Query 001344
Match_columns 1096
No_of_seqs 246 out of 523
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 22:22:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5101 CRM1 Importin beta-rel 100.0 3.8E-57 8.2E-62 502.6 38.4 537 10-598 111-676 (1053)
2 KOG2020 Nuclear transport rece 100.0 2.1E-50 4.6E-55 494.8 48.7 863 10-1057 109-1018(1041)
3 KOG2021 Nuclear mRNA export fa 100.0 3E-42 6.4E-47 392.2 60.3 504 8-593 101-641 (980)
4 KOG2023 Nuclear transport rece 100.0 2.3E-38 5E-43 356.6 25.9 474 10-634 103-594 (885)
5 PF08389 Xpo1: Exportin 1-like 99.8 7.9E-21 1.7E-25 191.4 14.1 147 10-170 1-148 (148)
6 KOG2022 Nuclear transport rece 99.8 3.7E-13 8E-18 158.9 63.6 506 10-594 99-642 (982)
7 KOG2171 Karyopherin (importin) 99.7 1.6E-12 3.5E-17 158.8 52.8 452 9-637 92-555 (1075)
8 KOG2081 Nuclear transport regu 99.7 3.6E-13 7.9E-18 153.6 39.9 473 12-591 77-556 (559)
9 KOG1241 Karyopherin (importin) 99.3 6.1E-10 1.3E-14 130.4 28.2 398 10-571 103-530 (859)
10 COG5215 KAP95 Karyopherin (imp 98.8 6.1E-06 1.3E-10 94.3 30.8 402 12-572 109-530 (858)
11 KOG1991 Nuclear transport rece 98.7 2.1E-05 4.5E-10 96.0 32.1 422 10-545 102-552 (1010)
12 KOG2274 Predicted importin 9 [ 98.1 0.013 2.8E-07 71.7 36.2 59 8-66 101-160 (1005)
13 KOG1992 Nuclear export recepto 98.0 0.077 1.7E-06 64.6 45.7 40 10-49 101-140 (960)
14 KOG1993 Nuclear transport rece 98.0 0.018 3.8E-07 69.5 34.3 271 315-617 362-650 (978)
15 KOG1410 Nuclear transport rece 97.7 0.22 4.8E-06 59.2 55.3 237 5-260 92-358 (1082)
16 KOG2171 Karyopherin (importin) 97.1 1.8 3.9E-05 55.4 35.3 185 362-577 362-555 (1075)
17 PF08506 Cse1: Cse1; InterPro 95.6 0.31 6.7E-06 56.6 16.0 167 322-497 183-355 (370)
18 KOG2023 Nuclear transport rece 95.2 4.2 9.1E-05 49.1 23.2 71 125-197 191-264 (885)
19 PF12717 Cnd1: non-SMC mitotic 94.3 0.77 1.7E-05 47.7 13.6 120 457-593 34-159 (178)
20 PTZ00429 beta-adaptin; Provisi 93.8 26 0.00056 44.6 35.5 161 363-567 383-544 (746)
21 PF01602 Adaptin_N: Adaptin N 92.6 32 0.00068 42.1 32.9 165 363-567 355-522 (526)
22 KOG1824 TATA-binding protein-i 92.3 41 0.00088 42.8 44.0 281 13-381 63-365 (1233)
23 PF12755 Vac14_Fab1_bd: Vacuol 91.1 0.79 1.7E-05 42.5 7.2 55 485-550 24-78 (97)
24 PF03378 CAS_CSE1: CAS/CSE pro 89.6 25 0.00054 42.0 19.9 78 483-571 21-101 (435)
25 PF08767 CRM1_C: CRM1 C termin 89.1 29 0.00063 39.6 19.4 133 919-1051 162-316 (319)
26 COG5656 SXM1 Importin, protein 86.4 97 0.0021 38.6 34.8 52 10-62 101-154 (970)
27 PF08767 CRM1_C: CRM1 C termin 85.5 8.4 0.00018 44.0 12.3 155 115-282 34-196 (319)
28 KOG1241 Karyopherin (importin) 80.8 1.6E+02 0.0035 36.9 39.0 207 362-591 515-730 (859)
29 KOG1059 Vesicle coat complex A 77.5 1.1E+02 0.0024 37.9 17.7 140 472-680 130-271 (877)
30 KOG0213 Splicing factor 3b, su 77.3 2E+02 0.0044 36.0 35.0 83 445-541 759-845 (1172)
31 PF10508 Proteasom_PSMB: Prote 76.9 1.9E+02 0.0041 35.4 33.0 135 458-617 300-442 (503)
32 COG5657 CSE1 CAS/CSE protein i 76.0 15 0.00032 46.4 10.3 77 16-101 104-181 (947)
33 KOG0212 Uncharacterized conser 71.9 1.7E+02 0.0038 35.4 17.0 206 406-636 12-242 (675)
34 KOG0915 Uncharacterized conser 67.8 2.9E+02 0.0063 37.6 19.2 164 362-549 1012-1181(1702)
35 PF05327 RRN3: RNA polymerase 63.5 1.8E+02 0.004 36.0 16.5 136 448-591 72-212 (563)
36 PF08506 Cse1: Cse1; InterPro 62.7 1.3E+02 0.0027 35.3 14.0 102 510-613 107-218 (370)
37 PF02985 HEAT: HEAT repeat; I 61.0 10 0.00022 26.9 2.9 27 149-175 1-29 (31)
38 COG5181 HSH155 U2 snRNP splice 57.6 4.5E+02 0.0097 32.4 27.6 172 445-642 564-755 (975)
39 PF14911 MMS22L_C: S-phase gen 56.5 3.8E+02 0.0083 31.3 16.9 101 947-1047 259-370 (373)
40 KOG2021 Nuclear mRNA export fa 56.2 1.4E+02 0.0031 37.2 12.9 131 444-591 639-783 (980)
41 PF11935 DUF3453: Domain of un 55.2 1E+02 0.0022 33.7 10.9 102 443-546 108-210 (239)
42 PF08623 TIP120: TATA-binding 53.9 59 0.0013 33.4 8.1 104 749-872 42-145 (169)
43 KOG2956 CLIP-associating prote 53.8 1.2E+02 0.0027 35.8 11.4 177 4-188 295-489 (516)
44 KOG2020 Nuclear transport rece 53.3 4.4E+02 0.0095 35.1 17.5 83 509-591 106-189 (1041)
45 PF13251 DUF4042: Domain of un 51.8 45 0.00098 34.7 7.1 152 13-178 2-177 (182)
46 COG5215 KAP95 Karyopherin (imp 49.7 5.7E+02 0.012 31.3 19.5 200 362-591 514-730 (858)
47 KOG0213 Splicing factor 3b, su 49.5 6.5E+02 0.014 31.8 35.5 315 125-530 611-956 (1172)
48 KOG0212 Uncharacterized conser 48.5 5.4E+02 0.012 31.4 15.7 231 19-281 109-365 (675)
49 COG5181 HSH155 U2 snRNP splice 45.3 6.8E+02 0.015 30.9 22.0 37 9-45 370-406 (975)
50 cd05167 PI4Kc_III_alpha Phosph 44.7 83 0.0018 35.7 8.4 69 984-1052 221-294 (311)
51 PF08167 RIX1: rRNA processing 43.6 3.7E+02 0.0081 27.4 15.2 136 381-546 20-161 (165)
52 PF01602 Adaptin_N: Adaptin N 43.0 6.9E+02 0.015 30.3 20.6 107 446-571 114-221 (526)
53 PF13513 HEAT_EZ: HEAT-like re 40.3 32 0.00069 27.7 3.2 51 462-526 1-55 (55)
54 PF13646 HEAT_2: HEAT repeats; 39.5 2.3E+02 0.0049 24.8 9.0 51 458-528 10-60 (88)
55 PF12348 CLASP_N: CLASP N term 38.1 5.2E+02 0.011 27.4 14.7 79 442-531 46-126 (228)
56 PF11229 DUF3028: Protein of u 37.9 2.8E+02 0.006 33.4 11.1 54 538-591 388-441 (589)
57 PF13513 HEAT_EZ: HEAT-like re 37.0 23 0.00049 28.6 1.8 38 514-551 2-39 (55)
58 PF10521 DUF2454: Protein of u 36.5 3.4E+02 0.0073 30.4 11.7 146 84-264 113-278 (282)
59 PF08064 UME: UME (NUC010) dom 35.9 2.6E+02 0.0057 26.3 9.0 70 471-549 35-105 (107)
60 PTZ00429 beta-adaptin; Provisi 32.5 1.2E+03 0.026 30.1 31.9 164 9-177 152-328 (746)
61 KOG1058 Vesicle coat complex C 30.0 1.3E+03 0.027 29.5 26.9 34 361-394 372-405 (948)
62 PF12460 MMS19_C: RNAPII trans 30.0 9.9E+02 0.021 28.3 23.4 130 136-281 254-395 (415)
63 KOG1062 Vesicle coat complex A 29.6 1.3E+03 0.028 29.6 29.5 94 458-567 476-579 (866)
64 cd00893 PI4Kc_III Phosphoinosi 28.3 2.5E+02 0.0053 31.7 8.7 68 985-1052 200-272 (289)
65 PLN03076 ARF guanine nucleotid 28.2 2E+03 0.043 31.2 19.8 57 11-67 1197-1257(1780)
66 smart00802 UME Domain in UVSB 28.1 4.1E+02 0.0088 25.1 8.8 67 472-547 36-103 (107)
67 PF00220 Hormone_4: Neurohypop 27.6 21 0.00045 18.2 0.0 7 804-810 2-8 (9)
68 PF12717 Cnd1: non-SMC mitotic 27.4 6.9E+02 0.015 25.6 11.5 138 906-1053 9-159 (178)
69 PF14664 RICTOR_N: Rapamycin-i 27.2 1.1E+03 0.023 27.7 16.6 59 222-281 212-270 (371)
70 cd05174 PI3Kc_IA_delta Phospho 26.5 1.3E+02 0.0028 35.0 6.1 73 983-1055 271-349 (361)
71 PF12755 Vac14_Fab1_bd: Vacuol 26.0 2.4E+02 0.0051 26.1 6.8 23 578-600 21-43 (97)
72 cd05166 PI3Kc_II Phosphoinosit 25.4 2.3E+02 0.005 32.9 8.0 69 984-1052 265-339 (353)
73 PF12348 CLASP_N: CLASP N term 25.3 7.8E+02 0.017 26.0 11.9 67 457-534 140-212 (228)
74 PF04510 DUF577: Family of unk 25.2 7.7E+02 0.017 25.5 11.5 124 447-588 4-134 (174)
75 cd00020 ARM Armadillo/beta-cat 25.0 4.3E+02 0.0094 24.1 8.8 52 123-174 64-119 (120)
76 COG5218 YCG1 Chromosome conden 22.4 1.5E+03 0.033 27.9 16.4 107 448-571 48-158 (885)
77 KOG1242 Protein containing ada 21.9 1.6E+03 0.034 27.8 14.5 182 362-570 230-443 (569)
78 KOG4653 Uncharacterized conser 21.7 1.8E+03 0.04 28.6 15.9 86 445-540 843-930 (982)
79 cd05168 PI4Kc_III_beta Phospho 21.2 3.6E+02 0.0077 30.5 8.3 69 984-1052 200-276 (293)
80 KOG1020 Sister chromatid cohes 21.0 2.4E+03 0.051 29.6 32.6 73 464-543 1188-1270(1692)
81 PF14222 MOR2-PAG1_N: Cell mor 20.8 4.9E+02 0.011 32.2 10.1 153 15-174 65-248 (552)
82 PF05918 API5: Apoptosis inhib 20.7 1.7E+02 0.0038 35.8 6.0 80 474-570 45-124 (556)
83 KOG2956 CLIP-associating prote 20.2 1.5E+03 0.034 27.1 13.7 30 513-542 462-492 (516)
84 KOG2759 Vacuolar H+-ATPase V1 20.0 1.3E+03 0.027 27.4 12.2 89 421-526 336-436 (442)
No 1
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=3.8e-57 Score=502.62 Aligned_cols=537 Identities=15% Similarity=0.188 Sum_probs=425.3
Q ss_pred hhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhcCChhHHHHHHHHHHhhhhhhcccccC-chHHHHHHHHHHHHhhH
Q 001344 10 EWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNED-LEGDRRRLLLRGLTQSL 88 (1096)
Q Consensus 10 ~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~~~~~~~~El~L~iL~~L~EDv~~~~ed-l~~~Rr~~ll~~L~~~~ 88 (1096)
..|+.||+..++|+|+|+|||++||+|+|+|++.++.+-..||++|.+|+.|+||||+|.++ ++..|++.++++|+.++
T Consensus 111 qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~s~~vCeNnmivLklLsEEvFdfSaeqmTq~k~~~LkNqm~~EF 190 (1053)
T COG5101 111 QKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQISMEVCENNMIVLKLLSEEVFDFSAEQMTQVKKRLLKNQMKIEF 190 (1053)
T ss_pred HHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccchHHHHhccHHHHHHhHHHHHhccHHHHHHHHHHHHHHHHhhhH
Confidence 67999999999999999999999999999999999999999999999999999999998876 89999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHH-HhhcCChhHhhHHH
Q 001344 89 PEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGC-GFLLSSPDFRLHAC 167 (1096)
Q Consensus 89 p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L-~~ll~~~~~R~~A~ 167 (1096)
|+||.+|.++||.. ...+++.|||+++.+|++|||+.+|+++++++++ ..+.+.|++|..++
T Consensus 191 ~qIF~lc~qiLE~~-----------------~~~SLi~ATLesllrfl~wiPl~yIfeTnIieLv~~~f~s~pd~r~~tl 253 (1053)
T COG5101 191 PQIFGLCKQILEYS-----------------RDESLIEATLESLLRFLEWIPLDYIFETNIIELVLEHFNSMPDTRVATL 253 (1053)
T ss_pred HHHHHHHHHHHHhc-----------------CChHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHhccCCchhHHHH
Confidence 99999999999963 1245999999999999999999999999999998 58889999999999
Q ss_pred HHHHHHcCCCCCCCCChH-------HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhc
Q 001344 168 EFFKLVSPRKGPADASAS-------EFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLH 240 (1096)
Q Consensus 168 ecL~~i~sr~~~~~~~~~-------~f~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~ 240 (1096)
+||++|++.++.|.+... +|+..+..+-...+-...+++. .-++.+..+..|+.+++.+++++-..++.
T Consensus 254 ~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e----~Y~~~~~neq~Fvq~LA~fL~s~~~~~~~ 329 (1053)
T COG5101 254 SCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYE----VYGGMDKNEQIFVQKLAQFLSSLYEVYIS 329 (1053)
T ss_pred HHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHH----HHcccChhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998865533311 2222221111000000001110 01345666778999999999999999998
Q ss_pred ccccccc--cHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhcc--ccccCCCCCcccCCCCC---CCCcchhhh
Q 001344 241 CIAREDT--ILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTK--VAHSTGDGSTVNNADSG---SGKVDSRKM 313 (1096)
Q Consensus 241 ~~~~~~~--~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~ 313 (1096)
.+++++. ++-.-..+++.+.+...-++++.|+++|+.+..+++++.+ ....|++.+....|+.. ..+.+..++
T Consensus 330 lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~~~~p 409 (1053)
T COG5101 330 LLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQDSTKP 409 (1053)
T ss_pred HhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchhcccc
Confidence 8876432 4445567888999999999999999999999999877754 23345554433322211 111111222
Q ss_pred hhhhcchhhhHHHHHHHHHHHhhcccCCC--CCCCCccccccccCChhhHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Q 001344 314 RILSFLNDDISGAILDISFQRLVKREKAP--GTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERV 391 (1096)
Q Consensus 314 ~~~~~~~~~il~~Ll~~~~~rm~~~e~~~--~~~~~~e~~~~Dfd~~~ef~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l 391 (1096)
...++|.+++++|+-+++++|++||++- ++++ +|..+ +|-.++|-.+++|.+++++-+++++.-.++..++...+
T Consensus 410 -LrkhiY~~ilsqLrlvlienMvrPEEVliVende-gEivR-efvketDtI~lYksmRevLvyLthL~v~Dte~~mi~Kl 486 (1053)
T COG5101 410 -LRKHIYIGILSQLRLVLIENMVRPEEVLIVENDE-GEIVR-EFVKETDTIELYKSMREVLVYLTHLIVDDTEKYMIGKL 486 (1053)
T ss_pred -hHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCC-cHHHH-HHhccccHhHHHHHHhhHHHHHhhhhhhhHHHHHHHHH
Confidence 2345678999999999999999999963 2222 45555 67677777899999999999999999999999999999
Q ss_pred HHHHhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCCCCc--hHHHHHH
Q 001344 392 MAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEP--PLVVALG 469 (1096)
Q Consensus 392 ~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dP--~l~s~~~ 469 (1096)
..++++. .|.|..++++|||+.+ ++|. + +++.| +++++.++..||.+|....++|+ .+.|.+|
T Consensus 487 arq~dg~---------EWsw~nlNtLcWAIGS--ISGa--m-sE~~E-krF~VnviKdLL~LcemKrgKdnKAVvASnIM 551 (1053)
T COG5101 487 ARQLDGK---------EWSWNNLNTLCWAIGS--ISGA--M-SEVNE-KRFFVNVIKDLLALCEMKRGKDNKAVVASNIM 551 (1053)
T ss_pred HHHhcCC---------ccchhhHhHHHHHHhc--ccch--h-hhHHH-HHHHHHHHHHHHHHHHHhhcCCcchhheccee
Confidence 9888764 7899999999999954 3322 1 11334 48999999999999998888888 5779999
Q ss_pred HHHHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcc--------cchhhHHHHH
Q 001344 470 HYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSD--------KSILPHMKDI 541 (1096)
Q Consensus 470 ~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~--------~~l~P~l~~i 541 (1096)
+++++|+||+++||.|+++|+.|+||+|++.. .-|+.|||++|+||++++| ..-.||+..|
T Consensus 552 yvvGQYpRFLkahw~FLkTVv~KLFEFMhE~H-----------EGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~I 620 (1053)
T COG5101 552 YVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDH-----------EGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYI 620 (1053)
T ss_pred eeeccchHHHHHHHHHHHHHHHHHHHHHhhhh-----------hhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHH
Confidence 99999999999999999999999999998422 2467799999999999964 4467998888
Q ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHhHHHHhhhchHhH
Q 001344 542 ADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGI-QQQQEVLAWLLEPLSQQWMQLEW 598 (1096)
Q Consensus 542 ~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~~~~~-~~q~~~l~~ll~P~~~~W~~~~~ 598 (1096)
+..++.. .|.|.+.++.++|||++.+++..+. ..+..++-.+|+-+++.|..-..
T Consensus 621 irnl~kt--T~dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~ 676 (1053)
T COG5101 621 IRNLPKT--TGDLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVI 676 (1053)
T ss_pred HHhhhhh--cccCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHH
Confidence 6666522 2679999999999999999985444 46888999999999999974433
No 2
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-50 Score=494.84 Aligned_cols=863 Identities=15% Similarity=0.154 Sum_probs=590.1
Q ss_pred hhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhcCChhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHHHH-HhhH
Q 001344 10 EWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGL-TQSL 88 (1096)
Q Consensus 10 ~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~~~~~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~~L-~~~~ 88 (1096)
..|+|+|++.++|+|+|||||+.||+|++++.+.++.|+.+||+++.||+.|+||||.|.+....+||..+++.+ +..+
T Consensus 109 ~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~s~~~~el~m~Il~lLsEdvf~~ss~~~~q~~~~il~~~~~~~f 188 (1041)
T KOG2020|consen 109 EKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKTSETVCELSMIILLLLSEEVFDFSSSELTQQKIIILKNLLENEF 188 (1041)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhcCcccchHHHHHHHHHHHHHhcccchHHHhhhHHHHHHHhhHHH
Confidence 799999999999999999999999999999999999999999999999999999999965444466777776665 4457
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHH-HhhcCChhHhhHHH
Q 001344 89 PEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGC-GFLLSSPDFRLHAC 167 (1096)
Q Consensus 89 p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L-~~ll~~~~~R~~A~ 167 (1096)
..|+.+|..+.++ .+.+++.++|.++++|++|||.++|++.+.++++ +.+++.+.+|..|+
T Consensus 189 ~~i~~l~~~~~~~------------------a~~~~~~atl~tl~~fl~wip~~~I~~tn~l~~~l~~~ln~~~~r~~al 250 (1041)
T KOG2020|consen 189 QQIFTLCSYIKEK------------------ANSELLSATLETLLRFLEWIPLGYIFETNILELLLNKFLNAPELRNNAL 250 (1041)
T ss_pred HHHHHHHHHHHhh------------------hhhHHHHHHHHHHHHHhhcccHHHHHHhhhHHHHHHhccchHHHHHHHH
Confidence 7888888776554 2334999999999999999999999998888877 69999999999999
Q ss_pred HHHHHHcCCCCCCCCCh--HHHHHHHHHHHHHHHHHHHHHhhhcC----CCCCCCChhhhHHHHHHHHHHHHhhhhhhcc
Q 001344 168 EFFKLVSPRKGPADASA--SEFESAMHDVFQILMKVSGEFLYRSG----TSAGAIDESEFEFAEYICESMVSLGTSNLHC 241 (1096)
Q Consensus 168 ecL~~i~sr~~~~~~~~--~~f~~~l~~i~~~~~~~~~~~~~~~~----~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~ 241 (1096)
+||.++++|++...++. +.|+..+.. .+.++.... .......|+ |.|.+++++++++|+..++..
T Consensus 251 ~CL~ei~s~~~~~~~~~~~~~~~~~~~~--------l~~i~~~l~~~~~~~~~~~~dq-~~fi~~l~~~l~~f~~~~~~l 321 (1041)
T KOG2020|consen 251 SCLTELLSRKRSIYERKTVPMFNLTIYQ--------LRSIPQDLDIPEVYSSLSDEDQ-DSFIEKLAQFLSLFFEQHIAL 321 (1041)
T ss_pred HHHHHHHhccccchhHHhHHHHHHHHHH--------HHHhhhhhchhhhhhcccHhHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997522222 233332222 111111111 112222333 799999999999999999998
Q ss_pred cccc----cccHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhh-cc-ccccCCCCCcccCCCC-CCCCcchhhhh
Q 001344 242 IARE----DTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSK-TK-VAHSTGDGSTVNNADS-GSGKVDSRKMR 314 (1096)
Q Consensus 242 ~~~~----~~~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~~~~~-~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 314 (1096)
++.+ +..+..++.+++.++.||+...+. |+++|+.++++.+.+ ++ ++.+.+ ||+. +-+..+.++.
T Consensus 322 le~~~~~~~~~~~~~~~li~i~~~~~se~~~~-~ld~W~~lv~~l~~~~~~ll~~s~~------~~~~~~~~ri~~rk~- 393 (1041)
T KOG2020|consen 322 LESSLSQRPVLLEALLELILISTIEPSEIFKI-CLDYWNKLVADLYYNKPPLLQLSTT------LPSISDYSRIDFRKS- 393 (1041)
T ss_pred HcCchhhhhHHHHHHHHHHHHhccCchhHHHH-HHHHHHHHHHhhhcccccccccccc------cccccchhccchHHH-
Confidence 8762 235667888888899999988888 999999999995543 33 222211 2221 1111222222
Q ss_pred hhhcchhhhHHHHHHHHHHHhhcccCCC--CCCCCccccccccCChhhHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 001344 315 ILSFLNDDISGAILDISFQRLVKREKAP--GTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVM 392 (1096)
Q Consensus 315 ~~~~~~~~il~~Ll~~~~~rm~~~e~~~--~~~~~~e~~~~Dfd~~~ef~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~ 392 (1096)
++..++.+++.+...+|++|+.+- +++. ++..+ |+-.+.+|..|++.+++.+.+.+.++-.++...+..++.
T Consensus 394 ----~y~~~~~~~r~l~l~~m~~Pe~vlive~~~-~~~vr-e~~~~~~~~~ly~~~~e~l~~~~~L~~~~t~~~~~~kl~ 467 (1041)
T KOG2020|consen 394 ----IYQEFLSKLRLLRLERMAKPEEVLIVENEQ-GEIVR-EFMKDHDFITLYPVLRETLVYLLHLDVVDTEKIMTEKLA 467 (1041)
T ss_pred ----HHHHHHHHHHHHHHHHhcCchheeEEechH-HHHHH-HhccCcchhhhhHHHHHHHHHHHHhhhhhhhhhhhHhHH
Confidence 345899999999999999999853 2211 22233 555577889999999999999999999999999999988
Q ss_pred HHHhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCCCCc--hHHHHHHH
Q 001344 393 AIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEP--PLVVALGH 470 (1096)
Q Consensus 393 ~~l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dP--~l~s~~~~ 470 (1096)
..+.+. .+.|++...+|||+.+..-+ . -.+.+ ...++.++.++++.+.....+|+ .+.+++++
T Consensus 468 ~~l~~~---------~~~~~~ln~l~~ai~sisg~----~-~e~~e-~k~~~~v~~d~l~l~E~~~~kdn~avi~~Ni~~ 532 (1041)
T KOG2020|consen 468 IQLDGD---------EWSLHNLNRLCWAIGSISGR----M-LEDME-KKFFVAVIRDLLNLCERKRGKDNKAVIASNIMY 532 (1041)
T ss_pred HHhhHH---------HHhhhhhhhHHHHHHHHHhh----h-HHHHH-HHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHH
Confidence 777653 88999999999999753211 1 01233 37788889999999998877775 58899999
Q ss_pred HHHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcc--------cchhhHHHHHH
Q 001344 471 YLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSD--------KSILPHMKDIA 542 (1096)
Q Consensus 471 ~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~--------~~l~P~l~~i~ 542 (1096)
.++++++|++.|+.+++++..|+|++|++.. +-++.+||++|++|..+.. ....||...+.
