BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001344
(1096 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A6P|A Chain A, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|F Chain F, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
Length = 1204
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 227/1176 (19%), Positives = 445/1176 (37%), Gaps = 171/1176 (14%)
Query: 9 EEWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVH 68
EE +K + +V E+++RE W ++ L +LS +G Q ELV +L L ED+
Sbjct: 108 EENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTF 167
Query: 69 NXXXXXXXXXXXXXXXTQXXXXXXXXXXXXXXRHFGAALSEVGRQQLDVAKQHAATVTAT 128
+ Q A+ + A
Sbjct: 168 QTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAA 227
Query: 129 LNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLH------ACEFFKLVSPRKGPADA 182
LN + Y +W + + C L A E + RKG +
Sbjct: 228 LNTLAGYIDWVSMSHITA----ENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLED 283
Query: 183 SASEF----ESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSN 238
+ AMH + G G + E + F + +C+ + +LG
Sbjct: 284 RKPLMVLFGDVAMHYILSAAQTADG----------GGLVEKHYVFLKRLCQVLCALGNQL 333
Query: 239 LHCIAREDTI-----LSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTG 293
+ + + YL+ L + H L + + W AL R
Sbjct: 334 CALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH------------ 381
Query: 294 DGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGP-LELWS 352
++ SR +L+ I L S LVK T P E
Sbjct: 382 -------------EILSRDPLLLA-----IIPKYLRASMTNLVKMGFPSKTDSPSCEYSR 423
Query: 353 DDFEGKGDFSQY----RSRLLELVKFVASNKPLVAGVKVSERVMAIINSLL--------- 399
DF+ DF+ + R++ E+++ P + E + +++ L
Sbjct: 424 FDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCS 483
Query: 400 --------ISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEG-- 449
+ ++ + E+M LE+V++ +F N+ E+ ++ +G
Sbjct: 484 AVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNR-----EEIPVN-----DGIE 533
Query: 450 LLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVF----K 505
LL+ +L+ +P ++ + + AL PF+ Y P+ + V SKLF +S+ F K
Sbjct: 534 LLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLF---SSVTFETVEESK 590
Query: 506 DPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMA-YLQREGRLLRGEHNLLGE 564
P T + R+ R C+S I++ + + +LP+ + + + L E L + E L E
Sbjct: 591 APRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALME 650
Query: 565 AFLVMASAAGIQQQQEV-LAWLLEPLSQQWMQLEWQ--------------------NNYL 603
A +++++ ++Q+V L L+ P++ W+ + + L
Sbjct: 651 ALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMHRVLSDVDAFIAYVGTDQKSCDPGL 710
Query: 604 SEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLN---LQSSSAENSAVMHPMA 660
+P GL R + ++ + +R + + +A + +S+ N +P
Sbjct: 711 EDPCGLNR----ARMSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGYTSSGNPIFRNPCT 766
Query: 661 SHLSWMXXXXXXXXRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAV 720
+ + R +++++P + + A+ M DAE+ ++LG P +
Sbjct: 767 EQILKLLDNLLALIRTHNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQP-----LL 821
Query: 721 AFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSA-TIGDPFFKSLD-SGSVV 778
D T E ++ + + ++ +++LG + ++ F+ D + ++
Sbjct: 822 ELNDSPVFKTVLE--------RMQRFFSTLYENCFHILGKAGPSMQQDFYTVEDLATQLL 873
Query: 779 VALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSS 838
+ N+ ++ +R ++ + +V FCP + +E + +L PLF + LS W
Sbjct: 874 SSAFVNLNNIPDYRLRPMLRVFVKPLVLFCPPEHYEALVSPILGPLFTYLHMRLSQKWQV 933
Query: 839 LMHE--VAGSDLKV-------EVMEEKLLRDLTREICSLLSTMASS---GLNNGIPPIEQ 886
+ + G D E++EE+L+R LTRE+ L++ S ++ PP +
Sbjct: 934 INQRSLLCGEDEAADENPESQEMLEEQLVRMLTREVMDLITVCCVSKKGADHSSAPPADG 993
Query: 887 SGHFYRVDVLSLKDLDAFASNSMVG-FLLKHKDLALPALQISLEAFTWTDGEAVTKVSSF 945
++ A A + +G L+KH+D+ L + + W D + + +S
Sbjct: 994 DDEEMMATEVT---PSAMAELTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQ 1050
Query: 946 CSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALE-SNAVISADLVGLCREIFIYMCDRD 1004
+L + S + L V+ LF+++++GL + + A LV L +I+ + R
Sbjct: 1051 LCWPLLKQVLSGTL-LADAVTW-LFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRY 1108
Query: 1005 PAPRQVLLSLPCITPQDLLAFE-----DALTKTASPREQKQHMRSLLVLGTGNNLKALAA 1059
R V+ +P I L F+ +L K A R + Q R L+ G
Sbjct: 1109 LEIRAVMEQIPEIQKDSLDQFDCKLLNPSLQKVADKRRKDQFKR--LIAGCIGKPLGEQF 1166
Query: 1060 QKSVNVITNVSTRPRSSDNAPESRTEEGESIGLAAI 1095
+K V+ I N+ + + + E+ + + GLA I
Sbjct: 1167 RKEVH-IKNLPSLFKKTKPMLETEVLDNDGGGLATI 1201
