ .++.+.||.+ .+++ .. .+..+ ..+..++|+|+++ .|+ +++.|+.+++
T Consensus 83 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~--~l~~~~~~~~~~~l 155 (297)
T 2ojh_A 83 ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGK--SFTYCGIRDQVFDI 155 (297)
T ss_dssp CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSS--EEEEEEEETTEEEE
T ss_pred ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCC--EEEEEECCCCceEE
Confidence 46789999999999999998 3345555555 4443 22 23333 3489999999999 454 7888999999
Q ss_pred EE--cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEE-CCCeEEEEEcC-CCCeeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 480 WE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYD-TMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 480 wd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
|+ ..+.....+..+...+.+++|+| ++.+|+.++ .++.+++|+++ .......+..+...+..++|+|+|++|++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 233 (297)
T 2ojh_A 156 YSMDIDSGVETRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVF 233 (297)
T ss_dssp EEEETTTCCEEECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEE
T ss_pred EEEECCCCcceEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEE
Confidence 99 55566677778888999999977 667777665 59999999987 45555666666778999999999999998
Q ss_pred EeeccC-------CCCeEEEEeCCCCeeeEE--EcCcCccceEEEEEeCCCCEEEEEEcCC
Q 001343 556 CGTSKD-------GDSFLVEWNESEGTIKRT--YAGFRKKSNGVVQFDTTQNHFLAVGEDS 607 (1096)
Q Consensus 556 ~~~~~~-------~~~~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg 607 (1096)
++.+.. ....|++||+.+++.... +.++.. .+..++|+|+++.|++++.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 234 VSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG-TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT-TSCSCCBCTTSSEEEEEEECC
T ss_pred EEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc-ccccceECCCCCEEEEEEecc
Confidence 875321 136799999998866443 335554 677799999999998887653
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=2.6e-19 Score=214.63 Aligned_cols=271 Identities=11% Similarity=0.057 Sum_probs=194.6
Q ss_pred CCceEEEEEcCCCCcEEEEEeC-CCeEEEEecCCCCeeecccceeecccccCccccccccccCC-CCEEEEEEcCCCCEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSS-NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYV 421 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spd~~~l 421 (1096)
..+|++++|+|||++ ||.++. ||++.||++.+++... +..|. ..|..++|||| +.+
T Consensus 21 ~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l 78 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI 78 (582)
T ss_dssp HSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred ccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence 347999999999994 776665 9999999986665432 33444 68999999999 777
Q ss_pred EEEEC---CCeEEEEEccC--CCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC
Q 001343 422 GVAFT---KHLIQLYSYAG--SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1096)
Q Consensus 422 ~s~~~---dg~i~vwd~~~--~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~ 495 (1096)
++++. +....+|.+.. ...... +..+ ..+...+|+||++.+.+++++.|+ +.+|| .+++...... +..
T Consensus 79 ~~~~~~~g~~~~~l~~~~~~~~g~~~~---l~~~-~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~-~~~ 152 (582)
T 3o4h_A 79 LVRDVSKGAEQHALFKVNTSRPGEEQR---LEAV-KPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELAR-LPG 152 (582)
T ss_dssp EEEECSTTSCCEEEEEEETTSTTCCEE---CTTS-CSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEE-ESS
T ss_pred EEeccCCCCcceEEEEEeccCCCcccc---ccCC-CCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeec-CCC
Confidence 77765 45566766543 222221 2222 234467999999864555555554 55999 6665544443 333
Q ss_pred CeEEEEeeecCCCcEEEEEECC----CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC
Q 001343 496 PVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~ 571 (1096)
.+++|+| ||++|++++.+ +.|++||+.+++.. .+..+...+..++|||||+.|+++.. ++...|++||+
T Consensus 153 --~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~ 225 (582)
T 3o4h_A 153 --FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDP 225 (582)
T ss_dssp --CEEEEEE--ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECT
T ss_pred --ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcC
Confidence 7888877 67899988877 78999999877654 56677778999999999999995543 22238999999
Q ss_pred CCCeeeEEEcCcCccceEEEE--------EeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCE
Q 001343 572 SEGTIKRTYAGFRKKSNGVVQ--------FDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1096)
Q Consensus 572 ~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 643 (1096)
.+++.. .+.++.. .+..+. |+|+|..+++++.++.+++|++ ++.... .. ..+.+++|+ ++++
T Consensus 226 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~--~~v~~~~~s-dg~~ 295 (582)
T 3o4h_A 226 RDGSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---PQ--GNHGRVVLW-RGKL 295 (582)
T ss_dssp TTCCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---CS--SEEEEEEEE-TTEE
T ss_pred CCCcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CC--CceEEEEec-CCEE
Confidence 998887 6666544 444455 9999988889999999999999 665541 22 368899999 9999
Q ss_pred EEEEECCCc---EEEEEcC
Q 001343 644 LAVTTADNG---FKILANA 659 (1096)
Q Consensus 644 l~~~~~dg~---i~iwd~~ 659 (1096)
+++++.+.. +.+|+..
T Consensus 296 l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 296 VTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEEETTEEEEEEEETTC
T ss_pred EEEEcCCCCCCeEEEEcCC
Confidence 988887744 5555543
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.83 E-value=3.3e-18 Score=189.58 Aligned_cols=298 Identities=9% Similarity=0.081 Sum_probs=203.3
Q ss_pred cEEEEEECCCeEEEEEcCCCCeeeEEeCCCC--cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC--
Q 001343 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-- 584 (1096)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-- 584 (1096)
+++++++.++.|.+||+.+++....+..... .+..++|+|+|+.++++.. .++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC---CCCeEEEEECCCCCeEeeEEcCCcc
Confidence 4789999999999999998877766654432 4788999999988766553 27899999999999888776432
Q ss_pred --ccceEEEEEeCCCCEEEEEE------------cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC
Q 001343 585 --KKSNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 585 --~~~i~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
...+..++|+|++++++++. .++.|.+||+.+++.+..+.... .+.+++|+|++++++++ +
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEE--S
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC---CcceeEECCCCCEEEEe--C
Confidence 11345689999999998886 57999999999998888776532 57889999999988887 6
Q ss_pred CcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCcee--EeccCCCcCCCcccCCCCccCCCCCC
Q 001343 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK--VERSSPVRPSPIINGVDPTSRSMDKP 728 (1096)
Q Consensus 651 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~--~~~~~~~~~~~~~~~~~~~~s~d~~~ 728 (1096)
+.|.+||+.++ +....+..... ...+.|+|+|+.++.....+... ..... ....+..
T Consensus 154 ~~i~~~d~~~~-~~~~~~~~~~~------~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~ 212 (337)
T 1pby_B 154 RDLHVMDPEAG-TLVEDKPIQSW------EAETYAQPDVLAVWNQHESSGVMATPFYTA--------------RKDIDPA 212 (337)
T ss_dssp SSEEEEETTTT-EEEEEECSTTT------TTTTBCCCBCCCCCCCCTTTTEEEEEEEEE--------------BTTSCTT
T ss_pred CeEEEEECCCC-cEeeeeecccc------CCCceeCCCccEEeeeccCCCceeeeeecc--------------ccccccc
Confidence 89999999887 33333332211 01236777777653332211100 00000 0000000
Q ss_pred ccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeec
Q 001343 729 RTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASA 808 (1096)
Q Consensus 729 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~ 808 (1096)
... .....+.+||.. .+....+.+.. +...+.+++|+|+++.++++ ++.|.+|++..
T Consensus 213 ~~~-~~~~~v~~~d~~----~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~------------- 269 (337)
T 1pby_B 213 DPT-AYRTGLLTMDLE----TGEMAMREVRI---MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK------------- 269 (337)
T ss_dssp SGG-GEEEEEEEEETT----TCCEEEEEEEE---CSSCEEEEEECTTSSEEEEE--ESEEEEEETTT-------------
T ss_pred ccc-ccccceEEEeCC----CCCceEeecCC---CCCceeeEEECCCCCEEEEe--CCeEEEEECCC-------------
Confidence 000 011246778876 34443444444 66678899999999988777 68899988632
Q ss_pred CccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCC
Q 001343 809 VPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSP 871 (1096)
Q Consensus 809 ~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h 871 (1096)
++.+. .+. ....+.+++|+|||++|++++ ++.|.+||+.+++.+..+..+
T Consensus 270 ---------~~~~~-~~~---~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 270 ---------NASIK-RVP---LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp ---------TEEEE-EEE---CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred ---------CcCcc-eec---CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 22222 111 234578899999999888877 799999999999988887654
No 150
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=1.7e-18 Score=197.18 Aligned_cols=256 Identities=13% Similarity=0.108 Sum_probs=176.7
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeec---ccceeecccccCccccccccccCCCCEEEEEEcCCCCE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS---KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 420 (1096)
...++++++++++. ++++|+.++ |+||+......... ....+. .........|...|.+++|+|+|++
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~l~~spdg~~ 106 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIV-------DKVQGLLVPMKFPIHHLALSCDNLT 106 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEE-------ECCCCEEECCSSCEEEEEECTTSCE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccccCccccc-------ccCccccccCCCcccEEEEcCCCCE
Confidence 34689999999998 688888887 89988643211000 000000 0000112236778999999999999
Q ss_pred EE----EEECCCeEEEEEccCC--------CccccceeecccccCEEEEEEecC-CCcEEEEEEeCCCcEEEEE-cCCce
Q 001343 421 VG----VAFTKHLIQLYSYAGS--------NDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGRK 486 (1096)
Q Consensus 421 l~----s~~~dg~i~vwd~~~~--------~~~~~~~~l~~h~~~v~~l~~s~d-~~~~~l~s~s~d~~i~iwd-~~~~~ 486 (1096)
|| +|+.|+.|+|||+.++ +.+.....+.+|...|++++|+|+ +. +|++++.||+|++|| .++..
T Consensus 107 lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 107 LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEE
T ss_pred EEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcc
Confidence 99 7888999999999765 222333456789999999999998 56 899999999999999 77777
Q ss_pred EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC-------CcEEEEEEcCCCCEEEEEeec
Q 001343 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-------HWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 487 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
+....+|...|.+++|+| +|++|++|+.||+|++||.+ +.....+..+. ..+.+++|++++.++++.+..
T Consensus 185 ~~~~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEEEECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred eeeccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 777788999999999987 57899999999999999998 44444443332 279999999998888765542
Q ss_pred c---CCCCeEEEEeCCCCe-----eeEEEc-------CcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeC
Q 001343 560 K---DGDSFLVEWNESEGT-----IKRTYA-------GFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDM 614 (1096)
Q Consensus 560 ~---~~~~~i~iwd~~~~~-----~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~ 614 (1096)
. .....+++|++.+.+ ....+. +... ....+.+-++.+++++++ ..+.|.++..
T Consensus 262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEe
Confidence 1 112348999987542 112221 1122 222233446777776665 3444555554
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=2.5e-19 Score=220.90 Aligned_cols=347 Identities=12% Similarity=0.023 Sum_probs=227.3
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCC-CCCccEEEEeCCCCEEEEEEC---------CCcEEEEEcC
Q 001343 590 VVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-LPNLPRLRFSKEGNLLAVTTA---------DNGFKILANA 659 (1096)
Q Consensus 590 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~---------dg~i~iwd~~ 659 (1096)
.+.|+|++. ++..+.|+.|++||+.+++....+..+.. ...+.+++|||||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 478999995 55555799999999999988777654421 013789999999999999886 7899999998
Q ss_pred CCcccc--ccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCC
Q 001343 660 IGLRSL--RAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDK 737 (1096)
Q Consensus 660 ~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~ 737 (1096)
++. .. ..+. ..+..++|||||+.++. +. ++.
T Consensus 99 ~g~-~~~~~~l~--------~~~~~~~~SPDG~~la~-------------------------------------~~-~~~ 131 (719)
T 1z68_A 99 NGE-FVRGNELP--------RPIQYLCWSPVGSKLAY-------------------------------------VY-QNN 131 (719)
T ss_dssp TTE-ECCSSCCC--------SSBCCEEECSSTTCEEE-------------------------------------EE-TTE
T ss_pred CCc-cccceecC--------cccccceECCCCCEEEE-------------------------------------EE-CCe
Confidence 873 21 1111 23566788877776633 32 367
Q ss_pred ccceeeeeeecCCceEEEEcCCCCCCcccE-----------------EEEEEecCCceEEEeecC-CeEEEeeccCCc--
Q 001343 738 PKPWQLAEIVDSGQCRLVTMPESTDTSSKV-----------------VRLLYTNSAVGLLALGSN-GVQKLWKWHRNE-- 797 (1096)
Q Consensus 738 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i-----------------~~l~~s~~~~~l~~~~~d-g~v~vw~~~~~~-- 797 (1096)
|++|++. ++....+...+ +...| .+++|||||+.|+.++.+ +.+.+|.+....
T Consensus 132 i~~~~~~----~g~~~~l~~~~---~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~ 204 (719)
T 1z68_A 132 IYLKQRP----GDPPFQITFNG---RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDE 204 (719)
T ss_dssp EEEESST----TSCCEECCCCC---BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSS
T ss_pred EEEEeCC----CCCcEEEecCC---CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCC
Confidence 8888876 34444433333 22222 489999999999888764 455555432111
Q ss_pred ---------cCCCCceeeecCccccccCccccc---cc----cccCCCcCCCeeeeeecCCCcEEEEecC-----CeEEE
Q 001343 798 ---------QNPSGKATASAVPQHWLPSSGLLM---AN----DVAGVNLEEAVPCIALSKNDSYVMSATG-----GKISL 856 (1096)
Q Consensus 798 ---------~~~~g~~~~~~~i~~w~~~~~~~~---~~----~~~g~~~~~~v~~l~~s~dg~~la~~~d-----g~v~i 856 (1096)
....|.......+.+||+.++... .. .+.+ |...+..++||||++++++..+ ..|.+
T Consensus 205 ~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~ 282 (719)
T 1z68_A 205 QYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS--SDYYFSWLTWVTDERVCLQWLKRVQNVSVLSI 282 (719)
T ss_dssp SSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT--SCEEEEEEEESSSSEEEEEEEESSTTEEEEEE
T ss_pred CCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC--CcceEEEeEEeCCCeEEEEEeccccCeEEEEE
Confidence 011222223346788998887653 21 1233 7778999999999988877542 24899
Q ss_pred EE----cccceEEEee----cCCCCCee-----EEEEecCCCcEEEE--eeCCCe--EEEEeeccceeeeeecccccccc
Q 001343 857 FN----MMTFKVMTTF----MSPPPAST-----FLAFHPQDNNIIAI--GTEDST--IHIYNVRVDELCVWSIDTWEKRK 919 (1096)
Q Consensus 857 wd----~~~~~~~~~~----~~h~~~i~-----~l~~s~~d~~~l~s--~~~dg~--i~iw~~~~~~~~~w~~~~~~~~~ 919 (1096)
|| +.++++...+ ..|...+. .++|+| |++.++. ...+|. |.+|++.+++
T Consensus 283 ~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~g~~~l~~~~~~~~~------------- 348 (719)
T 1z68_A 283 CDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY-DAISYYKIFSDKDGYKHIHYIKDTVEN------------- 348 (719)
T ss_dssp EEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECT-TSSCEEEEEECTTSCEEEEEESSCSTT-------------
T ss_pred EcccCCCCCCceEEEEecccccCCceEccccCCccEECC-CCCeEEEEEEccCCceEEEEEECCCCc-------------
Confidence 99 8888877666 47777776 889999 8885554 445664 5555655443
Q ss_pred ceeeecCCCCCCCCCceEEEecCCcEEEE-Eec-----ceEEEEEccc--cee-ccccc---cCCCCCCCceEEEEeeCC
Q 001343 920 SVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHE-----TQLAIYDASK--MER-IRQWT---PQDALSAPISCAVYSCNS 987 (1096)
Q Consensus 920 ~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d-----~~i~iwd~~~--~~~-~~~~~---~~~~~~~~i~~l~~s~dg 987 (1096)
...+..+.. .+..+.++ +++.|+. +.+ +..++|.+.. +.. ...+. ..+ ...+..+.|+|||
T Consensus 349 ---~~~lt~~~~-~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~--~~~~~~~~~s~dg 421 (719)
T 1z68_A 349 ---AIQITSGKW-EAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKE--RCQYYTASFSDYA 421 (719)
T ss_dssp ---CEECSCSSS-CEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTT--TBCBEEEEECGGG
T ss_pred ---eEecccCce-EEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCC--CCceEEEEECCCC
Confidence 122333332 56778888 8888887 554 6788888753 421 12222 112 5678899999999
Q ss_pred cEEEEEe-cC--CcEEEEecCCCceeEEEc
Q 001343 988 QLVFATF-CD--GNIGVFDADTLRLRCYIA 1014 (1096)
Q Consensus 988 ~~la~~~-~d--g~i~vwd~~~~~~~~~~~ 1014 (1096)
++++... .+ ..+.+||+.+++....+.
T Consensus 422 ~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 422 KYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp SSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred CEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 9877543 33 468899998888554443
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=222.06 Aligned_cols=311 Identities=11% Similarity=0.069 Sum_probs=209.2
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCC---CEEEEEEcCCCCEEEEEE
Q 001343 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI---SVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 349 ~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spd~~~l~s~~ 425 (1096)
+++|+|+|+ +++++ .|+.|++||+.+++.... +.+|.. .|.+++|||||++||+++
T Consensus 20 ~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~~ 78 (719)
T 1z68_A 20 FPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLES 78 (719)
T ss_dssp CCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEEE
T ss_pred ccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEEe
Confidence 689999996 56655 699999999999886532 233322 488999999999999987
Q ss_pred C---------CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe-eCCC
Q 001343 426 T---------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EGHE 494 (1096)
Q Consensus 426 ~---------dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-~~~~ 494 (1096)
. ++.|++||+.+++.+... .+ ...+..++|+|||+ .|+.+. |+.|++|| .+++..... .++.
T Consensus 79 ~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 79 DYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred cCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 6 689999999998763111 12 25688999999999 677775 78999999 666654322 2333
Q ss_pred CCe-----------------EEEEeeecCCCcEEEEEECCC----------------------------------eEEEE
Q 001343 495 APV-----------------YSICPHHKENIQFIFSTAIDG----------------------------------KIKAW 523 (1096)
Q Consensus 495 ~~v-----------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i~iw 523 (1096)
..| .+++|+| ||++|++++.|. .|++|
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSP--DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSP--NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECT--TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred CCeEcccccceeeeecccCcccEEECC--CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 322 4788876 778999887652 78899
Q ss_pred EcCCCCee--eE------EeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEe----CCCCeeeEEE----cCcCccc
Q 001343 524 LYDTMGSR--VD------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN----ESEGTIKRTY----AGFRKKS 587 (1096)
Q Consensus 524 d~~~~~~~--~~------~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd----~~~~~~~~~~----~~~~~~~ 587 (1096)
|+.++... .. +..+...+.+++|+||++.+++.....+....|++|| ..+++....+ .++.. .
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~-~ 308 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTG-W 308 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSS-C
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCc-e
Confidence 99876542 11 2245668899999999877666443222235699999 8887766554 24433 3
Q ss_pred eE-----EEEEeCCCCEEEE--EEcCC--eEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC-----CcE
Q 001343 588 NG-----VVQFDTTQNHFLA--VGEDS--QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-----NGF 653 (1096)
Q Consensus 588 i~-----~~~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i 653 (1096)
+. .+.|+|+|+.++. ...+| .|++|++.+++. ..+.... ..+..+.++ +++.|+..+.+ +..
T Consensus 309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~--~~v~~~~~~-d~~~i~~~~~~~~~~~~~~ 384 (719)
T 1z68_A 309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSGK--WEAINIFRV-TQDSLFYSSNEFEEYPGRR 384 (719)
T ss_dssp SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCSS--SCEEEEEEE-CSSEEEEEESCGGGCTTCB
T ss_pred EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccCc--eEEEEEEEE-eCCEEEEEEecCCCCCceE
Confidence 43 6789999986655 33444 677888877763 3343322 256777777 88877777765 788
Q ss_pred EEEEcCC--CccccccccCCCcccccCcceeEEeecCCCeEEec
Q 001343 654 KILANAI--GLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1096)
Q Consensus 654 ~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~ 695 (1096)
++|.+.. +......+... .......+..+.|+|+|+.++..
T Consensus 385 ~l~~~~~~~g~~~~~~l~~~-~~~~~~~~~~~~~s~dg~~l~~~ 427 (719)
T 1z68_A 385 NIYRISIGSYPPSKKCVTCH-LRKERCQYYTASFSDYAKYYALV 427 (719)
T ss_dssp EEEEEECSSSSCCEEESSTT-TTTTTBCBEEEEECGGGSSEEEE
T ss_pred EEEEEeCCCCCCCceeccCc-cCCCCCceEEEEECCCCCEEEEE
Confidence 9998754 21111122110 00012235568899999887543
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=1.3e-17 Score=185.51 Aligned_cols=269 Identities=14% Similarity=0.106 Sum_probs=187.2
Q ss_pred eeecCCCCcceE--EeecCCCceEEEEEcCCCCcEEEEEeC--CCeEEEEecCCCCeeecccceeecccccCcccccccc
Q 001343 327 TWSLDDLPRTVA--VSLHQGSTVISMDFHPSHQTLLLVGSS--NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402 (1096)
Q Consensus 327 ~~~~~~~~~~~~--~~l~h~~~V~~v~fsp~g~~llasg~~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1096)
+|.++...+.+. ....+...+..++|+|+|+ +++++.. ++.|.+|++.+++.... ..+
T Consensus 20 v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~-----------------~~~ 81 (347)
T 3hfq_A 20 QGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL-----------------NTV 81 (347)
T ss_dssp EEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEE-----------------EEE
T ss_pred EEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEe-----------------eee
Confidence 677766555443 3455778899999999998 6776643 78999999977653211 013
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEE-CCCeEEEEEccCCCccccceeecc---------cccCEEEEEEecCCCcEEEEEEe
Q 001343 403 KDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDA---------HVGAVNDLAFAYPNKLLCVVTCG 472 (1096)
Q Consensus 403 ~~h~~~V~~l~~spd~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~l~~---------h~~~v~~l~~s~d~~~~~l~s~s 472 (1096)
..+...+..++|+|||++|++++ .++.|.+|++...........+.. +...+.+++|+|||+ ++++..
T Consensus 82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l~v~~~ 159 (347)
T 3hfq_A 82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--LAVIDL 159 (347)
T ss_dssp EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--EEEEET
T ss_pred ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--EEEEeC
Confidence 34667788999999999999888 679999999964333332222211 123588999999999 788888
Q ss_pred CCCcEEEEE-c-CCceEE--EeeCC-CCCeEEEEeeecCCCcEEEE-EECCCeEEEEEcCC--CCee--eEEeCCC----
Q 001343 473 DDKLIKVWE-L-SGRKLF--NFEGH-EAPVYSICPHHKENIQFIFS-TAIDGKIKAWLYDT--MGSR--VDYDAPG---- 538 (1096)
Q Consensus 473 ~d~~i~iwd-~-~~~~~~--~~~~~-~~~v~~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~--~~~~--~~~~~~~---- 538 (1096)
.++.|++|+ . +++... .+..+ ...+..++|+| +|+++++ +..++.|.+|+++. +... .......
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp--dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 237 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP--DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYT 237 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCC
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC--CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCC
Confidence 899999999 5 454332 22222 33577889976 6675555 56789999999885 3221 1222221
Q ss_pred --CcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC---CeeeEEEcCcCccceEEEEEeCCCCEEEEEEc-CCeEEEE
Q 001343 539 --HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQIKFW 612 (1096)
Q Consensus 539 --~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iw 612 (1096)
..+..++|+|||++|+++.. .++.|.+|++.. .+.+..+..+.. .+..++|+|+|++|++++. ++.|.+|
T Consensus 238 ~~~~~~~i~~spdG~~l~v~~~---~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 238 AHNGAAAIRLSHDGHFLYVSNR---GYNTLAVFAVTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp SCCEEEEEEECTTSCEEEEEEE---TTTEEEEEEECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCcceeEEECCCCCEEEEEeC---CCCEEEEEEECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 35889999999998866543 278999999872 245555555443 5677999999999988875 4899999
Q ss_pred --eCCCCeEEE
Q 001343 613 --DMDNVNILT 621 (1096)
Q Consensus 613 --d~~~~~~~~ 621 (1096)
|..+++...
T Consensus 314 ~~d~~tg~l~~ 324 (347)
T 3hfq_A 314 ARDLTSGKLSL 324 (347)
T ss_dssp EECTTTCCEEE
T ss_pred EEeCCCCeEEe
Confidence 555666553
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=2.9e-18 Score=205.44 Aligned_cols=262 Identities=13% Similarity=0.170 Sum_probs=193.7
Q ss_pred CCCEEEEEEcCCCCEEEEEEC-CCeEEEEEccCCCccccceeecccc-cCEEEEEEecCCCcEEEEEEeC---CCcEEEE
Q 001343 406 PISVSRVAWSPDGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGD---DKLIKVW 480 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~l~~h~-~~v~~l~~s~d~~~~~l~s~s~---d~~i~iw 480 (1096)
..+|.+++|+|||++||+++. ||+++||++++++..+ +..|. ..+..++|+|| + ++++++. +....+|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~----lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK----LNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE----CCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe----eecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence 557999999999999999887 9999999997765433 44555 68999999999 5 7777765 5566776
Q ss_pred E--c--CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEE
Q 001343 481 E--L--SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1096)
Q Consensus 481 d--~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 556 (1096)
. . .+... .+.... .+...+|+|++++..+++++.++ +.+||+.+++.......+. .+++|+|||++++++
T Consensus 94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 6 4 55544 443322 34466888876655555555555 4599998876655444333 789999999999988
Q ss_pred eeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCC--eEEEEeCCCCeEEEEeecCCCCCCccE
Q 001343 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--QIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1096)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1096)
+.+..+...|++||+.+++.. .+..+.. .+..++|+|||+.|+++..++ .|++||+.+++.. .+..+.. .+..
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~--~~~~ 242 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSK--DFSS 242 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCS--HHHH
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCc--Chhh
Confidence 763333378999999988765 5666655 678899999999999888888 8999999998877 5554433 5666
Q ss_pred EE--------EeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCC
Q 001343 635 LR--------FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (1096)
Q Consensus 635 ~~--------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s 697 (1096)
++ |+|||.++++++.|+.+++|++ + +..... ...+..++|+ +|+.+++..+
T Consensus 243 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g-~~~~~~--------~~~v~~~~~s-dg~~l~~~s~ 301 (582)
T 3o4h_A 243 YRPTAITWLGYLPDGRLAVVARREGRSAVFID--G-ERVEAP--------QGNHGRVVLW-RGKLVTSHTS 301 (582)
T ss_dssp HCCSEEEEEEECTTSCEEEEEEETTEEEEEET--T-EEECCC--------SSEEEEEEEE-TTEEEEEEEE
T ss_pred hhhccccceeEcCCCcEEEEEEcCCcEEEEEE--C-CeeccC--------CCceEEEEec-CCEEEEEEcC
Confidence 77 9999999999999999999999 5 333211 2346788999 8887755433
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=9.6e-18 Score=186.85 Aligned_cols=280 Identities=11% Similarity=0.086 Sum_probs=189.3
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccC-CCCEEEEEEcCCCCEEEEE-EC
Q 001343 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV-PISVSRVAWSPDGNYVGVA-FT 426 (1096)
Q Consensus 349 ~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spd~~~l~s~-~~ 426 (1096)
.++++++++ ++++++.++.|.+||+.+++.+.. +..+ ...+..++|+|||++++++ ..
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKS-------------------CVMPDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSSCCSSCEEEECTTSSEEEEEETT
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEE-------------------EecCCCCCCceeEECCCCCEEEEEeCC
Confidence 456788877 799999999999999999876643 1112 2257789999999976554 56
Q ss_pred CCeEEEEEccCCCccccceeeccc-----ccCEEEEEEecCCCcEEEEEEeCC------------CcEEEEE-cCCce--
Q 001343 427 KHLIQLYSYAGSNDLRQHSQIDAH-----VGAVNDLAFAYPNKLLCVVTCGDD------------KLIKVWE-LSGRK-- 486 (1096)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~l~~h-----~~~v~~l~~s~d~~~~~l~s~s~d------------~~i~iwd-~~~~~-- 486 (1096)
++.|.+||+.+++...... + .+ ...+.+++|+|||+ +|++++.+ +.|.+|| .+++.
T Consensus 64 ~~~i~~~d~~t~~~~~~~~-~-~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 139 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTFHAN-L-SSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK 139 (349)
T ss_dssp TTEEEEEETTTTEEEEEEE-S-CCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred CCcEEEEeCCCCcEEEEEE-c-ccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCccccc
Confidence 8999999999887654321 1 22 23478999999999 67777755 8999999 66433
Q ss_pred -EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC---------------------C---cE
Q 001343 487 -LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------------------H---WC 541 (1096)
Q Consensus 487 -~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------------~---~i 541 (1096)
+..+.. ...+.+++|++ ++. +++++ +.|.+||..+++....+.... . ..
T Consensus 140 ~~~~~~~-~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (349)
T 1jmx_B 140 PVRTFPM-PRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 213 (349)
T ss_dssp CSEEEEC-CSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred eeeeccC-CCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence 334443 34588888876 556 55554 349999998887766554332 0 23
Q ss_pred EEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEE-EcCcCccceEEEEEeC-CCCEEEEEEcCCeEEEEeCCCCeE
Q 001343 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT-YAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNI 619 (1096)
Q Consensus 542 ~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1096)
..+++++++........ ....+..++..+++.... +... ...+..++++| ++++++++ ++.|++||+.+++.
T Consensus 214 ~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~ 287 (349)
T 1jmx_B 214 YTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADL-TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKL 287 (349)
T ss_dssp EEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEEC-SSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEE
T ss_pred eeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccC-CCcceeeEecCCCCCEEEEE--cCeEEEEECccCeE
Confidence 45666655432211100 011222345554442211 1122 23677899999 99999888 78999999999998
Q ss_pred EEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccc
Q 001343 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAV 668 (1096)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 668 (1096)
+..+.... .+.+++|+|++++|++++.++.|.+||..++ +.+..+
T Consensus 288 ~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~-~~~~~~ 332 (349)
T 1jmx_B 288 IKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNI 332 (349)
T ss_dssp EEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEE
T ss_pred EEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEecccc-ceeeee
Confidence 88876433 5789999999998888888999999999877 444443
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.80 E-value=4.7e-17 Score=180.98 Aligned_cols=244 Identities=9% Similarity=0.070 Sum_probs=171.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEEC---CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe-CCCcEEEE
Q 001343 405 VPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVW 480 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~d~~i~iw 480 (1096)
+...+..++|+|||+ |++++. ++.|.+|++.+++. +....+..+...+..++|+|||+ +|++++ .++.|.+|
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~p~~~a~spdg~--~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPGTPPAYVAVDEARQ--LVYSANYHKGTAEVM 113 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEESCCCSEEEEETTTT--EEEEEETTTTEEEEE
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCCCCCEEEEECCCCC--EEEEEeCCCCEEEEE
Confidence 456678899999999 555544 68999999977653 22224456778899999999999 667666 78999999
Q ss_pred E-c-CCc--eEEEeeC---------CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC-CCeee--EEeC-CCCcEEE
Q 001343 481 E-L-SGR--KLFNFEG---------HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRV--DYDA-PGHWCTT 543 (1096)
Q Consensus 481 d-~-~~~--~~~~~~~---------~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~--~~~~-~~~~i~~ 543 (1096)
+ . ++. .+..+.. +...+.+++|+| +|+++++...++.|++|++.. +.... .... ....+..
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp--dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~ 191 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP--DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH 191 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT--TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECC--CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence 9 4 333 2233321 122478899977 556666667789999999983 33222 2222 3336788
Q ss_pred EEEcCCCCEEEEEeeccCCCCeEEEEeCCC--Cee--eEEEcCcCc-----cceEEEEEeCCCCEEEE-EEcCCeEEEEe
Q 001343 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESE--GTI--KRTYAGFRK-----KSNGVVQFDTTQNHFLA-VGEDSQIKFWD 613 (1096)
Q Consensus 544 l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~--~~~--~~~~~~~~~-----~~i~~~~~~~~~~~l~~-~~~dg~i~iwd 613 (1096)
++|+|||++++++.. .++.+.+|++.. ++. +..+..... ..+..++|+|+|+++++ ...++.|.+|+
T Consensus 192 ~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~ 268 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGE---LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA 268 (347)
T ss_dssp EEECTTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred EEECCCCCEEEEEeC---CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence 999999998877653 378899998763 543 223332221 24777999999998755 55689999999
Q ss_pred CCC-C--eEEEEeecCCCCCCccEEEEeCCCCEEEEEECC-CcEEEEEcC
Q 001343 614 MDN-V--NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-NGFKILANA 659 (1096)
Q Consensus 614 ~~~-~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~ 659 (1096)
+.. + +.+..+..+.. .+..++|+|+|++|++++.+ +.|.+|++.
T Consensus 269 ~~~~g~~~~~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 269 VTADGHLTLIQQISTEGD--FPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp ECGGGCEEEEEEEECSSS--CCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ECCCCcEEEeEEEecCCC--CcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 973 2 44555554333 67899999999988888764 899999553
No 157
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=3.3e-17 Score=201.59 Aligned_cols=353 Identities=8% Similarity=-0.014 Sum_probs=225.8
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCC-CCc--cEEEEeCCCCEEEEEECC---------CcEEE
Q 001343 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL-PNL--PRLRFSKEGNLLAVTTAD---------NGFKI 655 (1096)
Q Consensus 588 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v--~~~~~s~~~~~l~~~~~d---------g~i~i 655 (1096)
...+.|+|++.+++++ |+.|++||+.+++....+..+... ..+ ..++|||||++|+.++.+ +.+.+
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~ 96 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence 4468999999888876 899999999999988777765431 122 448999999999999876 56779
Q ss_pred EEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCC
Q 001343 656 LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVT 735 (1096)
Q Consensus 656 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 735 (1096)
||+.++. .. .+..+. ..+...+|||||+.+|... +
T Consensus 97 ~d~~~~~-~~-~l~~~~-----~~~~~~~~SPdG~~la~~~--------------------------------------~ 131 (740)
T 4a5s_A 97 YDLNKRQ-LI-TEERIP-----NNTQWVTWSPVGHKLAYVW--------------------------------------N 131 (740)
T ss_dssp EETTTTE-EC-CSSCCC-----TTEEEEEECSSTTCEEEEE--------------------------------------T
T ss_pred EECCCCc-EE-EcccCC-----CcceeeEECCCCCEEEEEE--------------------------------------C
Confidence 9998883 22 233322 2466788888887774332 3
Q ss_pred CCccceeeeeeecCCceEEEEcCCCCCCcccE-----------------EEEEEecCCceEEEeecC-CeEEEeeccCCc
Q 001343 736 DKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV-----------------VRLLYTNSAVGLLALGSN-GVQKLWKWHRNE 797 (1096)
Q Consensus 736 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i-----------------~~l~~s~~~~~l~~~~~d-g~v~vw~~~~~~ 797 (1096)
+.|.+|+.. ++....++..+ +...+ ..+.|||||+.|+....| +.+.+|.+....
T Consensus 132 ~~i~~~~~~----~~~~~~lt~~g---~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~ 204 (740)
T 4a5s_A 132 NDIYVKIEP----NLPSYRITWTG---KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYS 204 (740)
T ss_dssp TEEEEESST----TSCCEECCSCC---BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECC
T ss_pred CeEEEEECC----CCceEEEcCCC---CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeec
Confidence 567777765 34444444433 32222 358999999999888765 458888774321
Q ss_pred c-------------CCCCceeeecCccccccCc---c---ccccccccCC--CcCCCeeeeeecCCCcEEEEec-C----
Q 001343 798 Q-------------NPSGKATASAVPQHWLPSS---G---LLMANDVAGV--NLEEAVPCIALSKNDSYVMSAT-G---- 851 (1096)
Q Consensus 798 ~-------------~~~g~~~~~~~i~~w~~~~---~---~~~~~~~~g~--~~~~~v~~l~~s~dg~~la~~~-d---- 851 (1096)
. ...|......++.+||+.+ + .......+.. ++...+..++|||||++++... .
T Consensus 205 ~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~ 284 (740)
T 4a5s_A 205 DESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNY 284 (740)
T ss_dssp STTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTE
T ss_pred CCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCE
Confidence 1 1233334444788999988 7 3333222100 1667799999999999776654 1
Q ss_pred CeEEEEEcccce----EEE--ee--cCCCCCee-----EEEEecCCCcEEE-Eee-CCC--eEEEEeeccceeeeeeccc
Q 001343 852 GKISLFNMMTFK----VMT--TF--MSPPPAST-----FLAFHPQDNNIIA-IGT-EDS--TIHIYNVRVDELCVWSIDT 914 (1096)
Q Consensus 852 g~v~iwd~~~~~----~~~--~~--~~h~~~i~-----~l~~s~~d~~~l~-s~~-~dg--~i~iw~~~~~~~~~w~~~~ 914 (1096)
..|++||+.+|+ +.. .+ ..|...+. .++|+| ||+.|+ ..+ .+| .|.+|++.++.
T Consensus 285 ~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp-DG~~l~~~~s~~~G~~~l~~~~~~~~~-------- 355 (740)
T 4a5s_A 285 SVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL-DGNSFYKIISNEEGYRHICYFQIDKKD-------- 355 (740)
T ss_dssp EEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT-TSSEEEEEEECTTSCEEEEEEETTCSS--------
T ss_pred EEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC-CCCEEEEEEEcCCCceEEEEEECCCCc--------
Confidence 369999998887 332 22 45655544 789999 888776 555 444 56677776655
Q ss_pred cccccceeeecCCCCCCCCCceEEEecCCcEEEE-Eec-------ceEEEEEcccceeccccccC-CCCCCCceEEEEee
Q 001343 915 WEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHE-------TQLAIYDASKMERIRQWTPQ-DALSAPISCAVYSC 985 (1096)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d-------~~i~iwd~~~~~~~~~~~~~-~~~~~~i~~l~~s~ 985 (1096)
..+...+.. .+..+. ++|++.|+. +.. ..|...++..+.....+... ......+..+.|||
T Consensus 356 -------~~~lT~g~~--~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~ 425 (740)
T 4a5s_A 356 -------CTFITKGTW--EVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSK 425 (740)
T ss_dssp -------CEESCCSSS--CEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECT
T ss_pred -------eEecccCCE--EEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECC
Confidence 233333422 444443 355777776 443 25666666655432223211 00145688999999
Q ss_pred CCcEEEEEecC---CcEEEEecCCCceeEEE
Q 001343 986 NSQLVFATFCD---GNIGVFDADTLRLRCYI 1013 (1096)
Q Consensus 986 dg~~la~~~~d---g~i~vwd~~~~~~~~~~ 1013 (1096)
||++++..... ..+.+++..+++....+
T Consensus 426 dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l 456 (740)
T 4a5s_A 426 EAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL 456 (740)
T ss_dssp TSSEEEEEECSBSSCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence 99987755443 36788888877754443
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.79 E-value=6.6e-17 Score=180.06 Aligned_cols=301 Identities=12% Similarity=0.064 Sum_probs=183.7
Q ss_pred EEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEE-EcCCeEEEEeCCCCeEEE
Q 001343 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILT 621 (1096)
Q Consensus 543 ~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~ 621 (1096)
.+++++++.++++++. ++.|++||..+++.+..+..+....+..++|+|+++.++++ ..++.|++||+.+++.+.
T Consensus 4 g~~~~~~~~~~v~~~~----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNY----PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF 79 (349)
T ss_dssp CCCCCTTCEEEEEEET----TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cccccCCCEEEEEeCC----CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence 3456778888888876 89999999999999988876542245678999999876554 468999999999999887
Q ss_pred EeecCCC----CCCccEEEEeCCCCEEEEEECC------------CcEEEEEcCCCccccccccCCCcccccCcceeEEe
Q 001343 622 STDAEGG----LPNLPRLRFSKEGNLLAVTTAD------------NGFKILANAIGLRSLRAVENPPFEALRTPIESVAL 685 (1096)
Q Consensus 622 ~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 685 (1096)
.+..... ...+..++|+|+|+++++++.+ +.|.+||+.++. ...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~------------------- 139 (349)
T 1jmx_B 80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL-EAK------------------- 139 (349)
T ss_dssp EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG-GBC-------------------
T ss_pred EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc-ccc-------------------
Confidence 7764321 1237899999999999988865 566666654431 000
Q ss_pred ecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcc
Q 001343 686 KVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSS 765 (1096)
Q Consensus 686 s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1096)
...... +..
T Consensus 140 -----------------------------------------------------------------~~~~~~------~~~ 148 (349)
T 1jmx_B 140 -----------------------------------------------------------------PVRTFP------MPR 148 (349)
T ss_dssp -----------------------------------------------------------------CSEEEE------CCS
T ss_pred -----------------------------------------------------------------eeeecc------CCC
Confidence 000000 112
Q ss_pred cEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcE
Q 001343 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (1096)
Q Consensus 766 ~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~ 845 (1096)
.+.+++|+|+|+ +++++ +.+.+|+. .+++... .++. ...... ..+.|
T Consensus 149 ~~~~~~~s~dg~-l~~~~--~~i~~~d~----------------------~~~~~~~-~~~~-~~~~~~--~~~~~---- 195 (349)
T 1jmx_B 149 QVYLMRAADDGS-LYVAG--PDIYKMDV----------------------KTGKYTV-ALPL-RNWNRK--GYSAP---- 195 (349)
T ss_dssp SCCCEEECTTSC-EEEES--SSEEEECT----------------------TTCCEEE-EECS-TTCCCT--TBCCC----
T ss_pred cccceeECCCCc-EEEcc--CcEEEEeC----------------------CCCceec-cccc-cccCCc--cccCc----
Confidence 345566666666 44432 22555543 2222111 0110 000000 00011
Q ss_pred EEEecCCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCc-----------EEEEeeCCCeEEEEeeccceeeeeeccc
Q 001343 846 VMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN-----------IIAIGTEDSTIHIYNVRVDELCVWSIDT 914 (1096)
Q Consensus 846 la~~~dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~-----------~l~s~~~dg~i~iw~~~~~~~~~w~~~~ 914 (1096)
+.+.+|......... .....+++++ ++. ++.....++.+.+|++..
T Consensus 196 ------~~~~~~~~~~~~~~~------~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 252 (349)
T 1jmx_B 196 ------DVLYFWPHQSPRHEF------SMLYTIARFK-DDKQDPATADLLYGYLSVDLKTGKTHTQEFAD---------- 252 (349)
T ss_dssp ------BCCCCCCCCCTTCEE------EEEEEEEEC--------CCCEEEEEEEEEETTTCCEEEEEEEE----------
T ss_pred ------cceeeecCCCcceeE------EeeeeeeecC-CCcCCccccccceeEEEEeccCCcEEeccccc----------
Confidence 111222211110000 0233456665 332 111223334444444321
Q ss_pred cccccceeeecCCCCCCCCCceEEEec-CCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEE
Q 001343 915 WEKRKSVTIHIPAGKTPTGDTRVQFNA-DQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFAT 993 (1096)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~v~~v~fs~-dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 993 (1096)
.. ..+..++|+| ||++++++ ++.|.+||+.+++.+..+.. ...+.+++|+|||++|+++
T Consensus 253 --------------~~-~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~ 312 (349)
T 1jmx_B 253 --------------LT-ELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL----DHTYYCVAFDKKGDKLYLG 312 (349)
T ss_dssp --------------CS-SCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC----SSCCCEEEECSSSSCEEEE
T ss_pred --------------CC-CcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC----CCCccceEECCCCCEEEEe
Confidence 11 1678899999 99999888 89999999999998777654 3457899999999999988
Q ss_pred ecCCcEEEEecCCCceeEEEc
Q 001343 994 FCDGNIGVFDADTLRLRCYIA 1014 (1096)
Q Consensus 994 ~~dg~i~vwd~~~~~~~~~~~ 1014 (1096)
+.++.|.+||+.+++....+.
T Consensus 313 ~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 313 GTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp SBSSEEEEEETTTTEEEEEEE
T ss_pred cCCCeEEEEeccccceeeeee
Confidence 899999999999998766554
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=1.3e-16 Score=178.45 Aligned_cols=271 Identities=14% Similarity=0.147 Sum_probs=183.9
Q ss_pred EEEEEe----CCCeEEEEecC--CCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECC----C
Q 001343 359 LLLVGS----SNGEITLWELA--MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK----H 428 (1096)
Q Consensus 359 llasg~----~dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~d----g 428 (1096)
++++|+ .++.|.+|++. +++.... ... +...+..++|+|||++|++++.+ +
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~-----------------~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~ 75 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPL-----------------SDA--EVANPSYLIPSADGKFVYSVNEFSKDQA 75 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEE-----------------EEE--ECSCCCSEEECTTSSEEEEEECCSSTTC
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEe-----------------ecc--cCCCCceEEECCCCCEEEEEEccCCCCC
Confidence 466664 35689999774 4543321 012 56678889999999999999886 7
Q ss_pred eEEEEEccCC-CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe------eC--------
Q 001343 429 LIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF------EG-------- 492 (1096)
Q Consensus 429 ~i~vwd~~~~-~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~------~~-------- 492 (1096)
.|.+|+++.. ..+..+.....+......+++ +++. ++++...++.|.+|+ .....+..+ .+
T Consensus 76 ~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 152 (361)
T 3scy_A 76 AVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ 152 (361)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred cEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence 9999998763 223333334445667788888 7773 344444688999999 433322111 11
Q ss_pred CCCCeEEEEeeecCCCcEEEEEE-CCCeEEEEEcCCCCe------e-------eEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 493 HEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDTMGS------R-------VDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~------~-------~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
+...+.+++|+| +|+++++++ .++.|++|+++.... . .........+..++|+|+|++++++..
T Consensus 153 ~~~~~~~~~~sp--dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 230 (361)
T 3scy_A 153 TMPHLHCVRITP--DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE 230 (361)
T ss_dssp SSCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CCCcceEEEECC--CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence 123357889876 667665555 589999999886542 1 122234456889999999998887763
Q ss_pred ccCCCCeEEEEeCCCCee--eEEEcCcC--ccceEEEEEeCCCCEEEEEEcC--CeEEEEeCC--CCe--EEEEeecCCC
Q 001343 559 SKDGDSFLVEWNESEGTI--KRTYAGFR--KKSNGVVQFDTTQNHFLAVGED--SQIKFWDMD--NVN--ILTSTDAEGG 628 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~--~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d--g~i~iwd~~--~~~--~~~~~~~~~~ 628 (1096)
.++.|.+|++.+++. +..+.... ......++|+|+|++|+++..+ +.|.+|++. +++ .+..+.. .
T Consensus 231 ---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g- 305 (361)
T 3scy_A 231 ---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G- 305 (361)
T ss_dssp ---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S-
T ss_pred ---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C-
Confidence 278999999987754 33332221 1245689999999998777654 899999996 444 3444443 2
Q ss_pred CCCccEEEEeCCCCEEEEEE-CCCcEEEEEcC
Q 001343 629 LPNLPRLRFSKEGNLLAVTT-ADNGFKILANA 659 (1096)
Q Consensus 629 ~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~ 659 (1096)
..+..++|+|+|++|++++ .++.|.+|++.
T Consensus 306 -~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 306 -IHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp -SCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred -CCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 2678999999999888888 57899997654
No 160
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=7.8e-17 Score=182.44 Aligned_cols=298 Identities=11% Similarity=0.009 Sum_probs=194.7
Q ss_pred CcceEEeec-CCCceEE-----EEEcCCCCcEEEEEeC-CC--eEEEEecCCCCeeecccceeecccccCcccccccccc
Q 001343 334 PRTVAVSLH-QGSTVIS-----MDFHPSHQTLLLVGSS-NG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 334 ~~~~~~~l~-h~~~V~~-----v~fsp~g~~llasg~~-dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
.+..+..+. |...+.. .+|||||++ ||.++. +| .|.+||+.+++.... ..+
T Consensus 19 ~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~-l~~~~~~~g~~~l~~~d~~~g~~~~l-------------------t~~ 78 (388)
T 3pe7_A 19 TGAQVTRLTPPDVTCHRNYFYQKCFTRDGSK-LLFGGAFDGPWNYYLLDLNTQVATQL-------------------TEG 78 (388)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCE-EEEEECTTSSCEEEEEETTTCEEEEC-------------------CCS
T ss_pred CCcceEEecCCcccccchhhcCccCCCCCCE-EEEEEcCCCCceEEEEeCCCCceEEe-------------------eeC
Confidence 344444444 6656666 899999995 555555 66 488889888776531 344
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEE--EecCCCcEEEEEE-----------
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA--FAYPNKLLCVVTC----------- 471 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~--~s~d~~~~~l~s~----------- 471 (1096)
+...+..++|||||++|+.++.++.|++||+.+++... .+..+...+.... ++++++ .++..
T Consensus 79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~ 153 (388)
T 3pe7_A 79 RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLT 153 (388)
T ss_dssp SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCC
T ss_pred CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCccccccc
Confidence 55555567899999999999999999999999987544 2334555554444 488998 55532
Q ss_pred -----------eCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC------CeEEEEEcCCCCeeeE
Q 001343 472 -----------GDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVD 533 (1096)
Q Consensus 472 -----------s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~ 533 (1096)
+.+..|.+|| .+++ ...+..+...+..+.|+|. +|..|+.+..+ ..|.++|....... .
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~ 230 (388)
T 3pe7_A 154 DWKKFHEFYFTKPCCRLMRVDLKTGE-STVILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMR-K 230 (388)
T ss_dssp SHHHHHHHGGGCCCEEEEEEETTTCC-EEEEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCE-E
T ss_pred ccchhhhhhccCCcceEEEEECCCCc-eEEeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceE-E
Confidence 2447899999 5554 4555556777889998761 44677776653 36777776654433 3
Q ss_pred EeCCC--CcEEEEEEcCCCCEEEEEeeccCC-CCeEEEEeCCCCeeeE--EEcCcCc--cceEEEEEeCCCCEEEEE---
Q 001343 534 YDAPG--HWCTTMLYSADGSRLFSCGTSKDG-DSFLVEWNESEGTIKR--TYAGFRK--KSNGVVQFDTTQNHFLAV--- 603 (1096)
Q Consensus 534 ~~~~~--~~i~~l~~s~~~~~l~~~~~~~~~-~~~i~iwd~~~~~~~~--~~~~~~~--~~i~~~~~~~~~~~l~~~--- 603 (1096)
+..+. ..+..++|+|||+.|+..+..... ...|++||+.+++... .+.++.. .......|+|+|+.|+..
T Consensus 231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 310 (388)
T 3pe7_A 231 VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQD 310 (388)
T ss_dssp SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------
T ss_pred eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeee
Confidence 33333 257889999999988766542211 2249999999887533 3332100 001113689999887754
Q ss_pred ------EcCCeEEEEeCCCCeEEEEeecCCCCC--------CccEEEEeCCCCEEEEEEC-CCcEEEEEcC
Q 001343 604 ------GEDSQIKFWDMDNVNILTSTDAEGGLP--------NLPRLRFSKEGNLLAVTTA-DNGFKILANA 659 (1096)
Q Consensus 604 ------~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~ 659 (1096)
..+..|++||+.+++............ .+..++|+|||+.|+..+. ++...+|.+.
T Consensus 311 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 311 DSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp ------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 456689999999887654443322100 3678899999998887664 6777777653
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.78 E-value=2.4e-17 Score=202.86 Aligned_cols=314 Identities=11% Similarity=0.104 Sum_probs=203.4
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC-----CCEEEEEEcCCCCE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-----ISVSRVAWSPDGNY 420 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~l~~spd~~~ 420 (1096)
...+++|+|||+ +++++ |+.|++||+.+++.... +.+|. .....++|||||++
T Consensus 18 ~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~~ 75 (740)
T 4a5s_A 18 KLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQF 75 (740)
T ss_dssp CCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSSE
T ss_pred cccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCCE
Confidence 467899999998 68876 99999999999886531 33333 23355899999999
Q ss_pred EEEEECC---------CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEE-
Q 001343 421 VGVAFTK---------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN- 489 (1096)
Q Consensus 421 l~s~~~d---------g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~- 489 (1096)
|+.++.+ +.+.+||+.+++... +..|.+.+...+|||||+ .|+.+. |+.|++|| .+++..+.
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECC
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEEc
Confidence 9998876 566799999987543 667888999999999999 677764 78999999 56654432
Q ss_pred eeCCCCCe-----------------EEEEeeecCCCcEEEEEECCC----------------------------------
Q 001343 490 FEGHEAPV-----------------YSICPHHKENIQFIFSTAIDG---------------------------------- 518 (1096)
Q Consensus 490 ~~~~~~~v-----------------~~~~~~~~~~~~~l~s~~~dg---------------------------------- 518 (1096)
..++...+ ..+.|+| ||+.|+.++.|.
T Consensus 149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp--Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~ 226 (740)
T 4a5s_A 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSP--NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNP 226 (740)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECT--TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCC
T ss_pred CCCCccceecCcccccccchhcCCCcceEECC--CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCC
Confidence 22333323 2477866 778888875321
Q ss_pred --eEEEEEcCC---CC--eeeEEeC------CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe----ee--EE
Q 001343 519 --KIKAWLYDT---MG--SRVDYDA------PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT----IK--RT 579 (1096)
Q Consensus 519 --~i~iwd~~~---~~--~~~~~~~------~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~----~~--~~ 579 (1096)
+|++||+.+ ++ ....+.. +...+..++|+|||+.++........+..|++||+.+++ +. ..
T Consensus 227 ~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~ 306 (740)
T 4a5s_A 227 TVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ 306 (740)
T ss_dssp EEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC
T ss_pred eeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE
Confidence 578899887 63 2333332 556789999999999777665433335579999998887 21 22
Q ss_pred E--cCcCccce-----EEEEEeCCCCEEE-EEEc-C--CeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEE
Q 001343 580 Y--AGFRKKSN-----GVVQFDTTQNHFL-AVGE-D--SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1096)
Q Consensus 580 ~--~~~~~~~i-----~~~~~~~~~~~l~-~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1096)
+ .++.. .+ ....|+|||+.++ ..+. + ..|++|+..+++......+. ..|..+.. ++++.|+..+
T Consensus 307 l~~~~~~~-~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~---~~v~~~~~-~d~~~i~f~~ 381 (740)
T 4a5s_A 307 HIEMSTTG-WVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGT---WEVIGIEA-LTSDYLYYIS 381 (740)
T ss_dssp EEEECSSS-CSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSS---SCEEEEEE-ECSSEEEEEE
T ss_pred eeeccCCc-eEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCC---EEEEEEEE-EeCCEEEEEE
Confidence 2 23332 22 2578999999877 6653 3 46889999877665443332 14555432 4466555544
Q ss_pred CC-----CcEEEEEcCCCc-cccccccCCCcccccCcceeEEeecCCCeEEecC
Q 001343 649 AD-----NGFKILANAIGL-RSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (1096)
Q Consensus 649 ~d-----g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~ 696 (1096)
.. +...||.+.... .....+.... ...........|+|+|++++...
T Consensus 382 ~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~-~~~~~~~~~~~~S~dg~~~~~~~ 434 (740)
T 4a5s_A 382 NEYKGMPGGRNLYKIQLIDYTKVTCLSCEL-NPERCQYYSVSFSKEAKYYQLRC 434 (740)
T ss_dssp SCGGGCTTCBEEEEEETTEEEEEEESSTTT-STTTBCBEEEEECTTSSEEEEEE
T ss_pred ecCCCCCceeEEEEEECCCCCcceeecccc-CCCCCceEEEEECCCCCEEEEEe
Confidence 43 344555443221 1111121110 00123456789999999875443
No 162
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.78 E-value=3.1e-16 Score=175.39 Aligned_cols=282 Identities=9% Similarity=0.034 Sum_probs=187.8
Q ss_pred eeecCCCCcceE--EeecCCCceEEEEEcCCCCcEEEEEeCC----CeEEEEecCC--CCeeecccceeecccccCcccc
Q 001343 327 TWSLDDLPRTVA--VSLHQGSTVISMDFHPSHQTLLLVGSSN----GEITLWELAM--RDRLVSKPFKIWDMAACSLPFQ 398 (1096)
Q Consensus 327 ~~~~~~~~~~~~--~~l~h~~~V~~v~fsp~g~~llasg~~d----g~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~ 398 (1096)
+|.++...+.+. ... +...+..++|+|+|+ +|++++.+ +.|.+|++.. ++....
T Consensus 31 ~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~-~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~---------------- 92 (361)
T 3scy_A 31 TFRFNEETGESLPLSDA-EVANPSYLIPSADGK-FVYSVNEFSKDQAAVSAFAFDKEKGTLHLL---------------- 92 (361)
T ss_dssp EEEEETTTCCEEEEEEE-ECSCCCSEEECTTSS-EEEEEECCSSTTCEEEEEEEETTTTEEEEE----------------
T ss_pred EEEEeCCCCCEEEeecc-cCCCCceEEECCCCC-EEEEEEccCCCCCcEEEEEEeCCCCcEEEe----------------
Confidence 777765555443 334 788899999999999 56666664 8999999876 332211
Q ss_pred ccccccCCCCEEEEEEcCCCCEEEEEE-CCCeEEEEEccCCCccccceeec-----------ccccCEEEEEEecCCCcE
Q 001343 399 ASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQID-----------AHVGAVNDLAFAYPNKLL 466 (1096)
Q Consensus 399 ~~~~~~h~~~V~~l~~spd~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~l~-----------~h~~~v~~l~~s~d~~~~ 466 (1096)
.....+......+++ ++++|++++ .++.|.+|++.....+....... .+...+.+++|+|||+.
T Consensus 93 -~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~- 168 (361)
T 3scy_A 93 -NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY- 168 (361)
T ss_dssp -EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE-
T ss_pred -eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE-
Confidence 012234557788888 888888776 57899999998654443221111 12334688999999994
Q ss_pred EEEEEeCCCcEEEEE-cCCc-------eE------EEeeCCCCCeEEEEeeecCCCcEEEEEE-CCCeEEEEEcCCCCee
Q 001343 467 CVVTCGDDKLIKVWE-LSGR-------KL------FNFEGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDTMGSR 531 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd-~~~~-------~~------~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~ 531 (1096)
+++++..++.|.+|+ .... .. .....+...+..++|+| +|+++++++ .++.|.+|+++++...
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~v~~~~~~~v~v~~~~~g~~~ 246 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS--DGKFAYLINEIGGTVIAFRYADGMLD 246 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTCEEEEEEEETTEEE
T ss_pred EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC--CCCEEEEEcCCCCeEEEEEecCCceE
Confidence 344555689999998 3222 11 11223445678899976 667777777 6899999999865432
Q ss_pred e--EEe---CCCCcEEEEEEcCCCCEEEEEeeccCC-CCeEEEEeCC--CCe--eeEEEcCcCccceEEEEEeCCCCEEE
Q 001343 532 V--DYD---APGHWCTTMLYSADGSRLFSCGTSKDG-DSFLVEWNES--EGT--IKRTYAGFRKKSNGVVQFDTTQNHFL 601 (1096)
Q Consensus 532 ~--~~~---~~~~~i~~l~~s~~~~~l~~~~~~~~~-~~~i~iwd~~--~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~ 601 (1096)
. ... .+......++|+|||++|+++.. . ++.|.+|++. +++ .+..+.. ...+..++|+|+|++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~---~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg~~l~ 321 (361)
T 3scy_A 247 EIQTVAADTVNAQGSGDIHLSPDGKYLYASNR---LKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNGKYLL 321 (361)
T ss_dssp EEEEEESCSSCCCCEEEEEECTTSSEEEEEEC---SSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTSCEEE
T ss_pred EeEEEecCCCCCCCcccEEECCCCCEEEEECC---CCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCCCEEE
Confidence 2 222 22245789999999999987764 2 4789999985 454 4444444 23566799999999998
Q ss_pred EEE-cCCeEEEEeC--CCCeEEEEeecCCCCCCccEEEEe
Q 001343 602 AVG-EDSQIKFWDM--DNVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 602 ~~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
+++ .++.|.+|++ .+++...... ......+.|+.|.
T Consensus 322 ~~~~~~~~v~v~~~d~~~g~~~~~~~-~~~~~~p~~v~~~ 360 (361)
T 3scy_A 322 VACRDTNVIQIFERDQATGLLTDIKK-DIKVDKPVCLKFV 360 (361)
T ss_dssp EEETTTTEEEEEEECTTTCCEEECSC-CEECSSEEEEEEE
T ss_pred EEECCCCCEEEEEEECCCCcEeecce-eeeCCCCeEEEEc
Confidence 887 6789999655 4666554332 1122367788875
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.76 E-value=1e-16 Score=181.54 Aligned_cols=253 Identities=11% Similarity=0.011 Sum_probs=174.8
Q ss_pred cccCCCCEEE-----EEEcCCCCEEEEEEC-CC--eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC
Q 001343 402 FKDVPISVSR-----VAWSPDGNYVGVAFT-KH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473 (1096)
Q Consensus 402 ~~~h~~~V~~-----l~~spd~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~ 473 (1096)
+..|...... .+|||||++|+.++. ++ .|.+||+.+++... ...++...+..+.|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 5556655665 899999999999887 66 48888998876544 2345655566788999999 8899998
Q ss_pred CCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEE----------------------ECCCeEEEEEcCCCCe
Q 001343 474 DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST----------------------AIDGKIKAWLYDTMGS 530 (1096)
Q Consensus 474 d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------------------~~dg~i~iwd~~~~~~ 530 (1096)
++.|++|| .+++....+..+...+....+..++++.+++.. ..++.|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 99999999 777776666666666655555445677777643 2447899999988765
Q ss_pred eeEEeCCCCcEEEEEEcC-CCCEEEEEeeccC--CCCeEEEEeCCCCeeeEEEcCcCc-cceEEEEEeCCCCEEEEEEc-
Q 001343 531 RVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKD--GDSFLVEWNESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGE- 605 (1096)
Q Consensus 531 ~~~~~~~~~~i~~l~~s~-~~~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~- 605 (1096)
.. +..+...+..+.|+| ||+.|+.+..... ....|+++|..++... .+..+.. ..+....|+|+|+.|+..+.
T Consensus 181 ~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 181 TV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp EE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred EE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecC
Confidence 44 334455789999999 9999988764211 1447888888766543 3333332 25667899999997766442
Q ss_pred CC----eEEEEeCCCCeEEEEeecCCCC---CCccEEEEeCCCCEEEEE---------ECCCcEEEEEcCCC
Q 001343 606 DS----QIKFWDMDNVNILTSTDAEGGL---PNLPRLRFSKEGNLLAVT---------TADNGFKILANAIG 661 (1096)
Q Consensus 606 dg----~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~---------~~dg~i~iwd~~~~ 661 (1096)
++ .|++||+.+++........... .....+.|+|||+.|+.. ..+..|.+||+.++
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 22 3999999998754433322100 012334799999888754 44568999999876
No 164
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.75 E-value=8.4e-17 Score=183.20 Aligned_cols=244 Identities=13% Similarity=0.022 Sum_probs=173.2
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCc----------ccc--ceeecccccCEEEEEEecCCCcEEEE----
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND----------LRQ--HSQIDAHVGAVNDLAFAYPNKLLCVV---- 469 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~----------~~~--~~~l~~h~~~v~~l~~s~d~~~~~l~---- 469 (1096)
...++.+++++++.++++++.++ +++|+...-.. +.. ......|.+.|++++|+|+++ +|+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~--~lav~~~ 112 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNL--TLSACMM 112 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSC--EEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCC--EEEEEEe
Confidence 34688999999999999999887 88987642110 000 001123567899999999999 777
Q ss_pred EEeCCCcEEEEE-cCC--------ce---EEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC
Q 001343 470 TCGDDKLIKVWE-LSG--------RK---LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537 (1096)
Q Consensus 470 s~s~d~~i~iwd-~~~--------~~---~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 537 (1096)
+|+.|++|++|| .++ +. +..+.+|...|.+++|+|. ++.+|++++.||+|++||+++.........|
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~-~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~ 191 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT-VPSMVAVCLADGSIAVLQVTETVKVCATLPS 191 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSS-CTTEEEEEETTSCEEEEEESSSEEEEEEECG
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCC-CCCEEEEEECCCeEEEEEcCCCcceeeccCC
Confidence 788999999999 443 22 4566789999999999885 2579999999999999999988666666677
Q ss_pred CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc------cceEEEEEeCCCCEEEEEE-cCC---
Q 001343 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK------KSNGVVQFDTTQNHFLAVG-EDS--- 607 (1096)
Q Consensus 538 ~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~-~dg--- 607 (1096)
...|.+++|+|+|++|++++. ++.|++||.+ ++....+..+.. ..+.+++|++++.++++.+ .+|
T Consensus 192 ~~~v~~v~wspdg~~lasgs~----dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~ 266 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGKQ----NGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE 266 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEET----TSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred CCceeEEEEcCCCCEEEEEcC----CCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence 789999999999999999987 9999999998 666666654422 2678899999887765533 443
Q ss_pred ---eEEEEeCCCCe-----EEEEeecC-----CCCCCccEEEEeCCCCEEEEEEC-CCcEEEEEc
Q 001343 608 ---QIKFWDMDNVN-----ILTSTDAE-----GGLPNLPRLRFSKEGNLLAVTTA-DNGFKILAN 658 (1096)
Q Consensus 608 ---~i~iwd~~~~~-----~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~ 658 (1096)
.+++|++.... ....+... .....-..+.+-++.+++++++. .+.|.++..
T Consensus 267 ~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 267 TSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp SCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred CCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 38999997642 11222111 11112222333366666666654 444666553
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.75 E-value=3.7e-16 Score=174.70 Aligned_cols=246 Identities=10% Similarity=0.059 Sum_probs=171.6
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEcc-CCCccccceeecccccCEEEEEEecCCCcEEEEEEe------------
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYA-GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG------------ 472 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s------------ 472 (1096)
...+..++|+|||++|++++.+ .|.+|++. +++..... ....+ +.+.+++|+|||+.+++++++
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~-~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA-SHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE-EEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEee-EeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 3467889999999999999888 99999997 66543211 11111 235668999999842344543
Q ss_pred -CCCcEEEEE-c-CCceEEEee----CCCCCeEEEEeeecCCCcEEEEEEC-CCeEEEEEcC-CCCeee--EEeC--CCC
Q 001343 473 -DDKLIKVWE-L-SGRKLFNFE----GHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYD-TMGSRV--DYDA--PGH 539 (1096)
Q Consensus 473 -~d~~i~iwd-~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~-~~~~~~--~~~~--~~~ 539 (1096)
.++++.+|+ . +|+....+. .+...+.+++|+| +|+++++++. ++.|++|+++ +++... .+.. +..
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~ 193 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD 193 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence 689999999 4 566554443 2456789999976 6677777664 6899999998 555432 2332 356
Q ss_pred cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC--CCeee---EEEcCcC----c-c-------ceEEEE-EeCCCCEEE
Q 001343 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES--EGTIK---RTYAGFR----K-K-------SNGVVQ-FDTTQNHFL 601 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~--~~~~~---~~~~~~~----~-~-------~i~~~~-~~~~~~~l~ 601 (1096)
.+..++|+|+|++++++.. .++.+.+|++. +++.. ..+.... . . .+..++ |+|+|++|+
T Consensus 194 ~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp CEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred CCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 7899999999999988763 26788998764 56543 2222111 1 1 367799 999999988
Q ss_pred EEEcC-C-----eEEEEeCC-CCeEEEE---eecCCCCCCccEEEEeC---CCCEEEEEECC-CcEEEEEcCCC
Q 001343 602 AVGED-S-----QIKFWDMD-NVNILTS---TDAEGGLPNLPRLRFSK---EGNLLAVTTAD-NGFKILANAIG 661 (1096)
Q Consensus 602 ~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~~~~s~---~~~~l~~~~~d-g~i~iwd~~~~ 661 (1096)
++..+ + .|.+|++. +++.... ...... .+..++|+| +|++|++++.+ +.|.+|++...
T Consensus 271 v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~--~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS--GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC--CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC--CcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 76643 2 89999996 5665432 222222 567899999 89999998864 89999998654
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.71 E-value=1.6e-15 Score=169.51 Aligned_cols=250 Identities=7% Similarity=0.091 Sum_probs=169.3
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecC-CCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE-
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELA-MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY- 420 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~- 420 (1096)
+...+..++|+|+|+ +|++++.+ .|.+|++. +++...... ...+ +.+.+++|+|||++
T Consensus 38 ~~~~~~~~a~spdg~-~l~~~~~~-~v~~~~~~~~g~~~~~~~-----------------~~~~-g~~~~~~~spdg~~l 97 (365)
T 1jof_A 38 QDEPISWMTFDHERK-NIYGAAMK-KWSSFAVKSPTEIVHEAS-----------------HPIG-GHPRANDADTNTRAI 97 (365)
T ss_dssp TTCCCSEEEECTTSS-EEEEEEBT-EEEEEEEEETTEEEEEEE-----------------EECC-SSGGGGCTTSCCEEE
T ss_pred CCCCCcEEEECCCCC-EEEEEccc-eEEEEEECCCCCEEEeeE-----------------eecC-CCCccEEECCCCCEE
Confidence 445789999999999 57777777 99999997 665432100 0111 12456899999994
Q ss_pred -EEEEE-------------CCCeEEEEEccC-CCccccceeec-ccccCEEEEEEecCCCcEEEEEEe-CCCcEEEEE-c
Q 001343 421 -VGVAF-------------TKHLIQLYSYAG-SNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-L 482 (1096)
Q Consensus 421 -l~s~~-------------~dg~i~vwd~~~-~~~~~~~~~l~-~h~~~v~~l~~s~d~~~~~l~s~s-~d~~i~iwd-~ 482 (1096)
++++. .++.+.+|++.. ++.......+. .+...+.+++|+|||+ +|++++ .++.|++|| .
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~--~l~~~~~~~~~v~~~~~~ 175 (365)
T 1jof_A 98 FLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET--YLYSADLTANKLWTHRKL 175 (365)
T ss_dssp EEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS--EEEEEETTTTEEEEEEEC
T ss_pred EEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC--EEEEEcCCCCEEEEEEEC
Confidence 55553 689999999974 54433221111 2556899999999999 566554 468999999 5
Q ss_pred -CCceE--EEee--CCCCCeEEEEeeecCCCcEEEEEEC-CCeEEEEEcCC--CCeee---EEe-CC------CC-----
Q 001343 483 -SGRKL--FNFE--GHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDT--MGSRV---DYD-AP------GH----- 539 (1096)
Q Consensus 483 -~~~~~--~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~--~~~~~---~~~-~~------~~----- 539 (1096)
+|+.. ..+. .|...+..++|+| +|+++++++. ++.|.+|+++. ++... .+. .. ..
T Consensus 176 ~~g~~~~~~~~~~~~~g~~p~~~~~sp--dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 253 (365)
T 1jof_A 176 ASGEVELVGSVDAPDPGDHPRWVAMHP--TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKG 253 (365)
T ss_dssp TTSCEEEEEEEECSSTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSB
T ss_pred CCCCEEEeeeEecCCCCCCCCEeEECC--CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccc
Confidence 56643 2333 2456788999976 6778877775 78999998763 33321 121 11 11
Q ss_pred -cEEEEE-EcCCCCEEEEEeeccC--CCCeEEEEeCC-CCeeeEE---EcCcCccceEEEEEeC---CCCEEEEEEc-CC
Q 001343 540 -WCTTML-YSADGSRLFSCGTSKD--GDSFLVEWNES-EGTIKRT---YAGFRKKSNGVVQFDT---TQNHFLAVGE-DS 607 (1096)
Q Consensus 540 -~i~~l~-~s~~~~~l~~~~~~~~--~~~~i~iwd~~-~~~~~~~---~~~~~~~~i~~~~~~~---~~~~l~~~~~-dg 607 (1096)
.+..++ |+|||++|+++....+ ..+.|.+|++. +++.... ...+.. ....++|+| +|++|++++. ++
T Consensus 254 ~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~-~~~~~a~sp~~~dg~~l~v~~~~~~ 332 (365)
T 1jof_A 254 LYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS-GGHSNAVSPCPWSDEWMAITDDQEG 332 (365)
T ss_dssp SEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC-CTTCCCEEECTTCTTEEEEECSSSC
T ss_pred cccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC-CcccceecCCCcCCCEEEEEEcCCC
Confidence 488999 9999999887654211 11289999986 6665432 322322 344588999 8999999886 48
Q ss_pred eEEEEeCCCC
Q 001343 608 QIKFWDMDNV 617 (1096)
Q Consensus 608 ~i~iwd~~~~ 617 (1096)
.|.+|+++..
T Consensus 333 ~v~v~~~~~~ 342 (365)
T 1jof_A 333 WLEIYRWKDE 342 (365)
T ss_dssp EEEEEEEETT
T ss_pred eEEEEEEchh
Confidence 9999998766
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.71 E-value=3.2e-15 Score=165.97 Aligned_cols=312 Identities=10% Similarity=0.100 Sum_probs=200.0
Q ss_pred CCcEEEEEE------CCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeec------cCCCCeEEEEeCCCC
Q 001343 507 NIQFIFSTA------IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNESEG 574 (1096)
Q Consensus 507 ~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~------~~~~~~i~iwd~~~~ 574 (1096)
++.++++.. .|+.|.+||..+++....+.....+ .++|+|||++++++... ...++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 445666554 3789999999988877666655444 89999999999988631 012567999999999
Q ss_pred eeeEEEcCcC-----ccceEEEEEeCCCCEEEEEEc--CCeEEEEeCCCCeEEEE-eecCCCCCCccEEEEeCCC-CEEE
Q 001343 575 TIKRTYAGFR-----KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTS-TDAEGGLPNLPRLRFSKEG-NLLA 645 (1096)
Q Consensus 575 ~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~~~-~~l~ 645 (1096)
+.+.++.... ......++++|+|++++++.. ++.|.+||+.+++.+.. +.... ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 9988876431 113445899999999999874 58999999999988887 65432 2335677765 6788
Q ss_pred EEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCC
Q 001343 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM 725 (1096)
Q Consensus 646 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d 725 (1096)
+.+.||.+.+|+.....+......
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~-------------------------------------------------------- 191 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSR-------------------------------------------------------- 191 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEE--------------------------------------------------------
T ss_pred EECCCCcEEEEEECCCCcEeeecc--------------------------------------------------------
Confidence 889999999998754212110000
Q ss_pred CCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCcee
Q 001343 726 DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKAT 805 (1096)
Q Consensus 726 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~ 805 (1096)
...+|+.. ..+ ..+.+++++..++..+.++.+.++++..... .
T Consensus 192 -----------~~~~~~~~-------------------~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-----~- 234 (361)
T 2oiz_A 192 -----------SKQMFSVK-------------------DDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEV-----K- 234 (361)
T ss_dssp -----------CCCCSCTT-------------------TSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSC-----E-
T ss_pred -----------ccceEcCC-------------------CCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCc-----e-
Confidence 00011110 000 0111134444455455566677776532110 0
Q ss_pred eecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec------------CCeEEEEEcccceEEEeecCCCC
Q 001343 806 ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT------------GGKISLFNMMTFKVMTTFMSPPP 873 (1096)
Q Consensus 806 ~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~------------dg~v~iwd~~~~~~~~~~~~h~~ 873 (1096)
.+..|+........... .......++|+||++.++++. .+.|.+||+.+++.+.++..+.
T Consensus 235 ---~~~~~~~~~~~~~~~~~----~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~- 306 (361)
T 2oiz_A 235 ---VDGPWSLLNDEDKAKNW----VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD- 306 (361)
T ss_dssp ---EEEEEESCCHHHHHTTC----EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-
T ss_pred ---ecccccccCcccccccc----ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-
Confidence 00111111100000000 011222478999987776643 2479999999999999998877
Q ss_pred CeeEEEEecCCCcEEEEeeCCCeEEEEeeccc--eeeeeeccccccccceeeecCCCCCCCCCceEEEecCCc
Q 001343 874 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD--ELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV 944 (1096)
Q Consensus 874 ~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~ 944 (1096)
+.+++|+| |+++|+++.. ++|.+||..++ + .++.+..... ....++|+|||.
T Consensus 307 -p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~---------------~~~~i~~~G~-~P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 -ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPK---------------LLRTIEGAAE-ASLQVQFHPVGG 360 (361)
T ss_dssp -CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCE---------------EEEEETTSCS-SEEEEEECCCSC
T ss_pred -eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcce---------------eeEEeccCCC-CcEEEEecCCCC
Confidence 99999999 8999998887 99999999998 6 3444322222 567899999985
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.71 E-value=6.4e-16 Score=175.45 Aligned_cols=282 Identities=10% Similarity=-0.035 Sum_probs=181.1
Q ss_pred eEEEEEcCCCCcEEEEEeCC--CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001343 347 VISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 347 V~~v~fsp~g~~llasg~~d--g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 424 (1096)
+.+++|||||++++++...+ ..|.+||+.+++.... ..++......+.|||||++|+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-------------------~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-------------------TEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC-------------------CCSSCBCTTTCEECTTSSEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe-------------------ecCCCCccccceECCCCCEEEEE
Confidence 78899999999644444333 3788889888765421 12222223347899999999999
Q ss_pred ECCCeEEEEEccCCCccccceeecccccCEEE-------------------EEEecCCCcEEEEEE-----eCCCcEEEE
Q 001343 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVND-------------------LAFAYPNKLLCVVTC-----GDDKLIKVW 480 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~-------------------l~~s~d~~~~~l~s~-----s~d~~i~iw 480 (1096)
+.++.|.+||+.+++... ....+...... +.|+|+++ .++.+ ..+..|++|
T Consensus 99 ~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~--~~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS--WEKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS--HHHHHHHHHTCCCEEEEEE
T ss_pred EcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCc--ceeeeeeccCCCcceEEEE
Confidence 999999999999876433 12223332222 34677777 33332 456789999
Q ss_pred E-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC------CeEEEEEcCCCCeeeEEeCC-CCcEEEEEEcCCCCE
Q 001343 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSR 552 (1096)
Q Consensus 481 d-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~ 552 (1096)
| .+++... +..+...+..+.|+|. ++..|+..+.+ ..|.+||+............ ...+..++|+|+|+.
T Consensus 174 d~~~g~~~~-~~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~ 251 (396)
T 3c5m_A 174 DIETGELEV-IHQDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA 251 (396)
T ss_dssp ETTTCCEEE-EEEESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred ECCCCcEEe-eccCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence 9 5665543 3456677889999762 34556655543 35788887654433222211 235888999999998
Q ss_pred EEEEeeccC-CCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeC-CCCEEEEEE----------------cCCeEEEEeC
Q 001343 553 LFSCGTSKD-GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT-TQNHFLAVG----------------EDSQIKFWDM 614 (1096)
Q Consensus 553 l~~~~~~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~----------------~dg~i~iwd~ 614 (1096)
|+..+.... ..+.|++||+.+++........ ... ..|+| +|+.+++++ .++.|++||+
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 252 MAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp EEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred EEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 887754211 1245999999988765443222 123 78999 999888754 3478999999
Q ss_pred CCCeEEEEeecCCCC--------CCccEEEEeCCCCEEEEEEC-CCcEEEEEc
Q 001343 615 DNVNILTSTDAEGGL--------PNLPRLRFSKEGNLLAVTTA-DNGFKILAN 658 (1096)
Q Consensus 615 ~~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~ 658 (1096)
.+++........... ..+..++|+|+|+.|+.++. ++...+|.+
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 328 KAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp TTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 887754333222110 02466899999998887775 555555544
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.70 E-value=4.4e-15 Score=164.83 Aligned_cols=285 Identities=9% Similarity=0.077 Sum_probs=192.2
Q ss_pred CCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC----------CCeEEEEE
Q 001343 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT----------KHLIQLYS 434 (1096)
Q Consensus 365 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~----------dg~i~vwd 434 (1096)
.|+.|.+||..+++.+.. +..+..+ .++|+|||++|+++.. ++.|.+||
T Consensus 29 ~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d 87 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWD 87 (361)
T ss_dssp GGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEE
T ss_pred ccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEE
Confidence 378999999999887643 2333334 8999999999998862 56899999
Q ss_pred ccCCCccccceeecc---cccCEEEEEEecCCCcEEEEEEe--CCCcEEEEE-cCCceEEE-eeCCCCCeEEEEeeecCC
Q 001343 435 YAGSNDLRQHSQIDA---HVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE-LSGRKLFN-FEGHEAPVYSICPHHKEN 507 (1096)
Q Consensus 435 ~~~~~~~~~~~~l~~---h~~~v~~l~~s~d~~~~~l~s~s--~d~~i~iwd-~~~~~~~~-~~~~~~~v~~~~~~~~~~ 507 (1096)
..+++.+..+..... +......++|+|||+ +|+++. .+++|.+|| .+++.+.. +.. . ....+.+.|.+
T Consensus 88 ~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~- 162 (361)
T 2oiz_A 88 ADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNR- 162 (361)
T ss_dssp TTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTS-
T ss_pred CcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCC-
Confidence 998776664322111 234567899999999 566554 368999999 88877776 542 2 22334454543
Q ss_pred CcEEEEEECCCeEEEEEcCCCCeee-E------EeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee--eE
Q 001343 508 IQFIFSTAIDGKIKAWLYDTMGSRV-D------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--KR 578 (1096)
Q Consensus 508 ~~~l~s~~~dg~i~iwd~~~~~~~~-~------~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~ 578 (1096)
...+++.+.||.+.+|++....... . +.....+ ..+.+++++..++..+. ++.++++|+..... ..
T Consensus 163 ~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~----~~~v~v~d~~~~~~~~~~ 237 (361)
T 2oiz_A 163 PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSY----YGNVYSADFSGDEVKVDG 237 (361)
T ss_dssp SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBT----TSEEEEEECSSSSCEEEE
T ss_pred CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeC----CCeEEEEEecCCCceecc
Confidence 3678889999999999987533322 1 1111111 12334567777776654 77899999875432 22
Q ss_pred EEcCcC------c---cceEEEEEeCCCCEEEEEEc-----------CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe
Q 001343 579 TYAGFR------K---KSNGVVQFDTTQNHFLAVGE-----------DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 579 ~~~~~~------~---~~i~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
.+.... . .....++++|+++.++++.. .+.|.+||+.+++.+..+..+. +..++|+
T Consensus 238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~----p~~ia~s 313 (361)
T 2oiz_A 238 PWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD----ALSMTID 313 (361)
T ss_dssp EEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT----CCEEEEE
T ss_pred cccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC----eeEEEEC
Confidence 221110 0 01112689999888887653 3589999999999999988664 7999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCc-cccccccCCCcccccCcceeEEeecCCC
Q 001343 639 KEGNLLAVTTADNGFKILANAIGL-RSLRAVENPPFEALRTPIESVALKVSAS 690 (1096)
Q Consensus 639 ~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 690 (1096)
|+|++|++++. +.|.+||..++. +.+..+... -.....++++|+|+
T Consensus 314 pdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~-----G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 314 QQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGA-----AEASLQVQFHPVGG 360 (361)
T ss_dssp TTTTEEEEECS-SCEEEEECSSSSCEEEEEETTS-----CSSEEEEEECCCSC
T ss_pred CCCCEEEEeCC-CeEEEEECCCCcceeeEEeccC-----CCCcEEEEecCCCC
Confidence 99999998887 999999998871 233333221 12245688898875
No 170
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=1.6e-13 Score=159.78 Aligned_cols=328 Identities=11% Similarity=0.137 Sum_probs=216.0
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCC--CCeEEEEeecCCCCCCccEEEEe--
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD--NVNILTSTDAEGGLPNLPRLRFS-- 638 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s-- 638 (1096)
++.|.++|..+++.+.++.... ....+.++|+|+++++++.|+.|.+||+. +++.+..+.... ....++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g~--~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---~P~~ia~s~~ 250 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---EARSIETSKM 250 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---EEEEEEECCS
T ss_pred CCeEEEEECCCCeEEEEEeCCC--CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---CCceeEEccc
Confidence 8899999999999998887543 45579999999999999999999999996 778887776533 45789999
Q ss_pred --CCCCEEEEEEC-CCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcc
Q 001343 639 --KEGNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII 715 (1096)
Q Consensus 639 --~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~ 715 (1096)
|||++++++.. ++.|.++|..+. +.+..+...... .+
T Consensus 251 ~~pDGk~l~v~n~~~~~v~ViD~~t~-~~~~~i~~~~~~------------~~--------------------------- 290 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQYVIMDGETL-EPKKIQSTRGMT------------YD--------------------------- 290 (567)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTC-CEEEEEECCEEC------------TT---------------------------
T ss_pred cCCCCCEEEEEEccCCeEEEEECCCC-cEEEEEeccccc------------cc---------------------------
Confidence 69988887765 589999997665 222222110000 00
Q ss_pred cCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeec-CCeEEEeecc
Q 001343 716 NGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWH 794 (1096)
Q Consensus 716 ~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~v~vw~~~ 794 (1096)
+ .... ....+..+..++++..++.... .|.|.++++.
T Consensus 291 --------------------~--------------~~~~--------p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~ 328 (567)
T 1qks_A 291 --------------------E--------------QEYH--------PEPRVAAILASHYRPEFIVNVKETGKILLVDYT 328 (567)
T ss_dssp --------------------T--------------CCEE--------SCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred --------------------c--------------cccc--------CCCceEEEEEcCCCCEEEEEecCCCeEEEEecC
Confidence 0 0000 1225666777777665554444 5888887763
Q ss_pred CCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec--CCeEEEEEcccceEEEeecC--
Q 001343 795 RNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMS-- 870 (1096)
Q Consensus 795 ~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~--dg~v~iwd~~~~~~~~~~~~-- 870 (1096)
.... +.+. .+. .......+.|+|||++++++. +++|.++|+.+++.+..+..
T Consensus 329 ~~~~-----------~~v~----------~i~---~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg 384 (567)
T 1qks_A 329 DLNN-----------LKTT----------EIS---AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG 384 (567)
T ss_dssp CSSE-----------EEEE----------EEE---CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred CCcc-----------ceee----------eee---ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccC
Confidence 3110 0000 011 233455789999999988776 58899999999998776643
Q ss_pred ---CCCCeeEEEEecCC-CcEEEEee-CCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcE
Q 001343 871 ---PPPASTFLAFHPQD-NNIIAIGT-EDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR 945 (1096)
Q Consensus 871 ---h~~~i~~l~~s~~d-~~~l~s~~-~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~ 945 (1096)
|.+....+ ++| + +..++++. .+++|.+++..+... .....+.++.+.+... .-..++++|++++
T Consensus 385 ~~Phpg~g~~~-~~p-~~g~v~~t~~~g~~~Vsvid~~~~~~--------~~~~~kvv~~i~~~g~-g~~~i~~~p~~~~ 453 (567)
T 1qks_A 385 QTPHPGRGANF-VHP-TFGPVWATSHMGDDSVALIGTDPEGH--------PDNAWKILDSFPALGG-GSLFIKTHPNSQY 453 (567)
T ss_dssp SSBCCTTCEEE-EET-TTEEEEEEEBSSSSEEEEEECCTTTC--------TTTBTSEEEEEECSCS-CCCCEECCTTCSE
T ss_pred cCCCCccceee-ECC-CCCcEEEeCCCCCCeEEEecCCCCCC--------ccccCEEEEEEecCCC-CCEEEEeCCCCCe
Confidence 33222222 578 5 44445543 568999999887320 0000112333332221 3355789999999
Q ss_pred EEEEe--------cceEEEEEcccc-----eec-cccc-------cCCCCCCCceEEEEeeCCcEEEEEec-----CCcE
Q 001343 946 MLVVH--------ETQLAIYDASKM-----ERI-RQWT-------PQDALSAPISCAVYSCNSQLVFATFC-----DGNI 999 (1096)
Q Consensus 946 l~~~~--------d~~i~iwd~~~~-----~~~-~~~~-------~~~~~~~~i~~l~~s~dg~~la~~~~-----dg~i 999 (1096)
|.+.. ..+|.++|+.+. ... ..+. +.. ...+..+.|+++|+++.++.. ++.|
T Consensus 454 l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i 531 (567)
T 1qks_A 454 LYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEG--QPRVVQGEFNKDGTEVWFSVWNGKDQESAL 531 (567)
T ss_dssp EEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSS--CCEEEEEEECTTSSEEEEEEECCTTSCCEE
T ss_pred EEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCC--CcceEeeeECCCCCEEEEEeecCCCCCCcE
Confidence 99943 459999999877 211 1111 111 456889999999998776643 7899
Q ss_pred EEEecCCCceeEEEc
Q 001343 1000 GVFDADTLRLRCYIA 1014 (1096)
Q Consensus 1000 ~vwd~~~~~~~~~~~ 1014 (1096)
.|+|..++++...+.
T Consensus 532 ~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 532 VVVDDKTLELKHVIK 546 (567)
T ss_dssp EEEETTTTEEEEEEC
T ss_pred EEEECCCceEEEEeC
Confidence 999999999887776
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=2e-14 Score=157.89 Aligned_cols=248 Identities=14% Similarity=0.103 Sum_probs=183.8
Q ss_pred CceEEEEEcCCCCcEEEEEeCC------------------------CeEEEEecCCCCeeecccceeecccccCcccccc
Q 001343 345 STVISMDFHPSHQTLLLVGSSN------------------------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~d------------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1096)
+.|.+|+++|+|+ ++++.+.+ +.|.+||..+++.+..
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------ 84 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence 5799999999998 67777666 4799999988876532
Q ss_pred ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCC-ccccceee------cccccCEEEEEEec-CCCcEEEEEEe
Q 001343 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN-DLRQHSQI------DAHVGAVNDLAFAY-PNKLLCVVTCG 472 (1096)
Q Consensus 401 ~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~l------~~h~~~v~~l~~s~-d~~~~~l~s~s 472 (1096)
.-.++-.....++++|+|+++++...++.|++||.+... .+..+... .++-.....++|+| ++. ++++.+
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv~d~ 162 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFVSDG 162 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC--EEEEEC
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe--EEEEeC
Confidence 012345678999999999988888888999999986542 23211000 24555789999999 677 777776
Q ss_pred -CCCcEEEEEcCCceEEEeeCC----------CCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe--CCCC
Q 001343 473 -DDKLIKVWELSGRKLFNFEGH----------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGH 539 (1096)
Q Consensus 473 -~d~~i~iwd~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~ 539 (1096)
.++.|++||.+|+.+..+... -.....+++.+. .+.++++...++.|++|+.++++....+. ....
T Consensus 163 ~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~ 241 (329)
T 3fvz_A 163 YCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHASFGR 241 (329)
T ss_dssp SSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTT
T ss_pred CCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEeccccCC
Confidence 699999999888888777432 233788999763 15777888889999999998777776664 3445
Q ss_pred cEEEEEEcCCCCEEEEEee---ccCCCCeEEEEeCCCCeeeEEEc---CcCccceEEEEEeCCCCEEEEEEcCCeEEEEe
Q 001343 540 WCTTMLYSADGSRLFSCGT---SKDGDSFLVEWNESEGTIKRTYA---GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~---~~~~~~~i~iwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 613 (1096)
.+..++++| +..+.+.+. .......+++|+..+++.+..+. ++.. ....++++|+|..+++...++.|++|+
T Consensus 242 ~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 242 NVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp CEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred CcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 788999999 433333321 01225689999999999998884 3333 577899999997777777899999999
Q ss_pred CCC
Q 001343 614 MDN 616 (1096)
Q Consensus 614 ~~~ 616 (1096)
+..
T Consensus 320 ~~~ 322 (329)
T 3fvz_A 320 LTE 322 (329)
T ss_dssp EEE
T ss_pred CCc
Confidence 753
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.67 E-value=5.6e-15 Score=180.13 Aligned_cols=286 Identities=12% Similarity=0.019 Sum_probs=189.0
Q ss_pred cCCCceEEEEEcCCCCcEEEEE--eCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEE---------
Q 001343 342 HQGSTVISMDFHPSHQTLLLVG--SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS--------- 410 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg--~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--------- 410 (1096)
.|...|..++|++++- +++++ +.++...||....+..... +..|...+.