T Consensus 533 vv~q~p~Fl~~h~~~Lkt~~~~L~efmhe~h-----------~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~ 601 (1041)
T KOG2020|consen 533 VVGQYPRFLKAHWKFLKTVVHKLFEFMHETH-----------EGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELL 601 (1041)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHhhhh-----------HHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHh
Confidence 9999999999999999999999999998531 1266799999999999854 45678887775
Q ss_pred HHHHHHHHcccccHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHhHHHHhhhchHhHhhhhcCChHHHHHhccCCccchh
Q 001344 543 DTMAYLQREGRLLRGEHNLLGEAFLVMAS-AAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWS 621 (1096)
Q Consensus 543 ~~i~~l~~~~~L~~~e~~~L~Eal~~i~~-~~~~~~q~~~l~~ll~P~~~~W~~~~~~~~~l~~~~~f~~~~~~~~~~~~ 621 (1096)
..+.... +.+++.++..+|||++.++. ..+++.+.++.+..+.-...+|.+..+++ .-. .+++.+.+
T Consensus 602 ~~l~~i~--~~l~~~q~~~~~~al~~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~-~~~-----~~~l~~~~---- 669 (1041)
T KOG2020|consen 602 LNLTAIT--EDLQPQQRHTFYEALGLMVSAEIDPAKAERLQSKLMVLPNRAWINIILQA-RCN-----DEILKLLE---- 669 (1041)
T ss_pred hcccchh--cCchHHHHHHHHHHHHHHHHHhCCHhhHHHHHhcccccchhhhcchhhcC-ccc-----HHhhcchH----
Confidence 5554333 46999999999999996555 77888888888888888888888766553 100 00000000
Q ss_pred hHhHHHHHHHHHhhhccccccccccCCCCCCcccccchhhhhhhhhhhHHHHHHHHHhccCccccccCchHHHHHcccC-
Q 001344 622 LFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMS- 700 (1096)
Q Consensus 622 ~~~~~~~~~~~lkr~~~~~~~~~s~~~~~~~~~~~~p~~~~~~~iLp~ll~Llr~~h~l~~P~~~~~l~~~~~~~~~~~- 700 (1096)
..+.| + .+++..-+.++.+.+.+.|..+.-.+..++-+...+
T Consensus 670 --------------------------------~v~s~----~-~i~~~~~~~~~sl~~~f~~~~~~~~~d~~~l~~~~s~ 712 (1041)
T KOG2020|consen 670 --------------------------------TVKSL----L-NILKTNSRALTSLGSTFVPQLGKIYLDMLQLYIKQSE 712 (1041)
T ss_pred --------------------------------HHHHH----H-HHHHhHHHHHHhcCcccccccccccHHHHHHHHHhcc
Confidence 01111 1 155566666666666777666655544444444343
Q ss_pred HHHHhhhcCCCCCCCccccccccCCCCCCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHhhh-cCCcccccCCCchH-HH
Q 001344 701 DAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSA-TIGDPFFKSLDSGS-VV 778 (1096)
Q Consensus 701 ~~Er~~~lg~~~~~~sk~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~re~~y~ilg~~~-~l~~~Fy~~~~l~~-l~ 778 (1096)
..++++-.|.+ .+...+++++|..-.||.|+.+-|..+ +.+.+||....+++ +-
T Consensus 713 ~v~~~~~~~~~------------------------~~t~~~~v~~~~svk~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (1041)
T KOG2020|consen 713 LVSINVTAGGS------------------------EKTKTPFVKTLRSVKREILKLLETFISKSEQRDLYLLMLVPPLLD 768 (1041)
T ss_pred cccHHHhcccc------------------------cccccHHHHHHHHHHHHHHHHHHhccCcccchhHHHHhhhhHHHH
Confidence 44455432222 234456899999999999999999999 88999999988888 66
Q ss_pred HHHhcCCCCCccccHHHHHHH--HHHHhhccCChhhHHHHHHHhhHHHHHHHHHHHHhhhHHhhhhccCCchhHHHHHHH
Q 001344 779 VALMENIQSMEFRHIRQLVHS--VLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEK 856 (1096)
Q Consensus 779 ~al~~~~~~l~~~~lr~ll~~--~~~plv~~CP~~~~~~~l~plL~~lf~~~~~rL~~~W~~i~~~~~~~~~~~E~~ee~ 856 (1096)
..+|.....+|+.+.+.+++. +++| ...+++++-++..+.+... +. + +......+|+.|++
T Consensus 769 ~~~fd~~~nvPd~r~~~vl~l~~~iv~--------~Lg~~i~~~~~~i~~~v~~--c~----l---~m~~~d~qe~~e~~ 831 (1041)
T KOG2020|consen 769 AVLFDYLDNVPDYRENEVLSLNATIVP--------KLGEFIPAELPLINIAVLE--CT----L---EMINKDFQEYPEHR 831 (1041)
T ss_pred HHHHHHHccCcchhcchHHHhhhhhhh--------hhhhHhhhhccHHHHHHHh--hh----h---hccccccccchHHH
Confidence 788999999999999998852 2222 2222233333211111111 00 0 23456678999999
Q ss_pred HHHHHhHHHHHHHHHHhcCCCCCCCCCCCCCCCccc-------ccccccccchhhhhhhhHHHHhcCcCc-----hhHHH
Q 001344 857 LLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYR-------VDVLSLKDLDAFASNSMVGFLLKHKDL-----ALPAL 924 (1096)
Q Consensus 857 llr~LTr~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~~i-----~~~~l 924 (1096)
.-+.+++++..+.-..+..+.+ . .+.+.+.. +.|......+-.....+.+.+-..+.. ...+.
T Consensus 832 ~~f~~lle~l~~~~~~~~~~l~--~---~~~~~~~~si~~~f~h~~r~i~~~~l~~l~~l~k~~~~~~~~~~~~~~~~~~ 906 (1041)
T KOG2020|consen 832 LNFLLLLEALLLFCFPAFSELP--A---DQVKLVSDSIVWAFHHTMRNIAENGLNILLELLKNLAEMEKFANAFYQTYFL 906 (1041)
T ss_pred HHHHHHHHHHHHhhhHHHHcCC--c---hhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999988444443321 1 11111100 111111111111223344444433323 34556
Q ss_pred HHHHhhhcccchhhhHHHHHhHHHHHHHhhcccchhhhHHHHHHHHHHHHHHhccCchHhhHHHHHHHHHHHHHhcCCCC
Q 001344 925 QISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRD 1004 (1096)
Q Consensus 925 ~~~~~~l~w~Dt~~~~ka~~~~~~l~~~~~~~~~~~l~~~~~~~~~~a~l~~L~~~~~~~~~~~l~~L~~~iy~~l~~~~ 1004 (1096)
.+|.+++.|-+..+ +...||...+.+..... +-+... ++.++..++..|+ ++ +.|.-.||..++|.+
T Consensus 907 ~~l~~~~~~~~~~~--~~~~f~~~~L~~~~l~~---l~~~~~--~~~~l~~~~~v~~---n~---~~L~e~i~~~l~~~f 973 (1041)
T KOG2020|consen 907 SLLQKIIAVLTDTD--HKAGFTKQVLKLQFLFR---LVESAK--LHTPLLQGNVVHG---NQ---AFLREYIYGLLRPAF 973 (1041)
T ss_pred HHHHHHHHHHhccc--hhhcchHHHHHHHHHHH---HHHhhh--HHHhhccccccch---HH---HHHHHHHHHhhhhhc
Confidence 66666666543222 44688888887664321 211112 7777888988888 33 888999999999875
Q ss_pred chHHHHHHhCCCCCHHHHHHHHHHHhc-CCChHHHHHHHH-HHHHhhcCCchhhh
Q 001344 1005 PAPRQVLLSLPCITPQDLLAFEDALTK-TASPREQKQHMR-SLLVLGTGNNLKAL 1057 (1096)
Q Consensus 1005 ~~~~~vL~~lP~i~~~~l~~f~~~l~~-~~s~k~qr~~~k-~ll~~~~g~~l~~~ 1057 (1096)
+ +++...+.+|...+.. .+..-..|+.++ ......+|.+.+++
T Consensus 974 ~----------~~~~~~v~~~~~~~~~~~~~~~~~k~~~~d~~~~e~~~~~~~~l 1018 (1041)
T KOG2020|consen 974 P----------NLTDEQVRAFDIGLFDECKDVSPFKDHVRDVQIKEFGGQDTSDL 1018 (1041)
T ss_pred h----------hhchHHHHHHhHHHHHHhcccchhhcchhhHHHHHhcccchHHH
Confidence 4 4444667777666654 222222222222 33445567776664
No 3
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-42 Score=392.16 Aligned_cols=504 Identities=13% Similarity=0.144 Sum_probs=381.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhcCChhH--HHHHHHHHHhhhhhhccccc---Cch-HHHHHHHH
Q 001344 8 CEEWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQ--AELVSMMLRWLPEDITVHNE---DLE-GDRRRLLL 81 (1096)
Q Consensus 8 ~e~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~~~~~~~--~El~L~iL~~L~EDv~~~~e---dl~-~~Rr~~ll 81 (1096)
.+|.||+||++++++.++-.+||..|++|+.+|...-..|+.. .++.+++|..+..|+++ .+ +-+ ..|...++
T Consensus 101 ~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvllaIdsEiad-~dv~rT~eei~knnliK 179 (980)
T KOG2021|consen 101 KLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLLAIDSEIAD-QDVIRTKEEILKNNLIK 179 (980)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHhhhHhhh-ccccCChHHHHHHhhHH
Confidence 3599999999999999999999999999999999988777666 89999999999999986 33 223 44555667
Q ss_pred HHHHhh-HhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHHHhhcCCh
Q 001344 82 RGLTQS-LPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSP 160 (1096)
Q Consensus 82 ~~L~~~-~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~~~ 160 (1096)
.+|+++ +|+|..+||+++..+-. .....++..||+|+++|++||++++|+++.++++|+.+++..
T Consensus 180 DaMR~ndip~lv~~wyqil~~y~n--------------~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~ie 245 (980)
T KOG2021|consen 180 DAMRDNDIPKLVNVWYQILKLYEN--------------IVNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLNIE 245 (980)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhc--------------cCCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHhHH
Confidence 789876 99999999999986321 123558999999999999999999999888999999888899
Q ss_pred hHhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhc
Q 001344 161 DFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLH 240 (1096)
Q Consensus 161 ~~R~~A~ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~ 240 (1096)
++|.+||+|+.++++|||+|-++.++.+.+ +...+++..-.. ..+++.+|+++++++++++|.+.+.
T Consensus 246 elR~aac~cilaiVsKkMkP~dKL~lln~L---------~q~l~lfg~~s~----dq~~d~df~e~vskLitg~gvel~~ 312 (980)
T KOG2021|consen 246 ELRIAACNCILAIVSKKMKPMDKLALLNML---------NQTLELFGYHSA----DQMDDLDFWESVSKLITGFGVELTI 312 (980)
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHH---------HHHHHHHhhhcc----ccccCchHHHHHHHHHhhcceeeeh
Confidence 999999999999999999986666543321 111111111111 1234667999999999999999988
Q ss_pred cccccc------------ccHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhccccccCCCCCcccCCCCCCCCc
Q 001344 241 CIARED------------TILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKV 308 (1096)
Q Consensus 241 ~~~~~~------------~~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (1096)
+++.-. ..+-...++|++++.|..++++..+++||..++..+ .+.+. . .
T Consensus 313 i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~L-Kkl~~---l-----------s---- 373 (980)
T KOG2021|consen 313 IISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFL-KKLKA---L-----------S---- 373 (980)
T ss_pred hHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH-hhccc---c-----------c----
Confidence 775421 123346789999999999999999999999988752 12110 0 0
Q ss_pred chhhhhhhhcchhhhHHHHHHHHHHHhhcccCCCCCCCCccccccc-c--CChhhHHHHHHHHHHHHHHHHccCchHHHH
Q 001344 309 DSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDD-F--EGKGDFSQYRSRLLELVKFVASNKPLVAGV 385 (1096)
Q Consensus 309 ~~~~~~~~~~~~~~il~~Ll~~~~~rm~~~e~~~~~~~~~e~~~~D-f--d~~~ef~~~Rk~~~~ilr~i~~~~P~~~~~ 385 (1096)
.++ . ..+..++..++++|.|++... ++++ . |+++.|.+|||+++-.++.++.++|..++.
T Consensus 374 --~~q--k-----~~l~~illai~kqicydemy~--------nddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~ 436 (980)
T KOG2021|consen 374 --SPQ--K-----VPLHKILLAIFKQICYDEMYF--------NDDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLN 436 (980)
T ss_pred --chh--h-----ccHHHHHHHHHHHHhccHHhh--------cccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 001 1 346677888899999876532 2223 1 222346999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 001344 386 KVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLV 465 (1096)
Q Consensus 386 ~l~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dP~l~ 465 (1096)
.+.+.+.+.+.++ +...|-..|.+...+....++.......++++|..+ .+++.+++-.+++......-++
T Consensus 437 ~Ir~slS~al~ns-----~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~----~~vl~~~~~ll~tsqv~~h~h~ 507 (980)
T KOG2021|consen 437 NIRQSLSAALMNS-----KEESWQEVELAIYLLYNLGECLKNNYFGLNSGDIST----SQVLFLNELLLMTSQVLAHDHE 507 (980)
T ss_pred HHHHHHHHHHhcC-----CcchHHHHHHHHHHHHHHhhccccccccccCccccH----HHHHHHHHHHHHHcccccCCch
Confidence 9999998887654 223488899988888888776555443444444421 1345566666666655555445
Q ss_pred HHHH---HHHHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Q 001344 466 VALG---HYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIA 542 (1096)
Q Consensus 466 s~~~---~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l~P~l~~i~ 542 (1096)
.+++ ..+++|-.|+...++..|-||+.+ |. |.|.++ .+.+||+||+|+|-|+.|...+.+.||++.|+
T Consensus 508 lVqLlfmE~ivRY~kff~~esq~ip~vL~aF---ld--~rglhn----~ne~Vr~RawYLF~RfVKlLkkqlvpfie~il 578 (980)
T KOG2021|consen 508 LVQLLFMELIVRYNKFFSTESQKIPLVLNAF---LD--SRGLHN----KNENVRLRAWYLFTRFVKLLKKQLVPFIEEIL 578 (980)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhHHHHHHH---cc--chhccc----cccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 445555557788899999999877 43 344544 45589999999999999999999999999999
Q ss_pred HHHHHHHHc---------c-cccHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHhHHHHhhh
Q 001344 543 DTMAYLQRE---------G-RLLRGEHNLLGEAFLVMAS--AAGIQQQQEVLAWLLEPLSQQW 593 (1096)
Q Consensus 543 ~~i~~l~~~---------~-~L~~~e~~~L~Eal~~i~~--~~~~~~q~~~l~~ll~P~~~~W 593 (1096)
+.+++++.. . ...-..+.++||++|+++. ..+.|+|..+...++.|+...-
T Consensus 579 n~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~ 641 (980)
T KOG2021|consen 579 NKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQ 641 (980)
T ss_pred HHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHH
Confidence 999999921 1 2445567899999999975 7788999999999999997643
No 4
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-38 Score=356.61 Aligned_cols=474 Identities=17% Similarity=0.214 Sum_probs=354.3
Q ss_pred hhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhh-cCChhHHHHHHHHHHhhhhhhcccccC-chHHHHHHHHHHHHhh
Q 001344 10 EWALKSQTAALVAEIVRREGINLWQELFPSLVSLS-SKGPIQAELVSMMLRWLPEDITVHNED-LEGDRRRLLLRGLTQS 87 (1096)
Q Consensus 10 ~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~-~~~~~~~El~L~iL~~L~EDv~~~~ed-l~~~Rr~~ll~~L~~~ 87 (1096)
++.||+..+.+++.|+.+++-++||+++|.|+++. +.+.+++|.++..|.+++||...++|. .. . ++|+..
T Consensus 103 ~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~-~------rpl~~m 175 (885)
T KOG2023|consen 103 SPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVL-T------RPLNIM 175 (885)
T ss_pred hHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcc-c------CchHHh
Confidence 34899999999999999999999999999999988 555799999999999999999976653 22 2 366666
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHHHhhcCChhHhhHHH
Q 001344 88 LPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHAC 167 (1096)
Q Consensus 88 ~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~~~~~R~~A~ 167 (1096)
+|+.+.|+ -.++|++|.+|+
T Consensus 176 ipkfl~f~------------------------------------------------------------~h~spkiRs~A~ 195 (885)
T KOG2023|consen 176 IPKFLQFF------------------------------------------------------------KHPSPKIRSHAV 195 (885)
T ss_pred HHHHHHHH------------------------------------------------------------hCCChhHHHHHH
Confidence 77664332 224589999999
Q ss_pred HHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcccccccc
Q 001344 168 EFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDT 247 (1096)
Q Consensus 168 ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~~~~~~~ 247 (1096)
.|+++++--. ...-..+.|.+++.+|.- + .+++.+..|.+|..++-|.......+. +
T Consensus 196 ~cvNq~i~~~--~qal~~~iD~Fle~lFal----a--------------nD~~~eVRk~vC~alv~Llevr~dkl~---p 252 (885)
T KOG2023|consen 196 GCVNQFIIIQ--TQALYVHIDKFLEILFAL----A--------------NDEDPEVRKNVCRALVFLLEVRPDKLV---P 252 (885)
T ss_pred hhhhheeecC--cHHHHHHHHHHHHHHHHH----c--------------cCCCHHHHHHHHHHHHHHHHhcHHhcc---c
Confidence 9999987655 222233557788888754 2 223457899999999999887777664 5
Q ss_pred cHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhccccccCCCCCcc-----cCCCC------CCCCcchhhhhhh
Q 001344 248 ILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTV-----NNADS------GSGKVDSRKMRIL 316 (1096)
Q Consensus 248 ~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~~~~~~~~~~~~~~~~~~-----~~~~~------~~~~~~~~~~~~~ 316 (1096)
++....++||.-|+.++..|+.++++||.++...-+.+.-+.++.++++++ .|.+. +..+++.-+++.
T Consensus 253 hl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDre- 331 (885)
T KOG2023|consen 253 HLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDRE- 331 (885)
T ss_pred chHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchh-
Confidence 889999999999999999999999999999887743332233333333333 24331 111111111111
Q ss_pred hcchhhhHHHHHHHHHHHhhcccCCCCCCCCccccccccCChhhH--HHHHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Q 001344 317 SFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDF--SQYRSRLLELVKFVASNKPLVAGVKVSERVMAI 394 (1096)
Q Consensus 317 ~~~~~~il~~Ll~~~~~rm~~~e~~~~~~~~~e~~~~Dfd~~~ef--~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~ 394 (1096)
+||.|+.. ..|...-++.. +++ ++ .++|+|||+-| ||+|||....++.++.+.++..++++.-.+...
T Consensus 332 ----eDIkPRfh---ksk~~~~~~~~-~~e-Dd-ddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~ 401 (885)
T KOG2023|consen 332 ----EDIKPRFH---KSKEHGNGEDA-DDE-DD-DDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEH 401 (885)
T ss_pred ----hhccchhh---hchhccCcccc-ccc-cc-cccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 25555532 12221111100 000 11 12223333335 999999999999999999999999998888776
Q ss_pred HhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 001344 395 INSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDA 474 (1096)
Q Consensus 395 l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~ 474 (1096)
+. ++.|...||..++++|+.+||+++..+| ++.+++.+.++| +.+.|++|+++||++++
T Consensus 402 L~--------~~~W~vrEagvLAlGAIAEGcM~g~~p~-------LpeLip~l~~~L------~DKkplVRsITCWTLsR 460 (885)
T KOG2023|consen 402 LS--------SEEWKVREAGVLALGAIAEGCMQGFVPH-------LPELIPFLLSLL------DDKKPLVRSITCWTLSR 460 (885)
T ss_pred cC--------cchhhhhhhhHHHHHHHHHHHhhhcccc-------hHHHHHHHHHHh------ccCccceeeeeeeeHhh
Confidence 64 4579999999999999999999998776 577777777775 89999999999999999
Q ss_pred hhhhhhcC--CCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHcc
Q 001344 475 LGPFLKYY--PDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREG 552 (1096)
Q Consensus 475 l~~fl~~~--~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~~ 552 (1096)
|++|+... .+++.+||+.++..+ .|.+|+||++||++|..+.+.+...+.||++.|++++...+.
T Consensus 461 ys~wv~~~~~~~~f~pvL~~ll~~l-----------lD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~-- 527 (885)
T KOG2023|consen 461 YSKWVVQDSRDEYFKPVLEGLLRRL-----------LDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFG-- 527 (885)
T ss_pred hhhhHhcCChHhhhHHHHHHHHHHH-----------hcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH--
Confidence 99988653 478899999886655 347899999999999999999999999999999999987776
Q ss_pred cccHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHhHHHHhhhchHhHhhhhcCChHHHHHhccCCccchhhHhHHHHHHH
Q 001344 553 RLLRGEHNLLGEAFLVMASAAGIQ-QQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFER 631 (1096)
Q Consensus 553 ~L~~~e~~~L~Eal~~i~~~~~~~-~q~~~l~~ll~P~~~~W~~~~~~~~~l~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 631 (1096)
++..++..+||+|++++++.+|.. .+.++++.||+|+.++|.. +++ ++..-|-+..|++.+..
T Consensus 528 kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~-------lsd---------~DKdLfPLLEClSsia~ 591 (885)
T KOG2023|consen 528 KYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWEL-------LSD---------SDKDLFPLLECLSSIAS 591 (885)
T ss_pred HHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHh-------cCc---------ccchHHHHHHHHHHHHH
Confidence 488888889999999999977776 6899999999999999962 232 22345556666666666
Q ss_pred HHh
Q 001344 632 ALK 634 (1096)
Q Consensus 632 ~lk 634 (1096)
+|.
T Consensus 592 AL~ 594 (885)
T KOG2023|consen 592 ALG 594 (885)
T ss_pred HHh
Confidence 554
No 5
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.85 E-value=7.9e-21 Score=191.44 Aligned_cols=147 Identities=29% Similarity=0.471 Sum_probs=133.0
Q ss_pred hhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhcCChhHHHHHHHHHHhhhhhhccc-ccCchHHHHHHHHHHHHhhH
Q 001344 10 EWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVH-NEDLEGDRRRLLLRGLTQSL 88 (1096)
Q Consensus 10 ~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~~~~~~~~El~L~iL~~L~EDv~~~-~edl~~~Rr~~ll~~L~~~~ 88 (1096)
|+||++|++.++++|++|+||++||+|+++++++.+.++.++++++.+|+.++||+..+ ..++...||+++.+.+...+
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~ 80 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS 80 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999964 34578999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHHHhhcCChhHhhHHHH
Q 001344 89 PEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACE 168 (1096)
Q Consensus 89 p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~~~~~R~~A~e 168 (1096)
|.|++++++.++..... .+..++.++|+|+++|+.|+|++++.++++++.++.+++++++|..|+|
T Consensus 81 ~~i~~~l~~~l~~~~~~--------------~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~ 146 (148)
T PF08389_consen 81 PDILEILSQILSQSSSE--------------ANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPELREAAAE 146 (148)
T ss_dssp HHHHHHHHHHHHHHCHC--------------CHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHHhhccc--------------cHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999874310 1356899999999999999999999999999999988899999999999
Q ss_pred HH
Q 001344 169 FF 170 (1096)
Q Consensus 169 cL 170 (1096)
||
T Consensus 147 cl 148 (148)
T PF08389_consen 147 CL 148 (148)
T ss_dssp HH
T ss_pred hC
Confidence 97
No 6
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=3.7e-13 Score=158.95 Aligned_cols=506 Identities=15% Similarity=0.155 Sum_probs=321.7
Q ss_pred hhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhcC--C-----hhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHH
Q 001344 10 EWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSK--G-----PIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLR 82 (1096)
Q Consensus 10 ~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~~~--~-----~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~ 82 (1096)
+.-+-||+.--++..+-.-=|+.||+-+.+++.+-.. + ...|+..+.+|..++|+-- .-.++..||..++.
T Consensus 99 ~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~e~q--~~~l~~t~~~~l~~ 176 (982)
T KOG2022|consen 99 PKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFMPAEFQ--HVTLPLTRRSVLRG 176 (982)
T ss_pred chhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhccCcHhhh--hccchhHHHHHHHH
Confidence 6677778777777777777789999999998876532 2 3567778888777776543 23577888888888
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHHHhhcC--Ch
Q 001344 83 GLTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLS--SP 160 (1096)
Q Consensus 83 ~L~~~~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~--~~ 160 (1096)
.|......+++.+-.+++.... .+. +-........+++|+..++.-+......=..+++.+.-.+. ..
T Consensus 177 eLak~~~~v~~l~e~vlr~~~n---------~t~-s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~~i~~~ll~~l~~s~~ 246 (982)
T KOG2022|consen 177 ELAKFSENVISLLEVVLRGGSN---------STS-SLINLIFKQAAVDCVEQWIRYISLTGMDCDQITQVLLDVLGQSTE 246 (982)
T ss_pred HHHHHHHHHhHHHHHHHhcccc---------ccH-HHHHHHhhhHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhhcc
Confidence 8888877777754444443210 011 11112356678888666655444442211113333321111 01
Q ss_pred hHhhHHHHHH------------HHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhh--hcCCCCCCCChhhhHHHHH
Q 001344 161 DFRLHACEFF------------KLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLY--RSGTSAGAIDESEFEFAEY 226 (1096)
Q Consensus 161 ~~R~~A~ecL------------~~i~sr~~~~~~~~~~f~~~l~~i~~~~~~~~~~~~~--~~~~~~~~~dE~~y~f~k~ 226 (1096)
..-.+|-+|+ ...+.--.++ ....|..-+..+.......++..-. +...+++...|..+.|.
T Consensus 247 ~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~--d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~e~i~~~~-- 322 (982)
T KOG2022|consen 247 GSYEAAEKCMTIFGNVLADDTLLASVNDIIQP--DCEFYRNTITLLISICLGILQEVSGKIQEEENADASEEEIVTFL-- 322 (982)
T ss_pred ccccchhhhcccchhhhccchHHHHHHHhcCh--HHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHH--
Confidence 1122222333 2222211111 0111111111111111111111110 11122222334444444
Q ss_pred HHHHHHHhhhhh----hccccc--ccccHHHHHHHHHHhhccchh-----HHHHHHHHHHHHHHHHhhhh-ccccccCCC
Q 001344 227 ICESMVSLGTSN----LHCIAR--EDTILSMYLQQMLGYFQHFKI-----ALHFQSLLFWLALMRDLMSK-TKVAHSTGD 294 (1096)
Q Consensus 227 l~e~L~~lg~~~----~~~~~~--~~~~l~~~L~~lL~~t~hpsl-----~vs~~~l~~W~~lL~~~~~~-~~~~~~~~~ 294 (1096)
...++++..+ ++++.. ..+.+..+++.++..|..|.. .+|..++.||.++-.....- .+
T Consensus 323 --~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e------- 393 (982)
T KOG2022|consen 323 --AITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINE------- 393 (982)
T ss_pred --HHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhc-------
Confidence 4444554443 334321 223566788888888988874 47899999999987763211 00
Q ss_pred CCcccCCCCCCCCcchhhhhhhhcch-hhhHHHHHHHHHHHhhcccCCCCCCCCccccccccCChhhHHHHHHHHHHHHH
Q 001344 295 GSTVNNADSGSGKVDSRKMRILSFLN-DDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVK 373 (1096)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~Ll~~~~~rm~~~e~~~~~~~~~e~~~~Dfd~~~ef~~~Rk~~~~ilr 373 (1096)
....| ..++ ..|.-+|.++...|+..|.+ ..+..-.-|+.++|..||+...|++-
T Consensus 394 -------------~~~~~----~~i~~~qIy~qlvei~l~K~~~Ps~-------e~~~~W~S~s~e~F~~YR~diSD~~~ 449 (982)
T KOG2022|consen 394 -------------TQQIK----KQILSQQIYAQLVEILLKKLALPSK-------EIWLSWSSDSREQFESYRKDISDLLM 449 (982)
T ss_pred -------------cCCcc----hhHHHHHHHHHHHHHHHHHhcCCCH-------HHhccCCcchHHHHHHHHHHHHHHHH
Confidence 00001 1111 26778888888889888653 12223355667789999999999999
Q ss_pred HHHccCchHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHH
Q 001344 374 FVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQ 453 (1096)
Q Consensus 374 ~i~~~~P~~~~~~l~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ 453 (1096)
+.-++.-+..++.+.+.+.+.+++..+ ++..|..-|++..-..+|....-. .+. ..+..+++.