>pdb|3LOY|A Chain A, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|B Chain B, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|C Chain C, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
Length = 633
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 87/212 (41%), Gaps = 36/212 (16%)
Query: 310 SRKMRILSFLNDDISGAILDISFQRLVKREKAP-GTQGPLELWSDDFEGKGDFSQYRSRL 368
SR + ++ D A++++S+ ++ +K P G GPL ++D
Sbjct: 61 SRMTYVYYYIGLDFYKALVNVSYGHIITNQKQPKGVIGPL--IAED-------------- 104
Query: 369 LELVKFVASNKPLVAG----VKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSA 424
++ ++ +A+ P+V +K+ V + + + T +D +++ + SA
Sbjct: 105 IQEIEELATTHPIVKAEIEKLKLPPHVRVVCDPWMNGTDSKEDRMLIQCYMY----LASA 160
Query: 425 VFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTE--PPLVVALGHYLDALGPFLKYY 482
SN + + L S +FE L ++ + + + V D PF++Y+
Sbjct: 161 AHPESNHYS-----LPLKFSPVFECLTKKFVRMDYLPGGADETVTETQAWDEF-PFVEYH 214
Query: 483 PDAVGGVISKLFELLTSLPFVFKDPSTNSARH 514
PD G I L L+ P + PS N H
Sbjct: 215 PDLNGETIVPLKPLIVQQP---EGPSFNVDGH 243
>pdb|2IUC|A Chain A, Structure Of Alkaline Phosphatase From The Antarctic
Bacterium Tab5
Length = 375
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 34/123 (27%)
Query: 853 MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQS-------GHFYRVDVLSLKDLDAFA 905
+EE++ D+T S L A GLN ++ G+ + ++ L D + A
Sbjct: 150 LEEEIAMDMTE---SDLDFFAGGGLNYFTSRKDKKDVLAILKGNQFTINTTGLTDFSSIA 206
Query: 906 SNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFV 965
SN +GFLL D A+P ++ + +F SA LAI QF+
Sbjct: 207 SNRKMGFLL--ADEAMPTME--------------SGRGNFLSAATDLAI--------QFL 242
Query: 966 SKD 968
SKD
Sbjct: 243 SKD 245
>pdb|2W5X|A Chain A, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Glu
With Mg Bound In The M3 Site.
pdb|2W5X|B Chain B, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Glu
With Mg Bound In The M3 Site
Length = 375
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 34/123 (27%)
Query: 853 MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQS-------GHFYRVDVLSLKDLDAFA 905
+EE++ D+T S L A GLN ++ G+ + ++ +L D + A
Sbjct: 150 LEEEIAMDMTE---SDLDFFAGGGLNYFTKRKDKKDVLAILKGNQFTINTTALTDFSSIA 206
Query: 906 SNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFV 965
SN +GFLL D A+P ++ +F SA LAI QF+
Sbjct: 207 SNRKMGFLL--ADEAMPTMEKGR--------------GNFLSAATDLAI--------QFL 242
Query: 966 SKD 968
SKD
Sbjct: 243 SKD 245
>pdb|2W5V|A Chain A, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Asp
With Mg Bound In The M3 Site.
pdb|2W5V|B Chain B, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Asp
With Mg Bound In The M3 Site.
pdb|2W5W|A Chain A, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Asp
With Zn Bound In The M3 Site.
pdb|2W5W|B Chain B, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Asp
With Zn Bound In The M3 Site
Length = 375
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 34/123 (27%)
Query: 853 MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQS-------GHFYRVDVLSLKDLDAFA 905
+EE++ D+T S L A GLN ++ G+ + ++ +L D + A
Sbjct: 150 LEEEIAMDMTE---SDLDFFAGGGLNYFTKRKDKKDVLAILKGNQFTINTTALTDFSSIA 206
Query: 906 SNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFV 965
SN +GFLL D A+P ++ +F SA LAI QF+
Sbjct: 207 SNRKMGFLL--ADEAMPTMEKGR--------------GNFLSAATDLAI--------QFL 242
Query: 966 SKD 968
SKD
Sbjct: 243 SKD 245
>pdb|2IUC|B Chain B, Structure Of Alkaline Phosphatase From The Antarctic
Bacterium Tab5
Length = 375
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 34/123 (27%)
Query: 853 MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQS-------GHFYRVDVLSLKDLDAFA 905
+EE++ D+T S L A GLN + G+ + ++ L D + A
Sbjct: 150 LEEEIAMDMTE---SDLDFFAGGGLNYFTSRSDSKDVLAILKGNQFTINTTGLTDFSSIA 206
Query: 906 SNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFV 965
SN +GFLL D A+P ++ +F SA LAI QF+
Sbjct: 207 SNRKMGFLL--ADEAMPTME--------------KGRGNFLSAATDLAI--------QFL 242
Query: 966 SKD 968
SKD
Sbjct: 243 SKD 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,121,502
Number of Sequences: 62578
Number of extensions: 1118264
Number of successful extensions: 2652
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2644
Number of HSP's gapped (non-prelim): 11
length of query: 1096
length of database: 14,973,337
effective HSP length: 109
effective length of query: 987
effective length of database: 8,152,335
effective search space: 8046354645
effective search space used: 8046354645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)