T Consensus 21 ~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~~~~~ 80 (662)
T 3azo_A 21 SRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFEYSGF 80 (662)
T ss_dssp HTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGGTCCC
T ss_pred hcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccccCCc
Confidence 3777899999998865 46666 4588999999644433221 333444444
Q ss_pred EEEEc--CCCCE-EEEEEC-CCeEEEEEcc--C-CCccccceeecc-----cccCEEEEEEecCCCcEEEEEEeCC----
Q 001343 411 RVAWS--PDGNY-VGVAFT-KHLIQLYSYA--G-SNDLRQHSQIDA-----HVGAVNDLAFAYPNKLLCVVTCGDD---- 474 (1096)
Q Consensus 411 ~l~~s--pd~~~-l~s~~~-dg~i~vwd~~--~-~~~~~~~~~l~~-----h~~~v~~l~~s~d~~~~~l~s~s~d---- 474 (1096)
...|+ |||++ |+.++. +..|.+|++. + ++ .. .+.. |...+..++|+|||+ .|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~ 154 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGE 154 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSS
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecccCC
Confidence 45565 99998 776654 4567777765 2 33 33 2444 677899999999999 78877766
Q ss_pred ------CcEEEEEcCC------ceEEEee-CCCCCeEEEEeeecCCCcEEEEEECC--------CeEEEEEcC-CC---C
Q 001343 475 ------KLIKVWELSG------RKLFNFE-GHEAPVYSICPHHKENIQFIFSTAID--------GKIKAWLYD-TM---G 529 (1096)
Q Consensus 475 ------~~i~iwd~~~------~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~-~~---~ 529 (1096)
..|++||..+ .....+. .+...+..++|+| ||++|+.++.+ ..|.+||+. ++ .
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp--DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 155 GPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP--DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp STTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT--TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC--CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 5899999444 4455665 6666778888866 77889887755 379999998 45 3
Q ss_pred eeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCcc-------ceEEEEEeCCCCEEEE
Q 001343 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK-------SNGVVQFDTTQNHFLA 602 (1096)
Q Consensus 530 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~ 602 (1096)
.......+...+..+.|+|||++++++.. ++...|++||..+++.......+... .+..++|++++..+++
T Consensus 233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred cEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 33333444668999999999995555433 22337888888777765444433221 0456888999999999
Q ss_pred EEcCCeEEEE--eCCCCeEEEEeecCCCCCCccEE-EEeCCCCEEEEEECCCc--EEEEEcCCC
Q 001343 603 VGEDSQIKFW--DMDNVNILTSTDAEGGLPNLPRL-RFSKEGNLLAVTTADNG--FKILANAIG 661 (1096)
Q Consensus 603 ~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~dg~--i~iwd~~~~ 661 (1096)
++. +.+++| |..+++ +..+..+.. .+..+ +++++.-.+++++.+.. |.+||+.++
T Consensus 311 ~~~-~~~~l~~~d~~~~~-~~~l~~~~~--~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 311 HGK-GAAVLGILDPESGE-LVDAAGPWT--EWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EBS-SSCEEEEEETTTTE-EEECCSSCC--EEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEc-CccEEEEEECCCCc-EEEecCCCC--eEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 988 998888 555555 555554432 56655 44444334444555544 455565555
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.67 E-value=1.6e-14 Score=176.15 Aligned_cols=251 Identities=10% Similarity=-0.025 Sum_probs=176.6
Q ss_pred ccccccCCCCEEEEEEcCCCCEEEEE--ECCCeEEEEEccCCCccccceeecccccCEE---------EEEEe--cCCCc
Q 001343 399 ASIFKDVPISVSRVAWSPDGNYVGVA--FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVN---------DLAFA--YPNKL 465 (1096)
Q Consensus 399 ~~~~~~h~~~V~~l~~spd~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~---------~l~~s--~d~~~ 465 (1096)
...+.+|...|..++|++++.++++. +.++...||....+...+ .+..|...+. ...|+ |||+
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~- 91 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGG- 91 (662)
T ss_dssp HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSS-
T ss_pred HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCC-
Confidence 34577899999999999887777776 557899999975444333 4556666666 66676 9999
Q ss_pred EE-EEEEeC-CCcEEEEEcC--C-ceEEEeeC-----CCCCeEEEEeeecCCCcEEEEEECC----------CeEEEEEc
Q 001343 466 LC-VVTCGD-DKLIKVWELS--G-RKLFNFEG-----HEAPVYSICPHHKENIQFIFSTAID----------GKIKAWLY 525 (1096)
Q Consensus 466 ~~-l~s~s~-d~~i~iwd~~--~-~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~d----------g~i~iwd~ 525 (1096)
. |+.++. +..|.+|+.. + .....+.. |...+.+++|+| ||+.|++++.+ ..|.+||+
T Consensus 92 -~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~ 168 (662)
T 3azo_A 92 -PLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLAAVPL 168 (662)
T ss_dssp -CEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET--TTTEEEEEEEEECSSSTTCEEEEEEEEET
T ss_pred -eEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC--CCCEEEEEEecccCCCCCCceeEEEEEEC
Confidence 5 555443 5566666644 3 55566665 566788899977 67889888877 58999999
Q ss_pred CCC-----CeeeEEe-CCCCcEEEEEEcCCCCEEEEEeeccC----CCCeEEEEeCC-CC---eeeEEEcCcCccceEEE
Q 001343 526 DTM-----GSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKD----GDSFLVEWNES-EG---TIKRTYAGFRKKSNGVV 591 (1096)
Q Consensus 526 ~~~-----~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~~~~----~~~~i~iwd~~-~~---~~~~~~~~~~~~~i~~~ 591 (1096)
.+. .....+. .+...+..++|||||++|+.++.+.. ....|++||+. ++ +......++.. .+..+
T Consensus 169 ~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~-~~~~~ 247 (662)
T 3azo_A 169 DGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE-AIAQA 247 (662)
T ss_dssp TSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB-CEEEE
T ss_pred CCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc-eEcce
Confidence 872 2334444 45567888999999999998775321 12589999998 57 44444444333 77889
Q ss_pred EEeCCCCEEEEEEcCC--eEEEEeCCCCeEEEEeecCCCC------CCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 592 QFDTTQNHFLAVGEDS--QIKFWDMDNVNILTSTDAEGGL------PNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 592 ~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
.|+|+|++++++..++ .|++||..+++.......+... ..+..++|+|++.++++++. +.++||.+
T Consensus 248 ~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 248 EWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred EECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 9999999777777777 6777777677655444332211 01467888888888888888 88888854
No 174
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.65 E-value=4e-14 Score=157.29 Aligned_cols=263 Identities=10% Similarity=0.107 Sum_probs=178.3
Q ss_pred CCceEEEEEcCCCCcEEEEE--------eCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 344 GSTVISMDFHPSHQTLLLVG--------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg--------~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
-..+...++ ||++++.+. ..++.|.+||+.+++... + ..+.+++||
T Consensus 14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~S 67 (347)
T 2gop_A 14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRIS 67 (347)
T ss_dssp SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEEC
T ss_pred eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEEC
Confidence 346788888 888644442 126689999998876431 2 468899999
Q ss_pred CCCCEEEEEECC---C--eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC-----------------
Q 001343 416 PDGNYVGVAFTK---H--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD----------------- 473 (1096)
Q Consensus 416 pd~~~l~s~~~d---g--~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~----------------- 473 (1096)
|||++||.++.+ + .|.+|++.+++... +..+.. +..++|+|||+ .|+.++.
T Consensus 68 pDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~ 140 (347)
T 2gop_A 68 PDGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPAW 140 (347)
T ss_dssp TTSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEEECCCC---------CCCC
T ss_pred CCCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEccccee
Confidence 999999987754 3 47888888765433 333344 99999999999 5666553
Q ss_pred ----------CCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCC-------eEEEEEcCCCCeeeEEe
Q 001343 474 ----------DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG-------KIKAWLYDTMGSRVDYD 535 (1096)
Q Consensus 474 ----------d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~ 535 (1096)
...|++|| .+++.+..+.. . .+..+.|+| +| +++++..++ ...+|.++ ......+.
T Consensus 141 ~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp--dg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~ 214 (347)
T 2gop_A 141 FDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR--DK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMF 214 (347)
T ss_dssp ---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET--TE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEE
T ss_pred ecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC--Ce-EEEEEecccccccccccccEEEeC-CCceEEec
Confidence 25789999 56665355554 3 788888876 66 777776542 45566555 33333333
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeeccC----CCCeEEEEeCCCCeeeEEEcCcCccceEE-EEEeCCCCEEEEEEcCCeEE
Q 001343 536 APGHWCTTMLYSADGSRLFSCGTSKD----GDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVGEDSQIK 610 (1096)
Q Consensus 536 ~~~~~i~~l~~s~~~~~l~~~~~~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~ 610 (1096)
.+ ..+..+ +|+|+.|+.++.... ....|++|| +++.......+.. .+.. +.|+ ++ .+++++.++.++
T Consensus 215 ~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 215 EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR-GVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS-EEEEEEEET-TE-EEEEEEETTEEE
T ss_pred cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc-ccCCccEEc-Cc-EEEEEecCCcEE
Confidence 33 444444 999999987764221 135788998 5655444444433 5665 8898 88 888899999999
Q ss_pred EEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcE-EEEEcC
Q 001343 611 FWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF-KILANA 659 (1096)
Q Consensus 611 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i-~iwd~~ 659 (1096)
+| +.+++....... ...|.+++|+| .++++++.++.. .+|.+.
T Consensus 287 l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 287 LY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 99 876665444433 23788999999 677777777665 778775
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.65 E-value=1.5e-13 Score=147.77 Aligned_cols=245 Identities=12% Similarity=0.145 Sum_probs=178.2
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE-cCCCCEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW-SPDGNYV 421 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-spd~~~l 421 (1096)
+-..+.+++++|+|+ ++++.+.++.|.+||.. ++.+.... .. ....+|...+.++++ .++++++
T Consensus 28 ~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~-----~~--------~~~~~~~~~p~~i~~~~~~g~l~ 92 (286)
T 1q7f_A 28 QFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFG-----EC--------GKRDSQLLYPNRVAVVRNSGDII 92 (286)
T ss_dssp CBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEEC-----CB--------SSSTTCBSSEEEEEEETTTTEEE
T ss_pred ccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEec-----cc--------CCCcccccCceEEEEEcCCCeEE
Confidence 445799999999998 78888889999999987 55442200 00 001235567899999 4677766
Q ss_pred EEEEC-CCeEEEEEccCCCccccceeec-ccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEee--CCCCCe
Q 001343 422 GVAFT-KHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE--GHEAPV 497 (1096)
Q Consensus 422 ~s~~~-dg~i~vwd~~~~~~~~~~~~l~-~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~~~~v 497 (1096)
++... ++.|.+|| .+++.+.. +. .+...+.+++++++|+ ++++...++.|.+||.+++.+..+. ++...+
T Consensus 93 v~~~~~~~~i~~~d-~~g~~~~~---~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p 166 (286)
T 1q7f_A 93 VTERSPTHQIQIYN-QYGQFVRK---FGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFP 166 (286)
T ss_dssp EEECGGGCEEEEEC-TTSCEEEE---ECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECTTSCEEEEEECTTTCSSE
T ss_pred EEcCCCCCEEEEEC-CCCcEEEE---ecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcCCCCEEEEeCCCCccCCc
Confidence 66543 78999999 45554442 32 3456789999999998 7888888899999997777777764 344568
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC--CcEEEEEEcCCCCEEEEEeeccCCCC-eEEEEeCCCC
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSRLFSCGTSKDGDS-FLVEWNESEG 574 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~~~~l~~~~~~~~~~~-~i~iwd~~~~ 574 (1096)
.++++.+ ++.++++...++.|++||.. +.....+.... ..+..++++++|+.+++... ++ .|.+||. ++
T Consensus 167 ~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~-~g 238 (286)
T 1q7f_A 167 NGVVVND--KQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQ-DG 238 (286)
T ss_dssp EEEEECS--SSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECT-TS
T ss_pred EEEEECC--CCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECC-CC
Confidence 8999866 56777777789999999974 44444554432 57899999999988777654 54 9999995 56
Q ss_pred eeeEEEcCcCc-cceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC
Q 001343 575 TIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1096)
Q Consensus 575 ~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1096)
+.+..+..+.. ..+..++++|+|+.+++ +.++.|++|+....
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 239 QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 66676655432 24678999999976666 67999999998653
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.64 E-value=1.5e-13 Score=147.81 Aligned_cols=244 Identities=11% Similarity=0.100 Sum_probs=179.0
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcccccee---ecccccCEEEEEEe-cCCCcEEEEEEeC-CCcEE
Q 001343 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ---IDAHVGAVNDLAFA-YPNKLLCVVTCGD-DKLIK 478 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---l~~h~~~v~~l~~s-~d~~~~~l~s~s~-d~~i~ 478 (1096)
++-..+.+++++++|+++++...++.|.+||.+ ++.+..+.. ..+|...+..+++. +++. ++++... ++.|+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEE
Confidence 355679999999999988888889999999987 444332111 02355678999995 6665 5555533 89999
Q ss_pred EEEcCCceEEEeeC-CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe--CCCCcEEEEEEcCCCCEEEE
Q 001343 479 VWELSGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 479 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~~ 555 (1096)
+||.+++.+..+.. +...+.++++.+ ++.++++...++.|.+||.. +.....+. .+...+..++++++|+.+++
T Consensus 104 ~~d~~g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 104 IYNQYGQFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp EECTTSCEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred EECCCCcEEEEecCccCCCceEEEEeC--CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 99977887777643 345688899866 66777777788999999964 34444443 23346899999999987766
Q ss_pred EeeccCCCCeEEEEeCCCCeeeEEEcCcC-ccceEEEEEeCCCCEEEEEEcCC-eEEEEeCCCCeEEEEeecCCCCCCcc
Q 001343 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDS-QIKFWDMDNVNILTSTDAEGGLPNLP 633 (1096)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1096)
... ++.|++||. +++.+..+.... ...+..++++++|+.+++...++ .|.+|+. +++.+..+..+.....+.
T Consensus 181 ~~~----~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 254 (286)
T 1q7f_A 181 DNR----AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCF 254 (286)
T ss_dssp EGG----GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEE
T ss_pred ECC----CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcce
Confidence 554 789999997 456666665432 12577899999998888877775 9999996 566666666554433577
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 634 RLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
+++++|+|+++++ +.|+.|++|+...
T Consensus 255 ~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 255 DVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred eEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 9999999987776 6799999999754
No 177
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.64 E-value=8e-13 Score=153.83 Aligned_cols=272 Identities=13% Similarity=0.087 Sum_probs=195.4
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcc--
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYA-- 436 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~-- 436 (1096)
++++...++.|.++|..+++.+.+ +. ....+..+.|||||+++++++.|+.|.+||+.
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~-------------------i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~ 228 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTV-------------------LD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK 228 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEE-------------------EE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred EEEEeCCCCeEEEEECCCCeEEEE-------------------Ee-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 677778899999999999987753 11 23357799999999999999999999999995
Q ss_pred CCCccccceeecccccCEEEEEEe----cCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeC----------CCC-CeEEE
Q 001343 437 GSNDLRQHSQIDAHVGAVNDLAFA----YPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG----------HEA-PVYSI 500 (1096)
Q Consensus 437 ~~~~~~~~~~l~~h~~~v~~l~~s----~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~----------~~~-~v~~~ 500 (1096)
+++.+. ++.. ......++|+ |||+. ++++...+++|.++| .+.+.+..+.. |.. .+..+
T Consensus 229 t~~~v~---~i~~-G~~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i 303 (567)
T 1qks_A 229 EPTTVA---EIKI-GSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI 303 (567)
T ss_dssp SCCEEE---EEEC-CSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred CCcEeE---EEec-CCCCceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEE
Confidence 665554 3332 2346899999 69995 455566679999999 88888877642 112 56777
Q ss_pred EeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE-eCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEE
Q 001343 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 579 (1096)
..++.. ..+++....+|.|.++|+......... .........+.|+|+|++++++.. ..+.|.++|..+++.+..
T Consensus 304 ~~s~~~-~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~---~sn~V~ViD~~t~kl~~~ 379 (567)
T 1qks_A 304 LASHYR-PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN---ARNKLVVIDTKEGKLVAI 379 (567)
T ss_dssp EECSSS-SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG---GGTEEEEEETTTTEEEEE
T ss_pred EEcCCC-CEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC---CCCeEEEEECCCCcEEEE
Confidence 776542 356666777899999998765543322 223345778899999999987764 277899999999998887
Q ss_pred EcC-cCcc-ceEEE-EEeCCCCEEEEEE--cCCeEEEEeCCC-------CeEEEEeecCCCCCCccEEEEeCCCCEEEEE
Q 001343 580 YAG-FRKK-SNGVV-QFDTTQNHFLAVG--EDSQIKFWDMDN-------VNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1096)
Q Consensus 580 ~~~-~~~~-~i~~~-~~~~~~~~l~~~~--~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 647 (1096)
+.. .... +-... .++|++..+++.+ .++.|.++|..+ .+.+..+...+. .-..+..+|+++++.+.
T Consensus 380 i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~--g~~~i~~~p~~~~l~v~ 457 (567)
T 1qks_A 380 EDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG--GSLFIKTHPNSQYLYVD 457 (567)
T ss_dssp EECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEECCTTCSEEEEE
T ss_pred EeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC--CCEEEEeCCCCCeEEEe
Confidence 764 2211 10112 2578765555444 468999999987 567788776542 33557889999998887
Q ss_pred EC-------CCcEEEEEcCCC
Q 001343 648 TA-------DNGFKILANAIG 661 (1096)
Q Consensus 648 ~~-------dg~i~iwd~~~~ 661 (1096)
.. ...|.++|+.+.
T Consensus 458 ~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 458 ATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp CTTCSSHHHHTCEEEEEGGGC
T ss_pred cCCCCCcccCceEEEEECCcc
Confidence 63 358899987653
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.64 E-value=5e-14 Score=154.62 Aligned_cols=245 Identities=10% Similarity=0.002 Sum_probs=181.0
Q ss_pred CCCEEEEEEcCCCCEEEEEECC------------------------CeEEEEEccCCCccccceeecccccCEEEEEEec
Q 001343 406 PISVSRVAWSPDGNYVGVAFTK------------------------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~d------------------------g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~ 461 (1096)
-+.|.+|+++|+|+++++...+ +.|.+||..+++..... -.++-.....+++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~--~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS--GKNLFYLPHGLSIDT 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE--CTTTCSSEEEEEECT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc--CCCccCCceEEEECC
Confidence 4579999999999999888777 47999999888765421 124556899999999
Q ss_pred CCCcEEEEEEeCCCcEEEEEcCCc--eEEEe---------eCCCCCeEEEEeeecCCCcEEEEEE-CCCeEEEEEcCCCC
Q 001343 462 PNKLLCVVTCGDDKLIKVWELSGR--KLFNF---------EGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDTMG 529 (1096)
Q Consensus 462 d~~~~~l~s~s~d~~i~iwd~~~~--~~~~~---------~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~ 529 (1096)
+|+ ++++...++.|++||.+++ .+..+ .++......+++.+. ++.++++.+ .++.|++|+. .+.
T Consensus 101 ~g~--l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~-~g~lyv~d~~~~~~I~~~~~-~g~ 176 (329)
T 3fvz_A 101 DGN--YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS-TGAVFVSDGYCNSRIVQFSP-SGK 176 (329)
T ss_dssp TSC--EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT-TCCEEEEECSSCCEEEEECT-TSC
T ss_pred CCC--EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC-CCeEEEEeCCCCCeEEEEcC-CCC
Confidence 999 8888888999999996665 55655 244456889999653 456777776 6999999994 445
Q ss_pred eeeEEeCCC----------CcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc-CccceEEEEEeCCCC
Q 001343 530 SRVDYDAPG----------HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF-RKKSNGVVQFDTTQN 598 (1096)
Q Consensus 530 ~~~~~~~~~----------~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~ 598 (1096)
....+.... .....++++|++..++++.. +++.|++|+..+++.+..+... ....+..++++| +.
T Consensus 177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~---~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~ 252 (329)
T 3fvz_A 177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR---ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GF 252 (329)
T ss_dssp EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET---TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TE
T ss_pred EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC---CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CE
Confidence 544443221 24889999999444444432 3889999999989998888532 122577888998 33
Q ss_pred EEEEE-------EcCCeEEEEeCCCCeEEEEeec-CCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 599 HFLAV-------GEDSQIKFWDMDNVNILTSTDA-EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 599 ~l~~~-------~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
.+.+. ..+..|++|+..+++.+..+.. ..+...+..++++|+|.++++...++.|++|++..
T Consensus 253 ~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 253 LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 33332 2445899999999999888742 22334688999999998888888899999999854
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.63 E-value=7.2e-15 Score=166.75 Aligned_cols=242 Identities=10% Similarity=-0.006 Sum_probs=161.5
Q ss_pred CEEEEEEcCCCCEEEEEECC---CeEEEEEccCCCccccceeecccccC-EEEEEEecCCCcEEEEEEeCCCcEEEEE-c
Q 001343 408 SVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGA-VNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~l~~h~~~-v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~ 482 (1096)
.+.+++|||||++|+.+... ..|.+||+.+++... +..+... ...+.|+|||+ .|+.++.++.|++|| .
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~ 110 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLE 110 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETT
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECC
Confidence 36778999999999877553 478888998876433 3333333 33478999999 888888899999999 6
Q ss_pred CCceEEEeeCCCCCeEE---EEe--------------eecCCCcEEEEE-----ECCCeEEEEEcCCCCeeeEEeCCCCc
Q 001343 483 SGRKLFNFEGHEAPVYS---ICP--------------HHKENIQFIFST-----AIDGKIKAWLYDTMGSRVDYDAPGHW 540 (1096)
Q Consensus 483 ~~~~~~~~~~~~~~v~~---~~~--------------~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~ 540 (1096)
.++.......+...... +++ ...++++.++.+ ..+..|.+||+.+++..... .+...
T Consensus 111 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~ 189 (396)
T 3c5m_A 111 TLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAW 189 (396)
T ss_dssp TCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSC
T ss_pred CCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcc
Confidence 66655555544442222 111 112233444332 35678999999887655444 34557
Q ss_pred EEEEEEcC-CCCEEEEEeeccCC--CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC-----CeEEEE
Q 001343 541 CTTMLYSA-DGSRLFSCGTSKDG--DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFW 612 (1096)
Q Consensus 541 i~~l~~s~-~~~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iw 612 (1096)
+..+.|+| +++.++.++..... ...|++||+.+++............+..+.|+|+|+.|+.++.+ +.|++|
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 269 (396)
T 3c5m_A 190 LGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKA 269 (396)
T ss_dssp EEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEE
T ss_pred cccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEE
Confidence 89999999 88877776531110 15799999876654333232112357778999999988776543 459999
Q ss_pred eCCCCeEEEEeecCCCCCCccEEEEeC-CCCEEEEEE----------------CCCcEEEEEcCCC
Q 001343 613 DMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTT----------------ADNGFKILANAIG 661 (1096)
Q Consensus 613 d~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----------------~dg~i~iwd~~~~ 661 (1096)
|+.+++......... .. +.|+| +|+++++++ .++.|.+||+.++
T Consensus 270 d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 270 NPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp CTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred ECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 999887655443322 23 89999 999888765 2467999998776
No 180
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.60 E-value=2.2e-09 Score=133.00 Aligned_cols=585 Identities=9% Similarity=0.050 Sum_probs=331.4
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
...|+++.-.++|. +=.|+.+| +..||-.+ ++.+...... . -.-....|.+|...++|...+
T Consensus 42 ~n~v~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~~~----~--~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN--MWFATYDG-VNKYDGYA--------FTVYQHNEDD----P--NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSC--EEEEETTE-EEEECSSC--------EEEECCCTTC----T--TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCC--EEEeecCc-CcccCCCc--------eEEEeCCCCC----C--CcccccceeEEEECCCCCEEE-
Confidence 35799999999996 33455665 56666432 1112110000 0 001246799999999987665
Q ss_pred EECCCeEEEEEccCCCccccceeecccc----cCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeC-C-CCC
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHV----GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG-H-EAP 496 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~l~~h~----~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~-~-~~~ 496 (1096)
|+.+| +..||..+++... +.... ..|.++...++|. +.+ ++. +.+..|| .+++. ..+.. + ...
T Consensus 104 gT~~G-l~~yd~~~~~f~~----~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~-~~~~~~~~~~~ 173 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIFQN----FFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKF-IDDSFSTAMHK 173 (795)
T ss_dssp EESSC-EEEEETTTTEEEE----ECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEE-ECSSSCHHHHT
T ss_pred EeCCc-hheeCCCCCeEEe----ccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEE-EeccCCCCCCc
Confidence 55554 7889987654221 21111 1288898888886 444 444 5688999 54433 22211 1 112
Q ss_pred -eEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE-eCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 497 -VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 497 -v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
|.++.... ++ .+..++.++.|..|+..+.+..... ......|.++...+++...+.. . .+.+..||..++
T Consensus 174 ~i~~i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt-~----~~Gl~~~~~~~~ 245 (795)
T 4a2l_A 174 TIASTLYRQ--GD-QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVAT-E----GAGLFLINPKTK 245 (795)
T ss_dssp CCEEEEEEE--TT-EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEE-B----SSCEEEEETTTT
T ss_pred ceEEEEECC--CC-CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEE-C----CCCeEEEeCCCC
Confidence 77777644 44 4555776656888887665443221 1234568888888887755543 2 445889998877
Q ss_pred eeeEEEcCc------CccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC-----CCCCCccEEEEeCCCCE
Q 001343 575 TIKRTYAGF------RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-----GGLPNLPRLRFSKEGNL 643 (1096)
Q Consensus 575 ~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~ 643 (1096)
+........ ....|.++...++|. +..|+.+ .|.+|+..++......... -....|.++...++|.+
T Consensus 246 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l 323 (795)
T 4a2l_A 246 EIKNYLHSPSNPKSISSNYIRSLAMDSQNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM 323 (795)
T ss_dssp EEEEECCCTTCTTSCSCSBEEEEEECTTSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE
T ss_pred eEEEeecCCCCccccCCCeEEEEEEcCCCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE
Confidence 654432211 123688888888776 4455555 6899998877655433211 11236889999888875
Q ss_pred EEEEECCCcEEEEEcCCCccccccccCC--CcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCc
Q 001343 644 LAVTTADNGFKILANAIGLRSLRAVENP--PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPT 721 (1096)
Q Consensus 644 l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1096)
. .|+.++-|..|+..++. ...+... ........|.++...++|..-+.+.
T Consensus 324 W-igt~~~Gl~~~~~~~~~--~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~------------------------- 375 (795)
T 4a2l_A 324 W-LGTYFGGLNYYHPIRNR--FKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTN------------------------- 375 (795)
T ss_dssp E-EEESSSCEEEECGGGGS--SEEECCCTTSSSCSCSSEEEEEECTTSCEEEEES-------------------------
T ss_pred E-EEECCCCeEEeCCCccc--ceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEEC-------------------------
Confidence 5 56677778888875541 1111111 1112233466677666666553333
Q ss_pred cCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCC--C--CCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCc
Q 001343 722 SRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPE--S--TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNE 797 (1096)
Q Consensus 722 ~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~--~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~ 797 (1096)
++.+..|+.. .+.+..+.... . ......|.++...+++..|..++.++-+..|+.....
T Consensus 376 -------------~~Gl~~~~~~----~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~ 438 (795)
T 4a2l_A 376 -------------DGGLNLYNPI----TQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ 438 (795)
T ss_dssp -------------SSCEEEECTT----TCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred -------------CCCeEEEcCC----CCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence 2344555543 22333322110 0 0124679999998888735556665667777753211
Q ss_pred cCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeec------CC
Q 001343 798 QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM------SP 871 (1096)
Q Consensus 798 ~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~------~h 871 (1096)
. ..+..... .+ ....|.++...++|++.+... +.+.+||..+++...... .+
T Consensus 439 ~------------~~~~~~~~-----~l----~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~ 496 (795)
T 4a2l_A 439 V------------ENFNQRNS-----QL----VNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVV 496 (795)
T ss_dssp E------------EEECTTTS-----CC----SCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCC
T ss_pred E------------EEeecCCC-----Cc----CCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccC
Confidence 1 11110000 01 345789999999998766555 568899987765543221 12
Q ss_pred CCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEec
Q 001343 872 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHE 951 (1096)
Q Consensus 872 ~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d 951 (1096)
...|.++...+ ++++.+.. . +-|..|+..++.. . .... ....+-....|.++...++|...+.+..
T Consensus 497 ~~~i~~i~~d~-~g~lWigt-~-~Gl~~~~~~~~~~-~--~~~~--------~~~~~l~~~~i~~i~~d~~g~lWigT~~ 562 (795)
T 4a2l_A 497 SKQITTLFRDS-HKRLWIGG-E-EGLSVFKQEGLDI-Q--KASI--------LPVSNVTKLFTNCIYEASNGIIWVGTRE 562 (795)
T ss_dssp CCCEEEEEECT-TCCEEEEE-S-SCEEEEEEETTEE-E--ECCC--------SCSCGGGGSCEEEEEECTTSCEEEEESS
T ss_pred CceEEEEEECC-CCCEEEEe-C-CceEEEeCCCCeE-E--EecC--------CCCCCCCCCeeEEEEECCCCCEEEEeCC
Confidence 35788999988 77655544 4 4588888877651 1 0000 0000001126788888899987666544
Q ss_pred ceEEEEEcccceeccccccCCCC-CCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccc
Q 001343 952 TQLAIYDASKMERIRQWTPQDAL-SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTV 1030 (1096)
Q Consensus 952 ~~i~iwd~~~~~~~~~~~~~~~~-~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v 1030 (1096)
.|..||..+++... +...+++ ...|.++...++|.+.+++ . +-|..|+..++++... ....-++.. .+
T Consensus 563 -Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~~~~-~~~dGl~~~------~f 631 (795)
T 4a2l_A 563 -GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKFRNF-TESDGLQSN------QF 631 (795)
T ss_dssp -CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEEEEE-CGGGTCSCS------CE
T ss_pred -CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcEEEc-CCcCCCccc------cC
Confidence 78889987765432 2111111 4568888888889877644 3 4578899888765432 222212211 22
Q ss_pred cceEEEecCCCCceEEEEeeCCcEEEEccCC
Q 001343 1031 YPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1061 (1096)
Q Consensus 1031 ~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~ 1061 (1096)
..-++...+ +|.+++ |+.+| +..++...
T Consensus 632 ~~~~~~~~~-~G~l~~-g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 632 NTASYCRTS-VGQMYF-GGING-ITTFRPEL 659 (795)
T ss_dssp EEEEEEECT-TSCEEE-EETTE-EEEECGGG
T ss_pred ccCceeECC-CCeEEE-ecCCc-eEEEcHHH
Confidence 111356666 676555 55666 55566543
No 181
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.59 E-value=6.5e-10 Score=137.77 Aligned_cols=536 Identities=8% Similarity=0.006 Sum_probs=308.2
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
...|.++...++|. +.+ |+. +.+..||..+++...- ... ... ....|.++...++|.+.+
T Consensus 87 ~n~I~~i~~d~~g~-lWi-gT~-~Gl~~yd~~~~~f~~~------~~~---------~~~-~~~~i~~i~~d~~g~lwi- 146 (795)
T 4a2l_A 87 NDISRIVKTDSQGR-VWI-GTR-DGLSRYDEEKDIFQNF------FYE---------KNG-KHLQVNGIEEISPEQLLI- 146 (795)
T ss_dssp CSCEEEEEECTTSC-EEE-EES-SCEEEEETTTTEEEEE------CCE---------ETT-EECCCCEEEEEETTEEEE-
T ss_pred ccceeEEEECCCCC-EEE-EeC-CchheeCCCCCeEEec------ccc---------ccC-CCceEEEEEECCCCCEEE-
Confidence 35799999999998 443 445 4589999877654321 000 000 001188888888887665
Q ss_pred EECCCeEEEEEccCCCccccceeeccc-ccC-EEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe-eCCCCCeEE
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQIDAH-VGA-VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EGHEAPVYS 499 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~l~~h-~~~-v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-~~~~~~v~~ 499 (1096)
++. +-|..||..+++.... ..++ ... |.++...+++. |..++.++-+..|| .+++..... ......|.+
T Consensus 147 ~t~-~gl~~~~~~~~~~~~~---~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~ 219 (795)
T 4a2l_A 147 STP-EGLIMFDIKESKFIDD---SFSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQA 219 (795)
T ss_dssp EET-TEEEEEETTTTEEECS---SSCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred EEC-CceEEEECCCCEEEec---cCCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence 444 4588899876542211 0011 123 88898888886 44466665688999 555443221 123456888
Q ss_pred EEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC-------CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC
Q 001343 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-------PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1096)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~ 572 (1096)
+.... ++ .|..|+.++-+..||..+.+....... ....|.++...++|...+.. .+-|.+||..
T Consensus 220 i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt------~~Gl~~~~~~ 290 (795)
T 4a2l_A 220 ILQQS--PT-RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT------FNDLNIYHEG 290 (795)
T ss_dssp EEEEE--TT-EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE------SSCEEEEETT
T ss_pred EEEcC--CC-CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe------CChhheEcCC
Confidence 77644 44 455666554588888766543322111 13479999999888766544 2368899988
Q ss_pred CCeeeEEEcC------cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC----CCCCCccEEEEeCCCC
Q 001343 573 EGTIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE----GGLPNLPRLRFSKEGN 642 (1096)
Q Consensus 573 ~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~ 642 (1096)
++........ .....|.++...++|. +..|+.++.|..|+..++......... -....|.++...++|.
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 7765443221 1223688888888775 667777788999987665433222111 0123688888888887
Q ss_pred EEEEEECCCcEEEEEcCCCccccccccCCC---c-ccccCcceeEEeecCCC-eEEecCCCCceeEeccCCCcCCCcccC
Q 001343 643 LLAVTTADNGFKILANAIGLRSLRAVENPP---F-EALRTPIESVALKVSAS-SAVSSGTPANCKVERSSPVRPSPIING 717 (1096)
Q Consensus 643 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~-~~~~~~v~~~~~s~~g~-~lv~~~s~~~~~~~~~~~~~~~~~~~~ 717 (1096)
+. .|+.++-|..|+..++. . ..+.... . ......|.++...++|+ ..+++..
T Consensus 370 lW-iGt~~~Gl~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~-------------------- 426 (795)
T 4a2l_A 370 LW-IGTNDGGLNLYNPITQR-F-TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHA-------------------- 426 (795)
T ss_dssp EE-EEESSSCEEEECTTTCC-E-EEECCC------CCSCSCEEEEEEETTTTEEEEEETT--------------------
T ss_pred EE-EEECCCCeEEEcCCCCc-E-EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCc--------------------
Confidence 55 57777779999887652 1 1111110 0 11223466677776666 4433322
Q ss_pred CCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCc
Q 001343 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNE 797 (1096)
Q Consensus 718 ~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~ 797 (1096)
+.+..++.. ++.+..+...........|.++...++|...+ ++.+ .+.+|+.....
T Consensus 427 ------------------~Gl~~~d~~----~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~~~~ 482 (795)
T 4a2l_A 427 ------------------GGLSILHRN----SGQVENFNQRNSQLVNENVYAILPDGEGNLWL-GTLS-ALVRFNPEQRS 482 (795)
T ss_dssp ------------------TEEEEEETT----TCCEEEECTTTSCCSCSCEEEEEECSSSCEEE-EESS-CEEEEETTTTE
T ss_pred ------------------CceeEEeCC----CCcEEEeecCCCCcCCCeeEEEEECCCCCEEE-EecC-ceeEEeCCCCe
Confidence 334445443 23333332111112456789999888888444 4444 46667643211
Q ss_pred cCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccceEEEeec-------C
Q 001343 798 QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM-------S 870 (1096)
Q Consensus 798 ~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~-------~ 870 (1096)
. ..+... . ...+ -....|.++...++|++.+... +.|..||..+++. .+. .
T Consensus 483 ~------------~~~~~~-~-----~~~~-~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l 540 (795)
T 4a2l_A 483 F------------TTIEKE-K-----DGTP-VVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNV 540 (795)
T ss_dssp E------------EECCBC-T-----TCCB-CCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGG
T ss_pred E------------EEcccc-c-----cccc-cCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCC
Confidence 1 000000 0 0000 0246789999999998776655 6688999877665 222 1
Q ss_pred CCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEe
Q 001343 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH 950 (1096)
Q Consensus 871 h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~ 950 (1096)
+...|.++...+ ++++.+. +.. -+..||..+++.. ......+-....|.++...++|.+.+++
T Consensus 541 ~~~~i~~i~~d~-~g~lWig-T~~-Gl~~~d~~~~~~~-------------~~~~~~gl~~~~i~~i~~d~~g~lWi~t- 603 (795)
T 4a2l_A 541 TKLFTNCIYEAS-NGIIWVG-TRE-GFYCFNEKDKQIK-------------RYNTTNGLPNNVVYGILEDSFGRLWLST- 603 (795)
T ss_dssp GGSCEEEEEECT-TSCEEEE-ESS-CEEEEETTTTEEE-------------EECGGGTCSCSCEEEEEECTTSCEEEEE-
T ss_pred CCCeeEEEEECC-CCCEEEE-eCC-CceeECCCCCcEE-------------EeCCCCCCchhheEEEEECCCCCEEEEc-
Confidence 235688999888 7775554 444 4788887766511 1111112111267888888889876665
Q ss_pred cceEEEEEcccceeccccccCCCCC-CCc--eEEEEeeCCcEEEEEecCCcEEEEecC
Q 001343 951 ETQLAIYDASKMERIRQWTPQDALS-API--SCAVYSCNSQLVFATFCDGNIGVFDAD 1005 (1096)
Q Consensus 951 d~~i~iwd~~~~~~~~~~~~~~~~~-~~i--~~l~~s~dg~~la~~~~dg~i~vwd~~ 1005 (1096)
++.|..|+..+++.. .+...+++. ..+ .++...++|++++ |+.+|- ..++.+
T Consensus 604 ~~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~Gl-~~~~p~ 658 (795)
T 4a2l_A 604 NRGISCFNPETEKFR-NFTESDGLQSNQFNTASYCRTSVGQMYF-GGINGI-TTFRPE 658 (795)
T ss_dssp TTEEEEEETTTTEEE-EECGGGTCSCSCEEEEEEEECTTSCEEE-EETTEE-EEECGG
T ss_pred CCceEEEcCCCCcEE-EcCCcCCCccccCccCceeECCCCeEEE-ecCCce-EEEcHH
Confidence 567888898876643 222211112 222 4666678887766 677774 445543
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.58 E-value=6.7e-13 Score=146.28 Aligned_cols=272 Identities=10% Similarity=0.018 Sum_probs=185.1
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 424 (1096)
..|.+++|+|++.. ++..+.++.++.|. ++.... +.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS-AVPIISESELQTIT---AEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGGC-SSCCCCGGGSCEEE---CEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCccc-eeEEeecccCcccc---cceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 35788899999874 66667788899992 333221 44566678999999999988888
Q ss_pred ECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC----CcEEEEE-cCCceEEEee--CCCCCe
Q 001343 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWE-LSGRKLFNFE--GHEAPV 497 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d----~~i~iwd-~~~~~~~~~~--~~~~~v 497 (1096)
..++.|.+||.++++... ....+...+.+++|+++|+ ++++...+ +.|.+|| ..+.....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 889999999998876433 1224667899999999998 67776666 6899999 5554432332 244568
Q ss_pred EEEEeeecCCCcEEEEEEC------CCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC
Q 001343 498 YSICPHHKENIQFIFSTAI------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~ 571 (1096)
.++++.+ +|.++++... .+.|..+|..+.+... +......+..++|+|+|+.++.+.. .++.|++||.
T Consensus 138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 8898866 5666665543 2455555544433322 2222335789999999997765542 2678999998
Q ss_pred CC-CeeeEEE------cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCC----CCCccEEEEeCC
Q 001343 572 SE-GTIKRTY------AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG----LPNLPRLRFSKE 640 (1096)
Q Consensus 572 ~~-~~~~~~~------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~~ 640 (1096)
.+ +.....+ .......+..++++++|+.+++...++.|.+||. .++.+..+..... ...+.+++|+|+
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence 63 3322211 1111125677999999998887778899999998 5666666654321 114789999999
Q ss_pred CCEEEEEECCC
Q 001343 641 GNLLAVTTADN 651 (1096)
Q Consensus 641 ~~~l~~~~~dg 651 (1096)
+..|++++.++
T Consensus 291 g~~L~v~~~~g 301 (333)
T 2dg1_A 291 TNQLIICSNDI 301 (333)
T ss_dssp SCEEEEEEECG
T ss_pred CCEEEEEeCcc
Confidence 87777666553
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.58 E-value=7.1e-13 Score=162.25 Aligned_cols=249 Identities=9% Similarity=-0.006 Sum_probs=175.3
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEECCC-----eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCc-
Q 001343 403 KDVPISVSRVAWSPDGNYVGVAFTKH-----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL- 476 (1096)
Q Consensus 403 ~~h~~~V~~l~~spd~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~- 476 (1096)
.+|...+..++|||||++||.+..++ .|++||+.+++.... .+ ....+..++|+|||+ .|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~--~~~~~~~~~wspDg~--~l~~~~~~~~~ 194 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VL--ERVKFSCMAWTHDGK--GMFYNAYPQQD 194 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EE--EEECSCCEEECTTSS--EEEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cc--cCcccceEEEEeCCC--EEEEEEECCcc
Confidence 34556799999999999999876543 899999999876542 12 222367899999999 7777777765
Q ss_pred ---------------EEEEE-cCCce--EEEee--CCCCCeEEEEeeecCCCcEEEEEEC-----CCeEEEEEcCC----
Q 001343 477 ---------------IKVWE-LSGRK--LFNFE--GHEAPVYSICPHHKENIQFIFSTAI-----DGKIKAWLYDT---- 527 (1096)
Q Consensus 477 ---------------i~iwd-~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~---- 527 (1096)
|++|+ .++.. ...+. .|...+..+.|+| ||++|+.++. +..|.+||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD--DGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC--CCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999 55542 22223 3455677888866 6788887765 56899999986
Q ss_pred --CC-eeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee--eEEEcCcCc-cceEEEEEeCCCCEEE
Q 001343 528 --MG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--KRTYAGFRK-KSNGVVQFDTTQNHFL 601 (1096)
Q Consensus 528 --~~-~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~-~~i~~~~~~~~~~~l~ 601 (1096)
+. ....+..+...+.. .|+++|+.++..+........|.+||+.++.. .+.+..+.. ..+..+.|++++..++
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 43 34455555554444 48899998887765333356899999988742 344444433 3677788887777778
Q ss_pred EEEcCCe--EEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEE----CCCcEEEEEcCCCc
Q 001343 602 AVGEDSQ--IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT----ADNGFKILANAIGL 662 (1096)
Q Consensus 602 ~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~ 662 (1096)
+...++. |++|++.+++.+..+..+. ..+..++++|++..++... ..+.|..||+.++.
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~~--~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLEV--GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCCS--SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCCC--ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8888874 6677876787777776653 3678889999987666443 24789999998763
No 184
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=1.7e-08 Score=124.68 Aligned_cols=591 Identities=11% Similarity=0.069 Sum_probs=327.6
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
...|+|+.-.++|. +=.|+.+| +..||-.+ ++.+..... . ... ..-....|.+|.-.++|..|-+
T Consensus 18 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~~-~-~~~--~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGF--LWFATEEG-LNKFDGTR--------FITYYKEEQ-S-SSV--QSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSC--EEEEESSC-EEEECSSS--------EEEECCCSS-C-SSS--CCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCC--EEEccCCc-CccccCCc--------eEEEEcCCC-C-Ccc--ccccccccceEEEcCCCCEEEE
Confidence 45799999999996 33455665 66677432 111111000 0 000 0012356999999998884556
Q ss_pred EECCCeEEEEEccCCCcccccee-ec---ccccCEEEEEEec--CCCcEEEEEEeCCCcEEEEEcCCceEEEeeC-----
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQ-ID---AHVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWELSGRKLFNFEG----- 492 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~-l~---~h~~~v~~l~~s~--d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~----- 492 (1096)
|+.++-+..||..+++....... .. -....|.++.... ++. |..++.++.+..+|........+..
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~ 159 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPA 159 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccC
Confidence 77775689999887543211000 00 0123688888877 664 4556655668889943333334321
Q ss_pred -CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEE-------eCCCCcEEEEEEcCCCCEEEEEeeccCCCC
Q 001343 493 -HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1096)
Q Consensus 493 -~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~ 564 (1096)
....|.++.... ++ .|..++.++-|..||..+.+..... ......|.++...++|...+.. .+
T Consensus 160 l~~~~i~~i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt------~~ 230 (781)
T 3v9f_A 160 LPSEQTWTATEAE--DG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGT------SK 230 (781)
T ss_dssp CSCCCEEEEEEEE--TT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEE------TT
T ss_pred CCccceEEEEECC--CC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEe------CC
Confidence 134577776643 43 4666777756888887665432211 1123468999998888766653 33
Q ss_pred eEEEEeCCCCeeeEEEcC------cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEee-------cC-----
Q 001343 565 FLVEWNESEGTIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD-------AE----- 626 (1096)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~----- 626 (1096)
-+.+||..+++....... .....|.++...++| .+..|+..+.|.+++..++....... ..
T Consensus 231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 309 (781)
T 3v9f_A 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDN-KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYS 309 (781)
T ss_dssp EEEEEETTTTEEEC-----------CCCCEEEEEECTTS-EEEEEESSSCEEEEETTCC---------CEEECBCSSTTS
T ss_pred cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCC-CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCC
Confidence 789999887765432211 122367778877765 46667775678899987765432221 10
Q ss_pred CCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccC-----CCcccccCcceeEEeecCCCeEEecCCCCce
Q 001343 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVEN-----PPFEALRTPIESVALKVSASSAVSSGTPANC 701 (1096)
Q Consensus 627 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~ 701 (1096)
-....|.++...++|.+. .|+.++-|..++..+.. ...+.. .........|.++...++|...+++..
T Consensus 310 l~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~---- 382 (781)
T 3v9f_A 310 LSNASARYIFQDSFNNIW-IGTWGGGINFISNAPPT--FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDG---- 382 (781)
T ss_dssp BSSSCEEEEEECSSCCEE-EEEBSSCEEEECSSCCS--CEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBS----
T ss_pred CCCCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCCc--ceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCC----
Confidence 112368888888888654 56666778888876542 111110 011112334666666666655433322
Q ss_pred eEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEE
Q 001343 702 KVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLA 781 (1096)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 781 (1096)
+.+..|+... +....+..+. ......|.++...+++. |..
T Consensus 383 ----------------------------------~Gl~~~~~~~----~~~~~~~~~~-~~~~~~v~~i~~d~~g~-lWi 422 (781)
T 3v9f_A 383 ----------------------------------GGINVFENGK----RVAIYNKENR-ELLSNSVLCSLKDSEGN-LWF 422 (781)
T ss_dssp ----------------------------------SCEEEEETTE----EEEECC------CCCSBEEEEEECTTSC-EEE
T ss_pred ----------------------------------CcEEEEECCC----CeEEEccCCC-CCCCcceEEEEECCCCC-EEE
Confidence 3344444321 1111100000 11446789998888887 555
Q ss_pred eecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEccc
Q 001343 782 LGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMT 861 (1096)
Q Consensus 782 ~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~ 861 (1096)
++.++.+..++... ++.......+ .....|.++...++|++.+... +.|.+||..+
T Consensus 423 gt~~~Gl~~~~~~~----------------------~~~~~~~~~~-~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~ 478 (781)
T 3v9f_A 423 GTYLGNISYYNTRL----------------------KKFQIIELEK-NELLDVRVFYEDKNKKIWIGTH-AGVFVIDLAS 478 (781)
T ss_dssp EETTEEEEEECSSS----------------------CEEEECCSTT-TCCCCEEEEEECTTSEEEEEET-TEEEEEESSS
T ss_pred EeccCCEEEEcCCC----------------------CcEEEeccCC-CCCCeEEEEEECCCCCEEEEEC-CceEEEeCCC
Confidence 66555666665422 1111100000 0346788999998888666554 6799999877
Q ss_pred ceEEEeecCC-----CCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCce
Q 001343 862 FKVMTTFMSP-----PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTR 936 (1096)
Q Consensus 862 ~~~~~~~~~h-----~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~ 936 (1096)
++........ ...|.++...+ ++++.+ |+.++-+..|+..+++.. ......+-....|.+
T Consensus 479 ~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~-------------~~~~~~~l~~~~i~~ 543 (781)
T 3v9f_A 479 KKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQLVR-------------KFNQYEGFCSNTINQ 543 (781)
T ss_dssp SSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCEEE-------------EECTTTTCSCSCEEE
T ss_pred CeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCeEE-------------EccCCCCCCCCeeEE
Confidence 6543322212 35788999888 776554 555334777887665410 111111111136888
Q ss_pred EEEecCCcEEEEEecceEEEEEcccceeccccccCCCC-CCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEcc
Q 001343 937 VQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDAL-SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1015 (1096)
Q Consensus 937 v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~ 1015 (1096)
+...++|...+.+..|.+..||..+++.. .+...+++ ...|.++...++|.+.++ +.+| |..|+..++++... ..
T Consensus 544 i~~d~~g~lWi~T~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~~~~~~~-~~ 619 (781)
T 3v9f_A 544 IYRSSKGQMWLATGEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSKKCFYTY-DH 619 (781)
T ss_dssp EEECTTSCEEEEETTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTTTEEEEE-CG
T ss_pred EEECCCCCEEEEECCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCCCceEEe-cc
Confidence 99889998777755555488998776532 22111111 456888988888987664 4555 77789887765433 21
Q ss_pred ccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCC
Q 001343 1016 STYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1061 (1096)
Q Consensus 1016 ~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~ 1061 (1096)
..-++.. .-... ++...+ +|.+++ |+.+| +..++...
T Consensus 620 ~dGl~~~----~f~~~--~~~~~~-~G~l~~-g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 620 SNNIPQG----SFISG--CVTKDH-NGLIYF-GSING-LCFFNPDI 656 (781)
T ss_dssp GGTCCSS----CEEEE--EEEECT-TSCEEE-EETTE-EEEECSCC
T ss_pred cCCcccc----ccccC--ceEECC-CCEEEE-ECCCc-eEEEChhh
Confidence 2211111 11112 355566 666554 66676 55667554
No 185
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.56 E-value=1.1e-12 Score=138.71 Aligned_cols=243 Identities=11% Similarity=0.069 Sum_probs=182.0
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC-CCEEEEEEcCCCCEEEEEECCCeEEEEEccC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~ 437 (1096)
+|++++.++.|.+||.++|+.+.+ +..+. ..+.++.++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 799999999999999999998754 23333 4688999999999998 45778999999 7
Q ss_pred CCccccceeeccc-ccCEEEEEEecCCCcEEEEEEeC-CCcEEEEEcCCceEEEeeC------CCCCeEEEEeeecCCCc
Q 001343 438 SNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWELSGRKLFNFEG------HEAPVYSICPHHKENIQ 509 (1096)
Q Consensus 438 ~~~~~~~~~l~~h-~~~v~~l~~s~d~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~ 509 (1096)
|+.+.. +..+ ...+.++.+.++|+ ++++.+. ++.|..+|.+|+.+..+.. +......+++ ..+|+
T Consensus 65 G~~~W~---~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G~ 137 (276)
T 3no2_A 65 GRELWN---IAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINK--NKKGN 137 (276)
T ss_dssp SCEEEE---EECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEE--CTTSC
T ss_pred CCEEEE---EcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceE--CCCCC
Confidence 776653 4333 35788999999999 7888776 7888888888988877652 1123334444 44788
Q ss_pred EEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc----
Q 001343 510 FIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---- 585 (1096)
Q Consensus 510 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---- 585 (1096)
++++...++.|..||.+ ++.+..+.... .+.++.+.++|+.++++.. ++.|..+|..+|+.+.++.....
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~~ 211 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGVQ 211 (276)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSCC
T ss_pred EEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCcc
Confidence 99999999999999988 88888877653 4556788899999988764 67899999999999999864321
Q ss_pred -cceEEEEEeCCCCEEEEEEcC--------CeEEEEeC-CCCeEEEEeecCCCCCCccEEE
Q 001343 586 -KSNGVVQFDTTQNHFLAVGED--------SQIKFWDM-DNVNILTSTDAEGGLPNLPRLR 636 (1096)
Q Consensus 586 -~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~ 636 (1096)
..+..+...++|+.+++.... +..+++.+ .+++.+..+........+..++
T Consensus 212 l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 212 LFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred ccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 136678888999888876421 23355555 4778888887766666666654
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.55 E-value=1.6e-12 Score=159.13 Aligned_cols=247 Identities=9% Similarity=-0.002 Sum_probs=171.1
Q ss_pred CCCceEEEEEcCCCCcEEEEEeC-CC----eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSS-NG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~-dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
|...+..++|||||++ ||.++. +| .|++||+.+++.+.. .+. ...+..++|+||
T Consensus 123 ~~~~~~~~~~SPDg~~-la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------~~~--~~~~~~~~wspD 181 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEY-FAYGLSASGSDWVTIKFMKVDGAKELPD------------------VLE--RVKFSCMAWTHD 181 (710)
T ss_dssp SCEEEEEEEECTTSSE-EEEEEEETTCSCEEEEEEETTTTEEEEE------------------EEE--EECSCCEEECTT
T ss_pred CCEEEEEEEECCCCCE-EEEEEcCCCCceEEEEEEECCCCCCCcc------------------ccc--CcccceEEEEeC
Confidence 4446899999999995 555444 33 899999999886531 011 112567999999
Q ss_pred CCEEEEEECCCe----------------EEEEEccCCCccc-cceeecccccCEEEEEEecCCCcEEEEEEeC-----CC
Q 001343 418 GNYVGVAFTKHL----------------IQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----DK 475 (1096)
Q Consensus 418 ~~~l~s~~~dg~----------------i~vwd~~~~~~~~-~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~-----d~ 475 (1096)
|+.|+.++.++. |++|++.+++... .......|...+..+.|+|||+ +|+.++. +.
T Consensus 182 g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~ 259 (710)
T 2xdw_A 182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR--YVLLSIREGCDPVN 259 (710)
T ss_dssp SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--EEEEEEECSSSSCC
T ss_pred CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC--EEEEEEEccCCCcc
Confidence 999999988765 9999998875321 1112233566788999999999 5555543 67
Q ss_pred cEEEEE-cC------Cc-eEEEeeCCCCCeEEEEeeecCCCcEEEEEECC----CeEEEEEcCCCCe--eeEEeCCCC--
Q 001343 476 LIKVWE-LS------GR-KLFNFEGHEAPVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGS--RVDYDAPGH-- 539 (1096)
Q Consensus 476 ~i~iwd-~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~--~~~~~~~~~-- 539 (1096)
.|++|| .+ +. ....+..+...+... |.+ +|..|+..+.. +.|.+||+.+... ...+..+..
T Consensus 260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 336 (710)
T 2xdw_A 260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD 336 (710)
T ss_dssp EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC
T ss_pred EEEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC
Confidence 899999 54 43 466677776666553 555 44555555443 3699999987642 234444433
Q ss_pred cEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE----cCCeEEEEeCC
Q 001343 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMD 615 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~ 615 (1096)
.+..++|++++.++++... ++...|++|++.+++.++.+..+.. .+..+.++|++..++... ..+.|+.||+.
T Consensus 337 ~~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~~-~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 337 VLEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEVG-SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413 (710)
T ss_dssp EEEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCSS-EEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred eEEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCCc-eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 6888999877666666654 2233678889878887788877744 677788999887766443 35789999998
Q ss_pred CCe
Q 001343 616 NVN 618 (1096)
Q Consensus 616 ~~~ 618 (1096)
+++
T Consensus 414 tg~ 416 (710)
T 2xdw_A 414 KEE 416 (710)
T ss_dssp SSS
T ss_pred CCc
Confidence 876
No 187
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.55 E-value=2.1e-11 Score=131.76 Aligned_cols=282 Identities=9% Similarity=-0.050 Sum_probs=193.8
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
+...+.+++++++|+ ++++...++.|.+||.. ++.... .+..+...+.+++++++|+.++
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY------------------PLPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe------------------cCCcccCceeeEEECCCCCEEE
Confidence 456899999999998 66665557899999987 553321 0122456799999999999888
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEE-eeCCCCCeEEEE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSIC 501 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~~~~v~~~~ 501 (1096)
+...++.|..||.+ ++ .... .+......+.++++.+++. ++++...++.|.+||.+++.... ...+...+..++
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~ 147 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IKEY-TLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFIT 147 (299)
T ss_dssp EETTTTEEEEECTT-SC-EEEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EEEE-eCCCcCCCceeeEECCCCC--EEEEecCCceEEEECCCCCEEEecCCCCCCCCceEE
Confidence 77778899999976 33 2211 2223456789999999998 77777778899999975544322 233445688888
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCCCeeeE-EeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEE
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1096)
+.+ ++.++++...++.|..||. +++.... .......+..++++++|+..++... .+.|..||. +++.....
T Consensus 148 ~~~--~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~ 219 (299)
T 2z2n_A 148 LGS--DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEITEFK 219 (299)
T ss_dssp ECT--TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEEE
T ss_pred EcC--CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcEEEEE
Confidence 855 5667766666789999998 4443322 2233456889999999986666543 678999999 66644321
Q ss_pred cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 581 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
.......+..++++++|+.+++...++.|..||. ++.. ..+........+.++++ +++.++++.. .+.+..++..+
T Consensus 220 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 220 IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred CCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 2212236778999999886666557789999998 4543 33433333347889999 8888776655 56677777654
Q ss_pred C
Q 001343 661 G 661 (1096)
Q Consensus 661 ~ 661 (1096)
+
T Consensus 296 ~ 296 (299)
T 2z2n_A 296 D 296 (299)
T ss_dssp -
T ss_pred c
Confidence 4
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.54 E-value=2.3e-12 Score=139.12 Aligned_cols=242 Identities=7% Similarity=0.001 Sum_probs=173.3
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.+.....+++|+|+|+.+++++..++.|..||..++ ... +..+...+.+++++|+|+++
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~~~dg~l~ 83 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCLNKQGHLI 83 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEECTTCCEE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeECCCCcEE
Confidence 356678999999999867888889999999999876 221 33466789999999999988
Q ss_pred EEEECCCeEEEEEccCCCccccceeecc-cccCEEEEEEecCCCcEEEEEE----e-------------CCCcEEEEEcC
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTC----G-------------DDKLIKVWELS 483 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~-h~~~v~~l~~s~d~~~~~l~s~----s-------------~d~~i~iwd~~ 483 (1096)
++...++.|.+||..+++.........+ ....+..++++|+|+ ++++. + ..+.|..++..
T Consensus 84 v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 84 ACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD 161 (296)
T ss_dssp EEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred EEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC
Confidence 8777778999999987764321111111 123567899999998 77763 2 13456666644
Q ss_pred CceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcC-CCCe---eeEEeCCCCcEEEEEEcCCCCEEEEEeec
Q 001343 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGS---RVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~---~~~~~~~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
++ +..+..+......++|++ +++.+++.+.++.|.+|++. .+.. ...+......+..++++++|+..++.
T Consensus 162 g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--- 235 (296)
T 3e5z_A 162 GT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--- 235 (296)
T ss_dssp SC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---
T ss_pred CC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---
Confidence 44 445555666788999966 66777777788999999987 3332 22333334456789999999866654
Q ss_pred cCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEE-eCCCCEEEEEEcCCeEEEEeCCCCeE
Q 001343 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF-DTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1096)
++.|.+||.. ++.+..+..+.. +..++| +|+++.|++++.+ .+.-++..+...
T Consensus 236 ---~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 236 ---GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp ---TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred ---CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 5689999986 777777776654 667888 5888889888875 566667666543
No 189
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.53 E-value=2.5e-12 Score=140.71 Aligned_cols=276 Identities=11% Similarity=-0.011 Sum_probs=187.9
Q ss_pred CCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccc
Q 001343 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH 444 (1096)
Q Consensus 365 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~ 444 (1096)
.+++|.+||..+++..... +... --.........+++. +++.+++...++.|.+||..+++.+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i----~~~~---------n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~- 79 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEV----FYRA---------NGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR- 79 (328)
T ss_dssp CCBEEEEEETTTTEEECSH----HHHH---------HSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE-
T ss_pred CCceEEEEECCCCEEhhhh----Hhhh---------cCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE-
Confidence 3789999999998865421 0000 001122456778774 344555555678999999999887664
Q ss_pred eeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCC-----CCeEEEEeeecCCCcEEEEEE-CC
Q 001343 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE-----APVYSICPHHKENIQFIFSTA-ID 517 (1096)
Q Consensus 445 ~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~s~~-~d 517 (1096)
+. .......++++++++ +.++...++.|.+|| .+++....+.... .....+++ . ++.++++.. .+
T Consensus 80 --i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~ 151 (328)
T 3dsm_A 80 --IT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ 151 (328)
T ss_dssp --EE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred --cC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence 32 346789999999985 666665899999999 7787776665433 14456666 2 334444433 48
Q ss_pred CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCC------CCeEEEEeCCCCeeeEEEcCcCccceEEE
Q 001343 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG------DSFLVEWNESEGTIKRTYAGFRKKSNGVV 591 (1096)
Q Consensus 518 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~i~~~ 591 (1096)
+.|.+||..+.+....+... .....++++++|++++++...... .+.|.++|..+++....+..........+
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 99999999988777666543 345688999999876665431000 26899999999998877764433357789
Q ss_pred EEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC-CCCEEEEE----ECCCcEEEEEcCCCccccc
Q 001343 592 QFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVT----TADNGFKILANAIGLRSLR 666 (1096)
Q Consensus 592 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~----~~dg~i~iwd~~~~~~~~~ 666 (1096)
+++|+++.++++.. .|++||..+++................++++| ++.++++. ..++.|.+||.. + +.+.
T Consensus 231 a~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g-~~~~ 306 (328)
T 3dsm_A 231 QLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G-KLID 306 (328)
T ss_dssp EECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C-CEEE
T ss_pred EEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C-CEEE
Confidence 99999999888755 89999998877532111111123678999999 56666665 568899999987 5 3443
Q ss_pred cc
Q 001343 667 AV 668 (1096)
Q Consensus 667 ~~ 668 (1096)
.+
T Consensus 307 ~i 308 (328)
T 3dsm_A 307 EF 308 (328)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=6.3e-13 Score=162.16 Aligned_cols=248 Identities=10% Similarity=-0.058 Sum_probs=166.4
Q ss_pred ccCCCCEEEEEEcCCCCEEEEE-----ECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCc-
Q 001343 403 KDVPISVSRVAWSPDGNYVGVA-----FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL- 476 (1096)
Q Consensus 403 ~~h~~~V~~l~~spd~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~- 476 (1096)
.+|...+..++|||||++||.+ +.+..|++||+.+++.+... .+... ....++|+|||+ .|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~--~~~~~~wspDg~--~l~~~~~d~~~ 191 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGG--KYATPKWTPDSK--GFYYEWLPTDP 191 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence 4567789999999999999943 34568999999998765110 12111 126899999999 7888888776
Q ss_pred ------------EEEEE-cCCc----eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCC----eEEEEEcCCCCeeeEEe
Q 001343 477 ------------IKVWE-LSGR----KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG----KIKAWLYDTMGSRVDYD 535 (1096)
Q Consensus 477 ------------i~iwd-~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~ 535 (1096)
|++|+ .++. .+.....|...+.++.|+| +|++|+.++.++ .|.+|+..++. ...+.
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~ 268 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR--DGKYLFVYILRGWSENDVYWKRPGEKD-FRLLV 268 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT--TSCCEEEEEEETTTEEEEEEECTTCSS-CEEEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC--CCCEEEEEEeCCCCceEEEEEcCCCCc-eEEee
Confidence 99999 5554 3334444556788888866 667887777665 56666544433 33444
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee---eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEE
Q 001343 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFW 612 (1096)
Q Consensus 536 ~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 612 (1096)
.+...+....+ ++|. ++..+.....++.|++||+.++.. ...+..+....+..++++ ++..+++...|+..++|
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 44445555556 6677 555543222468999999988753 333433324367778887 66777888889988888
Q ss_pred eCC-CCeEEEEeecCCCCCCccEEEEeCCCCEEEEEEC----CCcEEEEEcCCCc
Q 001343 613 DMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIGL 662 (1096)
Q Consensus 613 d~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~~ 662 (1096)
.+. .++....+..+. ...+..++++|++..++.... .++|++||+.++.
T Consensus 346 ~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 346 VATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 665 355555555432 235778889999877764433 4689999998773
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=5.2e-13 Score=162.86 Aligned_cols=248 Identities=6% Similarity=-0.072 Sum_probs=162.6
Q ss_pred CCCceEEEEEcCCCCcEEEEE----eCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCC
Q 001343 343 QGSTVISMDFHPSHQTLLLVG----SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg----~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~ 418 (1096)
|...+.+++|||||++++++. +.+..|++||+.+++.+... .+.+. ....++|+|||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-----------------~~~~~--~~~~~~wspDg 179 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-----------------VIEGG--KYATPKWTPDS 179 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-----------------CBSCC--TTCCCEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-----------------ccCcc--cccceEEecCC
Confidence 555799999999999533333 33468999999998764110 01111 12578999999
Q ss_pred CEEEEEECCCe-------------EEEEEccCCCcc-ccceeecccccCEEEEEEecCCCcEEEEEEeCCC----cEEEE
Q 001343 419 NYVGVAFTKHL-------------IQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK----LIKVW 480 (1096)
Q Consensus 419 ~~l~s~~~dg~-------------i~vwd~~~~~~~-~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~----~i~iw 480 (1096)
+.|+.++.|.. |++|++.++... ..+.....|...+..+.|+|||+ +|+.++.++ .|++|
T Consensus 180 ~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~l~~~ 257 (695)
T 2bkl_A 180 KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK--YLFVYILRGWSENDVYWK 257 (695)
T ss_dssp SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC--CEEEEEEETTTEEEEEEE
T ss_pred CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC--EEEEEEeCCCCceEEEEE
Confidence 99999988766 999999987632 12222345667899999999999 555555454 67777
Q ss_pred EcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEE---CCCeEEEEEcCCCCe--eeEEeCC--CCcEEEEEEcCCCCEE
Q 001343 481 ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS--RVDYDAP--GHWCTTMLYSADGSRL 553 (1096)
Q Consensus 481 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~--~~~~~~~--~~~i~~l~~s~~~~~l 553 (1096)
+..+.....+..+...+....+ + ++.+++... .++.|.+||+.++.. ...+..+ ...+..++++ ++..+
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv 333 (695)
T 2bkl_A 258 RPGEKDFRLLVKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLS 333 (695)
T ss_dssp CTTCSSCEEEEECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEE
T ss_pred cCCCCceEEeecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEE
Confidence 7333344555556656666555 3 344444443 258899999987653 2233332 4467888888 56666
Q ss_pred EEEeeccCCCCeEEEEeCC-CCeeeEEEcCcCccceEEEEEeCCCCEEEEEE----cCCeEEEEeCCCCeE
Q 001343 554 FSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNI 619 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 619 (1096)
++... ++..++|.+. +++..+.+..+....+..+.++|++..++... ..++|++||+.+++.
T Consensus 334 ~~~~~----dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 334 LEYLK----DATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEE----TTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEE----CCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66665 6655555443 35556666655333566678889887776443 347899999988774
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.52 E-value=2.4e-12 Score=139.06 Aligned_cols=237 Identities=11% Similarity=0.047 Sum_probs=168.0
Q ss_pred cccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 402 FKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
+..+.....+++|+|+|+ .++++..++.|..||..++ .. .+..+...+.+++|+++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 445667789999999998 7778888899999999886 33 3556778899999999998 77777777899999
Q ss_pred E-cCCceEEEeeCC----CCCeEEEEeeecCCCcEEEEEEC-----------------CCeEEEEEcCCCCeeeEEeCCC
Q 001343 481 E-LSGRKLFNFEGH----EAPVYSICPHHKENIQFIFSTAI-----------------DGKIKAWLYDTMGSRVDYDAPG 538 (1096)
Q Consensus 481 d-~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~ 538 (1096)
| .+++........ ...+..+++.+ +|.++++.+. .+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAP--DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECT--TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECC--CCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 9 577754433221 22456788865 6677776321 2344444433 4444445555
Q ss_pred CcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCC-CCee---eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 001343 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 539 ~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~-~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1096)
.....++|+|+++.+++... ++.|++|++. +++. ...+ ......+..++++++|+.+++. ++.|.+|+.
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~----~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTG----DNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp SSEEEEEECTTSCEEEEETT----TTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred CCCccEEECCCCCEEEEeCC----CCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 67889999999999854443 7899999986 5554 3444 2222245668999999866655 789999998
Q ss_pred CCCeEEEEeecCCCCCCccEEEE-eCCCCEEEEEECCCcEEEEEcCCC
Q 001343 615 DNVNILTSTDAEGGLPNLPRLRF-SKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
. ++.+..+..+.. +.+++| .|+++.|++++.++ +.-++..+.
T Consensus 245 ~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 245 D-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp T-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred C-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 6 777777765542 789999 58999999888764 444455443
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.51 E-value=2.3e-12 Score=137.18 Aligned_cols=239 Identities=7% Similarity=-0.059 Sum_probs=166.1
Q ss_pred ceEEEEEcCCCCcEEE-EEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001343 346 TVISMDFHPSHQTLLL-VGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 346 ~V~~v~fsp~g~~lla-sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 424 (1096)
...+++++|+|+ +++ +.+.++.|.+||..++..... ...+...+.+++++++|+.+++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 789999999998 677 546789999999765543210 11233467889999999966655
Q ss_pred ECCCeEEEEEccCCCccccceeec-ccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEe
Q 001343 425 FTKHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICP 502 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~l~-~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~ 502 (1096)
. ++.|.+||..++.... +. .....+.++++.++|+ ++++...++.|.+|+ .+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 8899999987654321 22 2335789999999998 777777789999998 444333222233345778888
Q ss_pred eecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcC
Q 001343 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (1096)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 582 (1096)
.+ ++.++++...++.|.+||................+..++++++|...++... ++.|.+|+..+..... ...
T Consensus 158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~-~~~ 230 (270)
T 1rwi_B 158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTV-LPF 230 (270)
T ss_dssp CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEE-CCC
T ss_pred eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCccee-ecc
Confidence 65 5667777677889999998765544332233357899999999966666543 7789999987654433 222
Q ss_pred cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe
Q 001343 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 583 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1096)
.....+..++++++|+.+++...++.|++++....+
T Consensus 231 ~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 231 TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 111257789999999988888889999999987644
No 194
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.50 E-value=1.8e-11 Score=134.79 Aligned_cols=236 Identities=11% Similarity=0.032 Sum_probs=163.3
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.+...+.+++|+|+|+ +++++..++.|.+||..+++.... ...+...+.+++|+|+|+++
T Consensus 42 ~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~i~~~~dg~l~ 101 (333)
T 2dg1_A 42 KKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRLF 101 (333)
T ss_dssp SSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCEE
T ss_pred ccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEE-------------------eeCCCCCcceEEECCCCcEE
Confidence 3667889999999998 788888899999999988765421 22355789999999999988
Q ss_pred EEEECC----CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC------CCcEEEEEcCCceEEEee
Q 001343 422 GVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD------DKLIKVWELSGRKLFNFE 491 (1096)
Q Consensus 422 ~s~~~d----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~ 491 (1096)
++...+ +.|.+||.+++...... .-..+...+.+++++|+|+ ++++... .+.|..+|..+..+..+.
T Consensus 102 v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 178 (333)
T 2dg1_A 102 VCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVTPII 178 (333)
T ss_dssp EEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEEEEE
T ss_pred EEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCCCCEEEEee
Confidence 877666 68999999886543211 1113456799999999998 6666553 355666664333333333
Q ss_pred CCCCCeEEEEeeecCCCcEE-EEEECCCeEEEEEcCCC-CeeeE------EeCC-CCcEEEEEEcCCCCEEEEEeeccCC
Q 001343 492 GHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTM-GSRVD------YDAP-GHWCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~-~~~~~------~~~~-~~~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
.+...+..++|++ ++..+ ++.+.++.|.+||+++. ..... .... ...+..++++++|+..++...
T Consensus 179 ~~~~~~~~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~---- 252 (333)
T 2dg1_A 179 QNISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG---- 252 (333)
T ss_dssp EEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET----
T ss_pred cCCCcccceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC----
Confidence 3344578888866 56655 45556889999999642 22211 1111 136788999999997776653
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCcc-----ceEEEEEeCCCCEEEEEEcCC
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRKK-----SNGVVQFDTTQNHFLAVGEDS 607 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg 607 (1096)
++.|.+||. +++.+..+..+... .+..++|+++++.|++++.++
T Consensus 253 ~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 253 QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 678999998 56666666544321 467789999987887766553
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.49 E-value=1.7e-10 Score=124.69 Aligned_cols=239 Identities=10% Similarity=0.016 Sum_probs=169.0
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcC
Q 001343 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS 483 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~ 483 (1096)
.+...+.+++++++|+.+++...++.|.+||.. ++... . .+..+...+.++++.++|. +.++...++.|..||..
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITE-Y-PLPTPDAKVMCLTISSDGE--VWFTENAANKIGRITKK 86 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-E-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTT
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-e-cCCcccCceeeEEECCCCC--EEEeCCCCCeEEEECCC
Confidence 355689999999999988776667899999988 44322 1 1233557899999999998 77777778899999954
Q ss_pred CceEEEee--CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEeCCCCcEEEEEEcCCCCEEEEEeecc
Q 001343 484 GRKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 484 ~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
++. ..+. .....+.++++.+ ++.++++...++.|..||. ++.... ........+..+++.++|+..++...
T Consensus 87 g~~-~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-- 160 (299)
T 2z2n_A 87 GII-KEYTLPNPDSAPYGITEGP--NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ-- 160 (299)
T ss_dssp SCE-EEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT--
T ss_pred CcE-EEEeCCCcCCCceeeEECC--CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC--
Confidence 543 2332 2455688888865 6677777777889999988 433332 22234457899999999987776543
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCC
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1096)
.+.|..||. +++............+..+++++++..+++...++.|.+|+. +++... +........+.+++++++
T Consensus 161 --~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~ 235 (299)
T 2z2n_A 161 --NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAG 235 (299)
T ss_dssp --TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECST
T ss_pred --CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCC
Confidence 678999998 666554322222235778999999887666666889999999 665443 333323346889999999
Q ss_pred CCEEEEEECCCcEEEEEc
Q 001343 641 GNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 641 ~~~l~~~~~dg~i~iwd~ 658 (1096)
|+++++...++.|..|+.
T Consensus 236 g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 236 IDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp TCEEEEETTTTEEEEEET
T ss_pred CCEEEeccCCceEEEECC
Confidence 987766656788888886
No 196
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.47 E-value=1.7e-10 Score=124.75 Aligned_cols=279 Identities=9% Similarity=-0.046 Sum_probs=191.2
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
....+.++++.++|+ ++++...++.|.+||.. ++.... . +..+...+.+++++++|++++
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~---~---------------~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF---E---------------VPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE---E---------------CSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE---E---------------CCCCCCcceeEEECCCCCEEE
Confidence 456889999999998 67766678999999987 554320 0 222346799999999999887
Q ss_pred EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEE-eeCCCCCeEEEE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSIC 501 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~~~~v~~~~ 501 (1096)
+...++.|..||.. ++... . .+......+.++++.+++. ++++...++.|..+|..++.... +......+.+++
T Consensus 78 ~~~~~~~v~~~d~~-g~~~~-~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~ 152 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFTE-Y-PLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFIT 152 (300)
T ss_dssp EETTTTEEEEECTT-SCEEE-E-ECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEE
T ss_pred EecCCCeEEEECCC-CCeEE-e-cCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEE
Confidence 77667899999987 54321 1 2333446789999999998 77777768899999944665422 233445678888
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEE
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1096)
+.+ ++.+.++...++.|..||. ++.... ........+..+++.++|+..++... .+.|..|+. +++.....
T Consensus 153 ~d~--~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 153 LGS--DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISEYD 224 (300)
T ss_dssp ECT--TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEEE
T ss_pred ECC--CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEEEE
Confidence 855 5666666666789999987 333332 22233447899999999976666543 668999998 55544332
Q ss_pred cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 581 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
.......+..++++++|+..++...++.|..|+. ++... .+........+.++++.++|+++++.. . .|..++.
T Consensus 225 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 225 IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 2212235778999999886666656789999998 44433 333332234689999999998666554 4 6666664
No 197
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.47 E-value=9.3e-12 Score=138.04 Aligned_cols=224 Identities=11% Similarity=0.085 Sum_probs=147.0
Q ss_pred CceEEEEEcCCCCcEEEEEeCC---C--eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC
Q 001343 345 STVISMDFHPSHQTLLLVGSSN---G--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~d---g--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~ 419 (1096)
..+.+++|||||++ ||.++.+ + .|.+|++.+++... +..+.. +..++|+|||+
T Consensus 59 ~~~~~~~~SpDg~~-la~~~~~~~~~~~~l~~~~~~~g~~~~--------------------l~~~~~-~~~~~wspdg~ 116 (347)
T 2gop_A 59 ENATMPRISPDGKK-IAFMRANEEKKVSEIWVADLETLSSKK--------------------ILEAKN-IRSLEWNEDSR 116 (347)
T ss_dssp ESCEEEEECTTSSE-EEEEEEETTTTEEEEEEEETTTTEEEE--------------------EEEESE-EEEEEECTTSS
T ss_pred ccCCCeEECCCCCE-EEEEEeccCCCcceEEEEECCCCceEE--------------------EEcCCC-ccceeECCCCC
Confidence 57899999999995 5555433 3 47788888776442 222233 99999999999
Q ss_pred EEEEEECC---------------------------CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe
Q 001343 420 YVGVAFTK---------------------------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG 472 (1096)
Q Consensus 420 ~l~s~~~d---------------------------g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s 472 (1096)
.|+.++.+ ..|.+||+.+++.++. +.. . .+..+.|+||| ++++++
T Consensus 117 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~---l~~-~-~~~~~~~spdg---~~~~~~ 188 (347)
T 2gop_A 117 KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEE---FEK-P-RFSSGIWHRDK---IVVNVP 188 (347)
T ss_dssp EEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEE---EEE-E-TTCEEEEETTE---EEEEEE
T ss_pred EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEee---ecC-C-CcccccCCCCe---EEEEEe
Confidence 99988642 5799999988765332 333 3 78899999998 344444
Q ss_pred CCC-------cEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC--------CeEEEEEcCCCCeeeEEeC
Q 001343 473 DDK-------LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID--------GKIKAWLYDTMGSRVDYDA 536 (1096)
Q Consensus 473 ~d~-------~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~ 536 (1096)
.++ ...+|. .++ ....+..+ ..+..+ +| +|+.|+.++.+ ..|.+|| +++.......
T Consensus 189 ~~~~~~~~~~~~~l~~~d~~-~~~~l~~~-~~~~~~--sp--dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~ 260 (347)
T 2gop_A 189 HREIIPQYFKFWDIYIWEDG-KEEKMFEK-VSFYAV--DS--DGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE 260 (347)
T ss_dssp CCCSSCCSSCCEEEEEEETT-EEEEEEEE-ESEEEE--EE--CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT
T ss_pred cccccccccccccEEEeCCC-ceEEeccC-cceeeE--CC--CCCEEEEEEccccCCccccceEEEEC--CCceEecccc
Confidence 432 345554 344 34444444 445443 44 67778777654 3677777 3333333334
Q ss_pred CCCcEEE-EEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeE-EEEeC
Q 001343 537 PGHWCTT-MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI-KFWDM 614 (1096)
Q Consensus 537 ~~~~i~~-l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i-~iwd~ 614 (1096)
+...+.. +.|+ ++ .+++++. ++.+++| +.+++......+ .. .+..+.|+| ..+++++.++.. .+|.+
T Consensus 261 ~~~~~~~~~~~s-dg-~~~~~~~----~~~~~l~-~~~g~~~~~~~~-~~-~v~~~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 261 VDRGVGQAKIKD-GK-VYFTLFE----EGSVNLY-IWDGEIKPIAKG-RH-WIMGFDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp CCSEEEEEEEET-TE-EEEEEEE----TTEEEEE-EESSSEEEEECS-SS-EEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred CCcccCCccEEc-Cc-EEEEEec----CCcEEEE-EcCCceEEEecC-CC-eEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence 4557776 8999 88 7777766 7788888 776666444433 33 788899998 677777766654 66666
Q ss_pred CCCe
Q 001343 615 DNVN 618 (1096)
Q Consensus 615 ~~~~ 618 (1096)
+ ++
T Consensus 330 ~-g~ 332 (347)
T 2gop_A 330 D-GE 332 (347)
T ss_dssp S-SS
T ss_pred C-Cc
Confidence 5 54
No 198
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=6.6e-08 Score=119.46 Aligned_cols=545 Identities=10% Similarity=0.029 Sum_probs=305.4
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeec-------ccccCEEEEEEecCCCcEEEEEEeCCCcEE
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-------AHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~-------~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~ 478 (1096)
...|.+|.-.++|. |-.|+.+| +..||-.. ++....-. -....|.++...++|. .|-.|+.++-+.
T Consensus 18 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~---f~~~~~~~~~~~~~~l~~n~I~~i~~d~~g~--~lWigt~~~Gl~ 90 (781)
T 3v9f_A 18 NNYVLSITQDKQGF-LWFATEEG-LNKFDGTR---FITYYKEEQSSSVQSITGNELNEVYTDPVQP--VIWIATQRAGLN 90 (781)
T ss_dssp CSBEEEEEECTTSC-EEEEESSC-EEEECSSS---EEEECCCSSCSSSCCCSCSCEEEEEECSSSS--EEEEEESSSCEE
T ss_pred cCEeEEEEECCCCC-EEEccCCc-CccccCCc---eEEEEcCCCCCccccccccccceEEEcCCCC--EEEEEeCCCCcc
Confidence 46799999998885 55677776 44555332 22111100 0134588998887775 366677775799
Q ss_pred EEE-cCCceEEEeeC--------CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe-----CCCCcEEEE
Q 001343 479 VWE-LSGRKLFNFEG--------HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-----APGHWCTTM 544 (1096)
Q Consensus 479 iwd-~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~l 544 (1096)
.|| .+++. ..+.. ....|.++......++ .|..++.++.|..||..+........ .....|.++
T Consensus 91 ~~d~~~~~f-~~~~~~~~~~~~l~~~~i~~i~~d~~~~g-~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i 168 (781)
T 3v9f_A 91 AYNYETQSF-SVYQYNPEDPQSLITNDVTHITSSVQAGK-GLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTA 168 (781)
T ss_dssp EEETTTTEE-EEECCCTTCSSSCSCSCEEEEEECSSTTS-EEEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEE
T ss_pred eECCCCCeE-EeeccccCCCCCcccCcceEEEecCccCC-CEEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEE
Confidence 999 54443 33311 1235777765321033 46667755567788876544322211 123468888
Q ss_pred EEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcC------cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe
Q 001343 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 545 ~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1096)
...++|...+ ++. .+-|..||..+++....... .....+.++...+++... .|+.+ .+.+||..+++
T Consensus 169 ~~d~~g~lwi-gt~----~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lw-igt~~-Gl~~~d~~~~~ 241 (781)
T 3v9f_A 169 TEAEDGKLYI-GHV----EGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIW-IGTSK-GLALFNANTET 241 (781)
T ss_dssp EEEETTEEEE-EET----TTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEE-EEETT-EEEEEETTTTE
T ss_pred EECCCCCEEE-Eec----CCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEE-EEeCC-cHheECCCCCc
Confidence 8877776555 332 44688999887765432111 112357778887777644 45555 69999987765
Q ss_pred EEEEeecC-----CCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCcccc-cc-------ccCCCcccccCcceeEEe
Q 001343 619 ILTSTDAE-----GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL-RA-------VENPPFEALRTPIESVAL 685 (1096)
Q Consensus 619 ~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~-------~~~~~~~~~~~~v~~~~~ 685 (1096)
........ -....|.++...++|.+. .|+..+-|.+++..++.-.. .. ............|.++..
T Consensus 242 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~ 320 (781)
T 3v9f_A 242 FTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQ 320 (781)
T ss_dssp EEC-----------CCCCEEEEEECTTSEEE-EEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEE
T ss_pred EEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEE
Confidence 54322111 112368888888877644 56665668888886652110 00 000111222344666666
Q ss_pred ecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcC-----CC
Q 001343 686 KVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP-----ES 760 (1096)
Q Consensus 686 s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-----~~ 760 (1096)
..+|..-+++.. +-|..++.. ...+..+... ..
T Consensus 321 D~~g~lWigt~~--------------------------------------~Gl~~~~~~----~~~~~~~~~~~~~~~~~ 358 (781)
T 3v9f_A 321 DSFNNIWIGTWG--------------------------------------GGINFISNA----PPTFHTWSYSPTQMNES 358 (781)
T ss_dssp CSSCCEEEEEBS--------------------------------------SCEEEECSS----CCSCEEEC----CCCSS
T ss_pred eCCCCEEEEecC--------------------------------------CeEEEeCCC----CCcceeeccCccccccC
Confidence 666665544433 333333332 1222221110 00
Q ss_pred CCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeec
Q 001343 761 TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1096)
Q Consensus 761 ~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s 840 (1096)
......|.++...++|. +-.++.++-+..|+...... ..+... ..+ ....|.+++..
T Consensus 359 ~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~------------~~~~~~------~~~----~~~~v~~i~~d 415 (781)
T 3v9f_A 359 SLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVA------------IYNKEN------REL----LSNSVLCSLKD 415 (781)
T ss_dssp CCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEE------------ECC-----------C----CCSBEEEEEEC
T ss_pred CCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeE------------EEccCC------CCC----CCcceEEEEEC
Confidence 11345789999888887 55566555677776422110 000000 001 34678999998
Q ss_pred CCCcEEEEecCCeEEEEEcccceEEEeec--CCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccc
Q 001343 841 KNDSYVMSATGGKISLFNMMTFKVMTTFM--SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKR 918 (1096)
Q Consensus 841 ~dg~~la~~~dg~v~iwd~~~~~~~~~~~--~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~ 918 (1096)
++|++.+...++.|..++..+++...... .....|.++...+ ++++. .|+.. -|..|+..+++ ..
T Consensus 416 ~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lw-igt~~-Gl~~~~~~~~~-~~--------- 482 (781)
T 3v9f_A 416 SEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIW-IGTHA-GVFVIDLASKK-VI--------- 482 (781)
T ss_dssp TTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEE-EEETT-EEEEEESSSSS-CC---------
T ss_pred CCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEE-EEECC-ceEEEeCCCCe-EE---------
Confidence 88887775446779999987765533221 2346788998887 67544 45554 58888877665 00
Q ss_pred cceeeecCC---CCCCCCCceEEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEec
Q 001343 919 KSVTIHIPA---GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC 995 (1096)
Q Consensus 919 ~~~~~~~~~---~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~ 995 (1096)
...... ... ..|.++...++|...+.+.++.|..||..+++..............|.++...++|.+.+ ++.
T Consensus 483 ---~~~~~~~~~~~~-~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-~T~ 557 (781)
T 3v9f_A 483 ---HHYDTSNSQLLE-NFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWL-ATG 557 (781)
T ss_dssp ---EEECTTTSSCSC-SCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEE-EET
T ss_pred ---ecccCccccccc-ceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEE-EEC
Confidence 011111 001 268889999999877776656688899877654322111110145788998888888766 445
Q ss_pred CCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCC
Q 001343 996 DGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1062 (1096)
Q Consensus 996 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~ 1062 (1096)
+|-|..||..++++... ....-++.. .|. ++...+ +|++.++ +.+| |..++..++
T Consensus 558 ~Glv~~~d~~~~~~~~~-~~~~gl~~~------~i~--~i~~d~-~g~lW~~-t~~G-l~~~~~~~~ 612 (781)
T 3v9f_A 558 EGLVCFPSARNFDYQVF-QRKEGLPNT------HIR--AISEDK-NGNIWAS-TNTG-ISCYITSKK 612 (781)
T ss_dssp TEEEEESCTTTCCCEEE-CGGGTCSCC------CCC--EEEECS-SSCEEEE-CSSC-EEEEETTTT
T ss_pred CCceEEECCCCCcEEEc-cccCCCCCc------eEE--EEEECC-CCCEEEE-cCCc-eEEEECCCC
Confidence 66558899888775432 222222222 466 477776 6766554 4444 666665543
No 199
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.47 E-value=9.5e-12 Score=134.91 Aligned_cols=295 Identities=10% Similarity=0.074 Sum_probs=194.5
Q ss_pred EEEcCCCCcEEEEEeC----CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE
Q 001343 350 MDFHPSHQTLLLVGSS----NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 350 v~fsp~g~~llasg~~----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~ 425 (1096)
....|++++++++-.. ++.|.+.|..+++.+.. +.....+ . +++||||++|+++.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~-------------------I~vG~~P-~-va~spDG~~lyVan 96 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGGFLP-N-PVVADDGSFIAHAS 96 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEECSSC-E-EEECTTSSCEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEE-------------------EECCCCC-c-EEECCCCCEEEEEc
Confidence 4456888865555443 68999999999988754 1212223 4 99999999988775
Q ss_pred ----------CCCeEEEEEccCCCccccceeecc-----cccCEEEEEEecCCCcEEEEEEe--CCCcEEEEE-cCCceE
Q 001343 426 ----------TKHLIQLYSYAGSNDLRQHSQIDA-----HVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE-LSGRKL 487 (1096)
Q Consensus 426 ----------~dg~i~vwd~~~~~~~~~~~~l~~-----h~~~v~~l~~s~d~~~~~l~s~s--~d~~i~iwd-~~~~~~ 487 (1096)
.++.|.+||..+++.+..+. +.. .......++|+|||+ +++.+. .++.|.++| .+++.+
T Consensus 97 ~~~~r~~~G~~~~~VsviD~~t~~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk--~lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 97 TVFSRIARGERTDYVEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGK--TLLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp EEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSS--EEEEEECSSSCEEEEEETTTTEEE
T ss_pred ccccccccCCCCCEEEEEECCCCeEEEEEE-CCCccccccCCCCceEEEcCCCC--EEEEEEcCCCCeEEEEECCCCcEE
Confidence 35789999999988766432 111 112456799999999 455444 378999999 888888
Q ss_pred EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC-CCeeeEEeC----CCCcE-EEEEE-cCCCCEEEEEeecc
Q 001343 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDA----PGHWC-TTMLY-SADGSRLFSCGTSK 560 (1096)
Q Consensus 488 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~----~~~~i-~~l~~-s~~~~~l~~~~~~~ 560 (1096)
.++.... . ..+.|.+ ...+++.+.||.+.+.++.. +........ ....+ ....| .++|+++++..
T Consensus 174 ~tI~v~g--~--~~~~P~g-~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--- 245 (386)
T 3sjl_D 174 RMLDVPD--C--YHIFPTA-PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--- 245 (386)
T ss_dssp EEEECCS--E--EEEEEEE-TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT---
T ss_pred EEEECCC--c--ceeecCC-CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC---
Confidence 8875322 1 1222332 35677888999999999876 333221111 11122 12355 46776655433
Q ss_pred CCCCeEEEEeCCCCe--eeEEEc---------CcCccceEEEEEeCCCCEEEEEEc----------CCeEEEEeCCCCeE
Q 001343 561 DGDSFLVEWNESEGT--IKRTYA---------GFRKKSNGVVQFDTTQNHFLAVGE----------DSQIKFWDMDNVNI 619 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~--~~~~~~---------~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~ 619 (1096)
++.+++.|..++. ....+. +........++++++++.+++... .+.|.++|+.+++.