T Consensus 450 ~~Y~ilgd~ll~~L~~~l~q~~aa~d~---~p~s~~~tEaci~~~~sva~~~~~-------t~~-------~~i~rl~~~ 512 (982)
T KOG2022|consen 450 SSYSILGDGLLDFLIDTLEQALAAGDE---DPDSLNRTEACIFQFQSVAEYLGE-------TES-------TWIPRLFET 512 (982)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhccCC---CchHHHHHHHHHHHHHHHHhhcCc-------chh-------HHHHHHHHh
Confidence 999988888889999999888876522 222366777776666666552111 111 225667777
Q ss_pred HHhcCCC--CchHHHHHHHHHHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcc
Q 001344 454 LLSLKWT--EPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSD 531 (1096)
Q Consensus 454 ll~~~~~--dP~l~s~~~~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~ 531 (1096)
+-+.+.+ .|-+.+-....++.++-|++.||.++.++|+.+|..++. + +.-.+|.+.+-++|+.++
T Consensus 513 ~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~-s------------k~s~q~i~tl~tlC~~C~ 579 (982)
T KOG2022|consen 513 SASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHN-S------------KESEQAISTLKTLCETCP 579 (982)
T ss_pred ccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcC-c------------hHHHHHHHHHHHHHHhhh
Confidence 7776666 777888888999999999999999999999999998851 0 223477888999999999
Q ss_pred cchhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHhhhc
Q 001344 532 KSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWM 594 (1096)
Q Consensus 532 ~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~~~~~~~q~~~l~~ll~P~~~~W~ 594 (1096)
..+.||.+++.......+.++...+..+..++.++|-+.+...++.+..++-.|+.|+.++-.
T Consensus 580 ~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle 642 (982)
T KOG2022|consen 580 ESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLE 642 (982)
T ss_pred hhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998899999999999999999966699999999999999998653
No 7
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.6e-12 Score=158.81 Aligned_cols=452 Identities=16% Similarity=0.177 Sum_probs=262.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhh-cCChhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHHHHHhh
Q 001344 9 EEWALKSQTAALVAEIVRREGINLWQELFPSLVSLS-SKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQS 87 (1096)
Q Consensus 9 e~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~-~~~~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~~L~~~ 87 (1096)
...-+|+|++++++||++-+.|..||++++-|.+.. +.++..+|.+++||..+.|.+..-. ...
T Consensus 92 ~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~---------------~~~ 156 (1075)
T KOG2171|consen 92 TEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL---------------QPH 156 (1075)
T ss_pred cchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc---------------chh
Confidence 467899999999999999999999999999999977 5678999999999999998776411 111
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHHHhhcCChhHhhHHH
Q 001344 88 LPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHAC 167 (1096)
Q Consensus 88 ~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~~~~~R~~A~ 167 (1096)
++.+...+.+-+.. ++..+|..|+
T Consensus 157 ~~~l~~lf~q~~~d--------------------------------------------------------~s~~vr~~a~ 180 (1075)
T KOG2171|consen 157 LDDLLRLFSQTMTD--------------------------------------------------------PSSPVRVAAV 180 (1075)
T ss_pred HHHHHHHHHHhccC--------------------------------------------------------CcchHHHHHH
Confidence 22222222111110 1112555555
Q ss_pred HHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcccccccc
Q 001344 168 EFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDT 247 (1096)
Q Consensus 168 ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~~~~~~~ 247 (1096)
.++..++--.-........|...+-.++. .++.+. + .+-++.-..-++.+.+++-+.+ +++ .+
T Consensus 181 rA~~a~~~~~~~~~~~~~~~~~llP~~l~----vl~~~i-----~-~~d~~~a~~~l~~l~El~e~~p----k~l---~~ 243 (1075)
T KOG2171|consen 181 RALGAFAEYLENNKSEVDKFRDLLPSLLN----VLQEVI-----Q-DGDDDAAKSALEALIELLESEP----KLL---RP 243 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhHHHHH----HhHhhh-----h-ccchHHHHHHHHHHHHHHhhch----HHH---HH
Confidence 55544443220000111233333333332 233211 0 1111111345555555544333 222 13
Q ss_pred cHHHHHHHHHHhhccchh--HHHHHHHHHHHHHHHHhhhhccccccCCCCCcccCCCCCCCCcchhhhhhhhcchhhhHH
Q 001344 248 ILSMYLQQMLGYFQHFKI--ALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISG 325 (1096)
Q Consensus 248 ~l~~~L~~lL~~t~hpsl--~vs~~~l~~W~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 325 (1096)
.+...++++|.+..+.++ .+...+++|-+++.+.--.+.+ . ... +-+.+++
T Consensus 244 ~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k-------------------------~-~~~-~~~~lv~ 296 (1075)
T KOG2171|consen 244 HLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCK-------------------------K-LAL-LGHTLVP 296 (1075)
T ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhh-------------------------h-chh-hhccHHH
Confidence 566777888888887765 4778899998888887100000 0 000 1123444
Q ss_pred HHHHHHHHHhhcccCCCCCCCCccccccccCChhhH-HHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHhhcccCCCC
Q 001344 326 AILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDF-SQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMP 404 (1096)
Q Consensus 326 ~Ll~~~~~rm~~~e~~~~~~~~~e~~~~Dfd~~~ef-~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~l~~~~~~~~~ 404 (1096)
.++. |.-+++.+ .++.+.|..+++|+ .++|--.+.+=|..+++-|...++-+.+.+...+.+
T Consensus 297 ~~l~-----~mte~~~D-----~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S------- 359 (1075)
T KOG2171|consen 297 VLLA-----MMTEEEDD-----DEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQS------- 359 (1075)
T ss_pred HHHH-----hcCCcccc-----hhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcC-------
Confidence 4432 22222211 12223233333333 677777666667777788899999999999888754
Q ss_pred hhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHH-hcCCCCchHHHHHHHHHHhhhh-----h
Q 001344 405 AQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLL-SLKWTEPPLVVALGHYLDALGP-----F 478 (1096)
Q Consensus 405 s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll-~~~~~dP~l~s~~~~~l~~l~~-----f 478 (1096)
+.|-+..|..+.+.++..||.+.. .+.+..++...+ -+++++|.+|--.|-.+++++. +
T Consensus 360 -~~w~~R~AaL~Als~i~EGc~~~m--------------~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 360 -TEWKERHAALLALSVIAEGCSDVM--------------IGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred -CCHHHHHHHHHHHHHHHcccHHHH--------------HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence 468899999999999999988843 223445555555 3599999999999998998876 3
Q ss_pred hhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHH-HHHHHHHcccccH
Q 001344 479 LKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKS-ILPHMKDIAD-TMAYLQREGRLLR 556 (1096)
Q Consensus 479 l~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~-l~P~l~~i~~-~i~~l~~~~~L~~ 556 (1096)
-|++.+.+++.|-.+ +. +..+-+|+.+||.+++.+...+++. +.||++.+.+ .+..+..++.-.
T Consensus 425 qk~~~e~l~~aL~~~---ld----------~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~- 490 (1075)
T KOG2171|consen 425 QKKHHERLPPALIAL---LD----------STQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPY- 490 (1075)
T ss_pred HHHHHHhccHHHHHH---hc----------ccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchh-
Confidence 355556555544333 32 1133478999999999999997755 6699999987 565555554322
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHhhhchHhHhhhhcCChHHHHHhccCCccchhhHhHHHHHHHHHhhh
Q 001344 557 GEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRS 636 (1096)
Q Consensus 557 ~e~~~L~Eal~~i~~~~~~~~q~~~l~~ll~P~~~~W~~~~~~~~~l~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lkr~ 636 (1096)
-+...-.|++.++... .+.=..++..+|+-+.....+..-.. ....|.....|++.++.++.+.
T Consensus 491 -v~e~vvtaIasvA~AA-~~~F~pY~d~~Mp~L~~~L~n~~~~d--------------~r~LrgktmEcisli~~AVGke 554 (1075)
T KOG2171|consen 491 -VQEQAVTAIASVADAA-QEKFIPYFDRLMPLLKNFLQNADDKD--------------LRELRGKTMECLSLIARAVGKE 554 (1075)
T ss_pred -HHHHHHHHHHHHHHHH-hhhhHhHHHHHHHHHHHHHhCCCchh--------------hHHHHhhHHHHHHHHHHHhhhh
Confidence 2222233444444311 11124566677776665433211000 0113555566677777666665
Q ss_pred c
Q 001344 637 G 637 (1096)
Q Consensus 637 ~ 637 (1096)
.
T Consensus 555 ~ 555 (1075)
T KOG2171|consen 555 K 555 (1075)
T ss_pred h
Confidence 3
No 8
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=3.6e-13 Score=153.59 Aligned_cols=473 Identities=16% Similarity=0.160 Sum_probs=330.8
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhcCChhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHHHHHhhHhHH
Q 001344 12 ALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEI 91 (1096)
Q Consensus 12 ~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~~~~~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~~L~~~~p~I 91 (1096)
-|+..++--++.+.-+- ..|.+-+.++++..+..+...=..+.+|+-++||+....-.....||.++...+....+.+
T Consensus 77 ~i~tQL~vavA~Lal~~--~~W~n~I~e~v~~~~~~~~~~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~~~ 154 (559)
T KOG2081|consen 77 VIRTQLAVAVAALALHM--PEWVNPIFELVRALSNKHPAVPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVSKV 154 (559)
T ss_pred hHHHHHHHHHHHHHHHh--HhhcchHHHHHHHhhcCCccHHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHHHH
Confidence 56677777777666552 2788888888887655544456789999999999998443466889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccc--cCCcchhccc-CcHHHHHhhcCChhHhhHHHH
Q 001344 92 LPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAE--WAPLPDLAKY-GIIHGCGFLLSSPDFRLHACE 168 (1096)
Q Consensus 92 ~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~--Wip~~~i~~~-~ll~~L~~ll~~~~~R~~A~e 168 (1096)
+.++...+|+.- .+ .......+|+|++.+.. =.|++++.+. .++.+.+..+++.++-..|.+
T Consensus 155 L~~l~~lLe~~~-----------l~----~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~ 219 (559)
T KOG2081|consen 155 LVFLSDLLERSD-----------LK----SSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDELHEEATE 219 (559)
T ss_pred HHHHHHHHhhcC-----------CC----hhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccchhhHHHHH
Confidence 999999988631 11 03367788888666655 5677777666 588888878889999999999
Q ss_pred HHHHHcCCCCCCCCChHHHHHHH-H--HHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcccccc
Q 001344 169 FFKLVSPRKGPADASASEFESAM-H--DVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIARE 245 (1096)
Q Consensus 169 cL~~i~sr~~~~~~~~~~f~~~l-~--~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~~~~~ 245 (1096)
|+.++..+....++..+ |...+ . .++.+..+.+. ..++++=.+.+|..++.+|....-.+..+
T Consensus 220 cic~ll~~~~~~~~~~~-~~~~l~~~v~~L~~~~~~a~-------------~~~d~d~~~a~~RIFtel~eaf~~~i~~n 285 (559)
T KOG2081|consen 220 CICALLYCSLDRSEGLP-LAAILFIGVIILETAFHLAM-------------AGEDLDKNEAICRIFTELGEAFVVLISTN 285 (559)
T ss_pred HHHHHHHHhhhhhccCc-hhHHHhccccccchHHHHhh-------------cccCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999876532211101 22110 0 11111111111 12233456778999999987776555544
Q ss_pred cccHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhccccccCCCCCcccCCCCCCCCcchhhhhhhhcchhhhHH
Q 001344 246 DTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISG 325 (1096)
Q Consensus 246 ~~~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 325 (1096)
++..-..+..+|..+.|+..++...++.||..+-+.++.... .+- .-++.++.-
T Consensus 286 p~~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~----------------------~~~----~~~frpy~~ 339 (559)
T KOG2081|consen 286 PEEFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDD----------------------DEA----LGIFRPYFL 339 (559)
T ss_pred CCcchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhcccc----------------------HHH----HHHhHHHHH
Confidence 443335567888999999999999999999998776432211 000 012347788
Q ss_pred HHHHHHHHHhhcccCCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHc-cCchHHHHHHHHHHHHHHhhcccCCCC
Q 001344 326 AILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVAS-NKPLVAGVKVSERVMAIINSLLISTMP 404 (1096)
Q Consensus 326 ~Ll~~~~~rm~~~e~~~~~~~~~e~~~~Dfd~~~ef~~~Rk~~~~ilr~i~~-~~P~~~~~~l~~~l~~~l~~~~~~~~~ 404 (1096)
+++..+..+..+|.+. .+-.|+.++|.++|-...++++=++. +..+.+++.+..++.+ .+
T Consensus 340 rLvs~l~~h~qlp~~~----------~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~------- 400 (559)
T KOG2081|consen 340 RLVSLLKRHVQLPPDQ----------FDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NN------- 400 (559)
T ss_pred HHHHHHHHHccCCCcc----------ccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CC-------
Confidence 8888888888876521 11334556799999999999988777 5777888888888765 11
Q ss_pred hhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhhcCCC
Q 001344 405 AQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPD 484 (1096)
Q Consensus 405 s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~~~~ 484 (1096)
.+|-..||....+++++..+.... .+ ++.+.++.+.++-...| ++--.+-.++.|+.|+..||+
T Consensus 401 -~~We~~EAaLF~l~~~~~~~~~~e-------~~-------i~pevl~~i~nlp~Q~~-~~~ts~ll~g~~~ew~~~~p~ 464 (559)
T KOG2081|consen 401 -ASWEEVEAALFILRAVAKNVSPEE-------NT-------IMPEVLKLICNLPEQAP-LRYTSILLLGEYSEWVEQHPE 464 (559)
T ss_pred -CchHHHHHHHHHHHHHhccCCccc-------cc-------hHHHHHHHHhCCccchh-HHHHHHHHHHHHHHHHHhCcH
Confidence 248889999999999987654421 11 24456666666666666 666777789999999999999
Q ss_pred chhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHcccccHHHHHHHHH
Q 001344 485 AVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGE 564 (1096)
Q Consensus 485 ~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L~E 564 (1096)
++..|++-++..+.. + .+..+|+-+|-++|......+.++++.+.+.+..+... ..+ .|-..|..
T Consensus 465 ~le~v~~~~~~~~~~-----~--------~~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~-~~~-~e~a~l~~ 529 (559)
T KOG2081|consen 465 LLEPVLRYIRQGLQL-----K--------RLASAAALAFHRICSACRVQMTCLIPSLLELIRSLDST-QIN-EEAACLLQ 529 (559)
T ss_pred HHHHHHHHHHHHhhh-----c--------chhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-hcc-HHHHHHHH
Confidence 999999999777641 1 26678999999999998888888888887766655543 233 44444888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhHHHHh
Q 001344 565 AFLVMASAAGIQQQQEVLAWLLEPLSQ 591 (1096)
Q Consensus 565 al~~i~~~~~~~~q~~~l~~ll~P~~~ 591 (1096)
++.++++..+..+-+.-++++.+|...
T Consensus 530 ~~s~i~~~lp~~k~~~~~~el~~~~l~ 556 (559)
T KOG2081|consen 530 GISLIISNLPAHKAKIALEELCEPQLR 556 (559)
T ss_pred HHHHHHhcCCHhhhhHHHHHHhhHHHh
Confidence 888888777777777778888777654
No 9
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=6.1e-10 Score=130.41 Aligned_cols=398 Identities=18% Similarity=0.155 Sum_probs=246.1
Q ss_pred hhHHHHHHHHHHHHHHHhhcc-cchhhHHHHHHHhhcCC--hhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHHHHHh
Q 001344 10 EWALKSQTAALVAEIVRREGI-NLWQELFPSLVSLSSKG--PIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQ 86 (1096)
Q Consensus 10 ~~~irnkla~vlveIvkrewp-~~Wp~fl~~L~~l~~~~--~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~~L~~ 86 (1096)
.+...+.+|++++.|+.-|=| ..||+++..|++-...+ ....|-+|..+-.+|||+-. + ...++-++++.++.
T Consensus 103 ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~p--e-vl~~~sN~iLtaIv- 178 (859)
T KOG1241|consen 103 EPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDP--E-VLEQQSNDILTAIV- 178 (859)
T ss_pred CCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCH--H-HHHHHHhHHHHHHH-
Confidence 345678899999999999999 58999999999876432 35789999999999999975 2 22233333332222
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhc--ccC-cHHHHH--hhcCChh
Q 001344 87 SLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLA--KYG-IIHGCG--FLLSSPD 161 (1096)
Q Consensus 87 ~~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~--~~~-ll~~L~--~ll~~~~ 161 (1096)
.. ..+......+..+++++|-..++..--+.=- +-+ +++..| -..++.+
T Consensus 179 -------------~g-------------mrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~ 232 (859)
T KOG1241|consen 179 -------------QG-------------MRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEE 232 (859)
T ss_pred -------------hh-------------ccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHH
Confidence 11 0111123458889999988887765533221 223 555544 5678899
Q ss_pred HhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcc
Q 001344 162 FRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHC 241 (1096)
Q Consensus 162 ~R~~A~ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~ 241 (1096)
+|.+|..||.-|++.- + +|.+.-.
T Consensus 233 i~~aa~~ClvkIm~Ly--Y-----------------------------------------~~m~~yM------------- 256 (859)
T KOG1241|consen 233 IQVAAFQCLVKIMSLY--Y-----------------------------------------EFMEPYM------------- 256 (859)
T ss_pred HHHHHHHHHHHHHHHH--H-----------------------------------------HHHHHHH-------------
Confidence 9999999999887543 2 1221110
Q ss_pred cccccccHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhh-----hccccccCCCCCcccCCCCCCCCcchhhhhhh
Q 001344 242 IAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMS-----KTKVAHSTGDGSTVNNADSGSGKVDSRKMRIL 316 (1096)
Q Consensus 242 ~~~~~~~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1096)
.+..+..-+.-++.+...|+..+++||+++....++ ...+....++ ...+ ..+...
T Consensus 257 -------~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p-~~~~----------fa~~a~- 317 (859)
T KOG1241|consen 257 -------EQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPP-SSKY----------FARQAL- 317 (859)
T ss_pred -------HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-hhhH----------HHHHHH-
Confidence 011122223334456678899999999998887322 1000000000 0000 011111
Q ss_pred hcchhhhHHHHHHHHHHHhhcccCCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHh
Q 001344 317 SFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIIN 396 (1096)
Q Consensus 317 ~~~~~~il~~Ll~~~~~rm~~~e~~~~~~~~~e~~~~Dfd~~~ef~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~l~ 396 (1096)
.+++|.|++.. .|-++ |+|+|+ |+--|-....+-..+...-++..+.+..-+.+-+.
T Consensus 318 ----~~v~P~Ll~~L----~kqde-------------~~d~Dd--Wnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~ 374 (859)
T KOG1241|consen 318 ----QDVVPVLLELL----TKQDE-------------DDDDDD--WNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQ 374 (859)
T ss_pred ----hHhhHHHHHHH----HhCCC-------------Cccccc--CcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcC
Confidence 36777776433 33111 222222 88888888888888888888777777777665554
Q ss_pred hcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHhc-CCCCchHHHHHHHHHHhh
Q 001344 397 SLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSL-KWTEPPLVVALGHYLDAL 475 (1096)
Q Consensus 397 ~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~-~~~dP~l~s~~~~~l~~l 475 (1096)
+++|...|+.....++|+.| +. . ..+.+...+.+..++.. .++.-.++.-.-|+|++.
T Consensus 375 --------~pdwr~reaavmAFGSIl~g-p~---------~---~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI 433 (859)
T KOG1241|consen 375 --------NPDWRNREAAVMAFGSILEG-PE---------P---DKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRI 433 (859)
T ss_pred --------CcchhhhhHHHHHHHhhhcC-Cc---------h---hhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHH
Confidence 45799999999999999875 11 1 22333444444444432 344446778889988888
Q ss_pred hhhhh---cCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcc---------cchhhHHHHHHH
Q 001344 476 GPFLK---YYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSD---------KSILPHMKDIAD 543 (1096)
Q Consensus 476 ~~fl~---~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~---------~~l~P~l~~i~~ 543 (1096)
.-++. .+..++.+++..+.+.|+..| +|-..+|-+|..+++.++ ....|+++.|++
T Consensus 434 ~d~l~e~~~n~~~l~~~l~~l~~gL~DeP------------rva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~ 501 (859)
T KOG1241|consen 434 ADFLPEAIINQELLQSKLSALLEGLNDEP------------RVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIG 501 (859)
T ss_pred HhhchhhcccHhhhhHHHHHHHHHhhhCc------------hHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHH
Confidence 77664 345677788888877765222 345689999999998731 235589999854
Q ss_pred HHHHHHHcccc---c-HHHHHHHHHHHHHHhc
Q 001344 544 TMAYLQREGRL---L-RGEHNLLGEAFLVMAS 571 (1096)
Q Consensus 544 ~i~~l~~~~~L---~-~~e~~~L~Eal~~i~~ 571 (1096)
. |+...+. . ..-|...||||+.++-
T Consensus 502 ~---Ll~~tdr~dgnqsNLR~AAYeALmElIk 530 (859)
T KOG1241|consen 502 S---LLKVTDRADGNQSNLRSAAYEALMELIK 530 (859)
T ss_pred H---HHhhccccccchhhHHHHHHHHHHHHHH
Confidence 4 4443222 1 2235699999999975
No 10
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.81 E-value=6.1e-06 Score=94.30 Aligned_cols=402 Identities=12% Similarity=0.061 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHHHHHhhcc-cchhhHHHHHHHhhcCC--hhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHHHHHhhH
Q 001344 12 ALKSQTAALVAEIVRREGI-NLWQELFPSLVSLSSKG--PIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSL 88 (1096)
Q Consensus 12 ~irnkla~vlveIvkrewp-~~Wp~fl~~L~~l~~~~--~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~~L~~~~ 88 (1096)
-+.+.+|++++.|+.-|-| ..||+|+.+++.....+ .+..--.+.++-..+|-... +++. +.-+.
T Consensus 109 r~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P--e~li--------~~sN~-- 176 (858)
T COG5215 109 RFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP--EDLI--------QMSNV-- 176 (858)
T ss_pred HHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH--HHHH--------HHhhH--
Confidence 4578899999999999999 68999999999876433 22222366677777764432 1211 11111
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcc--cC-cHHHHH--hhcCChhHh
Q 001344 89 PEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAK--YG-IIHGCG--FLLSSPDFR 163 (1096)
Q Consensus 89 p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~--~~-ll~~L~--~ll~~~~~R 163 (1096)
-+|..+...+. .....++..++|++|-.-+..+--+.=.+ -+ +++..| .-.++.+++
T Consensus 177 -il~aiv~ga~k-----------------~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q 238 (858)
T COG5215 177 -ILFAIVMGALK-----------------NETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQ 238 (858)
T ss_pred -HHHHHHHhhcc-----------------cCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHH
Confidence 11111111111 11234588899999755333222211111 12 444433 344567777
Q ss_pred hHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcccc
Q 001344 164 LHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIA 243 (1096)
Q Consensus 164 ~~A~ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~~~ 243 (1096)
.+|.-||+-|+... |.|.+...|
T Consensus 239 ~aafgCl~kim~Ly-------------------------------------------Y~fm~~ymE-------------- 261 (858)
T COG5215 239 HAAFGCLNKIMMLY-------------------------------------------YKFMQSYME-------------- 261 (858)
T ss_pred HHHHHHHHHHHHHH-------------------------------------------HHHHHHHHH--------------
Confidence 77777777665322 222221110
Q ss_pred cccccHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhccccccCCCCCcccCCCCCCCCcchhhhhhhhcchhhh
Q 001344 244 REDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDI 323 (1096)
Q Consensus 244 ~~~~~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 323 (1096)
+....+.-++++.|.+.|...+++||.++......-.-.-.+ +|+....+-......+ .|+
T Consensus 262 ------~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~--------~pe~p~qn~~fa~aav-----~dv 322 (858)
T COG5215 262 ------NALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKY--------LPEVPAQNHGFARAAV-----ADV 322 (858)
T ss_pred ------HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhh--------cccCchhhcchHHHHH-----HHH
Confidence 012233456678888899999999999888762211000000 1110000000111111 378
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHhhcccCCC
Q 001344 324 SGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTM 403 (1096)
Q Consensus 324 l~~Ll~~~~~rm~~~e~~~~~~~~~e~~~~Dfd~~~ef~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~l~~~~~~~~ 403 (1096)
+|.||...-+ .+ +|+++|+ |+--+-....+...+.+.-+....-+..-+.+- +
T Consensus 323 lP~lL~LL~~----q~-------------ed~~~Dd--Wn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqn--------i 375 (858)
T COG5215 323 LPELLSLLEK----QG-------------EDYYGDD--WNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQN--------I 375 (858)
T ss_pred HHHHHHHHHh----cC-------------CCccccc--cchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHh--------c
Confidence 8888754421 11 1232222 566666666666666655444333333333322 4
Q ss_pred ChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHh-cCCCCchHHHHHHHHHHhhhhhhhc-
Q 001344 404 PAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLS-LKWTEPPLVVALGHYLDALGPFLKY- 481 (1096)
Q Consensus 404 ~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~-~~~~dP~l~s~~~~~l~~l~~fl~~- 481 (1096)
.++.|...|+.....++|+.|=.. ..+.+++.+.+--++. +++..-.+.+.+.|++++++.++..
T Consensus 376 ~~~~w~nreaavmAfGSvm~gp~~-------------~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~ 442 (858)
T COG5215 376 RSESWANREAAVMAFGSVMHGPCE-------------DCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMI 442 (858)
T ss_pred cCchhhhHHHHHHHhhhhhcCccH-------------HHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHh
Confidence 566799999999999999876211 2222333344433333 2333336789999999999887753
Q ss_pred -CC-CchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhc-------ccchhhHHHHHHHHHHHHHHcc
Q 001344 482 -YP-DAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTS-------DKSILPHMKDIADTMAYLQREG 552 (1096)
Q Consensus 482 -~~-~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~-------~~~l~P~l~~i~~~i~~l~~~~ 552 (1096)
.| ..++.++.+.+-.++..|. +-..||-.+..++... +..+.||+..|++.+-.-...
T Consensus 443 i~p~~Hl~~~vsa~liGl~D~p~------------~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~- 509 (858)
T COG5215 443 ISPCGHLVLEVSASLIGLMDCPF------------RSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTEL- 509 (858)
T ss_pred cCccccccHHHHHHHhhhhccch------------HHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHh-
Confidence 22 4567777777444432222 2234555666665552 555788888886555422211
Q ss_pred ccc-HHHHHHHHHHHHHHhcC
Q 001344 553 RLL-RGEHNLLGEAFLVMASA 572 (1096)
Q Consensus 553 ~L~-~~e~~~L~Eal~~i~~~ 572 (1096)
.+. ..-|..+|+||++++-.
T Consensus 510 ~~Ne~n~R~s~fsaLgtli~~ 530 (858)
T COG5215 510 ALNESNLRVSLFSALGTLILI 530 (858)
T ss_pred hccchhHHHHHHHHHHHHHhh
Confidence 122 33467999999999863
No 11
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=2.1e-05 Score=95.96 Aligned_cols=422 Identities=15% Similarity=0.181 Sum_probs=218.4
Q ss_pred hhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhcC-ChhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHHHHHhhH
Q 001344 10 EWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSK-GPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSL 88 (1096)
Q Consensus 10 ~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~~~-~~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~~L~~~~ 88 (1096)
|..+|..++.++..|++.++|.+||++++-.-.+.+. ..++.-.+|.+|+.|+- .+.+ -...+|..|-..+...+
T Consensus 102 p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k-~ye~---k~~eeR~~l~~~v~~~f 177 (1010)
T KOG1991|consen 102 PELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFK-TYEW---KKDEERQPLGEAVEELF 177 (1010)
T ss_pred chHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHH-HHhh---ccccccccHHHHHHHHH
Confidence 7889999999999999999999999999999887754 45677788888888872 2221 11234455555666668
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHHHhhcCChhHhhHHHH
Q 001344 89 PEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACE 168 (1096)
Q Consensus 89 p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~~~~~R~~A~e 168 (1096)
|.|++..++++... + -+.+.+...-|++...++----+- .+..++.-..=++
T Consensus 178 P~il~~~~~ll~~~------------s---~~s~el~klIlKifks~~~~~LP~-------------~L~~~~~f~~W~~ 229 (1010)
T KOG1991|consen 178 PDILQIFNGLLSQE------------S---YQSVELQKLILKIFKSLIYYELPL-------------ELSAPETFTSWME 229 (1010)
T ss_pred HHHHHHHHhhcccc------------c---hHHHHHHHHHHHHHHHHHHHhCCH-------------HhhCchhHHHHHH
Confidence 88888888887642 1 122345555566543333221111 1222333334444
Q ss_pred HHHHHcCCCCCCCC-------ChH-------HH-HHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHH
Q 001344 169 FFKLVSPRKGPADA-------SAS-------EF-ESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVS 233 (1096)
Q Consensus 169 cL~~i~sr~~~~~~-------~~~-------~f-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~ 233 (1096)
-+..|++|..+.+. |.. -+ -..|..+|+. -+ ++.....+..+|.+.++.-.+.
T Consensus 230 l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~R-----------yg-~~~~~~~~y~~Fa~~f~~n~~~ 297 (1010)
T KOG1991|consen 230 LFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFER-----------YG-SPSLVVPEYKEFAQMFLKNFAQ 297 (1010)
T ss_pred HHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHH-----------hC-CccccchhhHHHHHHHHHHHHH
Confidence 44556666654211 100 00 0122222221 11 1111222223344444432111
Q ss_pred hhhhhhcccccccccHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhccccccCCCCCcccCCCCCCCCcchhhh
Q 001344 234 LGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKM 313 (1096)
Q Consensus 234 lg~~~~~~~~~~~~~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (1096)
- .+..||..+-+..+ .+.++-.++-|-..++.+..++...
T Consensus 298 ~-------------ile~~lk~l~~~~~--~~yls~rvl~~~l~fl~~~Vs~~~t------------------------- 337 (1010)
T KOG1991|consen 298 G-------------ILEVFLKILEQWRQ--QLYLSDRVLYYLLNFLEQCVSHAST------------------------- 337 (1010)
T ss_pred H-------------HHHHHHHHHHHHHh--cccCCHHHHHHHHHHHHHhccHHHH-------------------------
Confidence 1 22333333333333 3344444445545555542222100
Q ss_pred hhhhcchhhhHHHHHHHHHHHhhcccCCCCC--------CCCccccccccCChhhHHHHHHHHHHHHHHHHccCchHHHH
Q 001344 314 RILSFLNDDISGAILDISFQRLVKREKAPGT--------QGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGV 385 (1096)
Q Consensus 314 ~~~~~~~~~il~~Ll~~~~~rm~~~e~~~~~--------~~~~e~~~~Dfd~~~ef~~~Rk~~~~ilr~i~~~~P~~~~~ 385 (1096)
. ..+..-+.+++...++|--...+ ++ .||.+.-||=-+|+..=+.-..+.+-.+++.+-..+++
T Consensus 338 -w------kll~PHl~~ii~~vIFPlmc~~d~deelwe~DP-~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~ 409 (1010)
T KOG1991|consen 338 -W------KLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDP-YEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLP 409 (1010)
T ss_pred -H------HHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCH-HHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhh
Confidence 0 11222233344444433222110 11 22322222222223333444556666667776566666
Q ss_pred HHHHHHHHHHhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCCCCc--h
Q 001344 386 KVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEP--P 463 (1096)
Q Consensus 386 ~l~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dP--~ 463 (1096)
.+..-+..++.+....+.+-.....-|++...++++.+-+.+.+ +| -..++.++...+--.+++| -
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s-~~-----------~~~mE~flv~hVfP~f~s~~g~ 477 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKS-PY-----------KSQMEYFLVNHVFPEFQSPYGY 477 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCC-ch-----------HHHHHHHHHHHhhHhhcCchhH
Confidence 66666666665443333333447889999999999987555532 22 1236666666664455566 5
Q ss_pred HHHHHHHHHHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHH---HhcccchhhHHHH
Q 001344 464 LVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIA---KTSDKSILPHMKD 540 (1096)
Q Consensus 464 l~s~~~~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~---~~~~~~l~P~l~~ 540 (1096)
+|+..||++++|+..==..+.-+.+.++-...+|.. ++..-||-.|+-++..+. +.++..+.||+.+
T Consensus 478 Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~----------d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~ 547 (1010)
T KOG1991|consen 478 LRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLN----------DNELPVRVEAALALQSFISNQEQADEKVSAHVPP 547 (1010)
T ss_pred HHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcc----------CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhH
Confidence 999999999999853222334455555555555531 122234445555554444 4455668888888
Q ss_pred HHHHH
Q 001344 541 IADTM 545 (1096)
Q Consensus 541 i~~~i 545 (1096)
+.+.+
T Consensus 548 ~mq~l 552 (1010)
T KOG1991|consen 548 IMQEL 552 (1010)
T ss_pred HHHHH
Confidence 74433
No 12
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.11 E-value=0.013 Score=71.70 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=51.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhc-CChhHHHHHHHHHHhhhhhhc
Q 001344 8 CEEWALKSQTAALVAEIVRREGINLWQELFPSLVSLSS-KGPIQAELVSMMLRWLPEDIT 66 (1096)
Q Consensus 8 ~e~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~~-~~~~~~El~L~iL~~L~EDv~ 66 (1096)
.++..||+.++-.++.|+.-+||+.||++++-+..+.+ .+.+..-.+|.+|..++.|+.
T Consensus 101 ~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~ 160 (1005)
T KOG2274|consen 101 DSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVD 160 (1005)
T ss_pred ccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999998765 557777889999999998885
No 13
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.077 Score=64.55 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhcCChh
Q 001344 10 EWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPI 49 (1096)
Q Consensus 10 ~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~~~~~~ 49 (1096)
+.-|...++..+.-|.|++.|+.||+++++|+.--+.|.-
T Consensus 101 ~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~ 140 (960)
T KOG1992|consen 101 PFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDF 140 (960)
T ss_pred cHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccch
Confidence 4567788999999999999999999999999986665543
No 14
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.018 Score=69.51 Aligned_cols=271 Identities=14% Similarity=0.111 Sum_probs=142.6
Q ss_pred hhhcchhhhHHHHHHHHHHHhhc--ccCCCC--CCCCccccccccCChhhH-HHHHHHHHHHHHHHHccCchHHHHHHHH
Q 001344 315 ILSFLNDDISGAILDISFQRLVK--REKAPG--TQGPLELWSDDFEGKGDF-SQYRSRLLELVKFVASNKPLVAGVKVSE 389 (1096)
Q Consensus 315 ~~~~~~~~il~~Ll~~~~~rm~~--~e~~~~--~~~~~e~~~~Dfd~~~ef-~~~Rk~~~~ilr~i~~~~P~~~~~~l~~ 389 (1096)
...|+++.-+..|.+....+... +++.++ .++ |.|..|-+. .++ -++|-|...+..-+-.-..+...+.+.+
T Consensus 362 ~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEeW~~dP--E~~~~Eq~~-~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~ 438 (978)
T KOG1993|consen 362 YNSFLTDNRITNLCDLLVTHYFLLTEEELEEWTQDP--EGWVLEQSG-GDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLD 438 (978)
T ss_pred HHHhcchHHHHHHHHHHHHHHHhcCHHHHHHHhcCh--HHhhhhccc-ccceeccchhHHHHHHHHHHHHHHhhhHHHHH
Confidence 44677788888888888777665 222210 011 112111111 123 3778887777777777677777777777
Q ss_pred HHHHHHhhcccCCCCh-hhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHH--hc---CCCCch
Q 001344 390 RVMAIINSLLISTMPA-QDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLL--SL---KWTEPP 463 (1096)
Q Consensus 390 ~l~~~l~~~~~~~~~s-~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll--~~---~~~dP~ 463 (1096)
.+.+......+...++ ...+.-||.+...+-.....+... | +..|++.-+ .+ .+.--.
T Consensus 439 ~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~------d----------F~~Wl~~~llpEl~~~~~~~Ri 502 (978)
T KOG1993|consen 439 MIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNIL------D----------FDKWLQEALLPELANDHGNSRI 502 (978)
T ss_pred HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcC------C----------HHHHHHHhhCHHhhhcccchhH
Confidence 7766554331111122 346677777666554444444321 1 122322211 11 122225
Q ss_pred HHHHHHHHHHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHh---cccchhhHHHH
Q 001344 464 LVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKT---SDKSILPHMKD 540 (1096)
Q Consensus 464 l~s~~~~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~---~~~~l~P~l~~ 540 (1096)
+|..+.|.+++-.. .+. +.-+.+.+-+.|--+.. |. +-+-||..++.+|..+... .++.+.||++.
T Consensus 503 iRRRVa~ilg~Wvs-vq~-~~e~k~l~Y~a~lnLL~-d~--------~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~len 571 (978)
T KOG1993|consen 503 IRRRVAWILGQWVS-VQQ-KLELKPLLYCAFLNLLQ-DQ--------NDLVVRLTTARTLKLVVDDWNFSEDSFLPYLEN 571 (978)
T ss_pred HHHHHHHHHhhhhh-eec-hHhHHHHHHHHHHHhcC-cc--------ccceeehHHHHHHHHhhhhccCChhhhhhhHHH
Confidence 77888887777544 122 22233333333222210 22 1225788999999888888 68889999999
Q ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHhhhchHhHh----hhhcCChHHHHHhccCC
Q 001344 541 IADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQ----NNYLSEPLGLVRLCSDT 616 (1096)
Q Consensus 541 i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~~~~~~~q~~~l~~ll~P~~~~W~~~~~~----~~~l~~~~~f~~~~~~~ 616 (1096)
+...+-.++..-.. -.-|......+.+++...++.-. -+...+++-+-.-|...+-+ .+.+.....||+-+|..
T Consensus 572 lf~~lfkll~~~~e-~Dtk~~VL~~ls~lI~r~~e~I~-P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~q 649 (978)
T KOG1993|consen 572 LFVLLFKLLKAVEE-CDTKTSVLNLLSTLIERVSEHIA-PYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQ 649 (978)
T ss_pred HHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccC
Confidence 97777766654111 12344455555555543333222 33444555455556533311 13344446777777754
Q ss_pred c
Q 001344 617 S 617 (1096)
Q Consensus 617 ~ 617 (1096)
+
T Consensus 650 S 650 (978)
T KOG1993|consen 650 S 650 (978)
T ss_pred C
Confidence 3
No 15
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.22 Score=59.20 Aligned_cols=237 Identities=10% Similarity=0.114 Sum_probs=137.1
Q ss_pred CCchhhhHHHHHHHHHHHHHHHhhcccc------hhhHHHHHHHhhcCC-hhHHHHHHHHHHhhhhhhcccccCchHHHH
Q 001344 5 ADPCEEWALKSQTAALVAEIVRREGINL------WQELFPSLVSLSSKG-PIQAELVSMMLRWLPEDITVHNEDLEGDRR 77 (1096)
Q Consensus 5 ~~~~e~~~irnkla~vlveIvkrewp~~------Wp~fl~~L~~l~~~~-~~~~El~L~iL~~L~EDv~~~~edl~~~Rr 77 (1096)
.+|.-++|+-..+.++++-+-|.+|... ..+-+.++....+.+ ..++-+...||..|..|.-...-..+..+-
T Consensus 92 ~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqemN~~~~~~p~tkH 171 (1082)
T KOG1410|consen 92 GAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEMNQADGMDPSTKH 171 (1082)
T ss_pred CCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHHhhCCCCCCcchHH
Confidence 3567789999999999999999999953 457777888777665 667888999999999888762223466776
Q ss_pred HHHHHHHHhh-HhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHH-hccc-------------cCCcc
Q 001344 78 RLLLRGLTQS-LPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAIN-AYAE-------------WAPLP 142 (1096)
Q Consensus 78 ~~ll~~L~~~-~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~-~yl~-------------Wip~~ 142 (1096)
|.+....+.. +=+||....+.|...+...++...++ .-...+...+|+|++ .|+. -||.+
T Consensus 172 Rkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~-----~L~~~vL~L~l~Cl~FDfiGss~DEssed~ctVQIPTs 246 (1082)
T KOG1410|consen 172 RKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQL-----GLLMQVLKLNLNCLNFDFIGSSTDESSEDLCTVQIPTS 246 (1082)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHh-----hHHHHHHHHHhhhccccccccccccccccccceecCcH
Confidence 6777677655 55888888888876542211110000 011224445555543 1111 23332
Q ss_pred --hhcc-cCcHHHHHhhcC--ChhHhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC-
Q 001344 143 --DLAK-YGIIHGCGFLLS--SPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAI- 216 (1096)
Q Consensus 143 --~i~~-~~ll~~L~~ll~--~~~~R~~A~ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~~~~~~~~~~~~~~~~~~~~- 216 (1096)
.++. ...+++.+.+.+ .+++...|++||.++++-++..- +.+.=..++..+... ..+++ .+|++.
T Consensus 247 WRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLF-N~aeRa~yl~~Lv~G----vk~il----~np~~Ls 317 (1082)
T KOG1410|consen 247 WRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLF-NGAERAKYLQHLVEG----VKRIL----ENPQGLS 317 (1082)
T ss_pred HHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHH----HHHHH----hCCcCCC
Confidence 1222 237777753333 37899999999999998764331 111112233333332 22222 133333
Q ss_pred ChhhhHHHHHHHHHHHHhhh--hhhcccccccccHHHHHHHHHHhh
Q 001344 217 DESEFEFAEYICESMVSLGT--SNLHCIAREDTILSMYLQQMLGYF 260 (1096)
Q Consensus 217 dE~~y~f~k~l~e~L~~lg~--~~~~~~~~~~~~l~~~L~~lL~~t 260 (1096)
|..+| ..+|.++.-|-+ ++...+. -+.....++++-.||
T Consensus 318 D~~ny---HeFCRllaRlktNYQL~ELv~--v~~Y~e~irLiAeFT 358 (1082)
T KOG1410|consen 318 DPANY---HEFCRLLARLKTNYQLGELVK--VECYPEVIRLIAEFT 358 (1082)
T ss_pred CcchH---HHHHHHHHHHHhhhhhHhhhc--cCCcHHHHHHHHHHH
Confidence 22333 457777776632 2333221 224556666666664
No 16
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=1.8 Score=55.36 Aligned_cols=185 Identities=16% Similarity=0.156 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHhhcccCCCChh-hHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHH
Q 001344 362 SQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQ-DLAVMESMQSALENVVSAVFDGSNQFGGANSEVQ 440 (1096)
Q Consensus 362 ~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~l~~~~~~~~~s~-~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~ 440 (1096)
|.+|+-..-.+..++.-.++.....+-+.++-++... .++ +-..| |+ |-|+ .++.. ...
T Consensus 362 w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l-----~DphprVr~-AA---~nai-gQ~st---dl~------- 421 (1075)
T KOG2171|consen 362 WKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGL-----NDPHPRVRY-AA---LNAI-GQMST---DLQ------- 421 (1075)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc-----CCCCHHHHH-HH---HHHH-Hhhhh---hhc-------
Confidence 7889888888888887777777776666666665442 222 23333 22 2223 11111 111
Q ss_pred HHHHHHHHHHHH-HHHhcCCCCchHHHHHHHHHHhhhhhhhcC-----CCchhHHHHHHHHhhccCCCccCCCCchHHHH
Q 001344 441 LSLSRIFEGLLR-QLLSLKWTEPPLVVALGHYLDALGPFLKYY-----PDAVGGVISKLFELLTSLPFVFKDPSTNSARH 514 (1096)
Q Consensus 441 ~~l~~~l~~Ll~-~ll~~~~~dP~l~s~~~~~l~~l~~fl~~~-----~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~ 514 (1096)
+.+.+.-.+.+- .|+. ...++....++.+.-.++..|+... .+++..+++|.|..+.. ...+.
T Consensus 422 p~iqk~~~e~l~~aL~~-~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~----------~~~~~ 490 (1075)
T KOG2171|consen 422 PEIQKKHHERLPPALIA-LLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQ----------SSKPY 490 (1075)
T ss_pred HHHHHHHHHhccHHHHH-HhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhc----------CCchh
Confidence 112222222221 1221 1222323334444444555555443 35677777766555531 13357
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHccc--ccHHHHHHHHHHHHHHhcCCCHHH
Q 001344 515 ARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGR--LLRGEHNLLGEAFLVMASAAGIQQ 577 (1096)
Q Consensus 515 vR~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~~~--L~~~e~~~L~Eal~~i~~~~~~~~ 577 (1096)
||.+|.+++..+|.++...+.||++.+.-.+...+.+++ =.+.-|..-+|.+.+|+..+|-++
T Consensus 491 v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~ 555 (1075)
T KOG2171|consen 491 VQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEK 555 (1075)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999877777776632 112233345899998887665543
No 17
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.56 E-value=0.31 Score=56.62 Aligned_cols=167 Identities=13% Similarity=0.111 Sum_probs=91.9
Q ss_pred hhHHHHHH-HHHHHhhcccCCC---CCCCCccccccccCChhhHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHhh
Q 001344 322 DISGAILD-ISFQRLVKREKAP---GTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINS 397 (1096)
Q Consensus 322 ~il~~Ll~-~~~~rm~~~e~~~---~~~~~~e~~~~Dfd~~~ef~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~l~~ 397 (1096)
+.+.++.+ +++..|...++.. ++++ .||.+.|+|+ +|+.+-|+-..++++.++...+..+.+.+.+.++..+..
T Consensus 183 ~~L~~Iie~VI~Pnl~~~e~D~ElfEddP-~EYIrrd~e~-sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~ 260 (370)
T PF08506_consen 183 PHLQQIIEKVIFPNLCLREEDEELFEDDP-EEYIRRDLEG-SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQ 260 (370)
T ss_dssp HHHHHHHHHTHHHHHS--HHHHHHHHHSH-HHHHHHHSCS-S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCccCCCHHHHHHHccCH-HHHHHhhccc-cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444443 5566666644422 1122 5788888887 578899999999999999999998888888888777763
Q ss_pred cccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCC-Ch-HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhh
Q 001344 398 LLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGA-NS-EVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDAL 475 (1096)
Q Consensus 398 ~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~-~~-~~~~~l~~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l 475 (1096)
.... .+..|..-|++..++.|+.........+.+.. +. ...+++.+.+..-|+ .-..+.|.++...|+++..|
T Consensus 261 y~~~--~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~---~~~~~~piLka~aik~~~~F 335 (370)
T PF08506_consen 261 YASN--PSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ---PDVNSHPILKADAIKFLYTF 335 (370)
T ss_dssp HHH---TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH----SS-S-HHHHHHHHHHHHHH
T ss_pred HhhC--CcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc---ccCCCCcchHHHHHHHHHHH
Confidence 2111 12347889999999988855332211111111 11 222333333222222 23466788999988877776
Q ss_pred hhhhhcCCCchhHHHHHHHHhh
Q 001344 476 GPFLKYYPDAVGGVISKLFELL 497 (1096)
Q Consensus 476 ~~fl~~~~~~l~~VL~klf~~l 497 (1096)
-.-+. ++.+..++.-+...|
T Consensus 336 r~~l~--~~~l~~~~~~l~~~L 355 (370)
T PF08506_consen 336 RNQLP--KEQLLQIFPLLVNHL 355 (370)
T ss_dssp GGGS---HHHHHHHHHHHHHHT
T ss_pred HhhCC--HHHHHHHHHHHHHHh
Confidence 54332 234455555554444
No 18
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.16 E-value=4.2 Score=49.10 Aligned_cols=71 Identities=10% Similarity=0.169 Sum_probs=57.5
Q ss_pred HHHHHHHHHhccccCCcchhcccC-cHHHHHhhcCC--hhHhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHH
Q 001344 125 VTATLNAINAYAEWAPLPDLAKYG-IIHGCGFLLSS--PDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQI 197 (1096)
Q Consensus 125 v~~aL~tl~~yl~Wip~~~i~~~~-ll~~L~~ll~~--~~~R~~A~ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~ 197 (1096)
+..|+.|++.|+---+-+...+-+ +++.|+.+.+| +++|...|..|.-++.-+ ++.-.++++.++++|+..
T Consensus 191 Rs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr--~dkl~phl~~IveyML~~ 264 (885)
T KOG2023|consen 191 RSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVR--PDKLVPHLDNIVEYMLQR 264 (885)
T ss_pred HHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhc--HHhcccchHHHHHHHHHH
Confidence 345678888888777767776655 99999877766 999999999999999888 666678999999998765
No 19
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.34 E-value=0.77 Score=47.70 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=86.6
Q ss_pred cCCCCchHHHHHHHHHHhhhh--hhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHh-cccc
Q 001344 457 LKWTEPPLVVALGHYLDALGP--FLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKT-SDKS 533 (1096)
Q Consensus 457 ~~~~dP~l~s~~~~~l~~l~~--fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~-~~~~ 533 (1096)
+++++|.+|...+.++..+.. |+|.++..+..++. .+. |....+|..|...|..+.++ .|+.
T Consensus 34 L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~----~l~-----------D~~~~Ir~~A~~~~~e~~~~~~~~~ 98 (178)
T PF12717_consen 34 LRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILK----LLV-----------DENPEIRSLARSFFSELLKKRNPNI 98 (178)
T ss_pred HCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHH----HHc-----------CCCHHHHHHHHHHHHHHHHhccchH
Confidence 478999999998888887765 66666555444443 231 23457999999999999999 8888
Q ss_pred hhhHHHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHhhh
Q 001344 534 ILPHMKDIADTMAYLQREG---RLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQW 593 (1096)
Q Consensus 534 l~P~l~~i~~~i~~l~~~~---~L~~~e~~~L~Eal~~i~~~~~~~~q~~~l~~ll~P~~~~W 593 (1096)
+..++..++..+......+ ..+..++..+|.+++-..+. ...+.++++.+..-+...+
T Consensus 99 i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~--d~~~~~l~~kl~~~~~~~~ 159 (178)
T PF12717_consen 99 IYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK--DKQKESLVEKLCQRFLNAV 159 (178)
T ss_pred HHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc--HHHHHHHHHHHHHHHHHHc
Confidence 8888888766665332222 46778888999888766543 4567778888888887777
No 20
>PTZ00429 beta-adaptin; Provisional
Probab=93.83 E-value=26 Score=44.65 Aligned_cols=161 Identities=11% Similarity=0.168 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHH
Q 001344 363 QYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLS 442 (1096)
Q Consensus 363 ~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~ 442 (1096)
+|++.....+..++...|. ..+++.+.|..++... ..+. -|+ ...+..++.. |++ ..
T Consensus 383 ef~r~aIrAIg~lA~k~~~-~a~~cV~~Ll~ll~~~-------~~~v-~e~-i~vik~Ilrk-------yP~------~~ 439 (746)
T PTZ00429 383 VFVVEVVRAIASLAIKVDS-VAPDCANLLLQIVDRR-------PELL-PQV-VTAAKDIVRK-------YPE------LL 439 (746)
T ss_pred HHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHhcCC-------chhH-HHH-HHHHHHHHHH-------Ccc------HH
Confidence 6777777777777766554 4556666666666432 1232 233 3334444332 211 11
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHH
Q 001344 443 LSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTS 522 (1096)
Q Consensus 443 l~~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~ 522 (1096)
.+..++..+..-...+|..+...+|.++.|+.++... +.+|+++.+.+. . ....||.+.-++
T Consensus 440 ---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a----~~~L~~~i~~f~---~--------E~~~VqlqlLta 501 (746)
T PTZ00429 440 ---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENG----KDIIQRFIDTIM---E--------HEQRVQLAILSA 501 (746)
T ss_pred ---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhH----HHHHHHHHhhhc---c--------CCHHHHHHHHHH
Confidence 2344444332346789999999999999999877553 445555533221 1 123689999999
Q ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHHc-ccccHHHHHHHHHHHH
Q 001344 523 FIRIAKTSDKSILPHMKDIADTMAYLQRE-GRLLRGEHNLLGEAFL 567 (1096)
Q Consensus 523 f~rl~~~~~~~l~P~l~~i~~~i~~l~~~-~~L~~~e~~~L~Eal~ 567 (1096)
.+|+.-..|....+.+..+++ .+... .+..-.+|..+|=.++
T Consensus 502 ~vKlfl~~p~~~~~~l~~vL~---~~t~~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 502 AVKMFLRDPQGMEPQLNRVLE---TVTTHSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred HHHHHhcCcHHHHHHHHHHHH---HHHhcCCChhHHHHHHHHHHHH
Confidence 999999988766555555432 22222 3455667777776554
No 21
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=92.59 E-value=32 Score=42.10 Aligned_cols=165 Identities=14% Similarity=0.183 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHH
Q 001344 363 QYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLS 442 (1096)
Q Consensus 363 ~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~ 442 (1096)
+||+.+...+..++...|... .|..+.+-..+... ..+..-|....+.. ++..... . ...