T Consensus 246 --~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv 323 (386)
T 3sjl_D 246 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 323 (386)
T ss_dssp --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred --CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence 7899999997654 333332 100112233777999998888653 25799999999999
Q ss_pred EEEeecCCCCCCccEEEEeCCCC-EEEEEE-CCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecC
Q 001343 620 LTSTDAEGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1096)
Q Consensus 620 ~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 688 (1096)
+..+.... .+..+++++|++ +|++.. .++.|.++|..++ +.++.+..... .+.+.+++|
T Consensus 324 ~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~-k~~~~i~~~~~------p~~l~~s~d 384 (386)
T 3sjl_D 324 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVNQLGH------GPQVITTAD 384 (386)
T ss_dssp EEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTC-CEEEEECCCCS------SCCEEEECC
T ss_pred EEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCC-cEEEEecCCCC------CceeEECCc
Confidence 99887643 578999999996 666654 5899999999988 55555544322 334666655
No 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.46 E-value=5.8e-12 Score=133.95 Aligned_cols=239 Identities=8% Similarity=-0.095 Sum_probs=166.6
Q ss_pred CEEEEEEcCCCCEEE-EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCce
Q 001343 408 SVSRVAWSPDGNYVG-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK 486 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~ 486 (1096)
...+++++++|+.++ +...++.|.+||..++.... ....+...+.+++++++++ ++++.. ++.|.+||..+..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---LPFNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE---CCCCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTTCSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce---EeeCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCCCce
Confidence 688999999999777 44678899999976643221 1123345688999999998 666666 8899999955555
Q ss_pred EEEeeC-CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCe
Q 001343 487 LFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1096)
Q Consensus 487 ~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~ 565 (1096)
...+.. ....+.++++.+ ++.++++...++.|.+|+..+.............+..++++++|+.+++... ++.
T Consensus 99 ~~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~----~~~ 172 (270)
T 1rwi_B 99 QTVLPFDGLNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NNR 172 (270)
T ss_dssp CEECCCCSCSSEEEEEECT--TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG----GTE
T ss_pred EeeeecCCcCCCcceEECC--CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC----CCE
Confidence 444432 235688898865 5677777777899999976544333222222336788999999986666543 678
Q ss_pred EEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEE
Q 001343 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1096)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 645 (1096)
|.+||..+........... ..+..++++++|..+++...++.|.+|+........ ... .+...+.+++++++|++++
T Consensus 173 i~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~l~v 249 (270)
T 1rwi_B 173 VVKLEAESNNQVVLPFTDI-TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRTVYV 249 (270)
T ss_dssp EEEECTTTCCEEECCCSSC-CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCCEEE
T ss_pred EEEEecCCCceEeecccCC-CCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECCCCCEEE
Confidence 9999988766543322222 357789999999777776678899999987654433 221 1223688999999999888
Q ss_pred EEECCCcEEEEEcCCC
Q 001343 646 VTTADNGFKILANAIG 661 (1096)
Q Consensus 646 ~~~~dg~i~iwd~~~~ 661 (1096)
+...++.|+++++...
T Consensus 250 ~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 250 ADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEGGGTEEEEECCCGG
T ss_pred EECCCCEEEEEcCCCc
Confidence 8888999999998654
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.44 E-value=2.9e-10 Score=125.73 Aligned_cols=274 Identities=7% Similarity=-0.046 Sum_probs=178.6
Q ss_pred EEcCCCCcEEEEEe-CCC---eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE-
Q 001343 351 DFHPSHQTLLLVGS-SNG---EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF- 425 (1096)
Q Consensus 351 ~fsp~g~~llasg~-~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~- 425 (1096)
...|++++++++-. ... .|.+||..+++.+.. +.....+ .+++||||++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 34467764333322 222 899999999887643 1112223 899999999999885
Q ss_pred ---------CCCeEEEEEccCCCccccceeec--c---cccCEEEEEEecCCCcEEEEEEeC--CCcEEEEEcCCceEEE
Q 001343 426 ---------TKHLIQLYSYAGSNDLRQHSQID--A---HVGAVNDLAFAYPNKLLCVVTCGD--DKLIKVWELSGRKLFN 489 (1096)
Q Consensus 426 ---------~dg~i~vwd~~~~~~~~~~~~l~--~---h~~~v~~l~~s~d~~~~~l~s~s~--d~~i~iwd~~~~~~~~ 489 (1096)
.++.|.+||..+.+.+..+. +. . +......+.|+|||+ +|+.+.. ++.|.++|.+++.+..
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD~t~~~~~~ 162 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVVQGGSSDDQ 162 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEECCCCEEeE
Confidence 36789999998876655332 11 0 012356899999999 5665553 5789999933455545
Q ss_pred -eeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEe-----CCCCc-EEEEEEcCCCCEEEEEeeccCC
Q 001343 490 -FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-----APGHW-CTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 490 -~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~-i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
+.. .. ++.+.+.+. ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+.
T Consensus 163 ~i~~-~~---~~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---- 232 (373)
T 2mad_H 163 LLSS-PT---CYHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY---- 232 (373)
T ss_pred EcCC-Cc---eEEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC----
Confidence 432 11 233444433 45677888999999999 665552221 11112 233456666665554443
Q ss_pred CCeEEEEeCCCCe--eeEEEcCc---------CccceEEEEEeCCCCEEEEEEc----------CCeEEEEeCCCCeEEE
Q 001343 563 DSFLVEWNESEGT--IKRTYAGF---------RKKSNGVVQFDTTQNHFLAVGE----------DSQIKFWDMDNVNILT 621 (1096)
Q Consensus 563 ~~~i~iwd~~~~~--~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~ 621 (1096)
.+.+.+.|+.++. .+..+... .......+.++++++.++++.. .+.|.++|..+++.+.
T Consensus 233 ~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~ 312 (373)
T 2mad_H 233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS 312 (373)
T ss_pred CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE
Confidence 6789999987552 22333211 0112334788999998888653 3579999999999999
Q ss_pred EeecCCCCCCccEEEEeCCCC-EEEEEE-CCCcEEEEEcCCC
Q 001343 622 STDAEGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIG 661 (1096)
Q Consensus 622 ~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~ 661 (1096)
.+.... ....++|+|||+ +++++. .++.|.+||..++
T Consensus 313 ~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 313 QISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred EEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 886543 578999999999 777776 5899999999888
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.43 E-value=9.5e-12 Score=152.82 Aligned_cols=245 Identities=10% Similarity=0.032 Sum_probs=162.0
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECC-----CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCc--
Q 001343 404 DVPISVSRVAWSPDGNYVGVAFTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-- 476 (1096)
Q Consensus 404 ~h~~~V~~l~~spd~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~-- 476 (1096)
+|...+..++|||||++||.++.+ ..|++||+.+++.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 445578999999999999987654 3699999999876442 112222367899999 8 6666666554
Q ss_pred ------------EEEEE-cCCce--EEEee--CCCCCeEEEEeeecCCCcEEEEEECCC-----eEEEEEcCCC--Ceee
Q 001343 477 ------------IKVWE-LSGRK--LFNFE--GHEAPVYSICPHHKENIQFIFSTAIDG-----KIKAWLYDTM--GSRV 532 (1096)
Q Consensus 477 ------------i~iwd-~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~--~~~~ 532 (1096)
|++|+ .++.. ...+. .+...+.++.|+| ||++|+..+.++ .|.+||+.++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS--DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC--CCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 88999 44442 22233 3334577888865 778888777554 8999999876 3134
Q ss_pred EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC--eeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEE
Q 001343 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIK 610 (1096)
Q Consensus 533 ~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 610 (1096)
.+..+...+.... +|+|+.|+..+........|++||+.++ +....+..+.. .+..+.+. ++..+++...|+..+
T Consensus 311 ~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~l~~~~~~-~~~lv~~~~~dg~~~ 387 (741)
T 1yr2_A 311 ALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD-NLESVGIA-GNRLFASYIHDAKSQ 387 (741)
T ss_dssp EEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS-EEEEEEEE-BTEEEEEEEETTEEE
T ss_pred EecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC-eEEEEEEE-CCEEEEEEEECCEEE
Confidence 4444444444443 4899999887754333677999999875 34444444333 56667776 556677788888877
Q ss_pred EEeCC-CCeEEEEeecCCCCCCccEEEEeCCCCEEEEEE----CCCcEEEEEcCCC
Q 001343 611 FWDMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT----ADNGFKILANAIG 661 (1096)
Q Consensus 611 iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~ 661 (1096)
+|.++ ++.....+.... ...+..+.++|++..++... ..++|.+||+.++
T Consensus 388 l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 388 VLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 77554 455556565432 23678889999887665332 2478999999877
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.43 E-value=8.3e-11 Score=127.54 Aligned_cols=293 Identities=8% Similarity=-0.046 Sum_probs=186.9
Q ss_pred ecCCCcEEEEEEC-----CCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeec------cCCCCeEEEEeCC
Q 001343 504 HKENIQFIFSTAI-----DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNES 572 (1096)
Q Consensus 504 ~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~------~~~~~~i~iwd~~ 572 (1096)
|.++++.+++... ++.|.+.|..+.+.+..+.....+ . ++++|||++++++... ...++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 4557778887765 689999999998888777655555 4 9999999998877520 0015689999999
Q ss_pred CCeeeEEEcCcC------ccceEEEEEeCCCCEEEEEEc--CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEE
Q 001343 573 EGTIKRTYAGFR------KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1096)
Q Consensus 573 ~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 644 (1096)
+++.+.++.... ......+.++|+|++++++.. ++.|.++|+.+++.+..+...+ . ...+....+.+
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~-~~~~P~g~~~~ 192 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----C-YHIFPTAPDTF 192 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----E-EEEEEEETTEE
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----c-ceeecCCCcee
Confidence 999998875321 112344899999999998874 6899999999999999987542 1 22333345677
Q ss_pred EEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCC
Q 001343 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRS 724 (1096)
Q Consensus 645 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~ 724 (1096)
++.+.||.+.+.++.+..+...... . .|.++
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~-~------------~~~~~------------------------------------ 223 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHT-E------------VFHPE------------------------------------ 223 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEEC-C------------CCSCT------------------------------------
T ss_pred EEECCCCCEEEEECCCCCeEEEeec-c------------eeccc------------------------------------
Confidence 7888899998888865212110000 0 00000
Q ss_pred CCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEe-cCCceEEEeecCCeEEEeeccCCccCCCCc
Q 001343 725 MDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYT-NSAVGLLALGSNGVQKLWKWHRNEQNPSGK 803 (1096)
Q Consensus 725 d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~ 803 (1096)
...++ ....|. ++|+.++ .+.+|.+.+.|+.......
T Consensus 224 ------------~~~~~--------------------------~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v--- 261 (386)
T 3sjl_D 224 ------------DEFLI--------------------------NHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKF--- 261 (386)
T ss_dssp ------------TSCBC--------------------------SCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEE---
T ss_pred ------------ccccc--------------------------ccceeEcCCCcEEE-EeCCCEEEEEECCCCccee---
Confidence 00000 001333 4564333 4446777777764322100
Q ss_pred eeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecC-----------CeEEEEEcccceEEEeecCCC
Q 001343 804 ATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG-----------GKISLFNMMTFKVMTTFMSPP 872 (1096)
Q Consensus 804 ~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~d-----------g~v~iwd~~~~~~~~~~~~h~ 872 (1096)
+.-|++.+...+. .| -.......++++++++.++.... +.|.+.|+.+++.++++...
T Consensus 262 ------~~~~~~~~~~~~~---~g-~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg- 330 (386)
T 3sjl_D 262 ------LPAVEALTEAERA---DG-WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG- 330 (386)
T ss_dssp ------CCCEESSCHHHHH---TT-EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-
T ss_pred ------ecceecccccccc---cc-ccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-
Confidence 0111110000000 00 01234456888999988777641 46999999999999987532
Q ss_pred CCeeEEEEecCCCc-EEEEe-eCCCeEEEEeeccce
Q 001343 873 PASTFLAFHPQDNN-IIAIG-TEDSTIHIYNVRVDE 906 (1096)
Q Consensus 873 ~~i~~l~~s~~d~~-~l~s~-~~dg~i~iw~~~~~~ 906 (1096)
..+.+|+|++ |++ +|+++ ..++.|.++|..+++
T Consensus 331 ~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 331 HEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp EEECEEEECS-SSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCcceEEECC-CCCeEEEEEcCCCCeEEEEECCCCc
Confidence 3678999999 776 66654 558999999999987
No 204
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.43 E-value=2.1e-11 Score=128.94 Aligned_cols=216 Identities=11% Similarity=0.011 Sum_probs=166.8
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCccccceeecccc-cCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCC
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE 494 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~-~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 494 (1096)
..+++|++++.++.|.+||.++|+.+. .+..+. ..+.++.++|+|+ +++ +.++.|..||.+|+.+..+..+.
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w---~~~~~~~~~~~~~~~~pdG~--ilv--s~~~~V~~~d~~G~~~W~~~~~~ 75 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVW---EYPLEKGWECNSVAATKAGE--ILF--SYSKGAKMITRDGRELWNIAAPA 75 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEE---EEECCTTCCCCEEEECTTSC--EEE--ECBSEEEEECTTSCEEEEEECCT
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEE---EeCCCccCCCcCeEECCCCC--EEE--eCCCCEEEECCCCCEEEEEcCCC
Confidence 346789999999999999998998776 344454 4789999999998 677 45788999998899999988753
Q ss_pred -CCeEEEEeeecCCCcEEEEEEC-CCeEEEEEcCCCCeeeEEeCCC------CcEEEEEEcCCCCEEEEEeeccCCCCeE
Q 001343 495 -APVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVDYDAPG------HWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1096)
Q Consensus 495 -~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~------~~i~~l~~s~~~~~l~~~~~~~~~~~~i 566 (1096)
..+.++.+.+ +|+++++.+. ++.|..+|. .++.+..+.... .....+++.++|+++++... ++.|
T Consensus 76 ~~~~~~~~~~~--dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~----~~~v 148 (276)
T 3no2_A 76 GCEMQTARILP--DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA----TSEV 148 (276)
T ss_dssp TCEEEEEEECT--TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT----TTEE
T ss_pred CccccccEECC--CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC----CCEE
Confidence 4677777654 7789988887 788877775 455555443211 13445678899999998765 8899
Q ss_pred EEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCC----CCCCccEEEEeCCCC
Q 001343 567 VEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG----GLPNLPRLRFSKEGN 642 (1096)
Q Consensus 567 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~ 642 (1096)
..||.. |+.+.++.... ....+...++++.+++++.++.|..+|..+|+.+..+.... ....+..+...++|+
T Consensus 149 ~~~d~~-G~~~w~~~~~~--~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~ 225 (276)
T 3no2_A 149 REIAPN-GQLLNSVKLSG--TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGG 225 (276)
T ss_dssp EEECTT-SCEEEEEECSS--CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSC
T ss_pred EEECCC-CCEEEEEECCC--CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCC
Confidence 999998 99999988753 34456778999999998888899999999999998886432 112367788889999
Q ss_pred EEEEEE
Q 001343 643 LLAVTT 648 (1096)
Q Consensus 643 ~l~~~~ 648 (1096)
++++..
T Consensus 226 i~v~~~ 231 (276)
T 3no2_A 226 LYICNW 231 (276)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 888875
No 205
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.43 E-value=3.4e-11 Score=131.63 Aligned_cols=245 Identities=9% Similarity=0.014 Sum_probs=169.9
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 424 (1096)
.....+++.. ++ ++++...++.|.+||..+++.+.+ +. .......++++++++..++.
T Consensus 44 ~~~~~i~~~~-~~-lyv~~~~~~~v~viD~~t~~~~~~-------------------i~-~~~~p~~i~~~~~g~lyv~~ 101 (328)
T 3dsm_A 44 DVAQSMVIRD-GI-GWIVVNNSHVIFAIDINTFKEVGR-------------------IT-GFTSPRYIHFLSDEKAYVTQ 101 (328)
T ss_dssp SCEEEEEEET-TE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EE-CCSSEEEEEEEETTEEEEEE
T ss_pred ccceEEEEEC-CE-EEEEEcCCCEEEEEECcccEEEEE-------------------cC-CCCCCcEEEEeCCCeEEEEE
Confidence 4567788753 33 677777789999999999988653 21 34578899999998544444
Q ss_pred ECCCeEEEEEccCCCccccceeecc---cccCEEEEEEecCCCcEEEEEEe-CCCcEEEEE-cCCceEEEeeCCCCCeEE
Q 001343 425 FTKHLIQLYSYAGSNDLRQHSQIDA---HVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~l~~---h~~~v~~l~~s~d~~~~~l~s~s-~d~~i~iwd-~~~~~~~~~~~~~~~v~~ 499 (1096)
..++.|.+||..+++....+. ... +......+++ .++. ++++.. .++.|.++| .+++.+..+.... ....
T Consensus 102 ~~~~~v~~iD~~t~~~~~~i~-~g~~~~~~~~p~~i~~-~~~~--lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~ 176 (328)
T 3dsm_A 102 IWDYRIFIINPKTYEITGYIE-CPDMDMESGSTEQMVQ-YGKY--VYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTS 176 (328)
T ss_dssp BSCSEEEEEETTTTEEEEEEE-CTTCCTTTCBCCCEEE-ETTE--EEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCC
T ss_pred CCCCeEEEEECCCCeEEEEEE-cCCccccCCCcceEEE-ECCE--EEEEcCCCCCEEEEEECCCCeEEEEEEcCC-Cccc
Confidence 478999999999887654321 111 1114556777 3443 445444 489999999 8888887776433 3456
Q ss_pred EEeeecCCCcEEEEEECC----------CeEEEEEcCCCCeeeEEeCC-CCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 500 ICPHHKENIQFIFSTAID----------GKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 500 ~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
+.+.+ +|++++++..+ +.|.++|..+.+....+... ......++++|+++.++++. ..|.+
T Consensus 177 i~~~~--dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~------~~v~~ 248 (328)
T 3dsm_A 177 LVMDK--YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN------NDIWR 248 (328)
T ss_dssp CEECT--TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES------SSEEE
T ss_pred eEEcC--CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc------cEEEE
Confidence 77754 66766666544 78999999887766555543 34689999999999998863 38999
Q ss_pred EeCCCCeeeEE-EcCcCccceEEEEEeCCC-CEEEEE----EcCCeEEEEeCCCCeEEEEeec
Q 001343 569 WNESEGTIKRT-YAGFRKKSNGVVQFDTTQ-NHFLAV----GEDSQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 569 wd~~~~~~~~~-~~~~~~~~i~~~~~~~~~-~~l~~~----~~dg~i~iwd~~~~~~~~~~~~ 625 (1096)
||..+++.... +..........++++|++ ..+++. ..++.|.+||.. ++.+..+..
T Consensus 249 ~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 249 MPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp EETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred EECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 99988876421 111112357779999954 445554 468899999998 888877764
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.39 E-value=3e-11 Score=148.34 Aligned_cols=244 Identities=8% Similarity=-0.040 Sum_probs=156.6
Q ss_pred CCCceEEEEEcCCCCcEEEEEeC-CC----eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSS-NG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~-dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1096)
|...+..++|||||++ ||.++. +| .|++||+.+|+.+.. ..+...+..++|+||
T Consensus 161 ~~~~~~~~~~SPDG~~-la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~~~~~~~~~wspD 219 (741)
T 1yr2_A 161 GATALDAWAASDDGRL-LAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELKWVKFSGLAWLGN 219 (741)
T ss_dssp --EEEEEEEECTTSSE-EEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEEEEESCCCEESTT
T ss_pred CCEEEEeEEECCCCCE-EEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCCCceeccEEEECC
Confidence 3347899999999995 555443 33 699999999887531 001112357899999
Q ss_pred CCEEEEEECCCe--------------EEEEEccCCCccc-cceeecccccCEEEEEEecCCCcEEEEEEeCC-----CcE
Q 001343 418 GNYVGVAFTKHL--------------IQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLI 477 (1096)
Q Consensus 418 ~~~l~s~~~dg~--------------i~vwd~~~~~~~~-~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d-----~~i 477 (1096)
+.|+.++.++. |++|++.++.... .+.....+...+..+.|+|||+ +|+..+.+ ..|
T Consensus 220 -~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~~l 296 (741)
T 1yr2_A 220 -DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR--WVVITSSEGTDPVNTV 296 (741)
T ss_dssp -SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--EEEEEEECTTCSCCEE
T ss_pred -CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC--EEEEEEEccCCCcceE
Confidence 99998877654 8899998765321 1112223444689999999999 56555543 489
Q ss_pred EEEE-cCC--ceEEEeeCCCCCeEEEEeeecCCCcEEEEEEC----CCeEEEEEcCCCC-e-eeEEeCCCCcEEEEEEcC
Q 001343 478 KVWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAI----DGKIKAWLYDTMG-S-RVDYDAPGHWCTTMLYSA 548 (1096)
Q Consensus 478 ~iwd-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~-~~~~~~~~~~i~~l~~s~ 548 (1096)
++|| .++ ++...+..+...+....+ + +|..|+..+. ++.|.+||+.+.. . ...+..+...+..+.++
T Consensus 297 ~~~d~~~~~~~~~~~l~~~~~~~~~~~~-~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~- 372 (741)
T 1yr2_A 297 HVARVTNGKIGPVTALIPDLKAQWDFVD-G--VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA- 372 (741)
T ss_dssp EEEEEETTEECCCEEEECSSSSCEEEEE-E--ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-
T ss_pred EEEECCCCCCcccEEecCCCCceEEEEe-c--cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-
Confidence 9999 555 315566666555555433 4 4566766665 4569999988752 3 33333444456677777
Q ss_pred CCCEEEEEeeccCCCCeEE--EEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE----cCCeEEEEeCCCCeE
Q 001343 549 DGSRLFSCGTSKDGDSFLV--EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNI 619 (1096)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~--iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 619 (1096)
++..+++... ++..+ +++. ++...+.+..+....+..+.++|+++.++... ..++|+.||+.+++.
T Consensus 373 ~~~lv~~~~~----dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 373 GNRLFASYIH----DAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp BTEEEEEEEE----TTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCEEEEEEEE----CCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4455555554 55544 4554 45556666654333677888999887665432 347899999988873
No 207
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.38 E-value=1.6e-10 Score=125.80 Aligned_cols=248 Identities=11% Similarity=0.049 Sum_probs=165.5
Q ss_pred CCCceEEEEEcCCCCcEEEE-------EeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 343 QGSTVISMDFHPSHQTLLLV-------GSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llas-------g~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
.-....+++|+++|+ ++++ +..++.|.+||..+++.... . . ....++...+.+++++
T Consensus 16 ~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---~---~---------~~~~~~~~~~~~i~~~ 79 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---C---K---------PEVNGYGGIPAGCQCD 79 (314)
T ss_dssp CCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE---E---C---------CEETTEECCEEEEEEC
T ss_pred cCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE---E---e---------cccCCCCCCCceEEEe
Confidence 345678999999998 6777 56789999999888775321 0 0 0012244679999999
Q ss_pred CC-CCEEEEEECCCeEEEEEccCCCcccc-ceeec-ccccCEEEEEEecCCCcEEEEEEeCC---------------CcE
Q 001343 416 PD-GNYVGVAFTKHLIQLYSYAGSNDLRQ-HSQID-AHVGAVNDLAFAYPNKLLCVVTCGDD---------------KLI 477 (1096)
Q Consensus 416 pd-~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~l~-~h~~~v~~l~~s~d~~~~~l~s~s~d---------------~~i 477 (1096)
++ |+++++ +..+.|.+||.+ ++.... ..... .....+.++++.++|+ +.++...+ +.|
T Consensus 80 ~~~g~l~v~-~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l 155 (314)
T 1pjx_A 80 RDANQLFVA-DMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp SSSSEEEEE-ETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred cCCCcEEEE-ECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeE
Confidence 99 665544 444579999988 553321 11011 1224588999999998 66666554 567
Q ss_pred EEEEcCCceEEEeeCCCCCeEEEEee--ecCCCcEEEEE-ECCCeEEEEEcC-CCCe-----eeEEeCCC-CcEEEEEEc
Q 001343 478 KVWELSGRKLFNFEGHEAPVYSICPH--HKENIQFIFST-AIDGKIKAWLYD-TMGS-----RVDYDAPG-HWCTTMLYS 547 (1096)
Q Consensus 478 ~iwd~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~s~-~~dg~i~iwd~~-~~~~-----~~~~~~~~-~~i~~l~~s 547 (1096)
..||..++.... ..+......++++ .+++++.++.+ ..++.|.+|+.+ .+.. ...+..+. ..+..++++
T Consensus 156 ~~~~~~g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d 234 (314)
T 1pjx_A 156 YCFTTDGQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD 234 (314)
T ss_dssp EEECTTSCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred EEECCCCCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence 777744554433 2333456788886 01366555544 567999999986 3321 11222222 567889999
Q ss_pred CCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCC
Q 001343 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDN 616 (1096)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 616 (1096)
++|+..++... ++.|..||..+++.+..+..+.. .+.+++++++++.|++++ .++.|..|++..
T Consensus 235 ~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 235 EDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTCCEEEEEET----TTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCCC-CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99988777654 77999999987887777766544 678899999999665554 568899999864
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.35 E-value=2.2e-09 Score=115.86 Aligned_cols=271 Identities=10% Similarity=-0.013 Sum_probs=182.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCC
Q 001343 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~ 484 (1096)
....+.+++++++|+..++...++.|.+||.. ++... . .+..+...+.++++.+++. +.++...++.|..||..+
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~v~~~d~~g 92 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-F-EVPTPDAKVMCLIVSSLGD--IWFTENGANKIGKLSKKG 92 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-E-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTTS
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-E-ECCCCCCcceeEEECCCCC--EEEEecCCCeEEEECCCC
Confidence 45678999999999988877778999999987 44322 1 2334456799999999998 677766688999999446
Q ss_pred ceEE-EeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEeCCCCcEEEEEEcCCCCEEEEEeeccCC
Q 001343 485 RKLF-NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 485 ~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
+... .+......+.++++.+ ++.++++...++.|..||.. ++... ........+..+++.++|+..++...
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~---- 165 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGL--NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQ---- 165 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECS--TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETT----
T ss_pred CeEEecCCCCCCCCccceECC--CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecC----
Confidence 5532 2222345688888865 56677776668899999877 43332 22223457899999999996655442
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCC
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 642 (1096)
.+.|..+|. +++............+..++++++++..++....+.|.+|+. +++.... ........+.+++++++|+
T Consensus 166 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~~d~~g~ 242 (300)
T 2qc5_A 166 NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIPTPNARPHAITAGKNSE 242 (300)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEEECSTTC
T ss_pred CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECCCCCCCceEEEECCCCC
Confidence 678999998 555544222122235778999999877766666778999998 5544432 2222233678999999999
Q ss_pred EEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecC
Q 001343 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (1096)
Q Consensus 643 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~ 696 (1096)
++++...++.|..|+. ++... .+.... ....+.+++++++|...++..
T Consensus 243 l~v~~~~~~~i~~~~~-~g~~~--~~~~~~---~~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 243 IWFTEWGANQIGRITN-DNTIQ--EYQLQT---ENAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp EEEEETTTTEEEEECT-TSCEE--EEECCS---TTCCCCCEEECTTSCEEEECS
T ss_pred EEEeccCCCeEEEECC-CCcEE--EEECCc---cCCccceeEeCCCCCEEEEcc
Confidence 7777666789999998 34211 111110 112356788888887665543
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.33 E-value=1.7e-10 Score=127.71 Aligned_cols=278 Identities=9% Similarity=0.077 Sum_probs=187.6
Q ss_pred CCCCcEEEEEeCC----CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE----
Q 001343 354 PSHQTLLLVGSSN----GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF---- 425 (1096)
Q Consensus 354 p~g~~llasg~~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~---- 425 (1096)
|++++++++...+ +.|.++|..+++.+.+. .--..+ .+++||||++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I-------------------~vG~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMT-------------------DGGFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEE-------------------EECSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEE-------------------ECCCCC--ceEECCCCCEEEEEecccc
Confidence 4566555554444 79999999999887641 112234 799999999988875
Q ss_pred ------CCCeEEEEEccCCCccccceeecc-----cccCEEEEEEecCCCcEEEEEEeC--CCcEEEEE-cCCceEEEee
Q 001343 426 ------TKHLIQLYSYAGSNDLRQHSQIDA-----HVGAVNDLAFAYPNKLLCVVTCGD--DKLIKVWE-LSGRKLFNFE 491 (1096)
Q Consensus 426 ------~dg~i~vwd~~~~~~~~~~~~l~~-----h~~~v~~l~~s~d~~~~~l~s~s~--d~~i~iwd-~~~~~~~~~~ 491 (1096)
.++.|.++|..+++.+..+. +.+ .......+.|+|||+ +++.+.. ++.|.+.| .+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk--~lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNK--NLLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCC--EEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999988766432 210 112356789999999 5555543 68999999 8888888776
Q ss_pred CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeE----EeCCCCc-EEEEEEcCCCCEEEEEeeccCCCCeE
Q 001343 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD----YDAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFL 566 (1096)
Q Consensus 492 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~-i~~l~~s~~~~~l~~~~~~~~~~~~i 566 (1096)
--. . ....|.+. ..+++.+.||.+.+.+..+++.... +.....+ ...+.+++++..++.... .+.+
T Consensus 218 v~g--~--~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPD--C--YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCS--E--EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCC--c--eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 322 1 22334333 5667778899888888854443321 1111111 123567899888877664 6789
Q ss_pred EEEeCCCCeee--EEEcCc---------CccceEEEEEeCCCCEEEEEEc----------CCeEEEEeCCCCeEEEEeec
Q 001343 567 VEWNESEGTIK--RTYAGF---------RKKSNGVVQFDTTQNHFLAVGE----------DSQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 567 ~iwd~~~~~~~--~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~ 625 (1096)
.+.|....... ..+... .......++++++++.+++... ++.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998655422 111100 0001112689999988877642 35799999999999998875
Q ss_pred CCCCCCccEEEEeCCCC-EEEEEE-CCCcEEEEEcCCCccccccc
Q 001343 626 EGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIGLRSLRAV 668 (1096)
Q Consensus 626 ~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~ 668 (1096)
.. ....++|+|||+ ++++.. .++.|.++|+.++ +.++.+
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~tI 409 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRSV 409 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEE
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEEe
Confidence 43 478999999998 888888 5899999999988 444443
No 210
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.33 E-value=5.1e-09 Score=115.77 Aligned_cols=265 Identities=9% Similarity=-0.032 Sum_probs=170.5
Q ss_pred CcceEEeecCCCceEEEEEcCCCCcEEEEEe---------CCCeEEEEecCCCCeeecccceeecccccCcccccccccc
Q 001343 334 PRTVAVSLHQGSTVISMDFHPSHQTLLLVGS---------SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 334 ~~~~~~~l~h~~~V~~v~fsp~g~~llasg~---------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
.++++.++.-...- .++|||||++++++.. .++.|.+||..+.+.+....+. . .....
T Consensus 56 t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~-----~-----~~~~~-- 122 (373)
T 2mad_H 56 SGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP-----D-----APRFD-- 122 (373)
T ss_pred CCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECC-----C-----ccccc--
Confidence 45566666633333 9999999996444432 3678999999988776431100 0 00000
Q ss_pred CCCCEEEEEEcCCCCEEEEEEC--CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEc
Q 001343 405 VPISVSRVAWSPDGNYVGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL 482 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~ 482 (1096)
+......++|+|||++|+++.. ++.|.++| .+++..... +. ..+ ++.+.|+++. .+++.+.||.+.++|.
T Consensus 123 ~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~--i~-~~~---~~~~~~~~~~-~~~~~~~dg~~~~vd~ 194 (373)
T 2mad_H 123 VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQL--LS-SPT---CYHIHPGAPS-TFYLLCAQGGLAKTDH 194 (373)
T ss_pred cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEE--cC-CCc---eEEEEeCCCc-eEEEEcCCCCEEEEEC
Confidence 1123458999999999998874 47899999 988765530 21 111 2556677765 5677788999999997
Q ss_pred CCceEEEee-----CCCCCe-EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee--EEeC----------CCCcEEEE
Q 001343 483 SGRKLFNFE-----GHEAPV-YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDA----------PGHWCTTM 544 (1096)
Q Consensus 483 ~~~~~~~~~-----~~~~~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~----------~~~~i~~l 544 (1096)
+++...... ....++ ....+.+. +..++..+..+.+.+.|+....... .+.. .......+
T Consensus 195 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~ 272 (373)
T 2mad_H 195 AGGAAGAGLVGAMLTAAQNLLTQPAQANK--SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQV 272 (373)
T ss_pred CCcEEEEEeccccccCCcceeecceeEec--CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeE
Confidence 555442221 112222 12233333 2333334477899999986543221 1111 11224457
Q ss_pred EEcCCCCEEEEEeecc------CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCC-EEEEEE-cCCeEEEEeCCC
Q 001343 545 LYSADGSRLFSCGTSK------DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVG-EDSQIKFWDMDN 616 (1096)
Q Consensus 545 ~~s~~~~~l~~~~~~~------~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~ 616 (1096)
.++++++.+++..... +..+.|.++|..+++.+.++.... ....+.|+|+|+ .++++. .++.|.+||..+
T Consensus 273 ~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~--~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH--DVDAISVAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred EECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC--CcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 8999999888765311 124689999999999999986533 467799999999 777776 589999999999
Q ss_pred CeEEEEe
Q 001343 617 VNILTST 623 (1096)
Q Consensus 617 ~~~~~~~ 623 (1096)
++.+..+
T Consensus 351 ~~vv~~i 357 (373)
T 2mad_H 351 GDQDQST 357 (373)
T ss_pred CCEEeee
Confidence 9998874
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.32 E-value=5e-10 Score=121.95 Aligned_cols=245 Identities=12% Similarity=0.036 Sum_probs=163.8
Q ss_pred CCCCEEEEEEcCCCCEEEE-------EECCCeEEEEEccCCCccccce-eecccccCEEEEEEecC-CCcEEEEEEeCCC
Q 001343 405 VPISVSRVAWSPDGNYVGV-------AFTKHLIQLYSYAGSNDLRQHS-QIDAHVGAVNDLAFAYP-NKLLCVVTCGDDK 475 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s-------~~~dg~i~vwd~~~~~~~~~~~-~l~~h~~~v~~l~~s~d-~~~~~l~s~s~d~ 475 (1096)
.-....+++|+++|+.+++ +..++.|.+||..+++...... ...++...+.+++++++ ++ ++++ +..+
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~--l~v~-~~~~ 92 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ--LFVA-DMRL 92 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE--EEEE-ETTT
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc--EEEE-ECCC
Confidence 3345789999999988887 5778899999988776432100 01135577999999999 65 4444 4455
Q ss_pred cEEEEEcCCceEEE-eeC----CCCCeEEEEeeecCCCcEEEEEECC---------------CeEEEEEcCCCCeeeEEe
Q 001343 476 LIKVWELSGRKLFN-FEG----HEAPVYSICPHHKENIQFIFSTAID---------------GKIKAWLYDTMGSRVDYD 535 (1096)
Q Consensus 476 ~i~iwd~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~~l~s~~~d---------------g~i~iwd~~~~~~~~~~~ 535 (1096)
.|.+||..++.... ... ....+.++++.+ +|.++++...+ +.|..|+.. ++. ..+.
T Consensus 93 ~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~ 168 (314)
T 1pjx_A 93 GLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY--EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-IQVD 168 (314)
T ss_dssp EEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT--TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-EEEE
T ss_pred CEEEEeCCCCEEEEEeccCCCccccCCcCEEECC--CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE-EEec
Confidence 79999944665432 221 123477888865 66677666554 566666654 332 2222
Q ss_pred CCCCcEEEEEEc----CCCCEEEEEeeccCCCCeEEEEeCC-CCee-----eEEEcCcCccceEEEEEeCCCCEEEEEEc
Q 001343 536 APGHWCTTMLYS----ADGSRLFSCGTSKDGDSFLVEWNES-EGTI-----KRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (1096)
Q Consensus 536 ~~~~~i~~l~~s----~~~~~l~~~~~~~~~~~~i~iwd~~-~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 605 (1096)
........++++ ++++.++++.. .++.|.+||.. +++. ...+..+.......++++++|+.+++...
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~---~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred cCCCCcceEEEecccCCCCCEEEEEEC---CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence 233356889999 99977666542 26789999976 4442 22233322025677999999988888878
Q ss_pred CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEE-ECCCcEEEEEcCCC
Q 001343 606 DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT-TADNGFKILANAIG 661 (1096)
Q Consensus 606 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~ 661 (1096)
++.|.+||..+++.+..+..+.. .+.+++|+++++.|+++ ..++.|..|++...
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~~--~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPFE--KPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSSS--CEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCEEEEEcCCCCcEeEEEeCCCC--CceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 89999999987777666665433 78999999999955544 45678999987643
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.27 E-value=1.2e-09 Score=122.71 Aligned_cols=237 Identities=11% Similarity=0.028 Sum_probs=160.9
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 424 (1096)
.....++|+|+|+ ++++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4689999999998 788877789999999987765421 111 22233 9999999999988
Q ss_pred ECCC--eEEEEEccCCCccccceeecc-cccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEe-----eCCCC
Q 001343 425 FTKH--LIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-----EGHEA 495 (1096)
Q Consensus 425 ~~dg--~i~vwd~~~~~~~~~~~~l~~-h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-----~~~~~ 495 (1096)
..++ .|.+|+..++........+.. ....+.+++++|++. .|+.+..++.|+.|| ..+. ...+ .++..
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g--~lyv~d~~~~I~~~d~~~~~-~~~~~~~~~~g~~~ 265 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE--WLYFVDSNKNFGRFNVKTQE-VTLIKQLELSGSLG 265 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS--EEEEECTTCEEEEEETTTCC-EEEEEECCCCSCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC--eEEEEECCCcEEEEECCCCC-EEEEecccccCCCC
Confidence 8765 788898877654332111112 456788999999555 344477788999999 4444 3333 22222
Q ss_pred Ce--EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC---------------CcEEEEEEcCCCCEEEEEe-
Q 001343 496 PV--YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------------HWCTTMLYSADGSRLFSCG- 557 (1096)
Q Consensus 496 ~v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~i~~l~~s~~~~~l~~~~- 557 (1096)
.- ..++|+|. ++.++++...++.|+.|+.+.. ...+.... .....++++++|+++++-.
T Consensus 266 ~~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~ 342 (409)
T 3hrp_A 266 TNPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGF 342 (409)
T ss_dssp CSSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETT
T ss_pred CCccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCC
Confidence 22 38899774 3466667677899999987643 22222221 3478999999999666543
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCcC--------------ccceEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGFR--------------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~--------------~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1096)
. ++.|+.|+..++... ++.++. -.....+++++++..+++-..++.|+.+++
T Consensus 343 ~----~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 343 K----GYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp T----TCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred C----CCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 3 789999998777643 333320 124677999999777777777788887765
No 213
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.27 E-value=1.2e-09 Score=120.85 Aligned_cols=291 Identities=9% Similarity=-0.030 Sum_probs=184.7
Q ss_pred cCCCcEEEEEECC-----CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeec------cCCCCeEEEEeCCC
Q 001343 505 KENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNESE 573 (1096)
Q Consensus 505 ~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~------~~~~~~i~iwd~~~ 573 (1096)
..++..+++.... +.|.++|..+.+.+..+.....+ .++++|||++++++... ...++.|.++|..+
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 3455666665543 79999999999888877766555 89999999999887521 01256899999999
Q ss_pred CeeeEEEcCc--C----ccceEEEEEeCCCCEEEEEEc--CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCC-CEE
Q 001343 574 GTIKRTYAGF--R----KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG-NLL 644 (1096)
Q Consensus 574 ~~~~~~~~~~--~----~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l 644 (1096)
++.+..+... . ......+.++|+|++++++.. ++.|.+.|+.+++.+..+.... +....|++ ..+
T Consensus 159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g------~~~~~p~g~~~~ 232 (426)
T 3c75_H 159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD------CYHIFPASPTVF 232 (426)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS------EEEEEEEETTEE
T ss_pred CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC------ceeeccCCCcEE
Confidence 9999887532 0 112334789999999999874 5789999999999998887532 13344433 566
Q ss_pred EEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCC
Q 001343 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRS 724 (1096)
Q Consensus 645 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~ 724 (1096)
++.+.||.+.+.+..++ +......
T Consensus 233 v~~~~dG~~~~V~~~~~-~v~~~~~------------------------------------------------------- 256 (426)
T 3c75_H 233 YMNCRDGSLARVDFADG-ETKVTNT------------------------------------------------------- 256 (426)
T ss_dssp EEEETTSSEEEEECCTT-CCEEEEC-------------------------------------------------------
T ss_pred EEEcCCCCEEEEECCCC-cEEEEee-------------------------------------------------------
Confidence 67777888887777433 1111000
Q ss_pred CCCCccccCCCCCccceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCce
Q 001343 725 MDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKA 804 (1096)
Q Consensus 725 d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~ 804 (1096)
.+++.. .......+.|++++..++.....+.+.+.|+......
T Consensus 257 --------------~~~~v~------------------~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~----- 299 (426)
T 3c75_H 257 --------------EVFHTE------------------DELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGAT----- 299 (426)
T ss_dssp --------------CCCSCT------------------TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEE-----
T ss_pred --------------eeeccC------------------CCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceE-----
Confidence 001110 0000001234555555555555666666665321100
Q ss_pred eeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec-----------CCeEEEEEcccceEEEeecCCCC
Q 001343 805 TASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-----------GGKISLFNMMTFKVMTTFMSPPP 873 (1096)
Q Consensus 805 ~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~-----------dg~v~iwd~~~~~~~~~~~~h~~ 873 (1096)
-+.-|.......+.... .......++++||++.++++. .+.|.+.|..+++.++++....
T Consensus 300 ----v~~~~~~~~~~~i~~g~----~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~- 370 (426)
T 3c75_H 300 ----FRAPIEALTEAERADDW----RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH- 370 (426)
T ss_dssp ----ECCCEESSCTTTGGGTE----EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-
T ss_pred ----Eeeeeeecccccccccc----ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-
Confidence 00111111111000000 112233478999987766653 2469999999999999885322
Q ss_pred CeeEEEEecCCCc-EEEEee-CCCeEEEEeeccce
Q 001343 874 ASTFLAFHPQDNN-IIAIGT-EDSTIHIYNVRVDE 906 (1096)
Q Consensus 874 ~i~~l~~s~~d~~-~l~s~~-~dg~i~iw~~~~~~ 906 (1096)
...+++|+| |++ ++++.. .++.|.++|+.+++
T Consensus 371 ~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 371 EIDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EECEEEECC-SSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CcCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCC
Confidence 578999999 888 888777 59999999999987
No 214
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.23 E-value=1.2e-09 Score=132.68 Aligned_cols=250 Identities=12% Similarity=0.058 Sum_probs=162.7
Q ss_pred CCCceEEEEEcCCCCcEEEEEeC----CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCC
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSS----NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~ 418 (1096)
|...+..++|||||++++.+.+. ...|+|||+.+|+.+.. . +.+ .....++|+ ||
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~~~--~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------LKD--VKFSGISWL-GN 185 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------EEE--EESCCCEEE-TT
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------cCC--ceeccEEEe-CC
Confidence 45578999999999954443333 35799999999986532 0 111 112467899 99
Q ss_pred CEEEEEECCC-------------eEEEEEccCCCccc-cceeecc-cccCEEEEEEecCCCcEEEEEEeC---CCcEEEE
Q 001343 419 NYVGVAFTKH-------------LIQLYSYAGSNDLR-QHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGD---DKLIKVW 480 (1096)
Q Consensus 419 ~~l~s~~~dg-------------~i~vwd~~~~~~~~-~~~~l~~-h~~~v~~l~~s~d~~~~~l~s~s~---d~~i~iw 480 (1096)
+.|+.++.+. .|++|++.++.... .+..... |...+..+.|+|||+. ++++.+. +..|++|
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~-l~~~~~~~~~~~~i~~~ 264 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRF-LLISAANSTSGNRLYVK 264 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCE-EEEEEESSSSCCEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCE-EEEEEccCCCCcEEEEE
Confidence 9999988774 39999998765321 1112233 5556889999999995 3333332 3589999
Q ss_pred E-cCCc-eEEEeeCCCCCeEEEEeeecCCCcEEEEEECC---CeEEEEEcCCCCe--eeEEeCCCCcEEEEEEcCCCCEE
Q 001343 481 E-LSGR-KLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADGSRL 553 (1096)
Q Consensus 481 d-~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~l 553 (1096)
| .++. ....+..+....... +.+. ++.+++....+ +.|..+++.+... ...+..+...+. .|+++++.|
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l 340 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL 340 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred ECCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence 9 4443 456666666666554 4343 23445555443 6799999987654 234555555554 889999998
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC----CeEEEEeCCCCeEE
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED----SQIKFWDMDNVNIL 620 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~ 620 (1096)
+..... ++...|++|++..+. .+.+.......+..+.+++++..++....+ +.++.||+.+++..
T Consensus 341 v~~~~~-~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 341 FAEYMV-DATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEEE-TTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEEE-CCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 877642 223479999988554 445543333356667777888777665544 78999999887643
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.23 E-value=5.8e-09 Score=112.17 Aligned_cols=229 Identities=11% Similarity=0.097 Sum_probs=155.6
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
+..-..+..|+|++..++++...++.|..||..+++... ......+.+++++++|++++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---------------------~~~~~~~~~i~~~~dG~l~v 69 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR---------------------VTMDAPVSSVALRQSGGYVA 69 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---------------------EECSSCEEEEEEBTTSSEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---------------------EeCCCceEEEEECCCCCEEE
Confidence 334567899999766688888888999999998876431 11345799999999999555
Q ss_pred EEECCCeEEEEEccCCCccccceeec--ccccCEEEEEEecCCCcEEEEEEeCC---------CcEEEEE--cCCceEEE
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNKLLCVVTCGDD---------KLIKVWE--LSGRKLFN 489 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~--~h~~~v~~l~~s~d~~~~~l~s~s~d---------~~i~iwd--~~~~~~~~ 489 (1096)
+ . ++.|.+||.++++... +.... .....+++++++|+|+ ++++...+ ..-.+|. ..++...
T Consensus 70 ~-~-~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~- 143 (297)
T 3g4e_A 70 T-I-GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKK- 143 (297)
T ss_dssp E-E-TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-
T ss_pred E-E-CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEE-
Confidence 4 4 5689999998765322 11111 1234588999999998 55544221 2334554 4454433
Q ss_pred eeCCCCCeEEEEeeecCCCcEE-EEEECCCeEEEEEcC--CCCee--e---EEeCCCCcEEEEEEcCCCCEEEEEeeccC
Q 001343 490 FEGHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYD--TMGSR--V---DYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1096)
Q Consensus 490 ~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~--~---~~~~~~~~i~~l~~s~~~~~l~~~~~~~~ 561 (1096)
+..+....+.++|++ +++.+ ++.+.++.|.+|+++ ++... . .+.........++++++|++.++...
T Consensus 144 ~~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~--- 218 (297)
T 3g4e_A 144 YFDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN--- 218 (297)
T ss_dssp EEEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET---
T ss_pred EeeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC---
Confidence 333344567889876 55555 555668899999984 33221 1 12222356789999999987776653
Q ss_pred CCCeEEEEeCCCCeeeEEEcCcCccceEEEEEe-CCCCEEEEEEc
Q 001343 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVGE 605 (1096)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~ 605 (1096)
.+.|..||..+++.+..+..+.. .+.+++|. |+++.|++++.
T Consensus 219 -~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 219 -GGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp -TTEEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEEB
T ss_pred -CCEEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEcC
Confidence 67899999999999998887654 68889998 88887776654
No 216
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.23 E-value=4.1e-10 Score=123.94 Aligned_cols=270 Identities=12% Similarity=0.013 Sum_probs=172.6
Q ss_pred CceEEEEEcCCCCcEEEEEe--CCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 345 STVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
..+..++++|+|+ ++++.. .++.++||.+.+++... +.-|. ....+|-..+..++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~~---~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLIP---FPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEEE---SCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCeec---CCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6899999999998 677753 23446777766554321 11010 01234667899999999988666
Q ss_pred EEEC-----CCeEEEEEccCCCccccceeec----ccccCEEEEEEecCCCcEEEEEEe---CCCcEEEEE-cCCceEEE
Q 001343 423 VAFT-----KHLIQLYSYAGSNDLRQHSQID----AHVGAVNDLAFAYPNKLLCVVTCG---DDKLIKVWE-LSGRKLFN 489 (1096)
Q Consensus 423 s~~~-----dg~i~vwd~~~~~~~~~~~~l~----~h~~~v~~l~~s~d~~~~~l~s~s---~d~~i~iwd-~~~~~~~~ 489 (1096)
+-.. ++.|.+||..+++.++.+ .+. .+...+..+++++++.. .+++.. .++.|.+|| .+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 5443 578999999988755432 121 23345789999987553 456655 688999999 77877766
Q ss_pred eeCCCCCeE-EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 490 FEGHEAPVY-SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 490 ~~~~~~~v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
+.+|..... ...+.+ +|..+.+.+.+|.++.|. ..+..++++|+|+.|+.+... ...++.
T Consensus 161 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVI--DGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCCEE--TTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred ecCCCcccccccceeE--CCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence 655432111 122222 456677777888876663 236789999999988887641 335655
Q ss_pred EeCC---CCe-----eeE--EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe
Q 001343 569 WNES---EGT-----IKR--TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1096)
Q Consensus 569 wd~~---~~~-----~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 638 (1096)
++.. .+. ... ...++.. ....++++++|+.+++...++.|.+||..+++........ ....+.+++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~ 299 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFG 299 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEEC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEEC
Confidence 5532 110 000 1112212 3345889999998888888999999998666654433322 22357899999
Q ss_pred CCCCEEEEEECCC
Q 001343 639 KEGNLLAVTTADN 651 (1096)
Q Consensus 639 ~~~~~l~~~~~dg 651 (1096)
+++.++++.+..+
T Consensus 300 ~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 300 SDGYLYFDCNQLH 312 (343)
T ss_dssp TTSCEEEEECCGG
T ss_pred CCCcEEEEeCccc
Confidence 9988877776543
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.21 E-value=3.9e-09 Score=118.55 Aligned_cols=238 Identities=9% Similarity=0.047 Sum_probs=161.8
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC--cEEEEE-cC
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWE-LS 483 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~--~i~iwd-~~ 483 (1096)
.....|+|+++++++++...++.|++||.+++..... ... ..... ++|+++++ .|+.+..++ .|.+|+ ..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~---~~~-~~~~~-ia~~~~g~--~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV---HPG-FKGGK-PAVTKDKQ--RVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEE---EET-CCBCB-CEECTTSS--EEEEEBSSTTCEEEEEEGGG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEe---ecc-CCCCc-eeEecCCC--cEEEEecCCCceEEEEEcCC
Confidence 4688999999999777777779999999987654331 222 22233 99999999 777777765 799999 55
Q ss_pred CceEEEe----eCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeE----EeCCCCcE--EEEEEcCCCCEE
Q 001343 484 GRKLFNF----EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD----YDAPGHWC--TTMLYSADGSRL 553 (1096)
Q Consensus 484 ~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~i--~~l~~s~~~~~l 553 (1096)
+.....+ ......+.++++++. + ..|+.+..++.|+.||..+...... .......- ..++|+|++..|
T Consensus 204 ~~~~~~~g~~~~~~~~~p~~iav~p~-~-g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 204 GWAPTRIGQLGSTFSGKIGAVALDET-E-EWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp TTCEEEEEECCTTSCSCCCBCEECTT-S-SEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred CceeEEeeeccchhcCCcEEEEEeCC-C-CeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence 5443443 224456778888663 3 3555577789999999987654332 22222222 389999965555
Q ss_pred EEEeeccCCCCeEEEEeCCCCeeeEEEcCcC--------------ccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCe
Q 001343 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFR--------------KKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN 618 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--------------~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 618 (1096)
+.+.. ..+.|+.|+.... +..+.++. -.....++++++|+++++-. .++.|+.|++.++.
T Consensus 282 yv~d~---~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 282 YMSDQ---NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp EEEET---TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred EEEeC---CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 55542 3788999987644 33333322 12367799999999777777 78999999987776
Q ss_pred EEEEeecCC------------CCCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 619 ILTSTDAEG------------GLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 619 ~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
......... .......+++++++.++++-..++.|+.+++
T Consensus 357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 544332200 1235788999999888888888888888765
No 218
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.20 E-value=1.2e-09 Score=132.61 Aligned_cols=244 Identities=11% Similarity=0.115 Sum_probs=159.8
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEE-----CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCC--
Q 001343 403 KDVPISVSRVAWSPDGNYVGVAF-----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-- 475 (1096)
Q Consensus 403 ~~h~~~V~~l~~spd~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~-- 475 (1096)
.+|...+..++|||||++||.+. .+..|++||+.+|+.+.. .+.+ .....++|+ |++ .|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~Ws-Dg~--~l~y~~~~~~~ 197 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISWL-GNE--GFFYSSYDKPD 197 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEEE-TTT--EEEEEESSCCC
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEEe-CCC--EEEEEEecCcc
Confidence 34666899999999999998543 225799999999875432 1111 113578999 999 677777664
Q ss_pred -----------cEEEEE-cCCc----eEEEeeC-CCCCeEEEEeeecCCCcEEEEEEC----CCeEEEEEcCCCC-eeeE
Q 001343 476 -----------LIKVWE-LSGR----KLFNFEG-HEAPVYSICPHHKENIQFIFSTAI----DGKIKAWLYDTMG-SRVD 533 (1096)
Q Consensus 476 -----------~i~iwd-~~~~----~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~~~~ 533 (1096)
.|++|+ -++. ++..... |.....++.+++ ||++|+.... +..|.++|+.+.. ....
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE--DDRFLLISAANSTSGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT--TSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC--CCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence 399999 4433 2333333 445567778765 6677654432 2589999988764 3445
Q ss_pred EeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee--eEEEcCcCccceEEEEEeCCCCEEEEEEc-CC--e
Q 001343 534 YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DS--Q 608 (1096)
Q Consensus 534 ~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~ 608 (1096)
+..+....... ++++|..++..+........|..+|+.++.. .+.+..+....+ .|+++++.|+.... ++ .
T Consensus 276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEE
T ss_pred EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeE
Confidence 55555544444 6777877776654322357899999988754 345555555333 78888988877664 43 6
Q ss_pred EEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECC----CcEEEEEcCCC
Q 001343 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD----NGFKILANAIG 661 (1096)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~ 661 (1096)
|++|++..+. ...+.... ...+..+.+++++..++....+ +.+..||+.++
T Consensus 352 l~~~d~~g~~-~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 352 VEQFDYEGKR-VREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEECTTSCE-EEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEEECCCCe-eEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 8999987554 44444322 2245667778888776666544 78999998776
No 219
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.19 E-value=4.9e-10 Score=122.19 Aligned_cols=183 Identities=14% Similarity=0.142 Sum_probs=134.0
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~ 425 (1096)
.+..+++++... ++++|+.+ .+.||++...+...... ...++......+.. |++|+| |+++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~---------~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSD---------STPLTFKWEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSS---------SCCCCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccc---------cccccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence 689999999998 78888877 55569986543110000 00011111234666 999999 99999999
Q ss_pred CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCeEEEEeee
Q 001343 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (1096)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~ 504 (1096)
.++.|++||+.+..... ....|...+.++.+.+. .+++++.||.+.+|| .++.... +...|++++|+|
T Consensus 104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred cCCcEEEEEchhhhccC---ccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 88999999998765333 45567888988887754 378889999999999 6666543 445799999987
Q ss_pred cCCCcEEEEEECCCeEEEEEcCCCCe--eeEE------e---CCCCcEEEEEEcCCCCEEEEEee
Q 001343 505 KENIQFIFSTAIDGKIKAWLYDTMGS--RVDY------D---APGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 505 ~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~------~---~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
+| ++.|..||++++|+.+.... ...+ . .+...|.++.|.+++.++++-..
T Consensus 173 --kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 173 --SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp --SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred --Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 44 78899999999998887664 3344 2 25678999999999999887554
No 220
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.19 E-value=1.2e-08 Score=109.71 Aligned_cols=228 Identities=10% Similarity=-0.008 Sum_probs=153.8
Q ss_pred CCCCEEEEEEcCCCC-EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c
Q 001343 405 VPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1096)
Q Consensus 405 h~~~V~~l~~spd~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~ 482 (1096)
+..--.+..|+|++. .+++...++.|..||..+++.. .+ .....+.+++++++|+ ++++. ++.|.+|| .
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~-~~~~~~~~i~~~~dG~--l~v~~--~~~l~~~d~~ 81 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ----RV-TMDAPVSSVALRQSGG--YVATI--GTKFCALNWK 81 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----EE-ECSSCEEEEEEBTTSS--EEEEE--TTEEEEEETT
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE----EE-eCCCceEEEEECCCCC--EEEEE--CCeEEEEECC
Confidence 444567899999655 5555566789999999886532 12 2456799999999998 55543 57899999 5
Q ss_pred CCceEEEeeC----CCCCeEEEEeeecCCCcEEEEEEC---------CCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCC
Q 001343 483 SGRKLFNFEG----HEAPVYSICPHHKENIQFIFSTAI---------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD 549 (1096)
Q Consensus 483 ~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~ 549 (1096)
+++....... ....++.+++.+ +|.++++... ...-.+|.++.................++|+|+
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~--dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDP--AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLD 159 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECT--TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTT
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECC--CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCC
Confidence 5554322221 123467788865 6666655432 133456665543333333333345788999999
Q ss_pred CCEEEEEeeccCCCCeEEEEeC--CCCeee--EEE---cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEE
Q 001343 550 GSRLFSCGTSKDGDSFLVEWNE--SEGTIK--RTY---AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS 622 (1096)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~--~~~~~~--~~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 622 (1096)
++.++.+.. ..+.|..|++ .++... +.+ ..... ....++++++|+..++....+.|..||..+++.+..
T Consensus 160 g~~lyv~~~---~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~-~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 160 HKIFYYIDS---LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQ-IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQT 235 (297)
T ss_dssp SCEEEEEEG---GGTEEEEEEECTTTCCEEEEEEEEECCGGGC-EEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEE
T ss_pred CCEEEEecC---CCCcEEEEeccCCCCcccCcEEEEECCCCCC-CCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEE
Confidence 998876543 2678999986 455432 222 22222 567799999998877777888999999999999988
Q ss_pred eecCCCCCCccEEEEe-CCCCEEEEEEC
Q 001343 623 TDAEGGLPNLPRLRFS-KEGNLLAVTTA 649 (1096)
Q Consensus 623 ~~~~~~~~~v~~~~~s-~~~~~l~~~~~ 649 (1096)
+..+.. .+++++|. |+++.|++++.
T Consensus 236 i~~p~~--~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 236 VKLPVD--KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EECSSS--BEEEEEEESGGGCEEEEEEB
T ss_pred EECCCC--CceEEEEeCCCCCEEEEEcC
Confidence 877643 78999998 88887776664
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.17 E-value=1.3e-08 Score=111.00 Aligned_cols=225 Identities=14% Similarity=0.036 Sum_probs=150.4
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~ 425 (1096)
-..+.+|+|++..+++++..++.|.+||..+++... + .....|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence 357789999876678888888999999998765421 1 123579999999999887754
Q ss_pred CCCeEEEEEccCCCccccceeec-c-cccCEEEEEEecCCCcEEEEEEeC------CCcEEEEEcCCceEEEeeCCCCCe
Q 001343 426 TKHLIQLYSYAGSNDLRQHSQID-A-HVGAVNDLAFAYPNKLLCVVTCGD------DKLIKVWELSGRKLFNFEGHEAPV 497 (1096)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~l~-~-h~~~v~~l~~s~d~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~~~~v 497 (1096)
. ..|.+||..+++... +.... + ....+.+++++|+|+ ++++... .+.|..++ +++. ..+..+....
T Consensus 108 ~-~gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~-~g~~-~~~~~~~~~~ 181 (326)
T 2ghs_A 108 D-DGLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA-KGKV-TKLFADISIP 181 (326)
T ss_dssp T-TEEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE-TTEE-EEEEEEESSE
T ss_pred C-CCEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe-CCcE-EEeeCCCccc
Confidence 4 459999998876432 11111 1 124689999999998 5554432 24555555 5443 3333333456
Q ss_pred EEEEeeecCCCcEEEE-EECCCeEEEEEcC--CC-Ce--ee---EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 498 YSICPHHKENIQFIFS-TAIDGKIKAWLYD--TM-GS--RV---DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s-~~~dg~i~iwd~~--~~-~~--~~---~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
..++|++ +++.++. .+.++.|.+|+++ ++ .. .. .+......+..+++.++|++.++... .+.|..
T Consensus 182 ~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~~ 255 (326)
T 2ghs_A 182 NSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDR 255 (326)
T ss_dssp EEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEE
T ss_pred CCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEEE
Confidence 7888866 5665544 4557899999986 43 21 11 12223346788999999987776543 678999
Q ss_pred EeCCCCeeeEEEcCcCccceEEEEEe-CCCCEEEEEEcC
Q 001343 569 WNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVGED 606 (1096)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d 606 (1096)
||. +++.+..+..+.. .+.+++|+ ++++.|++++..
T Consensus 256 ~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 256 YDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEEBC
T ss_pred ECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEecC
Confidence 998 6777777766544 68889998 888877666543
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.17 E-value=5e-09 Score=113.17 Aligned_cols=233 Identities=11% Similarity=0.041 Sum_probs=155.8
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~ 422 (1096)
+.......+|+|+|+.+++++..++.|..|+. +++... +..+...+..++++++|++++
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG~l~v 101 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQRLVH 101 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTSCEEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCCCEEE
Confidence 45567899999999877888888999999997 454221 333566799999999999776
Q ss_pred EEECCCeEEEEEccCCCccccceeeccc-ccCEEEEEEecCCCcEEEEE----EeC-------------CCcEEEEE-cC
Q 001343 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVT----CGD-------------DKLIKVWE-LS 483 (1096)
Q Consensus 423 s~~~dg~i~vwd~~~~~~~~~~~~l~~h-~~~v~~l~~s~d~~~~~l~s----~s~-------------d~~i~iwd-~~ 483 (1096)
+...++.|.+|+.+ ++.........+. ...+.++++.++|+ +.++ |.. .+.|..|| .+
T Consensus 102 ~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 102 CEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp EETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred EECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 65566889999986 4422111011111 23467899999998 6665 332 25677788 45
Q ss_pred CceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC------CeEEEEEcCCCCee--eEE-eCCCCcEEEEEEcCCCCEEE
Q 001343 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSR--VDY-DAPGHWCTTMLYSADGSRLF 554 (1096)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~--~~~-~~~~~~i~~l~~s~~~~~l~ 554 (1096)
++..... .......++|++ ++..|+.+... +.|.+|++...... ..+ .........+++.++|+..+
T Consensus 179 g~~~~~~--~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv 254 (305)
T 3dr2_A 179 SPLQRMA--DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS 254 (305)
T ss_dssp CCCEEEE--EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE
T ss_pred CcEEEEe--cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE
Confidence 6554333 344567888866 66777777665 78999998754311 111 12233456789999999544
Q ss_pred EEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEe
Q 001343 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (1096)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 613 (1096)
+. .+.|.+|+. +++.+..+.... .+..++|+++++.|+.++.++ ++.++
T Consensus 255 ~~------~~gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 255 SS------GTGVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp CC------SSEEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred ec------CCcEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 43 235999998 577777776554 366788999998888888754 44443
No 223
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.12 E-value=4.9e-05 Score=89.56 Aligned_cols=527 Identities=10% Similarity=-0.028 Sum_probs=279.8
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeC-CCCCeE
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG-HEAPVY 498 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~ 498 (1096)
+|+.+ ..+.|+..++++...... ..+ ..-..+..++|.+.+.. ++++-..++.|..++.+|.....+.. ......
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~-~~~-~~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVA-IPL-TGVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEE-CCC-CSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcceE-EEc-CCCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44444 456899999986543221 112 22356889999997764 55566678899999855544333322 223466
Q ss_pred EEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeE
Q 001343 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1096)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1096)
.+++.+. .+++.++-...+.|.+.+++.................+++.|....|+.... .....|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~--g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW--GGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC--CCCCEEEEEeCCCCceEE
Confidence 7887653 3355566666789999998755443333344456889999997666766542 125678888876554333
Q ss_pred EEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEE
Q 001343 579 TYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1096)
Q Consensus 579 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 657 (1096)
.+.. ......+++++++..|+.+. ..+.|..++++.... ..+... ......+++.. +.++++-...+.|...|
T Consensus 161 l~~~--~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 161 LVPN--VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EECS--CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EECC--CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 3332 22567799999877777665 567899999876544 233322 12456788765 44555555578888888
Q ss_pred cCCCccccccccCCCcccccCcceeE-EeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCC
Q 001343 658 NAIGLRSLRAVENPPFEALRTPIESV-ALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD 736 (1096)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg 736 (1096)
..++.. ...+..... .+..+ .+++.-+. ...+|..-.+. + .
T Consensus 235 k~tg~~-~~~l~~~~~-----~p~~i~v~~~~~q~----------------~~n~C~~~ng~--------------C--~ 276 (628)
T 4a0p_A 235 KTSGQN-RTIIQGHLD-----YVMDILVFHSSRQS----------------GWNECASSNGH--------------C--S 276 (628)
T ss_dssp TTTCCS-CEEEECSCC-----SCCEEEEECGGGSC----------------CCCTTTTTGGG--------------C--S
T ss_pred CCCCCc-eEEEecCCC-----Ccceeeeeeecccc----------------cceEeccCCCC--------------c--c
Confidence 777632 222221110 01122 12211100 00001000000 0 0
Q ss_pred CccceeeeeeecCCceEEEEcC-CCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCcccccc
Q 001343 737 KPKPWQLAEIVDSGQCRLVTMP-ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLP 815 (1096)
Q Consensus 737 ~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~ 815 (1096)
.+.+-. +..-.....+ |........+|.. + ...++.+. ...|+-..++...
T Consensus 277 ~~C~~~------~~~~~~C~C~~g~~l~~d~~~C~~--~-~~~Ll~s~-~~~i~~i~l~~~~------------------ 328 (628)
T 4a0p_A 277 HLCLAV------PVGGFVCGCPAHYSLNADNRTCSA--P-TTFLLFSQ-KSAINRMVIDEQQ------------------ 328 (628)
T ss_dssp SEEEEE------TTTEEEEECSTTCEECTTSSCEEC--C-SSEEEEEE-TTEEEEECCCTTC------------------
T ss_pred hhhhcC------CCCCeeEEcCCCcEecccCCcCcc--c-cceeeeec-cceEEEEeccccc------------------
Confidence 000000 0000000110 0000111112221 1 22333332 3344433332100
Q ss_pred CccccccccccCCCcCCCeeeeeecCCCcEEEEec--CCeEEEEEcccceEEEeecC------CCCCeeEEEEecCCCcE
Q 001343 816 SSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMS------PPPASTFLAFHPQDNNI 887 (1096)
Q Consensus 816 ~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~--dg~v~iwd~~~~~~~~~~~~------h~~~i~~l~~s~~d~~~ 887 (1096)
... ...... .-..+.+++|.+.+..|..+. .+.|+.+++........+.. ....+..+++....+++
T Consensus 329 -~~~-~~l~~~---~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nL 403 (628)
T 4a0p_A 329 -SPD-IILPIH---SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYI 403 (628)
T ss_dssp -CCC-EECCCT---TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEE
T ss_pred -Cce-EEEEeh---hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeE
Confidence 000 000111 234577899998777777666 47899998754332223322 23467899998833445
Q ss_pred EEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEec-CCcEEEE-Eecc--eEEEEEcccce
Q 001343 888 IAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA-DQVRMLV-VHET--QLAIYDASKME 963 (1096)
Q Consensus 888 l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~-dg~~l~~-~~d~--~i~iwd~~~~~ 963 (1096)
.++-+..+.|.+.++.... . +.+. .... .....+++.| .|....+ .... .|...+.+ |.
T Consensus 404 Y~td~~~~~I~v~~~~G~~-~------------~~l~--~~~l-~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~ 466 (628)
T 4a0p_A 404 YWTCEATNVINVTRLDGRS-V------------GVVL--KGEQ-DRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GT 466 (628)
T ss_dssp EEEETTTTEEEEEETTSCE-E------------EEEE--ECTT-CCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SC
T ss_pred EEEcCCCCEEEEEECCCCe-E------------EEEE--eCCC-CceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CC
Confidence 5566677888888876432 0 0111 1111 2578999999 5666666 3333 56666665 33
Q ss_pred eccccccCCCCCCCceEEEEeeCCcEEEEEe-cCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCC
Q 001343 964 RIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEP 1042 (1096)
Q Consensus 964 ~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~ 1042 (1096)
....+.... -.....++++++++.|..+. ..+.|...+++... +..+... ... .|..|+.. .+
T Consensus 467 ~~~~l~~~~--l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~~~---------~~~--~P~glav~--~~ 530 (628)
T 4a0p_A 467 EREVLFFSG--LSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLEDS---------NIL--QPVGLTVF--EN 530 (628)
T ss_dssp SCEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECS---------SCS--CEEEEEEE--TT
T ss_pred CcEEEEecc--CCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEEcC---------CCC--CcEEEEEE--CC
Confidence 333333322 45578999999877666554 45789999986543 3333211 111 12246664 35
Q ss_pred ceEEEEeeCCcEEEEccCCCC
Q 001343 1043 NQFAIGLTDGSVKVMEPSESE 1063 (1096)
Q Consensus 1043 ~~l~s~~~dg~i~vW~v~~~~ 1063 (1096)
.++.+=...+.|...+..+|+
T Consensus 531 ~ly~tD~~~~~i~~~~k~~G~ 551 (628)
T 4a0p_A 531 WLYWIDKQQQMIEKIDMTGRE 551 (628)
T ss_dssp EEEEEETTTTEEEEEETTSSS
T ss_pred EEEEEECCCCeEEEEECcCCC
Confidence 666665566788888887776
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.11 E-value=6.1e-08 Score=105.58 Aligned_cols=223 Identities=13% Similarity=0.036 Sum_probs=145.2
Q ss_pred CEEEEEEcCCCC-EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc
Q 001343 408 SVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1096)
Q Consensus 408 ~V~~l~~spd~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~ 485 (1096)
-..+.+|+|++. .+++...++.|..||..+++... + .....+.+++|+++|+ ++++. . ..|.+|| .+++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~----~-~~~~~v~~i~~~~dg~--l~v~~-~-~gl~~~d~~~g~ 120 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV----H-ALPFMGSALAKISDSK--QLIAS-D-DGLFLRDTATGV 120 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE----E-ECSSCEEEEEEEETTE--EEEEE-T-TEEEEEETTTCC
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE----E-ECCCcceEEEEeCCCe--EEEEE-C-CCEEEEECCCCc
Confidence 356789999855 55556667899999998764321 2 2346799999999998 55544 3 4599999 5666
Q ss_pred eEEEeeCC-----CCCeEEEEeeecCCCcEEEEEECC----CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEE
Q 001343 486 KLFNFEGH-----EAPVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1096)
Q Consensus 486 ~~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 556 (1096)
.. .+... ...+.++++.+ +|.++++...+ +...+|.+++ .....+.........++|+|+++.++.+
T Consensus 121 ~~-~~~~~~~~~~~~~~~~i~~d~--~G~l~v~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~~~~i~~s~dg~~lyv~ 196 (326)
T 2ghs_A 121 LT-LHAELESDLPGNRSNDGRMHP--SGALWIGTMGRKAETGAGSIYHVAK-GKVTKLFADISIPNSICFSPDGTTGYFV 196 (326)
T ss_dssp EE-EEECSSTTCTTEEEEEEEECT--TSCEEEEEEETTCCTTCEEEEEEET-TEEEEEEEEESSEEEEEECTTSCEEEEE
T ss_pred EE-EEeeCCCCCCCCCCCCEEECC--CCCEEEEeCCCcCCCCceEEEEEeC-CcEEEeeCCCcccCCeEEcCCCCEEEEE
Confidence 43 33221 23477888866 56665554321 2234444443 3333332223356789999999988765
Q ss_pred eeccCCCCeEEEEeCC--CC-ee-----eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCC
Q 001343 557 GTSKDGDSFLVEWNES--EG-TI-----KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (1096)
Q Consensus 557 ~~~~~~~~~i~iwd~~--~~-~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 628 (1096)
.. ..+.|.+|+.. ++ .. ...+..... ....++++++|++.++...++.|.+|+. +++.+..+.....
T Consensus 197 ~~---~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~-~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~ 271 (326)
T 2ghs_A 197 DT---KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG-GMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK 271 (326)
T ss_dssp ET---TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSS-EEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS
T ss_pred EC---CCCEEEEEEcccccCCcccCceEEEECCCCCC-CCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCC
Confidence 43 26789999985 55 32 222222222 5667899999987777767789999998 5777777765543
Q ss_pred CCCccEEEEe-CCCCEEEEEECC
Q 001343 629 LPNLPRLRFS-KEGNLLAVTTAD 650 (1096)
Q Consensus 629 ~~~v~~~~~s-~~~~~l~~~~~d 650 (1096)
.+.+++|+ +++..|++++..
T Consensus 272 --~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 272 --QTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp --BEEEEEEESTTSCEEEEEEBC
T ss_pred --CcEEEEEecCCCCEEEEEecC
Confidence 68999998 888777666543
No 225
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.11 E-value=1.2e-08 Score=110.18 Aligned_cols=236 Identities=11% Similarity=0.056 Sum_probs=153.6
Q ss_pred cccCCCCEEEEEEcCCCC-EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEE
Q 001343 402 FKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1096)
Q Consensus 402 ~~~h~~~V~~l~~spd~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iw 480 (1096)
+...........|+|+|+ .++++..++.|..|+.. ++ .. .+..+...+..++++++|+ ++++...++.|.+|
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRS 112 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEE
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEE
Confidence 334555778899999999 55566677899999884 43 22 3445667899999999998 66665566889999
Q ss_pred EcCCceEEEeeCC----CCCeEEEEeeecCCCcEEEE----EEC-------------CCeEEEEEcCCCCeeeEEeCCCC
Q 001343 481 ELSGRKLFNFEGH----EAPVYSICPHHKENIQFIFS----TAI-------------DGKIKAWLYDTMGSRVDYDAPGH 539 (1096)
Q Consensus 481 d~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~ 539 (1096)
+.+++........ ...+..+++.+ +|.++++ |.. .+.|..||..+++..... ...
T Consensus 113 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~--dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~ 188 (305)
T 3dr2_A 113 DADGQAHLLVGRYAGKRLNSPNDLIVAR--DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD 188 (305)
T ss_dssp CTTSCEEEEECEETTEECSCCCCEEECT--TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred CCCCCEEEEEeccCCCccCCCCCEEECC--CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence 9556543222111 12356788755 6677775 332 245666666555443332 334
Q ss_pred cEEEEEEcCCCCEEEEEeecc--CCCCeEEEEeCCCCeee--EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCC
Q 001343 540 WCTTMLYSADGSRLFSCGTSK--DGDSFLVEWNESEGTIK--RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~~~--~~~~~i~iwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1096)
....++|+||++.|+.+.... .+.+.|+.|++..+... ..+..........++++++|+. .+++.+ .|.+|+.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~- 265 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS- 265 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSS-EEEEECT-
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCC-cEEEECC-
Confidence 578899999999888775410 01268999998765411 1221111113445889999984 444444 5999998
Q ss_pred CCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEE
Q 001343 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1096)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1096)
.++.+..+.... .+..++|+++++.|++++.++..+
T Consensus 266 ~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 266 DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 567777776543 478999999999888888764333
No 226
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.10 E-value=2.5e-05 Score=91.99 Aligned_cols=525 Identities=8% Similarity=-0.022 Sum_probs=267.3
Q ss_pred CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCce--EEEeeCCCCCeEEEEee
Q 001343 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK--LFNFEGHEAPVYSICPH 503 (1096)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~ 503 (1096)
....|+..++........ .+...-..+..++|++.+.. ++++-...+.|..++.+|.. ...+...-.....+++.
T Consensus 16 ~~~~I~~i~~~~~~~~~~--~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD 92 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT--IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 92 (619)
T ss_dssp CSSBEEEECCC-----------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEE
T ss_pred ccccEEEEeCCCCcceEE--EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEE
Confidence 346788888876421111 12233456889999997774 44455556788888855542 22333333467888886
Q ss_pred ecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc
Q 001343 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1096)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 583 (1096)
+. ++.+.++-...+.|.+.+++.................+++.|.+..|+.+... ....|...++...........
T Consensus 93 ~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~~~l~~~- 168 (619)
T 3s94_A 93 WL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINS- 168 (619)
T ss_dssp TT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEEEECS-
T ss_pred ec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCceEEEEeC-
Confidence 53 23455566677899999987655444443444567789999987777665421 145677777654333222222
Q ss_pred CccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCc
Q 001343 584 RKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1096)
Q Consensus 584 ~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 662 (1096)
.-.....+++++++..|+.+. ..+.|..++++........... ......+++..+ .++++-...+.|...|..++.
T Consensus 169 ~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 169 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence 222567799999877776665 5678999998765444333311 123467888665 444454567789999987773
Q ss_pred cccccccCCCcccccCcceeEE-eecCCCeEEecCCCCceeEeccCCCcCCCcccCCCC---ccCCCCCCccccCCCCCc
Q 001343 663 RSLRAVENPPFEALRTPIESVA-LKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP---TSRSMDKPRTVDDVTDKP 738 (1096)
Q Consensus 663 ~~~~~~~~~~~~~~~~~v~~~~-~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~---~~s~d~~~l~s~~~dg~i 738 (1096)
. ...+..... .+..+. +++..+-.. ..+|....+... ..++........+.+|..
T Consensus 246 ~-~~~i~~~~~-----~p~~i~v~~~~~qp~~---------------~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~ 304 (619)
T 3s94_A 246 G-LREIHSDIF-----SPMDIHAFSQQRQPNA---------------TNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVK 304 (619)
T ss_dssp C-CEECCSCCC-----CCSEEEECCGGGSCCC---------------CCTTTTTGGGCSSEEEECSSTTSEEEECCTTCC
T ss_pred c-cEEEecCCC-----CCcEEEEEccccCCCc---------------cccccCCCCcccceEECCCCCCCceEeCCchhe
Confidence 2 222221110 111222 222111000 000111000000 000100000000000000
Q ss_pred cceeeeeeecCCceEEEEcCCCCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCcc
Q 001343 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 818 (1096)
Q Consensus 739 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~ 818 (1096)
. .....+|.. .... ++..+..+.|+..+++....
T Consensus 305 l-----------------------~~d~~~C~~--~~~~-~Ll~~~~~~i~~i~l~~~~~-------------------- 338 (619)
T 3s94_A 305 L-----------------------LENGKTCKD--GATE-LLLLARRTDLRRISLDTPDF-------------------- 338 (619)
T ss_dssp B-----------------------CTTSSCBCS--SCSE-EEEEEESSCEEEEESSSTTC--------------------
T ss_pred e-----------------------cccCcccCC--CCce-EEEEEcccceEEEecCCCcc--------------------
Confidence 0 000001100 1112 22333344555555432111
Q ss_pred ccccccccCCCcCCCeeeeeecCCCcEEEEec--CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCe
Q 001343 819 LLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDST 896 (1096)
Q Consensus 819 ~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~--dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~ 896 (1096)
..+...+. .-..+.+++|.+.+..|..++ .+.|+.+++........+.........+++.+.++++.++-+..+.
T Consensus 339 ~~~~~~~~---~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~ 415 (619)
T 3s94_A 339 TDIVLQLE---DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDR 415 (619)
T ss_dssp CCEECCCS---CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTE
T ss_pred ceeEEecc---ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCc
Confidence 00010111 123467899998665665555 5889999986543333333334567789998634555556566788
Q ss_pred EEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecC-CcEEEEE--ecceEEEEEcccceeccccccCCC
Q 001343 897 IHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD-QVRMLVV--HETQLAIYDASKMERIRQWTPQDA 973 (1096)
Q Consensus 897 i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~d-g~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~ 973 (1096)
|.+.++.... .+.+. ...- .....+++.|. |.+..+. ....|...+.+ |.....+....
T Consensus 416 I~v~~~~G~~-------------~~~l~--~~~l-~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~- 477 (619)
T 3s94_A 416 IEVTRLNGTM-------------RKILI--SEDL-EEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLVNTS- 477 (619)
T ss_dssp EEEEETTSCS-------------CEEEE--CTTC-CSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSS-
T ss_pred EEEEeCCCCe-------------EEEEE--ECCC-CCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEEEeCC-
Confidence 8888877543 01111 1111 25688999997 5544442 23567766665 33223332222
Q ss_pred CCCCceEEEEeeCCcEEEEEe-cCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCC
Q 001343 974 LSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG 1052 (1096)
Q Consensus 974 ~~~~i~~l~~s~dg~~la~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg 1052 (1096)
-.....++++++++.|..+. ..+.|..++++...........- . | .. .|+... +.++++=...+
T Consensus 478 -l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l----~---~---P~--glav~~--~~ly~tD~~~~ 542 (619)
T 3s94_A 478 -LGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKI----P---H---IF--GFTLLG--DYVYWTDWQRR 542 (619)
T ss_dssp -CSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCC----C---S---SC--CEEEET--TEEEEECTTSS
T ss_pred -CCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCC----C---C---cE--EEEEEC--CEEEEeecCCC
Confidence 45678899998766666554 45679999987544333222111 0 1 12 355543 45555555567
Q ss_pred cEEEEccCCCC
Q 001343 1053 SVKVMEPSESE 1063 (1096)
Q Consensus 1053 ~i~vW~v~~~~ 1063 (1096)
.|..-+..+|.
T Consensus 543 ~I~~~~k~~g~ 553 (619)
T 3s94_A 543 SIERVHKRSAE 553 (619)
T ss_dssp CEEEEESSSCC
T ss_pred eEEEEEcCCCc
Confidence 78888877774
No 227
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.08 E-value=2.6e-09 Score=116.54 Aligned_cols=174 Identities=13% Similarity=0.033 Sum_probs=131.0
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCc--------cccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEE
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND--------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~--------~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~i 479 (1096)
.++.+++++...++++|+.+ .+++|+++.... .... ....+.+ |+.++| |+. +|+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGD--QVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETT--EEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCC--EEEEE-cCCcEEE
Confidence 68999999999999999987 566698764321 1111 1234666 999999 777 77777 8899999
Q ss_pred EE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEee
Q 001343 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
|| .+.........|..++.++.+.+ . .+++++.||.|.+||+....... ....|++++|||+| ++.+..
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~--p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~ 180 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVN--N--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLK 180 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECS--S--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEET
T ss_pred EEchhhhccCccceeecceeeEEecC--C--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEc
Confidence 99 65555566677888888877643 2 38889999999999998776543 23479999999999 455554
Q ss_pred ccCCCCeEEEEeCCCCee--eEEE------c---CcCccceEEEEEeCCCCEEEEEE
Q 001343 559 SKDGDSFLVEWNESEGTI--KRTY------A---GFRKKSNGVVQFDTTQNHFLAVG 604 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~--~~~~------~---~~~~~~i~~~~~~~~~~~l~~~~ 604 (1096)
++.+++|+...+.. .+++ . +|. ..+.++.|.+++.++++-+
T Consensus 181 ----dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~-~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 181 ----DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE-YSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp ----TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT-SEEEEEEESSSSEEEEEEE
T ss_pred ----CCcEEEEcCCCccccccceecCCcccccccCCC-eeEEEEEEecCCeEEEEEc
Confidence 89999999888776 6666 2 233 4788899999888777643
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.06 E-value=2.3e-08 Score=120.13 Aligned_cols=308 Identities=12% Similarity=0.053 Sum_probs=188.5
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC-CCE-EEEEEcCCCCEEEEEECCCeEEEEEcc
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISV-SRVAWSPDGNYVGVAFTKHLIQLYSYA 436 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V-~~l~~spd~~~l~s~~~dg~i~vwd~~ 436 (1096)
.+++++.++.|.-+|..+|+.+-+..... . ........ ..+ ..++. ++..|++++.|+.|..+|..
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~-------~---~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~ 139 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYDPQS-------D---RHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAK 139 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEECCCC-------C---GGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETT
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEcCCC-------C---ccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECC
Confidence 36667788999999999999875422110 0 00000000 000 01112 35688889999999999999
Q ss_pred CCCccccceeecccc---cCEEEEEEecCCCcEEEEEEe-----CCCcEEEEE-cCCceEEEeeCCC-C-----------
Q 001343 437 GSNDLRQHSQIDAHV---GAVNDLAFAYPNKLLCVVTCG-----DDKLIKVWE-LSGRKLFNFEGHE-A----------- 495 (1096)
Q Consensus 437 ~~~~~~~~~~l~~h~---~~v~~l~~s~d~~~~~l~s~s-----~d~~i~iwd-~~~~~~~~~~~~~-~----------- 495 (1096)
+|+.+-..... .+. ..+.+.-...++. +++..+ .++.|+.|| .+|+.+..+.... .
T Consensus 140 TG~~~W~~~~~-~~~~~~~~~~~sP~v~~g~--v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~ 216 (689)
T 1yiq_A 140 TGQRAWSVDTR-ADHKRSYTITGAPRVVNGK--VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGME 216 (689)
T ss_dssp TCCEEEEEECC-SCTTSCCBCCSCCEEETTE--EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHH
T ss_pred CCCEeeeecCc-CCCCCCccccCCcEEECCE--EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccc
Confidence 99876533211 011 1111100111443 333322 378999999 8999987765210 0
Q ss_pred ------------------Ce-EEEEeeecCCCcEEEEEECCCe-------------------EEEEEcCCCCeeeEEeCC
Q 001343 496 ------------------PV-YSICPHHKENIQFIFSTAIDGK-------------------IKAWLYDTMGSRVDYDAP 537 (1096)
Q Consensus 496 ------------------~v-~~~~~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~ 537 (1096)
.+ ..+++.+ +...++.++.++. |..||.++++.+..+...
T Consensus 217 ~~~~~~~g~~w~~~~~g~~~w~~~~~d~--~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~ 294 (689)
T 1yiq_A 217 IAAKTWFGDAYVEQGGGGTAWDSFAYDP--ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT 294 (689)
T ss_dssp HHHTTCCSSTHHHHCEECCCCSCEEEET--TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS
T ss_pred ccccccCCceeeecCCCCccccceeEcC--CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecC
Confidence 01 1345544 4568888887764 999999999998877653
Q ss_pred CC---------cEEEEEEcCCCC---EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc--------------------
Q 001343 538 GH---------WCTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-------------------- 585 (1096)
Q Consensus 538 ~~---------~i~~l~~s~~~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-------------------- 585 (1096)
.+ .........+|+ .++.+.. ++.++++|..+|+.+........
T Consensus 295 ~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~----~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~ 370 (689)
T 1yiq_A 295 PGDAWDYTATQHMILAELPIDGKPRKVLMQAPK----NGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENA 370 (689)
T ss_dssp TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCT----TSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHH
T ss_pred CcccccccCCCCcEEEeeccCCcEEEEEEEECC----CCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhc
Confidence 21 122222223554 5666654 89999999999998744321110
Q ss_pred ------------------cceEEEEEeCCCCEEEEEEc------------------------------------------
Q 001343 586 ------------------KSNGVVQFDTTQNHFLAVGE------------------------------------------ 605 (1096)
Q Consensus 586 ------------------~~i~~~~~~~~~~~l~~~~~------------------------------------------ 605 (1096)
.....++++|+...+++...
T Consensus 371 ~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~ 450 (689)
T 1yiq_A 371 AYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMA 450 (689)
T ss_dssp CTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHH
T ss_pred cccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCC
Confidence 00112678888888777532
Q ss_pred ---CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCccee
Q 001343 606 ---DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIES 682 (1096)
Q Consensus 606 ---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 682 (1096)
+|.|+.||+.+++.+.....+.. +..-.+...+.++++++.||.++.||..++ +.+-.+...... ...-
T Consensus 451 ~~~~g~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagglvf~gt~dg~l~a~D~~tG-~~lw~~~~~~~~----~~~p 522 (689)
T 1yiq_A 451 KSWSGKLIAWDPVKQQAAWEVPYVTI---FNGGTLSTAGNLVFEGSADGRVIAYAADTG-EKLWEQPAASGV----MAAP 522 (689)
T ss_dssp TTCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCC----CSCC
T ss_pred CCcceeEEEEECCCCCeEeEccCCCC---ccCccceECCCEEEEECCCCcEEEEECCCC-ccceeeeCCCCc----ccCc
Confidence 37899999999999988876542 334466678889999999999999999999 444444332111 1223
Q ss_pred EEeecCCCeEEec
Q 001343 683 VALKVSASSAVSS 695 (1096)
Q Consensus 683 ~~~s~~g~~lv~~ 695 (1096)
+.+..+|+..|+.
T Consensus 523 ~ty~~~G~qyv~~ 535 (689)
T 1yiq_A 523 VTYSVDGEQYVTF 535 (689)
T ss_dssp EEEEETTEEEEEE
T ss_pred eEEEECCEEEEEE
Confidence 6678888766443
No 229
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.06 E-value=0.0001 Score=86.70 Aligned_cols=523 Identities=7% Similarity=-0.028 Sum_probs=264.1
Q ss_pred CCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC-CCeEEEEEccCCCcccc
Q 001343 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT-KHLIQLYSYAGSNDLRQ 443 (1096)
Q Consensus 365 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~-dg~i~vwd~~~~~~~~~ 443 (1096)
....|+..++........ .+...-..+..|+|++.+..|..+.. .+.|..+++++......
T Consensus 16 ~~~~I~~i~~~~~~~~~~------------------~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~ 77 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT------------------IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN 77 (619)
T ss_dssp CSSBEEEECCC---------------------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE
T ss_pred ccccEEEEeCCCCcceEE------------------EEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE
Confidence 567888888875421110 02223446789999997777766654 57899999876532121
Q ss_pred ceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEee-CCCCCeEEEEeeecCCCcEEEEEEC--CCeE
Q 001343 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAI--DGKI 520 (1096)
Q Consensus 444 ~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~--dg~i 520 (1096)
.+..--.....+++.+.+.. +.++-...+.|.+.+.+|.....+. ..-.....+++.|.. | .|+.... .+.|
T Consensus 78 --v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~-g-~ly~tD~g~~~~I 152 (619)
T 3s94_A 78 --VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS-G-FMYWTDWGEVPKI 152 (619)
T ss_dssp --EECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTT-T-EEEEEECSSSCEE
T ss_pred --EEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCC-C-eEEEeccCCCCEE
Confidence 22223357899999997664 5556667789999997776554443 334456788887642 3 4444442 4667
Q ss_pred EEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEE
Q 001343 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1096)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 600 (1096)
...+++.................+++++++..|+.+.. ..+.|...|+..........+... ....+++..+ .+
T Consensus 153 ~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~---~~~~I~~~~~dG~~~~~~~~~~~~-~P~gi~~~~~--~l 226 (619)
T 3s94_A 153 ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFED--IL 226 (619)
T ss_dssp EEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEET---TTCCEEEESSSCCEEC----------CCCEEESSS--EE
T ss_pred EEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeC---CCCeEEEecCCCCccEEEEeCCCC-CceEEEEeCC--EE
Confidence 76676644443333344557899999998888887643 367898888875444333322211 2234555443 44
Q ss_pred EEE-EcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe-CCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccC
Q 001343 601 LAV-GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS-KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (1096)
Q Consensus 601 ~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 678 (1096)
+.+ ...+.|...|..+++....+..... ....+.+. |..+-. + .. .+. ...+
T Consensus 227 y~td~~~~~V~~~d~~tg~~~~~i~~~~~--~p~~i~v~~~~~qp~--~------------~n-~C~---------~~ng 280 (619)
T 3s94_A 227 YWTDWSTHSILACNKYTGEGLREIHSDIF--SPMDIHAFSQQRQPN--A------------TN-PCG---------IDNG 280 (619)
T ss_dssp EEECTTTCSEEEEESSSCCCCEECCSCCC--CCSEEEECCGGGSCC--C------------CC-TTT---------TTGG
T ss_pred EEecCCCCEEEEEECCCCcccEEEecCCC--CCcEEEEEccccCCC--c------------cc-ccc---------CCCC
Confidence 444 3567888888877766555443221 23333332 110000 0 00 000 0011
Q ss_pred cceeEEe-ecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEc
Q 001343 679 PIESVAL-KVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM 757 (1096)
Q Consensus 679 ~v~~~~~-s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 757 (1096)
.+..+++ +|.+....+....+.. .......+......+|+.+. .+.|+..++.. .....+.+
T Consensus 281 ~Cs~lCl~~~~~~~~~C~C~~g~~------------l~~d~~~C~~~~~~~Ll~~~-~~~i~~i~l~~----~~~~~~~~ 343 (619)
T 3s94_A 281 GCSHLCLMSPVKPFYQCACPTGVK------------LLENGKTCKDGATELLLLAR-RTDLRRISLDT----PDFTDIVL 343 (619)
T ss_dssp GCSSEEEECSSTTSEEEECCTTCC------------BCTTSSCBCSSCSEEEEEEE-SSCEEEEESSS----TTCCCEEC
T ss_pred cccceEECCCCCCCceEeCCchhe------------ecccCcccCCCCceEEEEEc-ccceEEEecCC----CccceeEE
Confidence 1222222 1211101111111000 00000000011111222222 24555555542 11111122
Q ss_pred CCCCCCcccEEEEEEecCCceEEEee-cCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeee
Q 001343 758 PESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 836 (1096)
Q Consensus 758 ~~~~~~~~~i~~l~~s~~~~~l~~~~-~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~ 836 (1096)
+- ..-..+..++|.+.+..|+.+. ..+.|+.++++.... .. .+.. .-.....