T Consensus 355 ~~~~~~i~~I~~la~~~~~~~-~~~v~~l~~ll~~~-------~~~~~~~~~~~i~~-ll~~~~~---------~--~~~ 414 (526)
T PF01602_consen 355 DFRRELIKAIGDLAEKFPPDA-EWYVDTLLKLLEIS-------GDYVSNEIINVIRD-LLSNNPE---------L--REK 414 (526)
T ss_dssp HHHHHHHHHHHHHHHHHGSSH-HHHHHHHHHHHHCT-------GGGCHCHHHHHHHH-HHHHSTT---------T--HHH
T ss_pred hhhhhHHHHHHHHHhccCchH-HHHHHHHHHhhhhc-------cccccchHHHHHHH-HhhcChh---------h--hHH
Confidence 488888888888888776543 34445555555431 11223333333332 2222111 1 122
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHH
Q 001344 443 LSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTS 522 (1096)
Q Consensus 443 l~~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~ 522 (1096)
. +..+++.+.. .++|.++...+|++|.|+...... +..+.++..+.+... .....+|..+.++
T Consensus 415 ~---l~~L~~~l~~--~~~~~~~~~~~wilGEy~~~~~~~-~~~~~~~~~l~~~~~-----------~~~~~vk~~ilt~ 477 (526)
T PF01602_consen 415 I---LKKLIELLED--ISSPEALAAAIWILGEYGELIENT-ESAPDILRSLIENFI-----------EESPEVKLQILTA 477 (526)
T ss_dssp H---HHHHHHHHTS--SSSHHHHHHHHHHHHHHCHHHTTT-THHHHHHHHHHHHHT-----------TSHHHHHHHHHHH
T ss_pred H---HHHHHHHHHH--hhHHHHHHHHHhhhcccCCccccc-ccHHHHHHHHHHhhc-----------cccHHHHHHHHHH
Confidence 2 4444444443 788889999999999999888761 134444554433332 1234689999999
Q ss_pred HHHHHHhccc-chhhHHHHHHHHHHHHHH--cccccHHHHHHHHHHHH
Q 001344 523 FIRIAKTSDK-SILPHMKDIADTMAYLQR--EGRLLRGEHNLLGEAFL 567 (1096)
Q Consensus 523 f~rl~~~~~~-~l~P~l~~i~~~i~~l~~--~~~L~~~e~~~L~Eal~ 567 (1096)
+.|+....+. ...+-+ .+.+.++.. +.+..-++|..+|-.++
T Consensus 478 ~~Kl~~~~~~~~~~~~i---~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 478 LAKLFKRNPENEVQNEI---LQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHSCSTTHHHHH---HHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCchhhHHHH---HHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 9999999875 344433 333443333 33455556666665554
No 22
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=92.34 E-value=41 Score=42.78 Aligned_cols=281 Identities=11% Similarity=0.076 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHh-hcCChhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHHHHHhhHhHH
Q 001344 13 LKSQTAALVAEIVRREGINLWQELFPSLVSL-SSKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEI 91 (1096)
Q Consensus 13 irnkla~vlveIvkrewp~~Wp~fl~~L~~l-~~~~~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~~L~~~~p~I 91 (1096)
+.|-+.+++.-++++-.-.+-.++..+|+.- .+.-+..+++.-.-|++..-++..+... .+ .|.+
T Consensus 63 VQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~-----------~l---a~tV 128 (1233)
T KOG1824|consen 63 VQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSS-----------FL---AATV 128 (1233)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccc-----------cc---ccHH
Confidence 4455566666666665556666666666653 2333556667777777766666542211 01 2233
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccc----cCCcchhcccCcHHHH-H-hhcCChhHhhH
Q 001344 92 LPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAE----WAPLPDLAKYGIIHGC-G-FLLSSPDFRLH 165 (1096)
Q Consensus 92 ~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~----Wip~~~i~~~~ll~~L-~-~ll~~~~~R~~ 165 (1096)
+.-+...+.+... ++. ....+...+|..++.|++ -+|- +..+++..+ + ...+..-+|..
T Consensus 129 ~~~~t~~l~~~i~--------~qe----~~sai~~e~lDil~d~lsr~g~ll~~---fh~~il~~l~~ql~s~R~aVrKk 193 (1233)
T KOG1824|consen 129 CKRITPKLKQAIS--------KQE----DVSAIKCEVLDILADVLSRFGTLLPN---FHLSILKCLLPQLQSPRLAVRKK 193 (1233)
T ss_pred HHHHHHHHHHHhh--------hcc----cchhhHHHHHHHHHHHHHhhcccCcc---hHHHHHHHHhhcccChHHHHHHH
Confidence 3333333332110 011 111244455555555543 2232 334455554 3 33444789999
Q ss_pred HHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcccccc
Q 001344 166 ACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIARE 245 (1096)
Q Consensus 166 A~ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~~~~~ 245 (1096)
|+-||..+++-. + ...|..+++.+... +. .+ .-.+.--.+++.++....+-|.....
T Consensus 194 ai~~l~~la~~~--~---~~ly~~li~~Ll~~-----------L~-~~-~q~~~~rt~Iq~l~~i~r~ag~r~~~----- 250 (1233)
T KOG1824|consen 194 AITALGHLASSC--N---RDLYVELIEHLLKG-----------LS-NR-TQMSATRTYIQCLAAICRQAGHRFGS----- 250 (1233)
T ss_pred HHHHHHHHHHhc--C---HHHHHHHHHHHHhc-----------cC-CC-CchHHHHHHHHHHHHHHHHhcchhhc-----
Confidence 999999988654 1 23455555444322 11 11 11222334566666655555544333
Q ss_pred cccHHHHHHHHHHhh---ccchhHHHHHHHHHHHHHHHHhhhhccccccCCCCCcccCCCCCCCCcchhhhhhhhcchhh
Q 001344 246 DTILSMYLQQMLGYF---QHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDD 322 (1096)
Q Consensus 246 ~~~l~~~L~~lL~~t---~hpsl~vs~~~l~~W~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (1096)
.++...+++..|+ .-..+++..-+++..-+|++.. ++ .+. .
T Consensus 251 --h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rc-p~----------------------------ei~-----p 294 (1233)
T KOG1824|consen 251 --HLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRC-PK----------------------------EIL-----P 294 (1233)
T ss_pred --ccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhC-hh----------------------------hhc-----c
Confidence 4556677788887 6677889999999888888762 00 011 5
Q ss_pred hHHHHHHHHHHHhhcccCCC----CCC-----CCcccc--ccccCChhhH-HHHHHHHHHHHHHHHccCch
Q 001344 323 ISGAILDISFQRLVKREKAP----GTQ-----GPLELW--SDDFEGKGDF-SQYRSRLLELVKFVASNKPL 381 (1096)
Q Consensus 323 il~~Ll~~~~~rm~~~e~~~----~~~-----~~~e~~--~~Dfd~~~ef-~~~Rk~~~~ilr~i~~~~P~ 381 (1096)
+.|++...+.+.+.|+.... +++ ++.+.+ +++|.||+|- |-.||-...++..+..-.++
T Consensus 295 ~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E 365 (1233)
T KOG1824|consen 295 HVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLE 365 (1233)
T ss_pred cchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHH
Confidence 67888888889888855432 110 001111 1345455554 89999888887776655444
No 23
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.11 E-value=0.79 Score=42.47 Aligned_cols=55 Identities=18% Similarity=0.410 Sum_probs=41.1
Q ss_pred chhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Q 001344 485 AVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQR 550 (1096)
Q Consensus 485 ~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~ 550 (1096)
++..++..++.++. |...+||..||.+|..|++.....++||++.|.+.+..+..
T Consensus 24 ~l~~Il~pVL~~~~-----------D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 24 YLDEILPPVLKCFD-----------DQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred HHHHHHHHHHHHcC-----------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555555555542 23348999999999999999999999999999766665444
No 24
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=89.59 E-value=25 Score=41.97 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=52.2
Q ss_pred CCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHc--cc-ccHHHH
Q 001344 483 PDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQRE--GR-LLRGEH 559 (1096)
Q Consensus 483 ~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~--~~-L~~~e~ 559 (1096)
.+++..+|+.+|..+.. ++. ..++ ...-...|+.....+.+.|+...+++++...+.. ++ =.++=.
T Consensus 21 ~p~~~~ll~~Lf~~i~~-~~s---~ENe-------ylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~Fn 89 (435)
T PF03378_consen 21 QPFAQQLLQNLFALIEK-PGS---AENE-------YLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFN 89 (435)
T ss_dssp TCCHHHHHHHHHHHHHT-T-S---TC-H-------HHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHH
T ss_pred hhhHHHHHHHHHHHHhc-CCC---ccch-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchh
Confidence 45788999999998863 221 1122 3445677888888888999999887777766643 12 234555
Q ss_pred HHHHHHHHHHhc
Q 001344 560 NLLGEAFLVMAS 571 (1096)
Q Consensus 560 ~~L~Eal~~i~~ 571 (1096)
..++|++++++-
T Consensus 90 HylFEsi~~lir 101 (435)
T PF03378_consen 90 HYLFESIGALIR 101 (435)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 689999988875
No 25
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=89.08 E-value=29 Score=39.63 Aligned_cols=133 Identities=14% Similarity=0.132 Sum_probs=72.6
Q ss_pred chhHHHHHHHhhhcccchhhhHHHHHhHHHHHHHhhcccchhhhHHHHHH---HHHHHHHHhccCchHh---hHHHHHHH
Q 001344 919 LALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKD---LFSAIIRGLALESNAV---ISADLVGL 992 (1096)
Q Consensus 919 i~~~~l~~~~~~l~w~Dt~~~~ka~~~~~~l~~~~~~~~~~~l~~~~~~~---~~~a~l~~L~~~~~~~---~~~~l~~L 992 (1096)
....++..+..++.=.+...+..++..+..++......+.+...+|.... +++-++..|.+..+.. .|..++.-
T Consensus 162 ~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~ 241 (319)
T PF08767_consen 162 QFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSN 241 (319)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH
Confidence 33444555555554334445555556666666655433344455555433 4444555555555533 34444443
Q ss_pred HHHHHHh---cCCCC-----------chHHHHHHh-CCCCCHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhhcC
Q 001344 993 CREIFIY---MCDRD-----------PAPRQVLLS-LPCITPQDLLAFEDALTKTAS-PREQKQHMRSLLVLGTG 1051 (1096)
Q Consensus 993 ~~~iy~~---l~~~~-----------~~~~~vL~~-lP~i~~~~l~~f~~~l~~~~s-~k~qr~~~k~ll~~~~g 1051 (1096)
...+-+. =.|.. ....+.|.+ -|+++++.+..|-..|.+... ..+=|.+++++|-.++.
T Consensus 242 Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~l~~~qi~~fv~~Lf~~~~d~~~Fk~~lrDFlI~~ke 316 (319)
T PF08767_consen 242 LFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFPNLSPKQIENFVQGLFELNNDPEKFKTHLRDFLIQLKE 316 (319)
T ss_dssp HHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 3333221 11111 123455554 599999999999999987655 56669999999987653
No 26
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=86.45 E-value=97 Score=38.62 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHHHhhcc-cchhhHHHHHHHhhcCCh-hHHHHHHHHHHhhh
Q 001344 10 EWALKSQTAALVAEIVRREGI-NLWQELFPSLVSLSSKGP-IQAELVSMMLRWLP 62 (1096)
Q Consensus 10 ~~~irnkla~vlveIvkrewp-~~Wp~fl~~L~~l~~~~~-~~~El~L~iL~~L~ 62 (1096)
+.-.|..+..+++-|+.-||| +.|+ |++....+.+.++ +++--.|..|..|+
T Consensus 101 p~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elf 154 (970)
T COG5656 101 PEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELF 154 (970)
T ss_pred CchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHH
Confidence 344577788899999999999 8999 9999888886654 45555666666555
No 27
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=85.47 E-value=8.4 Score=43.99 Aligned_cols=155 Identities=12% Similarity=0.120 Sum_probs=98.2
Q ss_pred hHHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHHH-h-----hcCChhHh-hHHHHHHHHHcCCCCCCCCChHHH
Q 001344 115 LDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCG-F-----LLSSPDFR-LHACEFFKLVSPRKGPADASASEF 187 (1096)
Q Consensus 115 ~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~-~-----ll~~~~~R-~~A~ecL~~i~sr~~~~~~~~~~f 187 (1096)
.+..+..-.+-...|+-+..|++..+-.....+++++-|+ . --+.|..| .+++.|+..++.|-+. .-.+..
T Consensus 34 ~~~~~~lr~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~--~~~~~v 111 (319)
T PF08767_consen 34 TPKVRLLRTIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGE--LIQPQV 111 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGG--GCCCCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHH--hhhhhH
Confidence 3444455556688899999999998855444444444431 1 22457888 5678888888876532 122344
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcccc-cccccHHHHHHHHHHhhccchhH
Q 001344 188 ESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIA-REDTILSMYLQQMLGYFQHFKIA 266 (1096)
Q Consensus 188 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~~~-~~~~~l~~~L~~lL~~t~hpsl~ 266 (1096)
..+++.+|...+++..+ + .++-.++...+=++|.++...+...+. -+++.+..++..++--.+|+..+
T Consensus 112 ~~I~~~vf~~Tl~MI~~----------d-~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~ 180 (319)
T PF08767_consen 112 PQILEAVFECTLPMINK----------D-FEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNRE 180 (319)
T ss_dssp HHHHHHHHHHHHHHHSS----------T-SSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHHHHHHHHHh----------h-hhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 56777777765444431 1 122235777777777777555443221 23446777888888899999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 001344 267 LHFQSLLFWLALMRDL 282 (1096)
Q Consensus 267 vs~~~l~~W~~lL~~~ 282 (1096)
++..++..-..++.+.
T Consensus 181 I~~~~L~~l~~ll~~~ 196 (319)
T PF08767_consen 181 ISETGLNILLELLNNV 196 (319)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988888774
No 28
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.83 E-value=1.6e+02 Score=36.88 Aligned_cols=207 Identities=18% Similarity=0.154 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHhhcc----cCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCCh
Q 001344 362 SQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLL----ISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANS 437 (1096)
Q Consensus 362 ~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~l~~~~----~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~ 437 (1096)
+|+|.-..+.+--+....|.+..+.+.+....++.... ++.++..+--+..-++..+=+++..+.+.... +.
T Consensus 515 sNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~----~~ 590 (859)
T KOG1241|consen 515 SNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS----DI 590 (859)
T ss_pred hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc----cc
Confidence 67888777777777777788777655444433332110 01122222122222222333333333442211 11
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH----HHhhhh-hhhcCCCchhHHHHHHHHhhccCCCccCCCCchHH
Q 001344 438 EVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHY----LDALGP-FLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSA 512 (1096)
Q Consensus 438 ~~~~~l~~~l~~Ll~~ll~~~~~dP~l~s~~~~~----l~~l~~-fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~ 512 (1096)
+.....+.+++-+++.. .+...+..-.+.- .+.++. |.+|-|.|.|=.+. .|. +-.-
T Consensus 591 ---~~~~d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~----gL~----------n~~e 652 (859)
T KOG1241|consen 591 ---REVSDQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLM----GLS----------NFQE 652 (859)
T ss_pred ---hhHHHHHHHHHHHHHcC-CccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH----Hhh----------cchH
Confidence 22223344555555543 2333333222222 233333 77766554432222 121 0122
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHh
Q 001344 513 RHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQ 591 (1096)
Q Consensus 513 k~vR~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~~~~~~~q~~~l~~ll~P~~~ 591 (1096)
..|--.|....-++|+.....+.||.+.+.+.+-+.+++..+.+.-|-.....++=|+...+.+ =..+++.+|.-+.+
T Consensus 653 ~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~-F~~Yl~~vm~llq~ 730 (859)
T KOG1241|consen 653 YQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGAD-FEPYLEMVMPLLQQ 730 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHh-HHHHHHHHHHHHHH
Confidence 2455566677778888899999999999988888888887777777777777777776532211 24567777665544
No 29
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.46 E-value=1.1e+02 Score=37.94 Aligned_cols=140 Identities=18% Similarity=0.292 Sum_probs=90.3
Q ss_pred HHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHc
Q 001344 472 LDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQRE 551 (1096)
Q Consensus 472 l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~ 551 (1096)
++.+++|.. |++...+-+-+|..|.+ +..-+|.+|...+.|++.+||..+-|-|..+.+.+.
T Consensus 130 L~GLS~fvT--pdLARDLa~Dv~tLL~s-----------skpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLe----- 191 (877)
T KOG1059|consen 130 LSGLSCIVT--PDLARDLADDVFTLLNS-----------SKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLE----- 191 (877)
T ss_pred ecccccccC--chhhHHHHHHHHHHHhc-----------CchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhcc-----
Confidence 344444443 44555666677776642 122589999999999999999999999998855443
Q ss_pred ccccHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHhHHHHhhhchHhHhhhhcCChHHHHHhccCCccchhhHhHHHHH
Q 001344 552 GRLLRGEHNLLGEAFLVMAS--AAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFF 629 (1096)
Q Consensus 552 ~~L~~~e~~~L~Eal~~i~~--~~~~~~q~~~l~~ll~P~~~~W~~~~~~~~~l~~~~~f~~~~~~~~~~~~~~~~~~~~ 629 (1096)
+-.-...--|+.+|+. ..+| + +++.=...|-+++-+...+|.+..++..|
T Consensus 192 ----DpDp~V~SAAV~VICELArKnP-----------------------k-nyL~LAP~ffkllttSsNNWmLIKiiKLF 243 (877)
T KOG1059|consen 192 ----DPDPSVVSAAVSVICELARKNP-----------------------Q-NYLQLAPLFYKLLVTSSNNWVLIKLLKLF 243 (877)
T ss_pred ----CCCchHHHHHHHHHHHHHhhCC-----------------------c-ccccccHHHHHHHhccCCCeehHHHHHHH
Confidence 3333344445555553 2222 2 25555566777777888899999988888
Q ss_pred HHHHhhhccccccccccCCCCCCcccccchhhhhhhhhhhHHHHHHHHHhc
Q 001344 630 ERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSI 680 (1096)
Q Consensus 630 ~~~lkr~~~~~~~~~s~~~~~~~~~~~~p~~~~~~~iLp~ll~Llr~~h~l 680 (1096)
+.. ++.. |- +...++|+|.-|++.-||+
T Consensus 244 ~aL-----tplE----------------PR--LgKKLieplt~li~sT~Am 271 (877)
T KOG1059|consen 244 AAL-----TPLE----------------PR--LGKKLIEPITELMESTVAM 271 (877)
T ss_pred hhc-----cccC----------------ch--hhhhhhhHHHHHHHhhHHH
Confidence 873 1111 10 2346788888887766653
No 30
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=77.28 E-value=2e+02 Score=35.96 Aligned_cols=83 Identities=18% Similarity=0.317 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHH
Q 001344 445 RIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFI 524 (1096)
Q Consensus 445 ~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~ 524 (1096)
+.+.++|..+..-..+|-.+......+...|+ .....+++++..-++-.|.. +. -+||.+|+.+..
T Consensus 759 ~lidgil~Afqeqtt~d~vml~gfg~V~~~lg---~r~kpylpqi~stiL~rLnn-----ks------a~vRqqaadlis 824 (1172)
T KOG0213|consen 759 RLIDGILYAFQEQTTEDSVMLLGFGTVVNALG---GRVKPYLPQICSTILWRLNN-----KS------AKVRQQAADLIS 824 (1172)
T ss_pred HHHHHHHHHHHhcccchhhhhhhHHHHHHHHh---hccccchHHHHHHHHHHhcC-----CC------hhHHHHHHHHHH
Confidence 45677777777655555544444333333333 33345666666666555542 11 278999999999
Q ss_pred HHHHhc----ccchhhHHHHH
Q 001344 525 RIAKTS----DKSILPHMKDI 541 (1096)
Q Consensus 525 rl~~~~----~~~l~P~l~~i 541 (1096)
+|+.-. -..++-|+..|
T Consensus 825 ~la~Vlktc~ee~~m~~lGvv 845 (1172)
T KOG0213|consen 825 SLAKVLKTCGEEKLMGHLGVV 845 (1172)
T ss_pred HHHHHHHhccHHHHHHHhhHH
Confidence 988773 23366777666
No 31
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=76.87 E-value=1.9e+02 Score=35.40 Aligned_cols=135 Identities=15% Similarity=0.147 Sum_probs=83.2
Q ss_pred CCCCchHHHHHHHHHHhhhh------hh-hcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhc
Q 001344 458 KWTEPPLVVALGHYLDALGP------FL-KYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTS 530 (1096)
Q Consensus 458 ~~~dP~l~s~~~~~l~~l~~------fl-~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~ 530 (1096)
+..|+..+.+.+..++.++. .+ ..+++.+..++.+++......+ ..+|-+|-.+|..|-...
T Consensus 300 ~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~-----------~~lk~r~l~al~~il~~~ 368 (503)
T PF10508_consen 300 ESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS-----------TELKLRALHALASILTSG 368 (503)
T ss_pred CCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCc-----------hHHHHHHHHHHHHHHhcC
Confidence 77899999898888888876 44 4556778889999988765211 156778888888875443
Q ss_pred ccchhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHhHHHHhhhchHhHhhhhcCChHHH
Q 001344 531 DKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAG-IQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGL 609 (1096)
Q Consensus 531 ~~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~~~~-~~~q~~~l~~ll~P~~~~W~~~~~~~~~l~~~~~f 609 (1096)
.. +.-+.+.+.....+.. ++...... .+..+. ..+ ++-|..-+..+-.-....|...++ .+..||
T Consensus 369 ~~---~~~~~i~~~~~~w~~~--~~~~~~~~---~l~~~~-~qPF~elr~a~~~~l~~l~~~~Wg~~~i-----~~~~gf 434 (503)
T PF10508_consen 369 TD---RQDNDILSITESWYES--LSGSPLSN---LLMSLL-KQPFPELRCAAYRLLQALAAQPWGQREI-----CSSPGF 434 (503)
T ss_pred CC---CchHHHHHHHHHHHHH--hcCCchHH---HHHHHh-cCCchHHHHHHHHHHHHHhcCHHHHHHH-----HhCccH
Confidence 22 2223333223322221 22222221 122222 445 567888888888878888876654 345789
Q ss_pred HHhccCCc
Q 001344 610 VRLCSDTS 617 (1096)
Q Consensus 610 ~~~~~~~~ 617 (1096)
++|+-|++
T Consensus 435 ie~lldr~ 442 (503)
T PF10508_consen 435 IEYLLDRS 442 (503)
T ss_pred HhhhcCCC
Confidence 99997543
No 32
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=76.02 E-value=15 Score=46.35 Aligned_cols=77 Identities=26% Similarity=0.308 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhcccchhhHHHHHHHhhcCC-hhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHHHHHhhHhHHHHH
Q 001344 16 QTAALVAEIVRREGINLWQELFPSLVSLSSKG-PIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILPL 94 (1096)
Q Consensus 16 kla~vlveIvkrewp~~Wp~fl~~L~~l~~~~-~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~~L~~~~p~I~~~ 94 (1096)
+.|.++.-|+.-++|..||+++++|+++.+.+ ....+.+++++.-+.-... +-.|-+++ .-.-.|.+..+
T Consensus 104 q~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r------~l~Rsd~l---f~ei~p~L~~~ 174 (947)
T COG5657 104 QNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLR------RLFRSDAL---FLEIAPVLLSI 174 (947)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHh------hhhccHHH---HHHHHHHHHHH
Confidence 55888899999999999999999999987664 5566777777665542221 11222222 22335777777
Q ss_pred HHHHHHH
Q 001344 95 LYSLLER 101 (1096)
Q Consensus 95 ~~~~Le~ 101 (1096)
+++++-.
T Consensus 175 l~pfl~~ 181 (947)
T COG5657 175 LCPFLFS 181 (947)
T ss_pred HHHHHHh
Confidence 7777644
No 33
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.92 E-value=1.7e+02 Score=35.39 Aligned_cols=206 Identities=17% Similarity=0.172 Sum_probs=111.2
Q ss_pred hhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhh-hcCCC
Q 001344 406 QDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFL-KYYPD 484 (1096)
Q Consensus 406 ~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl-~~~~~ 484 (1096)
..|-..-++..-+|.++.++.... +. ..+-..+++++......-...+. +--.+- +.+.+--+ .....
T Consensus 12 KlYekRKaaalelEk~Vk~l~~~~------~~---~~i~k~I~~L~~d~a~s~~~n~r-kGgLiG-lAA~~iaLg~~~~~ 80 (675)
T KOG0212|consen 12 KLYEKRKAAALELEKLVKDLVNNN------DY---DQIRKVISELAGDYAYSPHANMR-KGGLIG-LAAVAIALGIKDAG 80 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC------cH---HHHHHHHHHHHHHhccCcccccc-cchHHH-HHHHHHHhccccHH
Confidence 346667778888888888877632 33 33445566666666643222221 111110 11111111 11122
Q ss_pred chhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHcccccHHH------
Q 001344 485 AVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGE------ 558 (1096)
Q Consensus 485 ~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~~~L~~~e------ 558 (1096)
++.+++..++.++. |....+|.-||.++-.+|+.+...+.+|++.|...+..+.+..+-+...
T Consensus 81 Y~~~iv~Pv~~cf~-----------D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLd 149 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFS-----------DQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLD 149 (675)
T ss_pred HHHHhhHHHHHhcc-----------CccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHH
Confidence 55555555544442 2334789999999999999999999999999977776655531111001
Q ss_pred ------------HHHHHHHHHHHhc---CCCHHHHHHHHHHHhHHHHhhhchHhHhhhhcCCh-HHHHHhccCCc--cch
Q 001344 559 ------------HNLLGEAFLVMAS---AAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEP-LGLVRLCSDTS--FMW 620 (1096)
Q Consensus 559 ------------~~~L~Eal~~i~~---~~~~~~q~~~l~~ll~P~~~~W~~~~~~~~~l~~~-~~f~~~~~~~~--~~~ 620 (1096)
.-.+-+++-++.. ..++..|.-++.|+=- ...--.-+|-. ++.+. .|+.+++||.. .|.
T Consensus 150 RLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~--Lds~P~~~m~~-yl~~~ldGLf~~LsD~s~eVr~ 226 (675)
T KOG0212|consen 150 RLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYV--LDSVPDLEMIS-YLPSLLDGLFNMLSDSSDEVRT 226 (675)
T ss_pred HHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHH--HhcCCcHHHHh-cchHHHHHHHHHhcCCcHHHHH
Confidence 1133344444432 4466667777777521 11111223443 55544 78888888754 233
Q ss_pred hhHhHHHHHHHHHhhh
Q 001344 621 SLFHTVTFFERALKRS 636 (1096)
Q Consensus 621 ~~~~~~~~~~~~lkr~ 636 (1096)
.--.+++.+.+.++..
T Consensus 227 ~~~t~l~~fL~eI~s~ 242 (675)
T KOG0212|consen 227 LTDTLLSEFLAEIRSS 242 (675)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3333355666666654
No 34
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.77 E-value=2.9e+02 Score=37.57 Aligned_cols=164 Identities=10% Similarity=0.091 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHH
Q 001344 362 SQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQL 441 (1096)
Q Consensus 362 ~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~ 441 (1096)
...+.-|.+|=..++.-.-..+-.++.+.++..+.+ +.+..|...||.-+++--++.| ++. .
T Consensus 1012 ~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~-----lt~kewRVReasclAL~dLl~g-------~~~------~ 1073 (1702)
T KOG0915|consen 1012 KKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVN-----LTSKEWRVREASCLALADLLQG-------RPF------D 1073 (1702)
T ss_pred HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh-----ccchhHHHHHHHHHHHHHHHcC-------CCh------H
Confidence 355666666666665544445555666666777655 3566799999987777555554 111 1
Q ss_pred HHHHHHHHHHHHHH-hcCCCCchHH---HHHHHHHHhhhhhh--hcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHH
Q 001344 442 SLSRIFEGLLRQLL-SLKWTEPPLV---VALGHYLDALGPFL--KYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHA 515 (1096)
Q Consensus 442 ~l~~~l~~Ll~~ll-~~~~~dP~l~---s~~~~~l~~l~~fl--~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~v 515 (1096)
.....+.++..++. .+++=.--+| ...+..++-+..-. ..++.-...++..++-++.. ++ + ...|..|
T Consensus 1074 ~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~-~g-i----ms~v~ev 1147 (1702)
T KOG0915|consen 1074 QVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLD-EG-I----MSKVNEV 1147 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhc-cC-c----ccchHHH
Confidence 12222334444443 2333222344 23333333332211 13555566777777666642 23 2 2378899
Q ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHH
Q 001344 516 RLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQ 549 (1096)
Q Consensus 516 R~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~ 549 (1096)
|+-+..++++|++-+++.+.||+..++--+-+++
T Consensus 1148 r~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~ 1181 (1702)
T KOG0915|consen 1148 RRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAY 1181 (1702)
T ss_pred HHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHc
Confidence 9999999999999999999999998854444333
No 35
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=63.45 E-value=1.8e+02 Score=36.02 Aligned_cols=136 Identities=17% Similarity=0.238 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCC--CCchHHHHHHHHHHhhhhhhhcCCCchhHHHHHHHHhhccCCC---ccCCCCchHHHHHHHHHHHH
Q 001344 448 EGLLRQLLSLKW--TEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPF---VFKDPSTNSARHARLQICTS 522 (1096)
Q Consensus 448 ~~Ll~~ll~~~~--~dP~l~s~~~~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~---~~~~~~~~~~k~vR~~A~~~ 522 (1096)
..|++.+++++| .++.++...+..+.. ....++.++..|+.++.+.+...+. ...+......+.+..++..+
T Consensus 72 ~~LV~ail~~~W~~~~~~~v~~y~~Fl~~---Lvsa~~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~~ 148 (563)
T PF05327_consen 72 KQLVEAILSLNWLGRDEDFVEAYIQFLIN---LVSAQPKYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHDA 148 (563)
T ss_dssp HHHHHHHHT-TGGGS-HHHHHHHHHHHHH---HHHH-GGGHHHHHHHHHHGGGS-HHHHHH---------------HHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHHHH
Confidence 467777777777 555554443332222 3456788999999999887652111 00111122344577889999
Q ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHh
Q 001344 523 FIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQ 591 (1096)
Q Consensus 523 f~rl~~~~~~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~~~~~~~q~~~l~~ll~P~~~ 591 (1096)
|.+|.+..|....-....|.+.+.. ..-+...+..+...++-++.-. ++-+...++.+++-+++
T Consensus 149 L~~Il~lvP~s~~~L~~~l~~~FP~----~~~~~~~~~~Yv~NlL~l~~Y~-P~L~~~Il~lIi~rLi~ 212 (563)
T PF05327_consen 149 LQKILRLVPTSPSFLIPILVQNFPH----KRKSKDEHVNYVRNLLRLTEYC-PELRSDILSLIIERLIK 212 (563)
T ss_dssp HHHHHHH-GGGHHHHHHHHHHTS------TTS-HHHHHHHHHHHHHHHCC--GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCcC----CCCChHHHHHHHHHHHHHHcch-HHHHHHHHHHHHHHHHH
Confidence 9999999877765444444444442 2344556667777777787744 66777888887776654
No 36
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=62.67 E-value=1.3e+02 Score=35.27 Aligned_cols=102 Identities=12% Similarity=0.132 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhc---CCCH----H---HHH
Q 001344 510 NSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS---AAGI----Q---QQQ 579 (1096)
Q Consensus 510 ~~~k~vR~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~---~~~~----~---~q~ 579 (1096)
....+++..+|..+.+.+++|.+...||++.+++.+-+++.+-............++..+++ .... + .=.
T Consensus 107 ~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~ 186 (370)
T PF08506_consen 107 GLLEKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQ 186 (370)
T ss_dssp -HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHH
Confidence 35778999999999999999999999999999888888887521222233444444444433 1111 1 113
Q ss_pred HHHHHHhHHHHhhhchHhHhhhhcCChHHHHHhc
Q 001344 580 EVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLC 613 (1096)
Q Consensus 580 ~~l~~ll~P~~~~W~~~~~~~~~l~~~~~f~~~~ 613 (1096)
++++.++=|... ..+.+.+- .-.+|.++++--
T Consensus 187 ~Iie~VI~Pnl~-~~e~D~El-fEddP~EYIrrd 218 (370)
T PF08506_consen 187 QIIEKVIFPNLC-LREEDEEL-FEDDPEEYIRRD 218 (370)
T ss_dssp HHHHHTHHHHHS---HHHHHH-HHHSHHHHHHHH
T ss_pred HHHHHhccCccC-CCHHHHHH-HccCHHHHHHhh
Confidence 444555445542 23322222 445676666653
No 37
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=61.04 E-value=10 Score=26.91 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=19.7
Q ss_pred cHHHHHhhcC--ChhHhhHHHHHHHHHcC
Q 001344 149 IIHGCGFLLS--SPDFRLHACEFFKLVSP 175 (1096)
Q Consensus 149 ll~~L~~ll~--~~~~R~~A~ecL~~i~s 175 (1096)
+++.+..+++ ++++|..|+.||..++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3555544444 48999999999998863
No 38
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=57.59 E-value=4.5e+02 Score=32.39 Aligned_cols=172 Identities=15% Similarity=0.243 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHH
Q 001344 445 RIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFI 524 (1096)
Q Consensus 445 ~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~ 524 (1096)
+.+..+|..+..-..++-++..+...+++.+. ++. .+++++++.-++..|.+.|. +||.+|+.+.-
T Consensus 564 rl~d~il~Afqeq~~t~~~il~~f~tv~vsl~--~r~-kp~l~~ivStiL~~L~~k~p-----------~vR~~aadl~~ 629 (975)
T COG5181 564 RLYDSILNAFQEQDTTVGLILPCFSTVLVSLE--FRG-KPHLSMIVSTILKLLRSKPP-----------DVRIRAADLMG 629 (975)
T ss_pred HHHHHHHHHHHhccccccEEEecccceeeehh--hcc-CcchHHHHHHHHHHhcCCCc-----------cHHHHHHHHHH
Confidence 45677777777656666555544333333322 112 34677777777776753222 57888877665
Q ss_pred HHHHh---cc-cchhhHHHHH-HHHHHHHHHcccccHHHHHHHHHHHHHHhcCCCHHHH----HHHHHHHhHHHHhhhch
Q 001344 525 RIAKT---SD-KSILPHMKDI-ADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQ----QEVLAWLLEPLSQQWMQ 595 (1096)
Q Consensus 525 rl~~~---~~-~~l~P~l~~i-~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~~~~~~~q----~~~l~~ll~P~~~~W~~ 595 (1096)
.|++- +. ..++.++..| ++.+. +.+. .-.-...-|+-.|.|..+...- .+.+-.|. |+.. +
T Consensus 630 sl~~vlk~c~e~~~l~klg~iLyE~lg-----e~yp-EvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~lt-PILr---n 699 (975)
T COG5181 630 SLAKVLKACGETKELAKLGNILYENLG-----EDYP-EVLGSILKAICSIYSVHRFRSMQPPISGILPSLT-PILR---N 699 (975)
T ss_pred HHHHHHHhcchHHHHHHHhHHHHHhcC-----cccH-HHHHHHHHHHHHHhhhhcccccCCchhhcccccc-Hhhh---h
Confidence 55554 22 4455666655 22222 1111 1111333344444443333321 22222222 3322 1
Q ss_pred HhHhhhhcCChHHHHHhccCC-cc-----chh-----hHhHHHHHHHHHhhhcccccc
Q 001344 596 LEWQNNYLSEPLGLVRLCSDT-SF-----MWS-----LFHTVTFFERALKRSGIRKAN 642 (1096)
Q Consensus 596 ~~~~~~~l~~~~~f~~~~~~~-~~-----~~~-----~~~~~~~~~~~lkr~~~~~~~ 642 (1096)
.+ + ++..+-..|+..++.. +. -|+ +.+.+..--+.+||.++..+.
T Consensus 700 kh-~-Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG 755 (975)
T COG5181 700 KH-Q-KVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFG 755 (975)
T ss_pred hh-H-HHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Confidence 11 1 2445556788877732 21 333 333344555777887666543
No 39
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=56.51 E-value=3.8e+02 Score=31.27 Aligned_cols=101 Identities=11% Similarity=0.120 Sum_probs=64.3
Q ss_pred HHHHHHhhcccchhhhHHHHHHHHHHHHHHhccCchHhhHHHHHHHHHHHHHhcCCCCc-hHHHHHHhCCCCCHHHHHHH
Q 001344 947 SAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDP-APRQVLLSLPCITPQDLLAF 1025 (1096)
Q Consensus 947 ~~l~~~~~~~~~~~l~~~~~~~~~~a~l~~L~~~~~~~~~~~l~~L~~~iy~~l~~~~~-~~~~vL~~lP~i~~~~l~~f 1025 (1096)
.++.+..+..++..-..-.+.++++.++++-+...-.+....+-+.++..-..+...|. ..-++|..+-.++++-|...
T Consensus 259 p~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l~p~lV~~L 338 (373)
T PF14911_consen 259 PSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVAELDPQLVISL 338 (373)
T ss_pred HHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCHHHHHHH
Confidence 44555555545455566788999999988877444444555555566655544433443 44778888887888877766
Q ss_pred HHHHhc----------CCChHHHHHHHHHHHH
Q 001344 1026 EDALTK----------TASPREQKQHMRSLLV 1047 (1096)
Q Consensus 1026 ~~~l~~----------~~s~k~qr~~~k~ll~ 1047 (1096)
-..+.. ...+..+|....+|+.
T Consensus 339 ip~i~q~l~~~E~kRG~G~d~~lR~~~~rL~~ 370 (373)
T PF14911_consen 339 IPTIRQSLKDSERKRGLGRDVALRKALSRLLS 370 (373)
T ss_pred HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 666543 2345777887777765
No 40
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=56.22 E-value=1.4e+02 Score=37.24 Aligned_cols=131 Identities=15% Similarity=0.231 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhhcCCCch------------hHHHHHHHHhhccCCCccCCCCchH
Q 001344 444 SRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAV------------GGVISKLFELLTSLPFVFKDPSTNS 511 (1096)
Q Consensus 444 ~~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~~~~~l------------~~VL~klf~~l~~~p~~~~~~~~~~ 511 (1096)
.....++++..++.+...|.........+.+++.+.+..+.-+ ...++-+|-.+..++ .
T Consensus 639 ~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~---------k 709 (980)
T KOG2021|consen 639 LDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFN---------K 709 (980)
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhcc---------c
Confidence 3355677778888788888644333344666777665432221 223344433333222 2
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhc-CCCH-HHHHHHHHHHhHHH
Q 001344 512 ARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS-AAGI-QQQQEVLAWLLEPL 589 (1096)
Q Consensus 512 ~k~vR~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~-~~~~-~~q~~~l~~ll~P~ 589 (1096)
+.+.|.+.-..|.||.--....++||+...++++ ++ +.|..-+.++++.+++ -..+ ..--++++..++|+
T Consensus 710 ~E~iRsavrft~hRmI~~lg~~vlPfipklie~l---L~-----s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppl 781 (980)
T KOG2021|consen 710 FENIRSAVRFTFHRMIPILGNKVLPFIPKLIELL---LS-----STDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPL 781 (980)
T ss_pred cchhHHHHHHHHHHHHHhcchhhhcchHHHHHHH---Hh-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3367889999999999999999999999985544 33 3334456666666655 2222 23456777777777
Q ss_pred Hh
Q 001344 590 SQ 591 (1096)
Q Consensus 590 ~~ 591 (1096)
..
T Consensus 782 l~ 783 (980)
T KOG2021|consen 782 LN 783 (980)
T ss_pred HH
Confidence 64
No 41
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=55.18 E-value=1e+02 Score=33.70 Aligned_cols=102 Identities=18% Similarity=0.233 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhhcCCCchhHHHHHHHHhhccC-CCccCCCCchHHHHHHHHHHH
Q 001344 443 LSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSL-PFVFKDPSTNSARHARLQICT 521 (1096)
Q Consensus 443 l~~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~-p~~~~~~~~~~~k~vR~~A~~ 521 (1096)
|...-..++..|+..=..++..-..++-+++.++...+.+|.++..|+..+.++=... |........-.++.|++.-=.
T Consensus 108 Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~ 187 (239)
T PF11935_consen 108 LEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLKI 187 (239)
T ss_dssp HHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccccccCCccchHHHHHHHHHHHHH
Confidence 3334455666666544444455566677788999999999999999998886643221 110111134467888888878
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHH
Q 001344 522 SFIRIAKTSDKSILPHMKDIADTMA 546 (1096)
Q Consensus 522 ~f~rl~~~~~~~l~P~l~~i~~~i~ 546 (1096)
.|..+-+..+.. ||-+.|.+.+.
T Consensus 188 ~l~~llk~~~~~--~~~~~i~~~L~ 210 (239)
T PF11935_consen 188 FLLHLLKHPASS--PFQGRITQALT 210 (239)
T ss_dssp HHHHHHTSGGGG--GGHHHHHHHHH
T ss_pred HHHHHHCCCCch--hhHHHHHHHHH
Confidence 888777754333 88888766655
No 42
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=53.91 E-value=59 Score=33.39 Aligned_cols=104 Identities=17% Similarity=0.301 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhhcCCcccccCCCchHHHHHHhcCCCCCccccHHHHHHHHHHHhhccCChhhHHHHHHHhhHHHHHHH
Q 001344 749 GVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHC 828 (1096)
Q Consensus 749 ~~re~~y~ilg~~~~l~~~Fy~~~~l~~l~~al~~~~~~l~~~~lr~ll~~~~~plv~~CP~~~~~~~l~plL~~lf~~~ 828 (1096)
.+|-+||..++.+- +..+|.+ ++..+.+.+..++.- +|-.|.+-+..+.-++..||...... +..+..|+=..+
T Consensus 42 elRK~ayE~lytlL--d~~~~~~-~~~~~~~~v~~GL~D--~~DIk~L~~~~l~kl~~~~p~~v~~~-Ld~l~~~l~~~L 115 (169)
T PF08623_consen 42 ELRKAAYECLYTLL--DTCLSRI-DISEFLDRVEAGLKD--EHDIKMLCHLMLSKLAQLAPEEVLQR-LDSLVEPLRKTL 115 (169)
T ss_dssp HHHHHHHHHHHHHH--HSTCSSS--HHHHHHHHHHTTSS---HHHHHHHHHHHHHHHHS-HHHHHHC-CTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHhC-CHHHHHHHHHhhcCC--cHHHHHHHHHHHHHHHHhCHHHHHHH-HHHHHHHHHHHh
Confidence 45666666666552 2235554 355566777666654 67788888888999999999887665 667777776666
Q ss_pred HHHHHhhhHHhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHH
Q 001344 829 QQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTM 872 (1096)
Q Consensus 829 ~~rL~~~W~~i~~~~~~~~~~~E~~ee~llr~LTr~~~~ll~~~ 872 (1096)
..++.. +..++|+=. -.++-|.+++.+..+
T Consensus 116 ~~k~k~-----------~AvkQE~Ek---~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 116 SKKLKE-----------NAVKQEIEK---QQELIRSVLRAVKAL 145 (169)
T ss_dssp H----T-----------TS-HHHHHH---HHHHHHHHHHHHHHH
T ss_pred hccCCC-----------CcccccHHH---HHHHHHHHHHHHHHH
Confidence 666644 344455311 134566777777666
No 43
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=53.77 E-value=1.2e+02 Score=35.80 Aligned_cols=177 Identities=14% Similarity=0.141 Sum_probs=92.2
Q ss_pred cCCchhhhHHHHHHHHHHHHHHHhhcccchhhHHHHHH----Hhhc--CChhHHHHHHHHHHhhhhhhccc-ccC--chH
Q 001344 4 IADPCEEWALKSQTAALVAEIVRREGINLWQELFPSLV----SLSS--KGPIQAELVSMMLRWLPEDITVH-NED--LEG 74 (1096)
Q Consensus 4 ~~~~~e~~~irnkla~vlveIvkrewp~~Wp~fl~~L~----~l~~--~~~~~~El~L~iL~~L~EDv~~~-~ed--l~~ 74 (1096)
+.+......-+..++.+ -.+..-+-...|...+.+|+ +..+ .++..++++|++|+..++--..- .|+ +..
T Consensus 295 ~~g~e~a~~~k~alsel-~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai 373 (516)
T KOG2956|consen 295 ISGSERASERKEALSEL-PKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAI 373 (516)
T ss_pred ccCccchhHHHHHHHHH-HHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHH
Confidence 33442233444444444 34555565677776666544 4443 45788899999999887544321 122 112
Q ss_pred HHHHHHHHHHHhh----HhHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHhhHHHHHHHHHHHHHhccccCCcchhcc--c
Q 001344 75 DRRRLLLRGLTQS----LPEILPLLYSLLERHFGAALSEVGRQQLD-VAKQHAATVTATLNAINAYAEWAPLPDLAK--Y 147 (1096)
Q Consensus 75 ~Rr~~ll~~L~~~----~p~I~~~~~~~Le~~~~~~~~~~~~~~~~-~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~--~ 147 (1096)
.| .+++-+.. +..--+-|..++..|.... +-..-.. .-..-.....++++++...++=++...+-+ +
T Consensus 374 ~K---~Leaa~ds~~~v~~~Aeed~~~~las~~P~~---~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~ 447 (516)
T KOG2956|consen 374 CK---VLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ---CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLP 447 (516)
T ss_pred HH---HHHHHhCCchhHHHHHHHHHHHHHHhhCchh---HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhh
Confidence 22 12221111 1111222333333321100 0000000 000112355688889888988888887643 5
Q ss_pred CcHHHHH--hhcCChhHhhHHHHHHHHHcCCCCCCCCChHHHH
Q 001344 148 GIIHGCG--FLLSSPDFRLHACEFFKLVSPRKGPADASASEFE 188 (1096)
Q Consensus 148 ~ll~~L~--~ll~~~~~R~~A~ecL~~i~sr~~~~~~~~~~f~ 188 (1096)
++.+.+. .-..+..+|..|+=||..++.|=| .++-.|+++
T Consensus 448 diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG-~~~mePhL~ 489 (516)
T KOG2956|consen 448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG-MEEMEPHLE 489 (516)
T ss_pred hhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh-HHhhhhHhh
Confidence 6777663 334558999999999999998864 223344443
No 44
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.27 E-value=4.4e+02 Score=35.10 Aligned_cols=83 Identities=23% Similarity=0.184 Sum_probs=52.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhH
Q 001344 509 TNSARHARLQICTSFIRIAKTSDKSILPH-MKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLE 587 (1096)
Q Consensus 509 ~~~~k~vR~~A~~~f~rl~~~~~~~l~P~-l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~~~~~~~q~~~l~~ll~ 587 (1096)
.++.+.++.+-+..++.|++.--....|. +..+.+....-...+.++--....|.|-+...++....+++...+...+.
T Consensus 106 ~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~s~~~~el~m~Il~lLsEdvf~~ss~~~~q~~~~il~~~~~ 185 (1041)
T KOG2020|consen 106 SETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKTSETVCELSMIILLLLSEEVFDFSSSELTQQKIIILKNLLE 185 (1041)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhcCcccchHHHHHHHHHHHHHhcccchHHHhhhHHHHHHHhh
Confidence 45788999999999999999965555555 55554444311111223334444677777766665556677777777766
Q ss_pred HHHh
Q 001344 588 PLSQ 591 (1096)
Q Consensus 588 P~~~ 591 (1096)
...+
T Consensus 186 ~~f~ 189 (1041)
T KOG2020|consen 186 NEFQ 189 (1041)
T ss_pred HHHH
Confidence 5443
No 45
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=51.83 E-value=45 Score=34.73 Aligned_cols=152 Identities=14% Similarity=0.184 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHh----hcccchhhHHHHH-----------H--HhhcCChhHHHHHHHHHHhhhhhhcccccCchHH
Q 001344 13 LKSQTAALVAEIVRR----EGINLWQELFPSL-----------V--SLSSKGPIQAELVSMMLRWLPEDITVHNEDLEGD 75 (1096)
Q Consensus 13 irnkla~vlveIvkr----ewp~~Wp~fl~~L-----------~--~l~~~~~~~~El~L~iL~~L~EDv~~~~edl~~~ 75 (1096)
+|-.+-.++..++|+ .-...|+.|+|+- + -++..++..+-.++.++..|-|-.-.|+.-....
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 344555667777776 4456899999977 1 1112344555566666666654433221100000
Q ss_pred H-HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHH-
Q 001344 76 R-RRLLLRGLTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGC- 153 (1096)
Q Consensus 76 R-r~~ll~~L~~~~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L- 153 (1096)
+ +..=..++...+..++-.++..|-.. -.++.+..+....|+|+...+.=.|.+.+. .|++..+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~-------------L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~-~~ll~~~v 147 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLA-------------LQAEKSPPVLTQLLKCLAVLVQATPYHRLP-PGLLTEVV 147 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHH-------------HhcccccHHHHHHHHHHHHHHccCChhhcC-HhHHHHHH
Confidence 0 00001122222333322222222111 112234558889999999999999998874 3555443
Q ss_pred ---H--hhcCChhHhhHHHHHHHHHcCCCC
Q 001344 154 ---G--FLLSSPDFRLHACEFFKLVSPRKG 178 (1096)
Q Consensus 154 ---~--~ll~~~~~R~~A~ecL~~i~sr~~ 178 (1096)
. ....|+++|.+++-|+..+++-..
T Consensus 148 ~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 148 TQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 2 334679999999999999988663
No 46
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=49.74 E-value=5.7e+02 Score=31.28 Aligned_cols=200 Identities=16% Similarity=0.100 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHhhcc------cCCCChhhHHHHHhHHH----HHHHHHHhhccCCCC
Q 001344 362 SQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLL------ISTMPAQDLAVMESMQS----ALENVVSAVFDGSNQ 431 (1096)
Q Consensus 362 ~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~l~~~~------~~~~~s~~~~~~ea~~~----~leav~~g~~~~~~~ 431 (1096)
++.|....+.+..+..+.|+...+++....+.+..... ++-+..++-...|-+++ +++||+..-.+
T Consensus 514 ~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~---- 589 (858)
T COG5215 514 SNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRR---- 589 (858)
T ss_pred hhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC----
Confidence 57788888888888888888766655555444433221 11122233333333333 44455442111
Q ss_pred CCCCCh-HHHHHHHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHhhhh-----hhhcCCCchhHHHHHHHHhhccCCCcc
Q 001344 432 FGGANS-EVQLSLSRIFEGLLRQLLSLKWTEPP-LVVALGHYLDALGP-----FLKYYPDAVGGVISKLFELLTSLPFVF 504 (1096)
Q Consensus 432 ~~~~~~-~~~~~l~~~l~~Ll~~ll~~~~~dP~-l~s~~~~~l~~l~~-----fl~~~~~~l~~VL~klf~~l~~~p~~~ 504 (1096)
|. ++.+. +.+|+-+++. .++|. +..-+.+-+++++. |-++-+.|.|-... .|. .
T Consensus 590 ----~ie~v~D~----lm~Lf~r~le--s~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~----aln---~-- 650 (858)
T COG5215 590 ----DIEDVEDQ----LMELFIRILE--STKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTR----ALN---C-- 650 (858)
T ss_pred ----CcccHHHH----HHHHHHHHHh--ccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH----Hhc---c--
Confidence 11 11122 4455545553 33553 44455555666654 44444444332221 121 0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 001344 505 KDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAW 584 (1096)
Q Consensus 505 ~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~~~~~~~q~~~l~~ 584 (1096)
.-+-|-..|....-+|+......+.||.+.+.+.+.+++++....+.-+-+....++=|+...+.+ =+.+|+.
T Consensus 651 ------~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~-F~~YL~~ 723 (858)
T COG5215 651 ------TDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGAN-FESYLDM 723 (858)
T ss_pred ------hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhh-HHHHHHH
Confidence 112344566777778888888999999999999898888875555544555555555555422111 2356666
Q ss_pred HhHHHHh
Q 001344 585 LLEPLSQ 591 (1096)
Q Consensus 585 ll~P~~~ 591 (1096)
+|--..+
T Consensus 724 im~L~qq 730 (858)
T COG5215 724 IMMLFQQ 730 (858)
T ss_pred HHHHHHH
Confidence 6655443
No 47
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=49.47 E-value=6.5e+02 Score=31.85 Aligned_cols=315 Identities=13% Similarity=0.083 Sum_probs=151.3
Q ss_pred HHHHHHHHHhccccCCcchh--cccCcHHHH-H-hhcCChhHhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHH----
Q 001344 125 VTATLNAINAYAEWAPLPDL--AKYGIIHGC-G-FLLSSPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQ---- 196 (1096)
Q Consensus 125 v~~aL~tl~~yl~Wip~~~i--~~~~ll~~L-~-~ll~~~~~R~~A~ecL~~i~sr~~~~~~~~~~f~~~l~~i~~---- 196 (1096)
..+-|++++-.++-++..+- +....+-++ . +-.+|.+.+...+..+.+++...+.- ..- ....++-.+|.
T Consensus 611 laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~-~~y-~r~dilp~ff~~fw~ 688 (1172)
T KOG0213|consen 611 LAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE-PAY-IRFDILPEFFFSFWG 688 (1172)
T ss_pred HHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC-HHH-HhhhhhHHHHhhhhh
Confidence 44556776666666665543 222333333 3 66788999999999999998877531 110 00111111111
Q ss_pred ---------------HHHHHHHHHhhhcCCCC--CCCChhhhHHHHHHHHHHHHhhhhhhcccccccccHHHHHHHHHHh
Q 001344 197 ---------------ILMKVSGEFLYRSGTSA--GAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGY 259 (1096)
Q Consensus 197 ---------------~~~~~~~~~~~~~~~~~--~~~dE~~y~f~k~l~e~L~~lg~~~~~~~~~~~~~l~~~L~~lL~~ 259 (1096)
....+++++......+. .+.-++...|.|..++++......+- ..+-+......++.-+|.-
T Consensus 689 rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg-~~diderleE~lidgil~A 767 (1172)
T KOG0213|consen 689 RRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLG-AADIDERLEERLIDGILYA 767 (1172)
T ss_pred hhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccc-cccccHHHHHHHHHHHHHH
Confidence 11222222211110000 12333344588888877665532221 1111333456688888888
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhhhccccccCCCCCcccCCCCCCCCcchhhhhhhhcchhhhHHHHHHHHHHHhhccc
Q 001344 260 FQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKRE 339 (1096)
Q Consensus 260 t~hpsl~vs~~~l~~W~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~Ll~~~~~rm~~~e 339 (1096)
++|.+.+.+..-.. ..+....+..+.+ ..+|++...+..|+..+.