T Consensus 344 ~~--~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~----------------------~~-v~~~--~~~~p~G 396 (619)
T 3s94_A 344 QL--EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS----------------------QF-VVTA--QIAHPDG 396 (619)
T ss_dssp CC--SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----------------------EE-EECS--SCSCCCE
T ss_pred ec--cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc----------------------EE-EEEC--CCCCcCc
Confidence 11 0234578899998655565554 467777766533110 00 0110 1234567
Q ss_pred eeecCCCcEEEEec--CCeEEEEEcccceEEEee-cCCCCCeeEEEEecCCCcEEEEeeC--CCeEEEEeeccceeeeee
Q 001343 837 IALSKNDSYVMSAT--GGKISLFNMMTFKVMTTF-MSPPPASTFLAFHPQDNNIIAIGTE--DSTIHIYNVRVDELCVWS 911 (1096)
Q Consensus 837 l~~s~dg~~la~~~--dg~v~iwd~~~~~~~~~~-~~h~~~i~~l~~s~~d~~~l~s~~~--dg~i~iw~~~~~~~~~w~ 911 (1096)
+++...++.|..+. .+.|.+.++... ....+ ...-....+|++.| ....|..+.. .+.|...+++...
T Consensus 397 lAvD~~~~~lY~tD~~~~~I~v~~~~G~-~~~~l~~~~l~~P~~iavdp-~~G~ly~tD~g~~~~I~r~~~dG~~----- 469 (619)
T 3s94_A 397 IAVDWVARNLYWTDTGTDRIEVTRLNGT-MRKILISEDLEEPRAIVLDP-MVGYMYWTDWGEIPKIERAALDGSD----- 469 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECTTCCSEEEEEEET-TTTEEEEEECSSSCEEEEEETTSCS-----
T ss_pred eEEecccCcEEEEeCCCCcEEEEeCCCC-eEEEEEECCCCCeeeEEEEc-CCCcEEEecCCCCCEEEEEccCCCc-----
Confidence 99987665555554 488999998543 33333 23446788999999 5334444432 3455555554332
Q ss_pred ccccccccceeeecCCCCCCCCCceEEEecCCcEEEE--EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcE
Q 001343 912 IDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV--VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQL 989 (1096)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 989 (1096)
...+ ..+.- .....+++++++..|.. +..+.|..+++.... .+.+.... ......+++..+ .+
T Consensus 470 --------~~~l--~~~~l-~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~-~~~~~~~~--l~~P~glav~~~-~l 534 (619)
T 3s94_A 470 --------RVVL--VNTSL-GWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG-RRVLVEDK--IPHIFGFTLLGD-YV 534 (619)
T ss_dssp --------CEEE--ECSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CEEEEECC--CCSSCCEEEETT-EE
T ss_pred --------cEEE--EeCCC-CCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc-eEEEeccC--CCCcEEEEEECC-EE
Confidence 0011 11111 25678999987766666 456789889886443 23332111 233456665433 34
Q ss_pred EEEEecCCcEEEEecCCCc
Q 001343 990 VFATFCDGNIGVFDADTLR 1008 (1096)
Q Consensus 990 la~~~~dg~i~vwd~~~~~ 1008 (1096)
..+-...+.|...+..+|.
T Consensus 535 y~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 535 YWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEECTTSSCEEEEESSSCC
T ss_pred EEeecCCCeEEEEEcCCCc
Confidence 4444456677777777763
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.05 E-value=2.3e-08 Score=108.85 Aligned_cols=267 Identities=10% Similarity=-0.031 Sum_probs=160.6
Q ss_pred eEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE----------cCCeEEEEeCCCCeEEEEeecCCC-----C
Q 001343 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----------EDSQIKFWDMDNVNILTSTDAEGG-----L 629 (1096)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~-----~ 629 (1096)
.|.++|..+++.+.++..... + .+.++|++++++++. .++.|.+||..+++.+..+..... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 888999999999999976555 4 599999999998886 368899999999999999875411 0
Q ss_pred CCccEEEEeCCCCEEEEEEC--CCcEEE--EEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEec
Q 001343 630 PNLPRLRFSKEGNLLAVTTA--DNGFKI--LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1096)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~ 705 (1096)
.....++++|||++++++.. +..+.+ +|..+ ...+.... +..+.|+|+...
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v~~---------~~~~~p~g~~~~------------ 178 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKSAS---------CFHIHPGAAATH------------ 178 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEECSS---------CCCCEEEETTEE------------
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEECCC---------ceEEccCCCeEE------------
Confidence 24678999999999998874 456888 88765 22221100 011233333221
Q ss_pred cCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeec-CCceEE---EEcCCCCCCcccEEEEEEecCCceEEE
Q 001343 706 SSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVD-SGQCRL---VTMPESTDTSSKVVRLLYTNSAVGLLA 781 (1096)
Q Consensus 706 ~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~---~~~~~~~~~~~~i~~l~~s~~~~~l~~ 781 (1096)
++.+.|+.+.+.++..... .+.... ..++- ...+. . ++++..++.
T Consensus 179 ------------------------~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~v---g~~P~---~-~~~~~~~~~ 227 (368)
T 1mda_H 179 ------------------------YLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC---SSQAA---Q-ANYPGMLVW 227 (368)
T ss_dssp ------------------------ECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCB---CSCCE---E-ETTTTEEEE
T ss_pred ------------------------EEEcCCCCEEEEECccccccCCeEEEEeeeeeeC---CCCcc---c-cccCCEEEE
Confidence 1222233333333321000 000000 00000 11222 3 566665666
Q ss_pred eecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEec--C--------
Q 001343 782 LGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--G-------- 851 (1096)
Q Consensus 782 ~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~--d-------- 851 (1096)
.+. +.+.+.|+..... + .+..|.+.+........ .......++++||++.+.++. .
T Consensus 228 vs~-~~V~viD~~~~~~----~-----v~~~~~~~~~~~~~~~~----~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~ 293 (368)
T 1mda_H 228 AVA-SSILQGDIPAAGA----T-----MKAAIDGNESGRKADNF----RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAA 293 (368)
T ss_dssp CBS-SCCEEEECCSSCC----E-----EECCCCSSCTHHHHTTE----EECSSSCEEEETTTTEEEEEEEECSSCTTSCE
T ss_pred EcC-CEEEEEECCCCcc----e-----EEEEEEecccccccccc----ccCcceeeEEcCCCCEEEEEeccccCcccccC
Confidence 666 7888877642110 0 11123322111000000 112233378999998777643 2
Q ss_pred CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCc-EEEEee-CCCeEEEEeeccce
Q 001343 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN-IIAIGT-EDSTIHIYNVRVDE 906 (1096)
Q Consensus 852 g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~-~l~s~~-~dg~i~iw~~~~~~ 906 (1096)
+.+.++|+.+++.++++.... ....++|+| |++ ++++.. .+++|.++|+.+.+
T Consensus 294 ~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 294 ENTSSVTASVGQTSGPISNGH-DSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEEEEEESSSCCEEECCEEEE-EECEEEECC-SSSCEEEEEETTTTEEEEEESSSCE
T ss_pred CCEEEEECCCCeEEEEEECCC-CcceEEECC-CCCEEEEEccCCCCeEEEEECCCCc
Confidence 357799999999998886443 578999999 777 556666 59999999999988
No 231
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.03 E-value=7.2e-09 Score=112.92 Aligned_cols=267 Identities=7% Similarity=-0.081 Sum_probs=170.3
Q ss_pred EEEEEeCCC----eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE---------
Q 001343 359 LLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF--------- 425 (1096)
Q Consensus 359 llasg~~dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~--------- 425 (1096)
++++...++ .|.+.|..+++.+.+ +.-...+ .+.++||+++++++.
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~-------------------i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G 92 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHSGSDFALASTSFARSAKG 92 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTTSSCEEEEEEEETTTTSS
T ss_pred EEEECCccCCccceEEEEECCCCeEEEE-------------------EeCCCCC--ceEECCCCCEEEEEcccccccccC
Confidence 455555455 888999999988764 1112234 799999999999886
Q ss_pred -CCCeEEEEEccCCCccccceeeccc-----ccCEEEEEEecCCCcEEEEEEeC--CCcEEE--EE-cCCceEEEeeCCC
Q 001343 426 -TKHLIQLYSYAGSNDLRQHSQIDAH-----VGAVNDLAFAYPNKLLCVVTCGD--DKLIKV--WE-LSGRKLFNFEGHE 494 (1096)
Q Consensus 426 -~dg~i~vwd~~~~~~~~~~~~l~~h-----~~~v~~l~~s~d~~~~~l~s~s~--d~~i~i--wd-~~~~~~~~~~~~~ 494 (1096)
.++.|.+||..+++.+..+. +.+. ......++|+|||+ +++.+.. +..|.+ +| .+ +..+.--.
T Consensus 93 ~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk--~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~ 166 (368)
T 1mda_H 93 KRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSA--CLLFFLFGSSAAAGLSVPGASD---DQLTKSAS 166 (368)
T ss_dssp SEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSS--CEEEEECSSSCEEEEEETTTEE---EEEEECSS
T ss_pred CCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCC--EEEEEccCCCCeEEEEEEchhh---ceEEECCC
Confidence 36789999999998877432 2100 13456899999999 4555543 467888 88 45 44443211
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC-----CCeee----EEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCe
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-----MGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~----~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~ 565 (1096)
. ..+.|.+. ..+++.+.||.+.+.|+++ ++... .+.....+. . ++++..++..+. +.
T Consensus 167 -~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-----~~ 232 (368)
T 1mda_H 167 -C---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-----SS 232 (368)
T ss_dssp -C---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----SC
T ss_pred -c---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----CE
Confidence 1 11233333 3556677888888888876 22111 011112233 3 566666655541 67
Q ss_pred EEEEeCCCCe--eeEEEcCc------Cc---cceEEEEEeCCCCEEEEEEc-C--------CeEEEEeCCCCeEEEEeec
Q 001343 566 LVEWNESEGT--IKRTYAGF------RK---KSNGVVQFDTTQNHFLAVGE-D--------SQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 566 i~iwd~~~~~--~~~~~~~~------~~---~~i~~~~~~~~~~~l~~~~~-d--------g~i~iwd~~~~~~~~~~~~ 625 (1096)
+.+.|..+.. .+..+... .. .....+.++|+++.++++.. . +.+.++|+.+.+.+..+..
T Consensus 233 V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v 312 (368)
T 1mda_H 233 ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN 312 (368)
T ss_dssp CEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE
T ss_pred EEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC
Confidence 8888886532 22222111 00 01112679999998887643 2 3566999999999888875
Q ss_pred CCCCCCccEEEEeCCCC-EEEEEE-CCCcEEEEEcCCCccccccccC
Q 001343 626 EGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIGLRSLRAVEN 670 (1096)
Q Consensus 626 ~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 670 (1096)
.. ....++|+|||+ ++++.. .++.|.++|+.++ +.++.+..
T Consensus 313 g~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~v 355 (368)
T 1mda_H 313 GH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVEL 355 (368)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECCC
T ss_pred CC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEEC
Confidence 54 478999999997 566666 5899999999988 55555543
No 232
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.03 E-value=4.5e-08 Score=117.38 Aligned_cols=135 Identities=13% Similarity=0.042 Sum_probs=90.3
Q ss_pred cEEEEEECCCeEEEEEcCCCCeeeEEeCCCCc-----------EEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW-----------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
..+++++.++.|..+|..+++.+..+...... ...+++ ++..+++++. ++.|+.+|..+|+.+
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~----dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAW----DGRLIALDAATGKEV 151 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcC----CCEEEEEECCCCCEE
Confidence 46777788899999999988888877654321 112333 4556777665 889999999999999
Q ss_pred EEEcCc-Cc---cceE-EEEEeCCCCEEEEEEc------CCeEEEEeCCCCeEEEEeecCCCC-----------------
Q 001343 578 RTYAGF-RK---KSNG-VVQFDTTQNHFLAVGE------DSQIKFWDMDNVNILTSTDAEGGL----------------- 629 (1096)
Q Consensus 578 ~~~~~~-~~---~~i~-~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~----------------- 629 (1096)
-.+... .. ..+. .... .+..+++++. ++.|+.||..+|+.+..+......
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 888754 10 0111 1111 2455666553 699999999999999887653321
Q ss_pred -------------CCccEEEEeCCCCEEEEEECCC
Q 001343 630 -------------PNLPRLRFSKEGNLLAVTTADN 651 (1096)
Q Consensus 630 -------------~~v~~~~~s~~~~~l~~~~~dg 651 (1096)
.....++++|++.+++.++.++
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~ 264 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNG 264 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCE
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCC
Confidence 0113578888888888877664
No 233
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.03 E-value=8.2e-08 Score=115.37 Aligned_cols=138 Identities=10% Similarity=0.018 Sum_probs=89.4
Q ss_pred cEEEEEECCCeEEEEEcCCCCeeeEEeCCCCc----------E-EEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW----------C-TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------i-~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
..+++++.++.|..+|..+++.+..+...... + ..+++ ++..+++++. ++.|+.+|..+|+.+
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~----dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVL----DGRLEAIDAKTGQRA 144 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEcc----CCEEEEEECCCCCEe
Confidence 46778888899999999999988877654321 0 11222 3456777665 899999999999998
Q ss_pred EEEcCc-CccceEEEEEeC--CCCEEEEEE------cCCeEEEEeCCCCeEEEEeecCCCC-------------------
Q 001343 578 RTYAGF-RKKSNGVVQFDT--TQNHFLAVG------EDSQIKFWDMDNVNILTSTDAEGGL------------------- 629 (1096)
Q Consensus 578 ~~~~~~-~~~~i~~~~~~~--~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~------------------- 629 (1096)
-.+... .......+..+| .+..+++++ .+|.|+.||..+|+.+..+......
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred eeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 877653 110000011111 134555554 3689999999999998877531100
Q ss_pred ----------CCccEEEEeCCCCEEEEEECCCc
Q 001343 630 ----------PNLPRLRFSKEGNLLAVTTADNG 652 (1096)
Q Consensus 630 ----------~~v~~~~~s~~~~~l~~~~~dg~ 652 (1096)
.....++++|++.+++.++.++.
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~ 257 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGS 257 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCC
Confidence 01135788888888888887764
No 234
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.02 E-value=2.4e-08 Score=109.77 Aligned_cols=260 Identities=8% Similarity=0.050 Sum_probs=154.5
Q ss_pred ccEEEEEEecCCceEEEeec--CCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeeeecCC
Q 001343 765 SKVVRLLYTNSAVGLLALGS--NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1096)
Q Consensus 765 ~~i~~l~~s~~~~~l~~~~~--dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~d 842 (1096)
..+..++++++|+.+++... ++.+++|.++ +|+.. .|.. .. . ... .+...+..++++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~------~g~~~------~~p~--~~--~-~~~--~~~~~p~gv~~d~~ 77 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT------QDGLI------PFPP--QS--G-NAI--ITFDTVLGIKSDGN 77 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE------TTEEE------ESCC--CC--S-SCC--CCCSCEEEEEECSS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEEC------CCCee------cCCC--cc--c-Ccc--cceeEeeEEEEcCC
Confidence 57889999999987776532 3436667664 12211 1100 00 0 011 15567899999999
Q ss_pred CcEEEEec------CCeEEEEEcccceEEEeecCC------CCCeeEEEEecCCCcEEEEee---CCCeEEEEeecccee
Q 001343 843 DSYVMSAT------GGKISLFNMMTFKVMTTFMSP------PPASTFLAFHPQDNNIIAIGT---EDSTIHIYNVRVDEL 907 (1096)
Q Consensus 843 g~~la~~~------dg~v~iwd~~~~~~~~~~~~h------~~~i~~l~~s~~d~~~l~s~~---~dg~i~iw~~~~~~~ 907 (1096)
|+++++.. +++|.+||+.+++.++.+..+ ......++++++++..+++.. .++.|.+||+.+++.
T Consensus 78 g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 78 GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 98777653 368999999999877766432 245689999983355555555 678999999987761
Q ss_pred eeeeccc---cccc------cceeee--cCCCCC---CCCCceEEEecCCcEEEE-Eecc-eEEEEEcccc--------e
Q 001343 908 CVWSIDT---WEKR------KSVTIH--IPAGKT---PTGDTRVQFNADQVRMLV-VHET-QLAIYDASKM--------E 963 (1096)
Q Consensus 908 ~~w~~~~---~~~~------~~~~~~--~~~~~~---~~~v~~v~fs~dg~~l~~-~~d~-~i~iwd~~~~--------~ 963 (1096)
...++. .... ....+. ...+.. ...+..++|+|||+.|++ ..++ .+..++.... +
T Consensus 158 -~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~ 236 (343)
T 2qe8_A 158 -ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE 236 (343)
T ss_dssp -EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred -EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence 111111 0000 000000 000000 014578999999998888 3333 4544443211 1
Q ss_pred ecccccc-CCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCC
Q 001343 964 RIRQWTP-QDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEP 1042 (1096)
Q Consensus 964 ~~~~~~~-~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~ 1042 (1096)
....+.. ++ ......++++++|.++++...++.|.+||..++++....... + ..++..++|.+ ++
T Consensus 237 ~~~~~~~~g~--~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~---------~--~~~p~~va~~~-~g 302 (343)
T 2qe8_A 237 LGSKIERYSE--KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE---------K--LSWTDSFNFGS-DG 302 (343)
T ss_dssp HHTTCEEEEE--CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG---------G--GSCEEEEEECT-TS
T ss_pred hhcceEeccc--CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC---------c--eecCCeeEECC-CC
Confidence 1111110 11 345678999999999998889999999998667654333211 1 12333699998 88
Q ss_pred ceEEEEeeCCcEEEEc
Q 001343 1043 NQFAIGLTDGSVKVME 1058 (1096)
Q Consensus 1043 ~~l~s~~~dg~i~vW~ 1058 (1096)
.++++.+..+.+.+|.
T Consensus 303 ~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 303 YLYFDCNQLHHSAPLN 318 (343)
T ss_dssp CEEEEECCGGGSGGGB
T ss_pred cEEEEeCccccccccc
Confidence 8888877665554443
No 235
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.00 E-value=6.5e-08 Score=115.99 Aligned_cols=308 Identities=13% Similarity=0.078 Sum_probs=191.2
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCcccccc-ccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS-IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~ 437 (1096)
.+++++.++.|.-+|..+|+.+-+.... ....... ...+.. -..+++ ++..|++++.|+.|..+|..+
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~-------~~~~~~~~~~~~~~--~~~~a~--~~~~v~v~~~dg~l~alD~~t 147 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQ-------IDRSTGFKGCCDVV--NRGVAL--WKGKVYVGAWDGRLIALDAAT 147 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCC-------CCGGGGGGSSSCSC--CCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCC-------CCccccccccccCC--CCCceE--ECCEEEEEcCCCEEEEEECCC
Confidence 3666677899999999999887442211 0000000 000000 011222 467888889999999999999
Q ss_pred CCccccceeeccc--ccCEEEEEEecCCCcEEEEEEeC------CCcEEEEE-cCCceEEEeeCCCCC------------
Q 001343 438 SNDLRQHSQIDAH--VGAVNDLAFAYPNKLLCVVTCGD------DKLIKVWE-LSGRKLFNFEGHEAP------------ 496 (1096)
Q Consensus 438 ~~~~~~~~~l~~h--~~~v~~l~~s~d~~~~~l~s~s~------d~~i~iwd-~~~~~~~~~~~~~~~------------ 496 (1096)
|+.+-....-... ...+..--...++ .++.++. ++.|+.+| .+|+.+..+......
T Consensus 148 G~~~W~~~~~~~~~~~~~~~~~p~v~~~---~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~ 224 (677)
T 1kb0_A 148 GKEVWHQNTFEGQKGSLTITGAPRVFKG---KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKR 224 (677)
T ss_dssp CCEEEEEETTTTCCSSCBCCSCCEEETT---EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHH
T ss_pred CCEEeeecCCcCcCcCcccccCcEEECC---EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccc
Confidence 9876533211000 0112111111234 3444443 79999999 899998877543221
Q ss_pred --------------------eEEEEeeecCCCcEEEEEECCC-------------------eEEEEEcCCCCeeeEEeCC
Q 001343 497 --------------------VYSICPHHKENIQFIFSTAIDG-------------------KIKAWLYDTMGSRVDYDAP 537 (1096)
Q Consensus 497 --------------------v~~~~~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~ 537 (1096)
...+++.+ ++..++.+..++ .|..+|.++++.+..+...
T Consensus 225 g~~~w~~~g~~~~~~~g~~~w~~~~~d~--~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~ 302 (677)
T 1kb0_A 225 AARTWDPSGKWWEAGGGGTMWDSMTFDA--ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET 302 (677)
T ss_dssp HHTTSCGGGCHHHHCEECCCCSCEEEET--TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS
T ss_pred ccccccccCceeEeCCCcccccceeEcC--CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecC
Confidence 02345544 456787777664 5999999999988876643
Q ss_pred CC---------cEEEEEEcCCC---CEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc----------cce-------
Q 001343 538 GH---------WCTTMLYSADG---SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK----------KSN------- 588 (1096)
Q Consensus 538 ~~---------~i~~l~~s~~~---~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----------~~i------- 588 (1096)
.+ ....+....+| ..++.+.. ++.++++|..+|+.+..+..... ..+
T Consensus 303 ~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~----~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~ 378 (677)
T 1kb0_A 303 PGDNWDYTSTQPMILADIKIAGKPRKVILHAPK----NGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARD 378 (677)
T ss_dssp TTCCSCCCCCSCCEEEEEEETTEEEEEEEECCT----TSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGC
T ss_pred CCcccccccCCCcEEEecccCCcEeeEEEEECC----CCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCc
Confidence 21 12223333467 56666655 89999999999998876653211 001
Q ss_pred -----------------EEEEEeCCCCEEEEEEcC-------------------------------------------Ce
Q 001343 589 -----------------GVVQFDTTQNHFLAVGED-------------------------------------------SQ 608 (1096)
Q Consensus 589 -----------------~~~~~~~~~~~l~~~~~d-------------------------------------------g~ 608 (1096)
..++++|+...+++...+ |.
T Consensus 379 ~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~ 458 (677)
T 1kb0_A 379 GSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGR 458 (677)
T ss_dssp TTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEE
T ss_pred CCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccE
Confidence 146788988888876431 78
Q ss_pred EEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecC
Q 001343 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1096)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 688 (1096)
|..||+.+++.+....... .+....+..++.++++++.||.+++||..++ +.+..+..... . ...-+.+..+
T Consensus 459 l~A~D~~tG~~~W~~~~~~---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG-~~lw~~~~~~~-~---~~~p~~y~~~ 530 (677)
T 1kb0_A 459 LLAWDPVAQKAAWSVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATG-EKLWEAPTGTG-V---VAAPSTYMVD 530 (677)
T ss_dssp EEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSC-C---CSCCEEEEET
T ss_pred EEEEeCCCCcEEeecCCCC---CCcCcceEeCCCEEEEECCCCcEEEEECCCC-ceeeeeeCCCC-c---ccCCEEEEeC
Confidence 9999999999988887543 3455567778889999999999999999999 44444433221 1 1223566788
Q ss_pred CCeEEe
Q 001343 689 ASSAVS 694 (1096)
Q Consensus 689 g~~lv~ 694 (1096)
|+..++
T Consensus 531 G~~~v~ 536 (677)
T 1kb0_A 531 GRQYVS 536 (677)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 876543
No 236
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.00 E-value=5.6e-07 Score=100.45 Aligned_cols=270 Identities=10% Similarity=0.016 Sum_probs=168.7
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~ 438 (1096)
.+.+++.++.|..+|..+|+.+-..... ... . ........+.+. ...++..+++++.++.|..+|..+|
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~-------~~~-~--~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG 123 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLA-------EKD-G--WFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDG 123 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECC-------C------CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTC
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCc-------ccc-c--cccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCC
Confidence 3667778999999999999876431110 000 0 000001223221 2224667888889999999999998
Q ss_pred CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCCe-----EEEEeeecCCCcEEE
Q 001343 439 NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV-----YSICPHHKENIQFIF 512 (1096)
Q Consensus 439 ~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~l~ 512 (1096)
+..-.. ............. + . .++.++.++.|..+| .+|+.+..+....... ..... .+..++
T Consensus 124 ~~~W~~---~~~~~~~~~p~~~-~-~--~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~----~~~~v~ 192 (376)
T 3q7m_A 124 TVAWQT---KVAGEALSRPVVS-D-G--LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT----AFGAAV 192 (376)
T ss_dssp CEEEEE---ECSSCCCSCCEEE-T-T--EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE----ETTEEE
T ss_pred CEEEEE---eCCCceEcCCEEE-C-C--EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE----ECCEEE
Confidence 865432 1111111111222 3 3 577788899999999 8999887776432211 11122 124688
Q ss_pred EEECCCeEEEEEcCCCCeeeEEeCCCCc----EEE---EEEcC--CCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc
Q 001343 513 STAIDGKIKAWLYDTMGSRVDYDAPGHW----CTT---MLYSA--DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1096)
Q Consensus 513 s~~~dg~i~iwd~~~~~~~~~~~~~~~~----i~~---l~~s~--~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 583 (1096)
.++.+|.+..+|..+++........... +.. +...| .+..+++++. ++.+..+|..+++.+......
T Consensus 193 ~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~----~g~l~~~d~~tG~~~w~~~~~ 268 (376)
T 3q7m_A 193 VGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY----NGNLTALDLRSGQIMWKRELG 268 (376)
T ss_dssp ECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT----TSCEEEEETTTCCEEEEECCC
T ss_pred EEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec----CcEEEEEECCCCcEEeeccCC
Confidence 8888999999999998887766543210 000 00111 2455666654 789999999999988766532
Q ss_pred CccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCc
Q 001343 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1096)
Q Consensus 584 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 662 (1096)
....+.. ++..+++++.++.|+.+|..+++.+......... .+..... .+..|++++.+|.+..+|..++.
T Consensus 269 ---~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 269 ---SVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHR-LLTSPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp ---CEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTS-CCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred ---CCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCC-cccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 2233333 4678888999999999999999988776522211 2233333 35688889999999999998883
No 237
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.99 E-value=0.00019 Score=84.52 Aligned_cols=528 Identities=9% Similarity=-0.015 Sum_probs=276.1
Q ss_pred CCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE-ECCCeEEEEEccCCCcccc
Q 001343 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLRQ 443 (1096)
Q Consensus 365 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~-~~dg~i~vwd~~~~~~~~~ 443 (1096)
..+.|+..++.+....... .+. .-..+..|+|++.+..|..+ ..++.|..++++......
T Consensus 13 ~~~~I~~i~l~~~~~~~~~-----------------~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~- 73 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAI-----------------PLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH- 73 (628)
T ss_dssp ETTEEEEEESSCTTCEEEC-----------------CCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-
T ss_pred eCCcEEEEECCCCCcceEE-----------------EcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-
Confidence 5678999998765432110 011 23468899999977666655 456889999987643221
Q ss_pred ceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEee-CCCCCeEEEEeeecCCCcEEEEEE--CCCeE
Q 001343 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTA--IDGKI 520 (1096)
Q Consensus 444 ~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i 520 (1096)
.+.........+++.+.+.. +.++-...+.|.+.+.+|.....+. ..-.....+++.|. +| .|+... ..+.|
T Consensus 74 --v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G-~lY~tD~g~~~~I 148 (628)
T 4a0p_A 74 --VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EG-FMYWTEWGGKPKI 148 (628)
T ss_dssp --EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TT-EEEEEECSSSCEE
T ss_pred --EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CC-eEEEeCCCCCCEE
Confidence 12222245778999877664 4555666788999996665544443 33445688998764 33 454444 25677
Q ss_pred EEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEE
Q 001343 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1096)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 600 (1096)
...+++........ ........+++++++..|+.+.. ..+.|...|+..... +.+..... ....+++.. +..+
T Consensus 149 ~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav~~-~~ly 221 (628)
T 4a0p_A 149 DRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDLP-HPFGLTQYQ-DYIY 221 (628)
T ss_dssp EEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECCS-CEEEEEEET-TEEE
T ss_pred EEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccCC-CceEEEEEC-CEEE
Confidence 77777654443333 34457889999999888887753 367899999875443 33332222 334566654 3333
Q ss_pred EEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcc
Q 001343 601 LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPI 680 (1096)
Q Consensus 601 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 680 (1096)
++-...+.|...|..+++....+..... .+..+........- ... .+.. ..+.+
T Consensus 222 ~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~--------------~~n-~C~~---------~ng~C 275 (628)
T 4a0p_A 222 WTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS--------------GWN-ECAS---------SNGHC 275 (628)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC--------------CCC-TTTT---------TGGGC
T ss_pred EecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc--------------cce-Eecc---------CCCCc
Confidence 3434578888888777766555543221 23333222111000 000 0000 01112
Q ss_pred eeEEeecC-CCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCCCCccccCCCCCccceeeeeeecCCceEEEEcCC
Q 001343 681 ESVALKVS-ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPE 759 (1096)
Q Consensus 681 ~~~~~s~~-g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 759 (1096)
..+++... +.+.-+. ..+... . .....+..++ .+++.+. ...|+-..+.. .......++-
T Consensus 276 ~~~C~~~~~~~~~C~C-~~g~~l-~-----------~d~~~C~~~~-~~Ll~s~-~~~i~~i~l~~----~~~~~~~l~~ 336 (628)
T 4a0p_A 276 SHLCLAVPVGGFVCGC-PAHYSL-N-----------ADNRTCSAPT-TFLLFSQ-KSAINRMVIDE----QQSPDIILPI 336 (628)
T ss_dssp SSEEEEETTTEEEEEC-STTCEE-C-----------TTSSCEECCS-SEEEEEE-TTEEEEECCCT----TCCCCEECCC
T ss_pred chhhhcCCCCCeeEEc-CCCcEe-c-----------ccCCcCcccc-ceeeeec-cceEEEEeccc----ccCceEEEEe
Confidence 22333222 3222111 111000 0 0000001111 1222211 13333333321 1110011111
Q ss_pred CCCCcccEEEEEEecCCceEEEeec-CCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeeee
Q 001343 760 STDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838 (1096)
Q Consensus 760 ~~~~~~~i~~l~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~ 838 (1096)
..-..+..++|.+....|+.+.. .+.|+.++++.... . ..+.....+......+..++
T Consensus 337 --~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~-----------~--------~v~~~~~~~~~~~~~p~glA 395 (628)
T 4a0p_A 337 --HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG-----------F--------TVVVSSVPSQNLEIQPYDLS 395 (628)
T ss_dssp --TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----------E--------EEEC--------CCCEEEEE
T ss_pred --hhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc-----------e--------EEEEcccccccccCCcceEE
Confidence 02356788999987666665554 56776666432110 0 00000000000133577899
Q ss_pred ecCCCcEEEEec--CCeEEEEEcccceEEEee-cCCCCCeeEEEEecCCCcEEEEeeCCC--eEEEEeeccceeeeeecc
Q 001343 839 LSKNDSYVMSAT--GGKISLFNMMTFKVMTTF-MSPPPASTFLAFHPQDNNIIAIGTEDS--TIHIYNVRVDELCVWSID 913 (1096)
Q Consensus 839 ~s~dg~~la~~~--dg~v~iwd~~~~~~~~~~-~~h~~~i~~l~~s~~d~~~l~s~~~dg--~i~iw~~~~~~~~~w~~~ 913 (1096)
+...++.|..++ .+.|.+.++. |+....+ ........+|++.|..+.++.+-.... .|...+++...
T Consensus 396 vD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~------- 467 (628)
T 4a0p_A 396 IDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTE------- 467 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCS-------
T ss_pred eeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCC-------
Confidence 998877666554 4889999984 5555444 334567889999994444444432222 34444444332
Q ss_pred ccccccceeeecCCCCCCCCCceEEEecCCcEEEE--EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEE
Q 001343 914 TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV--VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVF 991 (1096)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la 991 (1096)
...+- ...- .....+++.+++..|.. +..+.|...+++. ...+.+.... .....++++.. +.++.
T Consensus 468 ------~~~l~--~~~l-~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG-~~r~~~~~~~--~~~P~glav~~-~~ly~ 534 (628)
T 4a0p_A 468 ------REVLF--FSGL-SKPIALALDSRLGKLFWADSDLRRIESSDLSG-ANRIVLEDSN--ILQPVGLTVFE-NWLYW 534 (628)
T ss_dssp ------CEEEE--CSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSS--CSCEEEEEEET-TEEEE
T ss_pred ------cEEEE--eccC-CCccEEEEeCCCCEEEEEeCCCCEEEEEeCCC-CceEEEEcCC--CCCcEEEEEEC-CEEEE
Confidence 01111 1111 15688999998777766 3467899999854 3334443221 34467777644 55555
Q ss_pred EEecCCcEEEEecCCCcee
Q 001343 992 ATFCDGNIGVFDADTLRLR 1010 (1096)
Q Consensus 992 ~~~~dg~i~vwd~~~~~~~ 1010 (1096)
+-...+.|...|..+|+..
T Consensus 535 tD~~~~~i~~~~k~~G~~~ 553 (628)
T 4a0p_A 535 IDKQQQMIEKIDMTGREGR 553 (628)
T ss_dssp EETTTTEEEEEETTSSSCC
T ss_pred EECCCCeEEEEECcCCCCc
Confidence 5556678888888777633
No 238
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.99 E-value=2.7e-07 Score=103.00 Aligned_cols=256 Identities=9% Similarity=0.076 Sum_probs=163.8
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCC
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~ 438 (1096)
.+.+++.++.|..+|..+|+.+-.... ... ....++ . .+..+++++.++.|..+|..+|
T Consensus 105 ~v~v~~~~g~l~a~d~~tG~~~W~~~~-------~~~--------~~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG 163 (376)
T 3q7m_A 105 HVYIGSEKAQVYALNTSDGTVAWQTKV-------AGE--------ALSRPV----V--SDGLVLIHTSNGQLQALNEADG 163 (376)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC-------SSC--------CCSCCE----E--ETTEEEEECTTSEEEEEETTTC
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEEeC-------CCc--------eEcCCE----E--ECCEEEEEcCCCeEEEEECCCC
Confidence 366778899999999999987643110 000 011111 1 2457778888999999999998
Q ss_pred CccccceeecccccCE------EEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCCC-------eEEEEeee
Q 001343 439 NDLRQHSQIDAHVGAV------NDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP-------VYSICPHH 504 (1096)
Q Consensus 439 ~~~~~~~~l~~h~~~v------~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~~-------v~~~~~~~ 504 (1096)
+.+.... .. ..+ ...... +. .++.++.++.+..+| .+|+.+......... +..+...|
T Consensus 164 ~~~W~~~---~~-~~~~~~~~~~~~~~~--~~--~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p 235 (376)
T 3q7m_A 164 AVKWTVN---LD-MPSLSLRGESAPTTA--FG--AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTP 235 (376)
T ss_dssp CEEEEEE---CC-C-----CCCCCCEEE--TT--EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCC
T ss_pred cEEEEEe---CC-CCceeecCCCCcEEE--CC--EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCc
Confidence 7664321 11 111 112222 33 577788899999999 889988776532110 00010111
Q ss_pred cCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC
Q 001343 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1096)
Q Consensus 505 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 584 (1096)
.-.+..++.++.+|.+..+|..+++........ ....+.. ++..+++++. ++.+..+|..+++.+.......
T Consensus 236 ~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~~~--~~~~l~~~~~----~g~l~~~d~~tG~~~w~~~~~~ 307 (376)
T 3q7m_A 236 VVVNGVVFALAYNGNLTALDLRSGQIMWKRELG--SVNDFIV--DGNRIYLVDQ----NDRVMALTIDGGVTLWTQSDLL 307 (376)
T ss_dssp EEETTEEEEECTTSCEEEEETTTCCEEEEECCC--CEEEEEE--ETTEEEEEET----TCCEEEEETTTCCEEEEECTTT
T ss_pred EEECCEEEEEecCcEEEEEECCCCcEEeeccCC--CCCCceE--ECCEEEEEcC----CCeEEEEECCCCcEEEeecccC
Confidence 112357888889999999999988877665532 2444444 3556666664 7899999999999887766322
Q ss_pred ccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCcc-EEEEeCCCCEEEEEECCCcEEEEE
Q 001343 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP-RLRFSKEGNLLAVTTADNGFKILA 657 (1096)
Q Consensus 585 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iwd 657 (1096)
......... .+..+++++.+|.|+++|..+++.+........ .+. .... .+..|++++.+|.|..|+
T Consensus 308 ~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~--~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 308 HRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSS--GFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTT--CBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCC--cceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 212222222 257889999999999999999999888776332 222 2222 245788899999999886
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.97 E-value=3.9e-08 Score=107.66 Aligned_cols=282 Identities=11% Similarity=0.045 Sum_probs=178.5
Q ss_pred eeecCCCCcceEEeec-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccC
Q 001343 327 TWSLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~-h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (1096)
++.++ ..++...... +...+.++.+.++|. +..|+.+ |..+|. +++.+... ..+
T Consensus 42 l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~--l~v~t~~--l~~~d~-~g~~~~~~-------------------~~~ 96 (330)
T 3hxj_A 42 LYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT--IYFGSDK--VYAINP-DGTEKWRF-------------------DTK 96 (330)
T ss_dssp TEEEC-TTSCEEESSCGGGEEEECCEETTTTE--ECCSSCE--EEEECC-CGGGGGGS-------------------CC-
T ss_pred EEEEC-CCCcEEEEEecCCCcccceEEecCCc--EEEecCc--EEEECC-CCcEEEEE-------------------ECC
Confidence 44444 4444444433 344567888888886 3344444 888886 55543221 111
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCc
Q 001343 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 485 (1096)
........+. +..|.+++.++.|..+|.. ++... ....+...+.++...+++. +..++.++.|..+|..++
T Consensus 97 ~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~---~~~~~~~~~~~~~~~~~g~---l~vgt~~~~l~~~d~~g~ 167 (330)
T 3hxj_A 97 KAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKW---RFKTKKAIYATPIVSEDGT---IYVGSNDNYLYAINPDGT 167 (330)
T ss_dssp ----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEE---EEECSSCCCSCCEECTTSC---EEEECTTSEEEEECTTSC
T ss_pred CCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEE---EEcCCCceeeeeEEcCCCE---EEEEcCCCEEEEECCCCC
Confidence 1112222233 5567778888999999988 65443 2333444566677777776 566788899999994488
Q ss_pred eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCe
Q 001343 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1096)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~ 565 (1096)
.+..+......+.++... .++. +..++ +.|..+| .++............+.++...++|...+.. . ++.
T Consensus 168 ~~~~~~~~~~~~~~~~~d--~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t-~----~~g 236 (330)
T 3hxj_A 168 EKWRFKTNDAITSAASIG--KDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTS-L----DGH 236 (330)
T ss_dssp EEEEEECSSCCCSCCEEC--TTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEE-T----TTE
T ss_pred EeEEEecCCCceeeeEEc--CCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEc-C----CCe
Confidence 877776655566666653 3444 44555 8888898 6666666666665678888888888655543 2 678
Q ss_pred EEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEE
Q 001343 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1096)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 645 (1096)
+..+|. +++.+..+..... ....+.+.+++ .+++++.+|.|..+|. +++.+..+..... .+.++...+++. |.
T Consensus 237 l~~~~~-~g~~~~~~~~~~~-~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~--~~~~~~~d~~g~-l~ 309 (330)
T 3hxj_A 237 LYAINP-DGTEKWRFKTGKR-IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSW--IIATPVIDENGT-IY 309 (330)
T ss_dssp EEEECT-TSCEEEEEECSSC-CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSC--CCSCCEECTTCC-EE
T ss_pred EEEECC-CCCEeEEeeCCCC-ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCc--cccceEEcCCCE-EE
Confidence 888874 5666555554332 23334455444 6777888889999996 6777766665433 677788877776 55
Q ss_pred EEECCCcEEEEEcCC
Q 001343 646 VTTADNGFKILANAI 660 (1096)
Q Consensus 646 ~~~~dg~i~iwd~~~ 660 (1096)
.++.+|.+++.....
T Consensus 310 ~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 310 FGTRNGKFYALFNLE 324 (330)
T ss_dssp EECTTSCEEEEEC--
T ss_pred EEcCCCeEEEEeccc
Confidence 688899999876543
No 240
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.93 E-value=0.00058 Score=85.96 Aligned_cols=285 Identities=8% Similarity=0.017 Sum_probs=151.1
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC----CCEEE
Q 001343 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----GNYVG 422 (1096)
Q Consensus 347 V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----~~~l~ 422 (1096)
-.|+++-.+| +|+.|+..|.=.+|.+.....-....+.+. . --..-++|.+++.-.. ...|+
T Consensus 329 ~ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~-----------~-~~~N~~PI~D~~v~d~~~~~~~~i~ 394 (1158)
T 3ei3_A 329 AECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAM-----------E-TFTNLGPIVDMCVVDLERQGQGQLV 394 (1158)
T ss_dssp CSEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEE-----------E-EECCCCSEEEEEEECTTSSSCCEEE
T ss_pred ccEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeE-----------e-eecCcCCceeEEEEccCCCCCCeEE
Confidence 3566666666 688888888778887765321000000000 0 1123467877777532 23555
Q ss_pred EEE---CCCeEEEEEccCCCccccceeecccccCEEEEEEec---CCCcEEEEEEeCCCcEEEEEcCCceEEEee--CCC
Q 001343 423 VAF---TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIKVWELSGRKLFNFE--GHE 494 (1096)
Q Consensus 423 s~~---~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~---d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~~ 494 (1096)
+++ .+|.++++.-.-+-.......+.+ ...++.+.... .+. +|+.+..+.+ .++..++..+.... +..
T Consensus 395 ~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~~e~veev~~~gf~ 470 (1158)
T 3ei3_A 395 TCSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLNGEEVEETELMGFV 470 (1158)
T ss_dssp EEECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEETTEEEEECCTTCC
T ss_pred EEECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEeCCccccccccccc
Confidence 443 357888875432211111113432 35666666432 234 6676666666 45554344444332 111
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC-CcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
.....++...-++ ..++=.. ...|++.+.........+.... ..|...+.+. .+++.+. .+.+..+++..
T Consensus 471 ~~~~TL~~~~l~~-~~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-----g~~l~~fel~~ 541 (1158)
T 3ei3_A 471 DDQQTFFCGNVAH-QQLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-----GRALYYLQIHP 541 (1158)
T ss_dssp SSSCEEEEEEETT-TEEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-----TTEEEEEEEET
T ss_pred CCCCcEEEEEcCC-CeEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-----CCEEEEEEeeC
Confidence 1111222211112 2333222 2345666665544555555443 3566666553 3565553 56777777766
Q ss_pred CeeeEEEcCcCccceEEEEEeCC------CCEEEEEEc-CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEe--CCCCEE
Q 001343 574 GTIKRTYAGFRKKSNGVVQFDTT------QNHFLAVGE-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS--KEGNLL 644 (1096)
Q Consensus 574 ~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l 644 (1096)
++........-...+.|+++.+. ..++++|.. |++++|+++.+.+.+........ ....++.+. ....+|
T Consensus 542 ~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~~~L 620 (1158)
T 3ei3_A 542 QELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESSHYL 620 (1158)
T ss_dssp TEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTEEEE
T ss_pred CceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCCcEE
Confidence 54332222112236888888763 368899986 99999999998777655544321 133444433 234678
Q ss_pred EEEECCCcEEEEEcC
Q 001343 645 AVTTADNGFKILANA 659 (1096)
Q Consensus 645 ~~~~~dg~i~iwd~~ 659 (1096)
.+|-.||.+.-+.+.
T Consensus 621 ~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 621 LCALGDGALFYFGLN 635 (1158)
T ss_dssp EEEETTSEEEEEEEC
T ss_pred EEEeCCCeEEEEEEc
Confidence 888899988766653
No 241
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.90 E-value=2.3e-07 Score=100.95 Aligned_cols=237 Identities=14% Similarity=0.133 Sum_probs=152.4
Q ss_pred EEEc--CCCCcEEEEEeCCCeEEEEecCCC--CeeecccceeecccccCccccccccccC-CCCEEEEEEcCCCCEEEEE
Q 001343 350 MDFH--PSHQTLLLVGSSNGEITLWELAMR--DRLVSKPFKIWDMAACSLPFQASIFKDV-PISVSRVAWSPDGNYVGVA 424 (1096)
Q Consensus 350 v~fs--p~g~~llasg~~dg~I~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spd~~~l~s~ 424 (1096)
..++ ++++++++.|..++.|.|+|+.+. +.... +..+ ...+.... ...-..+..+|+| .++++
T Consensus 87 ~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~---k~ie--------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~ 154 (462)
T 2ece_A 87 PNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKII---KVIE--------PEEVKKVSGYSRLHTVHCGPDA-IYISA 154 (462)
T ss_dssp TTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEE---EEEC--------HHHHHHHHCEEEEEEEEECSSC-EEEEE
T ss_pred cccCCCccCCEEEEccCCCCeEEEEECCCCCCCceee---eeec--------hhhcccccCCCcccceeECCCe-EEEEc
Confidence 3457 899988888888999999999754 11111 1100 00001111 1245667889999 66665
Q ss_pred ECC------CeEEEEEccCCCccccceeecccc-cCEEEEEEecCCCcEEEEEEe-------------------CCCcEE
Q 001343 425 FTK------HLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCG-------------------DDKLIK 478 (1096)
Q Consensus 425 ~~d------g~i~vwd~~~~~~~~~~~~l~~h~-~~v~~l~~s~d~~~~~l~s~s-------------------~d~~i~ 478 (1096)
..+ |.|.++|.++++.+.... ..... .--..+.|+|+++ .+++.. .+.+|.
T Consensus 155 ~g~~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~ 231 (462)
T 2ece_A 155 LGNEEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIH 231 (462)
T ss_dssp EEETTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEE
T ss_pred CCCcCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEE
Confidence 544 789999999988776432 12222 2345688999999 777774 478999
Q ss_pred EEE-cCCceEEEeeCC-C-CCeEEEEeeecCCCcEEEEEE------CCCeEEEEEcCCCCeee--E--EeCC--------
Q 001343 479 VWE-LSGRKLFNFEGH-E-APVYSICPHHKENIQFIFSTA------IDGKIKAWLYDTMGSRV--D--YDAP-------- 537 (1096)
Q Consensus 479 iwd-~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~--~--~~~~-------- 537 (1096)
+|| .+++.+.++..- . .....+.|.++++++++++++ .+++|.+|..+.+.... . +...
T Consensus 232 v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~ 311 (462)
T 2ece_A 232 FWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPE 311 (462)
T ss_dssp EEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCG
T ss_pred EEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccc
Confidence 999 777777777642 1 234456664455777777776 46788887765422111 1 1100
Q ss_pred --------CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC---CeeeEEEcCcCc---------c----ceEEEEE
Q 001343 538 --------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---GTIKRTYAGFRK---------K----SNGVVQF 593 (1096)
Q Consensus 538 --------~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~---------~----~i~~~~~ 593 (1096)
......+.+|+||++|.++.. +.+.|.++|+.. .+.+..+..... . ....+.+
T Consensus 312 ~~~~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~l 388 (462)
T 2ece_A 312 ILKPFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEI 388 (462)
T ss_dssp GGGGGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEE
T ss_pred cccccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEE
Confidence 234678999999999998765 478999999853 355555543210 0 1355889
Q ss_pred eCCCCEEEEEE
Q 001343 594 DTTQNHFLAVG 604 (1096)
Q Consensus 594 ~~~~~~l~~~~ 604 (1096)
+|+|++++++.
T Consensus 389 SpDGk~LyVaN 399 (462)
T 2ece_A 389 SRDGRRVYVTN 399 (462)
T ss_dssp CTTSSEEEEEC
T ss_pred cCCCCEEEEEc
Confidence 99999999886
No 242
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.89 E-value=9e-10 Score=122.16 Aligned_cols=190 Identities=7% Similarity=-0.043 Sum_probs=112.6
Q ss_pred CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCCCC
Q 001343 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1096)
Q Consensus 417 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~~~ 495 (1096)
++..|++++.||.|+.||..+|+.+.. +.. +.+.+..+..++. .+++++.|+.|+.|| .+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 578999999999999999999987653 322 4455555666776 677788999999999 78988777654321
Q ss_pred CeEEEEeeecC-CCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 496 PVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 496 ~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
... ...|.- .+..+++++.|+.++.||..+++....+..+. ...++|++..+++++. ++.|+.||.++|
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 110 001111 23478888999999999999988877665543 2345568888888876 889999999999
Q ss_pred eeeEEEcCcCccceEEEEEeCCC---CEEEEEEcCCeEEEEeCCCCeEEEEeecC
Q 001343 575 TIKRTYAGFRKKSNGVVQFDTTQ---NHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1096)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1096)
+.+..+.... .....+..+. ..+++++.+|.|+.||..+++.+......
T Consensus 151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 202 (369)
T 2hz6_A 151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA 202 (369)
T ss_dssp SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS
T ss_pred CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC
Confidence 8776654321 1112233322 56778899999999999999988877643
No 243
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.88 E-value=8.7e-08 Score=104.85 Aligned_cols=261 Identities=13% Similarity=0.064 Sum_probs=168.8
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCC
Q 001343 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1096)
Q Consensus 349 ~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg 428 (1096)
+..+..+|. +..|+.++.|..|| .+++.+.. ...+...+.++...++|... +++.+
T Consensus 24 ~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~-------------------~~~~~~~~~~~~~~~~g~l~-v~t~~- 79 (330)
T 3hxj_A 24 SPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWF-------------------FKSGEIIECRPSIGKDGTIY-FGSDK- 79 (330)
T ss_dssp CCEECTTSC--EECSSTTTTTEEEC-TTSCEEES-------------------SCGGGEEEECCEETTTTEEC-CSSCE-
T ss_pred CceEccCCe--EEEEcCCCEEEEEC-CCCcEEEE-------------------EecCCCcccceEEecCCcEE-EecCc-
Confidence 345556775 55567789999999 88876542 11123346777777777644 44444
Q ss_pred eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEEEEeeecCCC
Q 001343 429 LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENI 508 (1096)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 508 (1096)
|..+|. +++.+.. +...........+. ++ .+..++.++.|..+|..++...........+.++...+ ++
T Consensus 80 -l~~~d~-~g~~~~~---~~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~--~g 148 (330)
T 3hxj_A 80 -VYAINP-DGTEKWR---FDTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSE--DG 148 (330)
T ss_dssp -EEEECC-CGGGGGG---SCC-----CCEEEE-TT---EEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECT--TS
T ss_pred -EEEECC-CCcEEEE---EECCCCcccCceEE-CC---EEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcC--CC
Confidence 888886 5554432 22222222333333 44 57778889999999944887777765555556655532 44
Q ss_pred cEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccce
Q 001343 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN 588 (1096)
Q Consensus 509 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i 588 (1096)
.++.++.++.|..+|.. ++....+......+.++.+.+++...+.. +.|..+| .+++....+..... .+
T Consensus 149 -~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-------~~l~~~d-~~g~~~~~~~~~~~-~~ 217 (330)
T 3hxj_A 149 -TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-------DKVYAIN-PDGTEKWNFYAGYW-TV 217 (330)
T ss_dssp -CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-------SSEEEEC-TTSCEEEEECCSSC-CC
T ss_pred -EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-------CEEEEEC-CCCcEEEEEccCCc-ce
Confidence 47778888999999988 66666666666667778887888765543 5689999 77777766654433 56
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.++...+++ .+.+++.++.|..++. +++.+..+..... .+..+.+.+++ .|.+++.+|.|..+|. ++
T Consensus 218 ~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g 284 (330)
T 3hxj_A 218 TRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKR--IESSPVIGNTD-TIYFGSYDGHLYAINP-DG 284 (330)
T ss_dssp SCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSC--CCSCCEECTTS-CEEEECTTCEEEEECT-TS
T ss_pred eceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCC--ccccceEcCCC-eEEEecCCCCEEEECC-CC
Confidence 667777776 4666777888999985 5566655554332 34556666555 5667778888999986 45
No 244
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.86 E-value=1.4e-09 Score=120.65 Aligned_cols=188 Identities=11% Similarity=0.088 Sum_probs=106.9
Q ss_pred CCcEEEEec-CCeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccc
Q 001343 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKS 920 (1096)
Q Consensus 842 dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~ 920 (1096)
++..|++++ +|.|+.||..+|+.+.++.. +.+.+..+.. ++..+++++.||.|..||..+++ ..|.......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~-~~w~~~~~~~--- 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNE-GLTKLPFTIP--- 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----C-CSEECSCCHH---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCc-eeeeeeccCc---
Confidence 455666666 79999999999999988876 5566666667 77788888999999999999887 4444322100
Q ss_pred eeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcE
Q 001343 921 VTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 999 (1096)
Q Consensus 921 ~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i 999 (1096)
... .. . . .+..++ .+++ +.++.|..||..+|+.+-.+..+ . ...++|++..+++++.|+.|
T Consensus 81 ~~~---~~--s-p----~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~---~----~~~~~p~~~~v~~~~~dg~v 142 (369)
T 2hz6_A 81 ELV---QA--S-P----CRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSA---F----ADSLSPSTSLLYLGRTEYTI 142 (369)
T ss_dssp HHH---TT--C-S----CC------CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEE
T ss_pred ccc---cc--C-c----eEecCC-EEEEEeCCCEEEEEECCCCcEEEEecCC---C----cccccccCCEEEEEecCCEE
Confidence 000 00 0 1 111233 4555 78899999999999987665533 1 24556788999999999999
Q ss_pred EEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCC---ceEEEEeeCCcEEEEccCCCCCccccC
Q 001343 1000 GVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEP---NQFAIGLTDGSVKVMEPSESEGKWGVS 1069 (1096)
Q Consensus 1000 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~---~~l~s~~~dg~i~vW~v~~~~~~~~~~ 1069 (1096)
+.||..+|+.+....... + .+ .++.+ +. ..+++++.||.|+.||..+|+..|...
T Consensus 143 ~a~d~~tG~~~W~~~~~~--------~----~~--~~~~~-~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 143 TMYDTKTRELRWNATYFD--------Y----AA--SLPED-DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp ECCCSSSSSCCCEEEEEE--------E----CC--BCCCC-CTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EEEECCCCCEEEeEeccc--------c----cC--ccccC-CccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 999999998665443111 1 11 12222 21 567778899999999999999888765
No 245
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.83 E-value=7.3e-07 Score=97.00 Aligned_cols=232 Identities=8% Similarity=-0.016 Sum_probs=147.1
Q ss_pred cCCCcEEEEEEeCCCcEEEEE-cCC----ceEEEee------C-CCCCeEEEEeeecCCCcEEEEEECC------CeEEE
Q 001343 461 YPNKLLCVVTCGDDKLIKVWE-LSG----RKLFNFE------G-HEAPVYSICPHHKENIQFIFSTAID------GKIKA 522 (1096)
Q Consensus 461 ~d~~~~~l~s~s~d~~i~iwd-~~~----~~~~~~~------~-~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~i 522 (1096)
+++++ ++++|..++.|.++| .+. +...+++ . -...-..+...| +| +++++..+ |.|.+
T Consensus 93 ~~r~~-l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p--dG-i~Vs~~g~~~g~~~g~v~v 168 (462)
T 2ece_A 93 IERRF-LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP--DA-IYISALGNEEGEGPGGILM 168 (462)
T ss_dssp CCSCE-EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS--SC-EEEEEEEETTSCSCCEEEE
T ss_pred ccCCE-EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC--Ce-EEEEcCCCcCCCCCCeEEE
Confidence 77775 677888899999999 544 4445552 0 011223344434 66 66666555 78999
Q ss_pred EEcCCCCeeeEEeCCCC---cEEEEEEcCCCCEEEEEeec----------c-----CCCCeEEEEeCCCCeeeEEEcCc-
Q 001343 523 WLYDTMGSRVDYDAPGH---WCTTMLYSADGSRLFSCGTS----------K-----DGDSFLVEWNESEGTIKRTYAGF- 583 (1096)
Q Consensus 523 wd~~~~~~~~~~~~~~~---~i~~l~~s~~~~~l~~~~~~----------~-----~~~~~i~iwd~~~~~~~~~~~~~- 583 (1096)
.|..+.+.+..+..... --+.+.|+|+++.+++.... . .....|.+||+.+++.+.++...
T Consensus 169 lD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~ 248 (462)
T 2ece_A 169 LDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE 248 (462)
T ss_dssp ECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred EECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence 99999888877763322 23458889999988887410 0 12679999999999988888763
Q ss_pred CccceEEEEE--eCCCCEEEEEE------cCCeEEEEeCCCCeEE--EEeecCCC----------------CCCccEEEE
Q 001343 584 RKKSNGVVQF--DTTQNHFLAVG------EDSQIKFWDMDNVNIL--TSTDAEGG----------------LPNLPRLRF 637 (1096)
Q Consensus 584 ~~~~i~~~~~--~~~~~~l~~~~------~dg~i~iwd~~~~~~~--~~~~~~~~----------------~~~v~~~~~ 637 (1096)
.+.....+.| +|++++++++. .+++|.+|..+.+... +.+..... ......|.+
T Consensus 249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 2223334555 99999988877 4568888777655321 11111100 125789999
Q ss_pred eCCCCEEEEEEC-CCcEEEEEcCCCc--cccccccCCC---------cccccCcceeEEeecCCCeEEecC
Q 001343 638 SKEGNLLAVTTA-DNGFKILANAIGL--RSLRAVENPP---------FEALRTPIESVALKVSASSAVSSG 696 (1096)
Q Consensus 638 s~~~~~l~~~~~-dg~i~iwd~~~~~--~~~~~~~~~~---------~~~~~~~v~~~~~s~~g~~lv~~~ 696 (1096)
++||++|.++.. .+.|.+||+.+.. +....+.... ..........+.++|||+++..+.
T Consensus 329 S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 329 SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999988876 6889999986431 2222221110 001122356788888888874443
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.80 E-value=1.1e-05 Score=84.77 Aligned_cols=222 Identities=12% Similarity=0.029 Sum_probs=144.9
Q ss_pred CCEEEEEEcCCCCEEEEEE-CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCc
Q 001343 407 ISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 485 (1096)
..+..++|++++..|..+. .++.|.+++.+++.... .+.........+++.+++.. +.++....+.|.+++.++.
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 3578999999877666554 46899999997654321 12222356899999997663 4555666789999995554
Q ss_pred eEEEeeC-CCCCeEEEEeeecCCCcEEEEEEC---CCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccC
Q 001343 486 KLFNFEG-HEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1096)
Q Consensus 486 ~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~ 561 (1096)
....+.. .......+++.+. +..|+.+.. .+.|..++++.................+++++++..|+.+..
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~--~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~--- 186 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPV--RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--- 186 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETT--TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---
T ss_pred CEEEEEECCCCCccEEEEeeC--CCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---
Confidence 4333322 2245678888763 345554443 468888887644332222233346889999999888877654
Q ss_pred CCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCC
Q 001343 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 640 (1096)
+.+.|..+|.........+.+.. ....++.. +..++.+. ..+.|..+|..+++.+..+.... ......+++.|+
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~~~~--~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~ 261 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALS 261 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEECCC--SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECS
T ss_pred CCCEEEEEecCCCceEEEecCCC--CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCc
Confidence 36799999997655444444322 23445554 45555555 56899999999999888886432 124678888887
Q ss_pred CC
Q 001343 641 GN 642 (1096)
Q Consensus 641 ~~ 642 (1096)
+.
T Consensus 262 ~~ 263 (267)
T 1npe_A 262 QC 263 (267)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.71 E-value=3.6e-05 Score=80.79 Aligned_cols=258 Identities=12% Similarity=0.022 Sum_probs=154.5
Q ss_pred CEEEEEECCCeEEEEEccCCCccc--cceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEee-CCCC
Q 001343 419 NYVGVAFTKHLIQLYSYAGSNDLR--QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEA 495 (1096)
Q Consensus 419 ~~l~s~~~dg~i~vwd~~~~~~~~--~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~ 495 (1096)
.+|+.+.. +.|+.+++++..... ....+......+..++|++++.. ++++...++.|..++..+.....+. ....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 45555553 488889987654211 00012222346789999997764 5556666789999995554433332 2234
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1096)
....+++.+. ++.++++....+.|.+++++.................++++|++..|+.+... ...+.|..+++...
T Consensus 80 ~p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~-~~~~~I~~~~~dg~- 156 (267)
T 1npe_A 80 SPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN-RDNPKIETSHMDGT- 156 (267)
T ss_dssp CEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECC-SSSCEEEEEETTSC-
T ss_pred CccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECC-CCCcEEEEEecCCC-
Confidence 6788888663 23455555567899999987544333333333467899999987777665431 11367888887543
Q ss_pred eeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEE
Q 001343 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1096)
Q Consensus 576 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1096)
....+..........+++++++..|+.+. ..+.|.+++.............. ....++.. ++.++++....+.|.
T Consensus 157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~---~P~gi~~d-~~~lyva~~~~~~v~ 232 (267)
T 1npe_A 157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY-GKNLYYTDWKTNSVI 232 (267)
T ss_dssp CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE-TTEEEEEETTTTEEE
T ss_pred CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCC---CceEEEEe-CCEEEEEECCCCeEE
Confidence 33333211122567799999887776655 56799999997655444443221 34566664 344444444568899
Q ss_pred EEEcCCCccccccccCCCcccccCcceeEEeecCCC
Q 001343 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (1096)
Q Consensus 655 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 690 (1096)
.+|..++ +....+..... .....+++.|++.
T Consensus 233 ~~d~~~g-~~~~~i~~g~~----~~p~gi~~~~~~~ 263 (267)
T 1npe_A 233 AMDLAIS-KEMDTFHPHKQ----TRLYGITIALSQC 263 (267)
T ss_dssp EEETTTT-EEEEEECCSSC----CCCCCEEEECSCC
T ss_pred EEeCCCC-CceEEEccccc----cccceeeecCccC
Confidence 9999887 44444432110 1245677777764
No 248
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.66 E-value=2.7e-07 Score=104.15 Aligned_cols=279 Identities=11% Similarity=0.045 Sum_probs=175.9
Q ss_pred cEEEEEeCCCeEEEEecCCCCeeecccc------eeecccccCcccccc--------ccccC------CCCEEEEEEcC-
Q 001343 358 TLLLVGSSNGEITLWELAMRDRLVSKPF------KIWDMAACSLPFQAS--------IFKDV------PISVSRVAWSP- 416 (1096)
Q Consensus 358 ~llasg~~dg~I~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~--------~~~~h------~~~V~~l~~sp- 416 (1096)
|.+.||+..|.|+|+-+-+++.+....+ .-|-+...+..+... .+..+ .+.......|.
T Consensus 16 ~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t 95 (595)
T 1fwx_A 16 YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFT 95 (595)
T ss_dssp EEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEE
T ss_pred EEEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCC
Confidence 4577899999999999999998865221 112221111111100 01111 12233355555
Q ss_pred ----CCCEEEEEECC-CeEEEEEccCCCccccceeecccccCEEEEEE-e-cCCCcEEEEEEe-----------------
Q 001343 417 ----DGNYVGVAFTK-HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF-A-YPNKLLCVVTCG----------------- 472 (1096)
Q Consensus 417 ----d~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~-s-~d~~~~~l~s~s----------------- 472 (1096)
||++|.+...+ +.|.+.|+.+.++.+.+ ++. ....+..+++ + |+++ +++.++
T Consensus 96 ~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii-~ip-~g~~phg~~~~~~p~~~--~v~~~~~~~~p~~~dg~~l~~~~ 171 (595)
T 1fwx_A 96 EGKYDGRFLFMNDKANTRVARVRCDVMKCDAIL-EIP-NAKGIHGLRPQKWPRSN--YVFCNGEDETPLVNDGTNMEDVA 171 (595)
T ss_dssp TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEE-ECS-SCCSEEEEEECCSSBCS--EEEEEECSCEESSCSSSSTTCGG
T ss_pred CCCcCCCEEEEEcCCCCEEEEEECCCceEeeEE-eCC-CCCCCcceeeeecCCCc--EEEEecccccccCCCCccccccc
Confidence 89999887664 57999999998766633 232 2345888898 4 8999 555553
Q ss_pred -CCCcEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCC--------------------------------
Q 001343 473 -DDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG-------------------------------- 518 (1096)
Q Consensus 473 -~d~~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-------------------------------- 518 (1096)
.++.+.+.| .+.+.+.++.--. ....+++++ +|.++++.+.+.
T Consensus 172 ~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~sp--dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G 248 (595)
T 1fwx_A 172 NYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADY--EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 248 (595)
T ss_dssp GEEEEEEEEETTTTEEEEEEEESS-CCCCEEECS--SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCeEEEEEEeCC-CccceEECC--CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence 346899999 7777777765322 234455655 667887777543
Q ss_pred ------eEEEEEcCC--CCe-eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe------------ee
Q 001343 519 ------KIKAWLYDT--MGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT------------IK 577 (1096)
Q Consensus 519 ------~i~iwd~~~--~~~-~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~------------~~ 577 (1096)
.|.+.|..+ +.. ...+. .+....++.++|||+++++++. ....|.++|+.+.+ ..
T Consensus 249 k~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~---~s~~VsVid~~~~~~~~~~~l~~~~~v~ 324 (595)
T 1fwx_A 249 DYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGK---LSPTVTVLDVTRFDAVFYENADPRSAVV 324 (595)
T ss_dssp CSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECT---TSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred CeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCC---CCCeEEEEECcccccccccccCcccceE
Confidence 355666665 333 22222 1234567899999999998765 48899999998653 23
Q ss_pred EEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC----------CeEEEEeecCCC---CCCccEEEEeCCCCEE
Q 001343 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN----------VNILTSTDAEGG---LPNLPRLRFSKEGNLL 644 (1096)
Q Consensus 578 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~---~~~v~~~~~s~~~~~l 644 (1096)
..... +.....++|+++|...++.--|++|.+||+.. .+.+..+..+.. ...-..+.++|||++|
T Consensus 325 ~~v~v--G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l 402 (595)
T 1fwx_A 325 AEPEL--GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWL 402 (595)
T ss_dssp ECCBC--CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEE
T ss_pred EEcCC--CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEE
Confidence 33322 22456689999994334455799999999987 567777776532 1111334568999999
Q ss_pred EEEEC
Q 001343 645 AVTTA 649 (1096)
Q Consensus 645 ~~~~~ 649 (1096)
++...
T Consensus 403 ~~~Nk 407 (595)
T 1fwx_A 403 VCLSK 407 (595)
T ss_dssp EEEES
T ss_pred EEcCC
Confidence 98864
No 249
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.64 E-value=1.5e-06 Score=98.21 Aligned_cols=192 Identities=9% Similarity=0.021 Sum_probs=132.9
Q ss_pred CCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCC-CCCeEEEEeeecCCCcEEEEEE------------------CCCeEE
Q 001343 462 PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH-EAPVYSICPHHKENIQFIFSTA------------------IDGKIK 521 (1096)
Q Consensus 462 d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~------------------~dg~i~ 521 (1096)
||++ ++++...++.|.+.| .+.++...+.-. ......+++..-+++.++++++ .++.+.
T Consensus 100 DG~~-lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRF-LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEE-EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCE-EEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 8885 455566677899999 788877754322 2347777764224667888885 346799
Q ss_pred EEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCC----------------------------------CCeEE
Q 001343 522 AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG----------------------------------DSFLV 567 (1096)
Q Consensus 522 iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~----------------------------------~~~i~ 567 (1096)
+.|.++.+....+.... ....++++|+|+++++++.+... -+.|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99999887777766544 45678899999999988753211 12467
Q ss_pred EEeCCC--Cee-eEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCe------------EEEEeecCCCCCC
Q 001343 568 EWNESE--GTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN------------ILTSTDAEGGLPN 631 (1096)
Q Consensus 568 iwd~~~--~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~------------~~~~~~~~~~~~~ 631 (1096)
+.|..+ ++. +..+.... ...++.++|||+++++++ .+.+|.++|+.+.+ ....+.... .
T Consensus 258 VID~~~~~~~~~~~~Ipvg~--~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~---g 332 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL---G 332 (595)
T ss_dssp EEECSGGGCCSSEEEEEEES--SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS---C
T ss_pred EEeCcccCCceeEEEEecCC--CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC---C
Confidence 777776 444 44444322 344589999999888876 67899999998653 333333221 5
Q ss_pred ccEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 632 LPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 632 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
...++|+|+|....+...|+.|..||+..
T Consensus 333 P~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 333 PLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred cceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 78999999995555666799999999876
No 250
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.59 E-value=0.0015 Score=82.23 Aligned_cols=226 Identities=12% Similarity=0.063 Sum_probs=126.6
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCC------CcEEEEEEeC-CCcEEE
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN------KLLCVVTCGD-DKLIKV 479 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~------~~~~l~s~s~-d~~i~i 479 (1096)
..|.+.+.+ +.+++.++ ++.+.+++++.++. ..... ..-...|.|+++.+.+ + +++.|.. |++|+|
T Consensus 514 ~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L-~~~~~-~~l~~evscl~i~~~~~~~~~s~--~~aVg~~~d~tv~I 586 (1158)
T 3ei3_A 514 KNISVASCN--SSQVVVAV-GRALYYLQIHPQEL-RQISH-TEMEHEVACLDITPLGDSNGLSP--LCAIGLWTDISARI 586 (1158)
T ss_dssp CCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEE-EEEEE-EECSSCEEEEECCCCSSSTTCCS--EEEEEETTTTEEEE
T ss_pred CEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCce-eeecc-cCCCCceEEEEeecCCCCccccc--EEEEEECCCCEEEE
Confidence 356666654 34676665 67888888876532 21111 1235689999998642 4 7888886 999999
Q ss_pred EE-cCCceEEEeeC-CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC--Ceee--EEeCCCCcEEEEEEcCCCC-E
Q 001343 480 WE-LSGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM--GSRV--DYDAPGHWCTTMLYSADGS-R 552 (1096)
Q Consensus 480 wd-~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~--~~~~~~~~i~~l~~s~~~~-~ 552 (1096)
++ ...+.+....- ......++.+..-+...+|..|-.||.+..+.++.. ...- .......++.-..+...|. .
T Consensus 587 ~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~ 666 (1158)
T 3ei3_A 587 LKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTN 666 (1158)
T ss_dssp EETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEE
T ss_pred EECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCcee
Confidence 99 55554433221 123456666544334568999999999877766532 2211 1222233444444444443 3
Q ss_pred EEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCC--CCEEEEEEcCCeEEEEeCCCCe--EEEEeecCCC
Q 001343 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT--QNHFLAVGEDSQIKFWDMDNVN--ILTSTDAEGG 628 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~ 628 (1096)
+++++ +.-..++... ++....-... ........|+.. .+-++..+ ++.++|..++..+ .+..+....
T Consensus 667 V~a~s-----~rp~liy~~~-~~l~~s~l~~-~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~- 737 (1158)
T 3ei3_A 667 VFACS-----DRPTVIYSSN-HKLVFSNVNL-KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYE- 737 (1158)
T ss_dssp EEEES-----SSCEEEEESS-SSEEEEEBSS-SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSS-
T ss_pred EEEEC-----CCCEEEEEcC-CceEEeccCh-HHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCC-
Confidence 44443 3344444433 3332221111 112234456442 24455444 4569998876533 334444432
Q ss_pred CCCccEEEEeCCCCEEEEEECC
Q 001343 629 LPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 629 ~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
.+..++++|+.+.++.+..+
T Consensus 738 --Tprri~y~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 738 --SPRKICYQEVSQCFGVLSSR 757 (1158)
T ss_dssp --EEEEEEEEGGGTEEEEEEEE
T ss_pred --CceEEEEcCCCCEEEEEEEe
Confidence 68999999998888777654
No 251
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.59 E-value=1.2e-05 Score=96.17 Aligned_cols=284 Identities=13% Similarity=0.092 Sum_probs=173.1
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC-CCE-EEEEEcCCCCEEEEEECCCeEEEEEcc
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISV-SRVAWSPDGNYVGVAFTKHLIQLYSYA 436 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V-~~l~~spd~~~l~s~~~dg~i~vwd~~ 436 (1096)
.+++++.++.|.-+|..+|+.+-+.... ... . ...... ..+ ..+++ ++..|++++.|+.|..+|..
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~-------~~~-~--~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~ 135 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPE-------VAK-V--KARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAK 135 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCC-------CCG-G--GGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETT
T ss_pred EEEEECCCCeEEEEECCCChhceEECCC-------CCc-c--ccccccccCCccceEE--ECCEEEEEcCCCEEEEEECC
Confidence 3666778999999999999987442211 000 0 000000 000 01122 35678888899999999999
Q ss_pred CCCccccceeeccc--ccCEEEEEEecCCCcEEEEEEeC------CCcEEEEE-cCCceEEEeeCCC-CC----------
Q 001343 437 GSNDLRQHSQIDAH--VGAVNDLAFAYPNKLLCVVTCGD------DKLIKVWE-LSGRKLFNFEGHE-AP---------- 496 (1096)
Q Consensus 437 ~~~~~~~~~~l~~h--~~~v~~l~~s~d~~~~~l~s~s~------d~~i~iwd-~~~~~~~~~~~~~-~~---------- 496 (1096)
+|+.+-.... ... ...+.+--...++. ++.+.. ++.|..+| .+|+.+..+.... .+
T Consensus 136 tG~~~W~~~~-~~~~~~~~~~~~P~v~~~~---v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~ 211 (668)
T 1kv9_A 136 TGKAIWSQQT-TDPAKPYSITGAPRVVKGK---VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELR 211 (668)
T ss_dssp TCCEEEEEEC-SCTTSSCBCCSCCEEETTE---EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHH
T ss_pred CCCEeeeecc-CCCCCcceecCCCEEECCE---EEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccc
Confidence 9987654321 111 01111100111343 444432 58999999 8999988775311 00
Q ss_pred --------------------eEEEEeeecCCCcEEEEEECCCe-------------------EEEEEcCCCCeeeEEeCC
Q 001343 497 --------------------VYSICPHHKENIQFIFSTAIDGK-------------------IKAWLYDTMGSRVDYDAP 537 (1096)
Q Consensus 497 --------------------v~~~~~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~ 537 (1096)
...+++.+ +...++.++.++. |..+|.++++.+..+...
T Consensus 212 ~~~~~~~g~~~w~~~~gg~~w~~~a~d~--~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~ 289 (668)
T 1kv9_A 212 EAAKTWQGDQYWKLGGGGTVWDSMAYDP--ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT 289 (668)
T ss_dssp HHHTTCCSSCHHHHCEECCCCSCEEEET--TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS
T ss_pred cccccCCccceeeeCCCCccccceEEcC--CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC
Confidence 01244543 4467888877663 999999999998877653
Q ss_pred C---------CcEEEEEEcCCCC---EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC-----------ccc-------
Q 001343 538 G---------HWCTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-----------KKS------- 587 (1096)
Q Consensus 538 ~---------~~i~~l~~s~~~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-----------~~~------- 587 (1096)
. .+.....+..+|+ .++.+.. ++.++++|..+|+.+....... ..+
T Consensus 290 ~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~----~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~ 365 (668)
T 1kv9_A 290 PGDSWDFTATQQITLAELNIDGKPRKVLMQAPK----NGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVR 365 (668)
T ss_dssp TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCT----TSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTT
T ss_pred CCccccccCCCCcEEEEeccCCcEEEEEEEECC----CCEEEEEECCCCCEeccccccccccccccccccCCcccccccc
Confidence 2 1222223334665 4666654 8999999999999885433211 000
Q ss_pred -----------------eEEEEEeCCCCEEEEEE------------------------------------cCCeEEEEeC
Q 001343 588 -----------------NGVVQFDTTQNHFLAVG------------------------------------EDSQIKFWDM 614 (1096)
Q Consensus 588 -----------------i~~~~~~~~~~~l~~~~------------------------------------~dg~i~iwd~ 614 (1096)
...++++|+...+++.. .+|.|+.||.
T Consensus 366 ~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~ 445 (668)
T 1kv9_A 366 YEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDP 445 (668)
T ss_dssp CSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEET
T ss_pred ccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeC
Confidence 01256778776666521 2378999999
Q ss_pred CCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccc
Q 001343 615 DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAV 668 (1096)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 668 (1096)
.+++.+....... ......+...+.++++++.|+.++.||..++ +.+..+
T Consensus 446 ~tG~~~W~~~~~~---~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG-~~l~~~ 495 (668)
T 1kv9_A 446 VKQKAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKG-EALWQF 495 (668)
T ss_dssp TTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEE
T ss_pred CCCcEEEEccCCC---CCcCceeEeCCCEEEEECCcccchhhhhhcC-hhheEe
Confidence 9999988776543 2334455557889999999999999999999 444333
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.57 E-value=3.9e-06 Score=85.92 Aligned_cols=209 Identities=12% Similarity=-0.015 Sum_probs=137.0
Q ss_pred CeeeeeecCCCcEEEEec---CCeEEEEEcccceEEEeecCCC-CCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceee
Q 001343 833 AVPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELC 908 (1096)
Q Consensus 833 ~v~~l~~s~dg~~la~~~---dg~v~iwd~~~~~~~~~~~~h~-~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~ 908 (1096)
....++|++|+++.++.+ ++.|.++|+.+++.++++.-.. .....+++.. +++.++.-.++.+.++|..+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~~v~viD~~t~~-- 97 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--EKLYQVVWLKNIGFIYDRRTLS-- 97 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEETTCSEEEEEETTTTE--
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--CEEEEEEecCCEEEEEECCCCc--
Confidence 357899999887666554 3689999999999998875322 2233555543 4555566678999999999877
Q ss_pred eeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCCC--CCCCceEEEEee
Q 001343 909 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDA--LSAPISCAVYSC 985 (1096)
Q Consensus 909 ~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~i~~l~~s~ 985 (1096)
.+..+..... ....+++||+.|++ ..++.|.++|..+.+.+..+.-... .-..+..+.|.
T Consensus 98 -------------v~~~i~~g~~---~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 98 -------------NIKNFTHQMK---DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp -------------EEEEEECCSS---SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred -------------EEEEEECCCC---CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 1222211001 12346778887777 4578999999999888877763310 01235678887
Q ss_pred CCcEEEEEecCCcEEEEecCCCceeEEEccccccCCC-ccCCCccccceEEEecCCCC-ceEEEEeeCCcEEEEccCCCC
Q 001343 986 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPS-VLNGSQTVYPLVVAAHPLEP-NQFAIGLTDGSVKVMEPSESE 1063 (1096)
Q Consensus 986 dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~h~~~v~s~~l~~s~~d~-~~l~s~~~dg~i~vW~v~~~~ 1063 (1096)
+|++.+....++.|.+.|..+++....+......+.. ...+.....+..|+|+| ++ .+++++...+.|++-++...+
T Consensus 161 dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~-~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 161 NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ-ENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET-TTTEEEEEETTCSEEEEEEEEECC
T ss_pred CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcC-CCCEEEEECCCCCeEEEEEEeccc
Confidence 7876666667889999999999987777532211000 00011122334799999 65 466677788899999887654
No 253
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.56 E-value=1.2e-05 Score=82.37 Aligned_cols=205 Identities=8% Similarity=-0.038 Sum_probs=136.7
Q ss_pred cceEEeecCCCc--eEEEEEcCCCCcEEEEEeC--CCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEE
Q 001343 335 RTVAVSLHQGST--VISMDFHPSHQTLLLVGSS--NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (1096)
Q Consensus 335 ~~~~~~l~h~~~--V~~v~fsp~g~~llasg~~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (1096)
.+++.++.|... ...++|+|+|. ++++.+. ++.|.+.|+.+++.+.... +..+ ....
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~-----------------l~~~-~fge 69 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHK-----------------MDDS-YFGE 69 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEE-----------------CCTT-CCEE
T ss_pred ceEEEEEECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEe-----------------cCCC-cceE
Confidence 356777777754 68999999975 5555443 6899999999999876411 1111 1223
Q ss_pred EEEEcCCCCEEEEEE-CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEE
Q 001343 411 RVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1096)
Q Consensus 411 ~l~~spd~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~ 488 (1096)
.++++ ++.|..+. .++.+.++|..+.+.+..+. . + ... ...+++||+. ++.+..++.|.++| .+.+.+.
T Consensus 70 Gi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~-~-g-~~~--g~glt~Dg~~--l~vs~gs~~l~viD~~t~~v~~ 140 (266)
T 2iwa_A 70 GLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFT-H-Q-MKD--GWGLATDGKI--LYGSDGTSILYEIDPHTFKLIK 140 (266)
T ss_dssp EEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEE-C-C-SSS--CCEEEECSSS--EEEECSSSEEEEECTTTCCEEE
T ss_pred EEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEE-C-C-CCC--eEEEEECCCE--EEEECCCCeEEEEECCCCcEEE
Confidence 45554 55555544 57899999999987776432 1 2 111 2346668884 44445688999999 8888877
Q ss_pred EeeCCC-----CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC-------------CCcEEEEEEcCCC
Q 001343 489 NFEGHE-----APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------------GHWCTTMLYSADG 550 (1096)
Q Consensus 489 ~~~~~~-----~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~i~~l~~s~~~ 550 (1096)
.+.--. ..++.+.+. ++...+....++.|.+.|..+++....+... ......++++|++
T Consensus 141 ~I~Vg~~~~p~~~~nele~~---dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~ 217 (266)
T 2iwa_A 141 KHNVKYNGHRVIRLNELEYI---NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN 217 (266)
T ss_dssp EEECEETTEECCCEEEEEEE---TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT
T ss_pred EEEECCCCcccccceeEEEE---CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCC
Confidence 765321 135677765 4555555556889999999999887776542 1356899999999
Q ss_pred CEEEEEeeccCCCCeEEEEeCCC
Q 001343 551 SRLFSCGTSKDGDSFLVEWNESE 573 (1096)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~~ 573 (1096)
+.+++++. ....++..++..
T Consensus 218 ~~lfVTgk---~~~~v~~i~l~~ 237 (266)
T 2iwa_A 218 KRIFVTGK---LWPKLFEIKLHL 237 (266)
T ss_dssp TEEEEEET---TCSEEEEEEEEE
T ss_pred CEEEEECC---CCCeEEEEEEec
Confidence 88887764 256777766543
No 254
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.49 E-value=0.0076 Score=73.72 Aligned_cols=537 Identities=11% Similarity=0.056 Sum_probs=268.5
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
...|.++....+|. |-.|+.+ -+..||..+++.... .......|.++.. .+| .|..
T Consensus 62 ~~~i~~i~~d~~g~--lWigT~~-Gl~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY--LYMGTDN-GILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE--EEEEETT-EEEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc--EEEEeCC-CeEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEE
Confidence 35699998888886 4445554 578999876542210 0112235777754 344 5666
Q ss_pred EECCCeEEEEEccCCCccccceeec-ccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEeeCC------CC
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH------EA 495 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~l~-~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~~------~~ 495 (1096)
|+.+ -+..+|..+++......... -....|.++....++. +. .|+.+ -+..++ .+++ ...+... ..
T Consensus 118 gt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lW-igt~~-Gl~~~~~~~~~-~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQ--IY-VGTYN-GLCRYIPSNGK-FEGIPLPVHSSQSNL 191 (758)
T ss_dssp EETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCC--EE-EEETT-EEEEEETTTTE-EEEECCCCCTTCSSC
T ss_pred EcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCC--EE-EEeCC-CHhhCccCCCc-eEEecCCCccccccc
Confidence 6665 67788877654221000000 1234688888887777 33 35544 577888 4443 3332211 12
Q ss_pred CeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe
Q 001343 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1096)
.|.++... .++..|..|+. +-+..+|..+.............|.++....+|...+.. ++-+.+++..+++
T Consensus 192 ~i~~i~~d--~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT------~~Gl~~~~~~~~~ 262 (758)
T 3ott_A 192 FVNSLLED--TTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT------DNGLYVYHNDTTP 262 (758)
T ss_dssp CEEEEEEE--TTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE------TTEEEEECCTTSC
T ss_pred eeEEEEEE--CCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe------CCceeEEecCCCc
Confidence 37777653 34455555654 457778876544322212223458888888888766543 3458888887665
Q ss_pred eeEEEcC------cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEee---cCCCCCCccEEEEeCCCCEEEE
Q 001343 576 IKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD---AEGGLPNLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 576 ~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~ 646 (1096)
....... .....|.++....+|. |..|+..| +.++.....-...... .......|.++.-..+|.+.+.
T Consensus 263 ~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG 340 (758)
T 3ott_A 263 LQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG 340 (758)
T ss_dssp CEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE
T ss_pred EEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe
Confidence 4332211 1223577777777665 55666666 5554432211111111 0111225778887777776654
Q ss_pred EECCCcEEEEEcCCCcc-ccccccC--CCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccC
Q 001343 647 TTADNGFKILANAIGLR-SLRAVEN--PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSR 723 (1096)
Q Consensus 647 ~~~dg~i~iwd~~~~~~-~~~~~~~--~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s 723 (1096)
+.+| +..++..++.. ....+.. .........|.++.-..+|..-+++
T Consensus 341 -t~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt---------------------------- 390 (758)
T 3ott_A 341 -GANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT---------------------------- 390 (758)
T ss_dssp -ETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE----------------------------
T ss_pred -eCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe----------------------------
Confidence 4554 55565543211 1111110 0011112234445444444433222
Q ss_pred CCCCCccccCCCCCccceeeeeeecCCceEEEEcCCCC--CCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCC
Q 001343 724 SMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPEST--DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPS 801 (1096)
Q Consensus 724 ~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~ 801 (1096)
++-+..++.. ++.+..+...... .....|.++...++|. |-.++..+-+..++.........
T Consensus 391 -----------~~GL~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~ 454 (758)
T 3ott_A 391 -----------DGSINRYDYA----TRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTS 454 (758)
T ss_dssp -----------TTEEEEEETT----TTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCS
T ss_pred -----------CCcHhhcCcC----CCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEccccccccCC
Confidence 1334444433 2333332211100 0234688888878886 55555555566666421000000
Q ss_pred CceeeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEE-EecCCeEEEEEcccceEEEeecC---CCCCeeE
Q 001343 802 GKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM-SATGGKISLFNMMTFKVMTTFMS---PPPASTF 877 (1096)
Q Consensus 802 g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la-~~~dg~v~iwd~~~~~~~~~~~~---h~~~i~~ 877 (1096)
+.... ...+.. ...+ ....|.++...++|++-+ .+..+.|..+|..+++....... ....+.+
T Consensus 455 ~~~~~---~~~~~~------~~~l----~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~ 521 (758)
T 3ott_A 455 GQYIA---EQNYSV------HNGL----SGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNY 521 (758)
T ss_dssp SEEEC---SEEECG------GGTC----SCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEE
T ss_pred cceec---cccccc------cccc----ccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccce
Confidence 00000 000000 0011 234588999999998776 34556688899877655432211 1235777
Q ss_pred EEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEE
Q 001343 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIY 957 (1096)
Q Consensus 878 l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iw 957 (1096)
+.... +|++.+ |+..| +..++..++... ... ..+-....|.++... +|...+++ ++.|..+
T Consensus 522 i~~d~-~g~lWi-gt~~G-l~~~~~~~~~~~-------------~~~-~~gl~~~~i~~i~~~-~g~lWi~t-~~Gl~~~ 582 (758)
T 3ott_A 522 LLCDE-DGLLWV-GFHGG-VMRINPKDESQQ-------------SIS-FGSFSNNEILSMTCV-KNSIWVST-TNGLWII 582 (758)
T ss_dssp EEECT-TSCEEE-EETTE-EEEECC--CCCC-------------BCC-CCC---CCEEEEEEE-TTEEEEEE-SSCEEEE
T ss_pred EEECC-CCCEEE-EecCc-eEEEecCCCceE-------------Eec-ccCCCccceEEEEEC-CCCEEEEC-CCCeEEE
Confidence 87777 676554 45555 777777665400 000 011111256777664 66655544 5568888
Q ss_pred EcccceeccccccCCCCCCCceEEEEe-eCCcEEEEEecCCcEEEEecC
Q 001343 958 DASKMERIRQWTPQDALSAPISCAVYS-CNSQLVFATFCDGNIGVFDAD 1005 (1096)
Q Consensus 958 d~~~~~~~~~~~~~~~~~~~i~~l~~s-~dg~~la~~~~dg~i~vwd~~ 1005 (1096)
|..+.+...--.+ ...+....+. ++|.+++ |+.+|-+ .++.+
T Consensus 583 ~~~~~~~~~~~~~----~~~~~~~~~~~~~G~l~f-G~~~Gl~-~f~p~ 625 (758)
T 3ott_A 583 DRKTMDARQQNMT----NKRFTSLLFDPKEDCVYL-GGADGFG-ISHSN 625 (758)
T ss_dssp ETTTCCEEEC--C----CCCCSEEEEETTTTEEEE-ECBSEEE-EEEC-
T ss_pred cCCCceeEEecCC----CCceeeeEEECCCCcEEE-ecCCceE-EEChh
Confidence 9887664321111 2233444443 4666555 7777754 45544
No 255
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.49 E-value=0.0001 Score=85.95 Aligned_cols=112 Identities=8% Similarity=-0.015 Sum_probs=73.0
Q ss_pred cEEEEEEC-CCeEEEEEc-CCCCeeeEEeCCCCc-----------EEEEEEcCCCCE----EEEEeeccCCCCeEEEEeC
Q 001343 509 QFIFSTAI-DGKIKAWLY-DTMGSRVDYDAPGHW-----------CTTMLYSADGSR----LFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 509 ~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~~-----------i~~l~~s~~~~~----l~~~~~~~~~~~~i~iwd~ 571 (1096)
..+++++. ++.|..+|. .+++.+..+...... ...++++|.+.. +++++. ++.|+.+|.
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~----dg~l~AlDa 138 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL----DGNVAALNA 138 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT----TSEEEEEET
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC----CCEEEEEEC
Confidence 36667776 888888998 888888776554321 123455443433 666654 889999999
Q ss_pred CCCeeeEEEcCcCcc---ceE-EEEEeCCCCEEEEEE------cCCeEEEEeCCCCeEEEEeecC
Q 001343 572 SEGTIKRTYAGFRKK---SNG-VVQFDTTQNHFLAVG------EDSQIKFWDMDNVNILTSTDAE 626 (1096)
Q Consensus 572 ~~~~~~~~~~~~~~~---~i~-~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~ 626 (1096)
.+|+.+-........ .+. .-.+. +..+++++ .+|.|+.+|..+|+.+..+...