T Consensus 768 fqeqtt~d~vml~g-fg~V~~~lg~r~k----------------------------------pylpqi~stiL~rLnnks 812 (1172)
T KOG0213|consen 768 FQEQTTEDSVMLLG-FGTVVNALGGRVK----------------------------------PYLPQICSTILWRLNNKS 812 (1172)
T ss_pred HHhcccchhhhhhh-HHHHHHHHhhccc----------------------------------cchHHHHHHHHHHhcCCC
Confidence 89887666532222 2233333222211 345555555556665432
Q ss_pred CCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHccCch----HHHHHHHHHHHHHHhhcccCCCChhhHHHHHhHH
Q 001344 340 KAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPL----VAGVKVSERVMAIINSLLISTMPAQDLAVMESMQ 415 (1096)
Q Consensus 340 ~~~~~~~~~e~~~~Dfd~~~ef~~~Rk~~~~ilr~i~~~~P~----~~~~~l~~~l~~~l~~~~~~~~~s~~~~~~ea~~ 415 (1096)
...|.+..+++..++-+-.. ..+.++-..|-+.++.. .-|.+-
T Consensus 813 ----------------------a~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgee-----------ypEvLg 859 (1172)
T KOG0213|consen 813 ----------------------AKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEE-----------YPEVLG 859 (1172)
T ss_pred ----------------------hhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcc-----------cHHHHH
Confidence 23455555655555443221 22333333333333221 223344
Q ss_pred HHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhhcCCCchhH--HHHHH
Q 001344 416 SALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGG--VISKL 493 (1096)
Q Consensus 416 ~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~~~~~l~~--VL~kl 493 (1096)
+++.|+-.-+.. .+..+.-.+. ..+++-+-.+| .+.+..++-.++..+++.....|++++. -+.-.
T Consensus 860 sILgAikaI~nv--igm~km~pPi-~dllPrltPIL---------knrheKVqen~IdLvg~IadrgpE~v~aREWMRIc 927 (1172)
T KOG0213|consen 860 SILGAIKAIVNV--IGMTKMTPPI-KDLLPRLTPIL---------KNRHEKVQENCIDLVGTIADRGPEYVSAREWMRIC 927 (1172)
T ss_pred HHHHHHHHHHHh--ccccccCCCh-hhhcccchHhh---------hhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHH
Confidence 444443221111 0111111111 11111111111 2234456666778888888888887643 23444
Q ss_pred HHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhc
Q 001344 494 FELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTS 530 (1096)
Q Consensus 494 f~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~ 530 (1096)
|+.+..+ ...+|..||.|..+|--|+++.
T Consensus 928 feLlelL--------kahkK~iRRaa~nTfG~IakaI 956 (1172)
T KOG0213|consen 928 FELLELL--------KAHKKEIRRAAVNTFGYIAKAI 956 (1172)
T ss_pred HHHHHHH--------HHHHHHHHHHHHhhhhHHHHhc
Confidence 5544211 2257889999999999999984
No 48
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.53 E-value=5.4e+02 Score=31.44 Aligned_cols=231 Identities=17% Similarity=0.182 Sum_probs=112.7
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHhhcCChhHHHHHHHHHHhhhhhhccccc-Cc-----hHH-----------HHHHHH
Q 001344 19 ALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNE-DL-----EGD-----------RRRLLL 81 (1096)
Q Consensus 19 ~vlveIvkrewp~~Wp~fl~~L~~l~~~~~~~~El~L~iL~~L~EDv~~~~e-dl-----~~~-----------Rr~~ll 81 (1096)
--++-++|-+-+...+..+..|+.++..+...+......|-+|.-|++...+ +. .+- -|.-+.
T Consensus 109 YNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv 188 (675)
T KOG0212|consen 109 YNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLV 188 (675)
T ss_pred HHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHH
Confidence 3466677888888899999999998876655555556666666666654222 11 111 111111
Q ss_pred HHHHh--hHh--HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchh-ccc-CcHHHHH-
Q 001344 82 RGLTQ--SLP--EILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDL-AKY-GIIHGCG- 154 (1096)
Q Consensus 82 ~~L~~--~~p--~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i-~~~-~ll~~L~- 154 (1096)
.-+.. ..| +.+.++-.++...|. ..+.++ .+++..|=.++..|+.=|..+.- ++. +.++++.
T Consensus 189 ~Wl~~Lds~P~~~m~~yl~~~ldGLf~-----~LsD~s------~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~ 257 (675)
T KOG0212|consen 189 SWLYVLDSVPDLEMISYLPSLLDGLFN-----MLSDSS------DEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVP 257 (675)
T ss_pred HHHHHHhcCCcHHHHhcchHHHHHHHH-----HhcCCc------HHHHHHHHHHHHHHHHHHhcCccccCcccchhhccc
Confidence 11110 011 112222222222221 111112 22333333344444443333322 243 3788873
Q ss_pred -hhcCChhHhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHH
Q 001344 155 -FLLSSPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVS 233 (1096)
Q Consensus 155 -~ll~~~~~R~~A~ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~ 233 (1096)
.-.+++.+|..|+.-+.+++.-.+. +-.. .+..++.. +++-. ..+|.. =.+..+.+++.
T Consensus 258 ~l~ss~~~iq~~al~Wi~efV~i~g~--~~l~----~~s~il~~-------iLpc~-----s~~e~~--~i~~~a~~~n~ 317 (675)
T KOG0212|consen 258 HLQSSEPEIQLKALTWIQEFVKIPGR--DLLL----YLSGILTA-------ILPCL-----SDTEEM--SIKEYAQMVNG 317 (675)
T ss_pred cccCCcHHHHHHHHHHHHHHhcCCCc--chhh----hhhhhhhh-------cccCC-----CCCccc--cHHHHHHHHHH
Confidence 4456699999999999999987742 2221 11222222 11100 011111 22333344443
Q ss_pred hhhhhhccc-ccccccHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 001344 234 LGTSNLHCI-AREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRD 281 (1096)
Q Consensus 234 lg~~~~~~~-~~~~~~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~ 281 (1096)
+....+..- ...+-.+...++.+..++.|...+-...++. |...+-+
T Consensus 318 ~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~-Wi~~l~~ 365 (675)
T KOG0212|consen 318 LLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLN-WIILLYH 365 (675)
T ss_pred HHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHH-HHHHHHh
Confidence 322222110 0011245678888888899998887777766 6655544
No 49
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=45.33 E-value=6.8e+02 Score=30.92 Aligned_cols=37 Identities=14% Similarity=0.040 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhc
Q 001344 9 EEWALKSQTAALVAEIVRREGINLWQELFPSLVSLSS 45 (1096)
Q Consensus 9 e~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~~ 45 (1096)
+..++|-..|..+..+++--+|-+-..|..-|+-+|+
T Consensus 370 ~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~ 406 (975)
T COG5181 370 RSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWE 406 (975)
T ss_pred cceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 4678888899999999999999999999999998885
No 50
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=44.67 E-value=83 Score=35.72 Aligned_cols=69 Identities=20% Similarity=0.276 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCCchHHHHH---H--hCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCC
Q 001344 984 VISADLVGLCREIFIYMCDRDPAPRQVL---L--SLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGN 1052 (1096)
Q Consensus 984 ~~~~~l~~L~~~iy~~l~~~~~~~~~vL---~--~lP~i~~~~l~~f~~~l~~~~s~k~qr~~~k~ll~~~~g~ 1052 (1096)
+.......++...|..+|......-.++ . .+|+.+.+++..+.+++.-..++++..+.|.+++..+.+.
T Consensus 221 ~~f~~F~~~~~~~~~~lR~~~~~il~l~~lm~~s~lp~~~~~~i~~l~~rf~l~~se~~a~~~~~~lI~~s~~~ 294 (311)
T cd05167 221 TPFKWFVELCVRAFLAVRPYMDEIVSLVELMLDSGLPCFRGDTIKNLRQRFAPEKSEREAAEFMLSLIAESYEK 294 (311)
T ss_pred hhHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCchhhhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3455677888888888887776655443 2 5899999999999999988889999999999999988775
No 51
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=43.58 E-value=3.7e+02 Score=27.37 Aligned_cols=136 Identities=18% Similarity=0.142 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHh-cCC
Q 001344 381 LVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLS-LKW 459 (1096)
Q Consensus 381 ~~~~~~l~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~-~~~ 459 (1096)
....+....++.+.+.+. .++-.|.+.. ++.+++..+.. +.+.+....|++.+++ ++.
T Consensus 20 ~~~l~~l~~ri~~LL~s~-------~~~~rw~G~~-Ll~~~~~~~~~-------------e~l~~~~~~W~~~Ll~~L~~ 78 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSK-------SAYSRWAGLC-LLKVTVEQCSW-------------EILLSHGSQWLRALLSILEK 78 (165)
T ss_pred HHHHHHHHHHHHHHhCCC-------ChhhHHHHHH-HHHHHHHHhhH-------------HHHHHHHHHHHHHHHHHHcC
Confidence 456677778888887653 2355675554 44455443211 1222334555555553 233
Q ss_pred CCc-hHHHHHHHHHHhhhhhhhcCCCchhHH----HHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccch
Q 001344 460 TEP-PLVVALGHYLDALGPFLKYYPDAVGGV----ISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSI 534 (1096)
Q Consensus 460 ~dP-~l~s~~~~~l~~l~~fl~~~~~~l~~V----L~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l 534 (1096)
.+| .+....+.++..+..+....|++...+ +.++...+..+.. + ..+...|..+|.++-+.||..+
T Consensus 79 ~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~---~------~~~~~~~l~~L~~ll~~~ptt~ 149 (165)
T PF08167_consen 79 PDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQ---D------SSCPETALDALATLLPHHPTTF 149 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHh---c------cccHHHHHHHHHHHHHHCCccc
Confidence 444 567777777888877777766543322 3333332221101 0 1355689999999999999999
Q ss_pred hhHHHHHHHHHH
Q 001344 535 LPHMKDIADTMA 546 (1096)
Q Consensus 535 ~P~l~~i~~~i~ 546 (1096)
-||...|-..+-
T Consensus 150 rp~~~ki~~~l~ 161 (165)
T PF08167_consen 150 RPFANKIESALL 161 (165)
T ss_pred cchHHHHHHHHH
Confidence 999998855444
No 52
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=43.01 E-value=6.9e+02 Score=30.29 Aligned_cols=107 Identities=18% Similarity=0.069 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhhcCCCchhH-HHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHH
Q 001344 446 IFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGG-VISKLFELLTSLPFVFKDPSTNSARHARLQICTSFI 524 (1096)
Q Consensus 446 ~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~~~~~l~~-VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~ 524 (1096)
.+..-+..++ +.++|.+|+..+- ++.++.+..|+.+.. +++++...+.. ..-.|+..|+.++.
T Consensus 114 ~l~~~v~~ll--~~~~~~VRk~A~~---~l~~i~~~~p~~~~~~~~~~l~~lL~d-----------~~~~V~~~a~~~l~ 177 (526)
T PF01602_consen 114 PLIPDVIKLL--SDPSPYVRKKAAL---ALLKIYRKDPDLVEDELIPKLKQLLSD-----------KDPSVVSAALSLLS 177 (526)
T ss_dssp HHHHHHHHHH--HSSSHHHHHHHHH---HHHHHHHHCHCCHHGGHHHHHHHHTTH-----------SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--cCCchHHHHHHHH---HHHHHhccCHHHHHHHHHHHHhhhccC-----------CcchhHHHHHHHHH
Confidence 3334444444 5888999998765 555566667888776 67777776631 22368889999999
Q ss_pred HHHHhcccchhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhc
Q 001344 525 RIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS 571 (1096)
Q Consensus 525 rl~~~~~~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~ 571 (1096)
.+ +..+....+.+..+...+.++. +..++--+..+...+..++.
T Consensus 178 ~i-~~~~~~~~~~~~~~~~~L~~~l--~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 178 EI-KCNDDSYKSLIPKLIRILCQLL--SDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp HH-HCTHHHHTTHHHHHHHHHHHHH--TCCSHHHHHHHHHHHTTSTS
T ss_pred HH-ccCcchhhhhHHHHHHHhhhcc--cccchHHHHHHHHHHHhccc
Confidence 99 4333332355555555555444 34666666666666665543
No 53
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=40.31 E-value=32 Score=27.71 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHhhhhhhhcCCC----chhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHH
Q 001344 462 PPLVVALGHYLDALGPFLKYYPD----AVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRI 526 (1096)
Q Consensus 462 P~l~s~~~~~l~~l~~fl~~~~~----~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl 526 (1096)
|.+|...++.++. +....++ +++.++..++..|. | +...||..||.+|-+|
T Consensus 1 p~vR~~A~~aLg~---l~~~~~~~~~~~~~~~~~~L~~~L~-------d----~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGR---LAEGCPELLQPYLPELLPALIPLLQ-------D----DDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHC---TTTTTHHHHHHHHHHHHHHHHHHTT-------S----SSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhh---HhcccHHHHHHHHHHHHHHHHHHHc-------C----CCHHHHHHHHHHHhcC
Confidence 4567777776665 3333333 44555555555442 2 1128899999988543
No 54
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=39.49 E-value=2.3e+02 Score=24.80 Aligned_cols=51 Identities=25% Similarity=0.318 Sum_probs=35.6
Q ss_pred CCCCchHHHHHHHHHHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHH
Q 001344 458 KWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAK 528 (1096)
Q Consensus 458 ~~~dP~l~s~~~~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~ 528 (1096)
+.++|.++...+++++.+.. +.++..+.+.+. + ..-.||.+|+.++-++..
T Consensus 10 ~~~~~~vr~~a~~~L~~~~~---------~~~~~~L~~~l~-------d----~~~~vr~~a~~aL~~i~~ 60 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELGD---------PEAIPALIELLK-------D----EDPMVRRAAARALGRIGD 60 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCTH---------HHHHHHHHHHHT-------S----SSHHHHHHHHHHHHCCHH
T ss_pred cCCCHHHHHHHHHHHHHcCC---------HhHHHHHHHHHc-------C----CCHHHHHHHHHHHHHhCC
Confidence 58899999998888884431 245566655552 1 223799999999998853
No 55
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=38.10 E-value=5.2e+02 Score=27.43 Aligned_cols=79 Identities=14% Similarity=0.130 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHH-hcCCCCchHHHHHHHHHHhhhhhhhcC-CCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHH
Q 001344 442 SLSRIFEGLLRQLL-SLKWTEPPLVVALGHYLDALGPFLKYY-PDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQI 519 (1096)
Q Consensus 442 ~l~~~l~~Ll~~ll-~~~~~dP~l~s~~~~~l~~l~~fl~~~-~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A 519 (1096)
.+...+.+++..+. ..+.....+....|.++..++..++.+ .+++..++..+++.+ .+..+-+|..|
T Consensus 46 ~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~-----------~~~~~~i~~~a 114 (228)
T PF12348_consen 46 DFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKL-----------GDSKKFIREAA 114 (228)
T ss_dssp HHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGG-----------G---HHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH-----------ccccHHHHHHH
Confidence 34445554444333 233334457788888899988887765 223444455554433 23566799999
Q ss_pred HHHHHHHHHhcc
Q 001344 520 CTSFIRIAKTSD 531 (1096)
Q Consensus 520 ~~~f~rl~~~~~ 531 (1096)
..++..|++..+
T Consensus 115 ~~~L~~i~~~~~ 126 (228)
T PF12348_consen 115 NNALDAIIESCS 126 (228)
T ss_dssp HHHHHHHHTTS-
T ss_pred HHHHHHHHHHCC
Confidence 999999999865
No 56
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=37.92 E-value=2.8e+02 Score=33.43 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHh
Q 001344 538 MKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQ 591 (1096)
Q Consensus 538 l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~~~~~~~q~~~l~~ll~P~~~ 591 (1096)
+..++....+...+..+.-+-...||++-++-....+..+|-+-|-++|.++.+
T Consensus 388 LnDvL~~a~~~~eket~~WmlL~sfyqarivSh~nTGV~KRmEWLLELMGyIRn 441 (589)
T PF11229_consen 388 LNDVLSTAMQHHEKETVAWMLLHSFYQARIVSHSNTGVLKRMEWLLELMGYIRN 441 (589)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHheeecccccchHHHHHHHHHHHHHHHH
Confidence 344443333333332233344557888775333366667777777777777764
No 57
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=37.04 E-value=23 Score=28.58 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHc
Q 001344 514 HARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQRE 551 (1096)
Q Consensus 514 ~vR~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~ 551 (1096)
.||..|+..|-+++...+..+.|++..++..+..++..
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d 39 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQD 39 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcC
Confidence 58999999999999999999999999998888766653
No 58
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=36.49 E-value=3.4e+02 Score=30.35 Aligned_cols=146 Identities=12% Similarity=0.154 Sum_probs=80.7
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcch---hcccCcHHHH----H--
Q 001344 84 LTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPD---LAKYGIIHGC----G-- 154 (1096)
Q Consensus 84 L~~~~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~---i~~~~ll~~L----~-- 154 (1096)
+.+..|-|.+.+..+++.+. ...-..++.++.++++=++... +..+|+.+.+ .
T Consensus 113 i~~~~~liiP~iL~llDD~~------------------~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~ 174 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDYS------------------PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPC 174 (282)
T ss_pred HHHhhhHHHhhHHHHhcCCC------------------HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHH
Confidence 44556777777777776542 2255667778888888888887 7777755543 1
Q ss_pred -hhcC-------ChhHhhHHHHHHHHHcCCC--CCCCCChHHHHHHHHH-HHHHHHHHHHHHhhhcCCCCCCCChhhhHH
Q 001344 155 -FLLS-------SPDFRLHACEFFKLVSPRK--GPADASASEFESAMHD-VFQILMKVSGEFLYRSGTSAGAIDESEFEF 223 (1096)
Q Consensus 155 -~ll~-------~~~~R~~A~ecL~~i~sr~--~~~~~~~~~f~~~l~~-i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f 223 (1096)
.+++ ...+-..|-.||..++... .+...+...++..+.. |++...... . ..-.+-..-+
T Consensus 175 L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~-------~---~~~~~l~~~l 244 (282)
T PF10521_consen 175 LYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHES-------S---FSYPRLRTVL 244 (282)
T ss_pred hhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceecc-------c---cCchhHHHHH
Confidence 2222 2456678889998886542 1112333444444433 443310000 0 0011122346
Q ss_pred HHHHHHHHHHhhhhhhcccccccccHHHHHHHHHHhhccch
Q 001344 224 AEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFK 264 (1096)
Q Consensus 224 ~k~l~e~L~~lg~~~~~~~~~~~~~l~~~L~~lL~~t~hps 264 (1096)
++.+..++..+|...+. .++..++.+.++..+|.
T Consensus 245 l~~l~~~i~~lGi~~~~-------hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 245 LQQLPPIIDELGISSVK-------HLQRIIPVLSQILENPF 278 (282)
T ss_pred HHHHHHHHHHhccHHHH-------HHHHHHHHHHHHhcCCC
Confidence 67777777777765554 34556666666655553
No 59
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=35.88 E-value=2.6e+02 Score=26.26 Aligned_cols=70 Identities=14% Similarity=0.185 Sum_probs=45.2
Q ss_pred HHHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHh-cccchhhHHHHHHHHHHHHH
Q 001344 471 YLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKT-SDKSILPHMKDIADTMAYLQ 549 (1096)
Q Consensus 471 ~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~-~~~~l~P~l~~i~~~i~~l~ 549 (1096)
++..+..+.+...+.+..+.-||..+|.+. . ..+.+|..|+....-+.+. .++.+.|+++++.-.+-+.+
T Consensus 35 ~l~si~~lI~~~~~~i~~~~pQI~a~L~sa---l------~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 35 ALRSIEELIKLGGSHISSARPQIMACLQSA---L------EIPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---h------CChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc
Confidence 444555556655566777777777766521 1 1226788888888888887 35778888888865555443
No 60
>PTZ00429 beta-adaptin; Provisional
Probab=32.50 E-value=1.2e+03 Score=30.06 Aligned_cols=164 Identities=12% Similarity=0.123 Sum_probs=79.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccchh--hHHHHHHHhh-cCChhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHHHHH
Q 001344 9 EEWALKSQTAALVAEIVRREGINLWQ--ELFPSLVSLS-SKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLT 85 (1096)
Q Consensus 9 e~~~irnkla~vlveIvkrewp~~Wp--~fl~~L~~l~-~~~~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~~L~ 85 (1096)
..+|+|.+++-.+.-+.+. -|+.-+ +|.++|..+. ..++...=.++.+|..+.++-.... ++....-+.+++.+.
T Consensus 152 ~~pYVRKtAalai~Kly~~-~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~ 229 (746)
T PTZ00429 152 PDPYVRKTAAMGLGKLFHD-DMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLP 229 (746)
T ss_pred CCHHHHHHHHHHHHHHHhh-CcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhh
Confidence 3679999999999999764 343322 3444555544 4556666778888888876432100 111111222333333
Q ss_pred hh---Hh-HHHHHHHHHH--HHH-HHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhccc--CcHHHH-Hh
Q 001344 86 QS---LP-EILPLLYSLL--ERH-FGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKY--GIIHGC-GF 155 (1096)
Q Consensus 86 ~~---~p-~I~~~~~~~L--e~~-~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~--~ll~~L-~~ 155 (1096)
.. .+ .|++++.... +.. .....+... ......+..++.+|.+++-.+..-++...+... .+-..+ .+
T Consensus 230 e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~---~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L 306 (746)
T PTZ00429 230 ECNEWGQLYILELLAAQRPSDKESAETLLTRVL---PRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL 306 (746)
T ss_pred cCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH---HHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh
Confidence 22 11 2222221100 000 000000000 000012246888888885555443322222111 121222 23
Q ss_pred hcCChhHhhHHHHHHHHHcCCC
Q 001344 156 LLSSPDFRLHACEFFKLVSPRK 177 (1096)
Q Consensus 156 ll~~~~~R~~A~ecL~~i~sr~ 177 (1096)
..+++++|-.+++.+..++.+.
T Consensus 307 ~ss~~eiqyvaLr~I~~i~~~~ 328 (746)
T PTZ00429 307 SRRDAETQYIVCKNIHALLVIF 328 (746)
T ss_pred hCCCccHHHHHHHHHHHHHHHC
Confidence 4456899999999999998866
No 61
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.03 E-value=1.3e+03 Score=29.53 Aligned_cols=34 Identities=29% Similarity=0.264 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Q 001344 361 FSQYRSRLLELVKFVASNKPLVAGVKVSERVMAI 394 (1096)
Q Consensus 361 f~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~ 394 (1096)
-..||..+...+..++...|+.+...+...++.+
T Consensus 372 ~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fi 405 (948)
T KOG1058|consen 372 NGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFI 405 (948)
T ss_pred chHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHh
Confidence 3799999999999999999999888877666544
No 62
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=30.03 E-value=9.9e+02 Score=28.27 Aligned_cols=130 Identities=15% Similarity=0.147 Sum_probs=84.0
Q ss_pred cccCCcchhcccC-----cHHHHHhhcCChhHhhHHHHHHHHHcCCCCCC------CCChHHH-HHHHHHHHHHHHHHHH
Q 001344 136 AEWAPLPDLAKYG-----IIHGCGFLLSSPDFRLHACEFFKLVSPRKGPA------DASASEF-ESAMHDVFQILMKVSG 203 (1096)
Q Consensus 136 l~Wip~~~i~~~~-----ll~~L~~ll~~~~~R~~A~ecL~~i~sr~~~~------~~~~~~f-~~~l~~i~~~~~~~~~ 203 (1096)
+-|+--+.+.... +++.+..+++++++...|++++..++.-.... ..-..+| |.+...++..++...+
T Consensus 254 ~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~ 333 (415)
T PF12460_consen 254 LIWITKALVMRGHPLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFK 333 (415)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHh
Confidence 4588888885533 45555577888999999999999998752101 0111244 3344444333322222
Q ss_pred HHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcccccccccHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 001344 204 EFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRD 281 (1096)
Q Consensus 204 ~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~~~~~~~~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~ 281 (1096)
+..++....|+..++-++..+....+. +.+...+|++++-...|+..+-..++.....++++
T Consensus 334 ----------~~~~~~k~~yL~ALs~ll~~vP~~vl~------~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 334 ----------EADDEIKSNYLTALSHLLKNVPKSVLL------PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred ----------hcChhhHHHHHHHHHHHHhhCCHHHHH------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 112235567888888777766544432 36788999999999999998888888887777765
No 63
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.62 E-value=1.3e+03 Score=29.57 Aligned_cols=94 Identities=10% Similarity=0.131 Sum_probs=54.1
Q ss_pred CCCCchHHHHHHHHHHhhhhhhhcC----------CCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHH
Q 001344 458 KWTEPPLVVALGHYLDALGPFLKYY----------PDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIA 527 (1096)
Q Consensus 458 ~~~dP~l~s~~~~~l~~l~~fl~~~----------~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~ 527 (1096)
..+.+.+..+..||++-|+-++-+. .+.+-.++++++..-. ++ ...+..|-+++.||.
T Consensus 476 ~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~----------s~--~~tk~yal~Al~KLS 543 (866)
T KOG1062|consen 476 DISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHS----------SD--STTKGYALTALLKLS 543 (866)
T ss_pred hhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhcc----------ch--HHHHHHHHHHHHHHH
Confidence 3456667889999999999876552 2334445555533211 11 356779999999999
Q ss_pred HhcccchhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHH
Q 001344 528 KTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFL 567 (1096)
Q Consensus 528 ~~~~~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~ 567 (1096)
...+.. .+-++.+ |.....+-.+.-++|..=|+++.
T Consensus 544 sr~~s~-~~ri~~l---I~~~~~s~~~elQQRa~E~~~l~ 579 (866)
T KOG1062|consen 544 SRFHSS-SERIKQL---ISSYKSSLDTELQQRAVEYNALF 579 (866)
T ss_pred hhcccc-HHHHHHH---HHHhcccccHHHHHHHHHHHHHH
Confidence 986655 3333333 22222222344444545555554
No 64
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=28.30 E-value=2.5e+02 Score=31.66 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHhcCCCCchHHHHH-----HhCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCC
Q 001344 985 ISADLVGLCREIFIYMCDRDPAPRQVL-----LSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGN 1052 (1096)
Q Consensus 985 ~~~~l~~L~~~iy~~l~~~~~~~~~vL-----~~lP~i~~~~l~~f~~~l~~~~s~k~qr~~~k~ll~~~~g~ 1052 (1096)
.......+|...|..+|......-.++ ..+|+.+.+++..+.+++.=..|+.+-+..|.++++...+.