T Consensus 139 ~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 139 ETGETVWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp TTCCEEEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred CCCCEEEeecCCCCCccceeecCCEEE--CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 999988776543210 111 11111 34566655 3799999999999998877643
No 256
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.49 E-value=0.0077 Score=73.68 Aligned_cols=538 Identities=11% Similarity=0.086 Sum_probs=273.6
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
...|.|+.-..+|. +=.|+.+| +..||-.+-+... .. -......|.++.-..+| .|.+
T Consensus 21 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~~~~~~--------~~----------~~~~~~~i~~i~~d~~g-~lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGL--IWIGSNKG-LFSYDGYSTQQHF--------TY----------GENNNTRIYCGVIIDNT-YLYM 78 (758)
T ss_dssp CCCEEEEEECTTSC--EEEEESSC-EEEECSSCEEECS--------CT----------TSTTSSCEEEEEEETTT-EEEE
T ss_pred cceEEEEEECCCCC--EEEEECCC-ccccCCCceEEEE--------cc----------CCCCCceEEEEEEcCCC-cEEE
Confidence 45799999999997 33455666 5566632211000 00 01124569998887776 5555
Q ss_pred EECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEEee-----CCCCCe
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-----GHEAPV 497 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~-----~~~~~v 497 (1096)
|+.+| +..||..+.+.... .......|.++.. .++. |..++.+ -+..+| .+++ +..+. .....|
T Consensus 79 gT~~G-l~~yd~~~~~f~~~---~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~-~~~~~~~~~~l~~~~i 148 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQP---ETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRK-LTSFDTRRNGLPNNTI 148 (758)
T ss_dssp EETTE-EEEEETTTTEECCC---SCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCC-EEEECHHHHCCSCSCE
T ss_pred EeCCC-eEEEeCCCCEEECc---ccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCe-EEEeccCCCCcCCCeE
Confidence 66655 77899876532211 1112345777754 3553 4445555 678889 4444 33331 123457
Q ss_pred EEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC------CCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC
Q 001343 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1096)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~ 571 (1096)
.++.. +.++. |..|+.+| +..++..+..... +... ...|.++...+++..|..++ ++-+..+|.
T Consensus 149 ~~i~~--d~~g~-lWigt~~G-l~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt-----~~Gl~~~~~ 218 (758)
T 3ott_A 149 YSIIR--TKDNQ-IYVGTYNG-LCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGT-----EGYLFQYFP 218 (758)
T ss_dssp EEEEE--CTTCC-EEEEETTE-EEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEE-----EEEEEEEET
T ss_pred EEEEE--cCCCC-EEEEeCCC-HhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEE-----CCCCeEEcC
Confidence 77765 33444 44455554 6667765543221 1111 22488888887777666555 235888898
Q ss_pred CCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCC-----CCCCccEEEEeCCCCEEEE
Q 001343 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-----GLPNLPRLRFSKEGNLLAV 646 (1096)
Q Consensus 572 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~ 646 (1096)
.+++.... .......|.++....+|.. ..|+. +-+.+++..++.......... ....|.++....+|.+.+
T Consensus 219 ~~~~~~~~-~~l~~~~i~~i~~d~~g~l-WigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi- 294 (758)
T 3ott_A 219 STGQIKQT-EAFHNNSIKSLALDGNGDL-LAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL- 294 (758)
T ss_dssp TTTEEEEE-EEEEEEEEEEEEECTTCCE-EEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-
T ss_pred CCCeEEec-cCCCCCeEEEEEEcCCCCE-EEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-
Confidence 77654332 2112225777777777654 44554 468889887765433221110 122578888877776554
Q ss_pred EECCCcEEEEEcCCCccccccccCCCcccccCcceeEEeecCCCeEEecCCCCceeEeccCCCcCCCcccCCCCccCCCC
Q 001343 647 TTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMD 726 (1096)
Q Consensus 647 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~ 726 (1096)
|+..| +.++......+... ............|.++....+|..-+.+. .+...
T Consensus 295 GT~~G-l~~~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~D~~g~lWiGt~-~Gl~~------------------------ 347 (758)
T 3ott_A 295 GTDYG-ISLSRYNSALQFIP-ISQITGTGDGNQFYSLFRDSKGFYWFGGA-NGLIR------------------------ 347 (758)
T ss_dssp EESSS-EEEECCCC-CEEEE-HHHHSCSCCCCBEEEEEECTTCCEEEEET-TEEEE------------------------
T ss_pred EeCCc-ccccccCCceeEEe-cccCCCCCCCceEEEEEEcCCCCEEEeeC-Cccee------------------------
Confidence 44556 54443221111110 00000001112355566666666554432 12111
Q ss_pred CCccccCCCCCccceeeeeeecCCceEEEEcCC--CCCCcccEEEEEEecCCceEEEeecCCeEEEeeccCCccCCCCce
Q 001343 727 KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPE--STDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKA 804 (1096)
Q Consensus 727 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~ 804 (1096)
++.... .......+.... .......|.++.-..+|...+ ++ ++-+..|+.....+
T Consensus 348 --------------~~~~~~-~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~------ 404 (758)
T 3ott_A 348 --------------FTDPAG-ERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQF------ 404 (758)
T ss_dssp --------------ESCTTS-SCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEE------
T ss_pred --------------eccccc-ccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcE------
Confidence 111000 000011111000 001234688888888887444 44 44677776532111
Q ss_pred eeecCccccccCccccccccccCCCcCCCeeeeeecCCCcEEEEecCCeEEEEEcccc-----eEE---Eeec---C-CC
Q 001343 805 TASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTF-----KVM---TTFM---S-PP 872 (1096)
Q Consensus 805 ~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~-----~~~---~~~~---~-h~ 872 (1096)
..+....... .+ ....|.++...++|++.+....+.|.++|..+. ... ..+. + ..
T Consensus 405 ------~~~~~~~~~~---~~----~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 471 (758)
T 3ott_A 405 ------IHYNIVDNTG---TY----NTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSG 471 (758)
T ss_dssp ------EEEEEECCC-----C----BSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSC
T ss_pred ------EEeecCCCcC---CC----CCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccccc
Confidence 0010000000 00 234688888888887766444567888886431 111 1111 1 22
Q ss_pred CCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCCCC-CCCCceEEEecCCcEEEEEec
Q 001343 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKT-PTGDTRVQFNADQVRMLVVHE 951 (1096)
Q Consensus 873 ~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~v~~v~fs~dg~~l~~~~d 951 (1096)
..|.++...+ ++++.+.++..+-|..+|..+++... +. ..+.. ...+.++....+|...+.+.
T Consensus 472 ~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~-------------~~-~~~~~~~~~~~~i~~d~~g~lWigt~- 535 (758)
T 3ott_A 472 MFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTK-------------LF-ADELTGEKSPNYLLCDEDGLLWVGFH- 535 (758)
T ss_dssp SCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEE-------------EC-TTTSCGGGCEEEEEECTTSCEEEEET-
T ss_pred ceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEE-------------ec-CCCcCCCcccceEEECCCCCEEEEec-
Confidence 3588898888 78776633333447778877665110 10 00000 01566777778887776654
Q ss_pred ceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCcee
Q 001343 952 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLR 1010 (1096)
Q Consensus 952 ~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~ 1010 (1096)
+.|..|+..+++....-..+- -...|.++.. .+|.+.+ ++.+| +..+|..+.+..
T Consensus 536 ~Gl~~~~~~~~~~~~~~~~gl-~~~~i~~i~~-~~g~lWi-~t~~G-l~~~~~~~~~~~ 590 (758)
T 3ott_A 536 GGVMRINPKDESQQSISFGSF-SNNEILSMTC-VKNSIWV-STTNG-LWIIDRKTMDAR 590 (758)
T ss_dssp TEEEEECC--CCCCBCCCCC----CCEEEEEE-ETTEEEE-EESSC-EEEEETTTCCEE
T ss_pred CceEEEecCCCceEEecccCC-CccceEEEEE-CCCCEEE-ECCCC-eEEEcCCCceeE
Confidence 568888887665322111110 0456777775 4665554 55555 777898877643
No 257
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.48 E-value=0.00015 Score=84.84 Aligned_cols=172 Identities=6% Similarity=-0.027 Sum_probs=108.4
Q ss_pred eeeecCCCcEEEEec-C----------------CeEEEEEcccceEEEeecC--CC--------CCeeEEEEecCCC---
Q 001343 836 CIALSKNDSYVMSAT-G----------------GKISLFNMMTFKVMTTFMS--PP--------PASTFLAFHPQDN--- 885 (1096)
Q Consensus 836 ~l~~s~dg~~la~~~-d----------------g~v~iwd~~~~~~~~~~~~--h~--------~~i~~l~~s~~d~--- 885 (1096)
.+++.++...+..+. + +.|..+|..+|+.+..++. |. .++ -+.... ++
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~-~G~~~ 316 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPV-NGKMT 316 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEE-TTEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEeccc-CCcEE
Confidence 456666655555544 1 3599999999998877652 21 111 123334 56
Q ss_pred cEEEEeeCCCeEEEEeeccceeeeeecccccc---------ccceeeec--------------CCCCCC-CCCceEEEec
Q 001343 886 NIIAIGTEDSTIHIYNVRVDELCVWSIDTWEK---------RKSVTIHI--------------PAGKTP-TGDTRVQFNA 941 (1096)
Q Consensus 886 ~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~---------~~~~~~~~--------------~~~~~~-~~v~~v~fs~ 941 (1096)
+.++.++.+|.+.++|..+++ .+|....... ...+++.. ..+... ..-..++|+|
T Consensus 317 ~~v~~~~~~G~l~~lD~~tG~-~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 395 (571)
T 2ad6_A 317 PLLSHIDRNGILYTLNRENGN-LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP 395 (571)
T ss_dssp EEEEEECTTSEEEEEETTTCC-EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEeCCCcEEEEEECCCCC-EEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECC
Confidence 367889999999999999998 6776543210 11111110 000000 1124678898
Q ss_pred CCcEEEE-Ee-------------------------------------cceEEEEEcccceeccccccCCCCCCCceEEEE
Q 001343 942 DQVRMLV-VH-------------------------------------ETQLAIYDASKMERIRQWTPQDALSAPISCAVY 983 (1096)
Q Consensus 942 dg~~l~~-~~-------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~ 983 (1096)
+...+++ .. ++.|..||+.+|+.+-+.... ..+.+..+
T Consensus 396 ~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~----~~~~~~~~ 471 (571)
T 2ad6_A 396 ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK----FAAWGGTL 471 (571)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES----SCCCSBCE
T ss_pred CCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC----CCccceeE
Confidence 8877776 32 368999999999876555432 22333334
Q ss_pred eeCCcEEEEEecCCcEEEEecCCCceeEEEc
Q 001343 984 SCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1014 (1096)
Q Consensus 984 s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~ 1014 (1096)
...+.++++++.||.|++||..+|+.+..+.
T Consensus 472 ~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 472 YTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 4556777789999999999999999877655
No 258
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.47 E-value=1.6e-05 Score=80.03 Aligned_cols=190 Identities=9% Similarity=0.016 Sum_probs=127.6
Q ss_pred ceEEeecCCCc--eEEEEEcCCCCcEEEEEeCCC--eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEE
Q 001343 336 TVAVSLHQGST--VISMDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1096)
Q Consensus 336 ~~~~~l~h~~~--V~~v~fsp~g~~llasg~~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1096)
+++.++.|... ...+.|+ ++. ++.+.+.+| .|+++|+.+++.+.+.. + ......
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~~-LyestG~~g~S~v~~vD~~Tgkv~~~~~-----------------l---~~~~Fg 89 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NGY-FYESTGLNGRSSIRKVDIESGKTLQQIE-----------------L---GKRYFG 89 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TTE-EEEEEEETTEEEEEEECTTTCCEEEEEE-----------------C---CTTCCE
T ss_pred EEEEEecCCCCcccceEEEE-CCE-EEEECCCCCCceEEEEECCCCcEEEEEe-----------------c---CCccce
Confidence 45666777654 4899999 665 677777766 99999999999886421 1 112223
Q ss_pred EEEcCCCCEEEEEE-CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceEEE
Q 001343 412 VAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1096)
Q Consensus 412 l~~spd~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~ 489 (1096)
....++++.|.... .++.+.+||.++.+.+..+. ..+ ....+++|++ .|+.+..++.|.++| .+.+.+.+
T Consensus 90 eGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~-~~~-----eG~glt~dg~--~L~~SdGs~~i~~iDp~T~~v~~~ 161 (262)
T 3nol_A 90 EGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFN-YDG-----EGWGLTHNDQ--YLIMSDGTPVLRFLDPESLTPVRT 161 (262)
T ss_dssp EEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEE-CSS-----CCCCEEECSS--CEEECCSSSEEEEECTTTCSEEEE
T ss_pred eEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEE-CCC-----CceEEecCCC--EEEEECCCCeEEEEcCCCCeEEEE
Confidence 22333455555554 57899999999988777432 222 2233446777 455555578899999 88888877
Q ss_pred eeCC--C---CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCC------------CCcEEEEEEcCCCCE
Q 001343 490 FEGH--E---APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------------GHWCTTMLYSADGSR 552 (1096)
Q Consensus 490 ~~~~--~---~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------~~~i~~l~~s~~~~~ 552 (1096)
+.-. . ..++.+.+. +|...+..-.+..|.+.|..+++....+... ....+.++++|+++.
T Consensus 162 I~V~~~g~~~~~lNELe~~---~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~ 238 (262)
T 3nol_A 162 ITVTAHGEELPELNELEWV---DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHR 238 (262)
T ss_dssp EECEETTEECCCEEEEEEE---TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTE
T ss_pred EEeccCCccccccceeEEE---CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCE
Confidence 6542 1 234556664 5555555556889999999999888766543 235689999999998
Q ss_pred EEEEee
Q 001343 553 LFSCGT 558 (1096)
Q Consensus 553 l~~~~~ 558 (1096)
|++.+.
T Consensus 239 lfVTGK 244 (262)
T 3nol_A 239 LFVTGK 244 (262)
T ss_dssp EEEEET
T ss_pred EEEECC
Confidence 888874
No 259
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.43 E-value=3.3e-05 Score=92.50 Aligned_cols=262 Identities=8% Similarity=0.029 Sum_probs=162.4
Q ss_pred EEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEEC------CCeEEE
Q 001343 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT------KHLIQL 432 (1096)
Q Consensus 359 llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~------dg~i~v 432 (1096)
.+++++.|+.|..+|..+|+.+-+ ........ .......++. .+..++++.. +|.|..
T Consensus 119 ~v~v~~~dg~l~alD~~tG~~~W~-------~~~~~~~~---~~~~~~~P~v------~~~~v~vg~~~~~~~~~g~v~a 182 (668)
T 1kv9_A 119 KVYVGTLDGRLIALDAKTGKAIWS-------QQTTDPAK---PYSITGAPRV------VKGKVIIGNGGAEYGVRGFVSA 182 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEE-------EECSCTTS---SCBCCSCCEE------ETTEEEECCBCTTTCCBCEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEeee-------eccCCCCC---cceecCCCEE------ECCEEEEeCCCCCcCCCCEEEE
Confidence 467788899999999999998743 11100000 0000111211 1334544432 589999
Q ss_pred EEccCCCccccceeecc----------------------------cccCEEEEEEecCCCcEEEEEEeCCC---------
Q 001343 433 YSYAGSNDLRQHSQIDA----------------------------HVGAVNDLAFAYPNKLLCVVTCGDDK--------- 475 (1096)
Q Consensus 433 wd~~~~~~~~~~~~l~~----------------------------h~~~v~~l~~s~d~~~~~l~s~s~d~--------- 475 (1096)
+|..+|+.+-......+ +......+++.++.. .++.++.++
T Consensus 183 ~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~--~vy~~~~~g~~w~~~~~~ 260 (668)
T 1kv9_A 183 YDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD--LLYVGTGNGSPWNREVRS 260 (668)
T ss_dssp EETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT--EEEEECCCEESSCHHHHS
T ss_pred EECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC--EEEEeCCCCCccccCCCC
Confidence 99999987654321111 111123478888877 677777665
Q ss_pred ----------cEEEEE-cCCceEEEeeC--CC-------CCeEEEEeeecCCCc---EEEEEECCCeEEEEEcCCCCeee
Q 001343 476 ----------LIKVWE-LSGRKLFNFEG--HE-------APVYSICPHHKENIQ---FIFSTAIDGKIKAWLYDTMGSRV 532 (1096)
Q Consensus 476 ----------~i~iwd-~~~~~~~~~~~--~~-------~~v~~~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~ 532 (1096)
.|..+| .+|+.+..++. |. .+.....+.. +|+ .++.++.+|.+.++|..+++.+.
T Consensus 261 ~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~--~G~~~~~v~~~~~~G~l~~lD~~tG~~l~ 338 (668)
T 1kv9_A 261 PGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI--DGKPRKVLMQAPKNGFFYVLDRTNGKLIS 338 (668)
T ss_dssp TTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--TTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred CCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc--CCcEEEEEEEECCCCEEEEEECCCCCEec
Confidence 499999 99999888764 22 2222222222 343 68899999999999999988774
Q ss_pred EEeCCC------------CcE------------------------EEEEEcCCCCEEEEEeec-----------------
Q 001343 533 DYDAPG------------HWC------------------------TTMLYSADGSRLFSCGTS----------------- 559 (1096)
Q Consensus 533 ~~~~~~------------~~i------------------------~~l~~s~~~~~l~~~~~~----------------- 559 (1096)
...... .++ ..++++|+...+++....
T Consensus 339 ~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~ 418 (668)
T 1kv9_A 339 AEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKA 418 (668)
T ss_dssp EEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSS
T ss_pred cccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccc
Confidence 332211 001 126778877776653210
Q ss_pred ---------------cCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEee
Q 001343 560 ---------------KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1096)
Q Consensus 560 ---------------~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1096)
...++.|..||+.+++.+-....... .....+...+..+++++.|+.++.||.++++.+..+.
T Consensus 419 ~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~--~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 419 FNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH--WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp CCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS--CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCC--CcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence 01137899999999999877664332 2223344567889999999999999999999998887
Q ss_pred cCCCCCCccEEEEeCCCCE
Q 001343 625 AEGGLPNLPRLRFSKEGNL 643 (1096)
Q Consensus 625 ~~~~~~~v~~~~~s~~~~~ 643 (1096)
..... ...-+.+..+|+.
T Consensus 497 ~~~~~-~~~p~~~~~~G~~ 514 (668)
T 1kv9_A 497 AQSGI-VAAPMTFELAGRQ 514 (668)
T ss_dssp CSSCC-CSCCEEEEETTEE
T ss_pred CCCCc-ccCceEEEECCEE
Confidence 65432 2234555556653
No 260
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.42 E-value=7.6e-05 Score=87.02 Aligned_cols=308 Identities=12% Similarity=0.038 Sum_probs=177.1
Q ss_pred EEEEeC-CCeEEEEec-CCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCE----EEEEECCCeEEEE
Q 001343 360 LLVGSS-NGEITLWEL-AMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY----VGVAFTKHLIQLY 433 (1096)
Q Consensus 360 lasg~~-dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~----l~s~~~dg~i~vw 433 (1096)
+.+++. ++.|.-+|. .+|+.+-+..... ..........+ .....++++|.+.. |++++.|+.|.-+
T Consensus 65 vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~-------~~~~~~~~~~~-~~~~g~av~p~~g~~~~rV~v~t~dg~l~Al 136 (599)
T 1w6s_A 65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQ-------NPAARAVACCD-LVNRGLAYWPGDGKTPALILKTQLDGNVAAL 136 (599)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCC-------CGGGGGGCSSC-SCCCCCEEECCCSSSCCEEEEECTTSEEEEE
T ss_pred EEEEeCCCCEEEEEeCCCCCcEEEEECCCC-------Ccccccccccc-ccccceEEEecCCcceeEEEEEcCCCEEEEE
Confidence 555666 889999999 8998774422110 00000000000 00112445444444 7888889999999
Q ss_pred EccCCCccccceeecccc--cCEEE-EEEecCCCcEEEEEEe------CCCcEEEEE-cCCceEEEeeCCCCC-------
Q 001343 434 SYAGSNDLRQHSQIDAHV--GAVND-LAFAYPNKLLCVVTCG------DDKLIKVWE-LSGRKLFNFEGHEAP------- 496 (1096)
Q Consensus 434 d~~~~~~~~~~~~l~~h~--~~v~~-l~~s~d~~~~~l~s~s------~d~~i~iwd-~~~~~~~~~~~~~~~------- 496 (1096)
|..+|+.+-... +..+. ..+.+ ... .++. ++.++ .++.|+.+| .+|+.+..+......
T Consensus 137 Da~TG~~~W~~~-~~~~~~~~~~~ssP~v-~~g~---V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p 211 (599)
T 1w6s_A 137 NAETGETVWKVE-NSDIKVGSTLTIAPYV-VKDK---VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLAS 211 (599)
T ss_dssp ETTTCCEEEEEE-CCCGGGTCBCCSCCEE-ETTE---EEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCT
T ss_pred ECCCCCEEEeec-CCCCCccceeecCCEE-ECCE---EEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccc
Confidence 999998764321 21111 01111 111 2443 44444 389999999 899998776532211
Q ss_pred ------------------------------eE-EEEeeecCCCcEEEEEECC----------------CeEEEEEcCCCC
Q 001343 497 ------------------------------VY-SICPHHKENIQFIFSTAID----------------GKIKAWLYDTMG 529 (1096)
Q Consensus 497 ------------------------------v~-~~~~~~~~~~~~l~s~~~d----------------g~i~iwd~~~~~ 529 (1096)
++ .+++.+ +..+++.+..+ +.|..+|.++++
T Consensus 212 ~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~--~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~ 289 (599)
T 1w6s_A 212 DFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP--GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE 289 (599)
T ss_dssp TTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET--TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC
T ss_pred ccccccccccccccccccCCCcceecCCCccccceeEeC--CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc
Confidence 00 122322 34567776655 489999999999
Q ss_pred eeeEEeCCCCc---------EEEEEEc-CCCC---EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC------------
Q 001343 530 SRVDYDAPGHW---------CTTMLYS-ADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR------------ 584 (1096)
Q Consensus 530 ~~~~~~~~~~~---------i~~l~~s-~~~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~------------ 584 (1096)
.+..+....+. ..-+... .+|+ .++.++. ++.++++|..+|+.+.......
T Consensus 290 ~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~----~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~ 365 (599)
T 1w6s_A 290 AKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDR----NGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKT 365 (599)
T ss_dssp EEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECT----TSEEEEEETTTCCEEEEEESSTTCCSEEEECTTT
T ss_pred eeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECC----CcEEEEEECCCCCEeecccccCCcccccccccCC
Confidence 88877654321 1112222 5673 4555554 8999999999999887654211
Q ss_pred ccce--------------------------EEEEEeCCCCEEEEEE----------------------------------
Q 001343 585 KKSN--------------------------GVVQFDTTQNHFLAVG---------------------------------- 604 (1096)
Q Consensus 585 ~~~i--------------------------~~~~~~~~~~~l~~~~---------------------------------- 604 (1096)
..++ ..++++|+...+++..
T Consensus 366 g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~ 445 (599)
T 1w6s_A 366 GQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGD 445 (599)
T ss_dssp CCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSB
T ss_pred CceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCC
Confidence 0011 1356677666655421
Q ss_pred -----cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCc
Q 001343 605 -----EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTP 679 (1096)
Q Consensus 605 -----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 679 (1096)
..|.|..||+.+++.+....... ....-.....+.+++.++.|+.++.||..++. .+-.++.... ..
T Consensus 446 ~~~~~~~G~l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~-~lW~~~l~~g-~~--- 517 (599)
T 1w6s_A 446 RQNYEGLGQIKAYNAITGDYKWEKMERF---AVWGGTMATAGDLVFYGTLDGYLKARDSDTGD-LLWKFKIPSG-AI--- 517 (599)
T ss_dssp TTTTBCCEEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCC-EEEEEECSSC-CC---
T ss_pred cccCCCcCeEEEEECCCCCEEeEecCCC---CccCcceEecCCEEEEECCCCeEEEEECCCCC-EEEEeeCCCC-cE---
Confidence 34789999999999888775432 12221223356788889999999999999994 3333332211 11
Q ss_pred ceeEEeecCCCeEEe
Q 001343 680 IESVALKVSASSAVS 694 (1096)
Q Consensus 680 v~~~~~s~~g~~lv~ 694 (1096)
..-+.+..+|+..++
T Consensus 518 ~~P~~y~~~G~qyv~ 532 (599)
T 1w6s_A 518 GYPMTYTHKGTQYVA 532 (599)
T ss_dssp SCCEEEEETTEEEEE
T ss_pred eccEEEEeCCEEEEE
Confidence 122556677775533
No 261
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.41 E-value=2.9e-05 Score=78.25 Aligned_cols=184 Identities=15% Similarity=0.094 Sum_probs=127.8
Q ss_pred EEEEEEecCCCcEEEEEEeCCC--cEEEEE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCe
Q 001343 454 VNDLAFAYPNKLLCVVTCGDDK--LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS 530 (1096)
Q Consensus 454 v~~l~~s~d~~~~~l~s~s~d~--~i~iwd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 530 (1096)
...+.|+ ++. +.++.+.+| .|+++| .+|+.+..+.... ......+.+.++ .+.+..-.++.+.+||..+.+.
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~-~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKD-KIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETT-EEEEEESSSSEEEEEETTTCCE
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCC-EEEEEEeeCCEEEEEECccCcE
Confidence 4788998 565 677777766 999999 9999988876433 333322223332 4444555689999999999999
Q ss_pred eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC-c---cceEEEEEeCCCCEEEEEEcC
Q 001343 531 RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-K---KSNGVVQFDTTQNHFLAVGED 606 (1096)
Q Consensus 531 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~---~~i~~~~~~~~~~~l~~~~~d 606 (1096)
+..+...... ..+++|++.|+... +...|.++|..+.+.+.++.... + ..++.+.+. +|..++..-.+
T Consensus 120 ~~ti~~~~eG---~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~ 191 (262)
T 3nol_A 120 VRSFNYDGEG---WGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQT 191 (262)
T ss_dssp EEEEECSSCC---CCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred EEEEECCCCc---eEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccC
Confidence 8887764421 23336777777653 27789999999999988876532 1 123446665 56544444468
Q ss_pred CeEEEEeCCCCeEEEEeecCCC----------CCCccEEEEeCCCCEEEEEECC
Q 001343 607 SQIKFWDMDNVNILTSTDAEGG----------LPNLPRLRFSKEGNLLAVTTAD 650 (1096)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~d 650 (1096)
+.|.+.|..+++.+..+....- ....+.|+|+|+++.|++.+..
T Consensus 192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 8999999999999998876421 1245899999998888877754
No 262
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.40 E-value=3.7e-05 Score=93.70 Aligned_cols=245 Identities=9% Similarity=0.007 Sum_probs=131.4
Q ss_pred ceEEEEEc-CCCCcEEEEEeCCC----eEEEEecCCC-CeeecccceeecccccCccccccccccCCCCEEEEEEcCCCC
Q 001343 346 TVISMDFH-PSHQTLLLVGSSNG----EITLWELAMR-DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1096)
Q Consensus 346 ~V~~v~fs-p~g~~llasg~~dg----~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~ 419 (1096)
.+...+|| |||++++.+.+.+| .|+++|+.++ +.+.. . +. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence 68899999 99995444444443 5999999988 63211 0 11 1134689999999
Q ss_pred EEEEEECC-----CeEEEEEccCCCccccceeec-ccccCEEEEEEecCCCcEEEEEEe---CCCcEEEEE-cCC--ce-
Q 001343 420 YVGVAFTK-----HLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCG---DDKLIKVWE-LSG--RK- 486 (1096)
Q Consensus 420 ~l~s~~~d-----g~i~vwd~~~~~~~~~~~~l~-~h~~~v~~l~~s~d~~~~~l~s~s---~d~~i~iwd-~~~--~~- 486 (1096)
.|+....+ ..|.++++.++...... .+. ........+.|+|||+. |+..+ ....|+++| .++ ..
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~l~~~d~~~~~~~~~ 310 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNT--LCIGSQSPETAEVHLLDLRKGNAHNT 310 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSE--EEEEEECSSCEEEEEEESSSCTTCCC
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCE--EEEEecCCCCceEEEEECCCCCCCce
Confidence 88877665 36888888776432111 122 23345678899999995 44333 234678888 444 22
Q ss_pred EEEe-eCCCCCeEEEEeeecCCCcEEEEEECC--C--eEEEEEcCCCCeeeE-EeCCCC--cEEEEEEcCCCCEEEEEee
Q 001343 487 LFNF-EGHEAPVYSICPHHKENIQFIFSTAID--G--KIKAWLYDTMGSRVD-YDAPGH--WCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 487 ~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~d--g--~i~iwd~~~~~~~~~-~~~~~~--~i~~l~~s~~~~~l~~~~~ 558 (1096)
+..+ ........++.|+. ++.+++....+ + .|..+++.+...... +..+.. .+..+.+. +..|+....
T Consensus 311 ~~~l~~~~~~~~~s~~~~~--g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~ 386 (751)
T 2xe4_A 311 LEIVRPREKGVRYDVQMHG--TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGR 386 (751)
T ss_dssp EEESSCCCTTCCEEEEEET--TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEE
T ss_pred eEEeecCCCCceEEEeeee--CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEE
Confidence 1333 33445556665432 33344444443 2 566666654222222 222333 34555554 556655443
Q ss_pred ccCCCCeEEEEeC-------CCCeeeEEEcCcCccceEEEEE----eCCCC-EEEEEEcC---CeEEEEeCCCCeE
Q 001343 559 SKDGDSFLVEWNE-------SEGTIKRTYAGFRKKSNGVVQF----DTTQN-HFLAVGED---SQIKFWDMDNVNI 619 (1096)
Q Consensus 559 ~~~~~~~i~iwd~-------~~~~~~~~~~~~~~~~i~~~~~----~~~~~-~l~~~~~d---g~i~iwd~~~~~~ 619 (1096)
.++...|+++++ .+++..+.+.......+..+.+ ++++. .+++.+.. +.++.+|+.+++.
T Consensus 387 -~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 387 -RAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp -ETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred -eCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 223446777775 3443133333221111222222 34554 44443322 4678888877654
No 263
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.40 E-value=5.3e-06 Score=83.46 Aligned_cols=191 Identities=9% Similarity=0.014 Sum_probs=119.8
Q ss_pred CCeeeeeecCCCcEEEEec-CCeEEEEEcccceEEEeecCCCCCee--EEEEecCCCcEEEEeeCCCeEEEEeeccceee
Q 001343 832 EAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAST--FLAFHPQDNNIIAIGTEDSTIHIYNVRVDELC 908 (1096)
Q Consensus 832 ~~v~~l~~s~dg~~la~~~-dg~v~iwd~~~~~~~~~~~~h~~~i~--~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~ 908 (1096)
.-...+.|+. +++..+.+ +|.|+++|+.+++.++++ -. .... .+++.. +++.+..-.++.+.+||..+.+
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g--~~Ly~ltw~~~~v~V~D~~Tl~-- 127 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG--ERLYQLTWTEGLLFTWSGMPPQ-- 127 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS--SCEEEEESSSCEEEEEETTTTE--
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC--CEEEEEEccCCEEEEEECCcCc--
Confidence 3346788873 55555555 689999999999998887 22 2333 355543 4555556678999999999887
Q ss_pred eeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceeccccccCC-C-CCCCceEEEEee
Q 001343 909 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQD-A-LSAPISCAVYSC 985 (1096)
Q Consensus 909 ~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~-~-~~~~i~~l~~s~ 985 (1096)
.+..+.-.. . ...+.+|++.|+. ..++.|.++|..+.+.+..+.-.. + --..+..+.|.
T Consensus 128 -------------~~~ti~~~~--e--GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~- 189 (268)
T 3nok_A 128 -------------RERTTRYSG--E--GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA- 189 (268)
T ss_dssp -------------EEEEEECSS--C--CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred -------------EEEEEeCCC--c--eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-
Confidence 122221111 1 1233467887777 348899999999998887765321 0 01234566766
Q ss_pred CCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCc--cCCCccccceEEEecCCCCceEEEE
Q 001343 986 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSV--LNGSQTVYPLVVAAHPLEPNQFAIG 1048 (1096)
Q Consensus 986 dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~s~~l~~s~~d~~~l~s~ 1048 (1096)
+|++.+....+..|.+.|..+|++...+......+... ......|.- .|+|+|..+++++||
T Consensus 190 dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlN-GIA~dp~~~rlfVTG 253 (268)
T 3nok_A 190 NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLN-GIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEE-EEEECTTTCCEEEEE
T ss_pred CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceE-EEEEcCCCCEEEEeC
Confidence 88777666678899999999999888776543221110 001222333 799999334445544
No 264
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.39 E-value=7.7e-05 Score=87.23 Aligned_cols=305 Identities=12% Similarity=0.035 Sum_probs=177.3
Q ss_pred EEEEeC-CCeEEEEec-CCCCeeecccceeecccccCccccccccc--cCCCCEEEEEEcCCCCEEEEEECCCeEEEEEc
Q 001343 360 LLVGSS-NGEITLWEL-AMRDRLVSKPFKIWDMAACSLPFQASIFK--DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSY 435 (1096)
Q Consensus 360 lasg~~-dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~ 435 (1096)
+.+++. ++.|.-+|. .+|+.+-+.... .......... .-... ++. ++..|++++.|+.+..+|.
T Consensus 65 vyv~~~~~~~v~AlD~~~tG~~~W~~~~~-------~~~~~~~~~~~~~~~~~---~~~--~~~~v~v~~~dg~l~alD~ 132 (571)
T 2ad6_A 65 MYVHSAFPNNTYALNLNDPGKIVWQHKPK-------QDASTKAVMCCDVVDRG---LAY--GAGQIVKKQANGHLLALDA 132 (571)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCC-------CCGGGGGGCTTCSCCCC---CEE--ETTEEEEECTTSEEEEEET
T ss_pred EEEEeCCCCEEEEEeCCCCccEEEEEcCC-------CCccccccccccccccc---cEE--ECCEEEEEeCCCEEEEEEC
Confidence 555566 889999999 899876432111 0000000000 00011 122 3567888888999999999
Q ss_pred cCCCccccceeeccccc--CEEE-EEEecCCCcEEEEEEeC------CCcEEEEE-cCCceEEEeeCCCCC---------
Q 001343 436 AGSNDLRQHSQIDAHVG--AVND-LAFAYPNKLLCVVTCGD------DKLIKVWE-LSGRKLFNFEGHEAP--------- 496 (1096)
Q Consensus 436 ~~~~~~~~~~~l~~h~~--~v~~-l~~s~d~~~~~l~s~s~------d~~i~iwd-~~~~~~~~~~~~~~~--------- 496 (1096)
.+|+.+-... +..+.. .+.+ ... .++ .++.++. ++.|..+| .+|+.+.++......
T Consensus 133 ~tG~~~W~~~-~~~~~~~~~~~~~P~v-~~g---~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~ 207 (571)
T 2ad6_A 133 KTGKINWEVE-VCDPKVGSTLTQAPFV-AKD---TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDF 207 (571)
T ss_dssp TTCCEEEEEE-CCCGGGTCBCCSCCEE-ETT---EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTT
T ss_pred CCCCEEEEec-CCCCCccceeccCCEE-ECC---EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccc
Confidence 9998765322 222111 1211 111 134 3455544 79999999 899998776532211
Q ss_pred ----------------------------e-EEEEeeecCCCcEEEEEECC----------------CeEEEEEcCCCCee
Q 001343 497 ----------------------------V-YSICPHHKENIQFIFSTAID----------------GKIKAWLYDTMGSR 531 (1096)
Q Consensus 497 ----------------------------v-~~~~~~~~~~~~~l~s~~~d----------------g~i~iwd~~~~~~~ 531 (1096)
+ ..+++.+ +...++.+..+ +.|..+|.++++.+
T Consensus 208 ~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~--~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~ 285 (571)
T 2ad6_A 208 NSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP--KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAK 285 (571)
T ss_dssp TTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET--TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEE
T ss_pred ccccccccccccccccCcccceecCCCCeeeeEEEcC--CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEE
Confidence 0 1133332 33456555532 36999999999988
Q ss_pred eEEeCCCC---------cEEEEEEcCCCC---EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC------------ccc
Q 001343 532 VDYDAPGH---------WCTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR------------KKS 587 (1096)
Q Consensus 532 ~~~~~~~~---------~i~~l~~s~~~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~ 587 (1096)
..+....+ ...-+....+|+ .++.+.. ++.++++|..+|+.+..+.... ..+
T Consensus 286 W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~----~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p 361 (571)
T 2ad6_A 286 WGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDR----NGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTP 361 (571)
T ss_dssp EEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECT----TSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSE
T ss_pred EEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCC----CcEEEEEECCCCCEEeeecccCCccccccccccCCce
Confidence 87764321 111122224674 4455544 8899999999999887664321 001
Q ss_pred e--------------------------EEEEEeCCCCEEEEEE-------------------------------------
Q 001343 588 N--------------------------GVVQFDTTQNHFLAVG------------------------------------- 604 (1096)
Q Consensus 588 i--------------------------~~~~~~~~~~~l~~~~------------------------------------- 604 (1096)
+ ..++++|+...+++..
T Consensus 362 ~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~ 441 (571)
T 2ad6_A 362 VRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKK 441 (571)
T ss_dssp EECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSC
T ss_pred ecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCC
Confidence 1 2356788877777654
Q ss_pred cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccccccCCCcccccCcceeEE
Q 001343 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVA 684 (1096)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 684 (1096)
.+|.|+.||..+++.+....... .+....+...+..+++++.|+.|+.||..+++ .+..+..... ... ..+.
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~---~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~-~lw~~~~~~~-~~~---~p~~ 513 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKF---AAWGGTLYTKGGLVWYATLDGYLKALDNKDGK-ELWNFKMPSG-GIG---SPMT 513 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCC-EEEEEECSSC-CCS---CCEE
T ss_pred CCCeEEEEECCCCCEEEEecCCC---CccceeEEECCCEEEEEcCCCeEEEEECCCCC-EEEEEeCCCC-cEe---eeEE
Confidence 24789999999999888776543 22333333456778889999999999999994 4433332211 111 1234
Q ss_pred eecCCCeEEec
Q 001343 685 LKVSASSAVSS 695 (1096)
Q Consensus 685 ~s~~g~~lv~~ 695 (1096)
+..+|+..+..
T Consensus 514 ~~~~G~~yv~~ 524 (571)
T 2ad6_A 514 YSFKGKQYIGS 524 (571)
T ss_dssp EEETTEEEEEE
T ss_pred EEECCEEEEEE
Confidence 55777766444
No 265
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.38 E-value=4.3e-05 Score=76.91 Aligned_cols=182 Identities=7% Similarity=0.042 Sum_probs=125.7
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~ 485 (1096)
.-...+.|+ ++.+..+.+.+|.|+++|+++++.++.. +.. ........++++. +.+..-.++.+.++| .+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---~~FgeGit~~g~~-Ly~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---NIFAEGLASDGER-LYQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---TCCEEEEEECSSC-EEEEESSSCEEEEEETTTTE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---CcceeEEEEeCCE-EEEEEccCCEEEEEECCcCc
Confidence 345778887 4566667778889999999999888754 332 2333223334554 445566789999999 8999
Q ss_pred eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC--C---cEEEEEEcCCCCEEEEEeecc
Q 001343 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--H---WCTTMLYSADGSRLFSCGTSK 560 (1096)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~---~i~~l~~s~~~~~l~~~~~~~ 560 (1096)
.+.++..... -+.+++ ++..|+.+..++.|.++|..+.+....+.... . .++.+.|. +|+ |.+...
T Consensus 128 ~~~ti~~~~e-GwGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw-- 198 (268)
T 3nok_A 128 RERTTRYSGE-GWGLCY----WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIW-- 198 (268)
T ss_dssp EEEEEECSSC-CCCEEE----ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET--
T ss_pred EEEEEeCCCc-eeEEec----CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEEC--
Confidence 9988875322 245543 44677777779999999999988877654422 2 45667776 665 444432
Q ss_pred CCCCeEEEEeCCCCeeeEEEcCc------------CccceEEEEEeCCCCEEEEEEc
Q 001343 561 DGDSFLVEWNESEGTIKRTYAGF------------RKKSNGVVQFDTTQNHFLAVGE 605 (1096)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~~~~ 605 (1096)
....|.+.|.++++.+..+... .....+.++++|+++.|++.+.
T Consensus 199 -~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 -HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp -TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred -CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 2679999999999999887643 1236688999998777666654
No 266
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.38 E-value=8.8e-05 Score=80.31 Aligned_cols=255 Identities=9% Similarity=0.014 Sum_probs=143.7
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCcc--cc-c---cccccCCCCEEEEEEcCCCC
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLP--FQ-A---SIFKDVPISVSRVAWSPDGN 419 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~-~---~~~~~h~~~V~~l~~spd~~ 419 (1096)
...+++|+++|+ ++.++..++.|..|+..+++... |........ .. . .........+..+++++++.
T Consensus 20 ~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 20 APNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVD------FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp CCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEE------EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred CceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEE------EecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 457788999998 57778889999999987654321 100000000 00 0 00000123578999998434
Q ss_pred EEEEEECCCeEEEEEccCCCccccce-eecc-cccCEEEEEEec-CCCcEEEEEEeC-----------------CCcEEE
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHS-QIDA-HVGAVNDLAFAY-PNKLLCVVTCGD-----------------DKLIKV 479 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~-~l~~-h~~~v~~l~~s~-d~~~~~l~s~s~-----------------d~~i~i 479 (1096)
.|.++...+.|..+|..++.. ..+. ...+ .......+++.+ +|. +.++-.. ++.|..
T Consensus 93 ~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 169 (322)
T 2fp8_A 93 QLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169 (322)
T ss_dssp EEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred cEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceEEE
Confidence 455565556688888775432 2111 1111 123578899999 887 5555432 367888
Q ss_pred EE-cCCceEEEeeCCCCCeEEEEeeecCCCcEEEEE-ECCCeEEEEEcCCCC--eeeEEeCCCCcEEEEEEcCCCCEEEE
Q 001343 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST-AIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSADGSRLFS 555 (1096)
Q Consensus 480 wd-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~~ 555 (1096)
|| .+++.. .+.........+++++ ++..|+.+ ...+.|..|++.... ....+..... ...+++.++|++.++
T Consensus 170 ~d~~~~~~~-~~~~~~~~p~gia~~~--dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 170 YDPSTKETT-LLLKELHVPGGAEVSA--DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp EETTTTEEE-EEEEEESCCCEEEECT--TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEE
T ss_pred EeCCCCEEE-EeccCCccCcceEECC--CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEE
Confidence 88 445433 2221122345678865 56655554 566899999987421 1112211223 788999999986666
Q ss_pred Eeecc------CCCCeEEEEeCCCCeeeEEEcCcCc---cceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 556 CGTSK------DGDSFLVEWNESEGTIKRTYAGFRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 556 ~~~~~------~~~~~i~iwd~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
..... ...+.|..+|. .++.+..+....+ ..+..+++ .++..+++....+.|..+++..
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred ecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 53200 00356888886 4777777654431 23444555 3444444444677888888753
No 267
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.38 E-value=0.00022 Score=76.37 Aligned_cols=238 Identities=9% Similarity=0.017 Sum_probs=140.9
Q ss_pred CCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEE
Q 001343 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1096)
Q Consensus 333 ~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1096)
.+.+++..+.-......++|+|+|+ ++++-..++.|..||...+ ... .+ .....+..+
T Consensus 20 ~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~-~~~-----~~---------------~~~~~p~gi 77 (306)
T 2p4o_A 20 APAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQI-----HA---------------TVEGKVSGL 77 (306)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EEE-----EE---------------ECSSEEEEE
T ss_pred CCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCc-eEE-----EE---------------eCCCCceeE
Confidence 3455566666556789999999998 7777667899999997653 221 11 112468899
Q ss_pred EEcCCCCEEEEEECCC--eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCc-eEE
Q 001343 413 AWSPDGNYVGVAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLF 488 (1096)
Q Consensus 413 ~~spd~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~-~~~ 488 (1096)
+++++|+++++..... .|..++..+++... +..+. .......++..+++. .+++...++.|+++| ..++ .+.
T Consensus 78 a~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~-~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v~ 153 (306)
T 2p4o_A 78 AFTSNGDLVATGWNADSIPVVSLVKSDGTVET-LLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIW 153 (306)
T ss_dssp EECTTSCEEEEEECTTSCEEEEEECTTSCEEE-EEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEcCCCcEEEEeccCCcceEEEEcCCCCeEEE-EEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeEE
Confidence 9999999666554332 46667767765322 11121 122335555555554 555555688999999 4432 121
Q ss_pred Eee---------CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC-CCe--eeEEeCCCCcEEEEEEcCCCCEEEEE
Q 001343 489 NFE---------GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGS--RVDYDAPGHWCTTMLYSADGSRLFSC 556 (1096)
Q Consensus 489 ~~~---------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~l~~s~~~~~l~~~ 556 (1096)
... +.-.....+ ++++ +.++++-...+.|..++++. +.. ...+. .......++++++|+..++.
T Consensus 154 ~~~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~ 229 (306)
T 2p4o_A 154 LEHPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGAT 229 (306)
T ss_dssp EECGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEEC
T ss_pred EECCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEe
Confidence 111 111233445 4432 23445556678999999875 211 11111 11235678999999876655
Q ss_pred eeccCCCCeEEEEeCCCCeeeEE--EcCcCccceEEEEEe---CCCCEEEEEEcC
Q 001343 557 GTSKDGDSFLVEWNESEGTIKRT--YAGFRKKSNGVVQFD---TTQNHFLAVGED 606 (1096)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~---~~~~~l~~~~~d 606 (1096)
.. .+.|.++|.. ++.... +.... ....+++|. ++++.|++++..
T Consensus 230 ~~----~~~V~~~~~~-G~~~~~~~~~~~~-~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 230 HI----YNSVVRIAPD-RSTTIIAQAEQGV-IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp BT----TCCEEEECTT-CCEEEEECGGGTC-TTEEEEEECCSTTTTTEEEEEECT
T ss_pred CC----CCeEEEECCC-CCEEEEeeccccc-CCceEEEEecccCCCCEEEEECCC
Confidence 43 6789999975 554332 22221 257789998 787777776654
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.38 E-value=1.4e-05 Score=95.91 Aligned_cols=277 Identities=8% Similarity=0.019 Sum_probs=153.8
Q ss_pred EEEEcC-CCCcEEEEEeCCC-----------eEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcC
Q 001343 349 SMDFHP-SHQTLLLVGSSNG-----------EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1096)
Q Consensus 349 ~v~fsp-~g~~llasg~~dg-----------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1096)
++++.| +|+ +++.|+.+. .+.+||..+++-... . .+...+.....++++..
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~---~-------------~~~~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR---T-------------VTVTKHDMFCPGISMDG 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC---E-------------EEECSCCCSSCEEEECT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeC---c-------------ccCCCCCCccccccCCC
Confidence 567777 777 788887543 688899887764321 0 00112333344578889
Q ss_pred CCCEEEEEEC-CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe-CC-----CcEEEEE-cCCceEE
Q 001343 417 DGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DD-----KLIKVWE-LSGRKLF 488 (1096)
Q Consensus 417 d~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~d-----~~i~iwd-~~~~~~~ 488 (1096)
+++.+++|+. +..+.+||..+++-... ..+.... .-.+++..++++ +++.|+ .+ ..+.+|| .+++-.
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~~-~~~~~~R-~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~- 327 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIPG-PDMQVAR-GYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT- 327 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEEC-CCCSSCC-SSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE-
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeEC-CCCCccc-cccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce-
Confidence 9999999984 46899999987643221 1122111 123455667888 778887 44 5799999 555432
Q ss_pred EeeCCC-CCe----EEEEeeecCCCcEEEEEECC---------CeEEEEEcCCCCeeeEEeCCC---------CcEEEEE
Q 001343 489 NFEGHE-APV----YSICPHHKENIQFIFSTAID---------GKIKAWLYDTMGSRVDYDAPG---------HWCTTML 545 (1096)
Q Consensus 489 ~~~~~~-~~v----~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~---------~~i~~l~ 545 (1096)
.+.... .+. ....+ ..++..++.|+.+ ..+..||..+........... ..-.++.
T Consensus 328 ~~~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EETTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eCCCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 221000 000 00001 1133444555444 356778877665333221111 1224444
Q ss_pred Ec-CCCCEEEEEeeccCC----CC---eEEEEeCCCCeeeEEE--cCcCccceEEEEEeCCCCEEEEEEcC---------
Q 001343 546 YS-ADGSRLFSCGTSKDG----DS---FLVEWNESEGTIKRTY--AGFRKKSNGVVQFDTTQNHFLAVGED--------- 606 (1096)
Q Consensus 546 ~s-~~~~~l~~~~~~~~~----~~---~i~iwd~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d--------- 606 (1096)
+. .+++.++.|+..... .. .+.+||..+....... ...........+..|+++.++.|+.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 43 366667776642100 11 6788888877655443 22222223345666899999998854
Q ss_pred --CeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEEC
Q 001343 607 --SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1096)
Q Consensus 607 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 649 (1096)
..+.+||..+.+....-.............+.|++++++.|+.
T Consensus 486 ~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 486 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999988765432222211112234556789999999985
No 269
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.37 E-value=0.0015 Score=76.33 Aligned_cols=195 Identities=9% Similarity=0.083 Sum_probs=117.2
Q ss_pred eeeeecCCCcEEEEec---------------------C----CeEEEEEcccceEEEeecC--CCC----CeeE---EEE
Q 001343 835 PCIALSKNDSYVMSAT---------------------G----GKISLFNMMTFKVMTTFMS--PPP----ASTF---LAF 880 (1096)
Q Consensus 835 ~~l~~s~dg~~la~~~---------------------d----g~v~iwd~~~~~~~~~~~~--h~~----~i~~---l~~ 880 (1096)
..++++|+..+++.+. | +.|.-+|..+|+.+-.++. |.. .+.. +..
T Consensus 249 ~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~ 328 (582)
T 1flg_A 249 QSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDY 328 (582)
T ss_dssp SCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEE
T ss_pred CCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEee
Confidence 3567777776666544 1 5799999999999877642 321 1111 222
Q ss_pred e-cCCC---cEEEEeeCCCeEEEEeeccceeeeeecccccc---------ccceeeecCC--------------------
Q 001343 881 H-PQDN---NIIAIGTEDSTIHIYNVRVDELCVWSIDTWEK---------RKSVTIHIPA-------------------- 927 (1096)
Q Consensus 881 s-~~d~---~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~---------~~~~~~~~~~-------------------- 927 (1096)
. . ++ +.++.++.+|.+.++|..+++ .+|....... ...+++....
T Consensus 329 ~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~-~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P 406 (582)
T 1flg_A 329 KAK-DGKIVKATAHADRNGFFYVVDRSNGK-LQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSP 406 (582)
T ss_dssp ECS-SSCEEEEEEEECTTSEEEEEETTTCC-EEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESS
T ss_pred ecC-CCCEEEEEEEECCCceEEEEECCCCC-EecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECc
Confidence 2 4 56 478889999999999999998 6775543210 1111111000
Q ss_pred CCCC-CCCceEEEecCCcEEEE-Ee---------------------------------cceEEEEEcccceeccccccCC
Q 001343 928 GKTP-TGDTRVQFNADQVRMLV-VH---------------------------------ETQLAIYDASKMERIRQWTPQD 972 (1096)
Q Consensus 928 ~~~~-~~v~~v~fs~dg~~l~~-~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~ 972 (1096)
+... ..-..++++|+...+++ .. ++.|..||+.+|+.+=+....
T Consensus 407 ~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~- 485 (582)
T 1flg_A 407 PFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH- 485 (582)
T ss_dssp CTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-
T ss_pred CCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-
Confidence 0000 01235677777655554 22 578999999999865444322
Q ss_pred CCCCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEE
Q 001343 973 ALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAI 1047 (1096)
Q Consensus 973 ~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s 1047 (1096)
..+..-.....+.++++++.||.++.||.++|+.+....... + +...-+.|.. +|+++++
T Consensus 486 ---~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~----g-------~~a~P~~y~~-~G~qYv~ 545 (582)
T 1flg_A 486 ---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS----G-------IVSPPITWEQ-DGEQYLG 545 (582)
T ss_dssp ---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS----C-------CCSCCEEEEE-TTEEEEE
T ss_pred ---CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC----C-------cccCceEEEE-CCEEEEE
Confidence 122222233457788889999999999999999877665322 2 2211256655 7776555
No 270
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.37 E-value=7.4e-05 Score=80.90 Aligned_cols=240 Identities=12% Similarity=0.069 Sum_probs=144.5
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcccccee-----------------ecccccCEEEEEEec-CCCcEEEE
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ-----------------IDAHVGAVNDLAFAY-PNKLLCVV 469 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-----------------l~~h~~~v~~l~~s~-d~~~~~l~ 469 (1096)
...+++|+++|+++.++..++.|..|+..+++.. .+.. .......+..+++.+ ++. |+
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~---l~ 95 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ---LY 95 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE---EE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc---EE
Confidence 4567889999997888888899999988765322 1100 001123588999997 554 44
Q ss_pred EEeCCCcEEEEEcCCceEEEeeCC-----CCCeEEEEeeecCCCcEEEEEEC-----------------CCeEEEEEcCC
Q 001343 470 TCGDDKLIKVWELSGRKLFNFEGH-----EAPVYSICPHHKENIQFIFSTAI-----------------DGKIKAWLYDT 527 (1096)
Q Consensus 470 s~s~d~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~ 527 (1096)
.+...+.|..+|..+..+..+... ......+++.+. +|.+.++... +|.|..||..+
T Consensus 96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQR-TGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTT-TCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecC-CCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 454455688888443333333211 123567777441 4455554322 36788888765
Q ss_pred CCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe--eeEEEcCcCccceEEEEEeCCCCEEEEEEc
Q 001343 528 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (1096)
Q Consensus 528 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 605 (1096)
+....... .......++++++|+.|+++.. ..+.|..+++.... ....+..... ...++++++|++.++...
T Consensus 175 ~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~---~~~~I~~~~~~~~~~~~~~~~~~~~g--P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 175 KETTLLLK-ELHVPGGAEVSADSSFVLVAEF---LSHQIVKYWLEGPKKGTAEVLVKIPN--PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp TEEEEEEE-EESCCCEEEECTTSSEEEEEEG---GGTEEEEEESSSTTTTCEEEEEECSS--EEEEEECTTSCEEEEEEE
T ss_pred CEEEEecc-CCccCcceEECCCCCEEEEEeC---CCCeEEEEECCCCcCCccceEEeCCC--CCCeEECCCCCEEEEecC
Confidence 54332211 1123457999999997776643 26789999987521 1112211111 566899999987666544
Q ss_pred ----------CCeEEEEeCCCCeEEEEeecCCC--CCCccEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 606 ----------DSQIKFWDMDNVNILTSTDAEGG--LPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 606 ----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
.+.|..+|.. ++.+..+..... ...+..+++ .++.++++....+.|..+++..
T Consensus 249 ~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp ETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred cccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 4678888874 777777665432 235667776 3566665555677888888753
No 271
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.36 E-value=0.0018 Score=69.72 Aligned_cols=280 Identities=10% Similarity=0.036 Sum_probs=152.1
Q ss_pred cCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 342 ~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.....+.+|.|.+.+. .+|+| ..|.| +...+.|+.-..... ........+.+|.|++ +..+
T Consensus 33 ~~~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~tW~~~~~---------------~~~~~~~~~~~i~~~~-~~~~ 93 (327)
T 2xbg_A 33 PTTATILDMSFIDRHH-GWLVG-VNATL-METRDGGQTWEPRTL---------------VLDHSDYRFNSVSFQG-NEGW 93 (327)
T ss_dssp SCSSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSSCEECCC---------------CCSCCCCEEEEEEEET-TEEE
T ss_pred CCCCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCCCeECCC---------------CCCCCCccEEEEEecC-CeEE
Confidence 3345799999998877 57755 56755 333343432111000 0112345688999986 4444
Q ss_pred EEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceE-EEeeCCCCCeEEE
Q 001343 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-FNFEGHEAPVYSI 500 (1096)
Q Consensus 422 ~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~~~~v~~~ 500 (1096)
+ ++.++.|.. ..+.|+..........+.+.+..+.+.+++. .++.+ .++.|..-+..|+.- .........+..+
T Consensus 94 ~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~g~v~~S~DgG~tW~~~~~~~~~~~~~~ 168 (327)
T 2xbg_A 94 I-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMIT-NVGAIYRTKDSGKNWQALVQEAIGVMRNL 168 (327)
T ss_dssp E-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEE-TTCCEEEESSTTSSEEEEECSCCCCEEEE
T ss_pred E-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEe-CCccEEEEcCCCCCCEEeecCCCcceEEE
Confidence 4 455665543 4444554432211112445678888887776 55544 466543322333322 2223455678888
Q ss_pred EeeecCCCcEEEEEECCCeE-EEEEcCCCCeeeE-EeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeE
Q 001343 501 CPHHKENIQFIFSTAIDGKI-KAWLYDTMGSRVD-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1096)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i-~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1096)
.+.+ ++.+++++ .+|.+ +-+|-. +..-.. .......+..+.+.+++..++++. ++.++..+...++.-.
T Consensus 169 ~~~~--~~~~~~~g-~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~ 239 (327)
T 2xbg_A 169 NRSP--SGEYVAVS-SRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWG 239 (327)
T ss_dssp EECT--TSCEEEEE-TTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEEC
T ss_pred EEcC--CCcEEEEE-CCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeE
Confidence 8865 45566555 44544 333320 111111 123345788999999988766553 6677766433233222
Q ss_pred EEcCc---CccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecC-CCCCCccEEEEeCCCCEEEEEECCCcEE
Q 001343 579 TYAGF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-GGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1096)
Q Consensus 579 ~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 654 (1096)
.+... ....+..+.+.+++..+++ +.+|.| ++..+.++.-..+... .....+.++.|.+++ .+++++.+|.|.
T Consensus 240 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~ 316 (327)
T 2xbg_A 240 ELLSPLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILL 316 (327)
T ss_dssp CCBCTTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEE
T ss_pred eccCCcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEE
Confidence 22211 1124677888887665555 456766 4556666655555422 112367889997554 466777888776
Q ss_pred EEE
Q 001343 655 ILA 657 (1096)
Q Consensus 655 iwd 657 (1096)
-++
T Consensus 317 ~~~ 319 (327)
T 2xbg_A 317 RYV 319 (327)
T ss_dssp EEC
T ss_pred EEc
Confidence 654
No 272
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.34 E-value=0.00098 Score=72.55 Aligned_cols=248 Identities=13% Similarity=0.010 Sum_probs=150.5
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
.+..+|.+..+++. ++++ ....|+..++....... +......+..++|++.+..|..
T Consensus 33 ~d~~~C~~~~~~~~-ll~~--~~~~I~~i~~~g~~~~~--------------------~~~~~~~~~~l~~d~~~~~ly~ 89 (349)
T 3v64_C 33 PDRRSCKALGPEPV-LLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFW 89 (349)
T ss_dssp TTSSCEEESSSCCE-EEEE--CBSCEEEECTTSCCEEE--------------------EECSCSCEEEEEEETTTTEEEE
T ss_pred CCCCcccccccCce-eEee--cccceEEEeCCCCeeEE--------------------eecCCCceEEEEEeccccEEEE
Confidence 34567777777543 4443 45668888876544321 1112345889999987666665
Q ss_pred EE-CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEee-CCCCCeEEEE
Q 001343 424 AF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSIC 501 (1096)
Q Consensus 424 ~~-~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~ 501 (1096)
.. ..+.|..++.+++.... .+.........+++.+.+.. +.++-...+.|.+.+.+|.....+. ..-.....++
T Consensus 90 ~D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ia 165 (349)
T 3v64_C 90 SDVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA 165 (349)
T ss_dssp EETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEE
T ss_pred EeccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEE
Confidence 54 56889999988754222 12222345678999986663 4566666789999996665444433 3334578888
Q ss_pred eeecCCCcEEEEEECC-CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEE
Q 001343 502 PHHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1096)
+.|. ++.++++-... +.|..++++.................+++++++..|+.+.. ..+.|..+|+........+
T Consensus 166 vdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~ 241 (349)
T 3v64_C 166 LHPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVI 241 (349)
T ss_dssp EETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEE
T ss_pred EecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEE
Confidence 8764 33445554445 78888887654333222233446789999998888877653 3678999998754333333
Q ss_pred cCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEee
Q 001343 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1096)
Q Consensus 581 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1096)
..... ....+++. .+..+++-...+.|..++..+++....+.
T Consensus 242 ~~~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 242 SQGLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp CSSCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eCCCC-CceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 32222 34556663 34444444466778888866666555554
No 273
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.33 E-value=0.0003 Score=75.33 Aligned_cols=228 Identities=15% Similarity=0.083 Sum_probs=137.0
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC-CC-cEEEEE-cC
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DK-LIKVWE-LS 483 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~-d~-~i~iwd-~~ 483 (1096)
.....++|+++|+.+++-..++.|..||.+++ ... .......+..+++.++|+ ++++... ++ .|..+| .+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~----~~~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQI----HATVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEE----EEECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEE----EEeCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 46788999999997777667899999998753 222 112235688999999998 5555443 22 477777 66
Q ss_pred CceEEEeeC-CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeE-Ee---------CCCCcEEEEEEcCCCCE
Q 001343 484 GRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YD---------APGHWCTTMLYSADGSR 552 (1096)
Q Consensus 484 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~---------~~~~~i~~l~~s~~~~~ 552 (1096)
++....... .......++..+ ++..+++...++.|.++|......... .. ..-.....+ +++++.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 665332221 112234444322 333444444588888888765321111 10 111234555 788888
Q ss_pred EEEEeeccCCCCeEEEEeCCC-Cee--eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCC
Q 001343 553 LFSCGTSKDGDSFLVEWNESE-GTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1096)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1096)
|+.+.. ..+.|..+++.. ++. ...+... . ....++++++|+.+++....+.|.+++.. ++...........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~-~-~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ-T-NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES-C-CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc-C-CCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence 777653 367899999864 321 1222111 1 23348899999877776677899999975 5553322222222
Q ss_pred CCccEEEEe---CCCCEEEEEECCC
Q 001343 630 PNLPRLRFS---KEGNLLAVTTADN 651 (1096)
Q Consensus 630 ~~v~~~~~s---~~~~~l~~~~~dg 651 (1096)
....+++|. |++..|++++..+
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCceEEEEecccCCCCEEEEECCCC
Confidence 367899998 8887777766543
No 274
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.32 E-value=0.0006 Score=79.67 Aligned_cols=311 Identities=11% Similarity=0.049 Sum_probs=174.5
Q ss_pred CCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 001343 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYS 434 (1096)
Q Consensus 355 ~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd 434 (1096)
++. +++++.++.|.-+|..+|+.+-+.... ...........-... +++ .+..|++++.|+.|.-+|
T Consensus 68 ~g~--vyv~~~~~~v~AlD~~tG~~~W~~~~~-------~~~~~~~~~~~~~~g---~a~--~~~~v~~~t~dg~l~AlD 133 (582)
T 1flg_A 68 DGV--IYVTASYSRLFALDAKTGKRLWTYNHR-------LPDDIRPCCDVVNRG---AAI--YGDKVFFGTLDASVVALN 133 (582)
T ss_dssp TTE--EEEEETTTEEEEEESSSCCEEEEEECC-------CCTTCCCSSCSCCCC---CEE--ETTEEEEEETTTEEEEEE
T ss_pred CCE--EEEEcCCCCEEEEECCCCcEEEEEcCC-------CCcccccccccCCCc---cEE--ECCEEEEEeCCCEEEEEE
Confidence 454 444555455999999999976432111 000000000000011 112 356778888999999999
Q ss_pred ccCCCccccceeeccccc--CEE-EEEEecC---CCcEEEEEEe------CCCcEEEEE-cCCceEEEeeCCCCCe----
Q 001343 435 YAGSNDLRQHSQIDAHVG--AVN-DLAFAYP---NKLLCVVTCG------DDKLIKVWE-LSGRKLFNFEGHEAPV---- 497 (1096)
Q Consensus 435 ~~~~~~~~~~~~l~~h~~--~v~-~l~~s~d---~~~~~l~s~s------~d~~i~iwd-~~~~~~~~~~~~~~~v---- 497 (1096)
..+|+.+-... +..+.. .+. ......+ ++. .++.++ .++.|+.+| .+|+.+.........+
T Consensus 134 ~~TG~~~W~~~-~~~~~~~~~~~~sP~v~~~~~~G~~-~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~ 211 (582)
T 1flg_A 134 KNTGKVVWKKK-FADHGAGYTMTGAPTIVKDGKTGKV-LLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLN 211 (582)
T ss_dssp SSSCCEEEEEE-CSCGGGTCBCCSCCEEEECTTTCCE-EEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEET
T ss_pred CCCCCEEeeec-CCCCCcCcccccCCEEeCCCcCCcE-EEEEeccccccCCCCEEEEEECCCCCEEeecCCCcccccccc
Confidence 99998764322 211110 111 1111222 331 244443 378999999 8999887654321100
Q ss_pred -------------------------------------EEEEeeecCCCcEEEEEEC--------------------C---
Q 001343 498 -------------------------------------YSICPHHKENIQFIFSTAI--------------------D--- 517 (1096)
Q Consensus 498 -------------------------------------~~~~~~~~~~~~~l~s~~~--------------------d--- 517 (1096)
..+++.+ +..+++.+.. |
T Consensus 212 ~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~--~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~ 289 (582)
T 1flg_A 212 GKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDA--ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLY 289 (582)
T ss_dssp TEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEET--TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTT
T ss_pred CcccccccccccccCCCccccccccccccccCCccccCCceEcC--CCCEEEEeCCCCCcccCcccccCCCcccccCCcc
Confidence 0122322 3346665553 2
Q ss_pred -CeEEEEEcCCCCeeeEEeCCCC---------cEEEEEEc-CCCC---EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc
Q 001343 518 -GKIKAWLYDTMGSRVDYDAPGH---------WCTTMLYS-ADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1096)
Q Consensus 518 -g~i~iwd~~~~~~~~~~~~~~~---------~i~~l~~s-~~~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 583 (1096)
+.|..+|.++++.+..+....+ ...-+... .+|+ .++.++. ++.++++|..+|+.+..+...
T Consensus 290 ~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~----~G~l~~lD~~tG~~lw~~~~~ 365 (582)
T 1flg_A 290 TSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADR----NGFFYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp CSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECT----TSEEEEEETTTCCEEEEEESS
T ss_pred cceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECC----CceEEEEECCCCCEecccccc
Confidence 6899999999999887754321 11111221 4674 5555654 899999999999988766543
Q ss_pred Cc------------cce--------------------------------EEEEEeCCCCEEEEEE---------------
Q 001343 584 RK------------KSN--------------------------------GVVQFDTTQNHFLAVG--------------- 604 (1096)
Q Consensus 584 ~~------------~~i--------------------------------~~~~~~~~~~~l~~~~--------------- 604 (1096)
.. .++ ..++++|+...+++..
T Consensus 366 ~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~ 445 (582)
T 1flg_A 366 DNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYT 445 (582)
T ss_dssp SCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCC
T ss_pred cCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeeccccccc
Confidence 20 000 1245666555555432
Q ss_pred ------------------cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCCccccc
Q 001343 605 ------------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR 666 (1096)
Q Consensus 605 ------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 666 (1096)
.+|.|+.||+.+++.+........ +..-.....+.+++.++.|+.++.||..+++ .+-
T Consensus 446 ~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagglvf~g~~dg~l~A~D~~tG~-~lW 521 (582)
T 1flg_A 446 KGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP---LWAGVLATAGNLVFTGTGDGYFKAFDAKSGK-ELW 521 (582)
T ss_dssp TTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC---CCSCCEEETTTEEEEECTTSEEEEEETTTCC-EEE
T ss_pred CCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC---CcccceEeCCCEEEEECCCCcEEEEECCCCC-EEE
Confidence 257899999999998877764432 2222222356788889999999999999994 443
Q ss_pred cccCCCcccccCcceeEEeecCCCeEEec
Q 001343 667 AVENPPFEALRTPIESVALKVSASSAVSS 695 (1096)
Q Consensus 667 ~~~~~~~~~~~~~v~~~~~s~~g~~lv~~ 695 (1096)
.+..... .. ..-+.+..+|+..++.
T Consensus 522 ~~~~~~g-~~---a~P~~y~~~G~qYv~~ 546 (582)
T 1flg_A 522 KFQTGSG-IV---SPPITWEQDGEQYLGV 546 (582)
T ss_dssp EEECSSC-CC---SCCEEEEETTEEEEEE
T ss_pred EecCCCC-cc---cCceEEEECCEEEEEE
Confidence 3333211 11 1225666788765443
No 275
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.30 E-value=0.00018 Score=71.93 Aligned_cols=184 Identities=8% Similarity=0.032 Sum_probs=124.1
Q ss_pred CCCEEEEEEcCCCCEEEEEECC--CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c
Q 001343 406 PISVSRVAWSPDGNYVGVAFTK--HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1096)
Q Consensus 406 ~~~V~~l~~spd~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~ 482 (1096)
..-...+.|++ +.+..+.+.+ ..|+++|+.+++.++.. .+.. .........++.. +.+..-.++.+.++| .
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~-~l~~---~~fgeGi~~~~~~-ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA-EVPP---PYFGAGIVAWRDR-LIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE-ECCT---TCCEEEEEEETTE-EEEEESSSSEEEEEETT
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE-eCCC---CcceeEEEEeCCE-EEEEEeeCCEEEEEECC
Confidence 45577899986 5555555554 48999999999877643 2222 2222222333553 444556789999999 8
Q ss_pred CCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC-----CcEEEEEEcCCCCEEEEEe
Q 001343 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-----HWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~l~~s~~~~~l~~~~ 557 (1096)
+.+.+.++...... +.++. ++..|+.+..++.|.++|..+.+....+.... ..++.+.+. +|+ +.+..
T Consensus 94 tl~~~~ti~~~~~G-wglt~----dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyanv 166 (243)
T 3mbr_X 94 TLTPRARFRYPGEG-WALTS----DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-LLANV 166 (243)
T ss_dssp TTEEEEEEECSSCC-CEEEE----CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEE
T ss_pred cCcEEEEEeCCCCc-eEEee----CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE-EEEEE
Confidence 99999888754332 45543 34556666678999999999988776655422 245566665 565 44433
Q ss_pred eccCCCCeEEEEeCCCCeeeEEEcCc------------CccceEEEEEeCCCCEEEEEEc
Q 001343 558 TSKDGDSFLVEWNESEGTIKRTYAGF------------RKKSNGVVQFDTTQNHFLAVGE 605 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~~~~ 605 (1096)
. ....|.+.|.++++.+..+... .....+.++++|+++.|++.+.
T Consensus 167 w---~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 167 W---LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp T---TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred C---CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 2 2679999999999999887632 2236688999998888777764
No 276
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.27 E-value=0.00083 Score=74.31 Aligned_cols=247 Identities=13% Similarity=0.016 Sum_probs=150.9
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE-
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA- 424 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~- 424 (1096)
.-.|.+..+.+. +++ + ....|+..++..+.... +......+..++|++.+..|...
T Consensus 78 ~~~C~~~~~~~~-l~~-~-~~~~I~~i~~~~~~~~~--------------------~~~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEPV-LLF-A-NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCCE-EEE-E-CBSCEEEECTTSCCCEE--------------------EECSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccce-eEe-e-cCccceeeccCCCcEEE--------------------EecCCCccEEEEEecCCCeEEEEe
Confidence 445666666442 333 3 45678888887654321 11223458899999876666555
Q ss_pred ECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEe-eCCCCCeEEEEee
Q 001343 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF-EGHEAPVYSICPH 503 (1096)
Q Consensus 425 ~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~~ 503 (1096)
...+.|..++.+++.... .+.........+++.+.+.. +.++-...+.|.+.+.+|.....+ ...-.....+++.
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 456789999988754222 12222334578899886663 455666677888888656544433 3333557888887
Q ss_pred ecCCCcEEEEEECC-CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcC
Q 001343 504 HKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (1096)
Q Consensus 504 ~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 582 (1096)
|. ++.++++-... +.|..++++.................+++++++..|+.+.. ..+.|..+|+........+..
T Consensus 211 p~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cC-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 64 33444444444 78888887754444443334446889999998888877653 367899999865443333332
Q ss_pred cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeec
Q 001343 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 583 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1096)
... ....+++. .+..+++-...+.|..++..+++....+..
T Consensus 287 ~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 287 GLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCC-CceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 222 44556663 344455555677888888767766666553
No 277
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.24 E-value=0.0006 Score=69.28 Aligned_cols=199 Identities=10% Similarity=0.058 Sum_probs=130.9
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
.+.+..++|+|++..|+|+...++.|...|.. ++.+.... +.+ ......|++.+++.++++
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~vs 86 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVIS 86 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEEE
Confidence 35799999999877678888889999999987 77665311 222 256888999999987776
Q ss_pred EECCCeEEEEEccCCCcccccee--e----cccccCEEEEEEecCCCcEEEEEEeCCC--cEEEEE--cCCceEEEee--
Q 001343 424 AFTKHLIQLYSYAGSNDLRQHSQ--I----DAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWE--LSGRKLFNFE-- 491 (1096)
Q Consensus 424 ~~~dg~i~vwd~~~~~~~~~~~~--l----~~h~~~v~~l~~s~d~~~~~l~s~s~d~--~i~iwd--~~~~~~~~~~-- 491 (1096)
.-.++.+.++++.....+..... + ...+.....++|+|+++. |.++.... .|+.|+ ..+..+..+.
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l~i~~~~ 164 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNELHISKDK 164 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCceeeecch
Confidence 65678899998876543221111 1 123556799999999984 44444443 455554 1222222221
Q ss_pred -----CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCC---------CcEEEEEEcCCCCEEEEEe
Q 001343 492 -----GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------HWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 492 -----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~l~~s~~~~~l~~~~ 557 (1096)
.+...+.+++++|. .+++++.....+.+.++|... +.+..+.... ...-.|+|.++|+..++ +
T Consensus 165 ~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-s 241 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-S 241 (255)
T ss_dssp HHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-E
T ss_pred hhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-c
Confidence 13345789999886 457788888888999998664 3444443332 26789999999985555 4
Q ss_pred eccCCCCeEEEEe
Q 001343 558 TSKDGDSFLVEWN 570 (1096)
Q Consensus 558 ~~~~~~~~i~iwd 570 (1096)
. .+.++.+.
T Consensus 242 E----~n~~y~f~ 250 (255)
T 3qqz_A 242 E----PNRFYRFT 250 (255)
T ss_dssp T----TTEEEEEE
T ss_pred C----CceEEEEE
Confidence 3 55666654
No 278
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.23 E-value=0.00041 Score=69.28 Aligned_cols=184 Identities=15% Similarity=0.105 Sum_probs=126.6
Q ss_pred cCEEEEEEecCCCcEEEEEEeCC--CcEEEEE-cCCceEEEeeCCCCCe-EEEEeeecCCCcEEEEEECCCeEEEEEcCC
Q 001343 452 GAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-LSGRKLFNFEGHEAPV-YSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1096)
Q Consensus 452 ~~v~~l~~s~d~~~~~l~s~s~d--~~i~iwd-~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (1096)
.....+.|++ +. +..+.+.+ ..|+.+| .+|+.+....-..... -.+++ .+ +.+....-.++.+.+||..+
T Consensus 21 ~ftqGL~~~~-~~--LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~-~~ly~ltw~~~~v~v~D~~t 94 (243)
T 3mbr_X 21 AFTEGLFYLR-GH--LYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WR-DRLIQLTWRNHEGFVYDLAT 94 (243)
T ss_dssp CCEEEEEEET-TE--EEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ET-TEEEEEESSSSEEEEEETTT
T ss_pred cccccEEEEC-CE--EEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eC-CEEEEEEeeCCEEEEEECCc
Confidence 3467899986 44 66676665 4899999 8999988876433321 23343 32 34555566789999999999
Q ss_pred CCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCc----cceEEEEEeCCCCEEEEE
Q 001343 528 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK----KSNGVVQFDTTQNHFLAV 603 (1096)
Q Consensus 528 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~ 603 (1096)
.+.+..+...... ..++ +++..|+.+. +++.|.++|..+.+.++++..... ..++.+.+. +|..++..
T Consensus 95 l~~~~ti~~~~~G-wglt--~dg~~L~vSd----gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv 166 (243)
T 3mbr_X 95 LTPRARFRYPGEG-WALT--SDDSHLYMSD----GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV 166 (243)
T ss_dssp TEEEEEEECSSCC-CEEE--ECSSCEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred CcEEEEEeCCCCc-eEEe--eCCCEEEEEC----CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence 9988887765432 3443 5677666653 378999999999999888765321 133445554 55544334
Q ss_pred EcCCeEEEEeCCCCeEEEEeecCC-----------CCCCccEEEEeCCCCEEEEEEC
Q 001343 604 GEDSQIKFWDMDNVNILTSTDAEG-----------GLPNLPRLRFSKEGNLLAVTTA 649 (1096)
Q Consensus 604 ~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~~ 649 (1096)
-.+..|.+.|..+++.+..+.... ...-.+.|+++|+++.|++.+.
T Consensus 167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 367899999999999998887431 1224688999998877777765
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.17 E-value=0.0039 Score=66.75 Aligned_cols=231 Identities=9% Similarity=0.002 Sum_probs=142.6
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCC----ceEEE-eeCCC
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG----RKLFN-FEGHE 494 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~----~~~~~-~~~~~ 494 (1096)
+|+.+. ...|+..|+.+.+... +......+..++|.+++.. ++++-..++.|..++..+ ..... +...-
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~----~~~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEEC-CCeEEEEECCCcceEe----hhcCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 344443 3578889988765433 2223456889999987663 555666678999999444 22222 22222
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
.....+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+.+... ..+.|...++..
T Consensus 77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG- 152 (316)
T 1ijq_A 77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNG- 152 (316)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTS-
T ss_pred CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCC-
Confidence 34577887543 33455566678899999987554444444344578899999977777665431 126888888754
Q ss_pred eeeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcE
Q 001343 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1096)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 653 (1096)
.....+....-.....+++++++..|+.+. ..+.|..+|++...................+++. .+.++++....+.|
T Consensus 153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V 231 (316)
T 1ijq_A 153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 231 (316)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeE
Confidence 333333222222567799999877777665 5679999999754333333322222245678885 45566666667888
Q ss_pred EEEEcCCC
Q 001343 654 KILANAIG 661 (1096)
Q Consensus 654 ~iwd~~~~ 661 (1096)
..++..++
T Consensus 232 ~~~~~~~g 239 (316)
T 1ijq_A 232 FSANRLTG 239 (316)
T ss_dssp EEEETTTC
T ss_pred EEEeCCCC
Confidence 88887666
No 280
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.13 E-value=0.0094 Score=63.76 Aligned_cols=231 Identities=12% Similarity=-0.005 Sum_probs=139.1
Q ss_pred CCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE-CCCeEEEEEccCC---Cc
Q 001343 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGS---ND 440 (1096)
Q Consensus 365 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~-~dg~i~vwd~~~~---~~ 440 (1096)
....|+..|+.+++... +......+..++|++++..|..+. .++.|..++.++. ..
T Consensus 8 ~~~~I~~i~~~~~~~~~--------------------~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~ 67 (316)
T 1ijq_A 8 NRHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS 67 (316)
T ss_dssp CBSSEEEEETTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------
T ss_pred CCCeEEEEECCCcceEe--------------------hhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcc
Confidence 45678888988765432 111234678999999776666554 4689999998762 22
Q ss_pred cccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEe-eCCCCCeEEEEeeecCCCcEEEEEEC-C-
Q 001343 441 LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF-EGHEAPVYSICPHHKENIQFIFSTAI-D- 517 (1096)
Q Consensus 441 ~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~-d- 517 (1096)
... .+...-.....+++.+.+.. +.++-...+.|.+.+..|+....+ .........+++.|. + ..|+.+.. .
T Consensus 68 ~~~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~-g~ly~~d~~~~ 142 (316)
T 1ijq_A 68 YDT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-H-GFMYWTDWGTP 142 (316)
T ss_dssp CEE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-T-TEEEEEECSSS
T ss_pred cEE--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-C-CEEEEEccCCC
Confidence 221 12222245678999876653 455666788999999666554443 323456788888764 2 34444443 3
Q ss_pred CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc-CccceEEEEEeCC
Q 001343 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF-RKKSNGVVQFDTT 596 (1096)
Q Consensus 518 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~ 596 (1096)
+.|...+++...........-.....+++++++..|+.+.. ..+.|..+|+............ .......+++. .
T Consensus 143 ~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~ 218 (316)
T 1ijq_A 143 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-E 218 (316)
T ss_dssp CEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-T
T ss_pred CeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-C
Confidence 68888887644333333333457889999998888877653 3678999998743322222221 11134456664 3
Q ss_pred CCEEEEEEcCCeEEEEeCCCCeEEEEee
Q 001343 597 QNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1096)
Q Consensus 597 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1096)
+..+++-...+.|..++..+++.+..+.
T Consensus 219 ~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 219 DKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp TEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred CEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 4444555567788888887776555553
No 281
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.08 E-value=0.0033 Score=68.32 Aligned_cols=226 Identities=10% Similarity=-0.049 Sum_probs=136.7
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1096)
++.++.........+.....+..++|++.+..++.+-...+.|..++...+..... +....
T Consensus 55 I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~-------------------~~~~~ 115 (349)
T 3v64_C 55 IRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV-------------------VSTGL 115 (349)
T ss_dssp EEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-------------------ECSSC
T ss_pred eEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE-------------------EeCCC
Confidence 44444333333444444556899999987765666666778999999876543210 11122
Q ss_pred CCEEEEEEcCCCCEEE-EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC-CcEEEEEcCC
Q 001343 407 ISVSRVAWSPDGNYVG-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-KLIKVWELSG 484 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d-~~i~iwd~~~ 484 (1096)
.....+++.+.+..|. +-...+.|.+.+.+.... .. .+...-.....+++.|.+.. ++++-... +.|...+.+|
T Consensus 116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~--l~~~~l~~P~~iavdp~~g~-ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KV--LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE--EECTTCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTS
T ss_pred CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EE--EEeCCCCCcceEEEecCcCe-EEEeccCCCCEEEEEeCCC
Confidence 3457889998655554 445567899999876432 21 12233456799999997664 44444444 7888888666
Q ss_pred ceEEEeeC-CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCC
Q 001343 485 RKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 485 ~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~ 563 (1096)
.....+.. .-.....+++.+. ++.+.++-...+.|..++++.................+++. +..++.+.. +.
T Consensus 192 ~~~~~~~~~~~~~PnGla~d~~-~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~---~~ 265 (349)
T 3v64_C 192 SGRRIIADTHLFWPNGLTIDYA-GRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDW---HT 265 (349)
T ss_dssp CSCEESCCSSCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEEET---TT
T ss_pred CCcEEEEECCCCCcceEEEeCC-CCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEecC---CC
Confidence 65555432 2334678998764 33445555567889999987544433343334456777773 334444332 26
Q ss_pred CeEEEEeCCCCeeeEEEc
Q 001343 564 SFLVEWNESEGTIKRTYA 581 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~ 581 (1096)
+.|..++..+|+....+.
T Consensus 266 ~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 266 KSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TEEEEEETTTCCSCEEEE
T ss_pred CeEEEEEccCCCccEEec
Confidence 677777766665555544
No 282
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.08 E-value=0.0021 Score=71.12 Aligned_cols=227 Identities=10% Similarity=-0.058 Sum_probs=137.5
Q ss_pred eeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCC
Q 001343 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1096)
Q Consensus 327 ~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1096)
++.++.........+.....+..++|++.+..++.+-...+.|..++...+..... +....
T Consensus 98 I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~-------------------~~~~~ 158 (386)
T 3v65_B 98 IRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV-------------------VSTGL 158 (386)
T ss_dssp EEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE-------------------ECSSC
T ss_pred ceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE-------------------EeCCC
Confidence 55554433444444445567899999987665677766778999999876543210 11122
Q ss_pred CCEEEEEEcCCCCEEEE-EECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC-CcEEEEEcCC
Q 001343 407 ISVSRVAWSPDGNYVGV-AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-KLIKVWELSG 484 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d-~~i~iwd~~~ 484 (1096)
.....+++++.+..|.. -...+.|.+.+++...... .+.........+++.|.+.. ++++-... +.|...+.+|
T Consensus 159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~---l~~~~l~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE---EECSSCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTS
T ss_pred CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE---eecCCCCCCcEEEEEcCCCe-EEEeccCCCCEEEEEeCCC
Confidence 34567889986555544 4456788888887543211 12233456799999987774 34444444 6788888666
Q ss_pred ceEEEee-CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCC
Q 001343 485 RKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1096)
Q Consensus 485 ~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~ 563 (1096)
.....+. ..-.....+++.+.. +.+.++-+..+.|..+|++.................+++. . ..++.+.. +.
T Consensus 235 ~~~~~~~~~~~~~PnGlavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~-~~ly~td~---~~ 308 (386)
T 3v65_B 235 SGRRIIADTHLFWPNGLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-E-DSLYWTDW---HT 308 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEEGGG-TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-T-TEEEEEET---TT
T ss_pred CCcEEEEECCCCCeeeEEEeCCC-CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-C-CEEEEeeC---CC
Confidence 6554443 223346789997643 3455555667889999887544433343334456777773 3 34444332 26
Q ss_pred CeEEEEeCCCCeeeEEEcC
Q 001343 564 SFLVEWNESEGTIKRTYAG 582 (1096)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~ 582 (1096)
+.|..++..+|+.+..+..
T Consensus 309 ~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 309 KSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp TEEEEEETTTCCSCEEEEC
T ss_pred CeEEEEECCCCcceEEEcc
Confidence 7787777666666555543
No 283
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.06 E-value=0.00029 Score=84.50 Aligned_cols=276 Identities=10% Similarity=-0.045 Sum_probs=148.7
Q ss_pred EEEEcC-CCCEEEEEECCC-----------eEEEEEccCCCccccceeec-ccccCEEEEEEecCCCcEEEEEEe-CCCc
Q 001343 411 RVAWSP-DGNYVGVAFTKH-----------LIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCG-DDKL 476 (1096)
Q Consensus 411 ~l~~sp-d~~~l~s~~~dg-----------~i~vwd~~~~~~~~~~~~l~-~h~~~v~~l~~s~d~~~~~l~s~s-~d~~ 476 (1096)
++++.+ +++.++.|+.+. .+.+||..+++-... ..+. .+.....++++..+++ +++.|+ .+..
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~-~~~~~~~~~~~~~~~~~~~g~--lyv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR-TVTVTKHDMFCPGISMDGNGQ--IVVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC-EEEECSCCCSSCEEEECTTSC--EEEECSSSTTC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeC-cccCCCCCCccccccCCCCCC--EEEeCCCCCCc
Confidence 556777 888888887543 588999988764322 1222 2333344577888898 788887 4568
Q ss_pred EEEEE-cCCceEEEeeCCCCCe-EEEEeeecCCCcEEEEEE-CC-----CeEEEEEcCCCCeeeEE-----eCCCCcEEE
Q 001343 477 IKVWE-LSGRKLFNFEGHEAPV-YSICPHHKENIQFIFSTA-ID-----GKIKAWLYDTMGSRVDY-----DAPGHWCTT 543 (1096)
Q Consensus 477 i~iwd-~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~~-~d-----g~i~iwd~~~~~~~~~~-----~~~~~~i~~ 543 (1096)
+.+|| .+++-...-..+..+- .+++..+ ++++++.|+ .+ ..+.+||..+..-...- ...... ..
T Consensus 267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~--dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~~ 343 (656)
T 1k3i_A 267 TSLYDSSSDSWIPGPDMQVARGYQSSATMS--DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-KQ 343 (656)
T ss_dssp EEEEEGGGTEEEECCCCSSCCSSCEEEECT--TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-TT
T ss_pred eEEecCcCCceeECCCCCccccccceEEec--CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-cc
Confidence 99999 6554332211122211 2233322 667888888 34 46889998765432210 000000 00
Q ss_pred EEEcCCCCEEEEEeecc-----CCCCeEEEEeCCCCeeeEEEcCcCc--------cceEEEEEeC-CCCEEEEEEcCC--
Q 001343 544 MLYSADGSRLFSCGTSK-----DGDSFLVEWNESEGTIKRTYAGFRK--------KSNGVVQFDT-TQNHFLAVGEDS-- 607 (1096)
Q Consensus 544 l~~s~~~~~l~~~~~~~-----~~~~~i~iwd~~~~~~~~~~~~~~~--------~~i~~~~~~~-~~~~l~~~~~dg-- 607 (1096)
..+..++...+.++.+. .....+..||..+............ ..-.++.+.. +++.+++|+.++
T Consensus 344 ~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~ 423 (656)
T 1k3i_A 344 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ 423 (656)
T ss_dssp GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence 11223444444444311 0145678899887664433222111 1223344544 566777777432
Q ss_pred ---------eEEEEeCCCCeEEEEeecCCCCCCc-cEEEEeCCCCEEEEEECC-----------CcEEEEEcCCCccccc
Q 001343 608 ---------QIKFWDMDNVNILTSTDAEGGLPNL-PRLRFSKEGNLLAVTTAD-----------NGFKILANAIGLRSLR 666 (1096)
Q Consensus 608 ---------~i~iwd~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~ 666 (1096)
.|.+||..+................ .+++..|++++++.|+.+ ..+.+||..++. . .
T Consensus 424 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~-W-~ 501 (656)
T 1k3i_A 424 DSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT-F-Y 501 (656)
T ss_dssp SSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE-E-E
T ss_pred CCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc-e-e
Confidence 6888888877655543111111122 455677899999999864 468899987652 1 1
Q ss_pred cccCCCcccccCcceeEEeecCCCeEEecC
Q 001343 667 AVENPPFEALRTPIESVALKVSASSAVSSG 696 (1096)
Q Consensus 667 ~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~ 696 (1096)
.+... ...+.......+.++|+.++.+.
T Consensus 502 ~~~~~--~~~R~~hs~a~ll~dg~v~v~GG 529 (656)
T 1k3i_A 502 KQNPN--SIVRVYHSISLLLPDGRVFNGGG 529 (656)
T ss_dssp ECCCC--SSCCCTTEEEEECTTSCEEEEEC
T ss_pred ecCCC--CCccccccHhhcCCCcEEEecCC
Confidence 11111 11122222344556777665554
No 284
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.02 E-value=0.0085 Score=66.44 Aligned_cols=231 Identities=9% Similarity=-0.003 Sum_probs=146.9
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCC-----ceEEEeeCCC
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG-----RKLFNFEGHE 494 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~-----~~~~~~~~~~ 494 (1096)
+|+.+. ...|+..++++..... +......+..++|.+.+.. ++++-...+.|+.++..+ .....+....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEec-cceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 454444 4688888888754332 2334567899999987663 445555678888888444 2222333234
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
.....+++.+. .+.+.++-...+.|.+.+++.................+++.|.+..|+.... ...+.|...++...
T Consensus 159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~--~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEEC--SSSCCEEEEETTSC
T ss_pred CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeC--CCCCEEEEEeCCCC
Confidence 45678888653 3455666667889999988766555555545556899999998777776542 11367888887654
Q ss_pred eeeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcE
Q 001343 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1096)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 653 (1096)
.....+...- .....+++++++..|+.+. ..+.|..+|++...................+++. .+.++.+-...+.|
T Consensus 236 ~~~~~~~~~l-~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 236 DIYSLVTENI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp SCEEEECSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred ccEEEEECCC-CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 4333333222 2567799998887777765 5678999998765544444432222345677773 34455566667888
Q ss_pred EEEEcCCC
Q 001343 654 KILANAIG 661 (1096)
Q Consensus 654 ~iwd~~~~ 661 (1096)
..++..++
T Consensus 314 ~~~~~~~G 321 (400)
T 3p5b_L 314 FSANRLTG 321 (400)
T ss_dssp EEEESSSC
T ss_pred EEEEcCCC
Confidence 88887777
No 285
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.97 E-value=0.018 Score=61.87 Aligned_cols=196 Identities=14% Similarity=0.058 Sum_probs=112.4
Q ss_pred CCeeeeeecCCCcEEEEecCCeEEEEEcccce-EEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeee
Q 001343 832 EAVPCIALSKNDSYVMSATGGKISLFNMMTFK-VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVW 910 (1096)
Q Consensus 832 ~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~-~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w 910 (1096)
..+..+.+.++++.++.+.+|.|..- ...|+ -......+...+..+++.+ ++.+++++...+.++-+|- .+. .|
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~-gG~--tW 196 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEP-GQT--AW 196 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECT-TCS--SC
T ss_pred CCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCC-CCC--ce
Confidence 34667888788888887776654321 12232 2222234556788999999 7877776644332232321 011 11
Q ss_pred eccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEEEEcccceeccccccC-CCCCCCceEEEEeeCCcE
Q 001343 911 SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQ-DALSAPISCAVYSCNSQL 989 (1096)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~i~~l~~s~dg~~ 989 (1096)
. .+... ... .+..+.+.+++..++++.++.+.+.+.+.|+.-..+... -.....+.++++.+++.+
T Consensus 197 ~----------~~~~~--~~~-~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~ 263 (327)
T 2xbg_A 197 E----------PHNRT--TSR-RLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEV 263 (327)
T ss_dssp E----------EEECC--SSS-CEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCE
T ss_pred e----------ECCCC--CCC-ccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEE
Confidence 1 11111 122 678899999998887788888887754445543333211 000345788999888887
Q ss_pred EEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEc
Q 001343 990 VFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVME 1058 (1096)
Q Consensus 990 la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~ 1058 (1096)
++++ .+|.| ++..+.|+.-..+.... . +...++ .+.|.+ + ..+++++.+|.|.-++
T Consensus 264 ~~~g-~~g~i-~~S~DgG~tW~~~~~~~----~---~~~~~~--~v~~~~-~-~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 264 WLAG-GAGAL-LCSQDGGQTWQQDVDVK----K---VPSNFY--KILFFS-P-DQGFILGQKGILLRYV 319 (327)
T ss_dssp EEEE-STTCE-EEESSTTSSCEECGGGT----T---SSSCCC--EEEEEE-T-TEEEEECSTTEEEEEC
T ss_pred EEEe-CCCeE-EEeCCCCcccEEcCccC----C---CCCCeE--EEEEEC-C-CceEEEcCCceEEEEc
Confidence 7755 46766 45566676443332111 0 122455 477765 4 4566677899887765
No 286
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.97 E-value=0.0013 Score=73.83 Aligned_cols=239 Identities=8% Similarity=0.123 Sum_probs=139.5
Q ss_pred CEEEEEEcC-CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC-CC----cEEEEE
Q 001343 408 SVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DK----LIKVWE 481 (1096)
Q Consensus 408 ~V~~l~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~-d~----~i~iwd 481 (1096)
....|+++| ++..|.++...+.|+.+|.+++.... +.........++|+++++ .|+.+.. ++ .+.+.+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~----~~~~~~~P~~ia~d~~G~--~lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST----VYSGLSKVRTICWTHEAD--SMIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE----EECCCSCEEEEEECTTSS--EEEEEECCSCTTSEEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE----EecCCCCcceEEEeCCCC--EEEEEeCCCCcccceEEEEe
Confidence 467899998 46667666655889999988754322 333455689999999998 4444443 22 344444
Q ss_pred cCCceE--EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC-CCCcEEEEEEcCCCCEEEEEee
Q 001343 482 LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 482 ~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~ 558 (1096)
..+... ..+.. ......++++|. ++.++++-..++.|..++............ .......++|+|+|++|+.+..
T Consensus 212 ~~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 212 RESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp GGGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred CCCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence 444332 23321 223456777553 455666666778999999876554222222 2235788999999997766543
Q ss_pred ccCCCCeEEEEeCCC--Cee--eEEEcCc------Cc--------cceE-EEEEe--------CCCCEEEEEEcCCeEEE
Q 001343 559 SKDGDSFLVEWNESE--GTI--KRTYAGF------RK--------KSNG-VVQFD--------TTQNHFLAVGEDSQIKF 611 (1096)
Q Consensus 559 ~~~~~~~i~iwd~~~--~~~--~~~~~~~------~~--------~~i~-~~~~~--------~~~~~l~~~~~dg~i~i 611 (1096)
..+.|..++... +.. ...+.+. .. .... .++.. +++..+++=...+.|+.
T Consensus 290 ---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 290 ---NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp ---TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred ---CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 277888877542 322 2222221 00 0122 35553 33444444456678988
Q ss_pred EeCCCCeEEEEeec---------CC------CCCCccEEEEeCC-CCEEEEEECCCcEEEEEc
Q 001343 612 WDMDNVNILTSTDA---------EG------GLPNLPRLRFSKE-GNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 612 wd~~~~~~~~~~~~---------~~------~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~ 658 (1096)
++. .+........ .+ .......++++|+ +.++++-...+.|+.+++
T Consensus 367 i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 367 LTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp ECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred ECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 884 5554433321 00 0124678999994 555555555677877765
No 287
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.96 E-value=0.00069 Score=82.45 Aligned_cols=200 Identities=7% Similarity=-0.019 Sum_probs=111.7
Q ss_pred ccCCC-CEEEEEEc-CCCCEEEEEEC-CC----eEEEEEccCC-CccccceeecccccCEEEEEEecCCCcEEEEEEeCC
Q 001343 403 KDVPI-SVSRVAWS-PDGNYVGVAFT-KH----LIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1096)
Q Consensus 403 ~~h~~-~V~~l~~s-pd~~~l~s~~~-dg----~i~vwd~~~~-~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d 474 (1096)
.+|.- .+...+|| |||++||.+.. +| .|+++|+.++ +.+.. .+. .....++|+|||+ .|+....|
T Consensus 169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~---~~~~~~~WspDg~--~l~y~~~d 241 (751)
T 2xe4_A 169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVS---GTNGEIVWGPDHT--SLFYVTKD 241 (751)
T ss_dssp TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEE---EECSCCEECSSTT--EEEEEEEC
T ss_pred cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--ccc---CceeeEEEecCCC--EEEEEEEC
Confidence 34543 78899999 99999986543 22 5999999998 63321 121 1235789999998 45444444
Q ss_pred -----CcEEEEE-cCCce--EEEeeC-CCCCeEEEEeeecCCCcEEEEEEC---CCeEEEEEcCCCC-ee--eEEe-CCC
Q 001343 475 -----KLIKVWE-LSGRK--LFNFEG-HEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMG-SR--VDYD-APG 538 (1096)
Q Consensus 475 -----~~i~iwd-~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~-~~--~~~~-~~~ 538 (1096)
..|++++ .++.. ...+.. .......+.|++ ||++|+..+. ...|.++|+.+.. .. ..+. ...
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~ 319 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA--DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK 319 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT--TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC--CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence 2577777 44431 223332 223455667755 6777776553 3467788887653 22 2222 223
Q ss_pred CcEEEEEEcCCCCEEEEEeecc-CCCCeEEEEeCCCC-eeeE-EEcCcCccceEEEEEeCCCCEE-EEEEcCCe--EEEE
Q 001343 539 HWCTTMLYSADGSRLFSCGTSK-DGDSFLVEWNESEG-TIKR-TYAGFRKKSNGVVQFDTTQNHF-LAVGEDSQ--IKFW 612 (1096)
Q Consensus 539 ~~i~~l~~s~~~~~l~~~~~~~-~~~~~i~iwd~~~~-~~~~-~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~--i~iw 612 (1096)
....++.|+. |..|+..+... .+...|+.+++.++ +... .+.......+..+.+ .++.| ++...++. |+++
T Consensus 320 ~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 320 GVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp TCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEEE
T ss_pred CceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEE
Confidence 3445555433 66665554322 23568888888753 3222 233322213344444 44454 55566675 5556
Q ss_pred eC
Q 001343 613 DM 614 (1096)
Q Consensus 613 d~ 614 (1096)
++
T Consensus 397 dl 398 (751)
T 2xe4_A 397 MA 398 (751)
T ss_dssp EC
T ss_pred ec
Confidence 65
No 288
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.93 E-value=0.0077 Score=61.12 Aligned_cols=206 Identities=12% Similarity=0.101 Sum_probs=131.6
Q ss_pred eecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeC-CCCCeEEEEeeecCCCcEEEEEECCCeEEEEE
Q 001343 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1096)
Q Consensus 446 ~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 524 (1096)
.+.+-.+.+..++|+|++.. ++++...++.|...|.+++.+..+.- -....-.+++. +++.++++.-.++.+.+++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~-L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~--~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNT-LFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYI--GDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTE-EEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEEC--STTEEEEEETTTTEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCE-EEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEe--CCCEEEEEECCCCcEEEEE
Confidence 35566678999999998774 44456668899999966988887742 22456777775 4666666666678899998
Q ss_pred cCCCCee---eEEe------CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC-CCCeeeEEEcC------cCccce
Q 001343 525 YDTMGSR---VDYD------APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE-SEGTIKRTYAG------FRKKSN 588 (1096)
Q Consensus 525 ~~~~~~~---~~~~------~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~-~~~~~~~~~~~------~~~~~i 588 (1096)
+...... .... ..+.....++++|.++.|+++... ....|+.|+- .....+..+.. ..-...
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~--~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK--NPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES--SSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc--CCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 8765531 1221 123357899999999888877641 1225656651 11111222211 111246
Q ss_pred EEEEEeCCCCEEEE-EEcCCeEEEEeCCCCeEEEEeecCCC-------CCCccEEEEeCCCCEEEEEECCCcEEEEEc
Q 001343 589 GVVQFDTTQNHFLA-VGEDSQIKFWDMDNVNILTSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1096)
Q Consensus 589 ~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 658 (1096)
..++++|....+++ ...++.+.++|.. ++.+..+..... ......|+|.++|++.++ +..+.++.|..
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 77999997665555 4567789999975 556666655432 235678999999985554 66666666643
No 289
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.92 E-value=0.011 Score=65.39 Aligned_cols=233 Identities=9% Similarity=-0.030 Sum_probs=136.5
Q ss_pred ceeeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCcccccccccc
Q 001343 325 HQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1096)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1096)
+.+..++.........+..-..+..++|++.+..++.+-...+.|..+++........ ...++..
T Consensus 92 ~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~---------------~~~~~~~ 156 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------------YDTVISR 156 (400)
T ss_dssp TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CC---------------CEEEECS
T ss_pred ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCc---------------ceEEEeC
Confidence 3355555444444444556678999999997665666666678899998865321000 0001222
Q ss_pred CCCCEEEEEEcCCCCEEE-EEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEE-eCCCcEEEEEc
Q 001343 405 VPISVSRVAWSPDGNYVG-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWEL 482 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~-s~d~~i~iwd~ 482 (1096)
.-.....+++.+.+..|. +-...+.|.+.++++..... .+...-.....+++.|.+.. ++++- +..+.|...+.
T Consensus 157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~---l~~~~~~~P~~iavdp~~g~-ly~td~~~~~~I~~~~~ 232 (400)
T 3p5b_L 157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT---LFRENGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGL 232 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEE---EEECSSCCEEEEEEETTTTE-EEEEECSSSCCEEEEET
T ss_pred CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEE---EEeCCCCCcceEEEecccCe-EEEEeCCCCCEEEEEeC
Confidence 344678999998555554 44556899999987643222 12233445889999997763 33333 23477888887
Q ss_pred CCceEEEee-CCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC--CCCcEEEEEEcCCCCEEEEEeec
Q 001343 483 SGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--PGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 483 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
+|.....+. ..-.....+++.+.. +.+.++-...+.|..+|++.......... .......+++ ++..++....
T Consensus 233 dG~~~~~~~~~~l~~P~glavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~- 308 (400)
T 3p5b_L 233 NGVDIYSLVTENIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDI- 308 (400)
T ss_dssp TSCSCEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEEES-
T ss_pred CCCccEEEEECCCCceEEEEEEeCC-CEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEecC-
Confidence 776555443 233457889987643 33444445678899999875444333332 1234556666 3334444332
Q ss_pred cCCCCeEEEEeCCCCeeeEEEcC
Q 001343 560 KDGDSFLVEWNESEGTIKRTYAG 582 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~ 582 (1096)
+.+.|..+|..+|+.+..+..
T Consensus 309 --~~~~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 309 --INEAIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp --SSCSEEEEESSSCCCCEEEEC
T ss_pred --CCCeEEEEEcCCCCceEEEec
Confidence 266788888777766665543
No 290
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.91 E-value=0.028 Score=57.80 Aligned_cols=238 Identities=13% Similarity=0.133 Sum_probs=148.8
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCC
Q 001343 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1096)
Q Consensus 349 ~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg 428 (1096)
+.-.+|..+ ++|.-. ..++.|+|+++.+.+..+. -...|..=.|-.+ +.|+..+ +.
T Consensus 71 sAIMnP~~~-ViALra-g~~LQiFnletK~klks~~--------------------~~e~VvfWkWis~-~~L~lVT-~t 126 (365)
T 2xzh_A 71 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISL-NTVALVT-DN 126 (365)
T ss_dssp EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEE--------------------CSSCEEEEEECSS-SEEEEEE-SS
T ss_pred eeeeCCCcc-EEEEec-CCeEEEechHHhhhhccee--------------------cCCccEEEEecCC-CeEEEEc-CC
Confidence 344588887 677654 7899999999988775422 1346766677644 4555444 35
Q ss_pred eEEEEEccCCCccccceeeccc----ccCEEEEEEecCCCcEEEEEEe------CCCcEEEEEcCCceEEEeeCCCCCeE
Q 001343 429 LIQLYSYAGSNDLRQHSQIDAH----VGAVNDLAFAYPNKLLCVVTCG------DDKLIKVWELSGRKLFNFEGHEAPVY 498 (1096)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~l~~h----~~~v~~l~~s~d~~~~~l~s~s------~d~~i~iwd~~~~~~~~~~~~~~~v~ 498 (1096)
.|.-|++++...... .+..| ...|..-..+++.+. ++++|- -.|.+.+|..+.+.-+.+.||.+...
T Consensus 127 aVyHWs~~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~ 203 (365)
T 2xzh_A 127 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 203 (365)
T ss_dssp EEEEEESSTTCCCEE--EEECCGGGTTCEEEEEEECTTSCE-EEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEE
T ss_pred cEEEEcccCCCCCce--eeecchhcccceEEEEEECCCCCE-EEEEeEeccCCccceeEEEEeecccccceeeeeeeeeE
Confidence 899999986433322 22222 346777788888886 333332 23788999977777788888876554
Q ss_pred EEEeeecCC-CcEEEEEEC---CCeEEEEEcCCC---Cee-----eEEeC----CCCcEEEEEEcCCCCEEEEEeeccCC
Q 001343 499 SICPHHKEN-IQFIFSTAI---DGKIKAWLYDTM---GSR-----VDYDA----PGHWCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 499 ~~~~~~~~~-~~~l~s~~~---dg~i~iwd~~~~---~~~-----~~~~~----~~~~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
.+.+..... ..+++.+.. .+.+++-++... ... ..+.. ..+-..++.+|+.-..++..+.
T Consensus 204 ~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK---- 279 (365)
T 2xzh_A 204 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 279 (365)
T ss_dssp EECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC----
Confidence 443321111 123333322 268899988543 111 11111 1335667888888888888876
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1096)
-|.+++||++++.++..-+-..+ .+...+......-++.....|.|.-..++...
T Consensus 280 ~G~ihlyDleTgt~i~~nrIS~d-~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 280 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-CEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred CcEEEEEEcccCcEEEEeccCCC-ceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 99999999999999877665555 55544554454556666677766666555443
No 291
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.90 E-value=0.01 Score=63.24 Aligned_cols=233 Identities=10% Similarity=0.023 Sum_probs=142.1
Q ss_pred CCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEE-ECCCeEEEEEccCCCcccc
Q 001343 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLRQ 443 (1096)
Q Consensus 365 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~-~~dg~i~vwd~~~~~~~~~ 443 (1096)
....|+..++........ + +......+..++|++.+..|..+ ...+.|..++.+++.....
T Consensus 11 ~~~~I~~i~l~~~~~~~~--~----------------~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~ 72 (318)
T 3sov_A 11 NRRDLRLVDATNGKENAT--I----------------VVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN 72 (318)
T ss_dssp CEEEEEEEETTCTTSCCE--E----------------EEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE
T ss_pred ccCeEEEEECCCCceEEE--E----------------EecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE
Confidence 457899999876531110 0 11112356789999965555544 4567899999887632221
Q ss_pred ceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEee-CCCCCeEEEEeeecCCCcEEEEEE--CCCeE
Q 001343 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTA--IDGKI 520 (1096)
Q Consensus 444 ~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i 520 (1096)
.+...-.....+++.+.+.. +.++-...+.|.+++.+|.....+. ........+++.|.. ..|+.+. ..+.|
T Consensus 73 --~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~--g~ly~td~~~~~~I 147 (318)
T 3sov_A 73 --VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS--GFMYWTDWGEVPKI 147 (318)
T ss_dssp --EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG--TEEEEEECSSSCEE
T ss_pred --EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC--CEEEEEecCCCCEE
Confidence 12222345678999876553 5556666789999996665544443 344557888887642 3455444 35788
Q ss_pred EEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEE
Q 001343 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1096)
Q Consensus 521 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 600 (1096)
...+++...........-.....+++++++..|+.+.. ..+.|..+|+........+.+... ....+++.. +..+
T Consensus 148 ~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~~-~P~glav~~-~~ly 222 (318)
T 3sov_A 148 ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFE-DILY 222 (318)
T ss_dssp EEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCCS-CEEEEEEET-TEEE
T ss_pred EEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCCC-CceEEEEeC-CEEE
Confidence 88887644333333333446789999998888877653 377899999865433333332222 344566643 3444
Q ss_pred EEEEcCCeEEEEeCCCCeEEEEeec
Q 001343 601 LAVGEDSQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 601 ~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1096)
++-...+.|..++..+++....+..
T Consensus 223 wtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 223 WTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEEC
T ss_pred EEecCCCeEEEEECCCCCceEEEeC
Confidence 4544677888888877776555543
No 292
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.87 E-value=0.0033 Score=70.45 Aligned_cols=239 Identities=8% Similarity=0.104 Sum_probs=139.3
Q ss_pred CEEEEEEcCC--CCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC---Cc-EEEEE
Q 001343 408 SVSRVAWSPD--GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD---KL-IKVWE 481 (1096)
Q Consensus 408 ~V~~l~~spd--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d---~~-i~iwd 481 (1096)
....|+|+|+ +..|..+...+.|+.+|..++.... +.........++|+++|+ ++++.... .. +...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~----~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI----KTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE----ECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEEC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE----eecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEEE
Confidence 4678999995 4555555444899999987765432 333455689999999999 56655422 22 33334
Q ss_pred cCCceE--EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEeC-CCCcEEEEEEcCCCCEEEEEe
Q 001343 482 LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDA-PGHWCTTMLYSADGSRLFSCG 557 (1096)
Q Consensus 482 ~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~-~~~~i~~l~~s~~~~~l~~~~ 557 (1096)
..+... ..+. .......+++.+. ++.+.++-..++.|+.+|..++.... .... .......++++|+++.|+.+.
T Consensus 214 ~~~~~~~~~~~~-~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 214 RASGFTERLSLC-NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp GGGTTCCEEEEE-ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred CCCCeecccccc-ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 222211 1121 1223455666552 44555565567889999887665522 2221 222345799999999777664
Q ss_pred eccCCCCeEEEEeCC--CCee--eEEEcCc------C--------ccceEEEEE---------eCCCCEEEEEEcCCeEE
Q 001343 558 TSKDGDSFLVEWNES--EGTI--KRTYAGF------R--------KKSNGVVQF---------DTTQNHFLAVGEDSQIK 610 (1096)
Q Consensus 558 ~~~~~~~~i~iwd~~--~~~~--~~~~~~~------~--------~~~i~~~~~---------~~~~~~l~~~~~dg~i~ 610 (1096)
. ..+.|+.++.. ++.. ...+.+. . -.....+++ .++++++++-...+.|+
T Consensus 292 ~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~ 368 (433)
T 4hw6_A 292 N---GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVR 368 (433)
T ss_dssp T---TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEE
T ss_pred C---CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEE
Confidence 3 36789887765 3322 1222221 0 012455888 66666666656778899
Q ss_pred EEeCCCCeEEEEeecCCC----------------CCCccEEEEe-CCCCEEEEEECCCcEEEEEcC
Q 001343 611 FWDMDNVNILTSTDAEGG----------------LPNLPRLRFS-KEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 611 iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
.++. ++... .+.+... ......++++ +++.++++-...+.|+.++++
T Consensus 369 ~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 369 VLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 9985 55443 3322211 1235678998 566666665566778777653
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.76 E-value=0.029 Score=67.49 Aligned_cols=231 Identities=9% Similarity=0.001 Sum_probs=143.5
Q ss_pred EEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCc-----eEEEeeCCC
Q 001343 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR-----KLFNFEGHE 494 (1096)
Q Consensus 420 ~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~-----~~~~~~~~~ 494 (1096)
+|+.+ ....|+..++....... +......+..++|.+.+.. ++++-...+.|+.++..+. ....+....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~----l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred ccccc-cccceeEeeccCCccee----eecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 44433 34578888887654322 3334567889999986663 5556666788888885442 223333234
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1096)
.....|++.+.. +.++++-...+.|.+.+++.................|++.|.+..|+..... ....|...++...
T Consensus 471 ~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceeeeeecC-CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC--CCCeEEEEecCCC
Confidence 456678886542 3556666678899999988655544444455578999999987777766431 1367888888654
Q ss_pred eeeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcE
Q 001343 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1096)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 653 (1096)
.....+...- .....+++++.+..|+.+. ..+.|..++++.......+...........|++..+ .++++-...+.|
T Consensus 548 ~~~~lv~~~l-~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I 625 (791)
T 3m0c_C 548 DIYSLVTENI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAI 625 (791)
T ss_dssp CEEEEECSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEE
T ss_pred ceEEEEeCCC-CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEE
Confidence 4433333222 2567799998777777765 557899999976655555543332223456666433 344444456778
Q ss_pred EEEEcCCC
Q 001343 654 KILANAIG 661 (1096)
Q Consensus 654 ~iwd~~~~ 661 (1096)
...+..++
T Consensus 626 ~~~dk~tG 633 (791)
T 3m0c_C 626 FSANRLTG 633 (791)
T ss_dssp EEEETTTC
T ss_pred EEEeCCCC
Confidence 88887666
No 294
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.74 E-value=0.023 Score=60.51 Aligned_cols=225 Identities=8% Similarity=-0.004 Sum_probs=137.8
Q ss_pred CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCce--EEEeeCCCCCeEEEEeee
Q 001343 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK--LFNFEGHEAPVYSICPHH 504 (1096)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~ 504 (1096)
...|+.+++++...... .+......+..++|.+.+.. ++.+-...+.|..++..+.. ...+...-.....+++.+
T Consensus 12 ~~~I~~i~l~~~~~~~~--~~~~~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~ 88 (318)
T 3sov_A 12 RRDLRLVDATNGKENAT--IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEEETTCTTSCCE--EEEEEEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred cCeEEEEECCCCceEEE--EEecCCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence 46899999987541111 11122345778999986663 55566667889999944331 112222223456777754
Q ss_pred cCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC
Q 001343 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1096)
Q Consensus 505 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 584 (1096)
. ++.+.++-...+.|.+++++.................+++.|.+..|+.+.. ...+.|...++.... ...+....
T Consensus 89 ~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~--~~~~~I~r~~~dG~~-~~~~~~~~ 164 (318)
T 3sov_A 89 L-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW--GEVPKIERAGMDGSS-RFIIINSE 164 (318)
T ss_dssp T-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEEC--SSSCEEEEEETTSCS-CEEEECSS
T ss_pred C-CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEec--CCCCEEEEEEcCCCC-eEEEEECC
Confidence 3 3455566667789999998765444444344457889999998777766542 125678888876433 23332111
Q ss_pred ccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 585 KKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 585 ~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
-.....+++++++..|+.+. ..+.|..++++........... ......+++.. +.++.+-...+.|..++..++
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFE-DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC--CCCceEEEEeC-CEEEEEecCCCeEEEEECCCC
Confidence 22457799999777776665 5678999998754433333312 23567788753 345555556778888888776
No 295
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.72 E-value=0.0055 Score=68.68 Aligned_cols=235 Identities=12% Similarity=0.076 Sum_probs=132.4
Q ss_pred CceEEEEEcCC---CCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001343 345 STVISMDFHPS---HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1096)
Q Consensus 345 ~~V~~v~fsp~---g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 421 (1096)
.....++|+|+ |. |+++ ...+.|+.+|..++.... +.........++|+++|+ |
T Consensus 139 ~~P~gvavd~~s~~g~-Lyv~-D~~~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~-l 195 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDD-LYWV-GQRDAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGD-M 195 (433)
T ss_dssp SCCCEEEECTTTTTCE-EEEE-CBTSCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCC-E
T ss_pred CCCceEEEccccCCCE-EEEE-eCCCCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCC-E
Confidence 35679999995 54 4444 333899999987776542 222345689999999999 4
Q ss_pred EEEECC----C-eEEEEEccCCCccccceeecccccCEEEEEEec-CCCcEEEEEEeCCCcEEEEE-cCCceEEEe-eC-
Q 001343 422 GVAFTK----H-LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EG- 492 (1096)
Q Consensus 422 ~s~~~d----g-~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~-d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-~~- 492 (1096)
.++... . .+...+...+.... ..+. .......+++.| ++. +.++-..++.|+.+| .++.....+ ..
T Consensus 196 yVad~~~~~~~~gv~~~~~~~~~~~~--~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~ 270 (433)
T 4hw6_A 196 VVVDDQSSDTNTGIYLFTRASGFTER--LSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMD 270 (433)
T ss_dssp EEEECCSCTTSEEEEEECGGGTTCCE--EEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECS
T ss_pred EEEcCCCCcccceEEEEECCCCeecc--cccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccC
Confidence 444432 1 23333333221100 0111 234456788999 565 556666678899999 557652332 21
Q ss_pred CCCCeEEEEeeecCCCc-EEEEEECCCeEEEEEcCCCCe----eeEEeCC---------------CCcEEEEEE------
Q 001343 493 HEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGS----RVDYDAP---------------GHWCTTMLY------ 546 (1096)
Q Consensus 493 ~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~----~~~~~~~---------------~~~i~~l~~------ 546 (1096)
....-..+++++ +++ ++++-...+.|+.++++.... ...+... -.....+++
T Consensus 271 ~~~~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y 348 (433)
T 4hw6_A 271 TKGSNFHIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAY 348 (433)
T ss_dssp CCSSCEEEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGG
T ss_pred CCCCcccEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccc
Confidence 122234688866 556 444555678999988763211 1122111 123567888
Q ss_pred ---cCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC--------c---------cceEEEEEe-CCCCEEEEEEc
Q 001343 547 ---SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR--------K---------KSNGVVQFD-TTQNHFLAVGE 605 (1096)
Q Consensus 547 ---s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--------~---------~~i~~~~~~-~~~~~l~~~~~ 605 (1096)
.++|.+.++-.. .+.|+.++. +|... ++.+.. . .....++++ +++..+++=..
T Consensus 349 ~~dd~~g~lyvaD~~----n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~ 422 (433)
T 4hw6_A 349 AGEEDEYDFYFCDRD----SHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCD 422 (433)
T ss_dssp TTSSCCEEEEEEETT----TTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred cccCCCCcEEEEECC----CCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCC
Confidence 666665555432 778888885 55433 333211 0 124567888 44444444445
Q ss_pred CCeEEEEeCC
Q 001343 606 DSQIKFWDMD 615 (1096)
Q Consensus 606 dg~i~iwd~~ 615 (1096)
++.|+.++++
T Consensus 423 n~rIr~i~~e 432 (433)
T 4hw6_A 423 NHRVRKIAPE 432 (433)
T ss_dssp GTEEEEEEEC
T ss_pred CCEEEEEecC
Confidence 6677776653
No 296
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.72 E-value=0.0096 Score=66.70 Aligned_cols=155 Identities=10% Similarity=0.074 Sum_probs=94.2
Q ss_pred CceEEEEEcC-CCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001343 345 STVISMDFHP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1096)
Q Consensus 345 ~~V~~v~fsp-~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 423 (1096)
.....++++| ++..++++ ...+.|+.+|..++.... +.........|+|+++|++|++
T Consensus 137 ~~P~~lavdp~~~g~Lyv~-d~~~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyv 195 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLV-GEQHPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMII 195 (430)
T ss_dssp SCCCEEEEETTEEEEEEEE-EBTEEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEE
T ss_pred CCCCEEEECCCCCCeEEEE-eCCCcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEE
Confidence 3568899998 34434444 334889999987765432 1223456889999999997766
Q ss_pred EECC-C----eEEEEEccCCCccccceeecccccCEEEEEEec-CCCcEEEEEEeCCCcEEEEEcCCceEEEe-eC-CCC
Q 001343 424 AFTK-H----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWELSGRKLFNF-EG-HEA 495 (1096)
Q Consensus 424 ~~~d-g----~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~-d~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~-~~~ 495 (1096)
+... + .+.+++.. +..... ..+. .......++++| ++. ++++-..++.|..++..+.....+ .. ...
T Consensus 196 ad~~~~~~~~~v~~~~~~-g~~~~~-~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 196 TNDQNNNDRPNNYILTRE-SGFKVI-TELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp EECCSCTTSEEEEEEEGG-GTSCSE-EEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred EeCCCCcccceEEEEeCC-Cceeee-eeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 6542 1 34434433 322210 1222 123467788999 565 666666788999999444433222 21 223
Q ss_pred CeEEEEeeecCCCcE-EEEEECCCeEEEEEcCC
Q 001343 496 PVYSICPHHKENIQF-IFSTAIDGKIKAWLYDT 527 (1096)
Q Consensus 496 ~v~~~~~~~~~~~~~-l~s~~~dg~i~iwd~~~ 527 (1096)
....+++++ ++++ +++-...+.|..++.+.
T Consensus 271 ~P~gia~~p--dG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 271 WEFHIQFHP--SGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp CCEEEEECT--TSSEEEEEETTTTEEEEEEEET
T ss_pred cceeEEEcC--CCCEEEEEECCCCEEEEEeCCc
Confidence 467888876 5564 45555678899988764
No 297
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.72 E-value=0.029 Score=67.43 Aligned_cols=212 Identities=11% Similarity=0.002 Sum_probs=129.4
Q ss_pred CCCCEEEEEEcCCCCEEEEE-ECCCeEEEEEccCCCcc-ccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEc
Q 001343 405 VPISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL 482 (1096)
Q Consensus 405 h~~~V~~l~~spd~~~l~s~-~~dg~i~vwd~~~~~~~-~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~ 482 (1096)
....+..|+|++.+..|... ...+.|+.+++...... .....+.........|++.+.+.. +.++-...+.|.+.+.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 500 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeC
Confidence 34567899999966655544 45578998988753211 011123334456778999988764 5566667889999997
Q ss_pred CCceEEEee-CCCCCeEEEEeeecCCCcEEEEEE-CC-CeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeec
Q 001343 483 SGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTA-ID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1096)
Q Consensus 483 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~-~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~ 559 (1096)
+|.....+. ........|++.|.. ..|+... .. +.|...+++...........-.....|++++.+..|+.+-.
T Consensus 501 dG~~~~~l~~~~l~~P~gIaVDp~~--g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~- 577 (791)
T 3m0c_C 501 KGVKRKTLFRENGSKPRAIVVDPVH--GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS- 577 (791)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETTT--TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET-
T ss_pred CCCeEEEEEeCCCCCcceEEEecCC--CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC-
Confidence 776655553 334457889987642 3444444 33 77888888755544444444457899999988888887643
Q ss_pred cCCCCeEEEEeCCCCeeeEEEcCcCc-cceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEee
Q 001343 560 KDGDSFLVEWNESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTD 624 (1096)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 624 (1096)
+...|...++........+..... .....+++. +..|+.+. ..+.|...+..+++.+..+.
T Consensus 578 --~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 578 --KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp --TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred --CCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 367899999865544444332111 123345543 33444443 56777777777766555553
No 298
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.72 E-value=0.0092 Score=62.82 Aligned_cols=185 Identities=12% Similarity=0.191 Sum_probs=120.5
Q ss_pred EEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEEEEeeecC--CCc---EEEEEE-C--CCeEEEEEcCCCC-eeeEEeC-
Q 001343 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKE--NIQ---FIFSTA-I--DGKIKAWLYDTMG-SRVDYDA- 536 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~---~l~s~~-~--dg~i~iwd~~~~~-~~~~~~~- 536 (1096)
+++.....+-+.+||.+|+.+..+.. +.++.+.+-+.- .|. ++++.. . +++|++|+++... .+.....
T Consensus 42 ~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~ 119 (355)
T 3amr_A 42 KLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDP 119 (355)
T ss_dssp EEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCT
T ss_pred EEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccc
Confidence 56666778899999999999998864 567777765521 111 233333 3 5799999885222 2333311
Q ss_pred -----CC-CcEEEEEE--cCC-CC-EEEEEeeccCCCCeEEEEeCC-------CCeeeEEEcCcCccceEEEEEeCCCCE
Q 001343 537 -----PG-HWCTTMLY--SAD-GS-RLFSCGTSKDGDSFLVEWNES-------EGTIKRTYAGFRKKSNGVVQFDTTQNH 599 (1096)
Q Consensus 537 -----~~-~~i~~l~~--s~~-~~-~l~~~~~~~~~~~~i~iwd~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~ 599 (1096)
.. ..+..+++ ++. ++ ++++... ++.+..|++. +.+.+++|.... .+..|...+....
T Consensus 120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd~~g~ 193 (355)
T 3amr_A 120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADDEYGR 193 (355)
T ss_dssp TSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEETTTTE
T ss_pred ccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcCCCCe
Confidence 11 45667777 774 44 4555544 7888888872 446778877654 5667888898899
Q ss_pred EEEEEcCCeEEEEeCC-----CCeEEEEeecCCCCCCccEEEE--eCCCC-EEEEEE-CCCcEEEEEcC
Q 001343 600 FLAVGEDSQIKFWDMD-----NVNILTSTDAEGGLPNLPRLRF--SKEGN-LLAVTT-ADNGFKILANA 659 (1096)
Q Consensus 600 l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~~~~--s~~~~-~l~~~~-~dg~i~iwd~~ 659 (1096)
|+.+-++..|..++.+ +++.+..+....-...+..|++ .++++ +|++++ .+.++.+||..
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999999877777755 3455555433222225777887 45555 555555 57799999986
No 299
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.70 E-value=0.014 Score=65.44 Aligned_cols=244 Identities=10% Similarity=0.109 Sum_probs=141.2
Q ss_pred CEEEEEEcC-CCCEEEEEEC-CCeEEEEEccCCCccccceee-cccccCEEEEEE-------ecCCCcEEEEEEeCCC--
Q 001343 408 SVSRVAWSP-DGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQI-DAHVGAVNDLAF-------AYPNKLLCVVTCGDDK-- 475 (1096)
Q Consensus 408 ~V~~l~~sp-d~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~l-~~h~~~v~~l~~-------s~d~~~~~l~s~s~d~-- 475 (1096)
....|+|+| ++..|.++.. .+.|++.|.+++.... +... .........++| ++++. .|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~--~lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAE--YMIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTC--EEEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCC--EEEEEeCCCCC
Confidence 477899999 4555555544 4678888988754432 1111 112335899999 99998 455444433
Q ss_pred -----cEEEEE-cC-CceE-----EEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcC-------CCCe------
Q 001343 476 -----LIKVWE-LS-GRKL-----FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-------TMGS------ 530 (1096)
Q Consensus 476 -----~i~iwd-~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-------~~~~------ 530 (1096)
.|.+.+ .. |... ..+.... ....++++|. ++.++++-..++.|..+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 366776 32 2321 2222111 2346666653 34566667788899999987 4443
Q ss_pred -----e-eEEe-CCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeC--CCCee--eEEEcCc---Cc-----------
Q 001343 531 -----R-VDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE--SEGTI--KRTYAGF---RK----------- 585 (1096)
Q Consensus 531 -----~-~~~~-~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~--~~~~~--~~~~~~~---~~----------- 585 (1096)
. ..+. ........++|+|+|+.|+.+.. ..+.|+.++. ..+.. ...+.+. .+
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 1 1122 22345689999999997666543 3778888554 33332 1223221 00
Q ss_pred cceE-EEEEe-------CCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCC----------------------CCCCccEE
Q 001343 586 KSNG-VVQFD-------TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG----------------------GLPNLPRL 635 (1096)
Q Consensus 586 ~~i~-~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~v~~~ 635 (1096)
.... .++.. +++.++++=...+.|+.++ .++. +.++.+.. .......|
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 0122 45554 4555555556778999998 4554 33443221 01235678
Q ss_pred EEeCC-CCEEEEEECCCcEEEEEcCCC
Q 001343 636 RFSKE-GNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 636 ~~s~~-~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
+++++ +.++++-...+.|+.+++...
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 99986 666666666778888887554
No 300
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.61 E-value=0.053 Score=58.07 Aligned_cols=238 Identities=13% Similarity=0.140 Sum_probs=149.0
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCC
Q 001343 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1096)
Q Consensus 349 ~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg 428 (1096)
+.-.+|..+ ++|.=. ..++.|+|+++.+.+..+. ....|..=.|-.+ +.|+..+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~--------------------~~e~VvfWkWis~-~~l~lVT-~t 125 (494)
T 1bpo_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISL-NTVALVT-DN 125 (494)
T ss_dssp EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEE--------------------CSSCCCEEEEEET-TEEEEEC-SS
T ss_pred eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhccee--------------------cCCCceEEEecCC-CeEEEEc-CC
Confidence 455788887 677653 7899999999988775421 1234555566533 4555554 45
Q ss_pred eEEEEEccCCCccccceeeccc----ccCEEEEEEecCCCcEEEEEEe------CCCcEEEEEcCCceEEEeeCCCCCeE
Q 001343 429 LIQLYSYAGSNDLRQHSQIDAH----VGAVNDLAFAYPNKLLCVVTCG------DDKLIKVWELSGRKLFNFEGHEAPVY 498 (1096)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~l~~h----~~~v~~l~~s~d~~~~~l~s~s------~d~~i~iwd~~~~~~~~~~~~~~~v~ 498 (1096)
.|+-|++++...... .+..| ...|..-..+++.+. ++++|- -.|.+.+|..+.+.-+.+.||.+...
T Consensus 126 aVyHWsi~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~ 202 (494)
T 1bpo_A 126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 202 (494)
T ss_dssp EEEEEESSSSCCCEE--EEECCGGGTTCEEEEEEECTTSSE-EEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEE
T ss_pred eeEEecccCCCCchh--heecchhcccceEEEEEECCCCCe-EEEEeecccCCcccceEEEeeccccccchheeeeeeeE
Confidence 899999976433322 23223 346777788888886 333332 24788999977777788888876655
Q ss_pred EEEeeecCC-CcEEEEEECC---CeEEEEEcCCC---Ce-----eeEEe----CCCCcEEEEEEcCCCCEEEEEeeccCC
Q 001343 499 SICPHHKEN-IQFIFSTAID---GKIKAWLYDTM---GS-----RVDYD----APGHWCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 499 ~~~~~~~~~-~~~l~s~~~d---g~i~iwd~~~~---~~-----~~~~~----~~~~~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
.+.+..... ...++.+... +.+++.++... .. ...+. ...+-..++.+|+....++..+.
T Consensus 203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK---- 278 (494)
T 1bpo_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 278 (494)
T ss_dssp EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec----
Confidence 554421111 1234444332 78999988643 11 11111 12335678888888888888876
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCe
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1096)
-|.+++||++++.++..-+-..+ .+...+......-++.....|.|.-..++...
T Consensus 279 ~G~i~lyDleTgt~i~~nrIs~~-~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 279 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred CceEEEEecccceeeeeecccCC-ceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 99999999999999877665444 55555555555555665666666655555443
No 301
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.50 E-value=0.038 Score=61.80 Aligned_cols=249 Identities=13% Similarity=0.114 Sum_probs=137.9
Q ss_pred ceEEEEEcCC-CCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEE-------cCC
Q 001343 346 TVISMDFHPS-HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW-------SPD 417 (1096)
Q Consensus 346 ~V~~v~fsp~-g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-------spd 417 (1096)
....|+|+|. +..|+++-...+.|++.|..++....... .-...-.....|+| +++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~----------------~~~~~~~~p~~ia~~~~~~~~d~~ 203 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLN----------------INTIPTNRIRSIAFNKKIEGYADE 203 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEEC----------------CTTSSCSBEEEEEECCCBTTTBCT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEc----------------cCccccCCCcEEEEeecccccCCC
Confidence 4689999993 44466665555788899988766542100 00112346899999 999
Q ss_pred CCEEEEEECCC-------eEEEEEccC-CCccc-c-ceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c----
Q 001343 418 GNYVGVAFTKH-------LIQLYSYAG-SNDLR-Q-HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L---- 482 (1096)
Q Consensus 418 ~~~l~s~~~dg-------~i~vwd~~~-~~~~~-~-~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~---- 482 (1096)
|++|+++...+ .|.+++... +.... . ...+.. -.....++++|++.. ++++-..++.|..+| .
T Consensus 204 G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~-LYvtd~~~g~V~r~d~~~~~~ 281 (496)
T 3kya_A 204 AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGE-LYFNSYEKGQVFRLDLVDYFK 281 (496)
T ss_dssp TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCC-EEEEETTTTEEEEECHHHHHH
T ss_pred CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCe-EEEEECCCCEEEEEecccccc
Confidence 99777776543 256665443 22211 0 011221 123457888996553 566777788899999 5
Q ss_pred ---CCce-----------EEE-ee-CCCCCeEEEEeeecCCCcE-EEEEECCCeEEEEEcCCCCee----eEEeCC---C
Q 001343 483 ---SGRK-----------LFN-FE-GHEAPVYSICPHHKENIQF-IFSTAIDGKIKAWLYDTMGSR----VDYDAP---G 538 (1096)
Q Consensus 483 ---~~~~-----------~~~-~~-~~~~~v~~~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~----~~~~~~---~ 538 (1096)
++.. ... +. +.......++|+| ++.+ .++-+..+.|+.++.+..... ..+.+. .
T Consensus 282 ~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~ 359 (496)
T 3kya_A 282 TIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQS 359 (496)
T ss_dssp HHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBC
T ss_pred cccCceeecccccccccccceeEecCCCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCC
Confidence 4543 112 11 2233457899977 5564 445556788988776543211 122111 0
Q ss_pred ------------CcEE-EEEEc-------CCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcC--------------
Q 001343 539 ------------HWCT-TMLYS-------ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-------------- 584 (1096)
Q Consensus 539 ------------~~i~-~l~~s-------~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-------------- 584 (1096)
.... .++.. ++|.+.++-.. .+.|+.++ .+|. +.++.+..
T Consensus 360 G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~----N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~ 433 (496)
T 3kya_A 360 GYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRL----NFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTD 433 (496)
T ss_dssp CCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGG----GTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCC
T ss_pred cccCCcccccccCCCeEEEEEccccccccCCCeEEEEECC----CCEEEEEe-CCCC-EEEEecccccccccCccccccC
Confidence 1234 44554 34544444332 77899888 4553 44443321
Q ss_pred c---------cceEEEEEeCC-CCEEEEEEcCCeEEEEeCCCCeEE
Q 001343 585 K---------KSNGVVQFDTT-QNHFLAVGEDSQIKFWDMDNVNIL 620 (1096)
Q Consensus 585 ~---------~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1096)
+ .....++++++ +..+++=..+..|+.+++......
T Consensus 434 dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 1 12445777775 444444445667777777654433
No 302
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.41 E-value=0.022 Score=59.48 Aligned_cols=163 Identities=9% Similarity=0.023 Sum_probs=108.0
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCcccccccc--ccCCCCEEEEEE---cCCCCEE
Q 001343 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF--KDVPISVSRVAW---SPDGNYV 421 (1096)
Q Consensus 347 V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~---spd~~~l 421 (1096)
-.+++|++....++++.-..++|..|+...+..... .+ . .+. ......+..|.| .|+++++
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~------------~-~~s~~g~~~~~~sGl~~~~~D~~grL~ 80 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VI------------D-GASSNGDGEQQMSGLSLLTHDNSKRLF 80 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CC------------T-TTCCSSCCSEEEEEEEESSSSSCCEEE
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ec------------C-CccccCCCcceeeEEEEeccCCCCcEE
Confidence 467889886664565555789999999876543321 00 0 000 011224689999 6888887
Q ss_pred EEEE-------------CCCeEEEEEcc---CCCccccceeecccc-----------cCEEEEEEecCCCcEEEEEEeCC
Q 001343 422 GVAF-------------TKHLIQLYSYA---GSNDLRQHSQIDAHV-----------GAVNDLAFAYPNKLLCVVTCGDD 474 (1096)
Q Consensus 422 ~s~~-------------~dg~i~vwd~~---~~~~~~~~~~l~~h~-----------~~v~~l~~s~d~~~~~l~s~s~d 474 (1096)
++.. .+..|..||+. +++.+... .|.... .....++..++|+ ..++++.-
T Consensus 81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~~ 157 (334)
T 2p9w_A 81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFALG 157 (334)
T ss_dssp EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEES
T ss_pred EEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeCCCC
Confidence 7644 25789999999 77655422 232211 3588999999999 78888888
Q ss_pred -CcEEEEEcCCceEEEeeC------CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCC
Q 001343 475 -KLIKVWELSGRKLFNFEG------HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM 528 (1096)
Q Consensus 475 -~~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 528 (1096)
+.|...+..|+.+..+.. .....+.|+++| ++..|++....|.+..+|+...
T Consensus 158 ~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 158 MPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp SCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSSS
T ss_pred CCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCCC
Confidence 888888877765544321 112366899977 5677777766999999998843
No 303
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.36 E-value=0.052 Score=57.16 Aligned_cols=199 Identities=12% Similarity=0.195 Sum_probs=124.7
Q ss_pred CCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecC----CCc--EEEEEEeC--CCcEEEEEc--CCce
Q 001343 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP----NKL--LCVVTCGD--DKLIKVWEL--SGRK 486 (1096)
Q Consensus 417 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d----~~~--~~l~s~s~--d~~i~iwd~--~~~~ 486 (1096)
....++....++-+.+||+ .|+.+.. +.. +.++.+..-|+ |+. +.+++.-. +++|.+|+. ....
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~---~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHS---YNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEE---ECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEE---ccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 3455665667789999999 6666653 332 56777766552 221 13444444 689999962 3334
Q ss_pred EEEeeC------CC-CCeEEEEee--ecCCCcEEEEEECCCeEEEEEcCC-------CCeeeEEeCCCCcEEEEEEcCCC
Q 001343 487 LFNFEG------HE-APVYSICPH--HKENIQFIFSTAIDGKIKAWLYDT-------MGSRVDYDAPGHWCTTMLYSADG 550 (1096)
Q Consensus 487 ~~~~~~------~~-~~v~~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~l~~s~~~ 550 (1096)
+..+.. .. ..+..+|+. +.....++++...+|.+..|++.. .+.+..+... ..+-.+++.+..
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~ 191 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEY 191 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTT
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCC
Confidence 555522 11 456677773 332224788899999999998842 2223444443 468888998888
Q ss_pred CEEEEEeeccCCCCeEEEEeCC-----CCeeeEEEc-CcCccceEEEEE--eCCCC-EEEEEE-cCCeEEEEeCC-CCeE
Q 001343 551 SRLFSCGTSKDGDSFLVEWNES-----EGTIKRTYA-GFRKKSNGVVQF--DTTQN-HFLAVG-EDSQIKFWDMD-NVNI 619 (1096)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~-----~~~~~~~~~-~~~~~~i~~~~~--~~~~~-~l~~~~-~dg~i~iwd~~-~~~~ 619 (1096)
..|+.+-. +..|..++.+ +++.+..+. ++-...+..+++ .++++ ++++++ .+.++.+||.. +.+.
T Consensus 192 g~Lyv~eE----d~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~ 267 (355)
T 3amr_A 192 GRLYIAEE----DEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKY 267 (355)
T ss_dssp TEEEEEET----TTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCE
T ss_pred CeEEEecc----cceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcE
Confidence 88988865 5567777754 345665553 222225666776 45555 666666 67799999996 6677
Q ss_pred EEEeecC
Q 001343 620 LTSTDAE 626 (1096)
Q Consensus 620 ~~~~~~~ 626 (1096)
+..+...
T Consensus 268 vg~f~Ig 274 (355)
T 3amr_A 268 VADFRIT 274 (355)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 7766543
No 304
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.31 E-value=0.0034 Score=75.17 Aligned_cols=201 Identities=8% Similarity=-0.023 Sum_probs=117.4
Q ss_pred CCeeeeeecCCCcEEEEec--CCeEEEEEccc----ceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccc
Q 001343 832 EAVPCIALSKNDSYVMSAT--GGKISLFNMMT----FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 905 (1096)
Q Consensus 832 ~~v~~l~~s~dg~~la~~~--dg~v~iwd~~~----~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~ 905 (1096)
..+..++|++.+..|+.+. .+.|+.+++.+ ......+.........|++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3466799998877777776 47899999865 22222222222345678887524555565566788988887754
Q ss_pred eeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-E-e-cceEEEEEcccceeccccccCCCCCCCceEEE
Q 001343 906 ELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-V-H-ETQLAIYDASKMERIRQWTPQDALSAPISCAV 982 (1096)
Q Consensus 906 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~ 982 (1096)
. ......... .....+++.|++.+|+. . . .+.|.++++.... ...+.... ......|+
T Consensus 486 ~---------------~~~l~~~~~-~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~--l~~PnGla 546 (699)
T 1n7d_A 486 K---------------RKTLFREQG-SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTEN--IQWPNGIT 546 (699)
T ss_dssp C---------------EEEECCCSS-CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSS--CSSCCCEE
T ss_pred c---------------eEEEEeCCC-CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCC--CCCccEEE
Confidence 3 001111111 14577899987665555 2 2 3678877775332 22222211 34567899
Q ss_pred EeeCCcEEEEE-ecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCC
Q 001343 983 YSCNSQLVFAT-FCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1061 (1096)
Q Consensus 983 ~s~dg~~la~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~ 1061 (1096)
|+|++..|+.+ ...+.|.+++++.......+.... . .-.+..|++.. +.++++-...+.|..++..+
T Consensus 547 vd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~----~------~~~P~glavd~--~~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 547 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK----R------LAHPFSLAVFE--DKVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp ECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSS----S------CSSCCCCEEET--TEEEEECSTTTCEEEEETTT
T ss_pred EeccCCEEEEEecCCCeEEEEccCCCceEEEEecCC----c------CCCceEeEEEC--CEEEEEeCCCCeEEEEEccC
Confidence 99986655544 456789999987544333322111 0 11122355544 45666666778999999877
Q ss_pred CC
Q 001343 1062 SE 1063 (1096)
Q Consensus 1062 ~~ 1063 (1096)
|+
T Consensus 615 G~ 616 (699)
T 1n7d_A 615 GS 616 (699)
T ss_dssp EE
T ss_pred CC
Confidence 66
No 305
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.20 E-value=0.038 Score=57.67 Aligned_cols=212 Identities=10% Similarity=0.074 Sum_probs=123.2
Q ss_pred CcccEEEEEEecCCceEEEee-cCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCC----CcCCCeeee
Q 001343 763 TSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGV----NLEEAVPCI 837 (1096)
Q Consensus 763 ~~~~i~~l~~s~~~~~l~~~~-~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~----~~~~~v~~l 837 (1096)
..-...++.|.+....+..++ ..++|..|+...+. .....+++. .....+..+
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~----------------------~~~~~~~~~s~~g~~~~~~sGl 68 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS----------------------HFNVVIDGASSNGDGEQQMSGL 68 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCC----------------------EEEECCTTTCCSSCCSEEEEEE
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCe----------------------EEEEecCCccccCCCcceeeEE
Confidence 444556788988655566666 58999988863211 000011110 012245788
Q ss_pred ee---cCCCcEEEEec--------------CCeEEEEEcc---cceEEEeec--C-----------CCCCeeEEEEecCC
Q 001343 838 AL---SKNDSYVMSAT--------------GGKISLFNMM---TFKVMTTFM--S-----------PPPASTFLAFHPQD 884 (1096)
Q Consensus 838 ~~---s~dg~~la~~~--------------dg~v~iwd~~---~~~~~~~~~--~-----------h~~~i~~l~~s~~d 884 (1096)
.+ .|+|+++++.. +..|..||+. +++.+.... . -......++..+ +
T Consensus 69 ~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~ 147 (334)
T 2p9w_A 69 SLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-D 147 (334)
T ss_dssp EESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-T
T ss_pred EEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-C
Confidence 99 68898888643 3569999998 777654432 1 112477899999 8
Q ss_pred CcEEEEeeCC-CeEEEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccc
Q 001343 885 NNIIAIGTED-STIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKM 962 (1096)
Q Consensus 885 ~~~l~s~~~d-g~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~ 962 (1096)
|+..++++.- +.|...+........|..+. .........+.++++|||..|++ ...+.|..+|+.+.
T Consensus 148 GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~-----------~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 148 GNSYVAFALGMPAIARVSADGKTVSTFAWES-----------GNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp SCEEEEEEESSCEEEEECTTSCCEEEEEECC-----------CCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred CCEEEeCCCCCCeEEEEeCCCCEEeeeeecC-----------CCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 9999988887 76555555443323332211 11111125789999999998888 34899999998843
Q ss_pred ee--ccccc-cCCCCCCCceEE-EEeeCCcE-EEEEecCCcEEEEecCCCc
Q 001343 963 ER--IRQWT-PQDALSAPISCA-VYSCNSQL-VFATFCDGNIGVFDADTLR 1008 (1096)
Q Consensus 963 ~~--~~~~~-~~~~~~~~i~~l-~~s~dg~~-la~~~~dg~i~vwd~~~~~ 1008 (1096)
.. +..-. +....-.....+ ..-.+|+. |++....+.+.+.+.+..+
T Consensus 217 v~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 217 YAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDNWK 267 (334)
T ss_dssp SCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSSTTS
T ss_pred cceeecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCCcc
Confidence 22 11100 110001223333 33457888 4444456666666655543
No 306
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.20 E-value=0.002 Score=77.09 Aligned_cols=225 Identities=8% Similarity=0.000 Sum_probs=128.8
Q ss_pred CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCC----ceE-EEeeCCCCCeEEEE
Q 001343 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG----RKL-FNFEGHEAPVYSIC 501 (1096)
Q Consensus 427 dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~----~~~-~~~~~~~~~v~~~~ 501 (1096)
.+.|+..++.+.+... +......+..++|.+.+.. ++++-...+.|+.++..+ ... ..+.........++
T Consensus 385 ~~~I~~id~~~~~~~~----~~~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp TTC-CEECTTSCCEEC----CSCCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred ccceEEEeCCCCccee----eeccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 4578888887654333 1122345678999987763 344444567899998443 221 11211112345667
Q ss_pred eeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEc
Q 001343 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1096)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1096)
+.+. .+.++++-...+.|.+++++.................+++.|.+.+|+.+.. ...+.|..+++.... ...+.
T Consensus 460 vD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~--~~~~~I~~~~~dG~~-~~~l~ 535 (699)
T 1n7d_A 460 VDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGVD-IYSLV 535 (699)
T ss_dssp CCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCC--SSSCCEEBCCSSSCC-CCEES
T ss_pred EEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEccc--CCCCeEEEEeCCCCC-eeEEE
Confidence 6543 3345555566788999988755443333333345678899997766665432 113678777765332 22222
Q ss_pred CcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001343 582 GFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1096)
Q Consensus 582 ~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 660 (1096)
...-.....++++|++..|+.+. ..+.|..+++........+...........|++..+ .++++....+.|..++..+
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence 11112345699998766655554 667899999975444433332222224456777654 4555556678899999877
Q ss_pred C
Q 001343 661 G 661 (1096)
Q Consensus 661 ~ 661 (1096)
+
T Consensus 615 G 615 (699)
T 1n7d_A 615 G 615 (699)
T ss_dssp E
T ss_pred C
Confidence 6
No 307
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.15 E-value=0.3 Score=50.34 Aligned_cols=260 Identities=8% Similarity=0.115 Sum_probs=155.2
Q ss_pred CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcccccee
Q 001343 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ 446 (1096)
Q Consensus 367 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 446 (1096)
..|.|-|+.++.....+++ .-.+.-.+|..+.||.-. ..++.|+|+++.+.++..
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi----------------------~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~-- 103 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPI----------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH-- 103 (365)
T ss_dssp EEEEEEETTSTTSCEEEEC----------------------CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEE--
T ss_pred CEEEEEECCCCCCcccccc----------------------ccceeeeCCCccEEEEec-CCeEEEechHHhhhhcce--
Confidence 3788889888765533211 112334578878777665 578999999997766532
Q ss_pred ecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEc--CCceEEEeeCCCC--CeEEEEeeecCCCcEEEEEE-------
Q 001343 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL--SGRKLFNFEGHEA--PVYSICPHHKENIQFIFSTA------- 515 (1096)
Q Consensus 447 l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~--~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~------- 515 (1096)
.....|..=.|-.+.. |+-.+ +..|+-|+. +..+.+.+..|.. ...-+.+..+.+.++++..+
T Consensus 104 --~~~e~VvfWkWis~~~---L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~ 177 (365)
T 2xzh_A 104 --TMTDDVTFWKWISLNT---VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR 177 (365)
T ss_dssp --ECSSCEEEEEECSSSE---EEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTE
T ss_pred --ecCCccEEEEecCCCe---EEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCc
Confidence 1346788888876654 33333 678999993 3466677765532 22233333355666665543
Q ss_pred CCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcC--CC-CEEEEEeeccCCCCeEEEEeCCCC---e------eeEEEcCc
Q 001343 516 IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA--DG-SRLFSCGTSKDGDSFLVEWNESEG---T------IKRTYAGF 583 (1096)
Q Consensus 516 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~--~~-~~l~~~~~~~~~~~~i~iwd~~~~---~------~~~~~~~~ 583 (1096)
-.|.+.+|..+... ...+.+|......+.+.. .. +.++.+..... .+.+.+.++... . .+..+-..
T Consensus 178 v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~-g~kLhIiEi~~~~~~~~~f~kk~vdi~fpp 255 (365)
T 2xzh_A 178 VVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA-GGKLHIIEVGTPPTGNQPFPKKAVDVFFPP 255 (365)
T ss_dssp EEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT-EEEEEEEECSSCCTTCCCCCCEEEEECCCT
T ss_pred cceeEEEEeecccc-cceeeeeeeeeEEEecCCCCCCceEEEEEEecCC-CcEEEEEEcCCCCCCCCCcccccceeeCCc
Confidence 23778899876432 233444433332222211 11 13333332221 368888887432 1 11111111
Q ss_pred --CccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 584 --RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 584 --~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
.....-++..++....++.-+.-|.|++||+.++.++..-+.... .|...+.+....=++.....|.|.--.++..
T Consensus 256 ea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d--~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 256 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp TCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred cccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCC--ceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 122344578888888999999999999999999999988877655 6665555555455556667887777666554
No 308
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=97.05 E-value=0.00069 Score=62.51 Aligned_cols=78 Identities=13% Similarity=0.262 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccCccchhhhcccCC-------chHHHHHHH
Q 001343 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIML 144 (1096)
Q Consensus 72 ~~~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~r~~l~ 144 (1096)
++|+|+.|.|||||..|+.++|..|+.+.-.-+...+.+.+++|..+....+..+++....++. +..+-..|+
T Consensus 52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL~ 131 (156)
T 2nxp_A 52 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLK 131 (156)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHHH
Confidence 8999999999999999999999999998776666677899999999999888888777777765 344445666
Q ss_pred HHHHh
Q 001343 145 IELKK 149 (1096)
Q Consensus 145 ~~l~~ 149 (1096)
..|++
T Consensus 132 ~fL~~ 136 (156)
T 2nxp_A 132 RHLQE 136 (156)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 66655
No 309
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.05 E-value=0.48 Score=50.91 Aligned_cols=260 Identities=8% Similarity=0.121 Sum_probs=157.7
Q ss_pred CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcccccee
Q 001343 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ 446 (1096)
Q Consensus 367 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 446 (1096)
..|.|-|+.++.....+++ .-.+.-.+|..+.||.-. ..++.|+|+++.+.++..
T Consensus 48 ~~vvIiDl~~~~~~~rrpi----------------------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~-- 102 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPI----------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH-- 102 (494)
T ss_dssp CEEEEEETTSTTSCEEEEC----------------------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEE--
T ss_pred CeEEEEECCCCCcceeccc----------------------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcce--
Confidence 4788889888765533211 112345577777777654 579999999997766532
Q ss_pred ecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEc--CCceEEEeeCCCC--CeEEEEeeecCCCcEEEEEE-------
Q 001343 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL--SGRKLFNFEGHEA--PVYSICPHHKENIQFIFSTA------- 515 (1096)
Q Consensus 447 l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~--~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~------- 515 (1096)
. ....|..=.|-.+.. |+-.+ +..|+-|+. +..+.+.+..|.. ...-+.+..+.+.++++..+
T Consensus 103 -~-~~e~VvfWkWis~~~---l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~ 176 (494)
T 1bpo_A 103 -T-MTDDVTFWKWISLNT---VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR 176 (494)
T ss_dssp -E-CSSCCCEEEEEETTE---EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTE
T ss_pred -e-cCCCceEEEecCCCe---EEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCc
Confidence 1 235677777776553 44333 678999994 4467777765532 22233333355667766443
Q ss_pred CCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCC---CEEEEEeeccCCCCeEEEEeCCCC---e------eeEEEcC-
Q 001343 516 IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG---SRLFSCGTSKDGDSFLVEWNESEG---T------IKRTYAG- 582 (1096)
Q Consensus 516 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~---~~l~~~~~~~~~~~~i~iwd~~~~---~------~~~~~~~- 582 (1096)
..|.+.+|..+.... ..+.+|......+.+..+. ..++.+.... ..+.+.+.++... . .+..+-.
T Consensus 177 v~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~-~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp 254 (494)
T 1bpo_A 177 VVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ-AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP 254 (494)
T ss_dssp EEEEEEEEESTTCCE-EEECCSEEEEEEEECTTCSSEEEEEEEEECST-TCCEEEEEECSCCCTTCCCCCCEEEECCCCT
T ss_pred ccceEEEeecccccc-chheeeeeeeEEEecCCCCCCceEEEEEEecC-CCcEEEEEEcCCCccCCCCccceeeeeeCCc
Confidence 247788998775432 3344444333333332111 1233333222 2478888888532 1 1111111
Q ss_pred -cCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001343 583 -FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1096)
Q Consensus 583 -~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 661 (1096)
......-++..++....++..+.-|.|++||+.++.++..-+.... .|...+.+....=++.....|.|.--.++..
T Consensus 255 e~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~--~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 255 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred ccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCC--ceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 1122344588888889999999999999999999999988876654 6666666666556666668888777776655
No 310
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.03 E-value=0.1 Score=55.77 Aligned_cols=197 Identities=11% Similarity=0.067 Sum_probs=112.1
Q ss_pred CEEEEEEcCCCCEEEEEE------------CCCeEEEEEccCCC-ccccceeecc-----cccCEEEEEEec--CCCcEE
Q 001343 408 SVSRVAWSPDGNYVGVAF------------TKHLIQLYSYAGSN-DLRQHSQIDA-----HVGAVNDLAFAY--PNKLLC 467 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~------------~dg~i~vwd~~~~~-~~~~~~~l~~-----h~~~v~~l~~s~--d~~~~~ 467 (1096)
....++..|+|..+++++ .+|.|.++|.++.. ....+ .+.+ .......+.+.+ ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 455677788876655552 68999999987432 12222 2322 334677888877 354313
Q ss_pred EEEEeC--CCcEEEEE--cCCceE---EEeeCC-CCCeEEEEeeecCCCcEEEEEE-----------------CCCeEEE
Q 001343 468 VVTCGD--DKLIKVWE--LSGRKL---FNFEGH-EAPVYSICPHHKENIQFIFSTA-----------------IDGKIKA 522 (1096)
Q Consensus 468 l~s~s~--d~~i~iwd--~~~~~~---~~~~~~-~~~v~~~~~~~~~~~~~l~s~~-----------------~dg~i~i 522 (1096)
+++-.. +.+|.+|+ ..+... ..+.+. -...+.+.+.+ +|.+.++.. ..|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 343333 56788888 333332 333332 23467888866 556666543 1244444
Q ss_pred EEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCC-Cee--eEEEcCcCccceEEEEEeC-CCC
Q 001343 523 WLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTI--KRTYAGFRKKSNGVVQFDT-TQN 598 (1096)
Q Consensus 523 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~i~~~~~~~-~~~ 598 (1096)
+|. ++. ......-...+.++|+||++.++.+.. ..+.|+.|++.. +.. .+.+.. ......+++++ +|+
T Consensus 208 ~d~--~~~-~~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~~--~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 208 YSP--NDV-RVVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLSF--DTLVDNISVDPVTGD 279 (355)
T ss_dssp ECT--TCC-EEEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEEC--SSEEEEEEECTTTCC
T ss_pred EEC--CeE-EEeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEeC--CCCCceEEEeCCCCc
Confidence 443 322 222222335789999999999888764 267899999853 332 233421 22556688888 588
Q ss_pred EEEEEEcC-CeEEEEeCC
Q 001343 599 HFLAVGED-SQIKFWDMD 615 (1096)
Q Consensus 599 ~l~~~~~d-g~i~iwd~~ 615 (1096)
+.+++..+ +.|..|+..
T Consensus 280 lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 280 LWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEEESCHHHHHSCCTT
T ss_pred EEEEecCCceEEEEECCC
Confidence 77766533 344445543
No 311
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.00 E-value=0.089 Score=56.96 Aligned_cols=229 Identities=12% Similarity=0.039 Sum_probs=115.9
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceee---cccccCEEEEEEecC---CCcEEEEEEeCC-----C
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI---DAHVGAVNDLAFAYP---NKLLCVVTCGDD-----K 475 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l---~~h~~~v~~l~~s~d---~~~~~l~s~s~d-----~ 475 (1096)
.....++|.|||++++ +..+|.|.+++ +++. ..+..+ .........|+|+|+ +.. +.++-... +
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~-lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPY-VYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCE-EEEEEecCCCCCcc
Confidence 3567999999999555 45679999998 3331 111111 122456899999998 553 33333322 5
Q ss_pred cEEEEE-cCCc-----eE-EEee---CCCCCeEEEEeeecCCCcEEEEEEC-------------CCeEEEEEcCCC----
Q 001343 476 LIKVWE-LSGR-----KL-FNFE---GHEAPVYSICPHHKENIQFIFSTAI-------------DGKIKAWLYDTM---- 528 (1096)
Q Consensus 476 ~i~iwd-~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~---- 528 (1096)
.|..++ ..+. .+ ..+. +.......++|.+ +|.+.++.+. .|.|.-++.+..
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p--dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP--DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT--TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC--CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 777888 4331 11 1132 1111235778865 6655555432 145555554420
Q ss_pred --------CeeeEEeCCCCcEEEEEEcC-CCCEEEEEeeccCC-----CCeEEEEeCCC----------------CeeeE
Q 001343 529 --------GSRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDG-----DSFLVEWNESE----------------GTIKR 578 (1096)
Q Consensus 529 --------~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~~~~~-----~~~i~iwd~~~----------------~~~~~ 578 (1096)
.....+.........++|+| ++...++ ....+. ...|.+..... ..++.
T Consensus 184 npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~-d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 184 NPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSS-EHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEE-EECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEE-EcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 01111111123467789999 5554444 321111 11243332111 01222
Q ss_pred EEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeE------EEEeecCCCCCCccEEEEeCCCCEEEEEE
Q 001343 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI------LTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1096)
Q Consensus 579 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1096)
.+..+. ....++| .+|..+++....+.|...+++.... ...+-. ....+..+++.|||.++++..
T Consensus 263 ~~~~~~--ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 263 FWPQGF--PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp ECTTCC--CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred ecCCCC--CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence 222111 2345666 3555555555667787777654321 112211 123788999999997776654
No 312
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=96.96 E-value=0.00033 Score=62.85 Aligned_cols=77 Identities=12% Similarity=0.219 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccCccchhhhcccCC-------chHHHHHHH
Q 001343 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIML 144 (1096)
Q Consensus 72 ~~~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~r~~l~ 144 (1096)
++|+|+.|.||||+..|..++|..|+.+.-.-+... .+.+++|..+....++.+++....++. ++.+-..|+
T Consensus 33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s~~lL~ 111 (138)
T 2j4b_A 33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLI 111 (138)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHHHHHH
Confidence 999999999999999999999999999877767666 899999999998888877776665543 344445666
Q ss_pred HHHHh
Q 001343 145 IELKK 149 (1096)
Q Consensus 145 ~~l~~ 149 (1096)
..|++
T Consensus 112 ~fL~~ 116 (138)
T 2j4b_A 112 NFLEE 116 (138)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.95 E-value=0.29 Score=52.89 Aligned_cols=232 Identities=11% Similarity=0.001 Sum_probs=119.3
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceee---cccccCEEEEEEecC---CCcEEEEEEeC---C---
Q 001343 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI---DAHVGAVNDLAFAYP---NKLLCVVTCGD---D--- 474 (1096)
Q Consensus 407 ~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l---~~h~~~v~~l~~s~d---~~~~~l~s~s~---d--- 474 (1096)
.....|+|.|||++++ +..+|.|++++ .+++ ..+..+ .........|+|+|+ +.. +.++-+. +
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSW-VYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEEC-SSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCc--eEeeccceeecCCCceeeEEeCCCCCcCCE-EEEEEeccCCCCCc
Confidence 3578899999998554 55669999997 3443 211111 122356899999998 553 3333332 3
Q ss_pred -CcEEEEEcCCc--------eE-EEeeC-CCCCeEEEEeeecCCCcEEEEEEC-------------CCeEEEEEcCCCC-
Q 001343 475 -KLIKVWELSGR--------KL-FNFEG-HEAPVYSICPHHKENIQFIFSTAI-------------DGKIKAWLYDTMG- 529 (1096)
Q Consensus 475 -~~i~iwd~~~~--------~~-~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~~- 529 (1096)
..|..|+.++. .+ ..+.. .......++|.| +|.+.++.+. .|.|.-++.+..-
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p--DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p 181 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP--DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP 181 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT--TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC--CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence 56777773222 11 11221 111235677765 6666655432 2455555543210
Q ss_pred ------eeeEEeCCCCcEEEEEEcC-CCCEEEEEeeccCCCCeEEEEeCCC--------C--------eeeEEEcCcCcc
Q 001343 530 ------SRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESE--------G--------TIKRTYAGFRKK 586 (1096)
Q Consensus 530 ------~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~~~~~~~~i~iwd~~~--------~--------~~~~~~~~~~~~ 586 (1096)
....+.........++|+| +|+..++ -...+....|.+..... + ..+..+.. ...
T Consensus 182 ~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~-d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~-~~~ 259 (354)
T 3a9g_A 182 ADNPFPNSPIWSYGHRNPQGIDWHRASGVMVAT-EHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGS-ETW 259 (354)
T ss_dssp TTSSSTTCCEEEECCSCCCEEEECTTTCCEEEE-ECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT-CCC
T ss_pred CCCCCCCCcEEEEccCCcceEEEeCCCCCEEEE-ecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCC-CCc
Confidence 0111111122356899999 5654444 32211112343332110 0 12222211 111
Q ss_pred ceEEEEEe-------CCCCEEEEEEcCCeEEEEeCCCC-eEE--EEeecCCCCCCccEEEEeCCCCEEEEEE
Q 001343 587 SNGVVQFD-------TTQNHFLAVGEDSQIKFWDMDNV-NIL--TSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1096)
Q Consensus 587 ~i~~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 648 (1096)
....++|. .+|.++++....+.|...++... ... ..+. ......+..+++.|||.++++..
T Consensus 260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-KNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-TTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-cCCCCCeeEEEECCCCcEEEEEe
Confidence 45567773 45656665556778888888753 332 1221 11133788999999997766654
No 314
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=96.89 E-value=0.0003 Score=63.79 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=60.4
Q ss_pred ccchhhHHHHHHHHHHHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccCccchhhhcccCC-------chHH
Q 001343 67 RYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTA 139 (1096)
Q Consensus 67 ~~~~~~~~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~ 139 (1096)
++.+ ++|+||.|.||||+..| .++|..|+.+.-.-+...+.+.+++|..+....++.+++....++. ++.+
T Consensus 31 EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s 108 (148)
T 2j49_A 31 ELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTT 108 (148)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 4344 99999999999999999 9999999998766665556788888888888777777776666644 3444
Q ss_pred HHHHHHHHHh
Q 001343 140 RGIMLIELKK 149 (1096)
Q Consensus 140 r~~l~~~l~~ 149 (1096)
-..|+..|++
T Consensus 109 ~~lL~~fL~~ 118 (148)
T 2j49_A 109 LNLLLYFLNE 118 (148)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555544
No 315
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.89 E-value=0.22 Score=53.77 Aligned_cols=230 Identities=16% Similarity=0.128 Sum_probs=119.8
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCC-eeecccceeecccccCccccccccccCCCCEEEEEEcCC---CCE
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRD-RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GNY 420 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---~~~ 420 (1096)
...+.++|.|+|+ ++++ ..+|.|.+++ .+++ .+.. + . +..........|+|+|+ +..
T Consensus 29 ~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~~~~~~--~------------~--v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGKKLVAS--F------------D--VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp SCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCEEEEEE--C------------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCceEeec--c------------c--eeecCCCceeeEEeCCCCCcCCE
Confidence 4578999999998 5655 4679999997 3443 1110 0 0 11223456889999998 555
Q ss_pred EEEEEC----C----CeEEEEEccCCC-cc---ccc-eeec-ccccCEEEEEEecCCCcEEEEEEeC-------------
Q 001343 421 VGVAFT----K----HLIQLYSYAGSN-DL---RQH-SQID-AHVGAVNDLAFAYPNKLLCVVTCGD------------- 473 (1096)
Q Consensus 421 l~s~~~----d----g~i~vwd~~~~~-~~---~~~-~~l~-~h~~~v~~l~~s~d~~~~~l~s~s~------------- 473 (1096)
|.++.. + +.|..|+...+. .+ +.+ ..+. +.......++|.|||. +.++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 554433 2 567778776541 11 111 0121 1111246799999997 5555332
Q ss_pred CCcEEEEEcCCc----------eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCC---eEEEEEcCCCC-----------
Q 001343 474 DKLIKVWELSGR----------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMG----------- 529 (1096)
Q Consensus 474 d~~i~iwd~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~----------- 529 (1096)
.+.|.-.+.+|+ .+. -.++.. ...++|++. ++.++++-...+ .|.+. ..+.
T Consensus 168 ~G~I~ri~~dG~~p~~npf~~~~i~-a~G~rn-p~Gla~d~~-~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~ 242 (354)
T 3a9g_A 168 AGKILRVDEEGRPPADNPFPNSPIW-SYGHRN-PQGIDWHRA-SGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKA 242 (354)
T ss_dssp SSEEEEECTTSCCCTTSSSTTCCEE-EECCSC-CCEEEECTT-TCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCC
T ss_pred CeEEEEEcCCCCCCCCCCCCCCcEE-EEccCC-cceEEEeCC-CCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCC
Confidence 245555554443 122 233433 456778653 234443332211 12222 2111
Q ss_pred -------eeeEEeCCCCcEEEEEEc-------CCCCEEEEEeeccCCCCeEEEEeCCCC-eee--EEEcCcCccceEEEE
Q 001343 530 -------SRVDYDAPGHWCTTMLYS-------ADGSRLFSCGTSKDGDSFLVEWNESEG-TIK--RTYAGFRKKSNGVVQ 592 (1096)
Q Consensus 530 -------~~~~~~~~~~~i~~l~~s-------~~~~~l~~~~~~~~~~~~i~iwd~~~~-~~~--~~~~~~~~~~i~~~~ 592 (1096)
....+.........++|. .+|.++++... .+.|...++... +.. ..+.......+..++
T Consensus 243 ~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~----~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~ 318 (354)
T 3a9g_A 243 GRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR----GSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVV 318 (354)
T ss_dssp CCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT----TTEEEEEEECGGGCEEEEEEECTTTSCCEEEEE
T ss_pred CCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC----CCEEEEEEECCCCcccceeeeccCCCCCeeEEE
Confidence 111221223357788884 45655555432 667888877643 322 223211122567788
Q ss_pred EeCCCCEEEEEE
Q 001343 593 FDTTQNHFLAVG 604 (1096)
Q Consensus 593 ~~~~~~~l~~~~ 604 (1096)
+.|+|..+++..
T Consensus 319 ~~pDG~lyv~~~ 330 (354)
T 3a9g_A 319 IDDDGGILISTS 330 (354)
T ss_dssp ECTTSCEEEEEC
T ss_pred ECCCCcEEEEEe
Confidence 889886655543
No 316
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.80 E-value=0.13 Score=55.69 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=62.5
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC---CCEE
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GNYV 421 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---~~~l 421 (1096)
...+.++|.|+|+ ++++ ..+|.|.+++ +++.... .++ . ++.........|+|+|+ +.+|
T Consensus 31 ~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~-----~~~-------~--v~~~g~~~p~gia~~pdf~~~g~l 92 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTY-----AEL-------S--VYHRGESGLLGLALHPRFPQEPYV 92 (352)
T ss_dssp SCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEE-----EEC-------C--CCCSTTCSEEEEEECTTTTTSCEE
T ss_pred CCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEe-----ecc-------e--EeecCCCCceeEEECCCCCCCCEE
Confidence 3578999999998 5655 4679999998 4432110 000 0 12223457899999998 5555
Q ss_pred EEEEC-C-----CeEEEEEccCCCcc--ccce-eec---ccccCEEEEEEecCCCcEEEEEE
Q 001343 422 GVAFT-K-----HLIQLYSYAGSNDL--RQHS-QID---AHVGAVNDLAFAYPNKLLCVVTC 471 (1096)
Q Consensus 422 ~s~~~-d-----g~i~vwd~~~~~~~--~~~~-~l~---~h~~~v~~l~~s~d~~~~~l~s~ 471 (1096)
.++.. . +.|..|+...+..- +.+. .+. +.......++|.|||. +.++.
T Consensus 93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 55433 2 57888887753211 1111 122 1111236899999997 55553
No 317
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.80 E-value=0.12 Score=54.49 Aligned_cols=229 Identities=10% Similarity=0.025 Sum_probs=112.7
Q ss_pred CCEEEEEECC----CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC-----CcEEEEE-cCCceE
Q 001343 418 GNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LSGRKL 487 (1096)
Q Consensus 418 ~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d-----~~i~iwd-~~~~~~ 487 (1096)
+..++.|+.+ ..+..||..+.+-.. ...+......-..+. -++. +++.|+.+ ..+.+|| .+.+-
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W- 89 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQ-VAELPSRRCRAGMVY--MAGL--VFAVGGFNGSLRVRTVDSYDPVKDQW- 89 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEE--ETTE--EEEESCBCSSSBCCCEEEEETTTTEE-
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeE-cccCCcccccceEEE--ECCE--EEEEeCcCCCccccceEEECCCCCce-
Confidence 3455556543 357888887754221 111221111111222 2455 66667654 3588888 44432
Q ss_pred EEeeCC---CCCeEEEEeeecCCCcEEEEEECCC-----eEEEEEcCCCCeeeEEeCCCC-cEEEEEEcCCCCEEEEEee
Q 001343 488 FNFEGH---EAPVYSICPHHKENIQFIFSTAIDG-----KIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGT 558 (1096)
Q Consensus 488 ~~~~~~---~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~l~~~~~ 558 (1096)
..+... ...-..+.+ ++.+++.|+.++ .+.+||..+..-...-..... .-.+++. -+++.++.++.
T Consensus 90 ~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~ 164 (302)
T 2xn4_A 90 TSVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGY 164 (302)
T ss_dssp EEECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCE
T ss_pred eeCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCC
Confidence 222211 111112222 456777777654 466777765543322111111 1112222 25666666665
Q ss_pred ccCC---CCeEEEEeCCCCeeeEEEcCcCcc-ceEEEEEeCCCCEEEEEEcC-----CeEEEEeCCCCeEEEEeecCCCC
Q 001343 559 SKDG---DSFLVEWNESEGTIKRTYAGFRKK-SNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDAEGGL 629 (1096)
Q Consensus 559 ~~~~---~~~i~iwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~ 629 (1096)
+... ...+.+||+.+.+-...-...... ....+.+ ++..++.|+.+ ..+.+||..+.+....-.....
T Consensus 165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~- 241 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC- 241 (302)
T ss_dssp ETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC-
T ss_pred CCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc-
Confidence 3321 356889999887654432211111 1222222 56667777653 4699999988765544322221
Q ss_pred CCccEEEEeCCCCEEEEEECCC-----cEEEEEcCCC
Q 001343 630 PNLPRLRFSKEGNLLAVTTADN-----GFKILANAIG 661 (1096)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~ 661 (1096)
.....+..-++.+++.|+.++ .+.+||+.+.
T Consensus 242 -r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 242 -RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp -CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred -cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 112222223677777777653 4788888765
No 318
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.71 E-value=0.089 Score=55.62 Aligned_cols=230 Identities=12% Similarity=0.040 Sum_probs=114.9
Q ss_pred CCCEEEEEE-CC-----CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC-----CcEEEEE-cCC
Q 001343 417 DGNYVGVAF-TK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LSG 484 (1096)
Q Consensus 417 d~~~l~s~~-~d-----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d-----~~i~iwd-~~~ 484 (1096)
++..++.|+ .+ ..+.+||..+++-.. ...+.........+ ..++. +++.|+.+ ..+.+|| .++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~--~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKRRYVASV--SLHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCCBSCEEE--EETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhhccccEE--EECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 445666666 32 368889987754221 11122111111222 23455 66777654 4688999 555
Q ss_pred c---eEEE--eeCCCCCeEEEEeeecCCCcEEEEEECC-----CeEEEEEcCCCCeeeEEeCCCC--cEEEEEEcCCCCE
Q 001343 485 R---KLFN--FEGHEAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSR 552 (1096)
Q Consensus 485 ~---~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~~~~ 552 (1096)
+ -... +......-..+.+ ++.+++.|+.+ ..+.+||..+.+-...-..... ....+. -+++.
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i 162 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVI 162 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEE
Confidence 4 2211 1111111112222 45677777654 3577888776543332222211 112222 25666
Q ss_pred EEEEeeccC-CCCeEEEEeCCCCeeeEEEcCcCcc-ceEEEEEeCCCCEEEEEEcC-----CeEEEEeCCCCeEEEEeec
Q 001343 553 LFSCGTSKD-GDSFLVEWNESEGTIKRTYAGFRKK-SNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 553 l~~~~~~~~-~~~~i~iwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~ 625 (1096)
++.++.+.. ....+..||+.+.+-...-...... ....+.+ ++..++.|+.+ ..+.+||+.+.+....-..
T Consensus 163 yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 240 (301)
T 2vpj_A 163 YCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM 240 (301)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred EEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC
Confidence 666654221 1356889999887654432211111 1122222 55666777653 4689999988776554332
Q ss_pred CCCCCCccEEEEeCCCCEEEEEECC-----CcEEEEEcCCC
Q 001343 626 EGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANAIG 661 (1096)
Q Consensus 626 ~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 661 (1096)
... .....+..-++++++.|+.+ ..+.+||+.+.
T Consensus 241 p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 241 TTP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SSC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CCc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 222 22222222366777777765 34677777654
No 319
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.60 E-value=0.14 Score=54.00 Aligned_cols=193 Identities=10% Similarity=0.005 Sum_probs=95.5
Q ss_pred CCCEEEEEECC-----CeEEEEEccCCCc--cccceeecccccCEEEEEEecCCCcEEEEEEeCC-----CcEEEEE-cC
Q 001343 417 DGNYVGVAFTK-----HLIQLYSYAGSND--LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LS 483 (1096)
Q Consensus 417 d~~~l~s~~~d-----g~i~vwd~~~~~~--~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d-----~~i~iwd-~~ 483 (1096)
+++.++.|+.+ ..+.+||..+++. ......+.........+.+ +++ +++.|+.+ ..+.+|| .+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDM--IYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTE--EEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCE--EEEEcccCCCcccceEEEEcCCC
Confidence 56777777754 4688999887651 1111122211112222222 455 66666644 3588888 44
Q ss_pred CceEEEeeCCCCCe-EEEEeeecCCCcEEEEEECC-----CeEEEEEcCCCCeeeEEeCCCC--cEEEEEEcCCCCEEEE
Q 001343 484 GRKLFNFEGHEAPV-YSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFS 555 (1096)
Q Consensus 484 ~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~~~~l~~ 555 (1096)
.+-...-....... .+++. . ++.+++.|+.+ ..+.+||..+..-...-..... ....+. -+++.++.
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~ 212 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVV-A--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVV 212 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEE-E--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEE
T ss_pred CeEEECCCCCCCcccceEEE-E--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEE
Confidence 43222111111111 12222 1 45677777765 3577888776543332111111 112222 25566666
Q ss_pred EeeccCC-CCeEEEEeCCCCeeeEEEcCcCcc-ceEEEEEeCCCCEEEEEEcC-----CeEEEEeCCCCeEE
Q 001343 556 CGTSKDG-DSFLVEWNESEGTIKRTYAGFRKK-SNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNIL 620 (1096)
Q Consensus 556 ~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~ 620 (1096)
++.+... ...+.+||+.+.+....-...... ....+.+ ++..++.|+.+ ..+.+||..+.+..
T Consensus 213 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 213 GGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred eCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 6643221 357899999887654432211111 1222222 55666777654 35788888776543
No 320
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=96.56 E-value=0.0021 Score=51.32 Aligned_cols=36 Identities=33% Similarity=0.432 Sum_probs=32.9
Q ss_pred CCcchHHHHHHHHHHHHHcChHHHHHHHHHhhCCCc
Q 001343 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFF 36 (1096)
Q Consensus 1 ~~~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~ 36 (1096)
|+....||+.||..||.|.||..||-+|++||++.-
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 778899999999999999999999999999998764
No 321
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.55 E-value=0.22 Score=52.73 Aligned_cols=229 Identities=7% Similarity=0.003 Sum_probs=113.7
Q ss_pred EEEEEEC--CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCC----CcEEEEE-cCCceEEEeeC
Q 001343 420 YVGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWE-LSGRKLFNFEG 492 (1096)
Q Consensus 420 ~l~s~~~--dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d----~~i~iwd-~~~~~~~~~~~ 492 (1096)
.++.|+. ...+.+||..+++-.. ...+......-..+. -++. +++.|+.+ ..+.+|| .+++-. .+..
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~-~~~~ 87 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTD-IRCPFEKRRDAACVF--WDNV--VYILGGSQLFPIKRMDCYNVVKDSWY-SKLG 87 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEE-CCCCSCCCBSCEEEE--ETTE--EEEECCBSSSBCCEEEEEETTTTEEE-EEEC
T ss_pred EEEEeCCCCCceEEEecCCCCCEec-CCCCCcccceeEEEE--ECCE--EEEEeCCCCCCcceEEEEeCCCCeEE-ECCC
Confidence 4455654 3578889988764221 111221111222222 2455 66777654 6788889 554332 2221
Q ss_pred C-CCCe-EEEEeeecCCCcEEEEEECC------CeEEEEEcCCCCeeeEEeCCCC-cEEEEEEcCCCCEEEEEeeccCC-
Q 001343 493 H-EAPV-YSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGTSKDG- 562 (1096)
Q Consensus 493 ~-~~~v-~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~l~~~~~~~~~- 562 (1096)
. .... .+++. . ++.+++.|+.+ ..+.+||..+..-...-..... .-.+++. -+++.++.++.....
T Consensus 88 ~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 88 PPTPRDSLAACA-A--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNV 163 (306)
T ss_dssp CSSCCBSCEEEE-E--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTT
T ss_pred CCccccceeEEE-E--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCC
Confidence 1 1111 11221 1 45677777765 4578888876543322111111 1112222 256666666643322
Q ss_pred ----CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC-----CeEEEEeCCCCeEEEEeecCCCCCCcc
Q 001343 563 ----DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1096)
Q Consensus 563 ----~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1096)
...+.+||+.+.+-...-.......-..++.. ++..++.|+.+ ..+.+||..+.+....-..........
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 242 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVK 242 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCE
T ss_pred cccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcccee
Confidence 35688999988765443221111111122222 55666666543 468999998876544322222111122
Q ss_pred EEEEeCCCCEEEEEECC-----CcEEEEEcCCC
Q 001343 634 RLRFSKEGNLLAVTTAD-----NGFKILANAIG 661 (1096)
Q Consensus 634 ~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 661 (1096)
.+.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 243 ~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 243 CAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred EEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 2222 67788888754 45777887665
No 322
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.46 E-value=0.26 Score=52.07 Aligned_cols=193 Identities=11% Similarity=0.151 Sum_probs=103.0
Q ss_pred CCCcEEEEec-C----CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCC------CeEEEEeeccceeee
Q 001343 841 KNDSYVMSAT-G----GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED------STIHIYNVRVDELCV 909 (1096)
Q Consensus 841 ~dg~~la~~~-d----g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~d------g~i~iw~~~~~~~~~ 909 (1096)
-++++++.|+ + ..+.+||..+.+....-..........+..- ++++++.|+.+ ..+.+||..+.+
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~--- 129 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTES--- 129 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTE---
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCc---
Confidence 3777777776 3 5699999987654333221222222222233 67788888865 457888888765
Q ss_pred eeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Ee---------cceEEEEEcccceeccccccCCCCCCCce
Q 001343 910 WSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VH---------ETQLAIYDASKMERIRQWTPQDALSAPIS 979 (1096)
Q Consensus 910 w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~i~ 979 (1096)
|..- ..+.... ....+..-+++.++. +. -..+.+||+.+.+-...-... .....
T Consensus 130 W~~~----------~~~p~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~ 193 (306)
T 3ii7_A 130 WHTK----------PSMLTQR---CSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI---EARKN 193 (306)
T ss_dssp EEEE----------CCCSSCC---BSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCS---SCCBS
T ss_pred eEeC----------CCCcCCc---ceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCcc---chhhc
Confidence 3211 1111111 111122236666666 32 345889999876532211111 11112
Q ss_pred EEEEeeCCcEEEEEecC-----CcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeC---
Q 001343 980 CAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD--- 1051 (1096)
Q Consensus 980 ~l~~s~dg~~la~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~d--- 1051 (1096)
..+..-++++++.|+.+ ..+.+||+.+.+-... . ..|.. ... . .++.. ++.+++.|+.+
T Consensus 194 ~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~---~~p~~---r~~--~--~~~~~--~~~i~v~GG~~~~~ 260 (306)
T 3ii7_A 194 HGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-S---PMPWK---GVT--V--KCAAV--GSIVYVLAGFQGVG 260 (306)
T ss_dssp CEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEEC-C---CCSCC---BSC--C--EEEEE--TTEEEEEECBCSSS
T ss_pred ceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC-C---CCCCC---ccc--e--eEEEE--CCEEEEEeCcCCCe
Confidence 22223478888888754 3588999988764322 1 12222 111 1 12222 57888888865
Q ss_pred --CcEEEEccCCCCCcccc
Q 001343 1052 --GSVKVMEPSESEGKWGV 1068 (1096)
Q Consensus 1052 --g~i~vW~v~~~~~~~~~ 1068 (1096)
..+.+||+.+. +|..
T Consensus 261 ~~~~~~~yd~~~~--~W~~ 277 (306)
T 3ii7_A 261 RLGHILEYNTETD--KWVA 277 (306)
T ss_dssp BCCEEEEEETTTT--EEEE
T ss_pred eeeeEEEEcCCCC--eEEe
Confidence 46888888774 4554
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.39 E-value=1.4 Score=47.41 Aligned_cols=234 Identities=9% Similarity=-0.001 Sum_probs=117.8
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcccccee----ecccccCEEEEEEecC---CCcEEEEEEeC-------
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ----IDAHVGAVNDLAFAYP---NKLLCVVTCGD------- 473 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----l~~h~~~v~~l~~s~d---~~~~~l~s~s~------- 473 (1096)
....|+|.|||+.|.++...|.|++++.+. +....+.. .....+....++|+|+ +.. +.++-+.