T Consensus 200 ~f~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~~~~i~~l~~r~~l~~s~~~a~~~~~~lI~~s~~~ 272 (289)
T cd00893 200 DFKKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPCFRGSTIKKLKERLCLNMSEKEAINTVMKKIDSSYNS 272 (289)
T ss_pred hHHHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhh
Confidence 345677788888888887777665554 25789999999999999987889999999999999988774
No 65
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=28.21 E-value=2e+03 Score=31.24 Aligned_cols=57 Identities=9% Similarity=0.081 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHhhcc---cchhhHHHHHHHhhc-CChhHHHHHHHHHHhhhhhhcc
Q 001344 11 WALKSQTAALVAEIVRREGI---NLWQELFPSLVSLSS-KGPIQAELVSMMLRWLPEDITV 67 (1096)
Q Consensus 11 ~~irnkla~vlveIvkrewp---~~Wp~fl~~L~~l~~-~~~~~~El~L~iL~~L~EDv~~ 67 (1096)
.-+|..+-+++..|+..-.. ++|++++.=|-..++ ..+...+++..++..+..|-+.
T Consensus 1197 ~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~ 1257 (1780)
T PLN03076 1197 VEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFP 1257 (1780)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhh
Confidence 36788888888888776443 699999987776653 4477788888888888877553
No 66
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=28.15 E-value=4.1e+02 Score=25.13 Aligned_cols=67 Identities=15% Similarity=0.244 Sum_probs=40.4
Q ss_pred HHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhc-ccchhhHHHHHHHHHHH
Q 001344 472 LDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTS-DKSILPHMKDIADTMAY 547 (1096)
Q Consensus 472 l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~-~~~l~P~l~~i~~~i~~ 547 (1096)
+.++..+.+-..+.+...+-||..+|.+- . +.+++|..|++...-+.+.- ...+.|.++++.-.+-+
T Consensus 36 i~ai~~lI~~~g~~i~~a~pQI~acL~sa---L------~~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~~ 103 (107)
T smart00802 36 LRSIGFLIKLMGKHISSALPQIMACLQSA---L------EIPELRSLALRCWHVLIKTLKEEELGPLLDQIFAAILP 103 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h------CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 33444444444455666666776666521 1 23358889999888888874 45677777776544443
No 67
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=27.61 E-value=21 Score=18.19 Aligned_cols=7 Identities=29% Similarity=1.160 Sum_probs=5.5
Q ss_pred hhccCCh
Q 001344 804 MVKFCPL 810 (1096)
Q Consensus 804 lv~~CP~ 810 (1096)
+|.|||.
T Consensus 2 ~i~nCP~ 8 (9)
T PF00220_consen 2 YIRNCPI 8 (9)
T ss_pred ccccCCC
Confidence 6789994
No 68
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=27.41 E-value=6.9e+02 Score=25.62 Aligned_cols=138 Identities=15% Similarity=0.096 Sum_probs=77.1
Q ss_pred hhhhHHHHhcCcCchhHHHHHHHhhhcccchhhhHHHH-HhHHHHHHHhhcccchhhhHHHHHHHHHHHHHHhccCchHh
Q 001344 906 SNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVS-SFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAV 984 (1096)
Q Consensus 906 ~~~l~~~~l~~~~i~~~~l~~~~~~l~w~Dt~~~~ka~-~~~~~l~~~~~~~~~~~l~~~~~~~~~~a~l~~L~~~~~~~ 984 (1096)
...|+..+.+.+++++|.+.....+|.=+| ..+++.+ ....-|+...+. . +-..+|...+..|.++. .+
T Consensus 9 i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~-~~VR~~al~~Ls~Li~~d~i----k----~k~~l~~~~l~~l~D~~-~~ 78 (178)
T PF12717_consen 9 IIALGDLCIRYPNLVEPYLPNLYKCLRDED-PLVRKTALLVLSHLILEDMI----K----VKGQLFSRILKLLVDEN-PE 78 (178)
T ss_pred HHHHHHHHHhCcHHHHhHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHcCce----e----ehhhhhHHHHHHHcCCC-HH
Confidence 356888899999999999999999986333 2455544 323333321111 1 13444566666665553 33
Q ss_pred hHHHHHHHHHHHHHhcCCC--CchHHHHHHhCCC---------CCHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhhcCC
Q 001344 985 ISADLVGLCREIFIYMCDR--DPAPRQVLLSLPC---------ITPQDLLAFEDALTKTAS-PREQKQHMRSLLVLGTGN 1052 (1096)
Q Consensus 985 ~~~~l~~L~~~iy~~l~~~--~~~~~~vL~~lP~---------i~~~~l~~f~~~l~~~~s-~k~qr~~~k~ll~~~~g~ 1052 (1096)
..+-+...+.++.....|. +...-+++..+.+ .+.++-....+.|.+.-+ +|++-.++.||...+.+.
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~~~~~ 158 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQRFLNA 158 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 4443444444443332221 1222333333332 455566666666666555 888888888887766554
Q ss_pred c
Q 001344 1053 N 1053 (1096)
Q Consensus 1053 ~ 1053 (1096)
.
T Consensus 159 ~ 159 (178)
T PF12717_consen 159 V 159 (178)
T ss_pred c
Confidence 3
No 69
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=27.20 E-value=1.1e+03 Score=27.70 Aligned_cols=59 Identities=12% Similarity=-0.012 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhhhhhhcccccccccHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 001344 222 EFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRD 281 (1096)
Q Consensus 222 ~f~k~l~e~L~~lg~~~~~~~~~~~~~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~ 281 (1096)
+.++.-+..++.+...-...+.=...+. .-++-++.++++|...+....++....+++-
T Consensus 212 ~~l~~s~~ai~~~LrsW~GLl~l~~~~~-~~lksLv~~L~~p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 212 ERLQASAKAISTLLRSWPGLLYLSMNDF-RGLKSLVDSLRLPNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred HHHHHHHHHHHHHHhcCCceeeeecCCc-hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 4667777776666332221110001122 4467788889999999999999987777764
No 70
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=26.48 E-value=1.3e+02 Score=34.97 Aligned_cols=73 Identities=15% Similarity=0.245 Sum_probs=57.5
Q ss_pred HhhHHHHHHHHHHHHHhcCCCCchHHHHH---H--hCCCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCchh
Q 001344 983 AVISADLVGLCREIFIYMCDRDPAPRQVL---L--SLPCIT-PQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNNLK 1055 (1096)
Q Consensus 983 ~~~~~~l~~L~~~iy~~l~~~~~~~~~vL---~--~lP~i~-~~~l~~f~~~l~~~~s~k~qr~~~k~ll~~~~g~~l~ 1055 (1096)
.+.....-.+|...|..+|......-.++ . .+|+++ .++++.+.++|.-..|+.+....|++++..+...+.+
T Consensus 271 s~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~~sgip~~~~~~~i~~l~~~~~l~~se~ea~~~f~~~i~~s~~~~~~ 349 (361)
T cd05174 271 SEKFERFRGYCEQAYKILRRHGTLFLHLFALMKAAGLPELNCSKDIQYLKDSLALGKTEEEALKHFRVKFNEALRESWK 349 (361)
T ss_pred CchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCccCchhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCch
Confidence 34455677888888888887777655543 3 689886 4789999999988889999999999999988876644
No 71
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=26.05 E-value=2.4e+02 Score=26.12 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=20.0
Q ss_pred HHHHHHHHhHHHHhhhchHhHhh
Q 001344 578 QQEVLAWLLEPLSQQWMQLEWQN 600 (1096)
Q Consensus 578 q~~~l~~ll~P~~~~W~~~~~~~ 600 (1096)
-.+++..|++|+..-..+++++.
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rV 43 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRV 43 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHH
Confidence 57899999999999888888775
No 72
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=25.40 E-value=2.3e+02 Score=32.90 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHHHhcCCCCchHHHHH-----HhCCCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCC
Q 001344 984 VISADLVGLCREIFIYMCDRDPAPRQVL-----LSLPCIT-PQDLLAFEDALTKTASPREQKQHMRSLLVLGTGN 1052 (1096)
Q Consensus 984 ~~~~~l~~L~~~iy~~l~~~~~~~~~vL-----~~lP~i~-~~~l~~f~~~l~~~~s~k~qr~~~k~ll~~~~g~ 1052 (1096)
+.......+|...|..+|......-.++ ..+|+++ .+++..+.+++.-..++.+....|++++....+.
T Consensus 265 ~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~~~~~i~~l~~r~~l~~s~~ea~~~~~~~I~~s~~s 339 (353)
T cd05166 265 QRFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELSKIQDLKYVRDALRPQLTDAEATIQFTKMIQSSLGS 339 (353)
T ss_pred chHhHHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccCchhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 4556677788888888887777665543 2588888 7799999999998889999999999999988754
No 73
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=25.33 E-value=7.8e+02 Score=26.04 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=35.7
Q ss_pred cCCCCchHHHHHHHHHHhhhhhhhcCCCc------hhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhc
Q 001344 457 LKWTEPPLVVALGHYLDALGPFLKYYPDA------VGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTS 530 (1096)
Q Consensus 457 ~~~~dP~l~s~~~~~l~~l~~fl~~~~~~------l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~ 530 (1096)
.+.+.|.+|...+.++..+..-+....+. +..++..+-.++ .|+...||..|=..|..+.+..
T Consensus 140 ~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l-----------~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 140 LKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLL-----------SDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp TT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHH-----------TSS-HHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHC-----------CCCCHHHHHHHHHHHHHHHHHC
Confidence 48889999988777666654433311122 233333333333 2244578888888888887775
Q ss_pred ccch
Q 001344 531 DKSI 534 (1096)
Q Consensus 531 ~~~l 534 (1096)
|+.-
T Consensus 209 ~~~a 212 (228)
T PF12348_consen 209 PERA 212 (228)
T ss_dssp -HHH
T ss_pred CHhh
Confidence 5443
No 74
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=25.19 E-value=7.7e+02 Score=25.45 Aligned_cols=124 Identities=12% Similarity=0.115 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhhhh-hh---hcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHH
Q 001344 447 FEGLLRQLLSLKWTEPPLVVALGHYLDALGP-FL---KYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTS 522 (1096)
Q Consensus 447 l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~-fl---~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~ 522 (1096)
++.++-.|++.+...--...+.+++++.... .+ +..|.-+. +-|... .++--.+|-+-
T Consensus 4 ikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~---d~Ils~---------------~~~e~~kA~~I 65 (174)
T PF04510_consen 4 IKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELS---DCILSL---------------SENEPVKAFHI 65 (174)
T ss_pred hHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHH---HHHHHh---------------hccchHHHHHH
Confidence 5567777776655544344444444444333 22 22344443 333110 01223589999
Q ss_pred HHHHH-HhcccchhhHHHHHHHHHHHHHHcc-cccHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHhHH
Q 001344 523 FIRIA-KTSDKSILPHMKDIADTMAYLQREG-RLLRGEHN-LLGEAFLVMASAAGIQQQQEVLAWLLEP 588 (1096)
Q Consensus 523 f~rl~-~~~~~~l~P~l~~i~~~i~~l~~~~-~L~~~e~~-~L~Eal~~i~~~~~~~~q~~~l~~ll~P 588 (1096)
|+.+. ..+...+.|+++.+...+.+.+... ...-.+-+ +|.-|+-..++-.+...+.+++..|+.-
T Consensus 66 F~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~ 134 (174)
T PF04510_consen 66 FICLPMPLYGEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPK 134 (174)
T ss_pred HHhCCchhhhhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 99999 6678889999999987777555443 22222223 4444443334433333344555555443
No 75
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=25.00 E-value=4.3e+02 Score=24.10 Aligned_cols=52 Identities=21% Similarity=0.083 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhccccCCc--chhcccCcHHHHHhhc--CChhHhhHHHHHHHHHc
Q 001344 123 ATVTATLNAINAYAEWAPL--PDLAKYGIIHGCGFLL--SSPDFRLHACEFFKLVS 174 (1096)
Q Consensus 123 ~~v~~aL~tl~~yl~Wip~--~~i~~~~ll~~L~~ll--~~~~~R~~A~ecL~~i~ 174 (1096)
.++..++.++......-+. ..+.+.++++.+..++ .+.++|..|+.+|..++
T Consensus 64 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 64 EVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 4677778887777776543 2335677888874333 34789999999998775
No 76
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=22.37 E-value=1.5e+03 Score=27.93 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhhcC-CC---chhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHH
Q 001344 448 EGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYY-PD---AVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSF 523 (1096)
Q Consensus 448 ~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~~-~~---~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f 523 (1096)
..+++..+..+ +.|.+...++.++.+|.-|...+ |+ ++.+.+..++..+. . .-|+||.++|..+
T Consensus 48 lr~vn~IL~~K-k~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~e-----s------kdk~VR~r~lqil 115 (885)
T COG5218 48 LRVVNTILACK-KNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTE-----S------KDKKVRKRSLQIL 115 (885)
T ss_pred HHHHHHhhccc-cCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhccc-----C------cchhHHHHHHHHH
Confidence 34445555432 34667777777777777665443 32 44444444422221 1 2468999999999
Q ss_pred HHHHHhcccchhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhc
Q 001344 524 IRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS 571 (1096)
Q Consensus 524 ~rl~~~~~~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~ 571 (1096)
.++..-... .=+.+++.+..-+. .++-+.|...=.||+.+++-
T Consensus 116 a~~~d~v~e----IDe~l~N~L~ekl~-~R~~DRE~~VR~eAv~~L~~ 158 (885)
T COG5218 116 ALLSDVVRE----IDEVLANGLLEKLS-ERLFDREKAVRREAVKVLCY 158 (885)
T ss_pred HHHHHhcch----HHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHH
Confidence 988876322 22222222221111 24667788888899988875
No 77
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=21.91 E-value=1.6e+03 Score=27.84 Aligned_cols=182 Identities=12% Similarity=0.099 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHccCchHHHHH-HHHHHHHHHhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHH
Q 001344 362 SQYRSRLLELVKFVASNKPLVAGVK-VSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQ 440 (1096)
Q Consensus 362 ~~~Rk~~~~ilr~i~~~~P~~~~~~-l~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~ 440 (1096)
...|....+..+.+.+.-+..+..- +...+.++... .|..-.+...++++...-.+.-.. .-.
T Consensus 230 ~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~---------kWrtK~aslellg~m~~~ap~qLs-------~~l 293 (569)
T KOG1242|consen 230 NKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA---------KWRTKMASLELLGAMADCAPKQLS-------LCL 293 (569)
T ss_pred hhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH---------hhhhHHHHHHHHHHHHHhchHHHH-------HHH
Confidence 3556667777777766656555433 33333333322 255555666666665442222110 112
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhhcCCCchhHHHHHHHHhhccCCC-----------------c
Q 001344 441 LSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPF-----------------V 503 (1096)
Q Consensus 441 ~~l~~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~-----------------~ 503 (1096)
+.+++.+.+.+ ..++|.++.--..++..++++.... .+.+.+.++.+++.- |. .
T Consensus 294 p~iiP~lsevl------~DT~~evr~a~~~~l~~~~svidN~--dI~~~ip~Lld~l~d-p~~~~~e~~~~L~~ttFV~~ 364 (569)
T KOG1242|consen 294 PDLIPVLSEVL------WDTKPEVRKAGIETLLKFGSVIDNP--DIQKIIPTLLDALAD-PSCYTPECLDSLGATTFVAE 364 (569)
T ss_pred hHhhHHHHHHH------ccCCHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHHHhcC-cccchHHHHHhhcceeeeee
Confidence 34444444443 7889999998888888888877653 144555555444431 11 0
Q ss_pred cCCC------------CchHHHHHHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Q 001344 504 FKDP------------STNSARHARLQICTSFIRIAKTS--DKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVM 569 (1096)
Q Consensus 504 ~~~~------------~~~~~k~vR~~A~~~f~rl~~~~--~~~l~P~l~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~i 569 (1096)
+..| ..+.....+++++-.+=.+|+.- |+.+.||+..++..++..+... .+.-|-..+-|++.+
T Consensus 365 V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~--~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 365 VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA--VPEVRAVAARALGAL 442 (569)
T ss_pred ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC--ChhHHHHHHHHHHHH
Confidence 1111 11122345678888888899886 8889999999987777555432 344445555566555
Q ss_pred h
Q 001344 570 A 570 (1096)
Q Consensus 570 ~ 570 (1096)
.
T Consensus 443 ~ 443 (569)
T KOG1242|consen 443 L 443 (569)
T ss_pred H
Confidence 4
No 78
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.71 E-value=1.8e+03 Score=28.61 Aligned_cols=86 Identities=15% Similarity=0.180 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHh-cCCCCchHHHHHHHHHHhhhhhhhc-CCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHH
Q 001344 445 RIFEGLLRQLLS-LKWTEPPLVVALGHYLDALGPFLKY-YPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTS 522 (1096)
Q Consensus 445 ~~l~~Ll~~ll~-~~~~dP~l~s~~~~~l~~l~~fl~~-~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~ 522 (1096)
++...+++.++. .+.+|...|.--+-.++.+...+.- ..+++..|+.+|....+ ++ ..--|||+|...
T Consensus 843 ~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~--~d--------~s~~vRRaAv~l 912 (982)
T KOG4653|consen 843 KYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLET--TD--------GSVLVRRAAVHL 912 (982)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHc--cC--------CchhhHHHHHHH
Confidence 445567777774 3544556677777778887775543 24577888888866543 22 223588899888
Q ss_pred HHHHHHhcccchhhHHHH
Q 001344 523 FIRIAKTSDKSILPHMKD 540 (1096)
Q Consensus 523 f~rl~~~~~~~l~P~l~~ 540 (1096)
+.-+=..-...++|.+..
T Consensus 913 i~~lL~~tg~dlLpilr~ 930 (982)
T KOG4653|consen 913 LAELLNGTGEDLLPILRL 930 (982)
T ss_pred HHHHHhccchhhHHHHHH
Confidence 877777777788886633
No 79
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=21.23 E-value=3.6e+02 Score=30.47 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCCchHHHHH---H---hCCCCC--HHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCC
Q 001344 984 VISADLVGLCREIFIYMCDRDPAPRQVL---L---SLPCIT--PQDLLAFEDALTKTASPREQKQHMRSLLVLGTGN 1052 (1096)
Q Consensus 984 ~~~~~l~~L~~~iy~~l~~~~~~~~~vL---~---~lP~i~--~~~l~~f~~~l~~~~s~k~qr~~~k~ll~~~~g~ 1052 (1096)
+.......+|...|..+|........++ . .+|..+ .+++..+.+++.-..++++-...|.+++..+.+.
T Consensus 200 ~~~~~F~~~c~~~~~~LR~~~~~il~ll~~m~~~~~lp~f~~~~~~i~~l~~r~~l~~se~~a~~~~~~lI~~s~~~ 276 (293)
T cd05168 200 DLFNYFKKLFLKGFMALRKHVDRIILLVEIMQSDSKLPCFKAGEFTIQQLRDRFMLNLTEEQLEVFVDELINQSLDN 276 (293)
T ss_pred chhHHHHHHHHHHHHHHHhchHHHHHHHHHHccCCCCccccCchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3456778888888888888777665543 3 467777 7899999999988889999999999999998875
No 80
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=21.02 E-value=2.4e+03 Score=29.61 Aligned_cols=73 Identities=14% Similarity=0.090 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhhhhhhc------CC---CchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccch
Q 001344 464 LVVALGHYLDALGPFLKY------YP---DAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSI 534 (1096)
Q Consensus 464 l~s~~~~~l~~l~~fl~~------~~---~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l 534 (1096)
.....+.+++.|+||+.- .+ ++.....+++|.+|.++. +. ..-.+|++|...+-++|-.+|..+
T Consensus 1188 ~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~---k~----~~~~lR~~al~~Lg~~ci~hp~l~ 1260 (1692)
T KOG1020|consen 1188 KLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFS---KD----KDGELRRKALINLGFICIQHPSLF 1260 (1692)
T ss_pred HHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHH---Hh----hhhHHHHHHHHHHHHHHhhCchhh
Confidence 345566788999986642 11 234467888888776431 11 224799999999999999999886
Q ss_pred h-hHHHHHHH
Q 001344 535 L-PHMKDIAD 543 (1096)
Q Consensus 535 ~-P~l~~i~~ 543 (1096)
. +++..+++
T Consensus 1261 ~~~~v~nly~ 1270 (1692)
T KOG1020|consen 1261 TSREVLNLYD 1270 (1692)
T ss_pred hhHHHHHHHH
Confidence 5 66666643
No 81
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=20.77 E-value=4.9e+02 Score=32.21 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHHHHHhh---cCChhHHHHHHHHHHhh---------hhhhcccccCc----hHH-HH
Q 001344 15 SQTAALVAEIVRREGINLWQELFPSLVSLS---SKGPIQAELVSMMLRWL---------PEDITVHNEDL----EGD-RR 77 (1096)
Q Consensus 15 nkla~vlveIvkrewp~~Wp~fl~~L~~l~---~~~~~~~El~L~iL~~L---------~EDv~~~~edl----~~~-Rr 77 (1096)
+-.|+++-.|-+.-....=.-|+.+|-.+- +..+...++.++=+|.| .|+.+.|.+.+ ... |+
T Consensus 65 ~l~AellG~lS~~rF~sVsdRF~~eL~~~~~~~~~~~~~~~~li~GMr~lrlk~~p~e~~e~s~~Fm~~l~~~f~~~h~~ 144 (552)
T PF14222_consen 65 DLFAELLGVLSEIRFVSVSDRFIAELEKLRKDSNDAESKIELLIMGMRYLRLKMYPEEAFEESAEFMQSLAKFFLEAHKK 144 (552)
T ss_pred HHHHHHHHHHHhhhChHHHHHHHHHHHHhcccCCchHHHHHHHHhhcceeeecCCCHHHHHHHHHHHHHHHHHHHhcchh
Q ss_pred HHHHHHHHhhHhHHH-------------HHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccc-cCCcch
Q 001344 78 RLLLRGLTQSLPEIL-------------PLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAE-WAPLPD 143 (1096)
Q Consensus 78 ~~ll~~L~~~~p~I~-------------~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~-Wip~~~ 143 (1096)
++++.++++.+.+|+ +.|.+.++..+.....-......-.+.-....+..|+.-=.-|+. |.+
T Consensus 145 ~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~khw~~afPL~t~lLCvS~~e~F~~~W~~--- 221 (552)
T PF14222_consen 145 SDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKPKHWNVAFPLVTTLLCVSPKEFFLSNWLP--- 221 (552)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHhcCcHHHHHHHHHH---
Q ss_pred hcccCcHHHHHhhcCChhHhhHHHHHHHHHc
Q 001344 144 LAKYGIIHGCGFLLSSPDFRLHACEFFKLVS 174 (1096)
Q Consensus 144 i~~~~ll~~L~~ll~~~~~R~~A~ecL~~i~ 174 (1096)
++++.+...+.+.+.|..|++||..++
T Consensus 222 ----~~i~~~~~klKdk~~r~~~l~~l~RLl 248 (552)
T PF14222_consen 222 ----SLIESLISKLKDKETRPVALECLSRLL 248 (552)
T ss_pred ----HHHHHHHhhcCChhhhHHHHHHHHHHH
No 82
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=20.67 E-value=1.7e+02 Score=35.84 Aligned_cols=80 Identities=19% Similarity=0.322 Sum_probs=52.5
Q ss_pred hhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHccc
Q 001344 474 ALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGR 553 (1096)
Q Consensus 474 ~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~~~ 553 (1096)
-+++|+++.|++-...++.++.... | ....+|.+|.-.|-.+|+..+. |+..|++.+.||+.+++
T Consensus 45 ~I~kffk~FP~l~~~Ai~a~~DLcE-------D----ed~~iR~~aik~lp~~ck~~~~----~v~kvaDvL~QlL~tdd 109 (556)
T PF05918_consen 45 FIPKFFKHFPDLQEEAINAQLDLCE-------D----EDVQIRKQAIKGLPQLCKDNPE----HVSKVADVLVQLLQTDD 109 (556)
T ss_dssp HHHHHHCC-GGGHHHHHHHHHHHHT------------SSHHHHHHHHHHGGGG--T--T-----HHHHHHHHHHHTT---
T ss_pred HHHHHHhhChhhHHHHHHHHHHHHh-------c----ccHHHHHHHHHhHHHHHHhHHH----HHhHHHHHHHHHHhccc
Confidence 3567999999999999999988652 1 1236999999999999998544 45566666777776543
Q ss_pred ccHHHHHHHHHHHHHHh
Q 001344 554 LLRGEHNLLGEAFLVMA 570 (1096)
Q Consensus 554 L~~~e~~~L~Eal~~i~ 570 (1096)
..|......+|..+-
T Consensus 110 --~~E~~~v~~sL~~ll 124 (556)
T PF05918_consen 110 --PVELDAVKNSLMSLL 124 (556)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHH
Confidence 457777777775553
No 83
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=20.16 E-value=1.5e+03 Score=27.12 Aligned_cols=30 Identities=10% Similarity=0.325 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhcc-cchhhHHHHHH
Q 001344 513 RHARLQICTSFIRIAKTSD-KSILPHMKDIA 542 (1096)
Q Consensus 513 k~vR~~A~~~f~rl~~~~~-~~l~P~l~~i~ 542 (1096)
..||..|.+-|+-|....+ +.|.||++++-
T Consensus 462 S~VRKtaVfCLVamv~~vG~~~mePhL~~Lt 492 (516)
T KOG2956|consen 462 STVRKTAVFCLVAMVNRVGMEEMEPHLEQLT 492 (516)
T ss_pred HHhhhhHHHhHHHHHHHHhHHhhhhHhhhcc
Confidence 3799999999999999988 99999999983
No 84
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=20.01 E-value=1.3e+03 Score=27.42 Aligned_cols=89 Identities=18% Similarity=0.318 Sum_probs=49.9
Q ss_pred HHHhhccCCCCCCCCCh--HHHHHHH----HHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhhhhcCCCchhHHHHH--
Q 001344 421 VVSAVFDGSNQFGGANS--EVQLSLS----RIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISK-- 492 (1096)
Q Consensus 421 v~~g~~~~~~~~~~~~~--~~~~~l~----~~l~~Ll~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~~~~~l~~VL~k-- 492 (1096)
+-+|...|+..|.+.++ +....+. ..+.-|...|.+ ..||.+..+.|. -.+.|.+++|+ ...|++|
T Consensus 336 l~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~--s~Dp~iL~VAc~---DIge~Vr~yP~-gk~vv~k~g 409 (442)
T KOG2759|consen 336 LRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLET--SNDPIILCVACH---DIGEYVRHYPE-GKAVVEKYG 409 (442)
T ss_pred HHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhc--CCCCceeehhhh---hHHHHHHhCch-HhHHHHHhc
Confidence 56888899876665433 2212111 123333333333 347998888877 45556677764 4555554
Q ss_pred ----HHHhhccCCCccCCCCchHHHHHHHHHHHHHHHH
Q 001344 493 ----LFELLTSLPFVFKDPSTNSARHARLQICTSFIRI 526 (1096)
Q Consensus 493 ----lf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl 526 (1096)
+++.|+ . ...+||.+|--+.-++
T Consensus 410 gKe~vM~Lln---h--------~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 410 GKERVMNLLN---H--------EDPEVRYHALLAVQKL 436 (442)
T ss_pred hHHHHHHHhc---C--------CCchHHHHHHHHHHHH
Confidence 444453 1 1226888888776655
Done!