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR-IWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE-EEEEEEEECSSSCE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCE-EEEEEeCCCCCCCc
Confidence 467899999999444556789999998543 21111111 1122346789999996 553 3333322
Q ss_pred CCcEEEEE-cCC--c--eEEE-eeCC------CCCeEEEEeeecCCCcEEEEEEC-------------CCeEEEEEcCCC
Q 001343 474 DKLIKVWE-LSG--R--KLFN-FEGH------EAPVYSICPHHKENIQFIFSTAI-------------DGKIKAWLYDTM 528 (1096)
Q Consensus 474 d~~i~iwd-~~~--~--~~~~-~~~~------~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~ 528 (1096)
...|..|+ ..+ . .... +... ...-..+.|.| +|.+.++.+. .|.|.-++.+..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p--dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG--KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS--SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC--CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 23566666 322 1 1111 1111 11235688866 6655555433 245666665432
Q ss_pred C------------eeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEE--------eCCCC--------------
Q 001343 529 G------------SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW--------NESEG-------------- 574 (1096)
Q Consensus 529 ~------------~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iw--------d~~~~-------------- 574 (1096)
- ....+.........++|.|+...|.++....++...|.+. ....+
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 0 1112222223578899999444444443221111122221 10000
Q ss_pred -------eeeEEEcCcCccceEEEEEeC-------CCCEEEEEEcCCeEEEEeCCCCeEEEEeecC-CCCCCccEEEEeC
Q 001343 575 -------TIKRTYAGFRKKSNGVVQFDT-------TQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-GGLPNLPRLRFSK 639 (1096)
Q Consensus 575 -------~~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~ 639 (1096)
..+..+..+. ....+.|.. ++.++++.-..+.|...+++.++........ .....+..+++.|
T Consensus 255 ~~~~~~~~P~~~~~~~~--ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p 332 (353)
T 2g8s_A 255 EIVAGTEQPVFYWKDSP--AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP 332 (353)
T ss_dssp SSCTTSCCCSEEESSCC--CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred CCCCCccCCeEEeCCCc--CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence 0111222221 344566653 4556665556778888888766544332211 1123788999999
Q ss_pred CCCEEEEE
Q 001343 640 EGNLLAVT 647 (1096)
Q Consensus 640 ~~~~l~~~ 647 (1096)
||.++++.
T Consensus 333 dG~lyv~t 340 (353)
T 2g8s_A 333 DGYLYVLT 340 (353)
T ss_dssp TSCEEEEE
T ss_pred CCcEEEEE
Confidence 99866654
No 324
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.34 E-value=0.3 Score=51.89 Aligned_cols=192 Identities=13% Similarity=0.157 Sum_probs=100.4
Q ss_pred cCCCcEEEEec-----C-------CeEEEEEcccceEEEeecCCCCCee-EEEEecCCCcEEEEeeCC--------CeEE
Q 001343 840 SKNDSYVMSAT-----G-------GKISLFNMMTFKVMTTFMSPPPAST-FLAFHPQDNNIIAIGTED--------STIH 898 (1096)
Q Consensus 840 s~dg~~la~~~-----d-------g~v~iwd~~~~~~~~~~~~h~~~i~-~l~~s~~d~~~l~s~~~d--------g~i~ 898 (1096)
..++++++.|+ + ..+.+||..+.+....-........ +++. - ++++++.|+.+ ..+.
T Consensus 43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~ 120 (315)
T 4asc_A 43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGE-A-LNSIYVVGGREIKDGERCLDSVM 120 (315)
T ss_dssp CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEE-E-TTEEEEECCEESSTTCCBCCCEE
T ss_pred EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEE-E-CCEEEEEeCCcCCCCCcccceEE
Confidence 35777777776 1 1278889877654332111111111 2222 3 57788888743 3578
Q ss_pred EEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Ee------cceEEEEEccccee--ccccc
Q 001343 899 IYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VH------ETQLAIYDASKMER--IRQWT 969 (1096)
Q Consensus 899 iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~------d~~i~iwd~~~~~~--~~~~~ 969 (1096)
+||..+.+ |..- ..+... .....+...+++.++. +. -..+.+||+.+.+- +..+.
T Consensus 121 ~~d~~~~~---W~~~----------~~~p~~---r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p 184 (315)
T 4asc_A 121 CYDRLSFK---WGES----------DPLPYV---VYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ 184 (315)
T ss_dssp EEETTTTE---EEEC----------CCCSSC---CBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCS
T ss_pred EECCCCCc---EeEC----------CCCCCc---ccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCC
Confidence 88887765 3211 111111 1112222346666666 43 24689999987653 22222
Q ss_pred cCCCCCCCceEEEEeeCCcEEEEEecCC-----cEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCce
Q 001343 970 PQDALSAPISCAVYSCNSQLVFATFCDG-----NIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQ 1044 (1096)
Q Consensus 970 ~~~~~~~~i~~l~~s~dg~~la~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~ 1044 (1096)
. ......+..-++++++.|+.++ .+.+||+.+.+-...-. .|.. ... . +++.. ++.+
T Consensus 185 ~-----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~---r~~--~--~~~~~--~~~l 246 (315)
T 4asc_A 185 T-----ARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQE---RSS--L--SLVSL--VGTL 246 (315)
T ss_dssp S-----CCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSC---CBS--C--EEEEE--TTEE
T ss_pred C-----chhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCc---ccc--e--eEEEE--CCEE
Confidence 1 1112222234788888888654 48889998876433211 2222 111 1 12222 5788
Q ss_pred EEEEeeCC--------------cEEEEccCCCCCccccC
Q 001343 1045 FAIGLTDG--------------SVKVMEPSESEGKWGVS 1069 (1096)
Q Consensus 1045 l~s~~~dg--------------~i~vW~v~~~~~~~~~~ 1069 (1096)
++.|+.++ .|.+||+.+. +|..-
T Consensus 247 ~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~ 283 (315)
T 4asc_A 247 YAIGGFATLETESGELVPTELNDIWRYNEEEK--KWEGV 283 (315)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEEEETTTT--EEEEE
T ss_pred EEECCccccCcCCccccccccCcEEEecCCCC--hhhhh
Confidence 88888743 3677887764 55543
No 325
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.33 E-value=0.4 Score=51.20 Aligned_cols=188 Identities=6% Similarity=0.054 Sum_probs=108.0
Q ss_pred EEEEEEecCCCcEEEEEE------------eCCCcEEEEE-cCC-ceEEE--eeC-----CCCCeEEEEeeecCCCc--E
Q 001343 454 VNDLAFAYPNKLLCVVTC------------GDDKLIKVWE-LSG-RKLFN--FEG-----HEAPVYSICPHHKENIQ--F 510 (1096)
Q Consensus 454 v~~l~~s~d~~~~~l~s~------------s~d~~i~iwd-~~~-~~~~~--~~~-----~~~~v~~~~~~~~~~~~--~ 510 (1096)
.-++...|+|. .++++ ..+|.|.++| .+. ..... +.+ .......+.+..+.++. +
T Consensus 52 ~EDi~~~~~G~--~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 52 SEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCEEEECTTSE--EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred cceeEEcCCCe--EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 34555667664 44444 2689999999 421 12222 222 23456777776643343 4
Q ss_pred EEEEEC--CCeEEEEEcCCCCeee----EEeCC-CCcEEEEEEcCCCCEEEEEeec-------------cCCCCeEEEEe
Q 001343 511 IFSTAI--DGKIKAWLYDTMGSRV----DYDAP-GHWCTTMLYSADGSRLFSCGTS-------------KDGDSFLVEWN 570 (1096)
Q Consensus 511 l~s~~~--dg~i~iwd~~~~~~~~----~~~~~-~~~i~~l~~s~~~~~l~~~~~~-------------~~~~~~i~iwd 570 (1096)
+++-.. +.+|.+|+++...... .+... -...+.+.+.++|.+.++.... ....+.|+-+|
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444333 5788898887654332 22221 2267899999999877765310 11245677776
Q ss_pred CCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE-cCCeEEEEeCCC-CeEE--EEeecCCCCCCccEEEEeC-CCCEEE
Q 001343 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDN-VNIL--TSTDAEGGLPNLPRLRFSK-EGNLLA 645 (1096)
Q Consensus 571 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~--~~~~~~~~~~~v~~~~~s~-~~~~l~ 645 (1096)
.. +......+. ...+.++|+|+++.++++. ..+.|+.|++.. +... ..+.. ....-.+++.+ +|++.+
T Consensus 210 ~~--~~~~~~~~l--~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~---~g~PDGi~vD~e~G~lwv 282 (355)
T 3sre_A 210 PN--DVRVVAEGF--DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF---DTLVDNISVDPVTGDLWV 282 (355)
T ss_dssp TT--CCEEEEEEE--SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC---SSEEEEEEECTTTCCEEE
T ss_pred CC--eEEEeecCC--cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC---CCCCceEEEeCCCCcEEE
Confidence 63 322222222 1466799999998887765 578999999864 3322 22322 12456778888 487776
Q ss_pred EEECC
Q 001343 646 VTTAD 650 (1096)
Q Consensus 646 ~~~~d 650 (1096)
++..+
T Consensus 283 a~~~~ 287 (355)
T 3sre_A 283 GCHPN 287 (355)
T ss_dssp EEESC
T ss_pred EecCC
Confidence 66533
No 326
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.29 E-value=0.11 Score=55.72 Aligned_cols=160 Identities=12% Similarity=0.133 Sum_probs=101.2
Q ss_pred eeecCCCcEEEEecCCeEEEEEcccceEEEeecCC----CCCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeec
Q 001343 837 IALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSP----PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSI 912 (1096)
Q Consensus 837 l~~s~dg~~la~~~dg~v~iwd~~~~~~~~~~~~h----~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~ 912 (1096)
...+.+|.-++.+.++.||.-++......+.+... ...|..+..+| +|++||..+.. .|.|-.+..+. +..
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~~-~V~Vv~LP~~~---~~~ 100 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFNDN-EIFVMEVPWGY---SNV 100 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEECSS-EEEEEECCTTC---SCC
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEecCC-eEEEEEecCcc---ccC
Confidence 34567888888888899999998755555555443 23688999999 89999988665 68888887432 011
Q ss_pred cc-c--cccccee--eecCCCCCCCCCceEEEecCCc---EEEE-EecceEEEEEcccce-ecccc------ccCCCCCC
Q 001343 913 DT-W--EKRKSVT--IHIPAGKTPTGDTRVQFNADQV---RMLV-VHETQLAIYDASKME-RIRQW------TPQDALSA 976 (1096)
Q Consensus 913 ~~-~--~~~~~~~--~~~~~~~~~~~v~~v~fs~dg~---~l~~-~~d~~i~iwd~~~~~-~~~~~------~~~~~~~~ 976 (1096)
.. . .+-..+. +..........|..+.|+|-|. .|++ ..|+.|++||+.... ....+ .+......
T Consensus 101 ~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ 180 (452)
T 3pbp_A 101 EDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVN 180 (452)
T ss_dssp CCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCC
T ss_pred cccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccc
Confidence 10 0 0000111 1111111113899999998764 6777 899999999998521 11111 11111236
Q ss_pred CceEEEEeeCCcEEEEEe--cCCcEEE
Q 001343 977 PISCAVYSCNSQLVFATF--CDGNIGV 1001 (1096)
Q Consensus 977 ~i~~l~~s~dg~~la~~~--~dg~i~v 1001 (1096)
.|.+++|.++|-.|.+.+ ..|-|+-
T Consensus 181 ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 181 DITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred eEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 789999999887666644 7787764
No 327
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.26 E-value=0.4 Score=50.47 Aligned_cols=190 Identities=18% Similarity=0.206 Sum_probs=101.7
Q ss_pred CCcEEEEec-C-----CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCCC-----eEEEEeeccceeeee
Q 001343 842 NDSYVMSAT-G-----GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS-----TIHIYNVRVDELCVW 910 (1096)
Q Consensus 842 dg~~la~~~-d-----g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg-----~i~iw~~~~~~~~~w 910 (1096)
++++++.|+ + ..+.+||..+.+....-..........+..- ++++++.|+.++ .+.+||+.+.+ |
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~---W 136 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNE---W 136 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTE---E
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCe---E
Confidence 777888876 3 2489999877654332211111111112223 577888888664 46677777655 3
Q ss_pred eccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Ee-------cceEEEEEcccceecc--ccccCCCCCCCceE
Q 001343 911 SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VH-------ETQLAIYDASKMERIR--QWTPQDALSAPISC 980 (1096)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~-------d~~i~iwd~~~~~~~~--~~~~~~~~~~~i~~ 980 (1096)
.. +..+..... . ..++ .-+++.++. +. -..+.+||+.+.+-.. .+... ... .
T Consensus 137 ~~----------~~~~p~~r~-~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~--~ 198 (302)
T 2xn4_A 137 FH----------VAPMNTRRS-S-VGVG-VVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTR---RSG--A 198 (302)
T ss_dssp EE----------ECCCSSCCB-S-CEEE-EETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSC---CBS--C
T ss_pred ee----------cCCCCCccc-C-ceEE-EECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccc---ccc--c
Confidence 21 111111111 1 1222 236666666 43 2358899998765322 22211 111 1
Q ss_pred EEEeeCCcEEEEEecCC-----cEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCC---
Q 001343 981 AVYSCNSQLVFATFCDG-----NIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG--- 1052 (1096)
Q Consensus 981 l~~s~dg~~la~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg--- 1052 (1096)
.+..-++++++.|+.++ .+.+||+.+.+...... .+.. .. .. .++.. ++.+++.|+.++
T Consensus 199 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~~~~---r~---~~-~~~~~--~~~i~v~GG~~~~~~ 265 (302)
T 2xn4_A 199 GVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD----MNMC---RR---NA-GVCAV--NGLLYVVGGDDGSCN 265 (302)
T ss_dssp EEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC----CSSC---CB---SC-EEEEE--TTEEEEECCBCSSSB
T ss_pred cEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC----CCCc---cc---cC-eEEEE--CCEEEEECCcCCCcc
Confidence 22234788888887653 68899998876443221 1222 11 11 12222 578888888764
Q ss_pred --cEEEEccCCCCCcccc
Q 001343 1053 --SVKVMEPSESEGKWGV 1068 (1096)
Q Consensus 1053 --~i~vW~v~~~~~~~~~ 1068 (1096)
.+.+||+.+. +|..
T Consensus 266 ~~~v~~yd~~~~--~W~~ 281 (302)
T 2xn4_A 266 LASVEYYNPTTD--KWTV 281 (302)
T ss_dssp CCCEEEEETTTT--EEEE
T ss_pred cccEEEEcCCCC--eEEE
Confidence 4899998774 5654
No 328
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.25 E-value=0.89 Score=48.98 Aligned_cols=232 Identities=9% Similarity=0.102 Sum_probs=116.3
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC---CCEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GNYVG 422 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---~~~l~ 422 (1096)
..+.|+|.|+|+++++ +...|.|.+++.. +..... +. + .. .+..........|+|+|+ +.+|.
T Consensus 19 ~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~--~~--~-------~~-~v~~~g~~g~~gia~~pdf~~~g~lY 84 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAP--LS--G-------VP-DVWAHGQGGLLDVVLAPDFAQSRRIW 84 (353)
T ss_dssp SEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCC--CB--S-------CC-CCCCSTTCSEEEEEECTTHHHHCEEE
T ss_pred CcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeE--ec--C-------Cc-ccccCCCCCceeEEECCCCCCCCEEE
Confidence 5789999999984344 4578999999853 322100 00 0 00 112223456789999996 55554
Q ss_pred EEE-C-------CCeEEEEEccCCC-cc---ccce-eec-----ccccCEEEEEEecCCCcEEEEEEeC-----------
Q 001343 423 VAF-T-------KHLIQLYSYAGSN-DL---RQHS-QID-----AHVGAVNDLAFAYPNKLLCVVTCGD----------- 473 (1096)
Q Consensus 423 s~~-~-------dg~i~vwd~~~~~-~~---~~~~-~l~-----~h~~~v~~l~~s~d~~~~~l~s~s~----------- 473 (1096)
++. . ...|..|++..+. .+ +.+. .+. .|. -..++|.|||. +.++.+.
T Consensus 85 v~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~--Lyv~~Gd~~~~~~~q~~~ 160 (353)
T 2g8s_A 85 LSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGY--LFIALGENNQRPTAQDLD 160 (353)
T ss_dssp EEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSE--EEEEECCTTCGGGGGCTT
T ss_pred EEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCc--EEEEECCCCCCCccCCCC
Confidence 442 2 2356666665431 11 1110 111 132 35799999996 4444432
Q ss_pred --CCcEEEEEcCCce-------------EEEe-eCCCCCeEEEEeeecCCCcEEEEEECC--CeEEEEEcCCCC------
Q 001343 474 --DKLIKVWELSGRK-------------LFNF-EGHEAPVYSICPHHKENIQFIFSTAID--GKIKAWLYDTMG------ 529 (1096)
Q Consensus 474 --d~~i~iwd~~~~~-------------~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~------ 529 (1096)
.+.|.-.+.+|+. ...+ .++. ....++|.+. ++. |.++... +.=.|.-+..+.
T Consensus 161 ~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~-~g~-l~~~d~g~~~~dei~~i~~G~nyGwp~ 237 (353)
T 2g8s_A 161 KLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPW-SNA-LWLNEHGPRGGDEINIPQKGKNYGWPL 237 (353)
T ss_dssp SCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETT-TTE-EEEEEECSBSCEEEECCCTTCBCCTTT
T ss_pred CCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCc-CccceEEECC-CCC-EEEEecCCCCCcEEeEeccCCcCCCCC
Confidence 2456666644431 1111 2333 3567788663 333 4443322 111222111110
Q ss_pred -------------------------eeeEEeCCCCcEEEEEEcC-------CCCEEEEEeeccCCCCeEEEEeCCCCeee
Q 001343 530 -------------------------SRVDYDAPGHWCTTMLYSA-------DGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1096)
Q Consensus 530 -------------------------~~~~~~~~~~~i~~l~~s~-------~~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1096)
....+. +......++|.. +|.++++... .+.|...++..++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~----~~~v~~~~~~~~~~~ 312 (353)
T 2g8s_A 238 ATWGINYSGFKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALK----DKDVIVMSVNGDKVT 312 (353)
T ss_dssp BCSSBCTTSSCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETT----TTEEEEEEEETTEEE
T ss_pred ccCCCCCCCCccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEcc----CCEEEEEEeCCCeEe
Confidence 011111 122466777754 3555555433 667777777665443
Q ss_pred EE--EcCcCccceEEEEEeCCCCEEEEE
Q 001343 578 RT--YAGFRKKSNGVVQFDTTQNHFLAV 603 (1096)
Q Consensus 578 ~~--~~~~~~~~i~~~~~~~~~~~l~~~ 603 (1096)
.. +.......+..+++.|+|..+++.
T Consensus 313 ~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 313 EDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp EEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred eeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 32 211112256778899998855543
No 329
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.17 E-value=0.24 Score=53.24 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=94.1
Q ss_pred CCCceeecCCCceee-ecCCCCcceEEeecC-----CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeec-----
Q 001343 314 SAEEVTYSSSRHQTW-SLDDLPRTVAVSLHQ-----GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS----- 382 (1096)
Q Consensus 314 ~~~~v~~~~~~~~~~-~~~~~~~~~~~~l~h-----~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~----- 382 (1096)
+..++.+..++...| ++.+.+. .+.+.. -+.|..+..||+|+ +||.. .+..|.|-.+..+.....
T Consensus 31 n~t~i~~a~~n~iR~~~i~~~~~--Yk~L~~~~~i~f~~i~qlvlSpsG~-lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 31 NGTRIVFIQDNIIRWYNVLTDSL--YHSLNFSRHLVLDDTFHVISSTSGD-LLCLF-NDNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp TTTEEEEEETTEEEEEETTTCSS--CEEEECTTTCCCCTTCEEEECTTSS-EEEEE-CSSEEEEEECCTTCSCCCCHHHH
T ss_pred CCCEEEEEECCEEEEEECCCCCc--ceEEecCcccccCceeEEEECCCCC-EEEEe-cCCeEEEEEecCccccCcccccc
Confidence 355566655555554 4443332 334332 23788999999999 67765 467899988874432221
Q ss_pred cc--ceeecccccCccccccccccCCCCEEEEEEcC---CCCEEEEEECCCeEEEEEccCCCcccc-c------eeeccc
Q 001343 383 KP--FKIWDMAACSLPFQASIFKDVPISVSRVAWSP---DGNYVGVAFTKHLIQLYSYAGSNDLRQ-H------SQIDAH 450 (1096)
Q Consensus 383 ~~--~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---d~~~l~s~~~dg~i~vwd~~~~~~~~~-~------~~l~~h 450 (1096)
.. .+.+.+.. .......+|..+.|+| .+..|++-..|+.|++||+......-. + ..+...
T Consensus 107 ~~~q~~ty~l~~--------~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~ 178 (452)
T 3pbp_A 107 DAFQIFHYSIDE--------EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDAR 178 (452)
T ss_dssp HTTEEEEEEGGG--------CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSS
T ss_pred cccceeEEEcCC--------cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcc
Confidence 01 11222211 0111467899999999 467899999999999999986321110 0 011223
Q ss_pred ccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 451 VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 451 ~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
...|.+++|..++-.+++++.+..|.|+-.-
T Consensus 179 ~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 179 VNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp CCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred cceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 3678888998877655555555667665544
No 330
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.08 E-value=0.24 Score=61.61 Aligned_cols=240 Identities=13% Similarity=0.131 Sum_probs=140.1
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCC
Q 001343 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1096)
Q Consensus 349 ~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg 428 (1096)
+.-.+|..+ ++|.= ...++.|+|+++...+.++. -...|..=.|-.+. .|+..+ +.
T Consensus 70 sAIMnP~~~-iiALr-ag~~lQiFnl~~k~klks~~--------------------~~e~VvfWkWis~~-~l~lVT-~~ 125 (1630)
T 1xi4_A 70 SAIMNPASK-VIALK-AGKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISLN-TVALVT-DN 125 (1630)
T ss_pred hhccCCCcc-eEEEe-cCCeEEEeehHHhhhhcccc--------------------cCCCceEEEecCCC-eeEEEc-CC
Confidence 344677776 67765 37799999999877665421 12356666665443 444443 35
Q ss_pred eEEEEEccCCCccccceeeccc----ccCEEEEEEecCCCcEEEEEEe------CCCcEEEEEcCCceEEEeeCCCCCeE
Q 001343 429 LIQLYSYAGSNDLRQHSQIDAH----VGAVNDLAFAYPNKLLCVVTCG------DDKLIKVWELSGRKLFNFEGHEAPVY 498 (1096)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~l~~h----~~~v~~l~~s~d~~~~~l~s~s------~d~~i~iwd~~~~~~~~~~~~~~~v~ 498 (1096)
.|.-|++.+...... .+..| ...|..-.-+++.++ ++++|= -.|.+.+|....+.-+.+.||.+...
T Consensus 126 aVyHW~~~~~s~P~k--~fdR~~~L~~~QIinY~~d~~~kW-~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~ 202 (1630)
T 1xi4_A 126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 202 (1630)
T ss_pred eEEEeccCCCCccHH--HHhcchhcccCeeEEeeeCCCCCe-EEEEeeccCCCcccceeeeeecccccchhhhHhHhhhh
Confidence 899999975433222 23333 456777788888885 333332 35888999866666666777766554
Q ss_pred EEEeeecCCC-cEEEEEEC---CCeEEEEEcCCC---Ceee-----EEeC----CCCcEEEEEEcCCCCEEEEEeeccCC
Q 001343 499 SICPHHKENI-QFIFSTAI---DGKIKAWLYDTM---GSRV-----DYDA----PGHWCTTMLYSADGSRLFSCGTSKDG 562 (1096)
Q Consensus 499 ~~~~~~~~~~-~~l~s~~~---dg~i~iwd~~~~---~~~~-----~~~~----~~~~i~~l~~s~~~~~l~~~~~~~~~ 562 (1096)
.+........ ..+..+.. .+.++|-++... ...+ .+.. .+.-..++..++....+...+.
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk---- 278 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 278 (1630)
T ss_pred eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----
Confidence 4443211111 22222221 278888888543 1111 1111 1234557778887777777776
Q ss_pred CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 001343 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1096)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1096)
.|.+.++|+.++.++..-+-... .+...+......-++.....|.|.-..++....+
T Consensus 279 ~G~~~~~d~~t~~~i~~~ris~~-~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 279 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred CceEEEEecccchhhhhccccCC-ceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 89999999999988766543333 4444443333344455556666665555544433
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.03 E-value=0.35 Score=51.33 Aligned_cols=226 Identities=9% Similarity=-0.015 Sum_probs=109.4
Q ss_pred EEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC-----C------CcEEEEE-cCCceEE
Q 001343 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----D------KLIKVWE-LSGRKLF 488 (1096)
Q Consensus 421 l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~-----d------~~i~iwd-~~~~~~~ 488 (1096)
++.|+ ..+.+||..+++-.. ..+..............++. +++.|+. . ..+.+|| .+++- .
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W-~ 80 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW-L 80 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEE-E
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeE-E
Confidence 34454 578899988865322 12322222223333344566 6666663 1 1267788 44432 2
Q ss_pred EeeCCCCCeE--EEEeeecCCCcEEEEEECC--------CeEEEEEcCCCCeeeEEeCCCCcE-EEEEEcCCCCEEEEEe
Q 001343 489 NFEGHEAPVY--SICPHHKENIQFIFSTAID--------GKIKAWLYDTMGSRVDYDAPGHWC-TTMLYSADGSRLFSCG 557 (1096)
Q Consensus 489 ~~~~~~~~v~--~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~l~~~~ 557 (1096)
.+.....+-. +++. . ++.+++.|+.+ ..+.+||..+.+-...-....... .+++. -+++.++.++
T Consensus 81 ~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 156 (315)
T 4asc_A 81 GMPPLPSPRCLFGLGE--A-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGG 156 (315)
T ss_dssp ECCCBSSCEESCEEEE--E-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECC
T ss_pred ECCCCCcchhceeEEE--E-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeC
Confidence 2221111111 1221 1 44666777642 357788877653222111111111 12222 3555666665
Q ss_pred ecc--CCCCeEEEEeCCCCeeeEEEcCcCcc-ceEEEEEeCCCCEEEEEEcCC-----eEEEEeCCCCeEEEEeecCCCC
Q 001343 558 TSK--DGDSFLVEWNESEGTIKRTYAGFRKK-SNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNILTSTDAEGGL 629 (1096)
Q Consensus 558 ~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~ 629 (1096)
... .....+.+||..+.+-...-...... ...++.+ ++..++.|+.++ .+.+||..+.+....-.....
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~- 233 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE- 233 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-
T ss_pred CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-
Confidence 411 11357889998877544322111111 1122222 566777777544 588999988765554332222
Q ss_pred CCccEEEEeCCCCEEEEEECCC--------------cEEEEEcCCC
Q 001343 630 PNLPRLRFSKEGNLLAVTTADN--------------GFKILANAIG 661 (1096)
Q Consensus 630 ~~v~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~ 661 (1096)
.....+..-++++++.|+.++ .+.+||+.+.
T Consensus 234 -r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 234 -RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp -CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred -ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 222222223667777777532 3667777655
No 332
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.90 E-value=1.6 Score=48.49 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=54.0
Q ss_pred CCCeeeeeecCCCcEEEEec--CCeEEEEEcccc------eE-------EEeecCCCCCeeEEEEecCCCcEEEEeeCCC
Q 001343 831 EEAVPCIALSKNDSYVMSAT--GGKISLFNMMTF------KV-------MTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1096)
Q Consensus 831 ~~~v~~l~~s~dg~~la~~~--dg~v~iwd~~~~------~~-------~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg 895 (1096)
......+.++|||++++.++ +.++.|+|+... +. ....+ -.-.....+|.+ +|+-..+-.-|.
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidS 399 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDS 399 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTT
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecc
Confidence 34456688999999999988 688999998642 11 22232 233566889999 887677778999
Q ss_pred eEEEEeeccc
Q 001343 896 TIHIYNVRVD 905 (1096)
Q Consensus 896 ~i~iw~~~~~ 905 (1096)
.|.-|++...
T Consensus 400 qvvkWni~~a 409 (638)
T 3sbq_A 400 QVVKWNMEEA 409 (638)
T ss_dssp EEEEEEHHHH
T ss_pred eEEEEeccHH
Confidence 9999999864
No 333
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.80 E-value=0.47 Score=50.15 Aligned_cols=229 Identities=7% Similarity=-0.017 Sum_probs=111.1
Q ss_pred CCCEEEEEECC----CeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC----C-----CcEEEEE-c
Q 001343 417 DGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD----D-----KLIKVWE-L 482 (1096)
Q Consensus 417 d~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~----d-----~~i~iwd-~ 482 (1096)
++..++.|+.+ ..+.+||..+++-.. +..+......- +++. -++. +++.|+. + ..+.+|| .
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~~-~~~~--lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGL-AGCV-VGGL--LYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSC-EEEE-ETTE--EEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccc-eEEE-ECCE--EEEECCCcCCCCCCeecceEEEECCC
Confidence 56677777632 368889987754222 11111111111 1222 2454 5666665 2 4688888 4
Q ss_pred CCceEEEeeCC---CCCeEEEEeeecCCCcEEEEEECC-----CeEEEEEcCCCCeeeEEeCCC--CcEEEEEEcCCCCE
Q 001343 483 SGRKLFNFEGH---EAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSR 552 (1096)
Q Consensus 483 ~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~~~~ 552 (1096)
+.+- ..+... ...-..+.+ ++.+++.|+.+ ..+.+||..+.+-...-.... .....+.+ +++.
T Consensus 99 ~~~W-~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 171 (308)
T 1zgk_A 99 TNQW-SPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLL 171 (308)
T ss_dssp TTEE-EECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred CCeE-eECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEE
Confidence 4432 222111 111112222 44677776644 357778876554322111111 11222222 5666
Q ss_pred EEEEeeccCC-CCeEEEEeCCCCeeeEEEcCcCcc-ceEEEEEeCCCCEEEEEEcC-----CeEEEEeCCCCeEEEEeec
Q 001343 553 LFSCGTSKDG-DSFLVEWNESEGTIKRTYAGFRKK-SNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDA 625 (1096)
Q Consensus 553 l~~~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~ 625 (1096)
++.++.+... ...+.+||+.+.+-...-...... ....+.+ ++..++.|+.+ ..+.+||+.+.+....-..
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 249 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 249 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence 6666543221 356889998877544321111111 1222222 56666777654 5699999988765543322
Q ss_pred CCCCCCccEEEEeCCCCEEEEEECC-----CcEEEEEcCCC
Q 001343 626 EGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANAIG 661 (1096)
Q Consensus 626 ~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 661 (1096)
.... .-.+++. -++++++.|+.+ ..+.+||+.+.
T Consensus 250 p~~r-~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 250 KHRR-SALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp SSCC-BSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCc-cceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 2111 1122222 266777777754 34677777655
No 334
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.71 E-value=0.81 Score=48.51 Aligned_cols=221 Identities=11% Similarity=0.041 Sum_probs=103.7
Q ss_pred eEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeC----CC-------cEEEEE-cCCceEEEeeCCCCC
Q 001343 429 LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD----DK-------LIKVWE-LSGRKLFNFEGHEAP 496 (1096)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~----d~-------~i~iwd-~~~~~~~~~~~~~~~ 496 (1096)
.+..||..+++-... .+..............++. +++.|+. ++ .+.++| .+++- ..+.....+
T Consensus 25 ~~~~yd~~~~~W~~~--~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~ 99 (318)
T 2woz_A 25 AAVAYDPMENECYLT--ALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW-VGLPPLPSA 99 (318)
T ss_dssp EEEEEETTTTEEEEE--EECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEE-EECSCBSSC
T ss_pred ceEEECCCCCceecc--cCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcE-EECCCCCcc
Confidence 478889887653321 2221111222223344566 6777773 12 167778 44432 222111111
Q ss_pred e--EEEEeeecCCCcEEEEEECC-------CeEEEEEcCCCCeeeEEeCCCCcE-EEEEEcCCCCEEEEEeeccC--CCC
Q 001343 497 V--YSICPHHKENIQFIFSTAID-------GKIKAWLYDTMGSRVDYDAPGHWC-TTMLYSADGSRLFSCGTSKD--GDS 564 (1096)
Q Consensus 497 v--~~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~l~~~~~~~~--~~~ 564 (1096)
- .+++.. ++.+++.|+.+ ..+.+||..+.+-...-....... .+++. .+++.++.|+.... ...
T Consensus 100 r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 175 (318)
T 2woz_A 100 RCLFGLGEV---DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTN 175 (318)
T ss_dssp BCSCEEEEE---TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCC
T ss_pred ccccceEEE---CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccc
Confidence 1 122221 44677777754 246777776554332211111111 11222 45666666664221 134
Q ss_pred eEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcC-----CeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC
Q 001343 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1096)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1096)
.+.+||+.+.+-...-..........++. -++..++.|+.+ ..+.+||+.+.+....-..... .....+..-
T Consensus 176 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~ 252 (318)
T 2woz_A 176 RVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVSL 252 (318)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEEE
T ss_pred eEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEEE
Confidence 68999998876544322111111112222 255666777643 3578899888765443222211 112122223
Q ss_pred CCCEEEEEECC--------------CcEEEEEcCCC
Q 001343 640 EGNLLAVTTAD--------------NGFKILANAIG 661 (1096)
Q Consensus 640 ~~~~l~~~~~d--------------g~i~iwd~~~~ 661 (1096)
++.+++.|+.+ ..+.+||+.+.
T Consensus 253 ~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 253 AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 56677777653 34666776554
No 335
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.66 E-value=0.69 Score=48.79 Aligned_cols=190 Identities=16% Similarity=0.180 Sum_probs=99.5
Q ss_pred CCcEEEEecC----------CeEEEEEcccceEEEeecCCCCCeeEEEEecCCCcEEEEeeCC-----CeEEEEeeccce
Q 001343 842 NDSYVMSATG----------GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED-----STIHIYNVRVDE 906 (1096)
Q Consensus 842 dg~~la~~~d----------g~v~iwd~~~~~~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~d-----g~i~iw~~~~~~ 906 (1096)
++++++.|+. ..+.+||..+.+....-..........+..- ++++++.|+.+ ..+.+||..+.+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 148 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDE 148 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCe
Confidence 6777777652 3488999877654332111111111112223 57788888754 357778877765
Q ss_pred eeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Eec-----ceEEEEEcccceecc--ccccCCCCCCCc
Q 001343 907 LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHE-----TQLAIYDASKMERIR--QWTPQDALSAPI 978 (1096)
Q Consensus 907 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d-----~~i~iwd~~~~~~~~--~~~~~~~~~~~i 978 (1096)
|..- ..+..... .-..+. -+++.++. +.+ ..+.+||+.+.+-.. .+... ...-
T Consensus 149 ---W~~~----------~~~p~~r~-~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~~ 209 (308)
T 1zgk_A 149 ---WHLV----------APMLTRRI-GVGVAV--LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI---RSGA 209 (308)
T ss_dssp ---EEEC----------CCCSSCCB-SCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC---CBSC
T ss_pred ---EeEC----------CCCCcccc-ceEEEE--ECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCc---cccc
Confidence 3211 11111111 112222 25666666 432 468999997665322 22211 1111
Q ss_pred eEEEEeeCCcEEEEEecC-----CcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCC-
Q 001343 979 SCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG- 1052 (1096)
Q Consensus 979 ~~l~~s~dg~~la~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg- 1052 (1096)
.++ .-++++++.|+.+ ..+.+||+.+.+.... . ..|.. .. -. +++.. ++.+++.|+.++
T Consensus 210 ~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~---~~p~~---r~--~~--~~~~~--~~~i~v~GG~~~~ 274 (308)
T 1zgk_A 210 GVC--VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV-A---PMKHR---RS--AL--GITVH--QGRIYVLGGYDGH 274 (308)
T ss_dssp EEE--EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC-C---CCSSC---CB--SC--EEEEE--TTEEEEECCBCSS
T ss_pred eEE--EECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC-C---CCCCC---cc--ce--EEEEE--CCEEEEEcCcCCC
Confidence 222 2378888888765 4589999988764322 1 12222 11 11 12222 578888888653
Q ss_pred ----cEEEEccCCCCCcccc
Q 001343 1053 ----SVKVMEPSESEGKWGV 1068 (1096)
Q Consensus 1053 ----~i~vW~v~~~~~~~~~ 1068 (1096)
.+.+||+.+. +|..
T Consensus 275 ~~~~~v~~yd~~~~--~W~~ 292 (308)
T 1zgk_A 275 TFLDSVECYDPDTD--TWSE 292 (308)
T ss_dssp CBCCEEEEEETTTT--EEEE
T ss_pred cccceEEEEcCCCC--EEee
Confidence 5788888764 4554
No 336
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.56 E-value=0.01 Score=47.03 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHhhCCCccH--HHHHHHHhccCHHHHHHHHcC
Q 001343 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFNM--KYFEEKVQAGDWDEVEKYLSG 59 (1096)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~~--~~~~~~i~~g~w~~~~~~l~~ 59 (1096)
++|+.+-|++||..+||.+++.+|.+|.++..+- ..-..-+++-.|..++++-++
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKK 66 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 66 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHH
Confidence 5799999999999999999999999999988752 112344555566666655444
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.55 E-value=0.81 Score=48.51 Aligned_cols=191 Identities=12% Similarity=0.106 Sum_probs=98.4
Q ss_pred ecCCCcEEEEecC-----C-------eEEEEEcccceEEEe--ecCCCCCeeEEEEecCCCcEEEEeeCC-------CeE
Q 001343 839 LSKNDSYVMSATG-----G-------KISLFNMMTFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGTED-------STI 897 (1096)
Q Consensus 839 ~s~dg~~la~~~d-----g-------~v~iwd~~~~~~~~~--~~~h~~~i~~l~~s~~d~~~l~s~~~d-------g~i 897 (1096)
...++++++.|+. + .+.+||..+.+.... +...... .+++. - ++++++.|+.+ ..+
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~-~~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGE-V-DDKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEE-E-TTEEEEEEEEBTTTCCEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEE-E-CCEEEEEcCccCCCCcccceE
Confidence 3457777777761 1 177888877655332 2111111 12222 2 57788888764 346
Q ss_pred EEEeeccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Ee------cceEEEEEcccceecc--cc
Q 001343 898 HIYNVRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VH------ETQLAIYDASKMERIR--QW 968 (1096)
Q Consensus 898 ~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~------d~~i~iwd~~~~~~~~--~~ 968 (1096)
.+||..+.+ |..- ..+.... ....+...+++.++. +. -..+.+||+.+.+-.. .+
T Consensus 130 ~~yd~~~~~---W~~~----------~~~p~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~ 193 (318)
T 2woz_A 130 LCYDPVAAK---WSEV----------KNLPIKV---YGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPM 193 (318)
T ss_dssp EEEETTTTE---EEEE----------CCCSSCE---ESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCC
T ss_pred EEEeCCCCC---EeEC----------CCCCCcc---cccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCC
Confidence 777777665 3211 1111111 111122256666666 43 2358999998765322 22
Q ss_pred ccCCCCCCCceEEEEeeCCcEEEEEecC-----CcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCc
Q 001343 969 TPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN 1043 (1096)
Q Consensus 969 ~~~~~~~~~i~~l~~s~dg~~la~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~ 1043 (1096)
... ... .++ ..-++++++.|+.+ ..+.+||+.+.+-... . ..|.. ... . .++.. ++.
T Consensus 194 p~~---r~~-~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~---~~p~~---r~~--~--~~~~~--~~~ 255 (318)
T 2woz_A 194 KTP---RSM-FGV-AIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-T---EFPQE---RSS--I--SLVSL--AGS 255 (318)
T ss_dssp SSC---CBS-CEE-EEETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-C---CCSSC---CBS--C--EEEEE--TTE
T ss_pred CCC---ccc-ceE-EEECCEEEEEcCcCCCCccceEEEEECCCCeEEEC-C---CCCCc---ccc--e--EEEEE--CCE
Confidence 211 111 122 23477888878754 3477899888764322 1 12222 111 1 12222 578
Q ss_pred eEEEEeeC--------------CcEEEEccCCCCCcccc
Q 001343 1044 QFAIGLTD--------------GSVKVMEPSESEGKWGV 1068 (1096)
Q Consensus 1044 ~l~s~~~d--------------g~i~vW~v~~~~~~~~~ 1068 (1096)
+++.|+.+ ..+.+||+.+ .+|..
T Consensus 256 i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~--~~W~~ 292 (318)
T 2woz_A 256 LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK--KEWAG 292 (318)
T ss_dssp EEEECCBCCBC----CCBCCBCCCEEEEETTT--TEEEE
T ss_pred EEEECCeeccCCCCceeccceeeeEEEEeCCC--CEehh
Confidence 88888764 3578888876 44554
No 338
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.10 E-value=4.2 Score=43.12 Aligned_cols=236 Identities=13% Similarity=0.057 Sum_probs=118.9
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC---CC
Q 001343 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GN 419 (1096)
Q Consensus 343 h~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---~~ 419 (1096)
.-...+.++|.|||+ ++++--..|.|++++..+++.... . . ...++.........|+|+|| +.
T Consensus 30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v---~--~--------~~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTEL---G--E--------VPGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE---E--E--------CTTCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeee---c--c--------cCceeecCCCCceeeEeccccccCC
Confidence 345789999999998 677654489999998765553210 0 0 00123345667899999996 44
Q ss_pred EEEEE-E--CCCeEEEEEccCCC----c---cccce-eec-ccccCEEEEEEecCCCcEEEEEEeC-------------C
Q 001343 420 YVGVA-F--TKHLIQLYSYAGSN----D---LRQHS-QID-AHVGAVNDLAFAYPNKLLCVVTCGD-------------D 474 (1096)
Q Consensus 420 ~l~s~-~--~dg~i~vwd~~~~~----~---~~~~~-~l~-~h~~~v~~l~~s~d~~~~~l~s~s~-------------d 474 (1096)
+|.+. + .++.|.-|.+..+. . .+.+. .+. +....-..|.|.|||. +.++.+. .
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~Gd~~~~~~~qd~~~~~ 173 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTGESGDTGLSQDRKSLG 173 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECBCTTCGGGTTCTTCST
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEECCCCCCccccCCCCCC
Confidence 44433 2 34566667665521 1 11111 121 1111346799999997 5555432 2
Q ss_pred CcEEEEEcCCc----------eEEEeeCCCCCeEEEEeeecCCCcEEEEE-ECCCeEEEEEcCCCCe-------------
Q 001343 475 KLIKVWELSGR----------KLFNFEGHEAPVYSICPHHKENIQFIFST-AIDGKIKAWLYDTMGS------------- 530 (1096)
Q Consensus 475 ~~i~iwd~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~------------- 530 (1096)
|.|.-.+.+|+ .+.. .+|.. ...++|++ ++.+.++- +.|+.-.|--+..+..
T Consensus 174 G~IlRi~~dG~ip~~nPf~~~~i~a-~G~RN-p~Gla~dp--~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~ 249 (347)
T 3das_A 174 GKILRMTPDGEPAPGNPFPGSPVYS-YGHRN-VQGLAWDD--KQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGS 249 (347)
T ss_dssp TCEEEECTTSSBCTTCSSTTCCEEE-BCCSB-CCEEEECT--TCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCT
T ss_pred CEEEEEeCCCCccCCCCCCCCeEEe-eCCCC-cceEEECC--CCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCc
Confidence 44444454443 1222 24543 45778876 44444332 2233222222221111
Q ss_pred -----eeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCee----eEEEcCcCccceEEEEEeCCCCEEE
Q 001343 531 -----RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI----KRTYAGFRKKSNGVVQFDTTQNHFL 601 (1096)
Q Consensus 531 -----~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~ 601 (1096)
...+..+......++|. +|..+..... ...|....+..... ...+.+... .+..++..|+|..++
T Consensus 250 ~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~----~~~l~~v~~~~~~~~~~~e~~l~~~~g-R~~dv~~~pDG~lyv 323 (347)
T 3das_A 250 GFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLR----GERLWRIPLKGTAAAADPQAFLEGEYG-RLRTVAPAGGDKLWL 323 (347)
T ss_dssp TCCCCSEEECTTTCCEEEEEEE-TTEEEEEEST----TCSEEEEEEETTEESSCCEEESTTTSS-CEEEEEEEETTEEEE
T ss_pred cccCCcEecCCCCCCCcceEEE-cCceeecccc----CCEEEEEEecCCceecceEEeecCCCC-CccEEEECCCCcEEE
Confidence 11222111245566665 3444444332 44555555544332 222333222 577788888876555
Q ss_pred EEE
Q 001343 602 AVG 604 (1096)
Q Consensus 602 ~~~ 604 (1096)
+..
T Consensus 324 ~td 326 (347)
T 3das_A 324 VTS 326 (347)
T ss_dssp EEC
T ss_pred EEc
Confidence 543
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.08 E-value=1.2 Score=55.56 Aligned_cols=257 Identities=9% Similarity=0.144 Sum_probs=140.1
Q ss_pred CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEECCCeEEEEEccCCCcccccee
Q 001343 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ 446 (1096)
Q Consensus 367 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 446 (1096)
.+|.|-|+.++..+..+++ .--+.-.+|..+.||.-. ..++.|+|+++...++..
T Consensus 48 ~~vvIidl~~~~~~~rrpi----------------------~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~-- 102 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRPI----------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH-- 102 (1630)
T ss_pred ceEEEEECCCCCCcccccc----------------------cchhhccCCCcceEEEec-CCeEEEeehHHhhhhccc--
Confidence 3788889888765533211 112334566666666554 579999999987766532
Q ss_pred ecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEEc--CCceEEEeeCC----CCCeEEEEeeecCCCcEEEEEE-----
Q 001343 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL--SGRKLFNFEGH----EAPVYSICPHHKENIQFIFSTA----- 515 (1096)
Q Consensus 447 l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~--~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~~----- 515 (1096)
....+|.-=.|-.+.. +-||| +..|+.|+. +..+.+.|..| ...|..-.. +.+.++++..|
T Consensus 103 --~~~e~VvfWkWis~~~-l~lVT---~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~--d~~~kW~~l~gi~~~~ 174 (1630)
T 1xi4_A 103 --TMTDDVTFWKWISLNT-VALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRT--DAKQKWLLLTGISAQQ 174 (1630)
T ss_pred --ccCCCceEEEecCCCe-eEEEc---CCeEEEeccCCCCccHHHHhcchhcccCeeEEeee--CCCCCeEEEEeeccCC
Confidence 1244677777776554 13343 668999994 33555555544 233433333 44556665443
Q ss_pred --CCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEc--CC-CCEEEEEeeccCCCCeEEEEeCCCC---ee------eEEEc
Q 001343 516 --IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYS--AD-GSRLFSCGTSKDGDSFLVEWNESEG---TI------KRTYA 581 (1096)
Q Consensus 516 --~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s--~~-~~~l~~~~~~~~~~~~i~iwd~~~~---~~------~~~~~ 581 (1096)
..|.+.+|..+..... .+.+|......+... +. ...++.+..... .+.+.+.++... .. +..+-
T Consensus 175 ~~v~G~mQLyS~er~~sQ-~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~-g~kLhi~Ei~~~~~~~~~f~kk~~~~~~ 252 (1630)
T 1xi4_A 175 NRVVGAMQLYSVDRKVSQ-PIEGHAASFAQFKMEGNAEESTLFCFAVRGQA-GGKLHIIEVGTPPTGNQPFPKKAVDVFF 252 (1630)
T ss_pred Ccccceeeeeecccccch-hhhHhHhhhheeccCCCCCCceEEEEEEecCC-CceEEEEecCCCccCCCCCccccccccC
Confidence 3588889987644321 223333322222221 11 222333322222 367888887542 11 11111
Q ss_pred Cc--CccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 582 GF--RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 582 ~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
.. ......++..++....++..+.-|.|++||+.++..+..-+.... .|...+.+....-++.....|.|.-..+.
T Consensus 253 ~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~--~iF~~~~~~~~~g~~~vnr~G~vl~v~v~ 330 (1630)
T 1xi4_A 253 PPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (1630)
T ss_pred CcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCC--ceEEeccCCCCCceEEEcCCceEEEEEEc
Confidence 11 111233477778778888999999999999999988766554433 44443433332333333455655554444
Q ss_pred C
Q 001343 660 I 660 (1096)
Q Consensus 660 ~ 660 (1096)
.
T Consensus 331 ~ 331 (1630)
T 1xi4_A 331 E 331 (1630)
T ss_pred c
Confidence 3
No 340
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.03 E-value=1.3 Score=46.25 Aligned_cols=199 Identities=9% Similarity=0.054 Sum_probs=107.2
Q ss_pred ecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCCCCCeEEEEeeecCCCcEEEEEECC--------------CeEEEEEc
Q 001343 460 AYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID--------------GKIKAWLY 525 (1096)
Q Consensus 460 s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--------------g~i~iwd~ 525 (1096)
+.++..+++.....++.|...+.+|.....+.... +. .+++ ++.+|+-+... ..|+..++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~--~~--~i~~--~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDT--AM--YINA--DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEEE--EE--EEEE--CSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCCc--ee--eEEE--cCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 34566322222233556666666665555554221 22 2334 44566555432 45677777
Q ss_pred CCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEc
Q 001343 526 DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (1096)
Q Consensus 526 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 605 (1096)
+..+........ ...++++++.|+....+.++...|+..++..... ..+..+.. ..++++++.|+-.+.
T Consensus 96 dg~~~~~l~~~~-----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~~-----~~~~~~g~~iy~t~~ 164 (302)
T 3s25_A 96 NGHGSTVLDPDP-----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHYL-----FTCNTSDRYFYYNNP 164 (302)
T ss_dssp TSCCCEEEECSC-----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSCC-----CCSEEETTEEEEECT
T ss_pred CCCcceEeecCC-----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCCc-----eEeeEECCEEEEEeC
Confidence 655433322211 2367789999887652233467788888875443 33333322 345678888876664
Q ss_pred -CCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEEECCC--cEEEEEcCCCccccccccCCCcccccCccee
Q 001343 606 -DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN--GFKILANAIGLRSLRAVENPPFEALRTPIES 682 (1096)
Q Consensus 606 -dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 682 (1096)
...|+..++..+.....+.. .. ...+.|++..|+-....+ .|..-++... ....+... .+
T Consensus 165 g~~~Iy~~~l~g~~~~~l~~~-----~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~--~~~~Lt~~-------~~-- 227 (302)
T 3s25_A 165 KNGQLYRYDTASQSEALFYDC-----NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNP--NPVVLTEA-------NI-- 227 (302)
T ss_dssp TTCCEEEEETTTTEEEEEECS-----CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSC--CCEECSCS-------CE--
T ss_pred CCceEEEEECCCCCEEEEeCC-----Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCC--CeEEEeCC-------Cc--
Confidence 67899989877765544331 12 234668888888766543 3444444433 12222211 11
Q ss_pred EEeecCCCeE
Q 001343 683 VALKVSASSA 692 (1096)
Q Consensus 683 ~~~s~~g~~l 692 (1096)
..++|+++.+
T Consensus 228 ~~~~~~g~~I 237 (302)
T 3s25_A 228 EHYNVYGSLI 237 (302)
T ss_dssp EEEEEETTEE
T ss_pred ceEEECCCEE
Confidence 2477888777
No 341
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.94 E-value=3.4 Score=45.92 Aligned_cols=277 Identities=13% Similarity=0.101 Sum_probs=144.2
Q ss_pred cEEEEEeCCCeEEEEecCCCCeeecccc------eeecccccCccccccccccCCCCEE--EEEEcC---CCCEEEEEEC
Q 001343 358 TLLLVGSSNGEITLWELAMRDRLVSKPF------KIWDMAACSLPFQASIFKDVPISVS--RVAWSP---DGNYVGVAFT 426 (1096)
Q Consensus 358 ~llasg~~dg~I~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~h~~~V~--~l~~sp---d~~~l~s~~~ 426 (1096)
|.+.||+..|.|+|+-+-+++.+...++ .-|-+...+..+....-.-..+... .+++.. ||+||.+-..
T Consensus 71 y~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdk 150 (638)
T 3sbq_A 71 YGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDK 150 (638)
T ss_dssp EEEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEET
T ss_pred EEEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecC
Confidence 4678999999999999999998865221 1122211111111000000112222 233332 6889988764
Q ss_pred -CCeEEEEEccCCCccccceeecccccCEEEEEEe--cCCCcEEEEEEeCC-------CcE---------EEEE-c---C
Q 001343 427 -KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA--YPNKLLCVVTCGDD-------KLI---------KVWE-L---S 483 (1096)
Q Consensus 427 -dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s--~d~~~~~l~s~s~d-------~~i---------~iwd-~---~ 483 (1096)
+..|-..+++.-++-+.+ ++ .....+..++|- |+.. +++.++.. |.. .+|. . +
T Consensus 151 an~RvAri~l~~~~~d~Ii-~i-Pn~~~~Hg~~~~~~p~T~--yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~t 226 (638)
T 3sbq_A 151 ANSRVARIRLDIMKCDKMI-TV-PNVQAIHGLRLQKVPHTK--YVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAET 226 (638)
T ss_dssp TTTEEEEEETTTTEEEEEE-EC-TTCSCEEEEEECCSSBCC--EEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTT
T ss_pred CCcceEEEECCcEeeceeE-eC-CCCcCcccccccccCCcc--EEEecceeeccCCCCCcccccCChhhceEEEEEcCCc
Confidence 467888888776554322 22 355678888886 5666 66666532 221 1221 1 1
Q ss_pred CceEEEeeCCCCCeEEEEeeecCCCcEEEEEECCC---------------eEEEEE------------------------
Q 001343 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---------------KIKAWL------------------------ 524 (1096)
Q Consensus 484 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---------------~i~iwd------------------------ 524 (1096)
.+....+.- .+..-.+.. +.++.+.++.+.+. .+.+++
T Consensus 227 m~v~~Qv~v-~gnld~~~~--~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~Vi 303 (638)
T 3sbq_A 227 MEMAFQVIV-DGNLDNTDA--DYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVL 303 (638)
T ss_dssp CSEEEEEEE-SSCCCCEEE--CSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEE
T ss_pred cEEEEEEEc-CCChhhcCC--CCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEE
Confidence 111111100 001111111 12344555444221 233443
Q ss_pred -cCC----CCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCC------ee-------eEEEcCcCcc
Q 001343 525 -YDT----MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG------TI-------KRTYAGFRKK 586 (1096)
Q Consensus 525 -~~~----~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~------~~-------~~~~~~~~~~ 586 (1096)
.+. ......+.........+.++|||+++++++. .+.++.++|.+.. +. ..... -+-
T Consensus 304 D~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GK---LsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~Gl 378 (638)
T 3sbq_A 304 DGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGK---LSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--LGL 378 (638)
T ss_dssp ECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECT---TSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--CCS
T ss_pred ccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCC---CCCeEEEEEeehhhhhhhccccCcccceEeecc--CCC
Confidence 332 1111112122223456889999999999875 4778999998741 11 11222 122
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC----------eEEEEeecCCCCCCccEEEE------eCCCCEEEEEEC
Q 001343 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----------NILTSTDAEGGLPNLPRLRF------SKEGNLLAVTTA 649 (1096)
Q Consensus 587 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~------s~~~~~l~~~~~ 649 (1096)
.....+|.++|+...+.--|..|.-|++... ..+..+..|-. +-.+.- .++|++|++...
T Consensus 379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq---pGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ---PGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC---EEEEEETTTTSTTCCSCEEEEEES
T ss_pred cccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC---CcccccCCCccCCCCccEEEEecc
Confidence 3455889999955555558999999998753 45566655532 222222 568888887753
No 342
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.41 E-value=0.2 Score=53.02 Aligned_cols=213 Identities=9% Similarity=0.029 Sum_probs=106.1
Q ss_pred CCcEEEEecCCeEEEEEcccceEEEeecCC-CCCeeEEEE--ecCCCcEEEEe-eCCCeEEEEeeccceeeeeecccccc
Q 001343 842 NDSYVMSATGGKISLFNMMTFKVMTTFMSP-PPASTFLAF--HPQDNNIIAIG-TEDSTIHIYNVRVDELCVWSIDTWEK 917 (1096)
Q Consensus 842 dg~~la~~~dg~v~iwd~~~~~~~~~~~~h-~~~i~~l~~--s~~d~~~l~s~-~~dg~i~iw~~~~~~~~~w~~~~~~~ 917 (1096)
++..++...||.|.-.|..+|+.+-+++.. ..++....- .+.++..++.. +.||.|..++..+|. ..|.......
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~-~~~~~~~~~l 88 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL-QKLPLSIRQL 88 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE-EEEEEEHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc-EEeeeccccc
Confidence 344444444899999999899888887543 112221110 01133444444 689999999888775 3443332111
Q ss_pred ccceeeecCCCCCCCCCc-eE-EEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCC-----ceEEEEe-----e
Q 001343 918 RKSVTIHIPAGKTPTGDT-RV-QFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAP-----ISCAVYS-----C 985 (1096)
Q Consensus 918 ~~~~~~~~~~~~~~~~v~-~v-~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-----i~~l~~s-----~ 985 (1096)
-...++.- .+ . .|. .. ..+.+|..++.+.++.+...|+.+|+.+-++..... ... ..+.... .
T Consensus 89 v~~SP~~~-~~--~-pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~e~~~~~~d~~~d~ 163 (339)
T 2be1_A 89 VSTSPLHL-KT--N-IVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK-NGYFGSQSVDCSPEEKIKLQE 163 (339)
T ss_dssp HTTCSEEE-EC--C-----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB-CC-------------------
T ss_pred eecccccc-CC--C-ceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC-ccccccccccccccccccccc
Confidence 00000000 00 0 000 00 002344433448999999999999998877654320 010 1111111 1
Q ss_pred CCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEEeeCCcEEEEccCCCCCc
Q 001343 986 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGK 1065 (1096)
Q Consensus 986 dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~~~dg~i~vW~v~~~~~~ 1065 (1096)
.+..|+.+..+..+.+.+ .+|+ +.......+.+.. -...+.. .-..+. |+.. +.++.||.|.-.|..+|+..
T Consensus 164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~---~~~~~~~-~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~ 235 (339)
T 2be1_A 164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNV---LDVPLAL-QNTFSK-DGMC-IAPFRDKSLLASDLDFRIAR 235 (339)
T ss_dssp -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCT---TTHHHHT-TCSSCS-SSCC-EEEETTTEEEEECSTTCCEE
T ss_pred CCCeEEEecceEEEEEEC-CCCC-eEEEecccccccc---ccccccc-cccccc-CCcE-EEECCCCEEEEEECCCCcEE
Confidence 235677788888887777 4554 2211111111111 0000100 001122 4555 55789999999999999988
Q ss_pred c-cc
Q 001343 1066 W-GV 1068 (1096)
Q Consensus 1066 ~-~~ 1068 (1096)
| ..
T Consensus 236 W~~~ 239 (339)
T 2be1_A 236 WVSP 239 (339)
T ss_dssp EECC
T ss_pred EEee
Confidence 9 44
No 343
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.40 E-value=0.14 Score=49.60 Aligned_cols=110 Identities=14% Similarity=0.055 Sum_probs=65.8
Q ss_pred CCeeeeeecCCCcEEEEecCCeEEEEEcccceE------EEeec--CCCCCeeEEEEecCCCcEEEEeeCCCeEEEEeec
Q 001343 832 EAVPCIALSKNDSYVMSATGGKISLFNMMTFKV------MTTFM--SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (1096)
Q Consensus 832 ~~v~~l~~s~dg~~la~~~dg~v~iwd~~~~~~------~~~~~--~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~ 903 (1096)
..+..++|+|+|.+.|+ .+|.++-.+..+... -..+- +-. .-.++.|.| ++.+.++ .||.|.-++-.
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~-~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDP-NGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECT-TSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECC-CCCEEEe--CCCEEEEeCCC
Confidence 35779999999998888 778776666544211 01110 111 136889999 8877777 66888766653
Q ss_pred cceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEEEecceEEE
Q 001343 904 VDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAI 956 (1096)
Q Consensus 904 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~d~~i~i 956 (1096)
+...-.|..+. ..+-.-.- ..+..|.|.|+|.+.++. |+.+.-
T Consensus 116 ~~~~~~Wl~~a------~~vg~~gw---~~~~~lff~p~G~Lyav~-dg~lyr 158 (236)
T 1tl2_A 116 QSDTDNWIARA------TEVGSGGW---SGFKFLFFHPNGYLYAVH-GQQFYK 158 (236)
T ss_dssp CSTTCCHHHHS------EEEECSSG---GGEEEEEECTTSCEEEEE-TTEEEE
T ss_pred cCCCCceeccc------cEeccCCC---CceEEEEECCCceEEEEe-CCcEEe
Confidence 32211222111 01110000 257889999999998888 888543
No 344
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.98 E-value=7.4 Score=41.20 Aligned_cols=236 Identities=13% Similarity=0.070 Sum_probs=122.9
Q ss_pred cccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cCCceE--EEe----eCCCCCeEEEEeeec--CCCcEEEEEE--CCC
Q 001343 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL--FNF----EGHEAPVYSICPHHK--ENIQFIFSTA--IDG 518 (1096)
Q Consensus 450 h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~--~~~----~~~~~~v~~~~~~~~--~~~~~l~s~~--~dg 518 (1096)
.-...+.|+|.|||. ++++--..|.|++++ ..++.. ..+ .........|+++|+ .++.+.++-+ .++
T Consensus 30 gL~~P~~ia~~pdG~--llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~ 107 (347)
T 3das_A 30 GLNSPWGLAPLPGGD--LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDN 107 (347)
T ss_dssp CCSSEEEEEECTTSC--EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred CCCCceEEEEcCCCc--EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCC
Confidence 344678999999998 677665589999998 555432 111 123456789999874 2333333322 345
Q ss_pred eEEEEEcCCCC--------eeeE---Ee-CCCCcEEEEEEcCCCCEEEEEeecc---------CCCCeEEEEeCCCC---
Q 001343 519 KIKAWLYDTMG--------SRVD---YD-APGHWCTTMLYSADGSRLFSCGTSK---------DGDSFLVEWNESEG--- 574 (1096)
Q Consensus 519 ~i~iwd~~~~~--------~~~~---~~-~~~~~i~~l~~s~~~~~l~~~~~~~---------~~~~~i~iwd~~~~--- 574 (1096)
.|.-|.+.... .... +. ...+....|+|.|||.+.++.+... ...+.|.-.+....
T Consensus 108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~ 187 (347)
T 3das_A 108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAP 187 (347)
T ss_dssp EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCT
T ss_pred EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccC
Confidence 56666655411 1111 11 1233556799999998777765311 11345555554422
Q ss_pred -----eeeEEEcCcCccceEEEEEeCCCCEEEEE-EcCCeEEEEeCCCCeE------------------EEEeecCCCCC
Q 001343 575 -----TIKRTYAGFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNI------------------LTSTDAEGGLP 630 (1096)
Q Consensus 575 -----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~------------------~~~~~~~~~~~ 630 (1096)
....--.++.+ ...++|+|++..+++= +.++.=.|-.+..+.. +..+..+ ..
T Consensus 188 ~nPf~~~~i~a~G~RN--p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~--~~ 263 (347)
T 3das_A 188 GNPFPGSPVYSYGHRN--VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD--EA 263 (347)
T ss_dssp TCSSTTCCEEEBCCSB--CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT--TC
T ss_pred CCCCCCCeEEeeCCCC--cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC--CC
Confidence 11111224433 3458899987655442 2222222222222211 1111100 01
Q ss_pred CccEEEEeCCCCEEEEEECCCcEEEEEcCCCccc---cccccCCCcccccCcceeEEeecCCCeEEecCC
Q 001343 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRS---LRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (1096)
Q Consensus 631 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~g~~lv~~~s 697 (1096)
....++|. +|.++...-..+.|....+..+... ...+.+ ....+..+.+.|||.+.++...
T Consensus 264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~-----~~gR~~dv~~~pDG~lyv~td~ 327 (347)
T 3das_A 264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEG-----EYGRLRTVAPAGGDKLWLVTSN 327 (347)
T ss_dssp CEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTT-----TSSCEEEEEEEETTEEEEEECT
T ss_pred CCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecC-----CCCCccEEEECCCCcEEEEEcC
Confidence 33466665 4555555556666766666544211 011111 2346788999999988766543
No 345
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.80 E-value=1.8 Score=46.71 Aligned_cols=140 Identities=10% Similarity=0.011 Sum_probs=63.9
Q ss_pred CeEEEEEcCCCCeeeEEeCCC-CcE-EEEEEcCCCCEEEEEeeccCC--CCeEEEEeC--CCCeeeEE--EcCcCccceE
Q 001343 518 GKIKAWLYDTMGSRVDYDAPG-HWC-TTMLYSADGSRLFSCGTSKDG--DSFLVEWNE--SEGTIKRT--YAGFRKKSNG 589 (1096)
Q Consensus 518 g~i~iwd~~~~~~~~~~~~~~-~~i-~~l~~s~~~~~l~~~~~~~~~--~~~i~iwd~--~~~~~~~~--~~~~~~~~i~ 589 (1096)
..+.+||..+..-...-.... ... .+++. -+++.++.++.+..+ ...+..||+ .+.+-... +..... ...
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~-~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG-VAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC-CBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc-ccc
Confidence 468888887654433222221 111 22332 255566666542211 345777776 44433221 111111 111
Q ss_pred EEEEeCCCCEEEEEEcC----------------------CeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEEEE
Q 001343 590 VVQFDTTQNHFLAVGED----------------------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1096)
Q Consensus 590 ~~~~~~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 647 (1096)
..+...++..++.|+.+ ..+.+||+.+.+....-..... .....+..-++++++.|
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~~~i~v~G 323 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG--RAYGVSLPWNNSLLIIG 323 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC--CBSSEEEEETTEEEEEE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC--cccceeEEeCCEEEEEe
Confidence 11222355666666632 2578899987655443332222 22223334477888888
Q ss_pred ECCC------cEEEEEcCCC
Q 001343 648 TADN------GFKILANAIG 661 (1096)
Q Consensus 648 ~~dg------~i~iwd~~~~ 661 (1096)
+.++ .+.++++.++
T Consensus 324 G~~~~~~~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 324 GETAGGKAVTDSVLITVKDN 343 (357)
T ss_dssp EECGGGCEEEEEEEEEC-CC
T ss_pred eeCCCCCEeeeEEEEEEcCc
Confidence 8643 3555577665
No 346
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.72 E-value=1.1 Score=43.43 Aligned_cols=108 Identities=14% Similarity=0.031 Sum_probs=64.6
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCC--------EEEEEEcC
Q 001343 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS--------VSRVAWSP 416 (1096)
Q Consensus 345 ~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--------V~~l~~sp 416 (1096)
..+.+++|+|+|. |.|+ .+|.+.-.+..++.... ..+.... -.++.|.|
T Consensus 41 ~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~--------------------W~~s~t~IG~~Gw~~F~a~~fD~ 97 (236)
T 1tl2_A 41 SNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDN--------------------WMGRAKKIGNGGWNQFQFLFFDP 97 (236)
T ss_dssp TTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCC--------------------HHHHCEEEECSCGGGCSEEEECT
T ss_pred ccceeEEECCCcc-EEEE--eCCeEEEECCCCCCccc--------------------ccccccEecccccccceEEEECC
Confidence 4678999999998 6666 67765555543322110 0001112 47899999
Q ss_pred CCCEEEEEECCCeEEEEEccCCCccccc--e-ee-cccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE
Q 001343 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQH--S-QI-DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1096)
Q Consensus 417 d~~~l~s~~~dg~i~vwd~~~~~~~~~~--~-~l-~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd 481 (1096)
+|.+.++ .||.|.-++-.+...-.-+ . .+ .+-=..+..|.|.|+|. |.... |+.++-+.
T Consensus 98 ~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~---Lyav~-dg~lyr~~ 160 (236)
T 1tl2_A 98 NGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY---LYAVH-GQQFYKAL 160 (236)
T ss_dssp TSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC---EEEEE-TTEEEEEC
T ss_pred CCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce---EEEEe-CCcEEecC
Confidence 9999888 5698887775332211100 0 01 11124689999999997 45555 77765444
No 347
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.63 E-value=0.15 Score=54.04 Aligned_cols=189 Identities=10% Similarity=0.067 Sum_probs=103.4
Q ss_pred EEEEEeCCCcEEEEE-cCCceEEEeeCC-CCCeEEEEeeec-CCCcEEEEE-ECCCeEEEEEcCCCCeeeEEeCC----C
Q 001343 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGH-EAPVYSICPHHK-ENIQFIFST-AIDGKIKAWLYDTMGSRVDYDAP----G 538 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd-~~~~~~~~~~~~-~~~v~~~~~~~~-~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~----~ 538 (1096)
.++.++.||.|.-.| .+|+.+.+++.. ..++....-... .++..++.. +.||.|..++..++.....+... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 688899999999999 899999888754 123322211011 122333333 58999999998776444433221 1
Q ss_pred CcEEE---EEE-----cCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCcCccc------eEEEEEe-----CCCCE
Q 001343 539 HWCTT---MLY-----SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS------NGVVQFD-----TTQNH 599 (1096)
Q Consensus 539 ~~i~~---l~~-----s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~------i~~~~~~-----~~~~~ 599 (1096)
.++.. ..+ +..+..+++++. ++.++..|..+|+.+..+....... ..|.... ..+..
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 11211 000 014556777776 8999999999999999987542111 0011110 12356
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEEee-----cCCCCCCc-cEEEEeCCCCEEEEEECCCcEEEEEcCCCc
Q 001343 600 FLAVGEDSQIKFWDMDNVNILTSTD-----AEGGLPNL-PRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1096)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 662 (1096)
++.+..+..+.+.+ ++|+ +..+. .......+ ..-..+.|+.+ +.++.||.|.-+|..+|.
T Consensus 168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~ 233 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRI 233 (339)
T ss_dssp EEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCC
T ss_pred EEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCc
Confidence 77777777777766 3443 21111 10000000 00011224555 457889999999988774
No 348
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.88 E-value=5.1 Score=42.97 Aligned_cols=64 Identities=22% Similarity=0.335 Sum_probs=37.0
Q ss_pred CCCcEEEEec--CCeEEEEEccc--ceE--EEeecCCCCCeeEEEEecCCCcEEEEeeC-C---------CeEEEEeecc
Q 001343 841 KNDSYVMSAT--GGKISLFNMMT--FKV--MTTFMSPPPASTFLAFHPQDNNIIAIGTE-D---------STIHIYNVRV 904 (1096)
Q Consensus 841 ~dg~~la~~~--dg~v~iwd~~~--~~~--~~~~~~h~~~i~~l~~s~~d~~~l~s~~~-d---------g~i~iw~~~~ 904 (1096)
-++++++.|+ ...+.+||..+ .+. +..+......-.+++. - ++++++.|+. + ..+.+||..+
T Consensus 18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-I-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-E-TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-E-CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 3778888877 35699999863 332 2222211111112222 3 5778888876 2 3577888877
Q ss_pred ce
Q 001343 905 DE 906 (1096)
Q Consensus 905 ~~ 906 (1096)
.+
T Consensus 96 ~~ 97 (357)
T 2uvk_A 96 NS 97 (357)
T ss_dssp TE
T ss_pred Cc
Confidence 65
No 349
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.78 E-value=10 Score=39.31 Aligned_cols=181 Identities=12% Similarity=0.067 Sum_probs=98.5
Q ss_pred EEEEcCCCCcEEEEEeCC-------------CeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEc
Q 001343 349 SMDFHPSHQTLLLVGSSN-------------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1096)
Q Consensus 349 ~v~fsp~g~~llasg~~d-------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1096)
+--++++|.++..+...+ ..|+..++..++... +... . +..|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~~--~--~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDPD--P--CIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EECS--C--EEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eecC--C--ccEEE
Confidence 456789999766665543 356666666554321 1111 1 23678
Q ss_pred CCCCEEEEEE--C--CCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEe-CCCcEEEEEcCCceEEEe
Q 001343 416 PDGNYVGVAF--T--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWELSGRKLFNF 490 (1096)
Q Consensus 416 pd~~~l~s~~--~--dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s-~d~~i~iwd~~~~~~~~~ 490 (1096)
+++++|+-.. . +..|...++++.. .. .+..+.. ..|+++++ .|+-.+ ....|.+-+..|.....+
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~--~iy~t~~g~~~Iy~~~l~g~~~~~l 182 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDR--YFYYNNPKNGQLYRYDTASQSEALF 182 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETT--EEEEECTTTCCEEEEETTTTEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECC--EEEEEeCCCceEEEEECCCCCEEEE
Confidence 8999998776 2 3456666666433 22 2333332 45788888 444444 367788878666554444
Q ss_pred eCCCCCeEEEEeeecCCCcEEEEEECCC--eEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEE
Q 001343 491 EGHEAPVYSICPHHKENIQFIFSTAIDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1096)
Q Consensus 491 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~i 568 (1096)
.. +... ..+.| ++.+|+-....+ .|..-+++.... ..+. ...+ ..++|++.+|+.+... ....|..
T Consensus 183 ~~--~~~~-~~~~P--~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt--~~~~--~~~~~~g~~Iy~~~~~--~~~~i~~ 250 (302)
T 3s25_A 183 YD--CNCY-KPVVL--DDTNVYYMDVNRDNAIVHVNINNPNP-VVLT--EANI--EHYNVYGSLIFYQRGG--DNPALCV 250 (302)
T ss_dssp EC--SCEE-EEEEE--ETTEEEEEEGGGTTEEEEECSSSCCC-EECS--CSCE--EEEEEETTEEEEEECS--SSCEEEE
T ss_pred eC--CCcc-ceeee--cCCEEEEEEcCCCcEEEEEECCCCCe-EEEe--CCCc--ceEEECCCEEEEEECC--CCcEEEE
Confidence 32 2232 23445 345666555432 455555554332 2222 1223 3477889888866421 1356777
Q ss_pred EeCCCCe
Q 001343 569 WNESEGT 575 (1096)
Q Consensus 569 wd~~~~~ 575 (1096)
-++....
T Consensus 251 ~~~DG~~ 257 (302)
T 3s25_A 251 VKNDGTG 257 (302)
T ss_dssp EETTSCC
T ss_pred EECCCCc
Confidence 7765443
No 350
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=92.13 E-value=9.1 Score=42.55 Aligned_cols=107 Identities=14% Similarity=0.126 Sum_probs=59.4
Q ss_pred CCeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccccccccceeeecCCC-----CCCCCCceEEEecC---Cc
Q 001343 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRKSVTIHIPAG-----KTPTGDTRVQFNAD---QV 944 (1096)
Q Consensus 873 ~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~~~~~~~~~~-----~~~~~v~~v~fs~d---g~ 944 (1096)
...+.|+|.| +++++++-...+.|.+++..++... .+..+.. ........++|+|| +.
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~-------------~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g 92 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVK-------------TVFQVPEIVNDADGQNGLLGFAFHPDFKNNP 92 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEE-------------EEEECTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEe-------------EEecCCccccccCCCCceeEEEECCCcCcCC
Confidence 4567999999 8987666544456887765544310 1111110 01126778999995 44
Q ss_pred EEEE--Ee------------cceEEEEEcccc-------eecc-ccccCCCCCCCceEEEEeeCCcEEEEEec
Q 001343 945 RMLV--VH------------ETQLAIYDASKM-------ERIR-QWTPQDALSAPISCAVYSCNSQLVFATFC 995 (1096)
Q Consensus 945 ~l~~--~~------------d~~i~iwd~~~~-------~~~~-~~~~~~~~~~~i~~l~~s~dg~~la~~~~ 995 (1096)
.|.+ +. ...|.-|++..+ +.+. .+.... ......++|.|||.+.++.+.
T Consensus 93 ~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~--~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 93 YIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSK--DHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp EEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCS--SCCEEEEEECTTSCEEEEECC
T ss_pred EEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCC--CCCCCeEeECCCCeEEEEECC
Confidence 4444 32 235655655321 1121 122211 234688999999988776543
No 351
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.10 E-value=13 Score=44.18 Aligned_cols=196 Identities=11% Similarity=0.080 Sum_probs=103.9
Q ss_pred CCCcEEEEec-C----CeEEEEEcccceEEEee-c-------CCCCCeeEEEEecCCCcEEEEeeCCC------eEEEEe
Q 001343 841 KNDSYVMSAT-G----GKISLFNMMTFKVMTTF-M-------SPPPASTFLAFHPQDNNIIAIGTEDS------TIHIYN 901 (1096)
Q Consensus 841 ~dg~~la~~~-d----g~v~iwd~~~~~~~~~~-~-------~h~~~i~~l~~s~~d~~~l~s~~~dg------~i~iw~ 901 (1096)
.++++++.|+ + ..+.+||..+++....- . .....-..+.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5677777776 2 34889998776543322 1 1111222334433 577888887543 467788
Q ss_pred eccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-Eecc--eEEEEEcccceeccc-----cccCCC
Q 001343 902 VRVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHET--QLAIYDASKMERIRQ-----WTPQDA 973 (1096)
Q Consensus 902 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~--~i~iwd~~~~~~~~~-----~~~~~~ 973 (1096)
..+.+ |..- ..+.... .-.+++...+++.++. |.++ .+.+||..+..-... +...
T Consensus 475 ~~t~~---W~~~----------~~~p~~R--~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~-- 537 (695)
T 2zwa_A 475 MKTRE---WSMI----------KSLSHTR--FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQN-- 537 (695)
T ss_dssp TTTTE---EEEC----------CCCSBCC--BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGS--
T ss_pred CCCCc---EEEC----------CCCCCCc--ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCc--
Confidence 77765 3221 1111111 1122333247777777 4332 799999987653221 1111
Q ss_pred CCCCceEEEEeeC-CcEEEEEec--C-----CcEEEEecCCCce-----eEEEccccccCCCccCCCccccceEEEecCC
Q 001343 974 LSAPISCAVYSCN-SQLVFATFC--D-----GNIGVFDADTLRL-----RCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL 1040 (1096)
Q Consensus 974 ~~~~i~~l~~s~d-g~~la~~~~--d-----g~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~ 1040 (1096)
.....++.+..+ +++++.|+. + ..+.+||+.+.+. ...+.... +.+..+|+ ++.+ .
T Consensus 538 -r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p--~~~R~~~~------~~~~-~- 606 (695)
T 2zwa_A 538 -SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP--LFQRYGSQ------IKYI-T- 606 (695)
T ss_dssp -CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG--GGCCBSCE------EEEE-E-
T ss_pred -ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC--CCCcccce------EEEe-C-
Confidence 222234555555 777777876 2 3588999988772 11222100 11100121 1222 1
Q ss_pred CCceEEEEeeC--------CcEEEEccCCCCCccc
Q 001343 1041 EPNQFAIGLTD--------GSVKVMEPSESEGKWG 1067 (1096)
Q Consensus 1041 d~~~l~s~~~d--------g~i~vW~v~~~~~~~~ 1067 (1096)
++.+++.|+.+ ..|.+||+.+. +|.
T Consensus 607 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~--~W~ 639 (695)
T 2zwa_A 607 PRKLLIVGGTSPSGLFDRTNSIISLDPLSE--TLT 639 (695)
T ss_dssp TTEEEEECCBCSSCCCCTTTSEEEEETTTT--EEE
T ss_pred CCEEEEECCccCCCCCCCCCeEEEEECCCC--eEE
Confidence 37888888853 45899998774 565
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=89.00 E-value=22 Score=36.37 Aligned_cols=220 Identities=11% Similarity=0.096 Sum_probs=113.1
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCCCCEEEEEE
Q 001343 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1096)
Q Consensus 346 ~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~~ 425 (1096)
.|..++..... .++. . ||.|..|-......+.. +.. ....|..|+...+- .++. .
T Consensus 25 ~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~-------------p~~------~~~~i~~ia~G~~h-s~~l-~ 79 (282)
T 3qhy_B 25 GVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTM-------------PAA------TQSGVDAIAAGNYH-SLAL-K 79 (282)
T ss_dssp SCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSC-------------CGG------GGSCCCEEEECSSE-EEEE-E
T ss_pred CCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCC-------------Ccc------CCCCEEEEEeCCCE-EEEE-E
Confidence 56677665543 3444 4 89999998655332210 000 11246666654432 3333 4
Q ss_pred CCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCceEEEeeCCCCCeEEEEee
Q 001343 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPH 503 (1096)
Q Consensus 426 ~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~~~~~v~~~~~~ 503 (1096)
||.|..|-......+-.... -...|..++...+ ..+.-. ||.|+.|- ..++.-.. ......|..++..
T Consensus 80 -~G~v~~wG~n~~Gqlg~P~~---~~~~v~~ia~G~~----hs~al~-~G~v~~wG~n~~gqlg~~-~~~~~~i~~i~~G 149 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVPAE---ARSGVDAIAAGAW----ASYALK-DGKVIAWGDDSDGQTTVP-AEAQSGVTALDGG 149 (282)
T ss_dssp -TTEEEEEECCTTSTTCCCGG---GSSSEEEEEEETT----EEEEEE-TTEEEEEECCTTSTTSCC-GGGGSSEEEEEEC
T ss_pred -CCEEEEeeCCCCCCCCCCcc---cCCCeEEEECcCC----EEEEEe-CCeEEEecCCCCCcCCCC-ccCCCCeEEEEcc
Confidence 89999997664333221111 1346888877654 333344 99999997 33433111 1123457777642
Q ss_pred ecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc
Q 001343 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1096)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 583 (1096)
....++ -. ||.|..|-.......-........|..++...+...++ . ++.++.|-......+.. ...
T Consensus 150 ---~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~-p~~ 216 (282)
T 3qhy_B 150 ---VYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTV-PTE 216 (282)
T ss_dssp ---SSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTCC-CGG
T ss_pred ---cCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCCC-Ccc
Confidence 223333 34 79999997654333221111123577776654433332 3 88899997543211110 001
Q ss_pred CccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 584 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
....+..++.... +.++-. ||.|+.|-...
T Consensus 217 ~~~~v~~i~~G~~--h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 217 ALSGVSAIASGEW--YSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp GGSSCCEEEECSS--CEEEEE-TTEEEEESTTC
T ss_pred cCCCceEEEcCCC--EEEEEE-CCEEEEecCCC
Confidence 1113444554433 333333 89999997654
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=88.86 E-value=17 Score=37.16 Aligned_cols=220 Identities=14% Similarity=0.092 Sum_probs=110.2
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEccCCCccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE--cCCc
Q 001343 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGR 485 (1096)
Q Consensus 408 ~V~~l~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~ 485 (1096)
.|..|+.... ..++. . ||.|..|-......+... ......|..++...+- .++. . ||.|+.|- ..++
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p---~~~~~~i~~ia~G~~h---s~~l-~-~G~v~~wG~n~~Gq 93 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMP---AATQSGVDAIAAGNYH---SLAL-K-DGEVIAWGGNEDGQ 93 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCC---GGGGSCCCEEEECSSE---EEEE-E-TTEEEEEECCTTST
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCC---ccCCCCEEEEEeCCCE---EEEE-E-CCEEEEeeCCCCCC
Confidence 5666665433 22333 4 899999976653333211 1123356677664332 3333 4 89999998 3333
Q ss_pred eEEEeeCCCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeCCCCcEEEEEEcCCCCEEEEEeeccCCCCe
Q 001343 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1096)
Q Consensus 486 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~~~~~~~~ 565 (1096)
.-. -..-...|..++... ...+.-. ||.|..|-.......-........|..++...+...++ . ++.
T Consensus 94 lg~-P~~~~~~v~~ia~G~----~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l---~----~G~ 160 (282)
T 3qhy_B 94 TTV-PAEARSGVDAIAAGA----WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV---K----NGG 160 (282)
T ss_dssp TCC-CGGGSSSEEEEEEET----TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTE
T ss_pred CCC-CcccCCCeEEEECcC----CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE---E----CCE
Confidence 211 111134677776532 2344445 99999997654333211111223566666544332222 1 677
Q ss_pred EEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCCeEEEEeecCCCCCCccEEEEeCCCCEEE
Q 001343 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1096)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 645 (1096)
++.|-......+.. .......+..++... .+.++- .||.|+.|-......+..... ....|..++..... .++
T Consensus 161 v~~wG~n~~gqlg~-p~~~~~~v~~i~~G~--~hs~al-~~G~v~~wG~n~~gqlg~p~~--~~~~v~~i~~G~~h-~~a 233 (282)
T 3qhy_B 161 VIAWGDNYFGQTTV-PAEAQSGVDDVAGGI--FHSLAL-KDGKVIAWGDNRYKQTTVPTE--ALSGVSAIASGEWY-SLA 233 (282)
T ss_dssp EEEEECCTTSTTSC-CGGGGSSEEEEEECS--SEEEEE-ETTEEEEEECCTTSTTCCCGG--GGSSCCEEEECSSC-EEE
T ss_pred EEEecCCCCCCCCC-ceecCCCeEEEEecC--CEEEEE-ECCeEEEEECCCCCCCCCCcc--cCCCceEEEcCCCE-EEE
Confidence 88886543211111 111112455555443 333333 699999997654322111100 11256677654432 333
Q ss_pred EEECCCcEEEEEcCC
Q 001343 646 VTTADNGFKILANAI 660 (1096)
Q Consensus 646 ~~~~dg~i~iwd~~~ 660 (1096)
.. ||.+..|-...
T Consensus 234 l~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 234 LK--NGKVIAWGSSR 246 (282)
T ss_dssp EE--TTEEEEESTTC
T ss_pred EE--CCEEEEecCCC
Confidence 33 89999986543
No 354
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=88.36 E-value=21 Score=38.07 Aligned_cols=151 Identities=12% Similarity=0.204 Sum_probs=81.7
Q ss_pred eEEEEEcccc--eEEEeecCC------CCCeeEEEEe---cC---CCcEEEEee-CCCeEEEEeeccceeeeeeccc--c
Q 001343 853 KISLFNMMTF--KVMTTFMSP------PPASTFLAFH---PQ---DNNIIAIGT-EDSTIHIYNVRVDELCVWSIDT--W 915 (1096)
Q Consensus 853 ~v~iwd~~~~--~~~~~~~~h------~~~i~~l~~s---~~---d~~~l~s~~-~dg~i~iw~~~~~~~~~w~~~~--~ 915 (1096)
+|.+||+.+. +.++++.-+ .+....+++. |. ++.++..+. ..+.|.++|+.+++ .|.+.. .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~--swRv~~~~~ 201 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQD--SWNVTHPTF 201 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTE--EEEEECGGG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCc--EEEEccCCC
Confidence 4667888887 777765432 3456778777 21 133444333 46789999999987 332211 0
Q ss_pred ccccceeeecCCCCCC---CCCceEEEecC----CcEEEEEecceEEEEEcccceec-----ccc--ccCCCCCCCceEE
Q 001343 916 EKRKSVTIHIPAGKTP---TGDTRVQFNAD----QVRMLVVHETQLAIYDASKMERI-----RQW--TPQDALSAPISCA 981 (1096)
Q Consensus 916 ~~~~~~~~~~~~~~~~---~~v~~v~fs~d----g~~l~~~~d~~i~iwd~~~~~~~-----~~~--~~~~~~~~~i~~l 981 (1096)
... ....-...|... ..+..+++||+ ++.|....-..-++|.+.+..+. ..+ .+..+-...-..+
T Consensus 202 ~pd-~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~ 280 (381)
T 3q6k_A 202 KAE-RPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIAL 280 (381)
T ss_dssp SCC-SCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEE
T ss_pred ccc-cCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceE
Confidence 000 000111122111 37899999998 78887743333445555432111 111 1111001223345
Q ss_pred EEe-eCCcEEEEEecCCcEEEEecCC
Q 001343 982 VYS-CNSQLVFATFCDGNIGVFDADT 1006 (1096)
Q Consensus 982 ~~s-~dg~~la~~~~dg~i~vwd~~~ 1006 (1096)
++. .+|.++++--....|..|+..+
T Consensus 281 ~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 664 5777777777888899999876
No 355
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=85.73 E-value=63 Score=38.08 Aligned_cols=240 Identities=8% Similarity=0.061 Sum_probs=121.6
Q ss_pred EEEE-EcCCCCcEEEEEeCCC----eEEEEecCCCCeeecccceeecccccCccccccccc-cCCC------CEEEEEEc
Q 001343 348 ISMD-FHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPI------SVSRVAWS 415 (1096)
Q Consensus 348 ~~v~-fsp~g~~llasg~~dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~------~V~~l~~s 415 (1096)
..+. ++|++++++++-|..| .|+++|+.+++.+.. . +. .-+. ....++|-
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~-----------------~~~~~k~~~~~~~~~~~~~W~ 193 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-G-----------------FEPITNSGKLLEGKFTYPTWI 193 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-C-----------------SCCBCTTCCBCCEETCCEEEE
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-C-----------------cccccccccccccccceeeEE
Confidence 3444 8999996555544444 799999999987632 1 11 0000 11334776
Q ss_pred CCCCEEEEEE-----------CCCeEEEEEccCCCccccceeecccccCE-EEEEEecCCCcE---EEEEEeCC---CcE
Q 001343 416 PDGNYVGVAF-----------TKHLIQLYSYAGSNDLRQHSQIDAHVGAV-NDLAFAYPNKLL---CVVTCGDD---KLI 477 (1096)
Q Consensus 416 pd~~~l~s~~-----------~dg~i~vwd~~~~~~~~~~~~l~~h~~~v-~~l~~s~d~~~~---~l~s~s~d---~~i 477 (1096)
|+..+..+. ....|+.|.+-+...-... .+.+....+ .....+++++.. .+++.+.+ ..+
T Consensus 194 -d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 271 (711)
T 4hvt_A 194 -NKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKK-LFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDN 271 (711)
T ss_dssp -ETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEE-EEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEE
T ss_pred -CCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeE-EeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeE
Confidence 333333332 1246888887664322111 233333333 345556676641 35554423 345
Q ss_pred EEEEcC---CceEEEeeCCCCCeEEEEeeecCCCcEEEEE----------ECCCeEEEEEcCCCC-------eeeE-EeC
Q 001343 478 KVWELS---GRKLFNFEGHEAPVYSICPHHKENIQFIFST----------AIDGKIKAWLYDTMG-------SRVD-YDA 536 (1096)
Q Consensus 478 ~iwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------~~dg~i~iwd~~~~~-------~~~~-~~~ 536 (1096)
.+.|.. ++ +..+...... .+..+. ++.+++.. ...+.|...++.... .... +..
T Consensus 272 ~~~~~~~~~~~-~~~l~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (711)
T 4hvt_A 272 YILDTKYKNLK-LQKINMPSDA--TLQGSF--KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTP 346 (711)
T ss_dssp EEEECSSSSCE-EEECCSCTTC--EEEEEE--TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECC
T ss_pred EEEcCCCCCCc-ceEeecCCcc--eEeeeE--CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECC
Confidence 555633 33 2333222211 112222 33444422 246778889987631 2222 322
Q ss_pred -CCCcEEEEEEcCCCCEEEEEeeccCCCCeEEEEeCCCCe-eeEE-EcCcCccceEEEEEeCCCCEE-EEEE---cCCeE
Q 001343 537 -PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRT-YAGFRKKSNGVVQFDTTQNHF-LAVG---EDSQI 609 (1096)
Q Consensus 537 -~~~~i~~l~~s~~~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~-~~~~~~~~i~~~~~~~~~~~l-~~~~---~dg~i 609 (1096)
....+..+.+..+ ..+++... ++...+.++++.++. ..+. +.......+......+++..+ ++.+ .-+.+
T Consensus 347 ~~~~~l~~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~ 423 (711)
T 4hvt_A 347 TANEVFNFISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTI 423 (711)
T ss_dssp CTTEEEEEEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEE
T ss_pred CCCCeEEEEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEE
Confidence 2336778888876 34444433 234568888877665 2333 332222245555666666544 4433 34678
Q ss_pred EEEeCC
Q 001343 610 KFWDMD 615 (1096)
Q Consensus 610 ~iwd~~ 615 (1096)
+.+|+.
T Consensus 424 ~~~d~~ 429 (711)
T 4hvt_A 424 YLWVKT 429 (711)
T ss_dssp EEECTT
T ss_pred EEEeCC
Confidence 888876
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=85.42 E-value=49 Score=36.59 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=34.9
Q ss_pred CEEEEEEcCCCC-EEEEEECCCeEEEEEccCCCccccceeec---------ccccCEEEEEEecC
Q 001343 408 SVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQID---------AHVGAVNDLAFAYP 462 (1096)
Q Consensus 408 ~V~~l~~spd~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~l~---------~h~~~v~~l~~s~d 462 (1096)
.-..|+|.|||. .|+++...|.|++++.+.......+..+. ...+....|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 467899999996 45556788999999754321111111111 11457889999996
No 357
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=82.28 E-value=86 Score=36.93 Aligned_cols=243 Identities=9% Similarity=0.033 Sum_probs=119.2
Q ss_pred EEEEE-EcCCCCEEEEEEC----C-CeEEEEEccCCCccccceeec-cccc------CEEEEEEecCCCcEEEEEE----
Q 001343 409 VSRVA-WSPDGNYVGVAFT----K-HLIQLYSYAGSNDLRQHSQID-AHVG------AVNDLAFAYPNKLLCVVTC---- 471 (1096)
Q Consensus 409 V~~l~-~spd~~~l~s~~~----d-g~i~vwd~~~~~~~~~~~~l~-~h~~------~v~~l~~s~d~~~~~l~s~---- 471 (1096)
...+. ++||+++++.+-. | ..|+++|+.+++.+... +. .-+. ....++|..++. ++++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~--~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~ 206 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNG--FEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHK 206 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTC--SCCBCTTCCBCCEETCCEEEEETTE--EEECCCCST
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCC--cccccccccccccccceeeEECCCE--EEEEeCCCC
Confidence 33445 8899998876522 2 47999999998766431 21 1111 123457774443 44432
Q ss_pred ------eCCCcEEEEE-cCC--ceEEEeeCCCCCeE-EEEeeecCCCc---EEEEEECC---CeEEEEEcCCCC-eeeEE
Q 001343 472 ------GDDKLIKVWE-LSG--RKLFNFEGHEAPVY-SICPHHKENIQ---FIFSTAID---GKIKAWLYDTMG-SRVDY 534 (1096)
Q Consensus 472 ------s~d~~i~iwd-~~~--~~~~~~~~~~~~v~-~~~~~~~~~~~---~l~s~~~d---g~i~iwd~~~~~-~~~~~ 534 (1096)
+....|+.|. -+. +-...+.+....+. +.....++... .+++.+.+ ..+.+.+..... ....+
T Consensus 207 ~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 286 (711)
T 4hvt_A 207 NEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKI 286 (711)
T ss_dssp TCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEEC
T ss_pred CCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEe
Confidence 1124677776 221 22334444444432 22233332221 34444422 344555544322 22333
Q ss_pred eCCCCcEEEEEEcCCCCEEEEEeec------cCCCCeEEEEeCCCCe-------eeEE-EcCcCccceEEEEEeCCCCEE
Q 001343 535 DAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNESEGT-------IKRT-YAGFRKKSNGVVQFDTTQNHF 600 (1096)
Q Consensus 535 ~~~~~~i~~l~~s~~~~~l~~~~~~------~~~~~~i~iwd~~~~~-------~~~~-~~~~~~~~i~~~~~~~~~~~l 600 (1096)
...... .+..+.++.+++....+ .-..+.|...++.++. ..+. +.......+..+.+..+ ..+
T Consensus 287 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~ 363 (711)
T 4hvt_A 287 NMPSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVF 363 (711)
T ss_dssp CSCTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEE
T ss_pred ecCCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEE
Confidence 333221 12333455555533111 0126778888887642 1222 44444446677777765 566
Q ss_pred EEEEcCCe--EEEEeCCCCe-EEEE-eecCCCCCCccEEEEeCCCC-EEEEEEC---CCcEEEEEcC
Q 001343 601 LAVGEDSQ--IKFWDMDNVN-ILTS-TDAEGGLPNLPRLRFSKEGN-LLAVTTA---DNGFKILANA 659 (1096)
Q Consensus 601 ~~~~~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~~~~s~~~~-~l~~~~~---dg~i~iwd~~ 659 (1096)
++...++. ++++++.++. .... +.... ...+......+++. ++++.+. -+.+..+|+.
T Consensus 364 ~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 364 LATYDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 66666664 6777776664 2222 33322 12455555666654 4444443 2557777765
No 358
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=80.15 E-value=19 Score=42.70 Aligned_cols=113 Identities=9% Similarity=-0.061 Sum_probs=63.0
Q ss_pred CCCEEEEEeeccCC--CCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEEcCC--eEEEEeCCCCeEEEEee
Q 001343 549 DGSRLFSCGTSKDG--DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--QIKFWDMDNVNILTSTD 624 (1096)
Q Consensus 549 ~~~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~ 624 (1096)
+++.++.||..... -..+.+||..+.+....-.......-.+.+.-.++..++.||.++ .+.+||..+........
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~ 530 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP 530 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence 67777777653321 246888999886544332111111112233324778888887544 79999998876544322
Q ss_pred ---cCCCCCCccEEEEeCC-CCEEEEEEC--C-----CcEEEEEcCCC
Q 001343 625 ---AEGGLPNLPRLRFSKE-GNLLAVTTA--D-----NGFKILANAIG 661 (1096)
Q Consensus 625 ---~~~~~~~v~~~~~s~~-~~~l~~~~~--d-----g~i~iwd~~~~ 661 (1096)
..........+.+..+ +.+++.|+. + ..+.+||+.+.
T Consensus 531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 1111112233566655 667777765 2 34777787665
No 359
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.43 E-value=19 Score=44.42 Aligned_cols=82 Identities=15% Similarity=0.143 Sum_probs=49.7
Q ss_pred CCCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEccccccCCCccCCCccccceEEEecCCCCceEEEE---eeC
Q 001343 975 SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIG---LTD 1051 (1096)
Q Consensus 975 ~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~s~~l~~s~~d~~~l~s~---~~d 1051 (1096)
...+.+++..++..++++-+.|+++|||++.++++..........++. ..... ....|..+.++.+- ..+
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~----~~~~~---~~~~~~~~~~i~v~~s~~~~ 307 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPL----QSFPY---LTSDHTTNSFIALYYPDNSH 307 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCS----CCCCC---EEECSSSTTEEEEEECCSSS
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCcc----ccccc---cccCCCcccEEEEEEcCCCC
Confidence 345667777888999999999999999999999977664432222221 11111 22233233333322 246
Q ss_pred CcEEEEccCCCC
Q 001343 1052 GSVKVMEPSESE 1063 (1096)
Q Consensus 1052 g~i~vW~v~~~~ 1063 (1096)
|..++|.+..+.
T Consensus 308 g~F~~~~~~~~~ 319 (950)
T 4gq2_M 308 GSFSIYKLNANA 319 (950)
T ss_dssp CEEEEEEEEEC-
T ss_pred cEEEEEEEecCC
Confidence 788888875544
No 360
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=76.66 E-value=96 Score=34.19 Aligned_cols=109 Identities=12% Similarity=0.165 Sum_probs=58.7
Q ss_pred CCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeeeEEeC--------CCCcEEEEEEcCC---CCEEEEEeecc---
Q 001343 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--------PGHWCTTMLYSAD---GSRLFSCGTSK--- 560 (1096)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~i~~l~~s~~---~~~l~~~~~~~--- 560 (1096)
...+.|+|.| +|.++++-...+.|++++...+........ .......|+|+|+ +..|.++....
T Consensus 27 ~~P~~~a~~p--dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGP--DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECT--TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcC--CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 3456888866 666555543334788887554433222111 1235779999996 55665554310
Q ss_pred --CC----CCeEEEEeCCCC--e-----ee-EEEcCcCccceEEEEEeCCCCEEEEEEc
Q 001343 561 --DG----DSFLVEWNESEG--T-----IK-RTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (1096)
Q Consensus 561 --~~----~~~i~iwd~~~~--~-----~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 605 (1096)
+. ...|.-++...+ . .+ ..+..........+.|.|+|.++++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 00 235555554321 1 11 1222222224677999999987777553
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=75.93 E-value=74 Score=39.07 Aligned_cols=39 Identities=15% Similarity=0.366 Sum_probs=33.0
Q ss_pred CeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccc
Q 001343 874 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDT 914 (1096)
Q Consensus 874 ~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~ 914 (1096)
.+.+++..+ +..++++-+.|+++|+|++.+++ |+.+.+.
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~-~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQ-CVETIEL 275 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTE-EEEEEEC
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCC-eEeeecc
Confidence 466778888 78899999999999999999998 7766554
No 362
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=72.97 E-value=1.1e+02 Score=32.96 Aligned_cols=236 Identities=8% Similarity=-0.023 Sum_probs=109.3
Q ss_pred CCCEEEEEEcC--CCCEEEEEECCC----eEEEEEccCCCcccccee---ecc--------cccCEEEEEEecC--CCcE
Q 001343 406 PISVSRVAWSP--DGNYVGVAFTKH----LIQLYSYAGSNDLRQHSQ---IDA--------HVGAVNDLAFAYP--NKLL 466 (1096)
Q Consensus 406 ~~~V~~l~~sp--d~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~---l~~--------h~~~v~~l~~s~d--~~~~ 466 (1096)
...|.+|++.| ++...+ ++..| .|.. ..+.|+....... +.. +...|.++++.|. ..
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~-s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~-- 129 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFR-SDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG-- 129 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEE-ESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT--
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEE-eCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC--
Confidence 35699999998 454544 44444 3332 2233433332111 111 1135888999873 33
Q ss_pred EEEEEeCCCcEEEEEcCCceEEEeeC-------------------CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCC
Q 001343 467 CVVTCGDDKLIKVWELSGRKLFNFEG-------------------HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1096)
Q Consensus 467 ~l~s~s~d~~i~iwd~~~~~~~~~~~-------------------~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 527 (1096)
.+..++..+.|...+..|+.-..+.. ....+.+|.+.|...+ .++.+..++.|... ..
T Consensus 130 ~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~-~l~vg~~~ggl~~s--~D 206 (394)
T 3b7f_A 130 TWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPK-HLYIGMSSGGVFES--TD 206 (394)
T ss_dssp CEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTT-CEEEEEETBEEEEE--SS
T ss_pred EEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCC-EEEEEECCCCEEEE--CC
Confidence 45555556666555444433222211 1234778888664333 34455444444332 22
Q ss_pred CCeeeEEeCC--------------CCcEEEEEEcCC-CCEEEEEeeccCCCCeEEEEeCCCCeeeEEEcC-cCc---cce
Q 001343 528 MGSRVDYDAP--------------GHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG-FRK---KSN 588 (1096)
Q Consensus 528 ~~~~~~~~~~--------------~~~i~~l~~s~~-~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~---~~i 588 (1096)
.......... ...+.++.+.|+ ...++++. .+.|+..+-. ++.-..+.. ... ..+
T Consensus 207 gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~-----~~gl~~s~D~-G~tW~~~~~~l~~~~~~~~ 280 (394)
T 3b7f_A 207 AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN-----HCGIYRMDRR-EGVWKRIGDAMPREVGDIG 280 (394)
T ss_dssp TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE-----TTEEEEEETT-TTEEECGGGGSCTTTCSCE
T ss_pred CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc-----CCeEEEeCCC-CCcceECCCCCCCCCccce
Confidence 2222211110 124889999886 35565554 3445554422 222222211 111 234
Q ss_pred EEEEEeC-CCCEEEEEEc-----------CCeEEEEeCCC-CeEEEEeec-CCCC---C--CccEEEEeCC-CCEEEEEE
Q 001343 589 GVVQFDT-TQNHFLAVGE-----------DSQIKFWDMDN-VNILTSTDA-EGGL---P--NLPRLRFSKE-GNLLAVTT 648 (1096)
Q Consensus 589 ~~~~~~~-~~~~l~~~~~-----------dg~i~iwd~~~-~~~~~~~~~-~~~~---~--~v~~~~~s~~-~~~l~~~~ 648 (1096)
..+.++| +...++++.. ++...+|.... ++....+.. .... . ....++++|. ...|+.++
T Consensus 281 ~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~ 360 (394)
T 3b7f_A 281 FPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGT 360 (394)
T ss_dssp EEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEEC
T ss_pred EEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEe
Confidence 5677776 3344555532 23344555443 343333321 1100 0 1235788874 34566666
Q ss_pred CCCcEE
Q 001343 649 ADNGFK 654 (1096)
Q Consensus 649 ~dg~i~ 654 (1096)
.++.|.
T Consensus 361 ~~g~l~ 366 (394)
T 3b7f_A 361 TGGEIW 366 (394)
T ss_dssp TTSCEE
T ss_pred CCCeEE
Confidence 555543
No 363
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=67.69 E-value=1.2e+02 Score=31.33 Aligned_cols=235 Identities=10% Similarity=0.058 Sum_probs=114.0
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCcccc----c--eeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c------
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQ----H--SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L------ 482 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~----~--~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~------ 482 (1096)
|+..++++.+.+|.|+--.+..-+..+. . ..+.. .+.+..+....... .|+..+..|.++-.. .
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~--~ll~fT~~G~~~~~~~~elp~~~ 77 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHD--HILCFSSRGRVYSMKVYQLPEAT 77 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC--EEEEEETTSEEEEEEGGGSCCCC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCC--EEEEEECCCEEEEEEhhHCcCCC
Confidence 3556788899999998766543211110 0 01111 22333333333344 455566667655554 1
Q ss_pred ---CCceEE---EeeCCCCCeEEEEeee-cCCCcEEEEEECCCeEEEEEcCCCC-----eee--EEeCCCCcEEEEEEcC
Q 001343 483 ---SGRKLF---NFEGHEAPVYSICPHH-KENIQFIFSTAIDGKIKAWLYDTMG-----SRV--DYDAPGHWCTTMLYSA 548 (1096)
Q Consensus 483 ---~~~~~~---~~~~~~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~--~~~~~~~~i~~l~~s~ 548 (1096)
.|.++. .+. ....|.++.... ..++.+++..+.+|.++-..+.... ... .+... ..+..+....
T Consensus 78 ~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~ 155 (307)
T 1zi0_A 78 RGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTS 155 (307)
T ss_dssp SSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEEC
T ss_pred CCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeC
Confidence 111111 122 234566654322 1244679999999999988764211 111 22222 4555554444
Q ss_pred CCCEEEEEeeccCCCCeEEEEeCCCC-------eeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC----
Q 001343 549 DGSRLFSCGTSKDGDSFLVEWNESEG-------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV---- 617 (1096)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~iwd~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---- 617 (1096)
+...++..+. .|.+..++...- .-++.+.-..+..+..+....++..+++.+..|.++-.++...
T Consensus 156 ~~~~i~l~T~----~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~ 231 (307)
T 1zi0_A 156 GEDEVMLFSA----EGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKS 231 (307)
T ss_dssp TTCEEEEEET----TSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCC
T ss_pred CCCEEEEECC----CCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCC
Confidence 4455655554 777777765321 1111122222224444444445567888899999888876321
Q ss_pred ---eEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 618 ---NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 618 ---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
.-+..+......+.+..+....+...++..+.+|.+.-++..
T Consensus 232 Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~ 276 (307)
T 1zi0_A 232 RATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVS 276 (307)
T ss_dssp TTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGG
T ss_pred CCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecc
Confidence 111122221212244444333344455566666666555553
No 364
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=67.33 E-value=1.3e+02 Score=31.91 Aligned_cols=172 Identities=11% Similarity=0.136 Sum_probs=89.4
Q ss_pred eEEEEecCCC--CeeecccceeecccccCccccccccccCCCCEEEEEEc---CC----CCEEEEEE-CCCeEEEEEccC
Q 001343 368 EITLWELAMR--DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS---PD----GNYVGVAF-TKHLIQLYSYAG 437 (1096)
Q Consensus 368 ~I~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s---pd----~~~l~s~~-~dg~i~vwd~~~ 437 (1096)
+|.+||+.++ +.++...+ +..+.. ..+.+..+++. |+ +.++..+. ..+-|.|+|+.+
T Consensus 124 kLv~~DL~t~~~~li~~y~~------------p~~~~~-~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~ 190 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYF------------PTRLVE-KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKK 190 (381)
T ss_dssp EEEEEESSSTTCCEEEEEEC------------CGGGCC-CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTT
T ss_pred eEEEEECCCCCceeEEEEEC------------CHHhcc-cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCC
Confidence 6889999999 87765222 112222 34678888888 22 33444443 357899999998
Q ss_pred CCccccce-----------eeccc----ccCEEEEEEecC----CCcEEEEEEeCCC-cEEEEE---c-CC---ceEEEe
Q 001343 438 SNDLRQHS-----------QIDAH----VGAVNDLAFAYP----NKLLCVVTCGDDK-LIKVWE---L-SG---RKLFNF 490 (1096)
Q Consensus 438 ~~~~~~~~-----------~l~~h----~~~v~~l~~s~d----~~~~~l~s~s~d~-~i~iwd---~-~~---~~~~~~ 490 (1096)
++..+... .+.|. ...|..|+.+|+ ++. |.-+.-.+ .++--. . +. ..+..
T Consensus 191 ~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~--LYf~plss~~ly~V~T~~L~~~~~~~~v~~- 267 (381)
T 3q6k_A 191 QDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRP--AYYLAGSAIKVYSVNTKELKQKGGKLNPEL- 267 (381)
T ss_dssp TEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCE--EEEEESSCSEEEEEEHHHHSSTTCCCCCEE-
T ss_pred CcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeE--EEEEECCCCcEEEEEHHHhhCcchhhceEE-
Confidence 86554221 01111 246788888887 553 33222222 222221 1 11 11111
Q ss_pred eCCCC---CeEEEEeeecCCCcEEEEEECCCeEEEEEcCC-C----C-eeeEEeCCCCcEEEEEEcCCCCEEEEE
Q 001343 491 EGHEA---PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-M----G-SRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1096)
Q Consensus 491 ~~~~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~----~-~~~~~~~~~~~i~~l~~s~~~~~l~~~ 556 (1096)
.|..+ .-..+++. ..+|.++++--....|..|+..+ . . ........-..+..+.+..+|...+..
T Consensus 268 ~G~kg~~s~~~~~~~D-~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 268 LGNRGKYNDAIALAYD-PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEECCTTCCEEEEEEC-TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred eeecCCCCCcceEEEe-CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 12222 12223332 13566777777888999998875 1 1 111222222356777777666544443
No 365
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=61.37 E-value=2.1e+02 Score=32.05 Aligned_cols=179 Identities=15% Similarity=0.098 Sum_probs=93.8
Q ss_pred ccccCEEEEEEecCCCcEEEEEEeCCCc----------------------------EEEEE-cCCceEEEeeCC--CCC-
Q 001343 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKL----------------------------IKVWE-LSGRKLFNFEGH--EAP- 496 (1096)
Q Consensus 449 ~h~~~v~~l~~s~d~~~~~l~s~s~d~~----------------------------i~iwd-~~~~~~~~~~~~--~~~- 496 (1096)
.|-..+....|.-||+. -|+....+|+ +.++| .+|+.+.+..-. .+.
T Consensus 176 a~yt~~~V~DlDGDGka-EIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~ 254 (591)
T 2zux_A 176 AHYTQFMVYDLDGDGKA-EVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNV 254 (591)
T ss_dssp TTSCCCEEECSSSSSSC-EEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCG
T ss_pred cccCceeEEEcCCCCcc-eEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcc
Confidence 36667888888888886 5666766665 78999 899888775421 111
Q ss_pred --------------eEEEEeeecCCCcEEEEEE---CCCeEEEEEcCCCCeee--EEeCCC-----------CcEEEEEE
Q 001343 497 --------------VYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGSRV--DYDAPG-----------HWCTTMLY 546 (1096)
Q Consensus 497 --------------v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~--~~~~~~-----------~~i~~l~~ 546 (1096)
..+++.. +++...++.+- ....+..||++..+... .+.... +.+.-..+
T Consensus 255 ~~WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDV 333 (591)
T 2zux_A 255 SDWGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADV 333 (591)
T ss_dssp GGGTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECC
T ss_pred cccccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeC
Confidence 1233321 11122333332 12347778876664432 332211 23333444
Q ss_pred cCCCC-EEEEEeeccCCCCeEEEEeCCCCeeeEEEc-CcCccceEEEEEeCCC--CEEEEEEcCC----eEEEEeCCCCe
Q 001343 547 SADGS-RLFSCGTSKDGDSFLVEWNESEGTIKRTYA-GFRKKSNGVVQFDTTQ--NHFLAVGEDS----QIKFWDMDNVN 618 (1096)
Q Consensus 547 s~~~~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~--~~l~~~~~dg----~i~iwd~~~~~ 618 (1096)
.-||+ .|+.++.- +| .+|+.+.... +|.+ .+....|.|+. -.++.+.+++ -..+.|..+|+
T Consensus 334 DgDG~dEIv~Gs~~---------iD-~dG~~L~st~~gHGD-a~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~ 402 (591)
T 2zux_A 334 DGDGKDEIIFGSMA---------VD-HDGKGMYSTGLGHGD-ALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGK 402 (591)
T ss_dssp SSSSSCEEEETTEE---------EC-TTSCEEEECSCCCCS-CEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCC
T ss_pred CCCCCceEEEeeeE---------EC-CCCCEeeeCCCCCCC-eeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCc
Confidence 44544 23333221 12 2233333322 4544 66667777763 4566665541 35568889999
Q ss_pred EEEEeecCCCCCCccEEEEeCC
Q 001343 619 ILTSTDAEGGLPNLPRLRFSKE 640 (1096)
Q Consensus 619 ~~~~~~~~~~~~~v~~~~~s~~ 640 (1096)
.+.......+.+......|.|+
T Consensus 403 vlw~~~~~~d~Gr~~~~Didp~ 424 (591)
T 2zux_A 403 ILWGVYAGKDVGRGMAADIDPR 424 (591)
T ss_dssp EEEEECCSSCCCCEEEECCCTT
T ss_pred EEEEcCCCCCCCceeEEecCCC
Confidence 9887765433333333344443
No 366
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=60.76 E-value=8.8 Score=30.16 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcChHHHHHHHHHhhCCC
Q 001343 7 ELVFLILQFLEEEKFKESVHKLEKESGFF 35 (1096)
Q Consensus 7 e~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1096)
-+.-||..||.=.||+-|..+|+-|+|..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 46789999999999999999999999986
No 367
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=59.33 E-value=1.9e+02 Score=30.89 Aligned_cols=216 Identities=9% Similarity=-0.002 Sum_probs=99.8
Q ss_pred CCEEEEEECCCeEEEEEccC-CCccccceeecccccCEEEEEEec--CCCcEEEEEEeCCC----cEEEEEcCCceEEEe
Q 001343 418 GNYVGVAFTKHLIQLYSYAG-SNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDK----LIKVWELSGRKLFNF 490 (1096)
Q Consensus 418 ~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~l~~h~~~v~~l~~s~--d~~~~~l~s~s~d~----~i~iwd~~~~~~~~~ 490 (1096)
...|.+|+..| +.+++... ++....... ......|.+|++.| ++. |..++..+ .|...+..|+.-..+
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~-~~~~~~v~~i~~dp~~~~~---l~~g~~~g~~g~gl~~s~D~G~tW~~~ 96 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGP-VFLGHTIHHIVQDPREPER---MLMAARTGHLGPTVFRSDDGGGNWTEA 96 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEE-ESTTSEEEEEEECSSSTTC---EEEEEEC--CCEEEEEESSTTSCCEEC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCc-cCCCCceEEEEECCCCCCe---EEEEecCCCCCccEEEeCCCCCCceEC
Confidence 34666777776 55555432 333322111 11235699999998 443 44444444 444443334322222
Q ss_pred eC--------------CCCCeEEEEeeecCCCcEEEEEECCCeEEEEEcCCCCeee-EEe-------------------C
Q 001343 491 EG--------------HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYD-------------------A 536 (1096)
Q Consensus 491 ~~--------------~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~-------------------~ 536 (1096)
.. ....|.++++.+......++.++..+.|... ....... .+. .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S--~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~ 174 (394)
T 3b7f_A 97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRS--TDHGASWEPVAGFNDHPMRRAWTGGEQDGTP 174 (394)
T ss_dssp SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEE--SSTTSBCEECHHHHTCTTHHHHHCCC----C
T ss_pred CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEE--cCCCCCeEECcCccCCccccccccccccCCC
Confidence 11 1124677887653202345666555654433 3222222 111 1
Q ss_pred CCCcEEEEEEcCC-CCEEEEEeeccCCCCeEEEEeCCCCeeeEEEc-CcC-----------ccceEEEEEeCC-CCEEEE
Q 001343 537 PGHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA-GFR-----------KKSNGVVQFDTT-QNHFLA 602 (1096)
Q Consensus 537 ~~~~i~~l~~s~~-~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~-----------~~~i~~~~~~~~-~~~l~~ 602 (1096)
....+.+|.+.|. ...++++.. .+.|+..+-. ++.-..+. +.. ...+..+.++|. ...+++
T Consensus 175 ~~~~i~~i~~d~~~~~~l~vg~~----~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~v 249 (394)
T 3b7f_A 175 DGPKMHSILVDPRDPKHLYIGMS----SGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQ 249 (394)
T ss_dssp CCCEEEEEEECTTCTTCEEEEEE----TBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEE
T ss_pred CCCceeEEEECCCCCCEEEEEEC----CCCEEEECCC-CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEE
Confidence 1235789999873 344555543 4445444322 22111111 100 124777888885 366777
Q ss_pred EEcCCeEEEEeCCCCeEEEEeecCCCC---CCccEEEEeC-CCCEEEEE
Q 001343 603 VGEDSQIKFWDMDNVNILTSTDAEGGL---PNLPRLRFSK-EGNLLAVT 647 (1096)
Q Consensus 603 ~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~s~-~~~~l~~~ 647 (1096)
+... .|+..+ +.++....+...-.. ..+..++++| +...+.++
T Consensus 250 g~~~-gl~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 250 QNHC-GIYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp EETT-EEEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred EcCC-eEEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 6654 454444 234433333211111 1345677776 33444444
No 368
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=56.58 E-value=18 Score=45.88 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=31.3
Q ss_pred CCceEEEEeeCCcEEEEEecCCcEEEEecCCCceeEEEc
Q 001343 976 APISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1014 (1096)
Q Consensus 976 ~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~ 1014 (1096)
..+.+++..++..++++-+.|+++|||++.++++.....
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 345556667888999999999999999999998766644
No 369
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=54.60 E-value=3.4e+02 Score=32.37 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=74.7
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccccCCCCEEEEEEcCC-CCEEE
Q 001343 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVG 422 (1096)
Q Consensus 344 ~~~V~~v~fsp~g~~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~~l~ 422 (1096)
...|.+|+++|.....+.+++..+.|...+ ..|+.-.. ... ..... .-....|.+|+++|. ...+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~--------~~~--~~~~~--~~~~~~i~~ia~dp~~~~~i~ 80 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIP--------LND--FIEAQ--DMNIMGTESIALDPNNPDRLY 80 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEE--------SCT--TCCGG--GGGGCSEEEEEEETTEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeE--------Ccc--CCCcc--cccCCceeEEEECCCCCCEEE
Confidence 458999999997544566676777665444 23332211 000 00000 001246999999984 34444
Q ss_pred EEECCCe----EEEE-EccCCCcccccee-ec--c---cccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEee
Q 001343 423 VAFTKHL----IQLY-SYAGSNDLRQHSQ-ID--A---HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE 491 (1096)
Q Consensus 423 s~~~dg~----i~vw-d~~~~~~~~~~~~-l~--~---h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 491 (1096)
++..... -.|| ..+.|+....... +. + ....+..+++.|.... .+..+...+.|..=+..|+.-..+.
T Consensus 81 ~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~-~v~~g~~~~gl~~S~DgG~TW~~~~ 159 (789)
T 1sqj_A 81 LAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSN-EVWMGTRTEGIWKSSDRAKTWTNVT 159 (789)
T ss_dssp EEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEE-EEEEECSSSCEEEESSTTSSCEEET
T ss_pred EEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCC-EEEEEeccCCEEEECCCCcccCCCc
Confidence 4432211 2333 3344443332110 00 0 0113567888876543 4555654444322113333222222
Q ss_pred C------CCCCeEEEEeeecCCCcEEEEEECC
Q 001343 492 G------HEAPVYSICPHHKENIQFIFSTAID 517 (1096)
Q Consensus 492 ~------~~~~v~~~~~~~~~~~~~l~s~~~d 517 (1096)
. ....+..+.++|... ..++.+..+
T Consensus 160 ~~~~~~~~~~~~~~i~~~p~~~-~~~~~~~~~ 190 (789)
T 1sqj_A 160 SIPDAFTNGIGYTSVIFDPERN-GTIYASATA 190 (789)
T ss_dssp TSCCCCSTTTCEEEEEECTTST-TCEEEEESS
T ss_pred cCccccCCCCCeEEEEECCCCC-CEEEEEEcC
Confidence 1 124577888877543 355555554
No 370
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=54.53 E-value=2.2e+02 Score=30.17 Aligned_cols=148 Identities=11% Similarity=0.169 Sum_probs=79.8
Q ss_pred cCCCCEEEEEECCCeEEEEEccCC-------CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c----
Q 001343 415 SPDGNYVGVAFTKHLIQLYSYAGS-------NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L---- 482 (1096)
Q Consensus 415 spd~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~---- 482 (1096)
-|+..++++.+.+|.|+--.+..- +..... .+. ....+..+....... .|+..+..|.++-+. .
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~-~lk-e~D~l~~~~~~~t~d--~ll~fT~~G~~~~~~~~eip~ 79 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAA-STK-EEDFIDQLWLVNTHD--TLLTFTSSGKVFWLPVHQLPE 79 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEE-ECS-CCCCEEEEEEECTTC--EEEEEETTSEEEEEEGGGSCB
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceec-ccC-CCCEEEEEEEecCCC--EEEEEeCCCeEEEEEHHHCcC
Confidence 467789999999999997654321 111111 122 244555555555555 566666677766554 1
Q ss_pred -----CCceEEE---eeCCCCCeEEEEeeec-CCCcEEEEEECCCeEEEEEcCCCC-----eee--EEeCCCCcEEEEEE
Q 001343 483 -----SGRKLFN---FEGHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMG-----SRV--DYDAPGHWCTTMLY 546 (1096)
Q Consensus 483 -----~~~~~~~---~~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~-----~~~--~~~~~~~~i~~l~~ 546 (1096)
.|..+.. +. ....|.++..... .++.+|+.++..|.++...+.... ... .+.. +..+..+..
T Consensus 80 ~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~ 157 (370)
T 3l6v_A 80 AGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVAL 157 (370)
T ss_dssp CCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEE
T ss_pred CCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEE
Confidence 1222111 22 2345666544321 234689999999999988764322 111 2222 334444444
Q ss_pred cCCCCEEEEEeeccCCCCeEEEEeCC
Q 001343 547 SADGSRLFSCGTSKDGDSFLVEWNES 572 (1096)
Q Consensus 547 s~~~~~l~~~~~~~~~~~~i~iwd~~ 572 (1096)
......++..+. .|.+..++..
T Consensus 158 ~~~~~~i~l~T~----~G~~irf~~~ 179 (370)
T 3l6v_A 158 TDGDRDVLLFAS----NGKTVRFGES 179 (370)
T ss_dssp ECSCCEEEEEET----TSEEEEEEGG
T ss_pred eCCCceEEEEeC----CCeEEEEEcc
Confidence 444455655554 6666666543
No 371
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=52.66 E-value=2.9e+02 Score=30.97 Aligned_cols=312 Identities=11% Similarity=0.073 Sum_probs=150.4
Q ss_pred eecCCCceeeecCCCCcceEEeecCCCceEEEEEcCCCCcEEEEEeCCCe----------------------------EE
Q 001343 319 TYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGE----------------------------IT 370 (1096)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~h~~~V~~v~fsp~g~~llasg~~dg~----------------------------I~ 370 (1096)
+|...+..+|..+..+. ++.-.|-..+....|.-||+.=+++.+.+|+ +.
T Consensus 155 aY~ldG~~LW~idlg~n--i~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~ 232 (591)
T 2zux_A 155 AYKLDGTKLWRINLGKN--IRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLT 232 (591)
T ss_dssp EECTTSCEEEEEECCTT--SCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEE
T ss_pred EEECCCCEEEEEcCCCC--cccccccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEE
Confidence 45555555776654331 1111266788999999999866777777776 77
Q ss_pred EEecCCCCeeecccceeecccccCccccc-cccccCCC--CEEEEEEcC-CCCEEEEEE---CCCeEEEEEccCCCcccc
Q 001343 371 LWELAMRDRLVSKPFKIWDMAACSLPFQA-SIFKDVPI--SVSRVAWSP-DGNYVGVAF---TKHLIQLYSYAGSNDLRQ 443 (1096)
Q Consensus 371 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~--~V~~l~~sp-d~~~l~s~~---~dg~i~vwd~~~~~~~~~ 443 (1096)
|+|-.+|+.+....+. ........ ---.++.. -..++++-- +.-.++.+- ....|..||..+++....
T Consensus 233 vfdG~TG~~l~~~~~~-----p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~ 307 (591)
T 2zux_A 233 VFQGSTGKELVTANFE-----PARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKL 307 (591)
T ss_dssp EEETTTCCEEEEEECS-----SCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEE
T ss_pred EEeCCCCCEEecccCC-----CCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEE
Confidence 8887788776542110 00000000 00000000 012222211 111222221 112356666655432110
Q ss_pred cee----------eccc-ccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEe-eCCCCCeEEEEeeecCCCcEE
Q 001343 444 HSQ----------IDAH-VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF-EGHEAPVYSICPHHKENIQFI 511 (1096)
Q Consensus 444 ~~~----------l~~h-~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l 511 (1096)
.. +.+. .....-..+.-||+. -|+.|+ .++|.+|+.+... .+|...+....|.|+..|..+
T Consensus 308 -W~~d~~~~~~~~~~gqg~h~~~vaDVDgDG~d-EIv~Gs-----~~iD~dG~~L~st~~gHGDa~hv~dldP~r~GlEv 380 (591)
T 2zux_A 308 -WTLDSSKSGNEAFAGQGNHNLSIADVDGDGKD-EIIFGS-----MAVDHDGKGMYSTGLGHGDALHTGDLDPGRPGLEV 380 (591)
T ss_dssp -EEEETTSTTCGGGSSCCCSCCEEECCSSSSSC-EEEETT-----EEECTTSCEEEECSCCCCSCEEEECCCTTSSSCEE
T ss_pred -EEecCCCCCcccccccCCCCCeeEeCCCCCCc-eEEEee-----eEECCCCCEeeeCCCCCCCeeEEeecCCCCCCcEE
Confidence 01 1110 123444455567765 455554 2566777777665 378888877788887667778
Q ss_pred EEEECCC----eEEEEEcCCCCeeeEEeCC--CCcEEEEEEcCCCC--EEEEEeeccCCCCeEEEEeCCCCeeeEEEcCc
Q 001343 512 FSTAIDG----KIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGS--RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1096)
Q Consensus 512 ~s~~~dg----~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~--~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 583 (1096)
+.+.+++ -..+.|..+++.+...... .+......|.|+.. .+.+ .. .+++.. |+.+.... .
T Consensus 381 ~~~~E~~~~~~G~~~~dA~tG~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~-------~~--~l~~~~-G~~i~~~~-p 449 (591)
T 2zux_A 381 FQVHEDKNAKYGLSFRDAATGKILWGVYAGKDVGRGMAADIDPRYPGQEVWA-------NG--SLYSAK-GVKIGSGV-P 449 (591)
T ss_dssp EEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCCEEEECCCTTSSSCEEEE-------TT--EEECTT-SCBCSSCC-C
T ss_pred EEEecCCCCCCccEEEECCCCcEEEEcCCCCCCCceeEEecCCCCCceEEEe-------cC--ceECCC-CCEecCCC-C
Confidence 8877652 2445788888887766543 22333334444422 2222 01 244433 33332210 0
Q ss_pred CccceEEEEEeCCC-CEEEEEEcCCeEEEEeCCCCeEEEEeecCC-----CCCCccEEEE--eCCC-CEEEEE-ECCCcE
Q 001343 584 RKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEG-----GLPNLPRLRF--SKEG-NLLAVT-TADNGF 653 (1096)
Q Consensus 584 ~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~--s~~~-~~l~~~-~~dg~i 653 (1096)
......+-|..+. +.++- .+.|.-|+...+.....+.... ....-.++.. .-|. .-++.. .++..+
T Consensus 450 -~~~N~~i~WdGDl~relld---~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~L 525 (591)
T 2zux_A 450 -SSTNFGIWWDGDLLREQLD---SNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSAL 525 (591)
T ss_dssp -SCCSEEECCSSSSSCEEEE---TTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEE
T ss_pred -CCcceeEEECCCCcHhhhC---CceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeE
Confidence 1122346666665 33333 2478889987776444443321 0011223333 2232 234434 445569
Q ss_pred EEEEcC
Q 001343 654 KILANA 659 (1096)
Q Consensus 654 ~iwd~~ 659 (1096)
+||...
T Consensus 526 rIYtt~ 531 (591)
T 2zux_A 526 RIYTTT 531 (591)
T ss_dssp EEECCC
T ss_pred EEEeCC
Confidence 999753
No 372
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=47.82 E-value=41 Score=39.01 Aligned_cols=32 Identities=6% Similarity=0.071 Sum_probs=27.1
Q ss_pred eeCCcEEEEEecCCcEEEEecCCCceeEEEcc
Q 001343 984 SCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1015 (1096)
Q Consensus 984 s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~ 1015 (1096)
..+..++++-+.|+++|+|++.++++......
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 35688999999999999999999997766543
No 373
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=46.34 E-value=2.7e+02 Score=28.84 Aligned_cols=232 Identities=8% Similarity=0.003 Sum_probs=119.2
Q ss_pred CEEEEEECCCeEEEEEccCC-------CccccceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE----cC----
Q 001343 419 NYVGVAFTKHLIQLYSYAGS-------NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE----LS---- 483 (1096)
Q Consensus 419 ~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd----~~---- 483 (1096)
..+++.+.+|.|+--.+.+- +-.... .+. ..+.+..+....... .|+.-+..|.++-.. ..
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~-~~k-e~D~~~~~~~~~t~d--~ll~fT~~Gr~y~~~~~~lp~~~r~ 79 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGA-GLK-QDDIVAHFFVCSTHD--LILFFTTQGRVYRAKAYDLPEASRT 79 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------C-CCC-GGGCEEEEEEEETTS--EEEEEETTSEEEEEEGGGSCBCCSS
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCcccc-ccC-CCCEEEEEEEeCCCC--EEEEEeCCCeEEEEEHHHCcCCCcc
Confidence 46677888888886654321 111100 111 234455555444444 455556677665544 11
Q ss_pred --CceEEEee--CCCCCeEEEEeeec-CCCcEEEEEECCCeEEEEEcCCCCe-----ee--EEeCCCCcEEEEEEcCCCC
Q 001343 484 --GRKLFNFE--GHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMGS-----RV--DYDAPGHWCTTMLYSADGS 551 (1096)
Q Consensus 484 --~~~~~~~~--~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~-----~~--~~~~~~~~i~~l~~s~~~~ 551 (1096)
|.++..+- .....|.++..... .+..+++..+.+|.++--.+..... .. .+. .+..+..+.......
T Consensus 80 ~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lk-e~D~lv~~~~~~~~d 158 (327)
T 3uc1_A 80 ARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLR-DNDELVGAVLCSAGD 158 (327)
T ss_dssp SCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCC-TTCCEEEEEEECTTC
T ss_pred CCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEEC-CCCEEEEEEEecCCC
Confidence 22211111 12345665544322 2457999999999999887654221 11 222 234555555555556
Q ss_pred EEEEEeeccCCCCeEEEEeCC--CCee-------eEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCCC-----
Q 001343 552 RLFSCGTSKDGDSFLVEWNES--EGTI-------KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----- 617 (1096)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~--~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----- 617 (1096)
.++..+. .|.+..+... .-.. ++.+.-..+..+..+...+.+..++..+..|.++.-.+...
T Consensus 159 ~ill~T~----~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R 234 (327)
T 3uc1_A 159 DLLLVSA----NGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGR 234 (327)
T ss_dssp EEEEEET----TSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred EEEEEEC----CCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCc
Confidence 6666665 7888777665 2110 11111122234554544455678999999999888875432
Q ss_pred --eEEEEeecCCCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 618 --NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 618 --~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
.-+..+........+..+....+...++..+.+|.+.-++..
T Consensus 235 ~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 235 GGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp TSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred CCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 122222222211234444444444566666777776666653
No 374
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=44.65 E-value=29 Score=39.63 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=43.0
Q ss_pred CCceEEEecCCcEEEE--Ee-----------cceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEEE
Q 001343 933 GDTRVQFNADQVRMLV--VH-----------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFAT 993 (1096)
Q Consensus 933 ~v~~v~fs~dg~~l~~--~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 993 (1096)
..-.|+|+|+|.+++. +. ...+.+.+..+++..+.+.... ..+++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~--gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC--CccCcCeeECCCCCEEEEE
Confidence 4456899999996666 21 1246677777787655554443 7899999999999998865
No 375
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=43.60 E-value=70 Score=32.95 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=20.3
Q ss_pred HHHHHHHHhccCHHHHHHHHcCC
Q 001343 38 MKYFEEKVQAGDWDEVEKYLSGF 60 (1096)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~l 60 (1096)
..+|++.|.+|+|-+|...++.+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl 39 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTI 39 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHH
Confidence 57899999999999999988776
No 376
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=43.44 E-value=1.2e+02 Score=38.19 Aligned_cols=39 Identities=15% Similarity=0.366 Sum_probs=32.0
Q ss_pred CeeEEEEecCCCcEEEEeeCCCeEEEEeeccceeeeeeccc
Q 001343 874 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDELCVWSIDT 914 (1096)
Q Consensus 874 ~i~~l~~s~~d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~ 914 (1096)
.+.+++..+ +..++++-+.|+++|||++.++. |+.+.+.
T Consensus 239 ~~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~-~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQ-CVETIEL 277 (1139)
T ss_dssp CBSCCEEET-TTTEEEEEBTTCEEEEEETTTTE-EEEEEEC
T ss_pred eeEEeeccC-CccEEEEEeCCCEEEEEECCCCC-eEEeech
Confidence 345667777 78899999999999999999998 7766554
No 377
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=43.04 E-value=1.6e+02 Score=29.80 Aligned_cols=86 Identities=13% Similarity=0.038 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHcC-hHHHHHHHHH--hhCCCcc---HHHH--HHHHhccCHHHHHHHHcCCCCCCCcccchhhHHHH
Q 001343 5 SRELVFLILQFLEEEK-FKESVHKLEK--ESGFFFN---MKYF--EEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEI 76 (1096)
Q Consensus 5 ~~e~~~li~q~L~~~g-~~~s~~~L~~--Esg~~~~---~~~~--~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l 76 (1096)
.-+.++++.+++...| +.++.+.|++ +.+..++ .... .-....|++++|+..+.+ +.+. . +.+ .
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~--~-~~~-~ 135 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSL--E-CMA-M 135 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSH--H-HHH-H
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCH--H-HHH-H
Confidence 3456777888888887 7778888876 3343333 1111 334567999999999988 2221 1 222 2
Q ss_pred HHHHHHHhhccCCHHHHHHHHHhhc
Q 001343 77 RKQKYLEALDRQDKAKAVDILVNDL 101 (1096)
Q Consensus 77 ~~~~~lell~~~~~~~A~~~l~~~l 101 (1096)
.-+. ++..|+.++|+..+++-+
T Consensus 136 l~~~---~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 136 TVQI---LLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHH---HHHTTCHHHHHHHHHHHH
T ss_pred HHHH---HHHCCCHHHHHHHHHHHH
Confidence 2222 345788999998888743
No 378
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=41.88 E-value=24 Score=30.90 Aligned_cols=48 Identities=19% Similarity=0.330 Sum_probs=32.5
Q ss_pred CcchHHHHHHHHHHHHHcChH-HHHHHHHHhhCCCccHHHHHHHHhccCHHHHHHHHcCC
Q 001343 2 SSLSRELVFLILQFLEEEKFK-ESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60 (1096)
Q Consensus 2 ~~~~~e~~~li~q~L~~~g~~-~s~~~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~l 60 (1096)
+....++...|+..|.+.||- .+...+.++.|+..+ +++.|+..++.|
T Consensus 18 ~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~-----------eve~vL~~iQ~~ 66 (130)
T 2k9m_A 18 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE-----------ELEKVRQKVLRL 66 (130)
T ss_dssp CSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHH-----------HHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH-----------HHHHHHHHHhcC
Confidence 345677889999999999995 455666666664433 235566667666
No 379
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=41.72 E-value=2e+02 Score=33.49 Aligned_cols=30 Identities=10% Similarity=0.227 Sum_probs=25.5
Q ss_pred CCcEEEEeeCCCeEEEEeeccceeeeeeccc
Q 001343 884 DNNIIAIGTEDSTIHIYNVRVDELCVWSIDT 914 (1096)
Q Consensus 884 d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~ 914 (1096)
+..++++-+.|.++|+|++.++. |+-..+.
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~-lv~t~DL 259 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFT-LIQDYDM 259 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTE-EEEEEET
T ss_pred CCcEEEEEEcCCeEEEEEcCCCc-eEEeecc
Confidence 56799999999999999999998 6655555
No 380
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=34.60 E-value=2e+02 Score=23.90 Aligned_cols=90 Identities=8% Similarity=-0.018 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcChHHHHHHHHHhhCCCcc-----HHHHHHHHhccCHHHHHHHHcCCCCCCCcccchhhHHHHHHHH
Q 001343 6 RELVFLILQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1096)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~ 80 (1096)
.....+...++...-|.++...+++=.....+ ...-.-....|+|++|+..+.......... ..+.+.+ -..
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l-a~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--IKGYTRK-AAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHH-HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--hHHHHHH-HHH
Confidence 34456666667777788888888776655543 112233456789999988887642221111 1122222 222
Q ss_pred HHHhhccCCHHHHHHHHHhhc
Q 001343 81 YLEALDRQDKAKAVDILVNDL 101 (1096)
Q Consensus 81 ~lell~~~~~~~A~~~l~~~l 101 (1096)
| ...|+.++|+..+++-+
T Consensus 94 ~---~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 94 L---EAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp H---HHTTCHHHHHHHHHHHH
T ss_pred H---HHHhhHHHHHHHHHHHH
Confidence 2 34688889988887754
No 381
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=34.54 E-value=94 Score=32.28 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=18.9
Q ss_pred HHHHHHHHhccCH---HHHHHHHcCC
Q 001343 38 MKYFEEKVQAGDW---DEVEKYLSGF 60 (1096)
Q Consensus 38 ~~~~~~~i~~g~w---~~~~~~l~~l 60 (1096)
+.+|++.|.+|+| -+|...++.+
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi 41 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLV 41 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHH
Confidence 5789999999999 7887777665
No 382
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=34.49 E-value=4.9e+02 Score=28.45 Aligned_cols=114 Identities=12% Similarity=0.168 Sum_probs=59.7
Q ss_pred ceEEEEEcCCCC-cEEEEEeCCCeEEEEecCCCCeeecccceeecccccCccccccccc----cCCCCEEEEEEcCC---
Q 001343 346 TVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK----DVPISVSRVAWSPD--- 417 (1096)
Q Consensus 346 ~V~~v~fsp~g~-~llasg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~V~~l~~spd--- 417 (1096)
.-+.|+|.|+|. ++|++ ...|.|++++... ..... .+ -++ ...+.. +.......|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~-er~G~i~~~~~~g-~~~~~-~~--~~~-------~~~~~~g~~~~~e~Gllgia~~P~f~~ 82 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFIL-EKEGYVKILTPEG-EIFKE-PY--LDI-------HKLVQSGIKGGDERGLLSLAFHPNYKK 82 (463)
T ss_dssp SEEEEECCSSSSCCEEEE-ETTTEEEEECTTS-CBCSS-CS--EEC-------TTTBCCCCSSSCCCSEEEEEECTTHHH
T ss_pred CceEEEECCCCCeEEEEE-eCCceEEEEeCCC-Ceeee-ee--cCC-------cceeccCccccCCCcceeeEeCCCCcC
Confidence 568999999995 45654 5789999997532 21110 00 010 000111 23567899999996
Q ss_pred -CCEEEEEEC--C----------CeEEEEEccCC--C-----ccccceeec--ccccCEEEEEEecCCCcEEEEEEeC
Q 001343 418 -GNYVGVAFT--K----------HLIQLYSYAGS--N-----DLRQHSQID--AHVGAVNDLAFAYPNKLLCVVTCGD 473 (1096)
Q Consensus 418 -~~~l~s~~~--d----------g~i~vwd~~~~--~-----~~~~~~~l~--~h~~~v~~l~~s~d~~~~~l~s~s~ 473 (1096)
+.+.++-+. + ..|.-|.+..+ . ..+.+..+. ........|+|.|||. +.++.+.
T Consensus 83 n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~--LYv~~Gd 158 (463)
T 2wg3_C 83 NGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF--LYIILGD 158 (463)
T ss_dssp HCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC--EEEEECC
T ss_pred CCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc--EEEEeCC
Confidence 433333222 1 14445666432 1 011111221 1122467999999997 4555443
No 383
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=34.27 E-value=1.2e+02 Score=25.91 Aligned_cols=100 Identities=9% Similarity=0.050 Sum_probs=52.4
Q ss_pred HHHHHHcChHHHHHHHHHhhCCCcc-H----HHHHHHHhccCHHHHHHHHcCCCCCCCcccchhhHHHHHHHHHHHhhcc
Q 001343 13 LQFLEEEKFKESVHKLEKESGFFFN-M----KYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDR 87 (1096)
Q Consensus 13 ~q~L~~~g~~~s~~~L~~Esg~~~~-~----~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~lell~~ 87 (1096)
..+++..-|.++...+++=-.+..+ . ..=.-....|+|++|+..+.+....+.+. .. +.+ ..-..| ...
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~-a~~-~lg~~~---~~~ 94 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IK-GYI-RKAACL---VAM 94 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHH-HHHHHH---HHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hH-HHH-HHHHHH---HHC
Confidence 3466666678887777665444433 1 11123345688888888887642222221 11 222 222222 346
Q ss_pred CCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001343 88 QDKAKAVDILVNDLKVFSTFNEELFKEITQLL 119 (1096)
Q Consensus 88 ~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~~~ 119 (1096)
|+.++|+..+++-+.-- ..+++-...|..+|
T Consensus 95 ~~~~~A~~~~~~al~l~-P~~~~a~~~l~~~l 125 (126)
T 4gco_A 95 REWSKAQRAYEDALQVD-PSNEEAREGVRNCL 125 (126)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHC-cCCHHHHHHHHHhc
Confidence 88888888887754311 12445455555443
No 384
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=34.20 E-value=1.1e+02 Score=34.62 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=42.1
Q ss_pred CeeeeeecCCCcEEEEec-C------------CeEEEEEcccceEEEeecCC-CCCeeEEEEecCCCcEEEEe
Q 001343 833 AVPCIALSKNDSYVMSAT-G------------GKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQDNNIIAIG 891 (1096)
Q Consensus 833 ~v~~l~~s~dg~~la~~~-d------------g~v~iwd~~~~~~~~~~~~h-~~~i~~l~~s~~d~~~l~s~ 891 (1096)
....|+|+++|.+.+..+ . +.|..++..+|++.+.+.+. ...++.++|+| |++.|+++
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSP-D~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECC-CCCEEEEE
Confidence 456799999998777332 1 15777777788877666554 35789999999 88877765
No 385
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=34.16 E-value=3.7e+02 Score=26.92 Aligned_cols=161 Identities=11% Similarity=0.068 Sum_probs=84.4
Q ss_pred CCCeeeeeecC-CCcEEEEec-CCeEEEEEcccce------EEEeecCCCCCeeEEEEecCCCcEEEEeeCCCeEEEEee
Q 001343 831 EEAVPCIALSK-NDSYVMSAT-GGKISLFNMMTFK------VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNV 902 (1096)
Q Consensus 831 ~~~v~~l~~s~-dg~~la~~~-dg~v~iwd~~~~~------~~~~~~~h~~~i~~l~~s~~d~~~l~s~~~dg~i~iw~~ 902 (1096)
...|..+.... +..+++.++ +|.++-..+.... ..-.++ ..+.+..+.... +...++..+.+|.+..++.
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEEEh
Confidence 45565554321 456777777 7999998876542 111232 234566666655 5667888889998877765
Q ss_pred ccceeeeeeccccccccceeeecCCCCCCCCCceEEEecCCcEEEE-EecceEEEEEcccceec-------cccccCCCC
Q 001343 903 RVDELCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERI-------RQWTPQDAL 974 (1096)
Q Consensus 903 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~-~~d~~i~iwd~~~~~~~-------~~~~~~~~~ 974 (1096)
..-...- ....+...-.+... ..|..+...+++..++. +..|......+...... ..+ ..
T Consensus 145 ~eip~~g------R~a~Gv~~i~L~~~--d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~--- 212 (276)
T 3no0_A 145 REVPPST------PGARGVQGIKLEKN--DETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GT--- 212 (276)
T ss_dssp GGSCBCC------TTCCCEECCCCCTT--CCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CS---
T ss_pred hhCCCcC------CCCCCEEEEccCCC--CEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cC---
Confidence 4322000 00011111122221 25566555555555555 78888888777543321 112 11
Q ss_pred CCCceEEEEeeCCcEEEEEecCCcEEE--EecC
Q 001343 975 SAPISCAVYSCNSQLVFATFCDGNIGV--FDAD 1005 (1096)
Q Consensus 975 ~~~i~~l~~s~dg~~la~~~~dg~i~v--wd~~ 1005 (1096)
.+.+..+....+...++..+.+|.+.. ++.+
T Consensus 213 ~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 213 KDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp SSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred CCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 334444433333345555666666666 6554
No 386
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=33.98 E-value=2e+02 Score=23.75 Aligned_cols=46 Identities=2% Similarity=0.062 Sum_probs=26.4
Q ss_pred ceEEEecCCcEEEEEecceEEEEEcccceeccccccCCCCCCCceEEEEeeCCcEEEE
Q 001343 935 TRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFA 992 (1096)
Q Consensus 935 ~~v~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~ 992 (1096)
..+.+..||.+++...++. .||...+.. ......+.+-+||.+++.
T Consensus 53 ~~L~l~~dGnLvL~d~~~~-~vWss~t~~-----------~~~~~~l~L~ddGNlVly 98 (105)
T 4h3o_A 53 CSAVLQSDGNFVVYDSSGR-SLWASHSTR-----------GSGNYILILQDDGNVIIY 98 (105)
T ss_dssp CEEEECTTSCEEEECTTCC-EEEECCCCC-----------CSSCEEEEECTTSCEEEE
T ss_pred EEEEEeCCccEEEECCCcE-EEEEecCCC-----------CCCCEEEEEeCCCeEEEE
Confidence 4578888888777644443 367654321 122234555667777665
No 387
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=32.79 E-value=1.3e+02 Score=34.33 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=48.0
Q ss_pred cEEEEEEcCCCCEEEEEeecc--------CCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEE
Q 001343 540 WCTTMLYSADGSRLFSCGTSK--------DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV 603 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~~~--------~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 603 (1096)
..-.|+|++.|++++.--.+. .+...+.+.+..+++..+.+.++.+..++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 457799999998665542110 1235677778888999888888888789999999999887665
No 388
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=32.54 E-value=1.9e+02 Score=29.04 Aligned_cols=106 Identities=11% Similarity=0.112 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcChHHHHHHHHHhhCCCcc-----HHHHHHHHhccCHHHHHHHHcCCCCCCCcccchhhHHHHHHHHHHH
Q 001343 9 VFLILQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLE 83 (1096)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~le 83 (1096)
+.+-..++..--|.++...|++=-....+ ...-+-.+..|++++|+..+.++.....+. ....-..-++
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~------~~~~~~~~~~ 194 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT------RYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH------HHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch------HHHHHHHHHH
Confidence 44445555666677777777665554443 223345567799999999998873332221 1112233344
Q ss_pred hhccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcc
Q 001343 84 ALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTL 121 (1096)
Q Consensus 84 ll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~~~~~ 121 (1096)
+...++..+|+..|++-+.-- ..+++-...|+.++..
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQ 231 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHH
Confidence 555667777777777654322 1245556666665543
No 389
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=31.96 E-value=4.4e+02 Score=27.12 Aligned_cols=236 Identities=7% Similarity=0.042 Sum_probs=118.0
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCcccc-ceeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-c---------CC
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQ-HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L---------SG 484 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~---------~~ 484 (1096)
|+..++++.+.+|.|+--.+..-+.... -..+.. .+.+..+....... .|+..+..|.++-.. . .|
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d--~ll~fT~~Gr~~~~~~~elp~~~r~a~G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKD--VLLLFTNKGNYLYCPVHELPDIRWKDLG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTS--EEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCC--EEEEEECCCEEEEEEHHHCcCCCCCCCC
Confidence 5667888999999998776542110000 001222 23444444444445 566677788766655 1 12
Q ss_pred ceEEE---eeCCCCCeEEEEeeec-CCCcEEEEEECCCeEEEEEcCCC------CeeeEEeC-CCCcEEEEEEcCCCCEE
Q 001343 485 RKLFN---FEGHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTM------GSRVDYDA-PGHWCTTMLYSADGSRL 553 (1096)
Q Consensus 485 ~~~~~---~~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~-~~~~i~~l~~s~~~~~l 553 (1096)
.++.. +. ....|.++..... .++.+++..+.+|.++-..+... .....+.. .+..+..+........+
T Consensus 80 ~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i 158 (323)
T 1wp5_A 80 QHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNEL 158 (323)
T ss_dssp EEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEE
T ss_pred cChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEE
Confidence 21111 11 2334665543322 12467999999999999876421 12221111 22455555554445556
Q ss_pred EEEeeccCCCCeEEEEeCCC-------CeeeEEEcCcCccceEEEEEeCCCC-EEEEEEcCCeEEEEeCCC-------Ce
Q 001343 554 FSCGTSKDGDSFLVEWNESE-------GTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDN-------VN 618 (1096)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~-------~~ 618 (1096)
+..+. .|.+..++... .+-++.+.-..+..+..+..-+++. .+++.+..|..+..++.. ++
T Consensus 159 ~l~T~----~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k 234 (323)
T 1wp5_A 159 FLVTH----NGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR 234 (323)
T ss_dssp EEEET----TSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC
T ss_pred EEEeC----CCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC
Confidence 66654 77777776542 1112222222222344443333444 788888888887777643 11
Q ss_pred EEEEeecC-CCCCCccEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001343 619 ILTSTDAE-GGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1096)
Q Consensus 619 ~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 659 (1096)
-+..+... .....+..+....++..++..+..|.+..+.+.
T Consensus 235 Gv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 235 GVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp CEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred CEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 12222111 111133333222334456666667766555553
No 390
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=29.71 E-value=1.9e+02 Score=32.63 Aligned_cols=65 Identities=12% Similarity=0.089 Sum_probs=46.9
Q ss_pred cEEEEEEcCCCCEEEEEeec--------cCCCCeEEEEeCCCCeeeEEEcCcCccceEEEEEeCCCCEEEEEE
Q 001343 540 WCTTMLYSADGSRLFSCGTS--------KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (1096)
Q Consensus 540 ~i~~l~~s~~~~~l~~~~~~--------~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 604 (1096)
....|+|.++|.+.+..... ..+...++.++..+++..+.+.+.....++.++|+||++.|++.-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 56789999999877743211 012347888888888887777665555688899999998887763
No 391
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=29.06 E-value=2.5e+02 Score=23.45 Aligned_cols=26 Identities=0% Similarity=-0.003 Sum_probs=16.6
Q ss_pred ceEEEecCCcEEEEEecceEEEEEccc
Q 001343 935 TRVQFNADQVRMLVVHETQLAIYDASK 961 (1096)
Q Consensus 935 ~~v~fs~dg~~l~~~~d~~i~iwd~~~ 961 (1096)
..+.+..+|.+++...++.+ +|...+
T Consensus 59 ~~l~l~~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEECTTSCE-EEECSC
T ss_pred EEEEEeCCCcEEEECCCCCE-EEECCC
Confidence 45778888887776444443 676543
No 392
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=28.56 E-value=1.4e+02 Score=25.45 Aligned_cols=101 Identities=14% Similarity=0.179 Sum_probs=50.1
Q ss_pred HHHHHcChHHHHHHHHHhhCCCcc-HHH----HHHHHhccCHHHHHHHHcCCCCC-CCcccchhhHHHHHHHHHHHhhcc
Q 001343 14 QFLEEEKFKESVHKLEKESGFFFN-MKY----FEEKVQAGDWDEVEKYLSGFTKV-DDNRYSMKIFFEIRKQKYLEALDR 87 (1096)
Q Consensus 14 q~L~~~g~~~s~~~L~~Esg~~~~-~~~----~~~~i~~g~w~~~~~~l~~l~~~-~~~~~~~~~~~~l~~~~~lell~~ 87 (1096)
.+++..-|.++...+++=-.+.++ ... =.-....|+|++|+..+.+.... +........+-.++-..=.-+...
T Consensus 17 ~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~ 96 (127)
T 4gcn_A 17 AAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQ 96 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHc
Confidence 455666677777777664444443 111 12345568899988887653111 111000001111111111123346
Q ss_pred CCHHHHHHHHHhhcccccccCHHHHHHHH
Q 001343 88 QDKAKAVDILVNDLKVFSTFNEELFKEIT 116 (1096)
Q Consensus 88 ~~~~~A~~~l~~~l~~~~~~~~~~~~~l~ 116 (1096)
+++++|+..+++-|... .+++.+..|.
T Consensus 97 ~~~~~A~~~~~kal~~~--~~~~~~~~l~ 123 (127)
T 4gcn_A 97 NDLSLAVQWFHRSLSEF--RDPELVKKVK 123 (127)
T ss_dssp TCHHHHHHHHHHHHHHS--CCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC--cCHHHHHHHH
Confidence 88889988887755422 2455555444
No 393
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=28.49 E-value=6.8e+02 Score=28.21 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=32.9
Q ss_pred CcCccceEEEEEeCC--CCEEEEEEcC----CeEEEEeCCCCeEEEEeecCCCCCCccEEEEeC
Q 001343 582 GFRKKSNGVVQFDTT--QNHFLAVGED----SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1096)
Q Consensus 582 ~~~~~~i~~~~~~~~--~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 639 (1096)
+|.. .+....|.|+ |-.++.+.++ ....+.|..+|+.+.......+.+....-.|.|
T Consensus 365 gHGD-a~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~~D~Gr~~~~Didp 427 (620)
T 2zuy_A 365 GHGD-AMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAGTDVGRGMAAHIDP 427 (620)
T ss_dssp CCCS-CEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCEEEEECCCT
T ss_pred CCCc-eeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCcccCCceEEEecCC
Confidence 3443 5555667776 3445555443 256778999999888776544433333334444
No 394
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=28.17 E-value=2.6e+02 Score=23.20 Aligned_cols=25 Identities=8% Similarity=0.224 Sum_probs=15.4
Q ss_pred ceEEEecCCcEEEEEecceEEEEEcc
Q 001343 935 TRVQFNADQVRMLVVHETQLAIYDAS 960 (1096)
Q Consensus 935 ~~v~fs~dg~~l~~~~d~~i~iwd~~ 960 (1096)
..+.+..||.+++...++. .+|...
T Consensus 52 ~~l~l~~dGNLvl~~~~~~-~~W~S~ 76 (109)
T 3dzw_A 52 CHLSMQSDGNLVVYSPRNN-PIWASN 76 (109)
T ss_dssp CEEEECTTSCEEEECTTSC-EEEECC
T ss_pred EEEEEeCCCCEEEECCCCC-EEEECC
Confidence 4567788888777643343 367543
No 395
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=27.42 E-value=79 Score=25.47 Aligned_cols=85 Identities=11% Similarity=0.019 Sum_probs=40.0
Q ss_pred HHHHHcChHHHHHHHHHhhCCCcc-----HHHHHHHHhccCHHHHHHHHcCCCCCCCcccchhhHHHHHHHHHHHhhcc-
Q 001343 14 QFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDR- 87 (1096)
Q Consensus 14 q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~lell~~- 87 (1096)
-++...-|.++...+++=.....+ ...=.-....|+|++|+..+.+............+.+. .-.=+...
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~----l~~~~~~~~ 90 (112)
T 2kck_A 15 LQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA----KADALRYIE 90 (112)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH----HHHHHTTCS
T ss_pred HHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH----HHHHHHHHh
Confidence 344444566666666543332222 11122334568888888777653122111000112211 11123456
Q ss_pred CCHHHHHHHHHhhcc
Q 001343 88 QDKAKAVDILVNDLK 102 (1096)
Q Consensus 88 ~~~~~A~~~l~~~l~ 102 (1096)
|+.++|+.++++-+.
T Consensus 91 ~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 91 GKEVEAEIAEARAKL 105 (112)
T ss_dssp SCSHHHHHHHHHHGG
T ss_pred CCHHHHHHHHHHHhh
Confidence 777888877776543
No 396
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=27.15 E-value=35 Score=26.87 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcChHHHHHHHHHhhCCCcc
Q 001343 6 RELVFLILQFLEEEKFKESVHKLEKESGFFFN 37 (1096)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~ 37 (1096)
.++.+-|+++|++.| .++..|-+|-|++-.
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~ 45 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR 45 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSSCHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH
Confidence 467788899999999 999999999999875
No 397
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=26.88 E-value=37 Score=19.45 Aligned_cols=15 Identities=20% Similarity=0.481 Sum_probs=10.8
Q ss_pred chHHHHHHHHHHHHH
Q 001343 4 LSRELVFLILQFLEE 18 (1096)
Q Consensus 4 ~~~e~~~li~q~L~~ 18 (1096)
+-+|+++||-||-..
T Consensus 3 fMkDvlql~qQy~qs 17 (26)
T 1kdl_A 3 FMKDVLRLIEQYVSS 17 (26)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 347888888887543
No 398
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=26.82 E-value=40 Score=26.93 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=16.2
Q ss_pred CCcchHHHHHHHHHHHHHc
Q 001343 1 MSSLSRELVFLILQFLEEE 19 (1096)
Q Consensus 1 ~~~~~~e~~~li~q~L~~~ 19 (1096)
|...++++...|+|||++.
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 6667899999999999864
No 399
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=25.58 E-value=37 Score=23.96 Aligned_cols=16 Identities=31% Similarity=0.818 Sum_probs=13.1
Q ss_pred chHHHHHHHHHHHHHc
Q 001343 4 LSRELVFLILQFLEEE 19 (1096)
Q Consensus 4 ~~~e~~~li~q~L~~~ 19 (1096)
++++++..|+|||+..
T Consensus 1 ~~K~la~sIi~FL~~~ 16 (52)
T 4gof_A 1 MKKRLAYAIIQFLHDQ 16 (52)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHh
Confidence 4678999999999764
No 400
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=25.01 E-value=2.6e+02 Score=22.85 Aligned_cols=94 Identities=11% Similarity=0.098 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcChHHHHHHHHHhhCCCcc-----HHHHHHHHhccCHHHHHHHHcCCCCC-CCcccchhhHHHHHHHHHH
Q 001343 9 VFLILQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKV-DDNRYSMKIFFEIRKQKYL 82 (1096)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~l~~~-~~~~~~~~~~~~l~~~~~l 82 (1096)
..+...++...-|.++...+++=.....+ ...-.-....|+|++|+..+...... +...........++...=.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 44555566666677777777654433332 12223345679999999988764121 1110000011112222222
Q ss_pred HhhccCCHHHHHHHHHhhcc
Q 001343 83 EALDRQDKAKAVDILVNDLK 102 (1096)
Q Consensus 83 ell~~~~~~~A~~~l~~~l~ 102 (1096)
-+...|+.++|+.++++-+.
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 23456899999999887544
No 401
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=24.36 E-value=26 Score=27.34 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHc-----ChHHHHHHHHHhhCCCcc
Q 001343 8 LVFLILQFLEEE-----KFKESVHKLEKESGFFFN 37 (1096)
Q Consensus 8 ~~~li~q~L~~~-----g~~~s~~~L~~Esg~~~~ 37 (1096)
-.+-|++||++. ||.-|...|.++.|++..
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~ 39 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIY 39 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHH
Confidence 345566666665 999999999999999754
No 402
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=23.20 E-value=3.7e+02 Score=23.37 Aligned_cols=86 Identities=10% Similarity=-0.032 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcChHHHHHHHHHhhCCCcc-H----HHHHHHHhccCHHHHHHHHcCCCCC-CCcccchhhHHHHHHHHHH
Q 001343 9 VFLILQFLEEEKFKESVHKLEKESGFFFN-M----KYFEEKVQAGDWDEVEKYLSGFTKV-DDNRYSMKIFFEIRKQKYL 82 (1096)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~L~~Esg~~~~-~----~~~~~~i~~g~w~~~~~~l~~l~~~-~~~~~~~~~~~~l~~~~~l 82 (1096)
..+-..++...-|.++...+++=..+..+ . ..=.-....|+|++|+..+...... |++. . +.|.+ -..
T Consensus 25 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~-~~~~l-g~~-- 98 (148)
T 2vgx_A 25 YSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP--R-FPFHA-AEC-- 98 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--H-HHHHH-HHH--
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--h-HHHHH-HHH--
Confidence 34445555566677777777654444332 1 1112334668888888887664122 2221 1 22222 222
Q ss_pred HhhccCCHHHHHHHHHhhc
Q 001343 83 EALDRQDKAKAVDILVNDL 101 (1096)
Q Consensus 83 ell~~~~~~~A~~~l~~~l 101 (1096)
++..|+.++|+..+++-+
T Consensus 99 -~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 99 -LLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp -HHHTTCHHHHHHHHHHHH
T ss_pred -HHHcCCHHHHHHHHHHHH
Confidence 234688888888877643
No 403
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=23.13 E-value=9.5e+02 Score=28.07 Aligned_cols=62 Identities=15% Similarity=0.094 Sum_probs=39.0
Q ss_pred cCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCC-------CCCeEEEEeeecCCCcEEEEE
Q 001343 452 GAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH-------EAPVYSICPHHKENIQFIFST 514 (1096)
Q Consensus 452 ~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l~s~ 514 (1096)
+.|..|+++|.+.. .+..+...+.|..++..|+.-..+..+ ...|.+++++|...+.+++..
T Consensus 23 g~i~~i~~~p~~~~-~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 23 GFMPGIVFNETEKD-LIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp SCCCEEEECSSSTT-CEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred ceeeEEEECCCCCC-EEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 37999999998644 456666667776666555544433322 235889999885444444443
No 404
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=23.09 E-value=6.3e+02 Score=25.95 Aligned_cols=199 Identities=9% Similarity=0.052 Sum_probs=100.4
Q ss_pred cCCceEEEeecCCeEEEeeccCCccCCCCceeeecCccccccCccccccccccCCCcCCCeeee-eecCCCcEEEEecCC
Q 001343 774 NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI-ALSKNDSYVMSATGG 852 (1096)
Q Consensus 774 ~~~~~l~~~~~dg~v~vw~~~~~~~~~~g~~~~~~~i~~w~~~~~~~~~~~~~g~~~~~~v~~l-~~s~dg~~la~~~dg 852 (1096)
|+...+++.+.+|.|+--.+.... .. +. ....+. ..+.+..+ ..+....+++..+.|
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~-----------------~~-~~-~~~~lk---e~D~l~~~~~~~t~d~ll~fT~~G 60 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYA-----------------AS-NG-QDFAMK---DTDRLLAMLEMNTKDVLLLFTNKG 60 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHH-----------------HT-TT-CCCCCC---TTCCEEEEEEEETTSEEEEEETTS
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhh-----------------hc-Cc-cccccC---CCCEEEEEEEECCCCEEEEEECCC
Confidence 455567888888888765542110 00 00 011122 23333333 344455566666678
Q ss_pred eEEEEE---ccc------ceEEEe-ec-CCCCCeeEEEEecC--CCcEEEEeeCCCeEEEEeeccceeeeeecccccccc
Q 001343 853 KISLFN---MMT------FKVMTT-FM-SPPPASTFLAFHPQ--DNNIIAIGTEDSTIHIYNVRVDELCVWSIDTWEKRK 919 (1096)
Q Consensus 853 ~v~iwd---~~~------~~~~~~-~~-~h~~~i~~l~~s~~--d~~~l~s~~~dg~i~iw~~~~~~~~~w~~~~~~~~~ 919 (1096)
.++-+. +.. |..+.. +. .....|.++...++ ++.+++..+.+|.++--.+..-. ......
T Consensus 61 r~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~-------~~~r~~ 133 (323)
T 1wp5_A 61 NYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYK-------AQRYSK 133 (323)
T ss_dssp EEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGC-------CSCCSS
T ss_pred EEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhh-------hccccC
Confidence 755444 322 222222 11 12334665543331 25679999999999998876433 000001
Q ss_pred ce-eeecCCCCCCCCCceEEEecCCcEEE-EEecceEEEEEcccceeccc-------cccCCCCCCCceEEEEeeCCc-E
Q 001343 920 SV-TIHIPAGKTPTGDTRVQFNADQVRML-VVHETQLAIYDASKMERIRQ-------WTPQDALSAPISCAVYSCNSQ-L 989 (1096)
Q Consensus 920 ~~-~~~~~~~~~~~~v~~v~fs~dg~~l~-~~~d~~i~iwd~~~~~~~~~-------~~~~~~~~~~i~~l~~s~dg~-~ 989 (1096)
+. .+...++ . .+..+........++ .+.+|.+..+....-..... +.-.. .+.|.++..-+++. .
T Consensus 134 G~~ai~l~e~--d-~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~--~d~Vv~~~~~~~~~~~ 208 (323)
T 1wp5_A 134 PLTGINLKND--D-QVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE--GDYIVSGQLITSKDES 208 (323)
T ss_dssp CEECSCCCTT--C-CEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT--TCCEEEEEEECCTTCE
T ss_pred ceEEEEeCCC--C-EEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCC--CCEEEEEEEEcCCCcE
Confidence 11 1222222 2 455554444444444 48889988888754322111 11111 45566665444455 6
Q ss_pred EEEEecCCcEEEEecCC
Q 001343 990 VFATFCDGNIGVFDADT 1006 (1096)
Q Consensus 990 la~~~~dg~i~vwd~~~ 1006 (1096)
|++.+..|..+..+++.
T Consensus 209 ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 209 IVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEEETTSEEEEEEGGG
T ss_pred EEEEECCCceEEEEHHH
Confidence 77788888888777653
No 405
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=21.79 E-value=6.5e+02 Score=25.64 Aligned_cols=192 Identities=10% Similarity=0.059 Sum_probs=103.6
Q ss_pred CCCCEEEEEECCCeEEEEEccCCCcccc----c--eeecccccCEEEEEEecCCCcEEEEEEeCCCcEEEEE-cC-----
Q 001343 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQ----H--SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS----- 483 (1096)
Q Consensus 416 pd~~~l~s~~~dg~i~vwd~~~~~~~~~----~--~~l~~h~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~----- 483 (1096)
++..++++.+.+|.|+--.+..-+..+. . ..+.. .+.+..+....... .++..+..|.++-.. ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~--~ll~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHD--YLFMISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTC--EEEEEETTSEEEEEEGGGSCC--
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCC--EEEEEECCCeEEEEEHHHCCCCC
Confidence 4567888999999999877654221110 0 01222 23444444444444 566677788877665 21
Q ss_pred ----CceE---EEeeCCCCCeEEEEeeec-CCCcEEEEEECCCeEEEEEcCCCCe-----ee--EEeCCCCcEEEEEEcC
Q 001343 484 ----GRKL---FNFEGHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMGS-----RV--DYDAPGHWCTTMLYSA 548 (1096)
Q Consensus 484 ----~~~~---~~~~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~-----~~--~~~~~~~~i~~l~~s~ 548 (1096)
|..+ ..+. ....|.++..... .+..+++..+..|.++...+..... .. .+.. +..+..+....
T Consensus 83 r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~ 160 (312)
T 1suu_A 83 RASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVF 160 (312)
T ss_dssp -----CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEEC
T ss_pred ccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeC
Confidence 1110 1122 2234555543221 1346788999999999887643211 11 2222 34555555555
Q ss_pred CCCEEEEEeeccCCCCeEEEEeCCCC-------eeeEEEcCcCccceEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 001343 549 DGSRLFSCGTSKDGDSFLVEWNESEG-------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1096)
Q Consensus 549 ~~~~l~~~~~~~~~~~~i~iwd~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1096)
++..++..+. .|.+..+....- +=++.+.-..+..+..+..-.++..+++.+..|.....++..
T Consensus 161 ~~~~i~l~T~----~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 161 KDEKVICLSK----KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp TTCEEEEEET----TSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CCCEEEEEeC----CCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 4556666665 778877766431 112222222222444444444566788889999988888753
No 406
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=21.69 E-value=2.4e+02 Score=24.76 Aligned_cols=93 Identities=14% Similarity=0.196 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhhCCCcc--H---HHHHHHHhccCHHHHHHHHcCCCCC-CCcccchhhHHHHHHHHHHHhhccCCHHHHH
Q 001343 21 FKESVHKLEKESGFFFN--M---KYFEEKVQAGDWDEVEKYLSGFTKV-DDNRYSMKIFFEIRKQKYLEALDRQDKAKAV 94 (1096)
Q Consensus 21 ~~~s~~~L~~Esg~~~~--~---~~~~~~i~~g~w~~~~~~l~~l~~~-~~~~~~~~~~~~l~~~~~lell~~~~~~~A~ 94 (1096)
+.++.+.+++-.....+ . ..=+-....|+|++|+..+.+.... |++. . +.+ ..-..| ...|+.++|+
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~--~-a~~-~lg~~~---~~~~~~~~A~ 85 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP--K-AHR-FLGLLY---ELEENTDKAV 85 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--H-HHH-HHHHHH---HHTTCHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--H-HHH-HHHHHH---HHcCchHHHH
Confidence 34555555555544443 1 1113346779999999999874222 2221 1 222 222333 3469999999
Q ss_pred HHHHhhcccccccCHHHHHHHHHHhcc
Q 001343 95 DILVNDLKVFSTFNEELFKEITQLLTL 121 (1096)
Q Consensus 95 ~~l~~~l~~~~~~~~~~~~~l~~~~~~ 121 (1096)
..+++-+.-- ..+++-+..|+.++..
T Consensus 86 ~~~~~al~~~-p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 86 ECYRRSVELN-PTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 9998854322 2356777788876653
No 407
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=21.49 E-value=7.5e+02 Score=27.28 Aligned_cols=82 Identities=11% Similarity=0.022 Sum_probs=43.9
Q ss_pred HHHHHHHHcChHHHHHHHH--HhhCCCccH----HHHHHHHhccCHHHHHHHHcCCCC--CCCcccchhhHHHHHHHHHH
Q 001343 11 LILQFLEEEKFKESVHKLE--KESGFFFNM----KYFEEKVQAGDWDEVEKYLSGFTK--VDDNRYSMKIFFEIRKQKYL 82 (1096)
Q Consensus 11 li~q~L~~~g~~~s~~~L~--~Esg~~~~~----~~~~~~i~~g~w~~~~~~l~~l~~--~~~~~~~~~~~~~l~~~~~l 82 (1096)
||--|.+.--+.++.+.|+ ++.|+.++. ..+......|++++|+.++..+.. ...+. .-|-..-.-|
T Consensus 111 lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~----~ty~~Li~~~- 185 (501)
T 4g26_A 111 GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE----PELAALLKVS- 185 (501)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH----HHHHHHHHHH-
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHH-
Confidence 4444444444555555553 356777762 345556667888888777765411 11111 2333333333
Q ss_pred HhhccCCHHHHHHHHHh
Q 001343 83 EALDRQDKAKAVDILVN 99 (1096)
Q Consensus 83 ell~~~~~~~A~~~l~~ 99 (1096)
...|+.++|+.+|++
T Consensus 186 --~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 186 --MDTKNADKVYKTLQR 200 (501)
T ss_dssp --HHTTCHHHHHHHHHH
T ss_pred --hhCCCHHHHHHHHHH
Confidence 335778888777765
No 408
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=21.46 E-value=1.1e+03 Score=27.97 Aligned_cols=165 Identities=10% Similarity=0.042 Sum_probs=80.8
Q ss_pred ccCEEEEEEecCCCcEEEEEEeCCCcEEEEEcCCceEEEeeCC-------CCCeEEEEeeecCCCcEEEEEECCCe----
Q 001343 451 VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH-------EAPVYSICPHHKENIQFIFSTAIDGK---- 519 (1096)
Q Consensus 451 ~~~v~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l~s~~~dg~---- 519 (1096)
.+.|.+|+++|.... .++.++..+.|...+..|+.-..+..+ ...+.++++.|... ..++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~-~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~-~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKD-LLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNP-DRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTT-CEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEE-EEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCC-EEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCC-CEEEEEeCccCCCcc
Confidence 468999999997654 566677778777766556544433322 24689999876432 34444432211
Q ss_pred EEEEEcCCCCeee-EEeCC--------C-CcEEEEEEcCCC-CEEEEEeeccCCCCeEEEEeCCCCeeeEEEcC-----c
Q 001343 520 IKAWLYDTMGSRV-DYDAP--------G-HWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG-----F 583 (1096)
Q Consensus 520 i~iwd~~~~~~~~-~~~~~--------~-~~i~~l~~s~~~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-----~ 583 (1096)
-.||--....... ..... . ..+..+++.|.. ..++++.. .+.|+. ....|+.=..+.. .
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~----~~gl~~-S~DgG~TW~~~~~~~~~~~ 166 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTR----TEGIWK-SSDRAKTWTNVTSIPDAFT 166 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECS----SSCEEE-ESSTTSSCEEETTSCCCCS
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEec----cCCEEE-ECCCCcccCCCccCccccC
Confidence 2334333333222 21110 0 124567777743 34444432 222321 1222221112211 1
Q ss_pred CccceEEEEEeCC-CCEEEEEEcC-CeEEEEeCCCCeEEEEe
Q 001343 584 RKKSNGVVQFDTT-QNHFLAVGED-SQIKFWDMDNVNILTST 623 (1096)
Q Consensus 584 ~~~~i~~~~~~~~-~~~l~~~~~d-g~i~iwd~~~~~~~~~~ 623 (1096)
....+..+.++|. +..++++..+ +.|+ ...+.|+....+
T Consensus 167 ~~~~~~~i~~~p~~~~~~~~~~~~~~~v~-~S~DgG~TW~~~ 207 (789)
T 1sqj_A 167 NGIGYTSVIFDPERNGTIYASATAPQGMY-VTHDGGVSWEPV 207 (789)
T ss_dssp TTTCEEEEEECTTSTTCEEEEESSTTCEE-EESSTTSSCEEC
T ss_pred CCCCeEEEEECCCCCCEEEEEEcCCCeEE-EEcCCCcCcccC
Confidence 1125677888874 4566666654 4443 244445444333
No 409
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=21.40 E-value=2.2e+02 Score=25.25 Aligned_cols=87 Identities=9% Similarity=-0.003 Sum_probs=48.8
Q ss_pred HHHHHHHHHHcChHHHHHHHHHhhCCCcc-----HHHHHHHHhccCHHHHHHHHcCCCCCCCcccchhhHHHHHHHHHHH
Q 001343 9 VFLILQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLE 83 (1096)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~le 83 (1096)
..+-..++...-|.++...+++=-.+..+ ...=.-....|+|++|+..+........+. ..++|. +-..|
T Consensus 15 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~-lg~~~-- 89 (164)
T 3sz7_A 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--SKAWSR-LGLAR-- 89 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHH-HHHHH--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHH-HHHHH--
Confidence 44455566666677777777765544443 122233456789999988887642222221 112222 22222
Q ss_pred hhccCCHHHHHHHHHhhc
Q 001343 84 ALDRQDKAKAVDILVNDL 101 (1096)
Q Consensus 84 ll~~~~~~~A~~~l~~~l 101 (1096)
...|+.++|+..+++-+
T Consensus 90 -~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 90 -FDMADYKGAKEAYEKGI 106 (164)
T ss_dssp -HHTTCHHHHHHHHHHHH
T ss_pred -HHccCHHHHHHHHHHHH
Confidence 34588888988887643
No 410
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=21.13 E-value=3.3e+02 Score=22.39 Aligned_cols=91 Identities=8% Similarity=0.058 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHcChHHHHHHHHHhhCCCcc--------HHHHHHHHhccCHHHHHHHHcCC-CCCCCcccchhhHHHHHH
Q 001343 8 LVFLILQFLEEEKFKESVHKLEKESGFFFN--------MKYFEEKVQAGDWDEVEKYLSGF-TKVDDNRYSMKIFFEIRK 78 (1096)
Q Consensus 8 ~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--------~~~~~~~i~~g~w~~~~~~l~~l-~~~~~~~~~~~~~~~l~~ 78 (1096)
...+-..++...-|.++...+++=-....+ ...=.-....|+|++|+..+..+ ...+++.....++|.+-
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la- 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG- 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH-
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH-
Confidence 344555666677777777777653322111 11223345678888888887764 22222211111233222
Q ss_pred HHHHHhhccCCHHHHHHHHHhhcc
Q 001343 79 QKYLEALDRQDKAKAVDILVNDLK 102 (1096)
Q Consensus 79 ~~~lell~~~~~~~A~~~l~~~l~ 102 (1096)
..| ...|+.++|+..+++-+.
T Consensus 84 ~~~---~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 84 LSQ---YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHH---HHTTCHHHHHHHHHHHHH
T ss_pred HHH---HHcCCHHHHHHHHHHHHH
Confidence 222 246888888888776543
No 411
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=21.12 E-value=51 Score=25.54 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=26.5
Q ss_pred CcchHHHHHHHHHHHHHcChH-HHHHHHHHhhCCCcc
Q 001343 2 SSLSRELVFLILQFLEEEKFK-ESVHKLEKESGFFFN 37 (1096)
Q Consensus 2 ~~~~~e~~~li~q~L~~~g~~-~s~~~L~~Esg~~~~ 37 (1096)
+.-.+.+...|+..|.+.||- .+...+.++.|+..+
T Consensus 27 ~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~ 63 (76)
T 2k9l_A 27 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE 63 (76)
T ss_dssp CTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHH
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH
Confidence 345678999999999999995 455666666665543
No 412
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=20.57 E-value=4e+02 Score=22.73 Aligned_cols=86 Identities=12% Similarity=-0.014 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcChHHHHHHHHHhhCCCcc-H----HHHHHHHhccCHHHHHHHHcCCCCCCCcccchhhHHHHHHHHHHH
Q 001343 9 VFLILQFLEEEKFKESVHKLEKESGFFFN-M----KYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLE 83 (1096)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~L~~Esg~~~~-~----~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~le 83 (1096)
..+-..++...-|.++...+++=.....+ . ..=.-....|+|++|+..+.......++. .. +.|.+ -..
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~-~~~~l-g~~--- 95 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE-PR-FPFHA-AEC--- 95 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-TH-HHHHH-HHH---
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-cH-HHHHH-HHH---
Confidence 33444555555566666666554433332 1 11122345677777777766531211111 11 22211 112
Q ss_pred hhccCCHHHHHHHHHhh
Q 001343 84 ALDRQDKAKAVDILVND 100 (1096)
Q Consensus 84 ll~~~~~~~A~~~l~~~ 100 (1096)
+...|+.++|+..+++-
T Consensus 96 ~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 23357777777777653
No 413
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=20.44 E-value=3.8e+02 Score=25.24 Aligned_cols=108 Identities=8% Similarity=0.010 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHcChHHHHHHHHHhhCCCcc-H----HHHHHHHhccCHHHHHHHHcCCCC-CCCcccchhhHHHHHHHH
Q 001343 7 ELVFLILQFLEEEKFKESVHKLEKESGFFFN-M----KYFEEKVQAGDWDEVEKYLSGFTK-VDDNRYSMKIFFEIRKQK 80 (1096)
Q Consensus 7 e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-~----~~~~~~i~~g~w~~~~~~l~~l~~-~~~~~~~~~~~~~l~~~~ 80 (1096)
-...+-..++...-|.++...+++--...++ . ..=.-....|++++|+..+.+... .|++. . ..+.+ -..
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~--~-a~~~l-g~~ 82 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL--G-GYMVL-SEA 82 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--H-HHHHH-HHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--H-HHHHH-HHH
Confidence 3455566677777788888888887777665 1 122334567999999999986422 22221 1 22222 222
Q ss_pred HHHh--------hccCCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001343 81 YLEA--------LDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLL 119 (1096)
Q Consensus 81 ~lel--------l~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~~~ 119 (1096)
|+++ +..|+.++|+..+++-+.-- ..+++-+..|+.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~ 128 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVY 128 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 2222 12278899999888754321 12444555555544
No 414
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=20.36 E-value=4.4e+02 Score=26.37 Aligned_cols=90 Identities=10% Similarity=-0.028 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHcC--hHHHHHHHHHhhCCCcc-----HHHHHHHHhccCHHHHHHHHcCCCCCCCcccchhhHHHHHHH
Q 001343 7 ELVFLILQFLEEEK--FKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQ 79 (1096)
Q Consensus 7 e~~~li~q~L~~~g--~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~ 79 (1096)
+....+...+...| |.++...+++-..+..+ ...-.-....|++++|+..+........+. .. ..+. .-
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~-~~~~-l~- 166 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC-HL-PMLY-IG- 166 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC-SH-HHHH-HH-
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc-HH-HHHH-HH-
Confidence 34444445555555 45555555554444333 112233345577777776665531111111 00 1111 11
Q ss_pred HHHHhhccCCHHHHHHHHHhhcc
Q 001343 80 KYLEALDRQDKAKAVDILVNDLK 102 (1096)
Q Consensus 80 ~~lell~~~~~~~A~~~l~~~l~ 102 (1096)
.-+...|+.++|+.++++-+.
T Consensus 167 --~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 167 --LEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp --HHHHHTTCHHHHHHHHHHHHT
T ss_pred --HHHHHHhhHHHHHHHHHHHHH
Confidence 122335777777777766443
No 415
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=20.09 E-value=3.8e+02 Score=26.73 Aligned_cols=94 Identities=11% Similarity=0.011 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHcChHHHHHHHHHhhCCCcc---H----HH----HHHHHhccCHHHHHHHHcCC-CCCCCcccchhhHH
Q 001343 7 ELVFLILQFLEEEKFKESVHKLEKESGFFFN---M----KY----FEEKVQAGDWDEVEKYLSGF-TKVDDNRYSMKIFF 74 (1096)
Q Consensus 7 e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~----~~----~~~~i~~g~w~~~~~~l~~l-~~~~~~~~~~~~~~ 74 (1096)
++...+..++....|.++...+++.-..... . .. -.-....|++++|+..+.+. .......... ...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY-QNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT-HHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH-HHH
Confidence 4566777888888999998888755433221 0 00 01224568999999987542 1111111111 223
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHhhc
Q 001343 75 EIRKQKYLEALDRQDKAKAVDILVNDL 101 (1096)
Q Consensus 75 ~l~~~~~lell~~~~~~~A~~~l~~~l 101 (1096)
.++-..-.=+...|+.++|+.++.+-+
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444455556799999999998865
No 416
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=20.06 E-value=3.3e+02 Score=21.58 Aligned_cols=90 Identities=9% Similarity=-0.061 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcChHHHHHHHHHhhCCCcc-----HHHHHHHHhccCHHHHHHHHcCCCCCCCcccchhhHHHHHHHHH
Q 001343 7 ELVFLILQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1096)
Q Consensus 7 e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~ 81 (1096)
....+...++...-|.++...+++=-....+ ...-.-....|+|++|+..+.......... .. +.+.+- ..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~-~~~~~a-~~- 81 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GK-GYSRKA-AA- 81 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HH-HHHHHH-HH-
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-HH-HHHHHH-HH-
Confidence 3455666667777788877777664433332 112233455689999988887642222111 11 222221 12
Q ss_pred HHhhccCCHHHHHHHHHhhcc
Q 001343 82 LEALDRQDKAKAVDILVNDLK 102 (1096)
Q Consensus 82 lell~~~~~~~A~~~l~~~l~ 102 (1096)
+...|+.++|+..+++-+.
T Consensus 82 --~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 82 --LEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp --HHHTTCHHHHHHHHHHHHT
T ss_pred --HHHHhhHHHHHHHHHHHHH
Confidence 2346888889888876543
Done!